Query         gi|254780803|ref|YP_003065216.1| hypothetical protein CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 165
No_of_seqs    110 out of 354
Neff          8.0 
Searched_HMMs 39220
Date          Sun May 29 18:03:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780803.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG5468 Predicted secreted (pe  99.9 7.4E-24 1.9E-28  165.4  18.6  160    4-163     2-171 (172)
  2 pfam09927 DUF2159 Predicted se  99.9 3.7E-21 9.5E-26  148.9  15.7  118   41-158     1-120 (120)
  3 PRK10796 LPS-assembly lipoprot  98.8 2.1E-06 5.4E-11   58.7  16.7  153    5-162     2-164 (196)
  4 COG2980 RlpB Rare lipoprotein   98.7   1E-06 2.6E-11   60.7  14.1  150    7-160     4-160 (178)
  5 pfam04390 RplB Rare lipoprotei  98.1  0.0004   1E-08   44.9  15.2  124   36-159    11-141 (145)
  6 PRK11627 hypothetical protein;  94.9     0.3 7.7E-06   27.2  12.1  115    6-126     2-152 (192)
  7 pfam05643 DUF799 Putative bact  94.1    0.45 1.1E-05   26.2  11.3   33   96-128   127-159 (215)
  8 PRK10802 peptidoglycan-associa  93.2   0.075 1.9E-06   31.0   2.8   28    1-28      1-28  (173)
  9 PRK12700 flgH flagellar basal   92.1    0.14 3.6E-06   29.3   3.0   25    1-25      1-25  (230)
 10 PRK13731 conjugal transfer sur  90.6    0.67 1.7E-05   25.2   5.2   78    1-79      1-99  (243)
 11 PRK10866 outer membrane protei  89.7    0.24 6.2E-06   27.8   2.3   22    3-24      1-22  (243)
 12 PRK00178 tolB translocation pr  85.6     2.7   7E-05   21.4  10.0  134    7-158     4-155 (433)
 13 PRK01622 OxaA-like protein pre  84.7     1.1 2.9E-05   23.8   3.4   27    1-27      2-29  (266)
 14 TIGR03302 OM_YfiO outer membra  82.7    0.79   2E-05   24.7   1.9   20    6-25      1-20  (235)
 15 COG5567 Predicted small peripl  81.9     1.1 2.8E-05   23.8   2.4   29    3-31      1-30  (58)
 16 TIGR02887 spore_ger_x_C germin  79.8     1.1 2.9E-05   23.7   1.9   17    6-22      2-18  (400)
 17 PRK01742 tolB translocation pr  79.5     4.7 0.00012   20.0   9.6  140    1-158     1-161 (430)
 18 PRK02889 tolB translocation pr  79.4     4.8 0.00012   19.9   9.8   45   98-158   112-156 (430)
 19 PRK10525 cytochrome o ubiquino  78.4     1.9 4.7E-05   22.4   2.6   31    1-32      4-34  (305)
 20 TIGR03525 GldK gliding motilit  76.0     1.4 3.7E-05   23.1   1.5   19    6-24      1-19  (449)
 21 PRK11372 lysozyme inhibitor; P  75.8     2.1 5.3E-05   22.1   2.3   22    6-27      2-24  (109)
 22 PRK02463 OxaA-like protein pre  74.1     3.2 8.1E-05   21.0   2.9   25    3-27      5-29  (307)
 23 TIGR03516 ppisom_GldI peptidyl  73.4     4.9 0.00013   19.9   3.7   31   97-128    90-120 (177)
 24 PRK02998 prsA peptidylprolyl i  71.6     4.1 0.00011   20.3   3.0   23    1-23      1-23  (283)
 25 PRK13684 Ycf48-like protein; P  71.2     6.9 0.00018   18.9   4.0   47    1-47      3-56  (333)
 26 PRK00249 flgH flagellar basal   71.1     2.5 6.4E-05   21.6   1.8   21    5-25      2-22  (231)
 27 PRK12696 flgH flagellar basal   70.7     3.1   8E-05   21.1   2.2   20    5-24      1-20  (238)
 28 PRK11023 hypothetical protein;  68.5     3.8 9.6E-05   20.6   2.2   19    5-23      2-20  (191)
 29 TIGR03524 GldJ gliding motilit  68.3     5.2 0.00013   19.7   2.9   25    1-25      1-25  (559)
 30 PRK12788 flgH flagellar basal   68.0     2.7 6.8E-05   21.5   1.4   18    7-24      1-18  (231)
 31 TIGR03659 IsdE heme ABC transp  67.3     3.9 9.9E-05   20.5   2.1   22    4-25      1-22  (289)
 32 COG3017 LolB Outer membrane li  66.9     5.4 0.00014   19.6   2.8   23    1-23      1-23  (206)
 33 PRK10533 putative lipoprotein;  66.7     4.5 0.00011   20.1   2.3   25    8-32      5-30  (171)
 34 pfam01514 YscJ_FliF Secretory   66.5     6.8 0.00017   19.0   3.2   26    7-32      9-35  (206)
 35 PRK04405 prsA peptidylprolyl i  66.4     5.5 0.00014   19.6   2.7   22    3-24      5-26  (298)
 36 PRK12450 foldase protein PrsA;  65.9     5.6 0.00014   19.5   2.7   22    3-24      4-25  (309)
 37 PRK09837 copper/silver efflux   64.5     4.9 0.00013   19.8   2.2   21   11-31      7-27  (460)
 38 PRK03002 prsA peptidylprolyl i  64.2     5.6 0.00014   19.5   2.4   23    1-24      1-23  (285)
 39 PRK02944 OxaA-like protein pre  63.4     7.2 0.00018   18.9   2.8   22    3-24      2-23  (255)
 40 PRK12698 flgH flagellar basal   62.6     4.6 0.00012   20.0   1.7   28   95-122   133-161 (224)
 41 PRK09578 periplasmic multidrug  62.2     7.8  0.0002   18.6   2.8   20    4-23      5-24  (385)
 42 TIGR03511 GldH_lipo gliding mo  62.1      12  0.0003   17.5   4.9   99    5-118     2-109 (156)
 43 PRK10175 hypothetical protein;  61.9     2.9 7.5E-05   21.2   0.6   18    7-24      1-18  (75)
 44 PRK03629 tolB translocation pr  61.0      12 0.00032   17.4   9.8  136    3-158     1-157 (430)
 45 pfam03304 Mlp Mlp lipoprotein   60.8       4  0.0001   20.4   1.2   19    5-24      2-20  (150)
 46 PRK09859 multidrug efflux syst  59.1     8.6 0.00022   18.4   2.6   25    1-26      1-25  (385)
 47 PRK13616 lipoprotein LpqB; Pro  59.0       9 0.00023   18.2   2.7   29    1-29      1-29  (590)
 48 TIGR02747 TraV type IV conjuga  58.8     6.3 0.00016   19.2   1.9   21    7-27      4-26  (174)
 49 PRK11459 multidrug resistance   58.3     7.8  0.0002   18.6   2.3   30    1-30      1-30  (478)
 50 PRK09915 putative outer membra  58.2     9.1 0.00023   18.2   2.6   31    1-31      1-33  (488)
 51 pfam04507 DUF576 Protein of un  57.4     5.3 0.00014   19.6   1.3   21    5-25      6-26  (257)
 52 PRK04792 tolB translocation pr  56.2      15 0.00038   16.9   8.9  144   12-158     9-177 (450)
 53 TIGR01074 rep ATP-dependent DN  55.9      15 0.00039   16.9   3.5   75   17-111    39-114 (677)
 54 COG3056 Uncharacterized lipopr  55.1      16  0.0004   16.8  11.7  127    4-133    13-175 (204)
 55 TIGR03352 VI_chp_3 type VI sec  55.0     3.7 9.5E-05   20.6   0.2   21    8-28      2-22  (146)
 56 PRK04043 tolB translocation pr  54.9      16  0.0004   16.8  11.7   46   98-158   102-147 (419)
 57 TIGR01433 CyoA ubiquinol oxida  54.1       7 0.00018   18.9   1.5   22   11-32      2-23  (228)
 58 COG4594 FecB ABC-type Fe3+-cit  53.8      11 0.00028   17.7   2.5   25    1-25      1-25  (310)
 59 pfam07901 DUF1672 Protein of u  53.2     8.7 0.00022   18.3   1.8   20    8-27      4-23  (304)
 60 PRK11443 hypothetical protein;  52.9       8  0.0002   18.5   1.6   21    7-27      1-21  (120)
 61 PRK01326 prsA foldase protein   52.8      13 0.00032   17.4   2.6   21    5-25      4-24  (310)
 62 COG4669 EscJ Type III secretor  52.2      12  0.0003   17.5   2.4   26    4-30      2-27  (246)
 63 KOG0604 consensus               51.6     9.2 0.00024   18.2   1.8   16   21-36    257-272 (400)
 64 COG3317 NlpB Uncharacterized l  51.4      12  0.0003   17.6   2.3   25    4-28      2-26  (342)
 65 TIGR02898 spore_YhcN_YlaJ spor  51.4      10 0.00026   17.9   2.0   17   10-26      3-21  (185)
 66 PRK11548 hypothetical protein;  51.3      11 0.00029   17.6   2.2   16   14-29     12-29  (113)
 67 PRK10477 outer membrane lipopr  51.2      11 0.00028   17.7   2.1   21    4-24      1-21  (177)
 68 COG5645 Predicted periplasmic   51.0     5.6 0.00014   19.5   0.6   17    8-24      3-19  (80)
 69 COG4939 Major membrane immunog  51.0     9.5 0.00024   18.1   1.7   18    9-26      6-23  (147)
 70 pfam03886 DUF330 Protein of un  50.8      18 0.00046   16.4  11.7   92   49-153    59-159 (160)
 71 PRK10838 spr putative outer me  50.5      13 0.00033   17.3   2.4   27    3-29      7-33  (188)
 72 COG3417 FlgN Collagen-binding   50.2      13 0.00032   17.3   2.3   20    5-24      3-22  (200)
 73 COG4808 Uncharacterized protei  50.2      15 0.00038   16.9   2.7   22    3-24      4-25  (152)
 74 COG3065 Slp Starvation-inducib  50.1      15 0.00038   16.9   2.7   25    3-27      3-28  (191)
 75 PRK11063 metQ DL-methionine tr  49.7      17 0.00043   16.6   2.8   13   12-24     13-25  (271)
 76 PRK12699 flgH flagellar basal   49.4      11 0.00027   17.8   1.8   21    4-25     16-36  (246)
 77 pfam08139 LPAM_1 Prokaryotic m  48.8      12 0.00031   17.5   2.0   19    7-25      2-20  (26)
 78 PRK13883 conjugal transfer pro  48.2      12 0.00029   17.6   1.8   25    6-30      1-25  (156)
 79 pfam06474 MLTD_N MLTD_N.        47.6     8.9 0.00023   18.3   1.2   19    8-26      2-20  (93)
 80 TIGR02722 lp_ uncharacterized   47.4      18 0.00045   16.4   2.7   30    4-33      1-31  (215)
 81 PRK10449 heat-inducible protei  47.4      11 0.00027   17.8   1.5   21    7-27      2-22  (140)
 82 PRK10797 glutamate and asparta  46.9      21 0.00054   16.0   3.0   25    1-25      1-25  (302)
 83 COG4764 Uncharacterized protei  43.6      15 0.00039   16.8   1.9   21    7-27      5-25  (197)
 84 TIGR00752 slp outer membrane l  42.8      12  0.0003   17.5   1.2   23    6-28      2-24  (190)
 85 PRK10760 murein hydrolase B; P  42.1      13 0.00034   17.2   1.4   17  117-134   326-342 (357)
 86 PRK06760 hypothetical protein;  42.0     7.1 0.00018   18.9  -0.0   23    3-25      1-24  (223)
 87 PRK12407 flgH flagellar basal   41.8      12  0.0003   17.5   1.1   16    8-23      2-17  (220)
 88 pfam08085 Entericidin Enterici  41.5      22 0.00056   15.9   2.4   19    4-22      2-21  (42)
 89 PRK11162 mltA murein transglyc  41.5      18 0.00046   16.4   2.0   22    6-27      2-23  (362)
 90 PRK00022 lolB outer membrane l  41.3      17 0.00042   16.6   1.7   16   12-27      8-23  (203)
 91 TIGR01742 SA_tandem_lipo Staph  40.9      14 0.00036   17.1   1.3   24    1-24      1-26  (267)
 92 pfam06085 Rz1 Lipoprotein Rz1   40.7      15 0.00038   16.9   1.5   24    5-28      3-26  (59)
 93 TIGR02643 T_phosphoryl thymidi  40.7      15 0.00039   16.8   1.5   22   13-34     95-117 (440)
 94 TIGR02544 III_secr_YscJ type I  40.6      24 0.00061   15.7   2.5   24    8-31      3-27  (203)
 95 pfam02352 Decorin_bind Decorin  40.0      23 0.00059   15.7   2.3   22    1-25      1-23  (166)
 96 pfam06604 consensus             39.9      24 0.00062   15.6   2.4   22    1-23      1-22  (181)
 97 COG3168 PilP Tfp pilus assembl  38.3      13 0.00034   17.2   0.9   18    8-25      2-19  (170)
 98 PRK03095 prsA peptidylprolyl i  37.7      25 0.00065   15.5   2.2   12   13-24     10-21  (287)
 99 pfam06291 Lambda_Bor Bor prote  37.0      20 0.00052   16.1   1.7   23    7-29      2-24  (97)
100 pfam11153 DUF2931 Protein of u  36.6      17 0.00043   16.6   1.2   16    8-23      2-17  (202)
101 pfam11254 DUF3053 Protein of u  35.7      26 0.00067   15.4   2.1   20    5-24      2-21  (229)
102 COG2834 LolA Outer membrane li  33.8      30 0.00077   15.0   2.1   26    1-26      1-26  (211)
103 PRK11653 hypothetical protein;  33.3      27 0.00069   15.3   1.8   23    5-27     20-42  (223)
104 pfam07854 DUF1646 Protein of u  32.9      31  0.0008   14.9   2.1   24    4-28    226-249 (347)
105 PRK10270 hypothetical protein;  32.4      36 0.00091   14.6   3.0   20    3-22      1-20  (340)
106 pfam12262 Lipase_bact_N Bacter  32.2      31 0.00079   15.0   2.0   20    4-24      2-21  (269)
107 PRK11138 outer membrane protei  32.1      34 0.00086   14.8   2.1   22    1-24      1-22  (394)
108 TIGR01781 Trep_dent_lipo Trepo  31.9      35  0.0009   14.6   2.2   22    4-25      3-24  (463)
109 pfam11873 DUF3393 Domain of un  31.9      18 0.00045   16.5   0.6   19    8-26      2-20  (200)
110 PRK06193 hypothetical protein;  31.0      36 0.00091   14.6   2.1   21    5-25      2-22  (211)
111 PRK11671 mltC murein transglyc  31.0      29 0.00073   15.2   1.6   17    6-22      2-18  (360)
112 PRK09967 putative outer membra  31.0      31  0.0008   14.9   1.8   10   15-24     12-21  (160)
113 TIGR01329 cysta_beta_ly_E cyst  30.7      24 0.00062   15.6   1.2   17   15-31    274-290 (415)
114 PRK10510 putative outer membra  30.6      38 0.00097   14.4   2.5   24    4-27      3-26  (219)
115 COG5510 Predicted small secret  29.2      40   0.001   14.3   2.6   23    1-23      1-23  (44)
116 PRK10215 hypothetical protein;  29.0      32 0.00082   14.9   1.6   24    4-27      6-30  (219)
117 PRK11189 lipoprotein NlpI; Pro  28.7      40   0.001   14.3   2.1   20    4-23      2-21  (297)
118 TIGR03529 GldK_short gliding m  28.2      18 0.00046   16.4   0.2   21    5-25      1-21  (344)
119 TIGR02917 PEP_TPR_lipo putativ  27.8      43  0.0011   14.1   2.4   17    6-22      4-21  (924)
120 pfam01298 Lipoprotein_5 Transf  27.7      30 0.00076   15.1   1.2   21    1-23      1-21  (589)
121 COG1704 LemA Uncharacterized c  27.0      37 0.00095   14.5   1.6   26    4-29      2-27  (185)
122 PRK10781 rcsF outer membrane l  27.0      32 0.00082   14.9   1.3   16    8-23      2-17  (133)
123 pfam12273 RCR Chitin synthesis  26.8      43  0.0011   14.1   1.9   22   10-31      9-38  (124)
124 TIGR03300 assembly_YfgL outer   26.3      31 0.00079   15.0   1.1   17    8-24      2-18  (377)
125 KOG2791 consensus               26.2      38 0.00097   14.4   1.6   24    1-29      2-25  (455)
126 PRK09861 cytoplasmic membrane   25.9      46  0.0012   13.9   2.9   19    6-24      8-26  (272)
127 COG3218 ABC-type uncharacteriz  25.6      47  0.0012   13.9  12.6  143    4-160     8-199 (205)
128 COG0386 BtuE Glutathione perox  25.5      17 0.00043   16.6  -0.3   12   19-30     34-45  (162)
129 COG3957 Phosphoketolase [Carbo  24.7      46  0.0012   13.9   1.8   16   16-31    232-247 (793)
130 pfam09716 ETRAMP Malarial earl  24.3      47  0.0012   13.9   1.7   25    5-31      2-26  (84)
131 KOG4544 consensus               24.1      24  0.0006   15.7   0.2   25    4-28     72-96  (144)
132 TIGR01734 D-ala-DACP-lig D-ala  24.0      50  0.0013   13.7   2.2   16   12-27     66-81  (513)
133 pfam11810 DUF3332 Domain of un  23.7      51  0.0013   13.7   2.1   19    4-22      2-20  (175)
134 COG5633 Predicted periplasmic   23.7      32 0.00082   14.9   0.8   16   12-27      7-22  (123)
135 PRK11669 pbpG D-alanyl-D-alani  22.9      53  0.0013   13.6   2.0   19   10-28      5-23  (308)
136 PRK10461 thiamine biosynthesis  22.9      53  0.0013   13.5   4.4   18    9-26      7-24  (351)
137 TIGR02522 pilus_cpaD pilus (Ca  22.7      50  0.0013   13.7   1.6   21   10-30      2-23  (211)
138 PRK10759 hypothetical protein;  22.7      50  0.0013   13.7   1.6   14   10-23      3-16  (106)
139 TIGR02521 type_IV_pilW type IV  22.5      40   0.001   14.3   1.1   23   12-34      2-25  (247)
140 PRK11397 dacD D-alanyl-D-alani  22.4      54  0.0014   13.5   2.5   25    1-25      1-26  (390)
141 PRK05137 tolB translocation pr  22.4      54  0.0014   13.5  10.0   45   98-158   117-161 (437)
142 TIGR03042 PS_II_psbQ_bact phot  22.3      54  0.0014   13.5   2.3   23    3-27      1-23  (142)
143 pfam03783 CsgG Curli productio  21.9      55  0.0014   13.4   8.5   84   71-154    89-199 (207)
144 pfam02402 Lysis_col Lysis prot  21.8      30 0.00075   15.1   0.3   16   12-27      9-24  (46)
145 pfam05715 zf-piccolo Piccolo Z  21.7      27 0.00068   15.4   0.1   10   19-28     33-42  (61)
146 COG4826 Serine protease inhibi  21.5      56  0.0014   13.4   2.5   56    9-64      3-58  (410)
147 pfam08627 CRT-like CRT-like. T  20.7      52  0.0013   13.6   1.4   11   19-29     93-103 (130)
148 PRK04168 hypothetical protein;  20.6      58  0.0015   13.3   1.6   21    3-23      4-24  (336)
149 PRK09558 ushA bifunctional UDP  20.6      59  0.0015   13.3   2.5   25    3-27      1-25  (551)
150 pfam04549 CD47 CD47 transmembr  20.5      59  0.0015   13.2   1.7   20    9-30    106-125 (156)
151 COG2859 Uncharacterized protei  20.4      45  0.0011   14.0   1.0   18    8-25      8-25  (237)

