RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(869 letters)
>gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 1235 bits (3199), Expect = 0.0
Identities = 406/873 (46%), Positives = 556/873 (63%), Gaps = 73/873 (8%)
Query: 1 METRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIG 60
M R Y+P+E + WQ W ++ FK +KK Y VL+MFPYPSG +HMGH+RNY IG
Sbjct: 1 MMER-YNPKEIEKKWQKYWEENKTFKTTEDSSKKYY-VLDMFPYPSGGLHMGHVRNYTIG 58
Query: 61 DVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120
DV+AR+ R GY+VLHPMGWDAFG+PAENAA + HP WTY+NI M+KQL+S+G S
Sbjct: 59 DVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSY 118
Query: 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRS 180
DWS++ ATCD +YY Q +FL + + RK + VNW PV+ TVLANEQVI+GR WR
Sbjct: 119 DWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRC 178
Query: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSN 240
APVE++ L QWF KI+D + ELLD ++ L +WPEKVK MQ+NWIGRSEG E+ +++
Sbjct: 179 GAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVE-- 236
Query: 241 TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL 300
D E+I V+TTRP+T+FGA+++ +A +H + EKL+ N + F +E K+K
Sbjct: 237 --DSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQT 294
Query: 301 DKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL 360
+ EK G++TG++ HPL IPV+IA++V M+YGTGA+ P DQRD +FAKKYGL
Sbjct: 295 ETKEKTGVFTGLYAIHPLT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGL 353
Query: 361 PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI 420
PI P+++ + +A++GDG++INS LDG+ + EA +A+++ LE++ +
Sbjct: 354 PIKPVIE--PGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKG-----L 406
Query: 421 GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE 480
GKRK+N+RLRDW ISRQR WG PIP+IHC+ CGIV +P+EDLPV LPED+ G+PL
Sbjct: 407 GKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLA 466
Query: 481 NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPH-AKDPINKELVRQWFPVDQ 539
HP W + C KCG A RETDTMDTFV SSWYY+RY PH + P +KE W PVDQ
Sbjct: 467 KHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQ 526
Query: 540 YIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLK 599
YIGGIEHAVLHLLYARFF +L+ +G + DEPFK+L TQGMV
Sbjct: 527 YIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV----------------- 569
Query: 600 PDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLS 659
KMSKSK NV+DP +I+ YGADTARLF +
Sbjct: 570 ------------------------------KMSKSKGNVVDPDDIIEKYGADTARLFEMF 599
Query: 660 DSPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAK---DELQTSSTKKDISLISKSTKFLER 716
PP++D+ WS+ GV+ Y+F+Q++WRL+ +AK L ++ +D L K K +++
Sbjct: 600 AGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDVAALSEDKELRRKLHKTIKK 659
Query: 717 IEENYQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIP 776
+ E+ + L FN A+A + ELVN + K E K +R LE L+ +++P P
Sbjct: 660 VTEDIERLRFNTAIAALMELVNALYKAEDEQDKA--------VLREALEILVRLLAPFAP 711
Query: 777 HLAEECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIK 836
HLAEE W+ LG+ G +A WP D V ++ + +QVNGK R I V + + I+
Sbjct: 712 HLAEELWEKLGHEGSIANAPWPTADEAALVEDEVTIVVQVNGKVRGKIEVPADASKEEIE 771
Query: 837 KTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869
L ++ L+GK+ KK+I++ ++VNIVV
Sbjct: 772 ALALADEKVQKFLEGKTIKKVIVVPGKLVNIVV 804
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches.
Length = 842
Score = 905 bits (2340), Expect = 0.0
Identities = 371/876 (42%), Positives = 540/876 (61%), Gaps = 47/876 (5%)
Query: 6 YSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65
Y+ E + WQ W ++ +FK + NK KY++L+MFPYPSG +HMGH+RNY I DV++R
Sbjct: 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSR 60
Query: 66 FMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKD 125
+ R GY+VLHPMGWDAFG+PAENAA + +HP WTY+NI M+KQLQ++G S DW ++
Sbjct: 61 YYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDRE 120
Query: 126 FATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVI-NGRGWRSDAPV 184
ATCD +YY Q +FL+ + + K A VNW P + TVLANEQV +GR WR PV
Sbjct: 121 IATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPV 180
Query: 185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQ 244
E++ L QWF KI+ ++ELL+ +E L WPE VK MQ+NWIG+SEG+EI ++I D
Sbjct: 181 EKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIA----DH 236
Query: 245 IEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTE 304
E+I V+TTRP+TIFG +++A+A +H + EK++ +N + F + QK T+ +
Sbjct: 237 KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKL 296
Query: 305 KKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIP 364
KKG++TGI HPL IP+++AN+V +YGTGA+ G P D+RD +FA+KY LPI
Sbjct: 297 KKGVFTGIKAIHPLT-GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKV 355
Query: 365 IMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK 424
+ I+ + + +AF+ DG+++NS +G+ ++EA +A+++ LEK+ GKRK
Sbjct: 356 V----IDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEG-----KGKRK 406
Query: 425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPG-NPLENHP 483
+N+RLRDW SRQR WG PIP+IHC+ G V +P+EDLPV LPE +++ G +PL
Sbjct: 407 VNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQ 466
Query: 484 TWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD-PINKELVRQWFPVDQYIG 542
W + C CG ALRETDTMDTF SSWYY+RY+ P D P +KE W PVD YIG
Sbjct: 467 EWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIG 526
Query: 543 GIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDE 602
G EHA+LHLLYARF+ L IGY+ EPFK+L QGMV+ Y PDE
Sbjct: 527 GAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKS-----PPDE 581
Query: 603 VILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP 662
+ R+ + + ++V+ EKMSKSK N IDP +++K +GAD RL+++ P
Sbjct: 582 LTERDEK-----AKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGP 636
Query: 663 PDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISL-------ISKSTKFLE 715
+ W++ G++ +F+ ++W L YN EL + L KFL+
Sbjct: 637 IAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLK 696
Query: 716 RIEENYQ-NLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPM 774
++ E+ + SFN A++ + L+N + K AKK + L+ + ++SP
Sbjct: 697 KVTEDLEKLESFNTAISAMMILLNALYK-----AKKDAL------YLEYLKGFLTVLSPF 745
Query: 775 IPHLAEECWQLLG-NAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDD 833
PHLAEE W+ LG ++ Q KWPK+D V + + +QVNGK +A TV + D++
Sbjct: 746 APHLAEELWEKLGSEPFIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKTVPKDADEE 805
Query: 834 FIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869
+++ + +K L+ K+ KK+I + ++VN V+
Sbjct: 806 QVEELAKQDPEVKKYLENKTIKKVIYVPGKLVNFVI 841
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 698 bits (1804), Expect = 0.0
Identities = 324/908 (35%), Positives = 511/908 (56%), Gaps = 71/908 (7%)
Query: 4 RSYSPQETDSIWQSAWYDSNIFKAENGKN--KKKYFVLEMFPYPSG-NIHMGHLRNYVIG 60
R+Y E + WQ W ++ F+ + + K K++VL+MFPYPSG +H+GH Y
Sbjct: 78 RAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTAT 137
Query: 61 DVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120
D++AR+ R GY+VLHPMGWDAFG+PAE A E HPK+ T +NI R QL+S+G S
Sbjct: 138 DILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSY 197
Query: 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRS 180
DW ++ +T + +YY Q +FL +K + + VNW P TVLANE+V++G R
Sbjct: 198 DWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERG 257
Query: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIV-S 239
PV ++ + QW KI+ + LL+ ++ L +WPE +K MQ+NWIGRSEG E+ + ++
Sbjct: 258 GHPVIRKPMRQWMLKITAYADRLLEDLDDL-DWPESIKEMQRNWIGRSEGAELDFSVLDG 316
Query: 240 NTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSV 299
++ E+I VYTTRP+T+FGA+++ +A +H + L+ + KE +E + S
Sbjct: 317 EGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTA--EQKEAVEEYVDAASRKSD 374
Query: 300 LDKT----EKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFA 355
L++T EK G++TG + +P IP+++A++V +YGTGAI P D RD +FA
Sbjct: 375 LERTELQKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFA 433
Query: 356 KKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSF----LDGMTNTEALQAVMSHLE 411
+K+ LPI ++K + + D E KA++G+G+++NSS ++G+++ EA + V+ LE
Sbjct: 434 QKFDLPIKWVVKPADGNEDDAE--KAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLE 491
Query: 412 KQNIKNSPIGKRKINFRLRDWCISRQRSWGCPIPVIHCQKCG-IVELPKEDLPVQLPEDL 470
+ GK+K+N++LRDW +RQR WG PIPV+ + G V +P+ DLP+ LPE
Sbjct: 492 ETG-----NGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELD 546
Query: 471 DFTLPGN---PLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTP-HAKDPI 526
DFT G PL +W G A RET+TM + S WYY+R+M P ++ +
Sbjct: 547 DFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALV 606
Query: 527 NKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET 586
+KE + W PVD Y+GG EHAVLHLLYARF+ +L IG + EPF+ L QGM++ E
Sbjct: 607 DKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEV 666
Query: 587 YY-----------------QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKV-VIGPL 628
