RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780803|ref|YP_003065216.1| hypothetical protein
CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM;
           2.00A {Haloarcula marismortui} (A:61-246)
          Length = 186

 Score = 26.1 bits (56), Expect = 2.9
 Identities = 2/18 (11%), Positives = 4/18 (22%)

Query: 77  NIDSFTDHAISNAFFKNI 94
                +   I   F +  
Sbjct: 168 PDPEASAKNIRQTFDRMA 185


>1iq0_A Arginyl-tRNA synthetase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase; 2.30A {Thermus thermophilus}
           (A:99-152,A:233-398)
          Length = 220

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 84  HAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSE- 142
           H  + A    I R            +G+ +L  N  D T      D    +    ++   
Sbjct: 24  HLRNIALGDAIAR--------ILAYAGREVLVLNYIDDTRY----DLLVWESDIVRAGLL 71

Query: 143 EKAIQELSENIYI 155
           +KA+  L ++ ++
Sbjct: 72  QKALALLEQSPHV 84


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,175,274
Number of extensions: 46887
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 9
Length of query: 165
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 83
Effective length of database: 2,184,039
Effective search space: 181275237
Effective search space used: 181275237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)