No 1  
>COG5468 Predicted secreted (periplasmic) protein [Function unknown]
Probab=99.93  E-value=7.4e-24  Score=165.44  Aligned_cols=160  Identities=21%  Similarity=0.352  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC--C-CCCEEEEEEECC
Q ss_conf             7889999999999998368514334157767202232578407774144899999997314777--7-671689997100
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTSTVR--T-KNLYQLEVNIDS   80 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~~~r~~~~i~n~L~~~~~~~~--~-~~~y~l~i~~~~   80 (165)
                      +|.+....+.+-+.++++|.+.|+|+....+....+..|+|.+..+|.||.+||+|.+.++...  + .+.|.|.+.+++
T Consensus         2 ~r~l~~va~a~S~~~l~~C~v~PLYsg~~a~~~~~LAsI~i~~a~~r~gqevRnqLifl~s~gaGePA~p~y~Lsl~vs~   81 (172)
T COG5468           2 KRTLARVALAFSLATLTACQVRPLYSGERAGTESGLASIEISPAGGRGGQEVRNQLIFLFSGGAGEPANPQYYLSLSVSR   81 (172)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
T ss_conf             01899999999999863114554135787530102026787426765889999999999616899988821689987431


Q ss_pred             CEEECC--C-----CCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             000000--2-----467650489999999999980589587742579998606776157799999999999999999999
Q gi|254780803|r   81 FTDHAI--S-----NAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENI  153 (165)
Q Consensus        81 ~~~~~i--~-----~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I  153 (165)
                      ....+.  +     .++.++..++.|+++|.|.|.++|+++..|..+..++||...|+|+.+++++|+|+|+++++||.|
T Consensus        82 ~a~~~~~~nv~~~~d~d~p~ag~v~mt~~y~Ltdak~G~~v~~Grr~vtas~D~p~QefA~irA~rDaenRAArElAe~i  161 (172)
T COG5468          82 FARGVRLVNVGNDTDRDRPSAGRVVMTADYVLTDAKDGAEVHKGRRSVTASFDRPRQEFAKIRAQRDAENRAARELAEII  161 (172)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             03457887405655578987757999865898754788776524315788734751478888887606778999999999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999740
Q gi|254780803|r  154 YIDIISFIRT  163 (165)
Q Consensus       154 ~~~i~~~l~~  163 (165)
                      ..+|+.||-.
T Consensus       162 ~ldlA~~L~r  171 (172)
T COG5468         162 QLDLAAWLGR  171 (172)
T ss_pred             HHHHHHHHHC
T ss_conf             8899999635


No 2  
>pfam09927 DUF2159 Predicted secreted (periplasmic) protein (DUF2159). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.88  E-value=3.7e-21  Score=148.92  Aligned_cols=118  Identities=14%  Similarity=0.215  Sum_probs=108.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEEEECCCEEEC-CCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             57840777414489999999731477-7767168999710000000-024676504899999999999805895877425
Q gi|254780803|r   41 PIKVLVVSKNNKNEIYRSINFLTSTV-RTKNLYQLEVNIDSFTDHA-ISNAFFKNIGRITLKAKYYFKEISGKNILYENN  118 (165)
Q Consensus        41 ~I~i~~~~~r~~~~i~n~L~~~~~~~-~~~~~y~l~i~~~~~~~~~-i~~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~  118 (165)
                      .|+|.+|++|.||.++|+|.+++|.+ +..|.|.|.+.++++...+ +..++.++++++.++++|+|++..+|++|.+|+
T Consensus         1 ~I~v~~~~~R~g~~lr~~L~~rLg~g~~~~p~Y~L~v~~~~~~~~~~i~~~~~~tr~~~~~~a~y~L~d~~tg~~v~sG~   80 (120)
T pfam09927         1 AIEVAPIDGRQGQLLRNALEDRLGGGRPAAPRYRLSVRLDTSRESLGIRPDNDTTRYNLTGTATYTLVDLATGKVVASGT   80 (120)
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCEEEEEE
T ss_conf             96880899934599999999984689999972899999988886434704895079999999999999889997999507


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7999860677615779999999999999999999999999
Q gi|254780803|r  119 TDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDII  158 (165)
Q Consensus       119 ~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I~~~i~  158 (165)
                      ++.+++|+..+++|++.++|+||++|++..|||+|..+|+
T Consensus        81 ~~~~tsy~~~~s~~A~~~A~~DA~~Rla~~lAd~I~~rLa  120 (120)
T pfam09927        81 VTSFTSYDATGSTYATLAAERDAEERLARELADQIVTRLA  120 (120)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999867476878999999999999999999999998629


No 3  
>PRK10796 LPS-assembly lipoprotein RlpB; Provisional
Probab=98.76  E-value=2.1e-06  Score=58.74  Aligned_cols=153  Identities=10%  Similarity=0.039  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECC--CCHHHHHHHHHHHHHC----CCCCC-CCCEEEEEE
Q ss_conf             8899999999999983685143341577672022325784077--7414489999999731----47777-671689997
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVV--SKNNKNEIYRSINFLT----STVRT-KNLYQLEVN   77 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~--~~r~~~~i~n~L~~~~----~~~~~-~~~y~l~i~   77 (165)
                      |.++.+++...+++++||||+ +-+  +..+...+..+.+...  .+...+.++.+|.-..    ..+.. ++.-.|.+.
T Consensus         2 r~l~~l~l~lavll~agCGFh-LRg--~~~lP~~l~tL~l~S~Dpys~Ltr~vr~qLr~~gV~lv~~~~~~~~vp~L~i~   78 (196)
T PRK10796          2 RYLATLLLSLAVLVTAGCGWH-LRG--TTQVPSEMKTMILDSGDPNGPLSRAVRNQLRLNGVELLDKDTTRKDVPSLRLG   78 (196)
T ss_pred             HHHHHHHHHHHHHHHCCCCCE-ECC--CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEC
T ss_conf             569999999999997476715-768--99998644458998048786799999999987795896378752458569971


Q ss_pred             ECC-CEEE-CCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             100-0000-00246765048999999999998058958774257999860677615-77999999999999999999999
Q gi|254780803|r   78 IDS-FTDH-AISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQ-FSQLRSHKSSEEKAIQELSENIY  154 (165)
Q Consensus        78 ~~~-~~~~-~i~~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~-f~~~~~e~~a~erl~~~lae~I~  154 (165)
                      ... .... .+..+|.+-.|.+..+|+|++.. - +..++.-+++..-+|-...+. -+...-++-..+-+=+.+|.+|.
T Consensus        79 ~e~~~~rtlSl~~~Gr~AEYeL~~~V~~~v~~-P-~~~~~p~~~~v~R~y~dnp~~aLAKs~E~elL~~EMR~~aA~Qii  156 (196)
T PRK10796         79 GVSISQDTASVFRNGQTAEYQMVMTVNAQVLI-P-GHDIYPISVKVFRSFFDNPQMALAKDNEQDMIVQEMYDQAAEQLI  156 (196)
T ss_pred             CCCCCCEEEEECCCCHHHHHEEEEEEEEEEEE-C-CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56555316988157465201788899999995-7-986056688999823479778762699999999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999974
Q gi|254780803|r  155 IDIISFIR  162 (165)
Q Consensus       155 ~~i~~~l~  162 (165)
                      .||+...+
T Consensus       157 RrL~~v~~  164 (196)
T PRK10796        157 RKLLSVRA  164 (196)
T ss_pred             HHHHHHHH
T ss_conf             99866408


No 4  
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=98.72  E-value=1e-06  Score=60.70  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE--EEEEECCCCHHHHHHHHHHHHHCCCC--CCCCCEEEEEEE-CCC
Q ss_conf             9999999999998368514334157767202232--57840777414489999999731477--776716899971-000
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIH--PIKVLVVSKNNKNEIYRSINFLTSTV--RTKNLYQLEVNI-DSF   81 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~--~I~i~~~~~r~~~~i~n~L~~~~~~~--~~~~~y~l~i~~-~~~   81 (165)
                      ++.++++....+|+||||+ +-+  +.+....+.  .++...+-+.....+++.|..-...-  ..+..-.|.+.. +..
T Consensus         4 L~~~lL~~a~~~L~aCGFh-LRg--~~~ip~~l~~l~l~s~d~y~~l~r~vrr~L~~n~v~vv~~~~~~p~Lri~se~~~   80 (178)
T COG2980           4 LKTLLLLAAVLLLAACGFH-LRG--TTQIPPELKTLSLESSDPYGPLTRAVRRQLRLNGVDVVDTAKDVPVLRILSESTS   80 (178)
T ss_pred             HHHHHHHHHHHHHHHCCEE-ECC--CCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEECCEECC
T ss_conf             5899999999997334534-317--8889941133155436898768999999999849645314778607886022215


Q ss_pred             -EEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             -000002467650489999999999980589587742579998606776157799999999-999999999999999999
Q gi|254780803|r   82 -TDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSS-EEKAIQELSENIYIDIIS  159 (165)
Q Consensus        82 -~~~~i~~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a-~erl~~~lae~I~~~i~~  159 (165)
                       ....+...|.+-.|.++++++|++.+- ++.+++.-+++++-+|--+....--..+|+.+ ..-+=+.+|++|..+|.+
T Consensus        81 ~~t~Si~~~gr~aEy~L~~~v~a~v~~~-~~~v~~p~~v~V~R~~~dn~~~aLaK~~E~e~l~~EMR~daa~QLvrrl~s  159 (178)
T COG2980          81 QRTASIFRQGRAAEYQLTLTVEAQVLDP-NDDVLYPISVKVFRSFFDNPNMALAKDEEREMLWNEMRRDAAEQLVRRLAS  159 (178)
T ss_pred             CCEEEEEHHHHHHHHHEEEEEEEEEECC-CCCCCCCEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5327863214666561246889999818-987568647899885105877775233789999999999999999999987


Q ss_pred             H
Q ss_conf             9
Q gi|254780803|r  160 F  160 (165)
Q Consensus       160 ~  160 (165)
                      -
T Consensus       160 l  160 (178)
T COG2980         160 L  160 (178)
T ss_pred             H
T ss_conf             1


No 5  
>pfam04390 RplB Rare lipoprotein B family. The Escherichia coli family member has been named Rare lipoprotein B (RplB). Thioglyceride and N-fatty acyl residues may be attached to the N-terminal cysteine, which is conserved in this family. RplB is speculated to be involved in cell duplication.
Probab=98.13  E-value=0.0004  Score=44.86  Aligned_cols=124  Identities=6%  Similarity=0.020  Sum_probs=80.9

Q ss_pred             CEEEEEEEEE--CCCCHHHHHHHHHHHHHCC--CCCCCCCEEEEEEECCCEEE--CCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             0223257840--7774144899999997314--77776716899971000000--0024676504899999999999805
Q gi|254780803|r   36 TEYIHPIKVL--VVSKNNKNEIYRSINFLTS--TVRTKNLYQLEVNIDSFTDH--AISNAFFKNIGRITLKAKYYFKEIS  109 (165)
Q Consensus        36 ~~~l~~I~i~--~~~~r~~~~i~n~L~~~~~--~~~~~~~y~l~i~~~~~~~~--~i~~~~~~~~~~~~~~~~y~L~~~~  109 (165)
                      ...+..+.+.  ++.......+++.|....-  ...++..+.|.+........  .++..|.+..|.+.++++|++.+..
T Consensus        11 ~~~~~~l~l~s~~~~~~l~~~l~~~L~~~gv~v~~~~~a~~~L~i~~~~~~rr~lSv~~~grv~EYeL~~~v~~~v~~~~   90 (145)
T pfam04390        11 PLALKTLYLSSSDPYSELTRELRRQLRLSGVKVVDDAAADPVLRLLSESRSRRTLSLFSQGRVAEYELTYTVNFRVRDPN   90 (145)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEEEEEEEEEECCC
T ss_conf             98867799993699987999999999887988826877856999824611079998747972102899999999998699


Q ss_pred             CCCEEEEEEEEEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89587742579998606776157-799999999999999999999999999
Q gi|254780803|r  110 GKNILYENNTDVTSLFDFSDQQF-SQLRSHKSSEEKAIQELSENIYIDIIS  159 (165)
Q Consensus       110 ~~~~i~~~~~~~~~~Y~~~~~~f-~~~~~e~~a~erl~~~lae~I~~~i~~  159 (165)
                      +...+-..++...-+|...++.. +...-|+-..+-+-+.+|.+|..||..
T Consensus        91 g~~l~~~~~i~~~R~~~~d~~~~Lak~~Ee~~L~~eM~~d~a~qIlrRL~~  141 (145)
T pfam04390        91 GELLIPPTTVEVRRDYLDDPNNALAKSQEEELLRREMRRDAAQQIIRRLAA  141 (145)
T ss_pred             CCCCCCCEEEEEEEEEECCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987138768999998412956762319999999999999999999999874


No 6  
>PRK11627 hypothetical protein; Provisional
Probab=94.87  E-value=0.3  Score=27.24  Aligned_cols=115  Identities=10%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCEE-------EEEC--CCCCCCEEEEEEEEEC----------------------CCCHHHHH
Q ss_conf             899999999999983685143-------3415--7767202232578407----------------------77414489
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSVYP-------FYYL--KNQDRTEYIHPIKVLV----------------------VSKNNKNE   54 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf~P-------lY~~--~~~~~~~~l~~I~i~~----------------------~~~r~~~~   54 (165)
                      ++|+++.+..+++|+||.=+|       -+..  .++....  ..+.+..                      +.......
T Consensus         2 mkk~~~~l~a~~lL~gCas~p~~l~l~P~~~~~~~~~~~~~--~~vsv~s~D~R~~~~va~~~~~g~~~~L~~s~~l~~~   79 (192)
T PRK11627          2 LKKILFPLVALFMLAGCATPPTTLEVSPKITLPQQDPSLMG--VTVSINGADQRQDQALAKVTRDNQLVTLTPSRDLRFL   79 (192)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC--EEEEEEEEECCCCCEEEEECCCCCEEEECCCCCHHHH
T ss_conf             28799999999999860699763786788766434554577--0599987753665326798069946770478688999