Y +L ++++ + ++VI G+ +F L D+ + +I
Sbjct: 667 EYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKS---GD--SFVLKDDPSIRLIARA 721
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688
KMSKS+ NV++P V+ YGAD+ RL+ + P WS GV+ ++F+ + WRL+
Sbjct: 722 HKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLV 781
Query: 689 YNA-------KDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVIS 741
A +D + + + + K + ++ E ++ FN A++ + E N
Sbjct: 782 VGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNA-- 839
Query: 742 KPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD 801
A K R +E ++++SP PHLAEE W LG++ +A + WP+ +
Sbjct: 840 ------AYKWDKVP-----REAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPEAN 888
Query: 802 PILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIIIIS 861
P V+ ++LP+Q+NGK R I V +D + + L GK KK I +
Sbjct: 889 PSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEIKKRIYVP 948
Query: 862 KRIVNIVV 869
+I+N+++
Sbjct: 949 GKILNVIL 956
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 273 bits (700), Expect = 2e-73
Identities = 191/886 (21%), Positives = 331/886 (37%), Gaps = 264/886 (29%)
Query: 6 YSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65
Y P E + W W S FK + NK + + P +G++H+GH N+ I D++AR
Sbjct: 5 YDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIAR 64
Query: 66 FMRASGYSVLHPMGWDAFGMPAEN---------------AAREHNVHPKM-WTYQNIKVM 109
+ R GY+VL G D G+ + RE W ++ +
Sbjct: 65 YKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTI 124
Query: 110 RKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLAN 169
+ Q++ +G S+DWS++ T D + F+ + +I R VNWDP T +++
Sbjct: 125 KNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISD 184
Query: 170 EQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSE 229
+V V+ L + +++ S+
Sbjct: 185 IEVEY-------KEVKG-KLYYIRYPLANGSK---------------------------- 208
Query: 230 GMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDE 289
+ ++V TTRPET+FG + A+AV H ++
Sbjct: 209 ----------------DYLVVATTRPETMFGDT--AVAV-HP----------------ED 233
Query: 290 EKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQ 349
E+ K ++ K V PL IP+ +V M +GTGA+ P D
Sbjct: 234 ERYK----HLIGKK----------VILPLTGR-KIPIIADEYVDMEFGTGAVKVTPAHDF 278
Query: 350 RDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLD--GMTNTEALQAVM 407
D ++ K++ L I I+ DG++ N + G+T EA + ++
Sbjct: 279 NDYEWGKRHNLEFINILDE----------------DGLL-NENAGKYQGLTRFEARKKIV 321
Query: 408 SHLEKQNI--------KNSPIGKR-------------------------------KINF- 427
L+++ + N R +I F
Sbjct: 322 EDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFV 381
Query: 428 -------------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTL 474
++DWCISRQ WG IPV +C++CG V + KE+ + +
Sbjct: 382 PKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPS- 440
Query: 475 PGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQW 534
E ++TD +DT+ SS + + P + ++++
Sbjct: 441 --------------------VELEQDTDVLDTWFSSSLWPFSTL----GWPDETKDLKKF 476
Query: 535 FPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIK 594
+P D + G + ++ AR L G + PFK ++ G+V
Sbjct: 477 YPTDLLVTG--YDIIFFWVARMIFRSLALTGQV----PFKEVYIHGLV------------ 518
Query: 595 KKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTAR 654
R+ +G KMSKS NVIDP+ VI+ YGAD R
Sbjct: 519 -----------RDEQG------------------RKMSKSLGNVIDPLDVIEKYGADALR 549
Query: 655 LFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR----LIYNAKDELQTSSTKKDISLI--- 707
+ S P DI + K V+S F+ ++W ++ N D+L+ S ++ +SL
Sbjct: 550 FTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRW 609
Query: 708 --SKSTKFLERIEENYQNLSFNKAVANIHELV-NVISKPLMEIAKKKSNADR-------I 757
SK + ++ + + F +A ++E + N +E+ K +
Sbjct: 610 ILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAAR 669
Query: 758 STIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL-VAQQKWPKLDP 802
T+ Y+L+K + ++ P +P + EE WQ + Q +P +D
Sbjct: 670 DTLYYVLDKALRLLHPFMPFITEEIWQHFKEGADSIMLQSYPVVDA 715
>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 208 bits (531), Expect = 7e-54
Identities = 149/603 (24%), Positives = 226/603 (37%), Gaps = 194/603 (32%)
Query: 6 YSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65
Y P+E + WQ W + +K + + K Y + P SG++H+GH+ +Y D +AR
Sbjct: 10 YDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIAR 69
Query: 66 FMRASGYSVLHPMGWDAFGMPAENAA-REHNVHP---------KM---WTYQNIKVMRKQ 112
+ R GY+V P GWD G+P E + + + ++ T ++ K R+
Sbjct: 70 YQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFREL 129
Query: 113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV 172
+ +GLS+DWS ++ T +Y Q FLD K +I R A V W P +T +A
Sbjct: 130 WRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIA---- 185
Query: 173 INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGME 232
A VE R
Sbjct: 186 --------QAEVEYREREGKLNY------------------------------------- 200
Query: 233 IRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQ 292
I++ + EEI + TTRPE + + +A+ V + D DE +
Sbjct: 201 IKFPVEDG-----EEIEIATTRPELL--PACVAVVV-----------HPD-----DERYK 237
Query: 293 KGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352
G PL V +P+ V ++GTGA+ C F D+ D+
Sbjct: 238 H---------------LVGKTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDV 281
Query: 353 DFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMI-NSSFLDGMTNTEALQAVMSHLE 411
+ ++ LP I+ DG M + L G+T EA + ++ L+
Sbjct: 282 TWWRELNLPTRIIIDE----------------DGRMTEAAGKLAGLTIEEARKKIVEDLK 325
Query: 412 KQN--IKNSPI---------GK--------------------------RKINF-----RL 429
K PI ++IN+ R+
Sbjct: 326 SGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMRV 385
Query: 430 R----------DWCISRQRSWGCPIPVIHCQKCGIVELPKE-DLPVQLPEDLDFTLPGNP 478
R DWCISRQR +G PIPV +C+ CG LP E DLPV P
Sbjct: 386 RLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD------------P 433
Query: 479 LENHPTWKKIFCVKCGSEALR-ETDTMDTFVDSSWYYMRYMTPH--AKDPINKELVRQWF 535
++ P K C +CGS ETD MDT+ SS +TP +++L + F
Sbjct: 434 TKDEPPGYK--CPQCGSPGFEGETDVMDTWATSS------ITPLIVTGWERDEDLFEKVF 485
Query: 536 PVD 538
P+D
Sbjct: 486 PMD 488
Score = 99.1 bits (248), Expect = 4e-21
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 18/197 (9%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIW--- 685
+KMSKSK NV+ P ++++ YGAD R + + + D + K V + + ++W
Sbjct: 532 KKMSKSKGNVVTPEELLEKYGADAVRYW-AASARLGSDTPFDEKQVKIGRRLLTKLWNAS 590
Query: 686 RLIYN----AKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-NVI 740
R + + + + D +++K K +E+ E +N F KA+ I +V
Sbjct: 591 RFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVF 650
Query: 741 SKPLMEIAKKKSNADR--------ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLV 792
+E+ K ++ + T+ +L+ L+ +++P +P + EE W L G V
Sbjct: 651 CDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWL-YGGSV 709
Query: 793 AQQKWPKLDPILEVNTD 809
+ WP+ D L D
Sbjct: 710 HRASWPEPDEELIDEED 726
>gnl|CDD|161854 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms.
Length = 861
Score = 192 bits (489), Expect = 4e-49
Identities = 193/906 (21%), Positives = 321/906 (35%), Gaps = 245/906 (27%)
Query: 5 SYSPQETDSIWQSAWYDSNIFK--AENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDV 62
+ + + + W +++IF+ + K K ++ + PY +G+IH+GH N ++ D+
Sbjct: 5 RGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDI 64
Query: 63 VARFMRASGYSVLHPMGWDAFGMPAE------------------------NAAREHNVHP 98
+ R+ G++V GWD G+P E RE
Sbjct: 65 ILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREF---- 120
Query: 99 KMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVN 158
I+ R+Q Q +G+ DW + T D Y Q LF + + ++ R V
Sbjct: 121 -ALKQ--IEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVY 177
Query: 159 WDPVEQTVLAN---EQVINGRGWRSDA-----PVEQRSLPQWFFKISDLSQELLDSIETL 210
W P +T LA E N + + + PV++ K+S L I T
Sbjct: 178 WSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSL------LIWTT 231
Query: 211 SEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTI----DQIEEILVYT-TRPETIFGASFIA 265
+ P W + SN E LV T+ E A
Sbjct: 232 T--P--------------------WTLPSNLAIAVHPDFEYALVQDNTKVEYFILAK--- 266
Query: 266 IAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVV-- 323
+ + K D IK F KG+ L G+ +HPL V
Sbjct: 267 -KLVEKLYNKAGSDYEIIKTF------KGSDLE------------GLEYEHPLYDFVSQL 307
Query: 324 ---IPVYI-ANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPII-PIMKRSINHSQDI-E 377
PV I + V GTG + P + D + KKYGL ++ P+ ++ +
Sbjct: 308 KEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDF 367
Query: 378 EGKAFSGDGIMI---NSSFLDGMTNTEAL--QAVMSH----------------------- 409
+G+ I N ++ + + L ++H
Sbjct: 368 QGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIK 427
Query: 410 -----------LEKQNIKNSPIGKRKINF--RLRDWCISRQRSWGCPIPVIHCQKCG--I 454
++K N R N+ DWCISRQR WG PIP+ +C+ G I
Sbjct: 428 TKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPI 487
