HHsearch alignment for GI: 254780804 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=99.43  E-value=2.9e-10  Score=86.96  Aligned_cols=200  Identities=22%  Similarity=0.225  Sum_probs=140.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHH--HCCHHHHH-HHHHCCCCCC-CCEEEEEECCCCH--
Q ss_conf             8479995699658999999999973356667730776208896--41899999-9871788888-8239998477410--
Q gi|254780804|r   21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI--QKNISTFW-NEINSTSLFS-KKKIILIENLSTE--   94 (352)
Q Consensus        21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~--~~d~~~l~-~~~~t~slF~-~~klIii~~~~~~--   94 (352)
T Consensus        40 ~k~lLL~GPpGvGKTT~a~~lAk~~g------~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~  113 (403)
T PRK04195         40 KKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHG  113 (403)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf             74699889399879999999999849------985997710114789999999987606887788734999634344572


Q ss_pred             ---HHHHHHHHHHHHCCCCCEEEEEEECCC-CCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             ---457898898851056560799985265-4311-35667654311210146644200135889887543025667567
Q gi|254780804|r   95 ---KKVLDCLEEIIIKNICNHIIIIKSNEI-KKNN-TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA  169 (352)
Q Consensus        95 ---k~~~~~l~~~~~~~~~~~~li~~a~~l-~k~~-kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a  169 (352)
T Consensus       114 ~~d~gg~~al~~~ik~s~--~PiIli~Nd~~~~~~~~lr------s~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~a  185 (403)
T PRK04195        114 NADRGGVRAILEIIKKAK--NPIILTANDPYDPSLRPLR------NACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEA  185 (403)
T ss_pred             HHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHH------HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             444799999999985488--7089982684556717799------76612217994999999999999997699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             99999620012355689999997510344434888887753101221114678887641-0236999999
Q gi|254780804|r  170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLAD  238 (352)
Q Consensus       170 ~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~-~~~~a~~~l~  238 (352)
T Consensus       186 L~~Ia~~s~GDlR~aIN~LQ~~~---~~~~~~~~~~~~~-~~rd~~~~if~~~~~if~~~~~~~a~~~~~  251 (403)
T PRK04195        186 LREIAERSGGDLRSAINDLQAIA---EGGGRITLDDVKT-GERDREESIFEALDAVFKSRNYDQALEASY  251 (403)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH---CCCCCCCHHHHHH-HCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999987973999999999997---4899775666664-135231438999999975698999999885