Q ss_pred             HHHHHHHHCCCC----CCCCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEEEEEEC-CCCCEEEEEEEEEEEEEC
Q ss_conf             999999731477----776716899971000000002467650489999999999980-589587742579998606
Q gi|254780803|r   55 IYRSINFLTSTV----RTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEI-SGKNILYENNTDVTSLFD  126 (165)
Q Consensus        55 i~n~L~~~~~~~----~~~~~y~l~i~~~~~~~~~i~~~~~~~~~~~~~~~~y~L~~~-~~~~~i~~~~~~~~~~Y~  126 (165)
                      +.+.|...+...    ++.....+.+.+.+-.   .+.+...-+|++...+...+.-. .+|.. +.+.+++..++.
T Consensus        80 lq~~l~~ql~sqG~~i~~~a~~~l~v~i~~l~---a~V~q~~~~y~i~t~v~i~I~v~~~ng~k-~tK~y~~~~~~e  152 (192)
T PRK11627         80 LQEVLEKQMTARGYMIGPNGAVNLQIIVNQLY---ADVSQGNVRYNIATKADISIIATAQNGNK-MTKNYRASYNVE  152 (192)
T ss_pred             HHHHHHHHHHHCCEEECCCCCCEEEEEHHHHC---CCCCCCEEEEEECCEEEEEEEEECCCCCE-EEEEEECCEECC
T ss_conf             99999999985881715887625999968931---60255504777524799999998378977-778872322115


No 7  
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=94.12  E-value=0.45  Score=26.20  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEEEEEECCC
Q ss_conf             999999999998058958774257999860677
Q gi|254780803|r   96 RITLKAKYYFKEISGKNILYENNTDVTSLFDFS  128 (165)
Q Consensus        96 ~~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~  128 (165)
                      ...++++++|+|..+|+++++|+.+....-+++
T Consensus       127 ~t~V~~~a~LvdlrTG~~LW~g~a~~~~~~~~~  159 (215)
T pfam05643       127 VTTVSAKARLVDSRNGKELWSGSASIREGSNNS  159 (215)
T ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEECCCCCCC
T ss_conf             379999999984567867653103400168888


No 8  
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=93.24  E-value=0.075  Score=30.96  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9157889999999999998368514334
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      |.+.|++|.+++...+++|++|+-+|--
T Consensus         1 M~~nk~~K~l~ia~~~l~LaACSS~~~~   28 (173)
T PRK10802          1 MQLNKVLKGLMIALPVMAIAACSSNKNA   28 (173)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9607899999999999999855799988


No 9  
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=92.07  E-value=0.14  Score=29.29  Aligned_cols=25  Identities=28%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             9157889999999999998368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |+++-++|+.+++.++++|+||.-.
T Consensus         1 ~~~~t~~Rl~~~~~~~~ll~GCa~~   25 (230)
T PRK12700          1 MMLKTVLRLPVCAALLALAAGCAMI   25 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9158899999999999997444689


No 10 
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=90.63  E-value=0.67  Score=25.15  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCEEE-EEEEEECCC------------C----HHHHHHHHHHHHH
Q ss_conf             91578899999999999983685143-3415776720223-257840777------------4----1448999999973
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYP-FYYLKNQDRTEYI-HPIKVLVVS------------K----NNKNEIYRSINFL   62 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~P-lY~~~~~~~~~~l-~~I~i~~~~------------~----r~~~~i~n~L~~~   62 (165)
                      |.+|+++...++ +..++|+||+-.- .-+.++..+.-++ ..|-+++++            +    .+...|.+.|...
T Consensus         1 m~~kk~~~~~~~-~~~l~lsGC~a~~tai~krnL~VqTkMS~TIfLdP~s~ktVyv~vrNTS~~~~~~l~~~i~~~L~ak   79 (243)
T PRK13731          1 MKTKKLMMVALV-SSTLALSGCGAMSTAIKKRNLEVKTQMSETIWLEPASERTVFLQIKNTSDKDMSGLQGKIADAVKAK   79 (243)
T ss_pred             CCHHHHHHHHHH-HHHHHHCCHHHHHHHHHHCCCCEECEECCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             933775799999-9999971568767787735752222000438866854557999985178772456789999999858


Q ss_pred             C---CCCCCCCCEEEEEEEC
Q ss_conf             1---4777767168999710
Q gi|254780803|r   63 T---STVRTKNLYQLEVNID   79 (165)
Q Consensus        63 ~---~~~~~~~~y~l~i~~~   79 (165)
                      -   ..++.+..|.|..++-
T Consensus        80 GY~iv~~P~~A~Y~LQaNVL   99 (243)
T PRK13731         80 GYQVVTSPDKAYYWIQANVL   99 (243)
T ss_pred             CEEEECCHHHCEEEEEEEEH
T ss_conf             90986786576077274240


No 11 
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=89.67  E-value=0.24  Score=27.83  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5788999999999999836851
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      ++|++++++++++.++|+||+=
T Consensus         1 m~~~k~l~~~~~l~l~l~gCs~   22 (243)
T PRK10866          1 MTRMKYLVAAATLSLFLAGCSG   22 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCC
T ss_conf             9458999999999999987689


No 12 
>PRK00178 tolB translocation protein TolB; Provisional
Probab=85.59  E-value=2.7  Score=21.40  Aligned_cols=134  Identities=7%  Similarity=0.056  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECCC--------CHHHHHHHHHHHHHCCCCCC-CCCEEEEE-
Q ss_conf             999999999999836851433415776720223257840777--------41448999999973147777-67168999-
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVS--------KNNKNEIYRSINFLTSTVRT-KNLYQLEV-   76 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~~--------~r~~~~i~n~L~~~~~~~~~-~~~y~l~i-   76 (165)
                      |+.++++.++++++++-+.+|+-+=..+.. .--.|.|.+..        ..+.+++++.|.. .|-... .+...+.. 
T Consensus         4 l~~~~~l~~~l~~~~~a~A~l~I~It~g~~-~~ipIAI~pF~~~~~~~~~~~i~~iI~~DL~~-sG~F~~l~~~~~~~~p   81 (433)
T PRK00178          4 LKRIALLVLCLLAGGAAAAELNIEITSGSD-RAIPIAVVPFGWQGGSVLPEDMAQIIGNDLRN-SGYFEPIPRQNMISLP   81 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCEEEEEEEECCCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEECCHHHCCCCC
T ss_conf             799999999998767622039999934777-60406985766668762248999999988862-8885524835524688


Q ss_pred             ----EECCCEEECCCCC----CCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ----7100000000246----76504899999999999805895877425799986067761577999999999999999
Q gi|254780803|r   77 ----NIDSFTDHAISNA----FFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQE  148 (165)
Q Consensus        77 ----~~~~~~~~~i~~~----~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~  148 (165)
                          .+....=..+..+    |......-.+.++|+|.|...++.+..+.+.+.                .+--.+++-.
T Consensus        82 ~~~~~i~f~~W~~lgad~Lv~G~i~~~gg~~~v~~~L~DV~~~~~l~g~~~~~~----------------~~~~R~~aH~  145 (433)
T PRK00178         82 SQASEVIFRDWKALGAQYVMVGNIVPAGGRLQVQYALFNVATEQQVLTGSVSGS----------------TDQLRDMAHY  145 (433)
T ss_pred             CCCCCCCHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEECCCCEEEECCEEEEC----------------HHHHHHHHHH
T ss_conf             854575756877509878999879945997999999997145207603269957----------------8998999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780803|r  149 LSENIYIDII  158 (165)
Q Consensus       149 lae~I~~~i~  158 (165)
                      +|+.|...|.
T Consensus       146 iaD~Iy~~lT  155 (433)
T PRK00178        146 IADQSFEKLT  155 (433)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999830


No 13 
>PRK01622 OxaA-like protein precursor; Validated
Probab=84.66  E-value=1.1  Score=23.78  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE-EE
Q ss_conf             9157889999999999998368514-33
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVY-PF   27 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~-Pl   27 (165)
                      |+.+|.+-+...+...++|+||+.. |.
T Consensus         2 ~k~~~~~l~~~~~~~~~~lsgc~~~~~~   29 (266)
T PRK01622          2 LKSYRAVLISLSLLLVFVLSGCSNAAPI   29 (266)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5388999999999999999546899998


No 14 
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.71  E-value=0.79  Score=24.71  Aligned_cols=20  Identities=25%  Similarity=0.683  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCE
Q ss_conf             89999999999998368514
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf~   25 (165)
                      +++++++++++++|+|||..
T Consensus         1 ~~~~~~~~~~~~~l~sCs~~   20 (235)
T TIGR03302         1 LLLLILLLALLLLLAGCSSK   20 (235)
T ss_pred             CHHHHHHHHHHHHHHHCCCC
T ss_conf             97999999999999873899


No 15 
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=81.88  E-value=1.1  Score=23.83  Aligned_cols=29  Identities=17%  Similarity=0.583  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCE-EEEECC
Q ss_conf             57889999999999998368514-334157
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVY-PFYYLK   31 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~-PlY~~~   31 (165)
                      +|+.++-+..+..++.|+|||-+ |+|-.-
T Consensus         1 mk~~~~s~~ala~l~sLA~CG~KGPLy~Pp   30 (58)
T COG5567           1 MKNVFKSLLALATLFSLAGCGLKGPLYFPP   30 (58)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             904899999999999998526678762782


No 16 
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response .; GO: 0009847 spore germination, 0016020 membrane.
Probab=79.82  E-value=1.1  Score=23.74  Aligned_cols=17  Identities=35%  Similarity=0.727  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             89999999999998368
Q gi|254780803|r    6 ILRILVVFNFFLLINSC   22 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~C   22 (165)
                      +.+++++++.+++|+||
T Consensus         2 ~~~~~~~~~~~~lL~GC   18 (400)
T TIGR02887         2 KLKILLLILALLLLTGC   18 (400)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             46678999999983266


No 17 
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.48  E-value=4.7  Score=19.96  Aligned_cols=140  Identities=9%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECC------CCHHHHHHHHHHHHHCCCCCC-CCCEE
Q ss_conf             91578899999999999983685143341577672022325784077------741448999999973147777-67168
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVV------SKNNKNEIYRSINFLTSTVRT-KNLYQ   73 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~------~~r~~~~i~n~L~~~~~~~~~-~~~y~   73 (165)
                      |++.|-+..+++++|.++++++...+|.-.=..+.. .--.|.|.+-      ...+.++|++.|... |-... .+...
T Consensus         1 m~m~~~~~~~~~~l~~~~~~~~a~a~L~I~It~G~~-~~~pIAi~pF~~~~~~~~~i~~vI~~DL~~S-G~F~~i~~~~~   78 (430)
T PRK01742          1 MKLLKRLVSVFAVLFAVISNAFAGDEVRIVIDEGVD-GARPIAVVPFKWNGSAPEDIAKIIAADLRNS-GKFNPIAVSQM   78 (430)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHC
T ss_conf             916999999999999998778505755999945767-7404599253678976678999998777608-47262596674


Q ss_pred             EEE-----EECCCEEECCCCC----CCCCEEEEEEEEEEEEEECCC-----CCEEEEEEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             999-----7100000000246----765048999999999998058-----95877425799986067761577999999
Q gi|254780803|r   74 LEV-----NIDSFTDHAISNA----FFKNIGRITLKAKYYFKEISG-----KNILYENNTDVTSLFDFSDQQFSQLRSHK  139 (165)
Q Consensus        74 l~i-----~~~~~~~~~i~~~----~~~~~~~~~~~~~y~L~~~~~-----~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~  139 (165)
                      +..     .+....=..+..+    |..+...=.+.++|+|.|.-.     ++++..+.      |...          .
T Consensus        79 ~~~p~~~~~v~~~~W~~lga~~LV~G~v~~~~~~~~v~f~L~Dv~~~~~~~g~~l~~~~------~~~~----------~  142 (430)
T PRK01742         79 PQRPTSASEVNPEAWSNLGIDAVVVGQVTPSGNGYSIAYQLVDTVGASGTAGTVLMQNS------YTVT----------N  142 (430)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCCEEEEEEE------EECC----------H
T ss_conf             45898503349778874399999999899759917999999995101246652886416------6158----------8


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254780803|r  140 SSEEKAIQELSENIYIDII  158 (165)
Q Consensus       140 ~a~erl~~~lae~I~~~i~  158 (165)
                      +-..+++-.+|+.|+.+|.
T Consensus       143 ~~~R~~aH~iaD~Iye~lT  161 (430)
T PRK01742        143 KWLRYGAHTVSDEVFEKLT  161 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9989888999999999862


No 18 
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.39  E-value=4.8  Score=19.94  Aligned_cols=45  Identities=11%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998058958774257999860677615779999999999999999999999999
Q gi|254780803|r   98 TLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDII  158 (165)
Q Consensus        98 ~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I~~~i~  158 (165)
                      .+.++|+|.|...++.+....+...                .+--.+++-.+|++|+.+|.
T Consensus       112 ~~~v~~~L~Dv~~~~~l~g~~~~~~----------------~~~~R~~aH~iaD~Iy~~lT  156 (430)
T PRK02889        112 QYEVRFRLYDTVKQQSLGGLSLTVT----------------EDQLRATAHKIADYIYEKLT  156 (430)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEEC----------------HHHHHHHHHHHHHHHHHHHH
T ss_conf             4899999997466618743389958----------------89989999999999999861


No 19 
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=78.43  E-value=1.9  Score=22.44  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             91578899999999999983685143341577
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFYYLKN   32 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY~~~~   32 (165)
                      ++|.|.++.+.++...++|+||+.. +...++
T Consensus         4 ~~~~~~~~~l~l~~~~~lLsGC~~~-~LdPkG   34 (305)
T PRK10525          4 RKYNKSLGWLSLFAGTVLLSGCNSA-LLDPKG   34 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCC
T ss_conf             6777789999999999986678763-289998


No 20 
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=75.97  E-value=1.4  Score=23.12  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999836851
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf   24 (165)
                      |+|+++++.+++++.+||=
T Consensus         1 Mkk~~~~~~~~~~~~SCg~   19 (449)
T TIGR03525         1 MKKYLVFAALVVLVYSCGS   19 (449)
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             9124899999998721058


No 21 
>PRK11372 lysozyme inhibitor; Provisional
Probab=75.78  E-value=2.1  Score=22.14  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHCCCC-EEE
Q ss_conf             8999999999999836851-433
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSV-YPF   27 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf-~Pl   27 (165)
                      .||.+++.+..++|+||++ +|+
T Consensus         2 ~MKkll~~~~~llLsGCs~~~~~   24 (109)
T PRK11372          2 SMKKLLIICLPVLLTGCSAYNQF   24 (109)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             54889999999997045432212


No 22 
>PRK02463 OxaA-like protein precursor; Provisional
Probab=74.13  E-value=3.2  Score=21.00  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             5788999999999999836851433
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +||+.-..+++.++++|+||+-.|.
T Consensus         5 ~k~~~~~~~~~~~~l~LsgC~~~~~   29 (307)
T PRK02463          5 LKRILFSGLALSMLLTLTGCVGRDK   29 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999999999963468999


No 23 
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=73.42  E-value=4.9  Score=19.86  Aligned_cols=31  Identities=6%  Similarity=0.242  Sum_probs=19.7

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEEEECCC
Q ss_conf             99999999998058958774257999860677
Q gi|254780803|r   97 ITLKAKYYFKEISGKNILYENNTDVTSLFDFS  128 (165)
Q Consensus        97 ~~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~  128 (165)
                      =.++++|+..+.+ |+++++..-.+-.+|.+.
T Consensus        90 d~V~~~Y~~~~ld-G~~~~ss~~~gp~~f~v~  120 (177)
T TIGR03516        90 DLVTFEYDIRALD-GDVIYSEEELGPQTYKVD  120 (177)
T ss_pred             CEEEEEEEEEECC-CCEEEEECCCCCEEEEEC
T ss_conf             9899999999768-988874034686569855


No 24 
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=71.55  E-value=4.1  Score=20.31  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             91578899999999999983685
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      |.-++++-..++++..+.|++||
T Consensus         1 Mkkkk~~~~~~~~~~~l~LaaC~   23 (283)
T PRK02998          1 MKKKKLFIGTIISCVVLALSACG   23 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             93589999999999999998668


No 25 
>PRK13684 Ycf48-like protein; Provisional
Probab=71.20  E-value=6.9  Score=18.94  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCC--EEEEECC-----CCCCCEEEEEEEEECC
Q ss_conf             915788999999999999836851--4334157-----7672022325784077
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSV--YPFYYLK-----NQDRTEYIHPIKVLVV   47 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf--~PlY~~~-----~~~~~~~l~~I~i~~~   47 (165)
                      ++++...++++++++.++|++|.-  -|+-...     .......+..|.+..+
T Consensus         3 ~~~~~~~~l~l~~~~~~~~~~c~~~~~p~~~~~pw~~i~l~t~~~~~dI~F~d~   56 (333)
T PRK13684          3 RLLKSLLNLLLLLALGLVLSGCSTTRVPMASSSPWQVIDLPTEANPLDIAFTDP   56 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC
T ss_conf             688889999999999986322356677655789876770577782543798469


No 26 
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=71.09  E-value=2.5  Score=21.63  Aligned_cols=21  Identities=19%  Similarity=0.528  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             889999999999998368514
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      +++++.+++.++++|+||.-.
T Consensus         2 ~~~~~~~~~~~~~~LsgCa~~   22 (231)
T PRK00249          2 AMMLIALALLLLLLLSGCASI   22 (231)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
T ss_conf             338999999999998753489


No 27 
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=70.75  E-value=3.1  Score=21.06  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             88999999999999836851
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf   24 (165)
                      |+.|++++++.+++|+||.-
T Consensus         1 mm~~~l~~~~~~~~L~GC~~   20 (238)
T PRK12696          1 MIRKLLAASCAVLLLSGCNA   20 (238)
T ss_pred             CHHHHHHHHHHHHHHHCCCC
T ss_conf             95899999999999516568