Query: 455 VELPKEDLPVQLPE---DLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS- 510
V E+L + D F + + G E R D +D + DS
Sbjct: 488 VVGSIEELIELIELKGIDAWFEDLHRDFLD---KITLKSGDGG-EYRRVPDVLDVWFDSG 543
Query: 511 -SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFF--AHILKKIGYI 567
Y P E ++ FP D + G + +F + + +
Sbjct: 544 SMPYAS------IHYPFENEKFKEVFPADFILEGSDQ------TRGWFYSSLAIGTALFG 591
Query: 568 EIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGP 627
+ P+K + T G + E +G
Sbjct: 592 QA--PYKNVITHGFTLDE-----KG----------------------------------- 609
Query: 628 LEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVD-----------S 676
KMSKS NV+DP+KVI YGAD RL+V S P + D+ +S++ + +
Sbjct: 610 -RKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWE-DLRFSDEILKQVVEKYRKIRWN 667
Query: 677 TYQFIQQIWRLIYNAKDELQTSSTKKDIS-----LISKSTKFLERIEENYQNLSFNKAVA 731
TY+F+ L + D L S + ++S+ +E + E + +F+K +
Sbjct: 668 TYRFLLTYANL--DKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLR 725
Query: 732 NIHELVNV--------ISKPLMEIAKKKSNADRIS---TIRYILEKLIIMMSPMIPHLAE 780
+ + + I + + K + D+ + T+ Y L L+ +++P +PH AE
Sbjct: 726 ALQDFIVEELSNWYIRIIRDRLYCEAK--DNDKRAAQTTLYYALLTLVRLLAPFLPHTAE 783
Query: 781 ECWQLL 786
E +Q L
Sbjct: 784 EIYQNL 789
>gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 126 bits (319), Expect = 3e-29
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 27/233 (11%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLI 688
+KMSKSK NVI K I+ YGAD RL++ S + +D W K V+S + +++ + L
Sbjct: 576 KKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELA 635
Query: 689 -YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH-ELVNVISKPLME 746
+ + D L+S+ + ++ E ++ AV EL+N +
Sbjct: 636 KELIEIGGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW---- 691
Query: 747 IAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILEV 806
++ +R +LE I +++P PHLAEE W LG G V+ +KWP+ D ++
Sbjct: 692 -YLRRVGEANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDE-SKI 749
Query: 807 NTDIILPIQVNGKKRACITVSMNTDDDFIKKTVLELNVIKNILQGKSPKKIII 859
+ + L +++K+ + ++ I + + K PKK+ I
Sbjct: 750 DEEAELAE------------------EYVKRLIEDIREILKVAKIK-PKKVYI 783
Score = 80.3 bits (199), Expect = 2e-15
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 32/146 (21%)
Query: 49 IHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMP----AEN-AAREHNVHPK-MWT 102
+H+GH R Y IGDV+AR+ R GY+VL PM + G P AE A + P+ +
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGD----PETIEL 56
Query: 103 YQNI----------------------KVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLL 140
Y+++ + ++ ++ IG SIDW ++F T D +Y +
Sbjct: 57 YKSLYGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQ 116
Query: 141 FLDFMKHNVIVRKTAQVNWDPVEQTV 166
F + +IV+ + V + P +
Sbjct: 117 FRKLKEKGLIVKGSHPVRYCPNDNNP 142
Score = 40.2 bits (95), Expect = 0.002
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 252 TTRPETIFGASFIAI--AVDHSI--------------SEKLSCDNTDIKEFCDEEKQKGT 295
T RPETIFG + + + + +EKLS + D++ E+ KG+
Sbjct: 176 TLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEI---IEEIKGS 232
Query: 296 SLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCP 345
L G VK+P+ +P+ A+FV + GTG + P
Sbjct: 233 EL------------IGKKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVP 269
>gnl|CDD|180225 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 109 bits (274), Expect = 5e-24
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIW---R 686
KMSKSK NVIDP+ +I YGAD R + + + P RDI + + V+ F ++W R
Sbjct: 520 KMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASR 579
Query: 687 LI-------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELV-N 738
+ + + D ++S+ + + + E F++A ++E + N
Sbjct: 580 FVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWN 639
Query: 739 V-------ISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL 791
++KP+++ A K++ +T+ Y+LE+++ ++ P +P + EE WQ L G+
Sbjct: 640 EFCDWYLELAKPVLQEAAKRAT---RATLAYVLEQILRLLHPFMPFITEELWQKLAPLGI 696
Query: 792 ---VAQQKWPKLDP 802
+ WP+ D
Sbjct: 697 EESIMLAPWPEADE 710
Score = 87.5 bits (218), Expect = 1e-17
Identities = 122/553 (22%), Positives = 183/553 (33%), Gaps = 238/553 (43%)
Query: 5 SYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYP--SGNIHMGHLRNYVIGDV 62
+Y P+E ++ W W + FK ++ N KK F + + P P +G++HMGH N + D+
Sbjct: 8 TYDPKEVEAKWYQKWEEKGYFKPDD--NSKKPFSI-VIPPPNVTGSLHMGHALNNTLQDI 64
Query: 63 VARFMRASGYSVL---------------------------HPMGWDAFGMPAENAAREHN 95
+ R+ R GY+ L H +G + F E
Sbjct: 65 LIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKF---LE------- 114
Query: 96 VHPKMW----TYQNIKVMRKQLQSIGLSIDWSKDFATCD-----------VDYYHCQQLL 140
K+W + QL+ +G S DWS++ T D V Y + L
Sbjct: 115 ---KVWEWKEESGGT--ITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYE-KGL- 167
Query: 141 FLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLS 200
I R VNWDP QT L SD VE + + +
Sbjct: 168 ---------IYRGKRLVNWDPKLQTAL------------SDLEVEYKEVKGKLW------ 200
Query: 201 QELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFG 260
IR+ + D + ++V TTRPET+ G
Sbjct: 201 -------------------------------HIRYPLA----DGSDYLVVATTRPETMLG 225
Query: 261 ASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYT---GIHVKHP 317
+ A+AV N + DE Y G V P
Sbjct: 226 DT--AVAV-----------NPE-----DER------------------YKHLIGKTVILP 249
Query: 318 LNPNVVIPVYIA-NFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDI 376
L IP+ IA +V +GTGA+ P D D + K++ LP+I IM
Sbjct: 250 LV-GREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDE-------- 299
Query: 377 EEGKAFSGDGIMI-NSSFLDGMTNTEALQAVMSHLEKQNI-------------------- 415
DG + N G+ EA +A+++ LE+ +
Sbjct: 300 --------DGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVV 351
Query: 416 -----------KNSPIGKR--------KINF--------------RLRDWCISRQRSWGC 442
K P+ K +I F ++DWCISRQ WG
Sbjct: 352 IEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGH 411
Query: 443 PIPVIHCQKCGIV 455
IP + + +
Sbjct: 412 RIPAWYDEDGEVY 424
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 105 bits (265), Expect = 4e-23
Identities = 125/537 (23%), Positives = 184/537 (34%), Gaps = 173/537 (32%)
Query: 5 SYSPQETDSIWQSAWYDSNIFK----AENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIG 60
SY P+E +S W W S FK A++ + KK+ ++ P +G +H+GH I
Sbjct: 27 SYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQ 86
Query: 61 DVVARFMRASGYSVLHPMGWDAFG-----------MPAENAAREHN---------VHPKM 100
D + R+ R G L G D G M EN R H+ V
Sbjct: 87 DSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTR-HDLGREEFLKKVWE-- 143
Query: 101 WTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWD 160
W ++ + QL+ +G S+DWS++ T D + F+ + +I R T VNW
Sbjct: 144 WKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWC 203
Query: 161 PVEQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIM 220
+T ISD+ E + IE P K+ I
Sbjct: 204 CYLKTA-----------------------------ISDIEVEFEE-IEK----PTKITIP 229
Query: 221 QKNWIGRSEGMEIRWEIVSNTID-QIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCD 279
+ + + + W D EEI+V TTR ET+ G +A+AV H
Sbjct: 230 GYD---KKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGD--VAVAV-HP-------- 275
Query: 280 NTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIAN--FVFMNYG 337
D+ KK G + HP P+ IP+ IA+ V M +G
Sbjct: 276 --------------------KDERYKK--LHGKELIHPFIPDRKIPI-IADDELVDMEFG 312
Query: 338 TGAIFGCPFADQRDMDFAKKYGLPIIPIM--KRSINHSQDIEEGKAFSGDGIMINSSFLD 395
TGA+ P D D + AK++ LP I I IN E G F+
Sbjct: 313 TGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKIN-----ENGGEFA------------ 355
Query: 396 GMTNTEALQAVMSHLEKQN-------------------------------IKNSPIGKRK 424
GM + + + L++ + + KR
Sbjct: 356 GMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRA 415
Query: 425 INF----------------------RLRDWCISRQRSWGCPIPVIHCQKCGIVELPK 459
+ ++DWCISRQ WG IP G P
Sbjct: 416 VEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPS 472
Score = 40.4 bits (95), Expect = 0.002
Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 62/220 (28%)
Query: 629 EKMSKSKKNVIDPMKVI----------KSY---------------------------GAD 651
EKMSKSK NVIDP++VI K Y G D
Sbjct: 584 EKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTD 643
Query: 652 TARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWR----LIYNAKDELQTSSTKKDISLI 707
R +L+ + R+I V F ++W + + ++
Sbjct: 644 ALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNN 703
Query: 708 SKSTKFL------------ERIEENYQNLSFNKAVANIH-----ELVNV---ISKP-LME 746
+S + + + E ++ F++A + EL +V + KP L +
Sbjct: 704 VESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSK 763
Query: 747 IAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786
+ + + +L+ + ++ PM+P + EE +Q L
Sbjct: 764 QSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRL 803
>gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS.
