HHsearch alignment for GI: 254780804 and conserved domain: COG1466
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=335.35 Aligned_cols=329 Identities=20% Similarity=0.276 Sum_probs=289.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC
Q ss_conf 33378875321001013847999569965899999999997335666773077620889641899999987178888882
Q gi|254780804|r 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 (352)
Q Consensus 4 i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352)
T Consensus 1 ~~~~~~~~~l~~~~--~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~lF~~~ 75 (334)
T COG1466 1 MYPEELAKHLKKKN--LMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSE--LDWADLLSELESPSLFGEK 75 (334)
T ss_pred CCHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCC--CCHHHHHHHHHCCCCCCCC
T ss_conf 97378999861478--751899966864689999999999734-315661345436555--6899999886276877888
Q ss_pred EEEEEECCCCH--HHHHHHHHHHHHCCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 39998477410--457898898851056-560799985265431135667654311210146644200135889887543
Q gi|254780804|r 84 KIILIENLSTE--KKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352)
Q Consensus 84 klIii~~~~~~--k~~~~~l~~~~~~~~-~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352)
T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 155 (334)
T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKE 155 (334)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 57998776545664278999998536897868999961887527787898887444734662588778899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998
Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352)
Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352)
T Consensus 156 ~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L 234 (334)
T COG1466 156 LGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDL 234 (334)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 18988999999999985882999999999998747898-66799999997364557889999999878989999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995
Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352)
Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352)
T Consensus 235 ~~~ge~p~~il~~l~~~f~~~~~l~~~~~-~g~~~~~~~~~l~--~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~~ 311 (334)
T COG1466 235 LLEGEEPLKLLAALTRQFRLLLQLKALAE-KGKSLQQAAKSLG--IPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQI 311 (334)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 97699889999999999999999999997-3646999998828--92878899999998759999999999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHH
Q ss_conf 328999899999999999996
Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQT 341 (352)
Q Consensus 321 K~~~~~~~~il~~~ll~l~~~ 341 (352)
T Consensus 312 K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 312 KTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HCCCCCCCHHHHHHHHHHHHC
T ss_conf 457766006899999998542