No 28 
>PRK11023 hypothetical protein; Provisional
Probab=68.55  E-value=3.8  Score=20.56  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             8899999999999983685
Q gi|254780803|r    5 RILRILVVFNFFLLINSCS   23 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CG   23 (165)
                      |.++.+++++..++|+||-
T Consensus         2 k~~~~l~~l~~~~~L~GC~   20 (191)
T PRK11023          2 KALSPLAVLISALLLQGCV   20 (191)
T ss_pred             CHHHHHHHHHHHHHHCCCH
T ss_conf             4488999999999972682


No 29 
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=68.34  E-value=5.2  Score=19.73  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             9157889999999999998368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |-++-++|+++++++.++|.+|+=+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~sC~~~   25 (559)
T TIGR03524         1 VNMKNVFKITFIVFVSLLFVSCKKK   25 (559)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9467889999999999997642588


No 30 
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=68.03  E-value=2.7  Score=21.48  Aligned_cols=18  Identities=28%  Similarity=0.534  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999836851
Q gi|254780803|r    7 LRILVVFNFFLLINSCSV   24 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf   24 (165)
                      ||+++.+..+++|+||.-
T Consensus         1 mr~l~~~~a~l~LsGCa~   18 (231)
T PRK12788          1 MRLLVAILACLALAGCAN   18 (231)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             908999999999764038


No 31 
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=67.34  E-value=3.9  Score=20.47  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             7889999999999998368514
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      ||++..++++.+.++++|||=+
T Consensus         1 Kk~~~~~~~~~~~~~l~~C~~~   22 (289)
T TIGR03659         1 KKILSLILLALLSLGLTGCSSS   22 (289)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             9129999999999998432899


No 32 
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=66.89  E-value=5.4  Score=19.61  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             91578899999999999983685
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      |.+.|.++.++..+..++|+||.
T Consensus         1 ~~~~~~~~~~l~~~As~LL~aC~   23 (206)
T COG3017           1 MPMMKRLLFLLLALASLLLTACT   23 (206)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             95277787899999999997565


No 33 
>PRK10533 putative lipoprotein; Provisional
Probab=66.71  E-value=4.5  Score=20.10  Aligned_cols=25  Identities=24%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf             9999999999983685-143341577
Q gi|254780803|r    8 RILVVFNFFLLINSCS-VYPFYYLKN   32 (165)
Q Consensus         8 k~l~~~~~~~~ls~CG-f~PlY~~~~   32 (165)
                      ++.+++..-++|++|+ .+|.|...+
T Consensus         5 ~~~ll~PlallLSACttV~Pa~kd~g   30 (171)
T PRK10533          5 KLALLLPCALLLSACTTVTPAYKDNG   30 (171)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHCC
T ss_conf             03899999999987224761143037


No 34 
>pfam01514 YscJ_FliF Secretory protein of YscJ/FliF family. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins.
Probab=66.51  E-value=6.8  Score=19.00  Aligned_cols=26  Identities=19%  Similarity=0.466  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf             9999999999998368-5143341577
Q gi|254780803|r    7 LRILVVFNFFLLINSC-SVYPFYYLKN   32 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~C-Gf~PlY~~~~   32 (165)
                      +-++.++++++++.+| .|.|+|+.-+
T Consensus         9 ~~~i~~l~~l~~~~~~p~y~~Ly~~L~   35 (206)
T pfam01514         9 LAVVALLLLLLLLAGCPDYVTLYTGLS   35 (206)
T ss_pred             HHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             999999999999847998561115999


No 35 
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=66.36  E-value=5.5  Score=19.57  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5788999999999999836851
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      +++++..+..++..+.|+|||=
T Consensus         5 MKK~~l~~~~~~~~l~LaaCss   26 (298)
T PRK04405          5 MKKWALAAASAGLLLSLAGCSS   26 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8999999999999999987179


No 36 
>PRK12450 foldase protein PrsA; Reviewed
Probab=65.89  E-value=5.6  Score=19.49  Aligned_cols=22  Identities=9%  Similarity=0.380  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5788999999999999836851
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      +++++--+..++-.++|+|||=
T Consensus         4 mKK~~~~~~~~~svl~LaAC~s   25 (309)
T PRK12450          4 MNKLITGVVTLATVVTLSACQS   25 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999986058


No 37 
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=64.51  E-value=4.9  Score=19.84  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECC
Q ss_conf             999999998368514334157
Q gi|254780803|r   11 VVFNFFLLINSCSVYPFYYLK   31 (165)
Q Consensus        11 ~~~~~~~~ls~CGf~PlY~~~   31 (165)
                      +.++..++|+||...|-|...
T Consensus         7 l~l~~~l~L~gC~~~P~y~~P   27 (460)
T PRK09837          7 LPFCVALALTGCSLAPDYQRP   27 (460)
T ss_pred             HHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999998247789999996


No 38 
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=64.21  E-value=5.6  Score=19.50  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             915788999999999999836851
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      |..+.++-...+++. ++|+|||-
T Consensus         1 mkkK~i~~~~~~~sv-l~LaaC~~   23 (285)
T PRK03002          1 MRGKHIFIITALISI-LMLSACGQ   23 (285)
T ss_pred             CCHHHHHHHHHHHHH-HHHHHHCC
T ss_conf             960189999999999-99998457


No 39 
>PRK02944 OxaA-like protein precursor; Validated
Probab=63.36  E-value=7.2  Score=18.86  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5788999999999999836851
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      .||..-...++...++|+||+.
T Consensus         2 kk~~~~~~~~~~~~~~lsgC~~   23 (255)
T PRK02944          2 KKKLGLLAMVVALMAILAGCSE   23 (255)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC
T ss_conf             2899999999999999962468


No 40 
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=62.56  E-value=4.6  Score=20.04  Aligned_cols=28  Identities=4%  Similarity=0.098  Sum_probs=15.0

Q ss_pred             EEEEEEEEEEEEEC-CCCCEEEEEEEEEE
Q ss_conf             89999999999980-58958774257999
Q gi|254780803|r   95 GRITLKAKYYFKEI-SGKNILYENNTDVT  122 (165)
Q Consensus        95 ~~~~~~~~y~L~~~-~~~~~i~~~~~~~~  122 (165)
                      ..++.++..++++. .+|+.+.+|.-...
T Consensus       133 ~~ltgtIta~V~~VlpNGNL~I~G~k~i~  161 (224)
T PRK12698        133 NSLSGSISANVMQVLPNGNLVIRGEKWIS  161 (224)
T ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             24899999999998669809999989999


No 41 
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=62.22  E-value=7.8  Score=18.63  Aligned_cols=20  Identities=15%  Similarity=0.248  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             78899999999999983685
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CG   23 (165)
                      ||..-.++++...++|+|||
T Consensus         5 ~r~~~~l~~l~~~~~L~gC~   24 (385)
T PRK09578          5 RRRRLALAALVAAFALAGCG   24 (385)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             87999999999999981679


No 42 
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=62.08  E-value=12  Score=17.52  Aligned_cols=99  Identities=11%  Similarity=0.029  Sum_probs=44.4

Q ss_pred             HHHHHHH-HHHHHHHHHCCCCE-EEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCE
Q ss_conf             8899999-99999998368514-334157767202232578407774144899999997314777767168999710000
Q gi|254780803|r    5 RILRILV-VFNFFLLINSCSVY-PFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTSTVRTKNLYQLEVNIDSFT   82 (165)
Q Consensus         5 ri~k~l~-~~~~~~~ls~CGf~-PlY~~~~~~~~~~l~~I~i~~~~~r~~~~i~n~L~~~~~~~~~~~~y~l~i~~~~~~   82 (165)
                      +++|..+ ++.+.+++.||+-. ++|-.          ...+..    .|..-.+.+.+.+...+...+|.+.+.+..+.
T Consensus         2 ~~~~~~i~~~l~~~ll~SC~~~~~vy~~----------y~~~~~----~gW~~~d~l~F~~~~~d~~~~y~l~l~lR~~~   67 (156)
T TIGR03511         2 SLVRNSISFFLGACVLVSCTENTDVYHS----------YQSTPH----GGWQKSDTLDFEIPITDYTASYRLFLLIRNDN   67 (156)
T ss_pred             CHHHHHHHHHHHHHHEEEECCCCCEEEE----------EEECCC----CCCCCCCCEEEEEECCCCCCCEEEEEEEECCC
T ss_conf             0685449999999970763899633567----------679775----78888997899976177875089999997589


Q ss_pred             ----EEC--C-CCCCCCCEEEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             ----000--0-24676504899999999999805895877425
Q gi|254780803|r   83 ----DHA--I-SNAFFKNIGRITLKAKYYFKEISGKNILYENN  118 (165)
Q Consensus        83 ----~~~--i-~~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~  118 (165)
                          .++  + ............=|++|.|-| .+|+-+-+|.
T Consensus        68 ~YpysNi~l~~~~~~~~~~~i~~DTle~~Lad-~~G~w~G~G~  109 (156)
T TIGR03511        68 RYPYRNLWALIHENLEDSTVIFTDTVDLTLAD-STGQWTGKGW  109 (156)
T ss_pred             CCCEEEEEEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEECCC
T ss_conf             75300079999997189977888616899788-9998874450


No 43 
>PRK10175 hypothetical protein; Provisional
Probab=61.89  E-value=2.9  Score=21.22  Aligned_cols=18  Identities=28%  Similarity=0.624  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999836851
Q gi|254780803|r    7 LRILVVFNFFLLINSCSV   24 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf   24 (165)
                      ++++++.++.++|+|||=
T Consensus         1 ~r~i~~~~~~lllsGC~S   18 (75)
T PRK10175          1 MRLIVVSIMVTLLSGCGS   18 (75)
T ss_pred             CEEHHHHHHHHHHCCCHH
T ss_conf             934488889999816424


No 44 
>PRK03629 tolB translocation protein TolB; Provisional
Probab=60.99  E-value=12  Score=17.40  Aligned_cols=136  Identities=13%  Similarity=0.065  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECC--------CCHHHHHHHHHHHHHCCCCCCC-CCEE
Q ss_conf             578899999999999983685143341577672022325784077--------7414489999999731477776-7168
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVV--------SKNNKNEIYRSINFLTSTVRTK-NLYQ   73 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~--------~~r~~~~i~n~L~~~~~~~~~~-~~y~   73 (165)
                      ||+++++++++.+|+  +++.+-.++-+-..+.. .--.|.|.+-        ...+.++|++.|.+- |....- +...
T Consensus         1 mk~~~~~~f~~lll~--~~~a~A~L~I~It~G~~-~~~PIAV~pF~~~g~~~~~~~i~~II~~DL~rS-G~F~~l~~~~~   76 (430)
T PRK03629          1 MKQALRVAFGFLILW--ASVLHAEVRIEITQGVD-SARPIGVVPFKWAGPGAAPEDIGGIVAADLRNS-GKFNPLDRARL   76 (430)
T ss_pred             CCHHHHHHHHHHHHH--HHHHCEEEEEEEECCCC-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCEECCHHHC
T ss_conf             901488899899987--54422379999934667-732569928644788864678999998768757-78150396785


Q ss_pred             EEE-----EECCCEEECCCCC----CCCCE-EEEEEEEEEEEEECCC--CCEEEEEEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999-----7100000000246----76504-8999999999998058--9587742579998606776157799999999
Q gi|254780803|r   74 LEV-----NIDSFTDHAISNA----FFKNI-GRITLKAKYYFKEISG--KNILYENNTDVTSLFDFSDQQFSQLRSHKSS  141 (165)
Q Consensus        74 l~i-----~~~~~~~~~i~~~----~~~~~-~~~~~~~~y~L~~~~~--~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a  141 (165)
                      +..     .+....=..+..+    |..+. ..=.+.++|+|.|...  ++++..+.+..      ..          +.
T Consensus        77 ~~~p~~~~~v~~~dWr~lgad~LV~G~v~~~~~g~~~v~f~L~DV~~~~g~~l~~~~~~~------~~----------~~  140 (430)
T PRK03629         77 PQQPGTAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV------NK----------QW  140 (430)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEEC------CH----------HH
T ss_conf             458984134585577760898899999997689619999999994166233864458845------87----------99


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780803|r  142 EEKAIQELSENIYIDII  158 (165)
Q Consensus       142 ~erl~~~lae~I~~~i~  158 (165)
                      -.+++-.+|+.|+.+|.
T Consensus       141 lR~~aH~isD~Iy~~lT  157 (430)
T PRK03629        141 LRYAGHTASDEVFEKLT  157 (430)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999851


No 45 
>pfam03304 Mlp Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=60.85  E-value=4  Score=20.37  Aligned_cols=19  Identities=37%  Similarity=0.948  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             88999999999999836851
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf   24 (165)
                      ||+-|+|++ ||++|+||.-
T Consensus         2 KIINilfcl-fll~Ln~Cns   20 (150)
T pfam03304         2 KIINILFCL-FLLMLNGCNS   20 (150)
T ss_pred             CEEHHHHHH-HHHHHCCCCC
T ss_conf             431499999-9999826567


No 46 
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=59.06  E-value=8.6  Score=18.38  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=12.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             91578899999999999983685143
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~P   26 (165)
                      |--||.+- +.+++..++|+||+=+|
T Consensus         1 m~~k~~~l-i~ll~~~~lL~gC~~~~   25 (385)
T PRK09859          1 MNRRRKLL-IPLLFCGAMLTACDDKS   25 (385)
T ss_pred             CCCHHHHH-HHHHHHHHHHHCCCCCC
T ss_conf             98206789-99999999995379997


No 47 
>PRK13616 lipoprotein LpqB; Provisional
Probab=59.04  E-value=9  Score=18.25  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             91578899999999999983685143341
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFYY   29 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY~   29 (165)
                      |++.|+.....+++..++++||+==|-=+
T Consensus         1 ~~~~~~~~~~~~~~~~~llaGCaslP~ss   29 (590)
T PRK13616          1 KLMTRLKALAALLAVALLVAGCASLPSSS   29 (590)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             98899999999999999861203689999


No 48 
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=58.85  E-value=6.3  Score=19.19  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=12.1

Q ss_pred             HHHHHHHHH-HHHHHCCC-CEEE
Q ss_conf             999999999-99983685-1433
Q gi|254780803|r    7 LRILVVFNF-FLLINSCS-VYPF   27 (165)
Q Consensus         7 ~k~l~~~~~-~~~ls~CG-f~Pl   27 (165)
                      ++.|+++++ .|+|+||+ -.++
T Consensus         4 ~~~L~~~~~~~f~LtGCsa~~g~   26 (174)
T TIGR02747         4 LKVLLLLACVAFLLTGCSASLGL   26 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78999999998720025774565


No 49 
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=58.26  E-value=7.8  Score=18.62  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=24.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             915788999999999999836851433415
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFYYL   30 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY~~   30 (165)
                      |--+++......+.+.++|+||.--|-|..
T Consensus         1 ~~~~~f~~~~a~l~~~llLaGCa~~~~~~~   30 (478)
T PRK11459          1 MNRDSFYAATASLPLFILLAGCAPMHETRQ   30 (478)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             997405888999999999837889999999


No 50 
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=58.24  E-value=9.1  Score=18.23  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHH--HHHHHCCCCEEEEECC
Q ss_conf             915788999999999--9998368514334157
Q gi|254780803|r    1 MLYKRILRILVVFNF--FLLINSCSVYPFYYLK   31 (165)
Q Consensus         1 ml~~ri~k~l~~~~~--~~~ls~CGf~PlY~~~   31 (165)
                      |.-+.|.+++++..+  .++|+||..-|-|...
T Consensus         1 ~~~~~~~r~~~~~~l~~~~lLagC~~~p~~~~p   33 (488)
T PRK09915          1 MINRQLSRLLLCSILGSTTLISGCALVRKDSAP   33 (488)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             911577699999999999997526689999999


No 51 
>pfam04507 DUF576 Protein of unknown function, DUF576. This family contains several uncharacterized staphylococcal proteins.
Probab=57.38  E-value=5.3  Score=19.63  Aligned_cols=21  Identities=14%  Similarity=0.488  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             889999999999998368514
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |+...+.++.+.++++|||+.
T Consensus         6 k~~L~is~liliifI~Gcg~~   26 (257)
T pfam04507         6 KLALYISVLILIIFISGCGFM   26 (257)
T ss_pred             EEHHHHHHHHHHHHHEECCCC
T ss_conf             003678899786520002235


No 52 
>PRK04792 tolB translocation protein TolB; Provisional
Probab=56.19  E-value=15  Score=16.90  Aligned_cols=144  Identities=8%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECC--------CCHHHHHHHHHHHHHCCCCCC-CCCEEEEEE-----
Q ss_conf             999999983685143341577672022325784077--------741448999999973147777-671689997-----
Q gi|254780803|r   12 VFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVV--------SKNNKNEIYRSINFLTSTVRT-KNLYQLEVN-----   77 (165)
Q Consensus        12 ~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~--------~~r~~~~i~n~L~~~~~~~~~-~~~y~l~i~-----   77 (165)
                      ++.+++++++|.+..|.-+=..+.. .--.|.|.+-        ...+.++|++.|.+ .|-... .+...+..-     
T Consensus         9 l~lll~~~s~~A~A~L~IeIt~G~~-~~~PIAV~pF~~~g~~~~~~~i~~II~~DL~r-SG~F~~l~~~~~~~~P~~~~~   86 (450)
T PRK04792          9 LFVLLLSFSQVANAALELVITDGID-SARPIAIVPFKWEGEGKLPTDISAVIASDLQR-SGKFSPVPTSKMPQTPYSESE   86 (450)
T ss_pred             HHHHHHHHHHHHEEEEEEEEECCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCCEECCHHHCCCCCCCCCC
T ss_conf             9999998657520249999954777-74254993754568743257999999988760-878552596674458885478