Length = 938
Score = 100 bits (250), Expect = 2e-21
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 15 WQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
WQ W +++IF+A + +++K+F+ +PY +G +H GH R + I +V ARF R G +V
Sbjct: 7 WQKRWEEAHIFEA-DPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNV 65
Query: 75 LHPMGWDAFGMP----AENAARE--------HNVH------------PKMWTYQNIKVMR 110
L P+G+ G P AE R VH P+ +
Sbjct: 66 LFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAE 125
Query: 111 KQLQSIGLSIDWSKDFATCDVDY 133
+S+G SIDW + F T D Y
Sbjct: 126 SACKSMGYSIDWRRSFKTTDPYY 148
Score = 85.3 bits (211), Expect = 7e-17
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQIWRLIY 689
KMSKSK NV+ + ++ +GAD ARL++ + +D W V+ T +++++
Sbjct: 620 KMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAE 679
Query: 690 NAKDELQTSSTKK----DISLISKSTKFLERIEENYQNLSFNKAV-ANIHELVNVISKPL 744
E + ++ D L S+ ++ E +N KAV + +L +
Sbjct: 680 EITKESNLETGEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYR 739
Query: 745 MEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLD 801
++ + + LE I +++P PH AEE W+ +GN G V+ K+P+
Sbjct: 740 -----RRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEGFVSLAKFPEAS 791
Score = 30.6 bits (69), Expect = 1.7
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 252 TTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLD----KTEKKG 307
T RPET++G + + + + K +E + S L +
Sbjct: 216 TLRPETVYGVTNCWVNPT---ITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGK 272
Query: 308 IYTGIHVKHPL-NPNVVIPVYIANFVFMNYGTGAIFGCP 345
+ G V +P+ P V P+ A FV GTG + P
Sbjct: 273 QFIGKKVHNPVVGPEV--PILPAEFVDTTKGTGVVMSVP 309
>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 98.1 bits (244), Expect = 8e-21
Identities = 185/882 (20%), Positives = 308/882 (34%), Gaps = 271/882 (30%)
Query: 19 WYDSNIFKAENGKNKKKYFVLEMFPYP--SGNIHMGHLRNYVIGDVVARFMRASGYSVLH 76
W++S + N FV+ M P P +G++HMGH + D++ R+ R G L
Sbjct: 72 WWESQGYFKPNFDRGGDPFVIPM-PPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLW 130
Query: 77 PMGWDAFGMPAENAAREHNVHPKMWTYQNIK----------------------VMRKQLQ 114
G D G+ + V KM + IK + Q++
Sbjct: 131 IPGTDHAGIATQ------LVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIK 184
Query: 115 SIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVIN 174
+G S DWS++ T D F+ + +I + + VNW P QT
Sbjct: 185 RLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTA-------- 236
Query: 175 GRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIR 234
+SDL E SE P + I+
Sbjct: 237 ---------------------VSDLEVE-------YSEEPGTL-------------YYIK 255
Query: 235 WEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKG 294
+ + + D + + TTRPET+FG +AIAV+ D+ K
Sbjct: 256 YRVAGGSEDFLT---IATTRPETLFGD--VAIAVN----------------PEDDRYSK- 293
Query: 295 TSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDF 354
Y G P+ +P+ +V ++GTG + P D D
Sbjct: 294 --------------YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLL 339
Query: 355 AKKYGLPIIPIMKR--SINHS-------------QDIEE-GKAFS--------------G 384
A+K GLPI+ +M + ++N D+EE G A G
Sbjct: 340 ARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGG 399
Query: 385 DGI--MINSSFLDGMT--NTEALQAVMSHLEKQNIKNSPIGKRKI-NFRL---RDWCISR 436
+ I +++ + M +AL+AV E + P KI N L +DWCISR
Sbjct: 400 EVIEPLVSKQWFVTMEPLAEKALKAV----ENGELTIIPERFEKIYNHWLSNIKDWCISR 455
Query: 437 QRSWGCPIPV--IHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCG 494
Q WG IPV I + C +ED V + E + +I+
Sbjct: 456 QLWWGHRIPVWYIVGKDC------EEDYIVARSAEEALE---KAREKYGKDVEIY----- 501
Query: 495 SEALRETDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLY 553
++ D +DT+ S+ W + P ++ E ++++P G H +L
Sbjct: 502 ----QDPDVLDTWFSSALWPFSTLGWPD----VSAEDFKKFYPTTVLETG--HDILFFWV 551
Query: 554 ARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENC 613
AR ++ G + PF ++ G++ R+ +G
Sbjct: 552 ARMVMMGIEFTGTV----PFSYVYLHGLI-----------------------RDSQG--- 581
Query: 614 AFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKG 673
KMSK+ NVIDP+ IK +G D R F L+ +D+ S +
Sbjct: 582 ---------------RKMSKTLGNVIDPLDTIKEFGTDALR-FTLALGTAGQDLNLSTER 625
Query: 674 VDSTYQFIQQIWRLIYNA-KDELQTSSTKKDIS-------------------------LI 707
+ S F ++W NA K LQ ++ D S ++
Sbjct: 626 LTSNKAFTNKLW----NAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVV 681
Query: 708 SKSTKFLERIEENYQNLSFNKAVANIHEL---------VNVISKPLMEIAKKKSNADRIS 758
SK + ++ + +Y F I++ + L + + +
Sbjct: 682 SKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQA 741
Query: 759 TIRYILEKLIIMMSPMIPHLAEECWQLLGNAGL-VAQQKWPK 799
+ Y+ E ++ ++ P +P + EE WQ L + WP+
Sbjct: 742 VLLYVFENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQ 783
>gnl|CDD|149360 pfam08264, Anticodon_1, Anticodon-binding domain. This domain is
found valyl and leucyl tRNA synthetases. It binds to the
anticodon of the tRNA.
Length = 148
Score = 94.8 bits (236), Expect = 8e-20
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 706 LISKSTKFLERIEENYQNLSFNKAVANIHELVNV--------ISKPLMEIAKKKSNADRI 757
++S+ K ++ + E Y+ FN A + ++E +SK + + R
Sbjct: 4 ILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPDESKRRA 63
Query: 758 STIRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILEVNTD------II 811
+T+ +LE L+ +++P +P + EE WQ LG G + WP+ D
Sbjct: 64 TTLYEVLETLLRLLAPFMPFITEELWQKLGLKGSIHLAPWPEADEEALDEELEEEFELRQ 123
Query: 812 LPIQVNGKKRACITVSMNTDDDFI 835
+Q K R+ + + + + I
Sbjct: 124 EIVQAIRKLRSELKIKKSLPLEVI 147
>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 93.7 bits (234), Expect = 2e-19
Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 68/277 (24%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGV-DSTYQFIQQIW-- 685
+KMSKS N +DP +V YGAD R ++LS S P D+ +S GV + +F+ +W
Sbjct: 591 QKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNV 650
Query: 686 -----------RLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH 734
Y ++ S + D ++S+ ++ + E N KA I
Sbjct: 651 YSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIR 710
Query: 735 ELVNVIS-------KPLMEIAKKKSNADRIS---TIRYILEKLIIMMSPMIPHLAEECWQ 784
+ V+ +S + K++ + D+++ T+ +LE L + +P P +AEE +Q
Sbjct: 711 DFVDDLSNWYIRRSRRRF--WKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQ 768
Query: 785 LLGNAGLVAQQK--------WPK-----LDPILEVNTDIILPI---------QVNGKKR- 821
L + WP+ +D LE D++ I + K R
Sbjct: 769 -----NLTREDAPESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKKAGIKVRQ 823
Query: 822 --ACITVSMNTDD--------DFIKKTVLELNVIKNI 848
+ ITV+ + + D IK ELNV K +
Sbjct: 824 PLSKITVAEDEEVAEALERYEDLIKD---ELNV-KEV 856
Score = 80.2 bits (199), Expect = 2e-15
Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 43/182 (23%)
Query: 19 WYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLH 76
W +++IF+ EN + ++ + P +G H GHL I DVV R+ GY V
Sbjct: 24 WKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVER 83
Query: 77 PMGWDAFGMPAENAA-REHNVHPK------------------MWTYQNIKVMRKQLQSIG 117
GWD G+P E +E + K + Y + + +G
Sbjct: 84 RAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRY--TDEWEEYTERLG 141
Query: 118 LSIDWSKDFATCDVDY----------YHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVL 167
+D+ + T D +Y + + LL+ + V V + P +T L
Sbjct: 142 RWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKG---YRV-------VPYCPRCETPL 191
Query: 168 AN 169
+N
Sbjct: 192 SN 193
Score = 64.0 bits (157), Expect = 1e-10
Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 43/129 (33%)
Query: 429 LRDWCISRQRSWGCPIPVIHCQKCG-------IVELPKEDLPVQLPEDL------DFTLP 475
RDW ISR R WG P+P+ C+ CG I EL + P DL + TLP
Sbjct: 443 ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLP 502
Query: 476 GNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS------SWYYMRYMTPHAKDPINKE 529
P G R D +D + DS +Y P NKE
Sbjct: 503 -CP--------------DGGTMRRVPDVIDVWFDSGSMPYAQLHY-----PFE----NKE 538
Query: 530 LVRQWFPVD 538
+ FP D
Sbjct: 539 WFEKHFPAD 547
Score = 40.9 bits (97), Expect = 0.001
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEW-PEKVKIMQ-KNWI 225
WR D P+ + WF +++ + +L+ + W PE +K + W+
Sbjct: 392 WRCDTPLIYYATESWFIRVTKIKDRMLELNQK-INWYPEHIKDGRFGKWL 440
Score = 29.0 bits (66), Expect = 5.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 311 GIHVKHPLNPNVVIP----VYIANFVFMNYGTGAI-----FGCPFADQRDMDFAKKYGLP 361
G+ + P V +A+FV GTG + FG D D + KKYGLP
Sbjct: 284 GLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFG---ED--DFEVGKKYGLP 338
Query: 362 II 363
++
Sbjct: 339 VV 340
>gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 91.5 bits (228), Expect = 8e-19
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 34/214 (15%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102
PY +G H+GHL + DV AR++R GY VL G D G E AA + V P+
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEGVTPQELV 67
Query: 103 YQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP 161
+ + ++ + +S D DF T + Q FL + I + +
Sbjct: 68 DRYHEEFKELFKKFNISFD---DFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCV 124
