RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780803|ref|YP_003065216.1| hypothetical protein
CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>gnl|CDD|150583 pfam09927, DUF2159, Predicted secreted (periplasmic) protein
           (DUF2159).  This domain, found in various hypothetical
           prokaryotic proteins, has no known function.
          Length = 120

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 71  LYQLEVNIDSFTDH-AISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSD 129
            Y+L V +D+  +   I          +T  A Y   +++   ++        + +D + 
Sbjct: 32  RYRLSVRLDTSRESLGIRPDNDTTRYNLTGTATYTLVDLATGKVVASGTVTSFTSYDATG 91

Query: 130 QQFSQLRSHKSSEEKAIQELSENIYIDII 158
             ++ L + + +EE+  +EL++ I   + 
Sbjct: 92  STYATLAAERDAEERLARELADQIVTRLA 120


>gnl|CDD|152060 pfam11624, M157, MHC class I-like protein M157.  This family of
           proteins represents M157,a divergent form of MHC class
           I-like proteins which is the protein product of the
           mouse cytomegalovirus. This protein is unique in its
           ability to engage both activating (Ly49H) and inhibitory
           (Ly49I) natural killer cell receptors. M157 is involved
           in intra- and intermolecular interacts within and
           between its domains to form a compact MHC-like molecule.
          Length = 256

 Score = 27.2 bits (60), Expect = 2.1
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 8   RILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTSTVR 67
           RI V +   LL  S  V   Y+  ++ R  Y          +  K  I  +  FLT    
Sbjct: 67  RICVRYTCLLL-KSDVVCDVYHTTDRVRVTYTG--------QTGKINIQGNGTFLTDDAN 117

Query: 68  TKNLYQLEVNID 79
            + LY L  N+D
Sbjct: 118 ERGLYMLLSNVD 129


>gnl|CDD|183156 PRK11478, PRK11478, putative lyase; Provisional.
          Length = 129

 Score = 26.8 bits (59), Expect = 3.1
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 82  TDHAISNAFFKNIGRITLKAKYYFKEI-SGKNILYENNTDVTSLFDF 127
           TD+A+S AF+ +I   TL+++ Y +   S K  L  N   V  LF F
Sbjct: 15  TDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSF 61


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,561,884
Number of extensions: 148658
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 32
Length of query: 165
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,136,185
Effective search space: 326758615
Effective search space used: 326758615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)