Q ss_pred             ECCCEEECCCCC----CCCCE-EEEEEEEEEEEEECCCCCEEEEEEEEEEE---EECCCCCH--HHHH-HHHHHHHHHHH
Q ss_conf             100000000246----76504-89999999999980589587742579998---60677615--7799-99999999999
Q gi|254780803|r   78 IDSFTDHAISNA----FFKNI-GRITLKAKYYFKEISGKNILYENNTDVTS---LFDFSDQQ--FSQL-RSHKSSEEKAI  146 (165)
Q Consensus        78 ~~~~~~~~i~~~----~~~~~-~~~~~~~~y~L~~~~~~~~i~~~~~~~~~---~Y~~~~~~--f~~~-~~e~~a~erl~  146 (165)
                      +....=..+..+    |..+. ..=.+.|+|+|.|...++. ..|...+.+   .+-.+.++  +... .....--.+++
T Consensus        87 v~f~dWr~lgad~LV~G~v~~~~~g~~~V~f~L~DV~~g~~-~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~R~~a  165 (450)
T PRK04792         87 INFDAWTKMGVDALLTGSVTQNAEGKYVVNYQLVDVVRGQL-TKGQSKALSDDGQLVLSKDHVLFNKVATVSAPRMREYA  165 (450)
T ss_pred             CCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEECCCEECCCHHHHHHHH
T ss_conf             37789764389889999999889974999999998016510-45532122444321123210000202104778999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780803|r  147 QELSENIYIDII  158 (165)
Q Consensus       147 ~~lae~I~~~i~  158 (165)
                      -.+|+.|+.+|.
T Consensus       166 H~isD~Iy~~lT  177 (450)
T PRK04792        166 HRISDLVYEQLT  177 (450)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999970


No 53 
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752    RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process  ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=55.91  E-value=15  Score=16.87  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             HHHHCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCE-EECCCCCCCCCEE
Q ss_conf             998368514334157767202232578407774144899999997314777767168999710000-0000246765048
Q gi|254780803|r   17 LLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTSTVRTKNLYQLEVNIDSFT-DHAISNAFFKNIG   95 (165)
Q Consensus        17 ~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~~~r~~~~i~n~L~~~~~~~~~~~~y~l~i~~~~~~-~~~i~~~~~~~~~   95 (165)
                      -|+.+|||+|=+          +.-|.   -+|+...++++++-..++....++   |-+..-.+- =.++...    ..
T Consensus        39 yLi~~cgY~a~~----------IaAvT---FTNKAA~EMkERVA~~L~~~~~~G---L~isTFH~LGL~Ii~~E----~~   98 (677)
T TIGR01074        39 YLIQNCGYKAKN----------IAAVT---FTNKAAREMKERVAKTLGKGQAKG---LTISTFHTLGLKIIRRE----HN   98 (677)
T ss_pred             HHHHHCCCCCCC----------EEEEE---CCHHHHHHHHHHHHHHCCCCCCCC---CEEECCHHHHHHHHHHH----HH
T ss_conf             987515878761----------68973---523777999999985226545585---44752057338999999----98


Q ss_pred             EEEEEEEEEEEECCCC
Q ss_conf             9999999999980589
Q gi|254780803|r   96 RITLKAKYYFKEISGK  111 (165)
Q Consensus        96 ~~~~~~~y~L~~~~~~  111 (165)
                      .+.+..+|+|.|..|.
T Consensus        99 ~lG~K~nFSlFD~~D~  114 (677)
T TIGR01074        99 ALGLKSNFSLFDETDQ  114 (677)
T ss_pred             HCCCCCCCCCCCHHHH
T ss_conf             6488999642067889


No 54 
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=55.08  E-value=16  Score=16.79  Aligned_cols=127  Identities=10%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECC-------CCCCCEEEEEEEEECCC----------------------CHHHHH
Q ss_conf             7889999999999998368514334157-------76720223257840777----------------------414489
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFYYLK-------NQDRTEYIHPIKVLVVS----------------------KNNKNE   54 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY~~~-------~~~~~~~l~~I~i~~~~----------------------~r~~~~   54 (165)
                      -+.+|+++++...++|+||.-.|---..       +++-.-.-..+.|...+                      -...+.
T Consensus        13 ~~t~k~L~~laa~~lLagC~a~~~tl~~tpp~~~~sqn~v~~~~~vsit~kD~R~~q~vA~v~~~~~lv~L~as~~vr~l   92 (204)
T COG3056          13 NMTKKILFPLAAIFLLAGCAAPPTTLIVTPPAPLPSQNPVLMGVTVSITGKDQRSDQAVAKVTRDNQLVKLTASRDVRFL   92 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf             88999999999999997537997503136997664437233141899970550166788762047978983478139999


Q ss_pred             HHHHHHHHCCCCC----CCCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEEEEEEC-CCCCEEEE--EEEEEEEEECC
Q ss_conf             9999997314777----76716899971000000002467650489999999999980-58958774--25799986067
Q gi|254780803|r   55 IYRSINFLTSTVR----TKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEI-SGKNILYE--NNTDVTSLFDF  127 (165)
Q Consensus        55 i~n~L~~~~~~~~----~~~~y~l~i~~~~~~~~~i~~~~~~~~~~~~~~~~y~L~~~-~~~~~i~~--~~~~~~~~Y~~  127 (165)
                      +.+-|...+++.+    ....-.+.+.+++-.   .+..-..-||++...+..++... ..|+.+++  ++.+.+..++.
T Consensus        93 lq~vl~~q~~srGfrig~n~~~n~~i~V~qly---a~V~qgnlryni~tkv~i~I~A~~~~Gk~~Kny~at~~~~GafsA  169 (204)
T COG3056          93 LQEVLEKQMTSRGFRVGPNGEVNLQITVDQLY---ADVEQGNLRYNIDTKVDITITATAANGKMVKNYRATYNVEGAFSA  169 (204)
T ss_pred             HHHHHHHHHHHCCEEECCCCCCEEEEEHHHHH---HHHHHCCEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEEEEEEC
T ss_conf             99999998653436753689831899849966---355633123302545889999973787155324556666655405


Q ss_pred             CCCHHH
Q ss_conf             761577
Q gi|254780803|r  128 SDQQFS  133 (165)
Q Consensus       128 ~~~~f~  133 (165)
                      +.++.+
T Consensus       170 sN~eI~  175 (204)
T COG3056         170 SNDEIA  175 (204)
T ss_pred             CCHHHH
T ss_conf             886799


No 55 
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PMID:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=55.04  E-value=3.7  Score=20.58  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999999999998368514334
Q gi|254780803|r    8 RILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      +..+++...++|+|||-.|-+
T Consensus         2 r~~~~l~~~lllagC~s~~~~   22 (146)
T TIGR03352         2 RFAVLLAACLLLAGCSSAPPP   22 (146)
T ss_pred             CEEHHHHHHHHHHHCCCCCCC
T ss_conf             075589999998532599998


No 56 
>PRK04043 tolB translocation protein TolB; Provisional
Probab=54.94  E-value=16  Score=16.77  Aligned_cols=46  Identities=9%  Similarity=0.067  Sum_probs=31.1

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998058958774257999860677615779999999999999999999999999
Q gi|254780803|r   98 TLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDII  158 (165)
Q Consensus        98 ~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I~~~i~  158 (165)
                      .+.++|+|.|...++.+..+.+....               .+...+++-.+|++|..+|.
T Consensus       102 ~~~v~~~L~Dv~~~~~l~~~~~~~~~---------------~~~~r~iAH~iaD~Iye~lt  147 (419)
T PRK04043        102 KLSLRIKLYDANTGSLKFEKDYTINS---------------LDRYPFLAHKSAIDINNYLK  147 (419)
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEECC---------------HHHHHHHHHHHHHHHHHHHC
T ss_conf             69999999986477196540797065---------------45557789999999999855


No 57 
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333   Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=54.14  E-value=7  Score=18.90  Aligned_cols=22  Identities=18%  Similarity=0.224  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999999983685143341577
Q gi|254780803|r   11 VVFNFFLLINSCSVYPFYYLKN   32 (165)
Q Consensus        11 ~~~~~~~~ls~CGf~PlY~~~~   32 (165)
                      .++..++||+||.=+++-..++
T Consensus         2 ~~~~~~~lLsGCNn~~LL~PkG   23 (228)
T TIGR01433         2 SLILASLLLSGCNNLVLLDPKG   23 (228)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCC
T ss_conf             5778999861256765538888


No 58 
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=53.82  E-value=11  Score=17.72  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             9157889999999999998368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |-+++..-+.+++..+++.+|||-+
T Consensus         1 ~~~~~~~~i~~lll~lllva~C~~s   25 (310)
T COG4594           1 MHMKKTAIILTLLLLLLLVAACSSS   25 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9750359999999999999771476


No 59 
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=53.16  E-value=8.7  Score=18.33  Aligned_cols=20  Identities=25%  Similarity=0.321  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEE
Q ss_conf             99999999999836851433
Q gi|254780803|r    8 RILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +++.+++.+|+|+||..-+=
T Consensus         4 ~i~~il~~~llL~GCs~mn~   23 (304)
T pfam07901         4 LIKLILIATLLLSGCSTTNN   23 (304)
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999999713344555


No 60 
>PRK11443 hypothetical protein; Provisional
Probab=52.93  E-value=8  Score=18.55  Aligned_cols=21  Identities=19%  Similarity=0.613  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHCCCCEEE
Q ss_conf             999999999999836851433
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      ||.+.+..+.++|+||--.|-
T Consensus         1 Mk~~~~~~~~lll~GCq~~p~   21 (120)
T PRK11443          1 MKKFIAPLLALLVSGCQIDPY   21 (120)
T ss_pred             CHHHHHHHHHHHHHCCCCCCC
T ss_conf             915899999999966678962


No 61 
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=52.84  E-value=13  Score=17.37  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             889999999999998368514
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      +++-.++.+.-.++|+|||=.
T Consensus         4 Kl~~~~~~~~svl~LaaCs~~   24 (310)
T PRK01326          4 KLIAGAVTLLSVATLAACSKT   24 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             899999999999999871699


No 62 
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=52.24  E-value=12  Score=17.53  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             788999999999999836851433415
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFYYL   30 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY~~   30 (165)
                      +++.+.++++.+.++|+||- +-+|..
T Consensus         2 k~~~~~l~~l~l~l~L~gCk-~~Ly~g   27 (246)
T COG4669           2 KSLRKYLFLLLLILLLTGCK-VDLYTG   27 (246)
T ss_pred             CHHHHHHHHHHHHHHHHCCH-HHHHCC
T ss_conf             02899999999999983356-988707


No 63 
>KOG0604 consensus
Probab=51.61  E-value=9.2  Score=18.18  Aligned_cols=16  Identities=25%  Similarity=0.445  Sum_probs=12.8

Q ss_pred             CCCCEEEEECCCCCCC
Q ss_conf             6851433415776720
Q gi|254780803|r   21 SCSVYPFYYLKNQDRT   36 (165)
Q Consensus        21 ~CGf~PlY~~~~~~~~   36 (165)
                      =|||-|.|+..+...+
T Consensus       257 LCGyPPFYS~hg~ais  272 (400)
T KOG0604         257 LCGYPPFYSNHGLAIS  272 (400)
T ss_pred             HCCCCCCCCCCCCCCC
T ss_conf             5179850136786578


No 64 
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=51.44  E-value=12  Score=17.58  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7889999999999998368514334
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      +...+.++.+.+..+|+||+-.|=|
T Consensus         2 k~~~~lv~~al~v~~LaaCSs~~~~   26 (342)
T COG3317           2 KSSAKLVLGALLVLLLAACSSDSEY   26 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             1178899999999987414688500


No 65 
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein,  YhcN/YlaJ family; InterPro: IPR014247   This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. .
Probab=51.38  E-value=10  Score=17.90  Aligned_cols=17  Identities=18%  Similarity=0.614  Sum_probs=10.2

Q ss_pred             HHHHHHHHHH--HCCCCEE
Q ss_conf             9999999998--3685143
Q gi|254780803|r   10 LVVFNFFLLI--NSCSVYP   26 (165)
Q Consensus        10 l~~~~~~~~l--s~CGf~P   26 (165)
                      ++++.++|+|  +||+..-
T Consensus         3 ~~~ll~~~~l~~tgC~~~~   21 (185)
T TIGR02898         3 FIILLLLLLLLATGCTNAQ   21 (185)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             8899999999873134100


No 66 
>PRK11548 hypothetical protein; Provisional
Probab=51.34  E-value=11  Score=17.61  Aligned_cols=16  Identities=25%  Similarity=0.563  Sum_probs=9.4

Q ss_pred             HHHHHHHCCCCE-E-EEE
Q ss_conf             999998368514-3-341
Q gi|254780803|r   14 NFFLLINSCSVY-P-FYY   29 (165)
Q Consensus        14 ~~~~~ls~CGf~-P-lY~   29 (165)
                      .++++++||++- | +|.
T Consensus        12 l~~lllsgCS~~~~~vYk   29 (113)
T PRK11548         12 VLLMLTAGCSTLERVVYR   29 (113)
T ss_pred             HHHHHHCCCCCCCCCCCC
T ss_conf             999998011578775657


No 67 
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=51.19  E-value=11  Score=17.70  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             788999999999999836851
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      .|++.+++.+.+.++|.||+=
T Consensus         1 ~~~~~~~~~~~~~~~~~~c~~   21 (177)
T PRK10477          1 MRLLPVVAAVTAAFLVVACSS   21 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHCCC
T ss_conf             940789999999999976469


No 68 
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=51.01  E-value=5.6  Score=19.52  Aligned_cols=17  Identities=29%  Similarity=0.667  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999999836851
Q gi|254780803|r    8 RILVVFNFFLLINSCSV   24 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf   24 (165)
                      ++++.+...++++|||=
T Consensus         3 ~i~l~l~v~lllSGC~S   19 (80)
T COG5645           3 NILLSLMVLLLLSGCGS   19 (80)
T ss_pred             EEHHHHHHHHHHCCCCE
T ss_conf             53278999998376410


No 69 
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=50.96  E-value=9.5  Score=18.11  Aligned_cols=18  Identities=11%  Similarity=0.285  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHCCCCEE
Q ss_conf             999999999983685143
Q gi|254780803|r    9 ILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         9 ~l~~~~~~~~ls~CGf~P   26 (165)
                      +.+.++.++||.+||++.
T Consensus         6 ~~~~~~~~~LL~aCg~sd   23 (147)
T COG4939           6 LVGMIVALSLLTACGKSD   23 (147)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             659999999998706664


No 70 
>pfam03886 DUF330 Protein of unknown function (DUF330). The proteins in this family are uncharacterized. The proteins are 170-190 amino residues in length.
Probab=50.84  E-value=18  Score=16.37  Aligned_cols=92  Identities=14%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHHCCCC---------CCCCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             414489999999731477---------77671689997100000000246765048999999999998058958774257
Q gi|254780803|r   49 KNNKNEIYRSINFLTSTV---------RTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNT  119 (165)
Q Consensus        49 ~r~~~~i~n~L~~~~~~~---------~~~~~y~l~i~~~~~~~~~i~~~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~  119 (165)
                      ..+.+.+...|...++..         ...+.|.|.+.+.....   ..+|     +..+++.|+|.+..++.++....|
T Consensus        59 ~~i~~~L~~~L~~~l~~~~V~~~~~~~~~~~~~~L~v~i~~F~~---~~~g-----~~~l~~~w~l~~~~~~~~~~~~~f  130 (160)
T pfam03886        59 DQIRRALARDLSQRLPSARVAAPPWPLGGTPDYRLQVDVQRFEG---DPGG-----TAVLSAQWRLLDAGGQRVLASRSF  130 (160)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEEEEE---ECCC-----EEEEEEEEEEECCCCCEEEEEEEE
T ss_conf             99999999999965898629836888788866799999999974---0797-----499999999982899646777779


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998606776157799999999999999999999
Q gi|254780803|r  120 DVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENI  153 (165)
Q Consensus       120 ~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I  153 (165)
                      .....-. .++.-+...+..    ++...+|++|
T Consensus       131 ~~~~p~~-~~~~~~lvaAl~----~al~~la~~I  159 (160)
T pfam03886       131 RISEPLA-GDGYAALVAALS----QALAQLADQI  159 (160)
T ss_pred             EEEEECC-CCCHHHHHHHHH----HHHHHHHHHH
T ss_conf             9998668-899799999999----9999999975


No 71 
>PRK10838 spr putative outer membrane lipoprotein; Provisional
Probab=50.48  E-value=13  Score=17.27  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             578899999999999983685143341
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVYPFYY   29 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~PlY~   29 (165)
                      ++.|++.+..+++..+|++|+=.|-..
T Consensus         7 ~r~~l~~~~~~~~~~~l~ac~~~~~~~   33 (188)
T PRK10838          7 LRYILRGIPAIAVAVLLSACSSNNTAK   33 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999998717999999888633898555


