HHsearch alignment for GI: 254780804 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=98.77 E-value=2.7e-07 Score=67.30 Aligned_cols=198 Identities=15% Similarity=0.047 Sum_probs=143.7
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 898898851056560799985265431135667654-3112101466442001358898875430256675679999962
Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352)
Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352)
T Consensus 662 ~~~~~r~~~~~~~~~~~~~SCNYs---S---KIIePIQSRCavFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~ 735 (863)
T PRK04132 662 YDITCHNDHSFIANGFVSHNCNYS---S---KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYV 735 (863)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC---C---CCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 999987787642056179866760---4---0741665562478836899999999999999974997677899999997
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHH
Q ss_conf 00123556899999975103444348888877531012211146788876410236999999985-31100014589999
Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFL 255 (352)
Q Consensus 177 ~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~ 255 (352)
T Consensus 736 aeGDMRkAIN~LQsaa--~~~-~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~~ll~~~GlS~~DII~~i~ 812 (863)
T PRK04132 736 AEGDMRRAINVLQAAA--ALD-TKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMH 812 (863)
T ss_pred CCCCHHHHHHHHHHHH--HCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 5674899999999998--616-9878889999708999899999999997299899999999999966969899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999830256898999986089999768999999986499899999999999999995328999899999999
Q gi|254780804|r 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 (352)
Q Consensus 256 ~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~l 335 (352)
T Consensus 813 r~v~~l------------~--------------------------ipe~~kv~li~~ige~e~Rl~e-Ga~e~IQL~ALl 853 (863)
T PRK04132 813 REVFNL------------P--------------------------IDEPKKVYLADKIGEYNFRLVE-GANEMIQLEALL 853 (863)
T ss_pred HHHHHC------------C--------------------------CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 999617------------9--------------------------9878999999999766703314-888699999999
Q ss_pred HHHHHHHH
Q ss_conf 99999631
Q gi|254780804|r 336 LYIAQTAC 343 (352)
Q Consensus 336 l~l~~~a~ 343 (352)
T Consensus 854 A~f~l~g~ 861 (863)
T PRK04132 854 AQFTLMGK 861 (863)
T ss_pred HHHHHHCC
T ss_conf 99997357