Query: 162 VEQTVLANEQV-----------------------------INGRGWRSDAPVEQRSLPQW 192
++ L + V IN R S + E + +
Sbjct: 125 SDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELKEEEHY 184
Query: 193 FFKISDLSQELLDSIETL-SEWPEKVKIMQKNWI 225
FF++S +LL+ I+ E P V + +W+
Sbjct: 185 FFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWL 218
Score = 51.5 bits (124), Expect = 9e-07
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670
KMSKS+ NV+DP +++ YG D R ++ ++P +D +S
Sbjct: 323 GKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFS 364
Score = 31.1 bits (71), Expect = 1.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 429 LRDWCISRQRSWGCPIP 445
L+D I+R WG P+P
Sbjct: 222 LKDLSITRDLDWGIPVP 238
>gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 84.9 bits (211), Expect = 8e-17
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRD--------IIWSNKGVDSTY-Q 679
EKMSKS NVIDP ++ YG D R F+L + P +D I N + +
Sbjct: 298 EKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357
Query: 680 FIQQIWRLIY---NAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736
Q+ +I + K + T+ D +L+ + LER+ NL+F+KA+ I L
Sbjct: 358 LAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILAL 417
Query: 737 VNVISKPLMEIAK---KKSNADRISTIRYILEKLI----IMMSPMIPHLAEECWQLLGNA 789
V +K + E A K++ +R++T+ Y L +++ +++ P++P LA + LG
Sbjct: 418 VRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477
Query: 790 G----LVAQQKWPKLDP 802
A W +L P
Sbjct: 478 EDENRDFAALSWGRLAP 494
Score = 69.9 bits (172), Expect = 2e-12
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAARE 93
KK+++ YP+G H+GH + DV+ARF R GY V G D G + A E
Sbjct: 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE 60
Query: 94 HNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNVIVR 152
+ P+ +N ++ +++ +S D DF T D + Q +F + + I
Sbjct: 61 AGISPQELADRNSAAFKRLWEALNISYD---DFIRTTDPRHKEAVQEIFQRLLANGDIYL 117
Query: 153 KTAQ--------VNWDPVEQTVLANEQVINGRGW--RSDAPVEQRSLPQWFFKISDLSQE 202
+ + ++I + APVE +FF++S +
Sbjct: 118 GKYEGWYCVRCEEFYTE--------SELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDK 169
Query: 203 LLDSIETLSEW--PEKVK 218
LL+ E ++ P +
Sbjct: 170 LLELYEANPDFIQPASRR 187
Score = 28.3 bits (64), Expect = 8.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 418 SPIGKRK--INFR---LRDWCISRQR-SWGCPIP 445
P +R I+F L+D ISR WG P+P
Sbjct: 182 QPASRRNEVISFVKSGLKDLSISRTNFDWGIPVP 215
>gnl|CDD|180231 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 82.1 bits (204), Expect = 6e-16
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 50/211 (23%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS-----DSPPDRDIIWSNKGVDSTYQFIQQ 683
KMSKS NVIDP VIK YGAD RL+V S D +I+ K V Y
Sbjct: 591 RKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEIL---KQVAEAY----- 642
Query: 684 IWRLIYN--------------AKDELQTSSTKKDISLI-----SKSTKFLERIEENYQNL 724
R I N AKD + +++ + + + E I E Y+N
Sbjct: 643 --RRIRNTLRFLLGNLNDFDPAKDAVP----YEELLELDRWALHRLAELQEEILEAYENY 696
Query: 725 SFNKAVANIHELVNV--------ISKPLMEIAKKKSNADRI--STIRYILEKLIIMMSPM 774
F+K +H +V I K + S A R + + +ILE L+ ++P+
Sbjct: 697 DFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPI 756
Query: 775 IPHLAEECWQLL--GNAGLVAQQKWPKLDPI 803
+ AEE WQ L V ++WP++ +
Sbjct: 757 LSFTAEEIWQYLPGEREESVFLEEWPEVPEL 787
Score = 64.0 bits (157), Expect = 2e-10
Identities = 58/288 (20%), Positives = 97/288 (33%), Gaps = 135/288 (46%)
Query: 311 GIHVKHPLNPNVVIPVYIANFVFMNYGTGAI-----FGCPFADQRDMDFAKKYGLPII-P 364
G+ +HP + PV + + V ++ GTG + G + D +KYGL ++ P
Sbjct: 296 GLVAQHPFY-DRDSPVILGDHVTLDAGTGLVHTAPGHG-----EDDYVVGQKYGLEVLNP 349
Query: 365 IMKRSINHSQDIEEGKAFSGDGIMINSS-FLDGMT----N---TEALQAVMSHLEKQNIK 416
+ DG + G+ N E L+ + L+++ I
Sbjct: 350 VD-----------------DDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKIT 392
Query: 417 NS---------PI---------------GKR--------KINF-------RLR------- 430
+S P+ G R K+ + R+
Sbjct: 393 HSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVENRP 452
Query: 431 DWCISRQRSWGCPIPVIHCQKCG--------------IVE---------LPKEDLPVQLP 467
DWCISRQR+WG PIP+ + ++ G + E L ++L LP
Sbjct: 453 DWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKEL---LP 509
Query: 468 EDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS--SWY 513
++ D ++K ETD +D + DS S
Sbjct: 510 DEAD------------EYEK------------ETDILDVWFDSGSSHA 533
Score = 61.7 bits (151), Expect = 8e-10
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 37/180 (20%)
Query: 15 WQSAWYDSNIFKA--ENGKNKKKYFVL----EMFPYPSGNIHMGHLRNYVIGDVVARFMR 68
W ++++++ E K K K F+L PY +G+IH+GH N ++ D++ +
Sbjct: 28 ILKRWEENDLYQKIREANKGKPK-FILHDGP---PYANGDIHIGHALNKILKDIIVKSKT 83
Query: 69 ASGYSVLHPMGWDAFGMPAENA--------------------AREHNVHPKMWTYQNIKV 108
SG+ + GWD G+P E RE+ + + +
Sbjct: 84 MSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY-------ALEQVDI 136
Query: 109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168
R+ + +G+ DW + T D Y K + + V W P + LA
Sbjct: 137 QREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALA 196
Score = 33.5 bits (78), Expect = 0.22
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 178 WRSDAPVEQRSLPQWFFKI--SDLSQELLDSIE 208
WR+ PV R+ PQWF + L ++ L +IE
Sbjct: 399 WRTKKPVIFRATPQWFISMDKKGLREQALKAIE 431
>gnl|CDD|184893 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 81.6 bits (201), Expect = 8e-16
Identities = 80/380 (21%), Positives = 142/380 (37%), Gaps = 101/380 (26%)
Query: 429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKI 488
+ DWCISRQ WG IP +C G V + +E PE
Sbjct: 413 IHDWCISRQLWWGHQIPAWYCPD-GHVTVARET-----PEA------------------- 447
Query: 489 FCVKCGSEALRE-TDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHA 547
C CG LR+ D +DT+ S + M P + +R ++P G H
Sbjct: 448 -CSTCGKAELRQDEDVLDTWFSSGLWPFSTMGW----PEQTDTLRTFYPTSVMETG--HD 500
Query: 548 VLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRN 607
++ AR L +G + PF+ ++ MV R+
Sbjct: 501 IIFFWVARMMMMGLHFMG----EVPFRTVYLHPMV-----------------------RD 533
Query: 608 IEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDI 667
+G+ KMSK+K NVIDP+ + + YGAD R + + + RDI
Sbjct: 534 EKGQ------------------KMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDI 575
Query: 668 IWSNKGVDSTYQFIQQIWR-----------LIYNAKDELQTSSTKKDISLISKSTKFLER 716
+ + ++ F ++W +D + + T D ++++ + +
Sbjct: 576 KLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNE 635
Query: 717 IEENYQNLSFNKAVANIHELV-NVISKPLMEIAK---------KKSNADRISTIRYILEK 766
E + FN A ++ V + + +E+AK + + + + + L+
Sbjct: 636 TVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQ--AVLVHCLQT 693
Query: 767 LIIMMSPMIPHLAEECWQLL 786
++ P +P + EE W +L
Sbjct: 694 SYRLLHPFMPFITEELWHVL 713
Score = 75.4 bits (185), Expect = 6e-14
Identities = 81/384 (21%), Positives = 137/384 (35%), Gaps = 107/384 (27%)
Query: 3 TRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYP--SGNIHMGHLRNYVIG 60
+ Y +E ++ W W + F + + F + + P P +G++H+GH +
Sbjct: 16 AKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSI-VLPPPNVTGSLHLGHALTATLQ 74
Query: 61 DVVARFMRASGYSVLHPMGWDAFGMP-----------AENAAREHNVH-----PKMWTYQ 104
DV+ R+ R SG++ L G D G+ E +R H++ ++W ++
Sbjct: 75 DVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSR-HDLGREAFLERVWAWK 133
Query: 105 NIKVMR--KQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPV 162
R +Q +++G S+DW ++ T D + +F+ + +I R+ +NW P
Sbjct: 134 EQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPD 193
Query: 163 EQTVLANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQK 222
+T L SD VE Q EL
Sbjct: 194 CRTAL------------SDLEVEHEEAHQ---------GEL------------------- 213
Query: 223 NWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTD 282
W D EI+V TTRPET+ G + +A+
Sbjct: 214 ------------WSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPL------------- 248
Query: 283 IKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIF 342
D G V+HP+ V A V +GTGA+
Sbjct: 249 -----DPRYMA---------------LHGKKVRHPITGRTFPIVADAILVDPKFGTGAVK 288
Query: 343 GCPFADQRDMDFAKKYGLPIIPIM 366
P D D + K++GL +I ++
Sbjct: 289 VTPAHDFNDFEVGKRHGLEMITVI 312
>gnl|CDD|184337 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 81.2 bits (201), Expect = 1e-15
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS-----DSPPDRDIIWSNKGVDSTYQFIQQ 683
EKMSKS N + P VIK GAD RL+V S D ++I+ K V TY+ ++
Sbjct: 629 EKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEIL---KQVSETYRKLRN 685
Query: 684 IWRLI------YNAKDELQTSSTKKDIS--LISKSTKFLERIEENYQNLSFNKAVANIHE 735
R + ++ +++ + ++ ++ + + + E Y F + +
Sbjct: 686 TLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVN 745
Query: 736 LVNV-ISKPLMEIAK------KKSNADR---ISTIRYILEKLIIMMSPMIPHLAEECWQL 785
VNV +S +I K S+ R + I +L ++P++P AEE W
Sbjct: 746 FVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLY 805
Query: 786 L 786
Sbjct: 806 R 806
Score = 78.8 bits (195), Expect = 5e-15
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 34/184 (18%)
Query: 15 WQSAWYDSNIFKA--ENGKNKKKYFVL-EMFPYPSGNIHMGHLRNYVIGDVVARFMRASG 71