No 72 
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=50.18  E-value=13  Score=17.32  Aligned_cols=20  Identities=15%  Similarity=0.374  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             88999999999999836851
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf   24 (165)
                      |+.++..++..-++++||.=
T Consensus         3 k~k~~~~il~~al~l~GCs~   22 (200)
T COG3417           3 KMKIYASILLLALFLSGCSS   22 (200)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             57999999999999841136


No 73 
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.16  E-value=15  Score=16.88  Aligned_cols=22  Identities=9%  Similarity=0.454  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5788999999999999836851
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      +++...+++.++..+.|+|||=
T Consensus         4 l~kl~~~~~alil~~sl~gCgd   25 (152)
T COG4808           4 LNKLFSLVVALVLVFSLAGCGD   25 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8878899999999887540486


No 74 
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=50.09  E-value=15  Score=16.88  Aligned_cols=25  Identities=12%  Similarity=0.230  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHH-HHHHHCCCCEEE
Q ss_conf             5788999999999-999836851433
Q gi|254780803|r    3 YKRILRILVVFNF-FLLINSCSVYPF   27 (165)
Q Consensus         3 ~~ri~k~l~~~~~-~~~ls~CGf~Pl   27 (165)
                      ..+.+++-.++.. -|+|+||---|=
T Consensus         3 ~~m~~~~~~l~~~laflLsgC~tiPk   28 (191)
T COG3065           3 SQMNMKKGALIGTLAFLLSGCVTIPK   28 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             58764799999999999763035783


No 75 
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=49.71  E-value=17  Score=16.61  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=8.3

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999836851
Q gi|254780803|r   12 VFNFFLLINSCSV   24 (165)
Q Consensus        12 ~~~~~~~ls~CGf   24 (165)
                      .+...++|+|||=
T Consensus        13 ~l~~~l~l~gCg~   25 (271)
T PRK11063         13 ALIGSLALVGCGQ   25 (271)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999997500589


No 76 
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=49.35  E-value=11  Score=17.80  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             7889999999999998368514
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      .|.++.+++ +.+++|+||...
T Consensus        16 ~~~~~~~~~-~~~~~l~gC~~~   36 (246)
T PRK12699         16 GRLLGPVLI-VMLALVGGCSLP   36 (246)
T ss_pred             CCHHHHHHH-HHHHHHCCCCCC
T ss_conf             324888999-999986044689


No 77 
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=48.80  E-value=12  Score=17.48  Aligned_cols=19  Identities=21%  Similarity=0.565  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHCCCCE
Q ss_conf             9999999999998368514
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~   25 (165)
                      .|+++++.+.++|+||.=.
T Consensus         2 kk~~~l~~~~l~LagCas~   20 (26)
T pfam08139         2 KKLLLLLLALLLLAGCASX   20 (26)
T ss_pred             HHHHHHHHHHHHHHCCCCC
T ss_conf             6699999999998233200


No 78 
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=48.22  E-value=12  Score=17.59  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             8999999999999836851433415
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSVYPFYYL   30 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf~PlY~~   30 (165)
                      |.|++.+..|.++|+||--+-.||+
T Consensus         1 MrK~~~~all~laL~gCAtt~~YGN   25 (156)
T PRK13883          1 MRKILSLALLALALGGCATTSQYGN   25 (156)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9268999999999703313578877


No 79 
>pfam06474 MLTD_N MLTD_N.
Probab=47.62  E-value=8.9  Score=18.27  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHCCCCEE
Q ss_conf             9999999999983685143
Q gi|254780803|r    8 RILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~P   26 (165)
                      |...++.+.+||+||--.|
T Consensus         2 k~kail~~alLLaGCQst~   20 (93)
T pfam06474         2 RAKAVLAAALLLVGCQSTQ   20 (93)
T ss_pred             CHHHHHHHHHHHHHHCCCC
T ss_conf             1899999999999813799


No 80 
>TIGR02722 lp_ uncharacterized lipoprotein; InterPro: IPR014094   Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby..
Probab=47.44  E-value=18  Score=16.44  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCE-EEEECCCC
Q ss_conf             7889999999999998368514-33415776
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVY-PFYYLKNQ   33 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~-PlY~~~~~   33 (165)
                      ||.+-++++++.-++|+||.=+ |-|.....
T Consensus         1 k~~~~l~~~~~~Al~L~GC~~~~~~y~~~~~   31 (215)
T TIGR02722         1 KKYKILIFVALLALLLSGCVSQRVAYTDATD   31 (215)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8378789999999998546887266568875


No 81 
>PRK10449 heat-inducible protein; Provisional
Probab=47.38  E-value=11  Score=17.83  Aligned_cols=21  Identities=14%  Similarity=0.314  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHCCCCEEE
Q ss_conf             999999999999836851433
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +|++.++.+.++++||.-.|.
T Consensus         2 Kk~l~l~~~~llLagC~s~~~   22 (140)
T PRK10449          2 KKVVALVALSLLMAGCVSSGK   22 (140)
T ss_pred             CHHHHHHHHHHHHHHCCCCCC
T ss_conf             034999999999975238998


No 82 
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=46.87  E-value=21  Score=16.00  Aligned_cols=25  Identities=8%  Similarity=0.121  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             9157889999999999998368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |.+|++...++.+.++..+.+|+-.
T Consensus         1 m~~kk~~~~~l~~~l~~~~~~~~~~   25 (302)
T PRK10797          1 MQLRKLATALLALGLSAGLAQAEDA   25 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9458999999999999999745677


No 83 
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.63  E-value=15  Score=16.83  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHCCCCEEE
Q ss_conf             999999999999836851433
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +..+++...++.|+||+-.|-
T Consensus         5 ~~r~~~~v~lL~LagCaTaP~   25 (197)
T COG4764           5 MMRLVFAVVLLALAGCATAPS   25 (197)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             698999999999703036876


No 84 
>TIGR00752 slp outer membrane lipoprotein, Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane.
Probab=42.81  E-value=12  Score=17.50  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89999999999998368514334
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      +.|-+++.+|.|+|+||---|==
T Consensus         2 ~~~g~l~~~l~f~L~gC~~~P~~   24 (190)
T TIGR00752         2 VKKGLLITALAFLLTGCIAVPKA   24 (190)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             20145688899887531467423


No 85 
>PRK10760 murein hydrolase B; Provisional
Probab=42.06  E-value=13  Score=17.19  Aligned_cols=17  Identities=6%  Similarity=0.211  Sum_probs=6.9

Q ss_pred             EEEEEEEEECCCCCHHHH
Q ss_conf             257999860677615779
Q gi|254780803|r  117 NNTDVTSLFDFSDQQFSQ  134 (165)
Q Consensus       117 ~~~~~~~~Y~~~~~~f~~  134 (165)
                      ..|.+..-||. +..|+.
T Consensus       326 ~NF~vI~rYN~-S~~YAl  342 (357)
T PRK10760        326 PNFYTITRYNH-STHYAM  342 (357)
T ss_pred             CCHHHHHHHCC-CHHHHH
T ss_conf             67698877408-698999


No 86 
>PRK06760 hypothetical protein; Provisional
Probab=41.95  E-value=7.1  Score=18.87  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHCCCCE
Q ss_conf             5788999999999-9998368514
Q gi|254780803|r    3 YKRILRILVVFNF-FLLINSCSVY   25 (165)
Q Consensus         3 ~~ri~k~l~~~~~-~~~ls~CGf~   25 (165)
                      |+|.+.++++..+ +.+|+||+|-
T Consensus         1 MKK~l~i~i~~iis~~~lsaCS~~   24 (223)
T PRK06760          1 MKKTLTIFMLTILLLISFSACSKK   24 (223)
T ss_pred             CCEEEEEHHHHHHHHHHHHHCCCC
T ss_conf             950676499999999984003367


No 87 
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=41.80  E-value=12  Score=17.52  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             9999999999983685
Q gi|254780803|r    8 RILVVFNFFLLINSCS   23 (165)
Q Consensus         8 k~l~~~~~~~~ls~CG   23 (165)
                      |++++..++++|+||.
T Consensus         2 r~l~l~~~~l~LsGC~   17 (220)
T PRK12407          2 RFLILTPMVLALCGCE   17 (220)
T ss_pred             CCHHHHHHHHHHHCCC
T ss_conf             1579999999973658


No 88 
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=41.50  E-value=22  Score=15.85  Aligned_cols=19  Identities=21%  Similarity=0.648  Sum_probs=10.4

Q ss_pred             HHHH-HHHHHHHHHHHHHCC
Q ss_conf             7889-999999999998368
Q gi|254780803|r    4 KRIL-RILVVFNFFLLINSC   22 (165)
Q Consensus         4 ~ri~-k~l~~~~~~~~ls~C   22 (165)
                      ||.+ .++.+....+.|++|
T Consensus         2 k~~~~~~~~l~~~~~~lagC   21 (42)
T pfam08085         2 KKLIALLLALLLLALVLAGC   21 (42)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             23699999999999998612


No 89 
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=41.46  E-value=18  Score=16.41  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             8999999999999836851433
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +.|-+++.+.+.+|.+|+=+|.
T Consensus         2 ~~~~~~~~~~~~~l~~c~~~p~   23 (362)
T PRK11162          2 WVKYLLMGIVVALLAACSSKPT   23 (362)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             5899999999999976047987


No 90 
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=41.25  E-value=17  Score=16.63  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=10.5

Q ss_pred             HHHHHHHHHCCCCEEE
Q ss_conf             9999999836851433
Q gi|254780803|r   12 VFNFFLLINSCSVYPF   27 (165)
Q Consensus        12 ~~~~~~~ls~CGf~Pl   27 (165)
                      ++...++|+||.=.|.
T Consensus         8 l~~~~llLsgCat~p~   23 (203)
T PRK00022          8 LPLAALLLAGCASLPP   23 (203)
T ss_pred             HHHHHHHHHHCCCCCC
T ss_conf             9999999866148999


No 91 
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins..
Probab=40.90  E-value=14  Score=17.07  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=14.5

Q ss_pred             CC-HHHHHHHHHHHHH-HHHHHCCCC
Q ss_conf             91-5788999999999-999836851
Q gi|254780803|r    1 ML-YKRILRILVVFNF-FLLINSCSV   24 (165)
Q Consensus         1 ml-~~ri~k~l~~~~~-~~~ls~CGf   24 (165)
                      |. .+|+...+.++++ ..++.|||-
T Consensus         1 Mky~~k~~ly~s~~il~I~~vvgC~~   26 (267)
T TIGR01742         1 MKYAKKLALYISVLILIISFVVGCGK   26 (267)
T ss_pred             CCHHHHHHHHHHHHHHHEEEEECCCC
T ss_conf             91357999999998643000125875


No 92 
>pfam06085 Rz1 Lipoprotein Rz1 precursor. This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces.
Probab=40.74  E-value=15  Score=16.90  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             889999999999998368514334
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      +..-.++...+.+.++|||-+|=-
T Consensus         3 ~lkm~l~~~m~~L~vsaC~S~p~v   26 (59)
T pfam06085         3 KLKMKLCVMMLPLVVSACSSKPPV   26 (59)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             202569999989999982699986


No 93 
>TIGR02643 T_phosphoryl thymidine phosphorylase; InterPro: IPR013465    Thymidine phosphorylase (alternate name: pyrimidine phosphorylase) 2.4.2.4 from EC is involved, in E. coli and other Proteobacteria, in (deoxy)nucleotide degradation. It is often encoded in an operon together with a deoxyribose-phosphate aldolase, a phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (2.4.2.2 from EC); the naming convention here follows standard literature practice.; GO: 0009032 thymidine phosphorylase activity.
Probab=40.72  E-value=15  Score=16.82  Aligned_cols=22  Identities=9%  Similarity=0.221  Sum_probs=17.1

Q ss_pred             HHHHHHHHCCC-CEEEEECCCCC
Q ss_conf             99999983685-14334157767
Q gi|254780803|r   13 FNFFLLINSCS-VYPFYYLKNQD   34 (165)
Q Consensus        13 ~~~~~~ls~CG-f~PlY~~~~~~   34 (165)
                      +.+-.+.++|| |-||-|..+.+
T Consensus        95 LmLgPiVAACGgyVPMISGRGLG  117 (440)
T TIGR02643        95 LMLGPIVAACGGYVPMISGRGLG  117 (440)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             88788999745852562578887


No 94 
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family; InterPro: IPR003282 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia.   The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell  and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself, type III subunits in the outer membrane translocate secreted proteins through a channel-like structure.    One of the outer membrane protein subunit families, termed "K" here for nomenclature purposes, aids in the structural assembly of the invasion complex . It is also described as a lipoprotein. Members of this family include the Salmonella PrgK and SsaJ genes, MxiJ from Shigella, YscJ from Yersinia, and from the plant enteropathogens NolT (Rhizobium) and HrcJ Erwinia). The flagellar M-ring protein FliF also shares a low level of similarity, presumably due to evolution of the type III secretion system from the flagellar biosynthetic pathway.; GO: 0009306 protein secretion.
Probab=40.60  E-value=24  Score=15.66  Aligned_cols=24  Identities=29%  Similarity=0.503  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf             9999999999983685143-34157
Q gi|254780803|r    8 RILVVFNFFLLINSCSVYP-FYYLK   31 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~P-lY~~~   31 (165)
                      ..++++.++++|+||.=+- ||+.=
T Consensus         3 ~~~~~~~l~llL~GC~~~~~Ly~gL   27 (203)
T TIGR02544         3 RKLLLLLLLLLLTGCKVDLELYSGL   27 (203)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             5889999999971787405650478


No 95 
>pfam02352 Decorin_bind Decorin binding protein. This family consists of decorin binding proteins from Borrelia. The decorin binding protein of Borrelia burgdorferi the lyme disease spirochetes adheres to the proteoglycan decorin found on collagen fibres.
Probab=40.03  E-value=23  Score=15.75  Aligned_cols=22  Identities=18%  Similarity=0.588  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHHHHHHHH-HHHCCCCE
Q ss_conf             91578899999999999-98368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFL-LINSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~-~ls~CGf~   25 (165)
                      |.|-+   +++.+.+|+ +|.+||..
T Consensus         1 ~Ky~K---nllkltLlv~LLvaCgLt   23 (166)
T pfam02352         1 IKYNK---NLLKLTLLVSLLVACGLT   23 (166)
T ss_pred             CCHHH---HHHHHHHHHHHHHHCCCC
T ss_conf             92588---899999999999981574


No 96 
>pfam06604 consensus
Probab=39.91  E-value=24  Score=15.63  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=15.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             91578899999999999983685
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      |-+.|+ +++.++.+.++|+||.
T Consensus         1 M~~sk~-~~~~~~~~v~~laGCq   22 (181)
T pfam06604         1 MNFSKA-GLVAGLAAVLVLAGCQ   22 (181)
T ss_pred             CCCCHH-HHHHHHHHHHHHHCCC
T ss_conf             962067-7899999999973445


No 97 
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.34  E-value=13  Score=17.20  Aligned_cols=18  Identities=11%  Similarity=0.410  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHCCCCE
Q ss_conf             999999999998368514
Q gi|254780803|r    8 RILVVFNFFLLINSCSVY   25 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~   25 (165)
                      |.+++++.++.++|||-.
T Consensus         2 k~~~~l~slL~lvgC~~~   19 (170)
T COG3168           2 KLILLLISLLALVGCGAG   19 (170)
T ss_pred             CCHHHHHHHHHHHHCCCC
T ss_conf             403688999999750468


No 98 
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=37.69  E-value=25  Score=15.50  Aligned_cols=12  Identities=8%  Similarity=0.384  Sum_probs=8.0

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999999836851
Q gi|254780803|r   13 FNFFLLINSCSV   24 (165)
Q Consensus        13 ~~~~~~ls~CGf   24 (165)
                      .+.+++|+|||-
T Consensus        10 ~~svl~LaaC~~   21 (287)
T PRK03095         10 ATSVIALSACGT   21 (287)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999985168


No 99 
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=37.00  E-value=20  Score=16.08  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             99999999999983685143341
Q gi|254780803|r    7 LRILVVFNFFLLINSCSVYPFYY   29 (165)
Q Consensus         7 ~k~l~~~~~~~~ls~CGf~PlY~   29 (165)
                      +|+++...+-++|+||.=+...-
T Consensus         2 Kk~~~~~~~allLtgCa~QT~~~   24 (97)
T pfam06291         2 KKMLFAAALALLITGCAQQTFTV   24 (97)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             22599999999972133049993


No 100
>pfam11153 DUF2931 Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=36.61  E-value=17  Score=16.55  Aligned_cols=16  Identities=25%  Similarity=0.752  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             9999999999983685
Q gi|254780803|r    8 RILVVFNFFLLINSCS   23 (165)
Q Consensus         8 k~l~~~~~~~~ls~CG   23 (165)
                      +.++++.++++++||.
T Consensus         2 ~~i~~ll~~lll~aCs   17 (202)
T pfam11153         2 KKILLLLLLLLLTACS   17 (202)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             0148999999987602


No 101
>pfam11254 DUF3053 Protein of unknown function (DUF3053). Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=35.71  E-value=26  Score=15.39  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             88999999999999836851
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf   24 (165)
                      |.+.-++.+...+.|+|||=
T Consensus         2 R~~~p~~al~~v~~LagCgd   21 (229)
T pfam11254         2 RWFAPLLALLVVLQLAGCGD   21 (229)
T ss_pred             CHHHHHHHHHHHHHHHHCCC
T ss_conf             33888999999999850368


