HHsearch alignment for GI: 254780803 and conserved domain: PRK13731
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional.
Probab=90.63 E-value=0.67 Score=25.15 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCEEE-EEEEEECCC------------C----HHHHHHHHHHHHH
Q ss_conf 91578899999999999983685143-3415776720223-257840777------------4----1448999999973
Q gi|254780803|r 1 MLYKRILRILVVFNFFLLINSCSVYP-FYYLKNQDRTEYI-HPIKVLVVS------------K----NNKNEIYRSINFL 62 (165)
Q Consensus 1 ml~~ri~k~l~~~~~~~~ls~CGf~P-lY~~~~~~~~~~l-~~I~i~~~~------------~----r~~~~i~n~L~~~ 62 (165)
T Consensus 1 m~~kk~~~~~~~-~~~l~lsGC~a~~tai~krnL~VqTkMS~TIfLdP~s~ktVyv~vrNTS~~~~~~l~~~i~~~L~ak 79 (243)
T PRK13731 1 MKTKKLMMVALV-SSTLALSGCGAMSTAIKKRNLEVKTQMSETIWLEPASERTVFLQIKNTSDKDMSGLQGKIADAVKAK 79 (243)
T ss_pred CCHHHHHHHHHH-HHHHHHCCHHHHHHHHHHCCCCEECEECCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 933775799999-9999971568767787735752222000438866854557999985178772456789999999858
Q ss_pred C---CCCCCCCCEEEEEEEC
Q ss_conf 1---4777767168999710
Q gi|254780803|r 63 T---STVRTKNLYQLEVNID 79 (165)
Q Consensus 63 ~---~~~~~~~~y~l~i~~~ 79 (165)
T Consensus 80 GY~iv~~P~~A~Y~LQaNVL 99 (243)
T PRK13731 80 GYQVVTSPDKAYYWIQANVL 99 (243)
T ss_pred CEEEECCHHHCEEEEEEEEH
T ss_conf 90986786576077274240