Q+ W + +++K E K + K FVL + PY +GNIH+GH N ++ DV+ R + G
Sbjct: 33 IQARWEEIDLYKKLREQAKGRPK-FVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLG 91
Query: 72 YSVLHPMGWDAFGMPAE-----------------------NAAREHNVHPKMWTYQNIKV 108
+ + GWD G+P E RE+ + W I V
Sbjct: 92 FDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALS---W----IDV 144
Query: 109 MRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168
R++ + +G+ DW + T D F F + R + V W VE+T LA
Sbjct: 145 QREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALA 204
Query: 169 NEQV 172
++
Sbjct: 205 EAEI 208
Score = 44.9 bits (107), Expect = 8e-05
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 431 DWCISRQRSWGCPIPVI 447
DW ISRQR+WG PIP+
Sbjct: 489 DWVISRQRAWGVPIPIF 505
Score = 35.7 bits (83), Expect = 0.055
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 178 WRSDAPVEQRSLPQWFFKISD-------LSQELLDSIETLSEWPEK 216
WRS PV R+ PQWF + L LD+I+ P
Sbjct: 430 WRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAA 475
>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 78.4 bits (193), Expect = 8e-15
Identities = 122/526 (23%), Positives = 182/526 (34%), Gaps = 179/526 (34%)
Query: 4 RSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVV 63
+ YSP + W + W S F A+ +K + ++ P +G +H+GH I D +
Sbjct: 98 KQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTI 157
Query: 64 ARFMRASGYSVLHPMGWDAFGMPAE----------------NAAREHNVHPKM-WTYQNI 106
R+ R SGY+ L G D G+ + + RE V W +
Sbjct: 158 IRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYG 217
Query: 107 KVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTV 166
+ QL+ +G S+DWS++ T D F+ K +I R VNWD +T
Sbjct: 218 GTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTA 277
Query: 167 LANEQVINGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIE-TLSEWPEKVKIMQKNWI 225
ISD+ + +D E TL + P K ++
Sbjct: 278 -----------------------------ISDVEVDYIDIKERTLLKVPGYDKPVE---- 304
Query: 226 GRSEGMEIRWEIVSNTIDQIE----EILVYTTRPETIFGASFIAIAVDHSISEKLSCDNT 281
+ ++++ +E EI+V TTR ET+ G + IAI D
Sbjct: 305 ---------FGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPD------------ 343
Query: 282 DIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVK---HPLNPNVVIPVYIANFVFMNYGT 338
DE Y +H K HP N + + A V N+GT
Sbjct: 344 ------DER------------------YKHLHGKFAVHPFNGRKLPIICDAILVDPNFGT 379
Query: 339 GAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINS---SFLD 395
GA+ P D D + K++ L I I F+ DG INS S
Sbjct: 380 GAVKITPAHDPNDFEVGKRHNLEFINI----------------FTDDG-KINSNGGSEFA 422
Query: 396 GMTNTEALQAVM-----------------------------------------SHLEKQN 414
GM A +AV+ S + KQ
Sbjct: 423 GMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQA 482
Query: 415 IKNSPIGK-RKINF--------------RLRDWCISRQRSWGCPIP 445
+ + G+ +K+ F +RDWCISRQ WG IP
Sbjct: 483 LDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIP 528
Score = 30.6 bits (69), Expect = 1.8
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 621 SKVVIGPL------EKMSKSKKNVIDPMKVI 645
KV + P+ KMSKS NVIDP++VI
Sbjct: 640 RKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 670
>gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 77.5 bits (192), Expect = 1e-14
Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 53/233 (22%)
Query: 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR 92
+K V PY +G IH+GHL Y+ D+ R+ R G+ VL DA G P A
Sbjct: 1 MRKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAE 60
Query: 93 EHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDV--DYYH---------CQQLLF 141
+ + P+ + I + + +DFA + D Y Q ++
Sbjct: 61 KEGITPE----ELIARYHAEHK---------RDFAGFGISFDNYGSTHSEENRELAQEIY 107
Query: 142 LDFMKHNVIVRKTAQVNWDPVEQTVL-------------ANEQ----------------V 172
L ++ I KT + +DP + L A +Q +
Sbjct: 108 LKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTEL 167
Query: 173 INGRGWRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWI 225
IN + S A + +FFK+ + L + I E V K W+
Sbjct: 168 INPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWL 220
Score = 39.0 bits (92), Expect = 0.006
Identities = 42/219 (19%), Positives = 66/219 (30%), Gaps = 72/219 (32%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPP---DRDIIWSNKGVDSTYQFIQQIW 685
KMSKS+ I + D R ++ + P D D W + F Q++
Sbjct: 328 AKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWED--------FQQRV- 378
Query: 686 RLIYNAKDEL---------------------QTSSTKKDISLISKSTKFLERIEENYQNL 724
N+ EL + D L+ + E+I E Y+
Sbjct: 379 ----NS--ELVGKVVNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKIAEAYEAR 432
Query: 725 SFNKAVANIHELVNVISKPLMEIAKK--------------KSNADRISTIRY----ILEK 766
F KA+ I M +A K + +R+ + +
Sbjct: 433 EFRKALREI-----------MALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRA 481
Query: 767 LIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILE 805
L I + P++P LAE L L W L
Sbjct: 482 LAIYLKPVLPELAERAEAFLNLEELT----WDDAQQPLA 516
Score = 29.4 bits (67), Expect = 4.6
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 429 LRDWCISRQRSW-GCPIP 445
L+DW ISR + G IP
Sbjct: 224 LQDWDISRDAPYFGFEIP 241
>gnl|CDD|161858 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
this model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain.
Length = 530
Score = 76.6 bits (189), Expect = 2e-14
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 36/217 (16%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWT 102
PY +G H+GH ++ DV AR+ R GY VL G D G E A + + PK
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELV 67
Query: 103 YQNIKVMRKQLQSIGLSIDWSKDFA-TCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDP 161
+ + + + + +S D F T D ++ Q +F ++ I K + + P
Sbjct: 68 DKYHEEFKDDWKWLNISFD---RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCP 124
Query: 162 VEQTVLANEQV-----------------------------INGRGWRSDAPVEQRSLPQW 192
+ L + V IN R A E R +
Sbjct: 125 ECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHY 184
Query: 193 FFKISDLSQELLDSIETLSE---WPEKVKIMQKNWIG 226
FF++S +EL + I E VK +NW+
Sbjct: 185 FFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLK 221
Score = 65.9 bits (161), Expect = 4e-11
Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS-------------NKGVDS 676
KMSKS NV+DP ++ +GAD R ++L + P +D +S NK +
Sbjct: 327 KMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNL 386
Query: 677 TYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736
+ + I + +N + + ++D L+ + LE+I+E ++ F KA+ I +L
Sbjct: 387 LNRTLGFIKK-YFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKL 445
Query: 737 VNVISKPLMEIA--KKKSNADRISTIRYILEKLI----IMMSPMIPHLAEECWQLLGNA 789
+ +K + E + + R+ + + LI I++ P++P L+E+ + L
Sbjct: 446 ADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504
Score = 29.3 bits (66), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 429 LRDWCISRQRS-WGCPIP 445
L+D I+R WG P+P
Sbjct: 224 LKDLAITRDLVYWGIPVP 241
>gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 74.9 bits (185), Expect = 8e-14
Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 42/238 (17%)
Query: 590 LEGIKKKYLKPDEVI----LRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVI 645
L G + PDE++ L +EG K SKS+ I +
Sbjct: 309 LLGSGEPLKLPDEIVSSEYL-TLEGG------------------KFSKSRGWGIWVDDAL 349
Query: 646 KSYGADTARLFVLSDSPPDRDIIWS--------NKGVDSTY-QFIQQIWRLIYNAKDEL- 695
+ Y D R ++ +++P + D ++ N + Y + ++ I +
Sbjct: 350 ERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIV 409
Query: 696 -QTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEIA---KKK 751
+D LI+++ + + E + F KA+ I EL +K L E A K
Sbjct: 410 PPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAK 469
Query: 752 SNADRISTIRYILEKLI----IMMSPMIPHLAEECWQLLGNAGLVAQQKWPKLDPILE 805
++ +R +T+ Y L+ +++ P +P A++ W++LG + + W L P+L
Sbjct: 470 TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIE-KLTWESLKPLLP 526
Score = 73.3 bits (181), Expect = 3e-13
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 32 NKKKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENA 90
+ + +PY +G +H+GHL + DV AR+ R G VL G D G P E A
Sbjct: 1 MMMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELA 60
Query: 91 AREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFA--TCDVDYYHCQQLLFLDFMKHN 148
A++ V P+ + + ++ + +G+S D F T + Q+ FL ++
Sbjct: 61 AKKEGVTPQELADKYHEEHKEDFKKLGISYDL---FTRTTSPNHHEVVQE-FFLKLYENG 116
Query: 149 VIVRKTAQVNWDPVEQTVLANEQV-----------------------------INGRGWR 179
I +KT + + P + L + V IN R
Sbjct: 117 YIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKI 176
Query: 180 SDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIR 234
S + E R +F + ++ L IE+ +WP V NW+ EG++ R
Sbjct: 177 SGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWL--KEGLKPR 229
Score = 32.9 bits (76), Expect = 0.37
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 429 LRDWCISRQRSWGCPIPV 446
L+ I+R WG P+P
Sbjct: 226 LKPRAITRDLDWGIPVPW 243
>gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 69.8 bits (171), Expect = 3e-12