No 102
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=33.84  E-value=30  Score=15.02  Aligned_cols=26  Identities=15%  Similarity=0.356  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             91578899999999999983685143
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~P   26 (165)
                      |..+++..+++++...+++++|....
T Consensus         1 ~~~~~~~~~~~~~l~~~f~~~~~~~~   26 (211)
T COG2834           1 MMLMMMKLLLALALLLLFLSACAQAG   26 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92378999999999999988887745


No 103
>PRK11653 hypothetical protein; Provisional
Probab=33.34  E-value=27  Score=15.34  Aligned_cols=23  Identities=4%  Similarity=0.202  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             88999999999999836851433
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      |+.-+.+.+...|+|+||+=++-
T Consensus        20 ~l~P~alav~avF~LagCe~~~e   42 (223)
T PRK11653         20 HLTPVALAVAAVFMLAGCEKSDE   42 (223)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             31278889889998650478866


No 104
>pfam07854 DUF1646 Protein of unknown function (DUF1646). Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaebacterium Methanosarcina mazei.
Probab=32.87  E-value=31  Score=14.93  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7889999999999998368514334
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      -|-.|+.+++..+-+| |-||+|+-
T Consensus       226 iRa~KVy~Fi~AL~lL-G~gFkPli  249 (347)
T pfam07854       226 IRAVKVFVFIFALELL-GEGFKPLI  249 (347)
T ss_pred             HHHHHHHHHHHHHHHH-HCCCHHHH
T ss_conf             9899999999999998-25556679


No 105
>PRK10270 hypothetical protein; Provisional
Probab=32.37  E-value=36  Score=14.59  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             57889999999999998368
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSC   22 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~C   22 (165)
                      +||++.+++++.+++++.++
T Consensus         1 Mkk~~~~~~~l~~~l~i~~g   20 (340)
T PRK10270          1 MKKVLLIILLLLVVLGIAAG   20 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             90289999999999999999


No 106
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=32.19  E-value=31  Score=14.97  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             788999999999999836851
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      ||.++..+ ++.-++|+|||=
T Consensus         2 Kk~~l~~~-i~SAL~LaGCg~   21 (269)
T pfam12262         2 KKKFLALL-LASALLLAGCGD   21 (269)
T ss_pred             CHHHHHHH-HHHHHHHCCCCC
T ss_conf             24799999-999864111579


No 107
>PRK11138 outer membrane protein assembly complex subunit YfgL; Provisional
Probab=32.11  E-value=34  Score=14.75  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             915788999999999999836851
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf   24 (165)
                      |-++|.  ++..++.+.+|+||+.
T Consensus         1 ~~~~~~--~~~~l~~~~ll~gCs~   22 (394)
T PRK11138          1 MQLRKL--LLPGLLSVALLSGCSL   22 (394)
T ss_pred             CCHHHH--HHHHHHHHHHHHHCCC
T ss_conf             951677--9999999999865237


No 108
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein; InterPro: IPR010103   This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown..
Probab=31.87  E-value=35  Score=14.63  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             7889999999999998368514
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |--+|++|++.+=+||-||.=+
T Consensus         3 KdKlKlIFIL~LAvLLFSC~ke   24 (463)
T TIGR01781         3 KDKLKLIFILMLAVLLFSCKKE   24 (463)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCC
T ss_conf             5404688899999986047621


No 109
>pfam11873 DUF3393 Domain of unknown function (DUF3393). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is typically between 188 to 206 amino acids in length. This domain is found associated with pfam01464.
Probab=31.86  E-value=18  Score=16.48  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHCCCCEE
Q ss_conf             9999999999983685143
Q gi|254780803|r    8 RILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~P   26 (165)
                      |.+.++++.++|.||+=+|
T Consensus         2 k~l~~~~~~llL~~Cs~~~   20 (200)
T pfam11873         2 KYLSLLLILLLLSGCSSQF   20 (200)
T ss_pred             CEEHHHHHHHHHHHCCCCC
T ss_conf             3107999999984157765


No 110
>PRK06193 hypothetical protein; Provisional
Probab=31.04  E-value=36  Score=14.60  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             889999999999998368514
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |.+++++.+...++|++||-.
T Consensus         2 ~~~~~~~~l~~~~~l~~~~~~   22 (211)
T PRK06193          2 RAAALLCALLVAALLAGCGRE   22 (211)
T ss_pred             CHHHHHHHHHHHHHHCCCCCC
T ss_conf             179999999999994252200


No 111
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=30.99  E-value=29  Score=15.19  Aligned_cols=17  Identities=24%  Similarity=0.336  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             89999999999998368
Q gi|254780803|r    6 ILRILVVFNFFLLINSC   22 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~C   22 (165)
                      +.|+++++.+.+||.+|
T Consensus         2 ~~k~~~~~~~~~~l~~c   18 (360)
T PRK11671          2 MKKYLALALIAPLLISC   18 (360)
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             14688999999999871


No 112
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=30.98  E-value=31  Score=14.94  Aligned_cols=10  Identities=20%  Similarity=0.541  Sum_probs=6.9

Q ss_pred             HHHHHHCCCC
Q ss_conf             9999836851
Q gi|254780803|r   15 FFLLINSCSV   24 (165)
Q Consensus        15 ~~~~ls~CGf   24 (165)
                      ..++|+||.=
T Consensus        12 ~~l~lsgC~s   21 (160)
T PRK09967         12 TSLILTGCQS   21 (160)
T ss_pred             HHHHHHHCCC
T ss_conf             9999984589


No 113
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase; InterPro: IPR006238   This group of sequences represent cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys..
Probab=30.68  E-value=24  Score=15.60  Aligned_cols=17  Identities=29%  Similarity=0.321  Sum_probs=11.3

Q ss_pred             HHHHHHCCCCEEEEECC
Q ss_conf             99998368514334157
Q gi|254780803|r   15 FFLLINSCSVYPFYYLK   31 (165)
Q Consensus        15 ~~~~ls~CGf~PlY~~~   31 (165)
                      ..+|=++|||+|-.+.+
T Consensus       274 A~fL~nsCGfkP~~~~v  290 (415)
T TIGR01329       274 ALFLENSCGFKPTHSRV  290 (415)
T ss_pred             HHHHHHCCCCCCCCCCC
T ss_conf             99863216888668831


No 114
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=30.59  E-value=38  Score=14.41  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             788999999999999836851433
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      +|++.+..++...++|+||---|-
T Consensus         3 ~r~~lia~~~a~~l~lsgC~t~p~   26 (219)
T PRK10510          3 KRVYLIAAIVSGALAVSGCTTNPY   26 (219)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             268999999999987413567898


No 115
>COG5510 Predicted small secreted protein [Function unknown]
Probab=29.16  E-value=40  Score=14.26  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             91578899999999999983685
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      |..+-++.+.+++..-++|++|.
T Consensus         1 mmk~t~l~i~~vll~s~llaaCN   23 (44)
T COG5510           1 MMKKTILLIALVLLASTLLAACN   23 (44)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             90489999999999999998866


No 116
>PRK10215 hypothetical protein; Provisional
Probab=29.04  E-value=32  Score=14.85  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCEEE
Q ss_conf             7889999999999998368-51433
Q gi|254780803|r    4 KRILRILVVFNFFLLINSC-SVYPF   27 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~C-Gf~Pl   27 (165)
                      +-+.|-+.++.+.++|+|| .|.-+
T Consensus         6 k~~~k~~~l~~~~f~LSgC~t~~L~   30 (219)
T PRK10215          6 KGFFKAAGLLPLAFFLSGCISFGLV   30 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3544452476689999877665542


No 117
>PRK11189 lipoprotein NlpI; Provisional
Probab=28.75  E-value=40  Score=14.27  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             78899999999999983685
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CG   23 (165)
                      ++.++..++..+.++|+||.
T Consensus         2 ~~~~r~~~~~~~~l~LsGC~   21 (297)
T PRK11189          2 KPFLRWCFVATAALLLAGCA   21 (297)
T ss_pred             CHHHHHHHHHHHHHHHHHHC
T ss_conf             51899999999999998640


No 118
>TIGR03529 GldK_short gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. This model represents a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture than that found in Flavobacterium johnsoniae and related species (represented by (TIGR03525). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=28.21  E-value=18  Score=16.39  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             889999999999998368514
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVY   25 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~   25 (165)
                      |++.+.+.+.++++|++||+-
T Consensus         1 ~~~~~~~~~~~~~~~~~c~~~   21 (344)
T TIGR03529         1 RLLSITLGLAVATLLPGCGLF   21 (344)
T ss_pred             CEEEEHHHHHHHHHHCCCCCC
T ss_conf             903300467999762024667


No 119
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266   This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=27.76  E-value=43  Score=14.11  Aligned_cols=17  Identities=29%  Similarity=0.667  Sum_probs=8.9

Q ss_pred             HHHHHHHHHH-HHHHHCC
Q ss_conf             8999999999-9998368
Q gi|254780803|r    6 ILRILVVFNF-FLLINSC   22 (165)
Q Consensus         6 i~k~l~~~~~-~~~ls~C   22 (165)
                      +..++++.+. +++|+||
T Consensus         4 ~~~l~~~~~~a~~lLsaC   21 (924)
T TIGR02917         4 ITALLTILLAAILLLSAC   21 (924)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999998630


No 120
>pfam01298 Lipoprotein_5 Transferrin binding protein-like solute binding protein. This family of proteins are distantly related to other families of solute binding proteins.
Probab=27.66  E-value=30  Score=15.05  Aligned_cols=21  Identities=29%  Similarity=0.260  Sum_probs=10.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             91578899999999999983685
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      |..+  ++-.++....+||++|+
T Consensus         1 M~~~--l~~~~lal~~~LLSAC~   21 (589)
T pfam01298         1 MNIP--LNKLALALAAGLLSACS   21 (589)
T ss_pred             CCCC--CCHHHHHHHHHHHHHHC
T ss_conf             9656--54549999999999734


No 121
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=27.03  E-value=37  Score=14.47  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             78899999999999983685143341
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFYY   29 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY~   29 (165)
                      ++++.++.++..+.++..|||.-+-.
T Consensus         2 ~~~~i~l~vi~il~ll~~~~yN~lv~   27 (185)
T COG1704           2 RRFLIILAVIVILLLLAVGGYNGLVK   27 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             23699999999999999996514999


No 122
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=26.98  E-value=32  Score=14.88  Aligned_cols=16  Identities=31%  Similarity=0.611  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             9999999999983685
Q gi|254780803|r    8 RILVVFNFFLLINSCS   23 (165)
Q Consensus         8 k~l~~~~~~~~ls~CG   23 (165)
                      |.+.+-.+-|+|+||+
T Consensus         2 R~lpi~llal~ltGCs   17 (133)
T PRK10781          2 RALPICLLALMLTGCS   17 (133)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             2089999999984313


No 123
>pfam12273 RCR Chitin synthesis regulation, resistance to Congo red. RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5.
Probab=26.80  E-value=43  Score=14.12  Aligned_cols=22  Identities=9%  Similarity=0.386  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHCC--------CCEEEEECC
Q ss_conf             9999999998368--------514334157
Q gi|254780803|r   10 LVVFNFFLLINSC--------SVYPFYYLK   31 (165)
Q Consensus        10 l~~~~~~~~ls~C--------Gf~PlY~~~   31 (165)
                      +++++++||+.+|        |-+|||+..
T Consensus         9 i~~~~i~~f~~~~~n~RRrr~G~~Pi~GT~   38 (124)
T pfam12273         9 IIALLILFFLTARINRRRRRRGLQPIYGTA   38 (124)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999999999873999875888876776


No 124
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=26.33  E-value=31  Score=14.98  Aligned_cols=17  Identities=29%  Similarity=0.587  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999999836851
Q gi|254780803|r    8 RILVVFNFFLLINSCSV   24 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf   24 (165)
                      ++++++.+.++|+||++
T Consensus         2 ~~~~~~~~~~~l~gCs~   18 (377)
T TIGR03300         2 RLALVIALAALLSGCSW   18 (377)
T ss_pred             CCHHHHHHHHHHHHCCC
T ss_conf             23899999999855657


No 125
>KOG2791 consensus
Probab=26.22  E-value=38  Score=14.42  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=16.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             91578899999999999983685143341
Q gi|254780803|r    1 MLYKRILRILVVFNFFLLINSCSVYPFYY   29 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~ls~CGf~PlY~   29 (165)
                      |.|+|+.+++-.+     +++|+|--...
T Consensus         2 mvYrRmhrlanaV-----iAcC~f~~~~v   25 (455)
T KOG2791           2 MVYRRMHRLANAV-----IACCMFNQSHV   25 (455)
T ss_pred             CHHHHHHHHHHHH-----HHHHHHCEEEE
T ss_conf             0369999999999-----99873120344


No 126
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=25.92  E-value=46  Score=13.90  Aligned_cols=19  Identities=11%  Similarity=0.141  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999836851
Q gi|254780803|r    6 ILRILVVFNFFLLINSCSV   24 (165)
Q Consensus         6 i~k~l~~~~~~~~ls~CGf   24 (165)
                      +.....++...++|+|||=
T Consensus         8 l~~~a~ll~~~~~l~~C~~   26 (272)
T PRK09861          8 LRAGAALLLAGILLAGCDQ   26 (272)
T ss_pred             HHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999874589


No 127
>COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only]
Probab=25.63  E-value=47  Score=13.87  Aligned_cols=143  Identities=10%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC--EEE--EECC-----CC-CCC----------------EEEEEEEEECCC---------
Q ss_conf             788999999999999836851--433--4157-----76-720----------------223257840777---------
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSV--YPF--YYLK-----NQ-DRT----------------EYIHPIKVLVVS---------   48 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf--~Pl--Y~~~-----~~-~~~----------------~~l~~I~i~~~~---------   48 (165)
                      .|..+..+...+.++|+|||=  +|.  |...     .. +-.                ..-.+|-+....         
T Consensus         8 ~~~~~l~~~la~~a~L~gC~~~~~p~~~~~l~~~~~~~~~~~~~~~~qllia~p~a~kal~s~rivV~~~~geiqy~~~a   87 (205)
T COG3218           8 LRRLSLAAALALAATLAGCGPEAAPNDTYSLSVHPPVDSNGPKRKTWQLLIARPTALKALDSPRIVVRPSRGEIQYYAGA   87 (205)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHCCC
T ss_conf             89999999999999972347778977446415788665777766541698537763220259866984286466785377


Q ss_pred             ---CHHHHHHHHHHHHHCC---------CCCC--CCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEE
Q ss_conf             ---4144899999997314---------7777--6716899971000000002467650489999999999980589587
Q gi|254780803|r   49 ---KNNKNEIYRSINFLTS---------TVRT--KNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNIL  114 (165)
Q Consensus        49 ---~r~~~~i~n~L~~~~~---------~~~~--~~~y~l~i~~~~~~~~~i~~~~~~~~~~~~~~~~y~L~~~~~~~~i  114 (165)
                         ++.-.+++..|...+.         +.++  +-.|.|..++........  +   ..-.-.+.+..+|.+..++.++
T Consensus        88 ~W~d~~~~l~q~~l~~aFe~sg~~~gl~~~g~gL~aDy~l~~dlr~FE~~y~--~---~~~~A~Iei~v~Ll~~~n~~v~  162 (205)
T COG3218          88 QWGDPLPNLVQDRLVQAFEDSGRFAGLGRPGSGLAADYQLILDLRAFEIQYV--T---GAPTAVIEISVRLLNDRNGTVR  162 (205)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEEHHHHHHHHCC--C---CCCEEEEEEEEEEECCCCCCEE
T ss_conf             4368506899999999986238542025898650565654331434523225--8---8863899999887316888688


Q ss_pred             EEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7425799986067761577999999999999999999999999999
Q gi|254780803|r  115 YENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDIISF  160 (165)
Q Consensus       115 ~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I~~~i~~~  160 (165)
                      .+..|+.+.--+..+.. +...|-..|-        .++..+|..|
T Consensus       163 A~r~F~a~~pv~g~~~~-a~v~A~dkA~--------~q~~~EIV~W  199 (205)
T COG3218         163 ASRVFRASQPVDGKGNA-AVVKAFDKAF--------AQLTNEIVGW  199 (205)
T ss_pred             EEEEEEEEECCCCCCCH-HHHHHHHHHH--------HHHHHHHHHH
T ss_conf             87778986014689837-8999999999--------9998887866


No 128
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.54  E-value=17  Score=16.57  Aligned_cols=12  Identities=25%  Similarity=0.445  Sum_probs=9.4

Q ss_pred             HHCCCCEEEEEC
Q ss_conf             836851433415
Q gi|254780803|r   19 INSCSVYPFYYL   30 (165)
Q Consensus        19 ls~CGf~PlY~~   30 (165)
                      -|.|||+|=|..
T Consensus        34 ASkCGfTpQYeg   45 (162)
T COG0386          34 ASKCGFTPQYEG   45 (162)
T ss_pred             CCCCCCCHHHHH
T ss_conf             544688675899


No 129
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=24.70  E-value=46  Score=13.90  Aligned_cols=16  Identities=13%  Similarity=0.121  Sum_probs=11.1

Q ss_pred             HHHHHCCCCEEEEECC
Q ss_conf             9998368514334157
Q gi|254780803|r   16 FLLINSCSVYPFYYLK   31 (165)
Q Consensus        16 ~~~ls~CGf~PlY~~~   31 (165)
                      -.++.||||+|++-.+
T Consensus       232 ~~~f~G~Gy~p~~veg  247 (793)
T COG3957         232 KALFEGYGYEPVFVEG  247 (793)
T ss_pred             HHHHHHCCCCEEEECC
T ss_conf             9998517984058558


No 130
>pfam09716 ETRAMP Malarial early transcribed membrane protein (ETRAMP). These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane. Members have an initial hydrophobic, Phe/Tyr-rich, stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=24.29  E-value=47  Score=13.88  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889999999999998368514334157
Q gi|254780803|r    5 RILRILVVFNFFLLINSCSVYPFYYLK   31 (165)
Q Consensus         5 ri~k~l~~~~~~~~ls~CGf~PlY~~~   31 (165)
                      |+-|++.++.|++.+  |=|.|=+...
T Consensus         2 KisKil~f~a~Llai--n~l~p~~~~~   26 (84)
T pfam09716         2 KVSKILYFFAFLLAI--NLLAPGLNNN   26 (84)
T ss_pred             CHHHHHHHHHHHHHH--HHCCCCCCCH
T ss_conf             178999999999999--9703431111


No 131
>KOG4544 consensus
Probab=24.06  E-value=24  Score=15.68  Aligned_cols=25  Identities=12%  Similarity=-0.071  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7889999999999998368514334
Q gi|254780803|r    4 KRILRILVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~CGf~PlY   28 (165)
                      .+..+...++.++.+...|||+-=+
T Consensus        72 ~~~Kr~~~liPIvPL~f~~gYqyd~   96 (144)
T KOG4544          72 FHHKRLLHLIPIVPLAFFIGYQYDF   96 (144)
T ss_pred             HHHHCCCHHEECHHHHHHHHHEEEC
T ss_conf             8770400100011467632111111


No 132
>TIGR01734 D-ala-DACP-lig D-alanine-activating enzyme; InterPro: IPR010072   This entry represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP to D-ala-AMP + PPi, and further catalyses the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in Gram-positive bacteria, both polysacchatides .; GO: 0016208 AMP binding, 0047473 D-alanine-poly(phosphoribitol) ligase activity, 0019350 teichoic acid biosynthetic process.
Probab=23.98  E-value=50  Score=13.68  Aligned_cols=16  Identities=13%  Similarity=0.011  Sum_probs=11.9

Q ss_pred             HHHHHHHHHCCCCEEE
Q ss_conf             9999999836851433
Q gi|254780803|r   12 VFNFFLLINSCSVYPF   27 (165)
Q Consensus        12 ~~~~~~~ls~CGf~Pl   27 (165)
                      ..++.+..+||+|-|+
T Consensus        66 ~~flg~~KsGhaYiPv   81 (513)
T TIGR01734        66 VAFLGSIKSGHAYIPV   81 (513)
T ss_pred             HHHHHHHHCCCCCCCC
T ss_conf             9999975168964343


No 133
>pfam11810 DUF3332 Domain of unknown function (DUF3332). This family of proteins are functionally uncharacterized. This family is only found in bacteria.
Probab=23.73  E-value=51  Score=13.65  Aligned_cols=19  Identities=21%  Similarity=0.427  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q ss_conf             7889999999999998368
Q gi|254780803|r    4 KRILRILVVFNFFLLINSC   22 (165)
Q Consensus         4 ~ri~k~l~~~~~~~~ls~C   22 (165)
                      +++++..++.+..+.++||
T Consensus         2 k~~~~v~a~~~~~~~~s~C   20 (175)
T pfam11810         2 KKILAVVAALAGSTSLSGC   20 (175)
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             1169999999999885220


No 134
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=23.72  E-value=32  Score=14.87  Aligned_cols=16  Identities=25%  Similarity=0.233  Sum_probs=9.9

Q ss_pred             HHHHHHHHHCCCCEEE
Q ss_conf             9999999836851433
Q gi|254780803|r   12 VFNFFLLINSCSVYPF   27 (165)
Q Consensus        12 ~~~~~~~ls~CGf~Pl   27 (165)
                      ++..+++|.||+=.|=
T Consensus         7 ~~l~~~lLvGCsS~~~   22 (123)
T COG5633           7 LSLALLLLVGCSSHQE   22 (123)
T ss_pred             HHHHHHHHHCCCCCCC
T ss_conf             9999999420478877


No 135
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=22.93  E-value=53  Score=13.55  Aligned_cols=19  Identities=21%  Similarity=0.436  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHCCCCEEEE
Q ss_conf             9999999998368514334
Q gi|254780803|r   10 LVVFNFFLLINSCSVYPFY   28 (165)
Q Consensus        10 l~~~~~~~~ls~CGf~PlY   28 (165)
                      +.++++++++++|.+.|--
T Consensus         5 ~~~~~~~~~~~~~~~~~~~   23 (308)
T PRK11669          5 VSLLSLLLLLAGVPVAPQA   23 (308)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999740036554


No 136
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=22.87  E-value=53  Score=13.55  Aligned_cols=18  Identities=22%  Similarity=0.432  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHCCCCEE
Q ss_conf             999999999983685143
Q gi|254780803|r    9 ILVVFNFFLLINSCSVYP   26 (165)
Q Consensus         9 ~l~~~~~~~~ls~CGf~P   26 (165)
                      .+.+++++++|+||+=.|
T Consensus         7 ~~~ll~~~~~l~gC~~~~   24 (351)
T PRK10461          7 RVALLAAALLLVGCDQAP   24 (351)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999998724888


No 137
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD; InterPro: IPR013361    Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known..
Probab=22.67  E-value=50  Score=13.70  Aligned_cols=21  Identities=10%  Similarity=0.255  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHCCCCEE-EEEC
Q ss_conf             99999999983685143-3415
Q gi|254780803|r   10 LVVFNFFLLINSCSVYP-FYYL   30 (165)
Q Consensus        10 l~~~~~~~~ls~CGf~P-lY~~   30 (165)
                      .++..+.++|.||+-++ --..
T Consensus         2 ~~~~a~~~~LagC~~~~P~~~~   23 (211)
T TIGR02522         2 VLLLALTALLAGCASTDPEIDV   23 (211)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCC
T ss_conf             7898899997530588875553


No 138
>PRK10759 hypothetical protein; Provisional
Probab=22.66  E-value=50  Score=13.69  Aligned_cols=14  Identities=29%  Similarity=0.778  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999983685
Q gi|254780803|r   10 LVVFNFFLLINSCS   23 (165)
Q Consensus        10 l~~~~~~~~ls~CG   23 (165)
                      +++++.+++++||.
T Consensus         3 ~~~~~~~l~~sgc~   16 (106)
T PRK10759          3 ALIVPLLLLLSGCS   16 (106)
T ss_pred             HHHHHHHHHHCCCH
T ss_conf             39999999984423


No 139
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360    Proteins in this entry are designated PilF  and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=22.51  E-value=40  Score=14.25  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=15.7

Q ss_pred             HHHHHHHHHCCCCE-EEEECCCCC
Q ss_conf             99999998368514-334157767
Q gi|254780803|r   12 VFNFFLLINSCSVY-PFYYLKNQD   34 (165)
Q Consensus        12 ~~~~~~~ls~CGf~-PlY~~~~~~   34 (165)
                      .++++++|+||+-+ |-+.+++.+
T Consensus         2 ~l~~~~~l~GC~~~~P~~q~~~~~   25 (247)
T TIGR02521         2 ALVLLLALTGCVTTPPTVQEQEVP   25 (247)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             887846785157887897787888


No 140
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=22.41  E-value=54  Score=13.49  Aligned_cols=25  Identities=32%  Similarity=0.238  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHHHHHHH-HHCCCCE
Q ss_conf             915788999999999999-8368514
Q gi|254780803|r    1 MLYKRILRILVVFNFFLL-INSCSVY   25 (165)
Q Consensus         1 ml~~ri~k~l~~~~~~~~-ls~CGf~   25 (165)
                      |+++|.+-+.++++.+.+ .+.|++.
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~   26 (390)
T PRK11397          1 MLLKRRLIIAASLFVFNLSSAFAAEN   26 (390)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             94378999999999999999874045


No 141
>PRK05137 tolB translocation protein TolB; Provisional
Probab=22.38  E-value=54  Score=13.49  Aligned_cols=45  Identities=13%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998058958774257999860677615779999999999999999999999999
Q gi|254780803|r   98 TLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDII  158 (165)
Q Consensus        98 ~~~~~y~L~~~~~~~~i~~~~~~~~~~Y~~~~~~f~~~~~e~~a~erl~~~lae~I~~~i~  158 (165)
                      .+.++|+|.|...++.+....+.+.                .+--.+++-.+|+.|+.+|.
T Consensus       117 ~~~v~f~L~DV~~~~~l~g~~~~~~----------------~~~~R~~aH~iaD~Iye~LT  161 (437)
T PRK05137        117 RLKVEFRLWDVFAGQQLLGQQFFTS----------------PENWRRAAHKIADAIYERLT  161 (437)
T ss_pred             EEEEEEEEEECCCHHEECCEEEEEC----------------HHHHHHHHHHHHHHHHHHHC
T ss_conf             4999999997464010226089966----------------89999999999999999860


No 142
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.30  E-value=54  Score=13.48  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             5788999999999999836851433
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      .+++..+++++...| |-+|| .|-
T Consensus         1 lRsi~s~~L~~~~~f-LvsC~-gp~   23 (142)
T TIGR03042         1 LRSLASLLLVLLLTF-LVSCS-GPA   23 (142)
T ss_pred             CHHHHHHHHHHHHHH-HHHCC-CCC
T ss_conf             976999999999999-98838-998


No 143
>pfam03783 CsgG Curli production assembly/transport component CsgG. CsgG is an outer membrane-located lipoprotein that is highly resistant to protease digestion. During curli assembly, an adhesive surface fibre, CsgG is required to maintain the stability of CsgA and CsgB.
Probab=21.89  E-value=55  Score=13.43  Aligned_cols=84  Identities=13%  Similarity=0.037  Sum_probs=46.8

Q ss_pred             CEEEEEEECCCEEECCCC---------CCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEE-EECCCCC----------
Q ss_conf             168999710000000024---------67650489999999999980589587742579998-6067761----------
Q gi|254780803|r   71 LYQLEVNIDSFTDHAISN---------AFFKNIGRITLKAKYYFKEISGKNILYENNTDVTS-LFDFSDQ----------  130 (165)
Q Consensus        71 ~y~l~i~~~~~~~~~i~~---------~~~~~~~~~~~~~~y~L~~~~~~~~i~~~~~~~~~-~Y~~~~~----------  130 (165)
                      .|.+.=.+.+.-.++.+.         -+........++++.+++|..+++++.+-+.+... +++....          
T Consensus        89 ~~~i~G~It~~~~n~~sgg~g~~~~Gig~~~~~~~~~V~vdLRlVdv~TgeVl~s~t~~k~i~s~~~~~~~f~~g~~~~~  168 (207)
T pfam03783        89 DYLIEGSITEFGRNVSTGGGGAQYFGILGSGKYQVAYVKVDLRAVDVRTGEVLASVTGEGEASSSNREVGLFVSGFGLLA  168 (207)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCEEECCCCCEE
T ss_conf             88999367775133223765654402235316999999999999972452799999988799997223224750354357


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -------577999999999999999999999
Q gi|254780803|r  131 -------QFSQLRSHKSSEEKAIQELSENIY  154 (165)
Q Consensus       131 -------~f~~~~~e~~a~erl~~~lae~I~  154 (165)
                             .=....|-+.+.|+++..|..+..
T Consensus       169 ~~~g~~~nep~~~Avr~aIe~aV~~li~~g~  199 (207)
T pfam03783       169 GYDGTTNNKPLGLAIREAIEKAVEELITKGW  199 (207)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7404115876999999999999999986625


No 144
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=21.83  E-value=30  Score=15.09  Aligned_cols=16  Identities=13%  Similarity=0.434  Sum_probs=9.6

Q ss_pred             HHHHHHHHHCCCCEEE
Q ss_conf             9999999836851433
Q gi|254780803|r   12 VFNFFLLINSCSVYPF   27 (165)
Q Consensus        12 ~~~~~~~ls~CGf~Pl   27 (165)
                      ++...++|++|.-.-+
T Consensus         9 i~~~~~~L~aCQaNyi   24 (46)
T pfam02402         9 ILLLTVLLSACQANYI   24 (46)
T ss_pred             HHHHHHHHHHHHHHHE
T ss_conf             9999999998555041


No 145
>pfam05715 zf-piccolo Piccolo Zn-finger. This (predicted) Zinc finger is found in the bassoon and piccolo proteins. There are eight conserved cysteines, suggesting that it coordinates two zinc ligands.
Probab=21.75  E-value=27  Score=15.38  Aligned_cols=10  Identities=30%  Similarity=0.421  Sum_probs=7.3

Q ss_pred             HHCCCCEEEE
Q ss_conf             8368514334
Q gi|254780803|r   19 INSCSVYPFY   28 (165)
Q Consensus        19 ls~CGf~PlY   28 (165)
                      -+-|||.|+=
T Consensus        33 CnlCGFNP~P   42 (61)
T pfam05715        33 CNLCGFNPNP   42 (61)
T ss_pred             HCCCCCCCCC
T ss_conf             4155889980


No 146
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=21.54  E-value=56  Score=13.38  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999998368514334157767202232578407774144899999997314
Q gi|254780803|r    9 ILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTS   64 (165)
Q Consensus         9 ~l~~~~~~~~ls~CGf~PlY~~~~~~~~~~l~~I~i~~~~~r~~~~i~n~L~~~~~   64 (165)
                      +++++.+-++..||==-.--..++.-.........|...++..++-+...|.++-+
T Consensus         3 ~~~i~~l~llc~gcie~~~v~~~~~in~dsv~dy~ia~ANNaF~FdlyS~~~~~~~   58 (410)
T COG4826           3 ILLIFLLALLCIGCIEDSAVNTKNTINTDSVEDYDIAAANNAFAFDLYSELAKQEG   58 (410)
T ss_pred             EEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCC
T ss_conf             71999999997441354441443343777655333222254034789999986526


No 147
>pfam08627 CRT-like CRT-like. This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=20.74  E-value=52  Score=13.61  Aligned_cols=11  Identities=9%  Similarity=0.353  Sum_probs=5.6

Q ss_pred             HHCCCCEEEEE
Q ss_conf             83685143341
Q gi|254780803|r   19 INSCSVYPFYY   29 (165)
Q Consensus        19 ls~CGf~PlY~   29 (165)
                      |..-||-|+++
T Consensus        93 LtnygyvPIf~  103 (130)
T pfam08627        93 LTNYGYVPIFG  103 (130)
T ss_pred             HHHCCHHHHHH
T ss_conf             88427368999


No 148
>PRK04168 hypothetical protein; Provisional
Probab=20.63  E-value=58  Score=13.29  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             578899999999999983685
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCS   23 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CG   23 (165)
                      .++.+.+.+++.+.++++||.
T Consensus         4 ~~~~~~~~~~~~~~~~~~g~~   24 (336)
T PRK04168          4 GRRKIVIVILLLLALVFLGCV   24 (336)
T ss_pred             CCEEHHHHHHHHHHHHHCCCC
T ss_conf             532203799999999970555


No 149
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=20.62  E-value=59  Score=13.26  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             5788999999999999836851433
Q gi|254780803|r    3 YKRILRILVVFNFFLLINSCSVYPF   27 (165)
Q Consensus         3 ~~ri~k~l~~~~~~~~ls~CGf~Pl   27 (165)
                      |+|+++.++.+.+.+.++.|+-.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~   25 (551)
T PRK09558          1 MMKLLKGLVALALLAALALCGSTAC   25 (551)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9258999999999999874067664


No 150
>pfam04549 CD47 CD47 transmembrane region. This family represents the transmembrane region of CD47 leukocyte antigen.
Probab=20.49  E-value=59  Score=13.25  Aligned_cols=20  Identities=35%  Similarity=0.637  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             9999999999836851433415
Q gi|254780803|r    9 ILVVFNFFLLINSCSVYPFYYL   30 (165)
Q Consensus         9 ~l~~~~~~~~ls~CGf~PlY~~   30 (165)
                      ++.+..+.+-+++|  .|+|+.
T Consensus       106 ilsvvgl~Ls~~~C--~~v~G~  125 (156)
T pfam04549       106 ILSVVGLALSLSGC--NPVYGY  125 (156)
T ss_pred             HHHHHHHHHHHHCC--CHHHHH
T ss_conf             99999999999448--403279


No 151
>COG2859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41  E-value=45  Score=14.00  Aligned_cols=18  Identities=11%  Similarity=0.093  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHCCCCE
Q ss_conf             999999999998368514
Q gi|254780803|r    8 RILVVFNFFLLINSCSVY   25 (165)
Q Consensus         8 k~l~~~~~~~~ls~CGf~   25 (165)
                      ..+..+.+++.|++|||-
T Consensus         8 ~~~~~~ll~l~l~a~g~i   25 (237)
T COG2859           8 PALATGLLSLILSASGFI   25 (237)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             789999999999988999


Done!