Identities = 105/438 (23%), Positives = 164/438 (37%), Gaps = 154/438 (35%)
Query: 431 DWCISRQRSWGCPIPVI----------------HCQKCGIV---------ELPKEDLPVQ 465
DWCISRQR+WG PIPV H + IV + EDL
Sbjct: 468 DWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVK--SIVAQKGSDAWWYMDVEDL--- 522
Query: 466 LPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS--SWYYMRYMTPHAK 523
LPE + ++K TDTMD + DS SW + ++
Sbjct: 523 LPEKYR--------DKASDYEK------------GTDTMDVWFDSGSSWAGVL----GSR 558
Query: 524 DPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVV 583
+ ++ +P D Y+ G + H + F + +L + P+K + T G V+
Sbjct: 559 EGLS-------YPADLYLEGSDQ---HRGW--FQSSLLTSVATKGK-APYKSVLTHGFVL 605
Query: 584 HETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMK 643
E +++ + P V IEG K++K +P
Sbjct: 606 DEKGFKMSKSLGNVVDPRLV----IEG---------------------GKNQKQ--EP-- 636
Query: 644 VIKSYGADTARLFVLSDSPPDRDIIWSNKGVDST------YQFIQQ---IWR-------- 686
+YGAD RL+V S VD T Q ++Q I+R
Sbjct: 637 ---AYGADVLRLWVAS--------------VDYTGDVLIGPQILKQMSDIYRKLRGTLRY 679
Query: 687 LIYNAKDELQTSSTK-KDISLISKSTKF-----LERIEENYQNLSFNKAVANIHELVNV- 739
L+ N D ++ +D+ I K F + IEE+Y N F K + V
Sbjct: 680 LLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVD 739
Query: 740 ISKPLMEIAKKK------SNADRIS--TIRY-ILEKLIIMMSPMIPHLAEECWQLL---- 786
+S +++AK + ++ R S T+ L L+ ++P++PHLAE+ WQ L
Sbjct: 740 LSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQE 799
Query: 787 --GNAGLVAQQKWPKLDP 802
A V + WP +
Sbjct: 800 DGSAAESVFEAGWPTPNE 817
Score = 64.8 bits (158), Expect = 1e-10
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16 QSAWYDSNIFKAENGKNKKKYFVL-EMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
Q W ++ ++K + +N + F L + PY +G++H+GH N ++ D + R+ G V
Sbjct: 13 QKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKV 72
Query: 75 LHPMGWDAFGMPAE--------NAAREHNVHPKM------WTYQNIKVMRKQLQSIGLSI 120
+ GWD G+P E AR+ K+ + + + R+ + G+
Sbjct: 73 HYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWG 132
Query: 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLA 168
DW + T D +Y Q +F + I R V+W P +T LA
Sbjct: 133 DWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALA 180
Score = 31.3 bits (71), Expect = 1.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 290 EKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQ 349
E + G L VL KT G HPL V +++ GTG + P Q
Sbjct: 291 EAKWGVKLVVL-KTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQ 349
Query: 350 RDMDFAKKYGLPII 363
D KYGLP++
Sbjct: 350 EDYITGLKYGLPLL 363
>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 67.1 bits (165), Expect = 2e-11
Identities = 45/186 (24%), Positives = 94/186 (50%), Gaps = 33/186 (17%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQI---- 684
KMSKSK NV+DP +++ YG D R ++L R++ + + G S +++I
Sbjct: 298 GKMSKSKGNVVDPEELVDRYGLDALRYYLL------REVPFGSDGDFSPEALVERINSDL 351
Query: 685 --------WRLI------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAV 730
R + ++ + + T+ D LI+ + + L+ EE + L F++A+
Sbjct: 352 ANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRAL 411
Query: 731 ANIHELVNVISKPLME-----IAKKKSNADRISTIRY----ILEKLIIMMSPMIPHLAEE 781
+ +L++ +K + E +AK + +R++T+ Y L K+ +++SP +P +++
Sbjct: 412 EEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKK 471
Query: 782 CWQLLG 787
++ LG
Sbjct: 472 IFEQLG 477
Score = 47.5 bits (114), Expect = 1e-05
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAR 92
KK +++ YP+G H+GH + D +AR+ R GY V G D G + AA
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE 62
Query: 93 EHNVHPK 99
+ P+
Sbjct: 63 KAGKTPQ 69
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 61.1 bits (148), Expect = 1e-09
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 23/157 (14%)
Query: 17 SAWYDSNIFKAEN--GKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
W + F N KNKK Y + P+ +G H GHL +I D V R+ G+SV
Sbjct: 83 KYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSV 142
Query: 75 LHPMGWDAFGMPAE-NAAREHNVHPK------------------MWTYQNIKVMRKQLQS 115
GWD G+P E +E+N++ K + Y N V K ++
Sbjct: 143 ERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWV--KTVER 200
Query: 116 IGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVR 152
IG ID+ D+ T D + +F + K+N + +
Sbjct: 201 IGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237
Score = 47.3 bits (112), Expect = 2e-05
Identities = 59/245 (24%), Positives = 90/245 (36%), Gaps = 79/245 (32%)
Query: 430 RDWCISRQRSWGCPIPVIHCQK-----C--GIVELPK-------EDLPVQLPEDLDFTLP 475
+DWCISR R WG PIP+ +K C I L + DL + ++ P
Sbjct: 569 KDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNP 628
Query: 476 GNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWF 535
+ +P K+I + D + +S M Y H KE + F
Sbjct: 629 KG--KTYPKLKRI------------PEVFDCWFESG--SMPYAKVHYPFSTEKEDFHKIF 672
Query: 536 PVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDE-PFKRLFTQGMVVHETYYQLEGIK 594
P D G++ R + + L I + D+ PFK L G+V
Sbjct: 673 PADFIAEGLDQ-------TRGWFYTLLVISTLLFDKAPFKNLICNGLV------------ 713
Query: 595 KKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTAR 654
L+ + K KMSK KN DP+ ++ YGAD+ R
Sbjct: 714 ----------------------LASDGK-------KMSKRLKNYPDPLYILDKYGADSLR 744
Query: 655 LFVLS 659
L++++
Sbjct: 745 LYLIN 749
Score = 41.5 bits (97), Expect = 0.001
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQ-KNWI 225
WRSD P+ R++P WF ++S+ + EL+ + ET P +K + NWI
Sbjct: 517 WRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWI 565
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 51.7 bits (125), Expect = 9e-07
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSD---SPPDRDIIWSNKGVDSTYQFIQQIW 685
EKMSKS N ++K Y + R F+LS SP + +S + ++ ++
Sbjct: 265 EKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLN----FSEEALEQA----KKAL 316
Query: 686 RLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQN-LSFNKAVANIHELVNVISKPL 744
+YNA E T+ + D +L+++ +F ER E + + +A+A + EL I++ L
Sbjct: 317 ERLYNALAE--TALGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRAL 374
Query: 745 MEIAKKKSNADRISTIRYILE 765
K+ + A + +R + +
Sbjct: 375 ETKDKEAAAA-LAALLRALAD 394
Score = 39.7 bits (94), Expect = 0.003
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 20/81 (24%)
Query: 47 GNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAEN----------AAREHNV 96
H+GH R++V+ DV+ R++R GY V + N A E
Sbjct: 35 DYAHIGHARSFVVFDVLRRYLRYLGYKVTY----------VRNITDIDDKIIKRANEEGE 84
Query: 97 HPKMWTYQNIKVMRKQLQSIG 117
K T + I + + ++
Sbjct: 85 SIKELTERYIAAFHEDMDALN 105
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 48.2 bits (116), Expect = 9e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
P+G +H+GHLR+ VIGD +AR + +GY V
Sbjct: 122 PTGPLHVGHLRSAVIGDALARILEFAGYDV 151
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 46.6 bits (111), Expect = 3e-05
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP 662
KMSKS KN DP +VI YGAD RL+ L +SP
Sbjct: 614 KMSKSLKNYPDPNEVIDKYGADALRLY-LINSP 645
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 2 ETRSYS-PQETDSIWQSAWYDSNIFKA--ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYV 58
E + +S P++ + I W + + FK + + +Y + P+ +G H GH+
Sbjct: 4 EGKDFSFPKQEEKILS-LWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGT 62
Query: 59 IGDVVARFMRASGYSVLHPMGWDAFGMPAEN 89
I D+V R+ +G+ V GWD G+P E
Sbjct: 63 IKDIVTRYQSMTGHHVTRRFGWDCHGLPVEY 93
Score = 38.9 bits (91), Expect = 0.006
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 430 RDWCISRQRSWGCPIPV 446
RDW +SR R WG P+P+
Sbjct: 465 RDWAVSRSRFWGTPLPI 481
Score = 37.4 bits (87), Expect = 0.017
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 178 WRSDAPVEQRSLPQWFFKISDLSQELLDSIETLSEW-PEKVK 218
WRSD P+ R++P WF K+ ++ LL++ + W P+ VK
Sbjct: 413 WRSDTPLIYRAVPSWFVKVEEIKDRLLEN-NKQTYWVPDYVK 453
>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 46.6 bits (111), Expect = 3e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 16 QSAWYDSNIFKAENGKNK----KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASG 71
Q W + +F+AE G +K+F +PY +G +H+GH + + A + R G
Sbjct: 23 QKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRG 82
Query: 72 YSVLHPMGWDAFGMPAENAA 91
+VL P + GMP + +A
Sbjct: 83 ANVLLPFAFHCTGMPIKASA 102
Score = 40.8 bits (96), Expect = 0.002
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQQ----- 683
EKMSKS N + + I+ + AD R F L+D+ GVD F+ +
Sbjct: 717 EKMSKSTGNFLTLRQAIEEFSADATR-FALADA---------GDGVDDA-NFVFETANAA 765
Query: 684 IWRL---------IYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVAN 732
I RL + A+ L+T ST D ++ + E+NY+ + F +A+ +
Sbjct: 766 ILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKS 825
Query: 733 -IHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECW-QLLGNAG 790
++L ++ ++ +R R++ + +++P+ PH AE W ++L G
Sbjct: 826 GFYDLQA--ARDEYRLSCGSGGMNRDLVWRFM-DVQTRLITPICPHYAEHVWREILKKEG 882
Query: 791 LVAQQKWP---KLDPIL 804
WP + D L
Sbjct: 883 FAVTAGWPVAGEPDLTL 899
>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori.
Length = 566
Score = 46.2 bits (110), Expect = 3e-05
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 31 KNKKKYFVLEMF--PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVL 75
K K ++ F P+G +H+GHLRN +IGD +AR + GY V+
Sbjct: 107 KKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 45.1 bits (106), Expect = 8e-05
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 42/227 (18%)
Query: 630 KMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQFIQ------- 682
KM KS N ++P ++++ +G D R F L R++ + N G S +FI+
Sbjct: 366 KMGKSLGNTLEPFELVQKFGPDAVRYFFL------REVEFGNDGDYSEDRFIKIVNAHLA 419
Query: 683 ---------QIWRLIYNAKDELQTSST--KKDISLISKSTKFLERIEENYQNLSFNKAVA 731
+ L N + L ST + + L K +E+ + NY+NLS + A
Sbjct: 420 NTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACE 479
Query: 732 NIHELVNVISKPLMEIA----------KKKSNADRISTIRYILEKLIIMMSPMIPHLAEE 781
+ E+ N + + + A + A + I ++ + + +SP+ P L+
Sbjct: 480 AVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLR 539
Query: 782 CWQLLG------NAGLVAQQKWPKLD--PILEVNTDIILPIQVNGKK 820
+ LG N+ + KW L ++E + + I++N +K
Sbjct: 540 IYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNPEK 586
>gnl|CDD|177924 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 44 YPSGNI----HMGHLRNYVIGDVVARFMRASGYSVL---HPMGWDA-FGM 85
+ S NI H+GHLR+ +IGD +AR + SG VL H W FGM
Sbjct: 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGM 172
>gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including
Methanococcus jannaschii, are not found, although
biochemical evidence suggests that tRNA(Cys) in these
species are charged directly with Cys rather than
through a misacylation and correction pathway as for
tRNA(Gln).
Length = 465
Score = 40.1 bits (94), Expect = 0.003
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 49 IHMGHLRNYVIGDVVARFMRASGYSV 74
H+GH R ++ DV+ R++R GY V
Sbjct: 35 CHIGHARTAIVFDVLRRYLRYLGYKV 60
Score = 36.2 bits (84), Expect = 0.035
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLS---DSPPDRDIIWSNKGVDSTYQFIQQIW 685
EKMSKS N V+K+Y + R F+LS SP D +S + +++ +++++
Sbjct: 264 EKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLD----FSEELLEAAKNALERLY 319
Query: 686 RLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQ-NLSFNKAVANIHELVNVISKPL 744
+ + L S + + +F R E +L+ A+A + EL I+
Sbjct: 320 KALRVLDTTLAYSGNQSLNKFPDEK-EFEARFVEAMDDDLNTANALAVLFELAKSINLTF 378
Query: 745 MEIAKKKSNADRISTIRYILEKL 767
+ A + + + L L
Sbjct: 379 VSKADAALLIEHLIFLESRLGLL 401
>gnl|CDD|178220 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 38.6 bits (90), Expect = 0.007
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 33 KKKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENAA 91
K+ + PY + H+G++ V+ DV AR+ R GY+ ++ G D +G E A
Sbjct: 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKA 75
Query: 92 REHNVHPK 99
E N PK
Sbjct: 76 LEENCTPK 83
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 35.3 bits (81), Expect = 0.068
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 50 HMGHLRNYVIGDVVARFMRASGYSVLHPM 78
H+G+LR YV D + R + GY V H M
Sbjct: 38 HIGNLRTYVFQDTLRRTLHFLGYRVTHVM 66
>gnl|CDD|185597 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 34.6 bits (80), Expect = 0.11
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 50 HMGHLRNYVIGDVVARFMRAS-GYSVLHPMG 79
H+GH R YV D++ R + GY V + M
Sbjct: 75 HLGHARTYVTFDIIRRILEDYFGYDVFYVMN 105
Score = 30.8 bits (70), Expect = 1.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVL 658
KMSKS KN I + + Y A RL L
Sbjct: 314 LKMSKSLKNFITIRQALSKYTARQIRLLFL 343
>gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set.
Length = 515
Score = 33.7 bits (77), Expect = 0.19
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAF 83
PSG+IH+G+ R + D +AR +R SG D +
Sbjct: 28 PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNY 66
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 31.4 bits (71), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 50 HMGHLRNYVIGDVVARFMRASGYSV 74
H+GH R YV DV+ R+++ GY V
Sbjct: 95 HIGHARVYVTFDVLYRYLKHLGYEV 119
Score = 29.9 bits (67), Expect = 3.0
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSD---SPPDRDIIWSNKGVDSTYQFIQQIW 685
EKMSKS N +VI Y RLF+L SP + + + + +I Q
Sbjct: 322 EKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIF-YIYQTL 380
Query: 686 RLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQ-----NLSFNKAVANIHELVNVI 740
+ + ++ K S+ + + + + + +L A+A + E + I
Sbjct: 381 HDCEESLQQHDSTFEKD--SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTI 438
Query: 741 SKPLMEIAKKKSNADRISTIRYILEKLI 768
+ L+ K K R+ ++ LEK I
Sbjct: 439 ND-LLHTRKGKKQEKRLESLA-ALEKKI 464
>gnl|CDD|179109 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 30.9 bits (71), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
PSG H+G+ R D+V R +R G
Sbjct: 33 PSGLPHIGNFREVARTDMVRRALRDLGIKT 62
>gnl|CDD|180857 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 31.2 bits (71), Expect = 1.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 703 DISLISKSTKFLERIEENY-QNLSFNKAVANIHELVNVISKPLMEIAKK 750
D++ ISK + +EE Y +N SF + + + I K L +IAKK
Sbjct: 386 DVNAISKLIPNNQSLEEAYDKNKSFFRELI---SKGDPIYKKLYKIAKK 431
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 30.5 bits (68), Expect = 1.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 50 HMGHLRNYVIGDVVARFMRASGYSVLH 76
H+GH R V+ D++AR++R GY + +
Sbjct: 263 HLGHARVMVVFDMIARWLRECGYPLTY 289
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase.
Length = 405
Score = 30.2 bits (68), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 344 CPFADQRD-------MDFAKKYGLPII-PIMKRSINHSQDI 376
C FA+ D + A+KY + I+ PI++R +NH + +
Sbjct: 150 CEFAEPVDGESTKFLQELARKYNMVIVSPILERDVNHGETL 190
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 30.1 bits (68), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 44 YPSGNI----HMGHLRNYVIGDVVARFMRASGYSVL 75
Y S NI MGHLR+ +IG+ + GY V+
Sbjct: 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVV 154
>gnl|CDD|150933 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 448
Score = 30.0 bits (68), Expect = 3.1
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 705 SLISKSTKFLERIE-------ENYQNLSFNKAVANIHELVNVISKPL----MEIAKKKSN 753
S + TKFL +E N++ L K + I L + L +E + + +
Sbjct: 231 SALKLHTKFLATLEPSNPFFALNFKKLK--KDITKIRSLYAKLEADLGFLKLEFSYGRLS 288
Query: 754 ADRISTIRYILEKLIIMMS 772
AD + TIR +L LI +
Sbjct: 289 ADDLKTIRRLLRNLISPVV 307
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase.
Members of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last
step in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog
to glutathione.
Length = 411
Score = 29.7 bits (67), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
PY + H+GH Y+ D+V R R +G+ V
Sbjct: 46 PYDA--THLGHAATYLTFDLVNRVWRDAGHRV 75
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 29.5 bits (67), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
PY + H+GH Y+ D+V R R +G+ V
Sbjct: 19 PYDA--THLGHAATYLAFDLVNRVWRDAGHDV 48
>gnl|CDD|152687 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 29.5 bits (66), Expect = 4.4
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 661 SPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEEN 720
+ D++ K + S +QQ L+ N K + T + K D S I K K L+ I+
Sbjct: 1123 KLANLDVV--KKAI-SNLNNLQQEVTLLRNEKIRMHTGTDKVDFSDIEKLEKQLQVIDTK 1179
Query: 721 YQNLSFNKAVANIHELVNVISKPLMEIAKKKSN-ADRISTIRYI 763
+ + I L K E+ K + D + I +
Sbjct: 1180 LADAYLLEVTKQISALEKEKPKNQSELKSKIAKFFDTTADIEVL 1223
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 29.0 bits (65), Expect = 4.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 50 HMGHLRNYVIGDVVARFMRASGYSVLHPM 78
H+G+ R Y+ D++ + +R Y+V + M
Sbjct: 36 HIGNFRTYIFEDLLIKSLRLLKYNVNYAM 64
>gnl|CDD|179170 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 29.3 bits (67), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 626 GPLEKMSKS---KKNVI---DPMKV----IKSYGADTARLFVLSDSPPDR 665
GP +KMSKS N I D K IK D+ RL + P++
Sbjct: 189 GPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERLREIRYDLPNK 238
>gnl|CDD|181468 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 28.7 bits (65), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 28 ENGKNKKKYFVLEMFPYPSGNIHMGHL 54
E+ + K Y E PSG IH+GHL
Sbjct: 26 ESKEEPKAYIGFE----PSGKIHLGHL 48
>gnl|CDD|151032 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 28.7 bits (65), Expect = 7.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 100 MWTYQNIKVMRKQLQSIGLSID 121
MWT Q + + +L++ GL +D
Sbjct: 5 MWTPQQLPEIAARLKAYGLELD 26
>gnl|CDD|178851 PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase; Reviewed.
Length = 159
Score = 28.2 bits (64), Expect = 8.8
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 663 PDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEENYQ 722
PD D + KG DS ++++ RL+ + DI++I++ K IEE
Sbjct: 64 PDTDPAF--KGADSR-VLLREVARLLRAKGYRIGNV----DITIIAQRPKMAPHIEEMRA 116
Query: 723 NLSFNKAVANIH-ELVNV 739
N++ I + VNV
Sbjct: 117 NIA---EDLGIPLDDVNV 131
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 14,464,232
Number of extensions: 961529
Number of successful extensions: 2134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 146
Length of query: 869
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 767
Effective length of database: 3,790,457
Effective search space: 2907280519
Effective search space used: 2907280519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)