HHsearch alignment for GI: 254780804 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.43 E-value=2.9e-10 Score=86.96 Aligned_cols=200 Identities=22% Similarity=0.225 Sum_probs=140.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHH--HCCHHHHH-HHHHCCCCCC-CCEEEEEECCCCH--
Q ss_conf 8479995699658999999999973356667730776208896--41899999-9871788888-8239998477410--
Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI--QKNISTFW-NEINSTSLFS-KKKIILIENLSTE-- 94 (352)
Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~--~~d~~~l~-~~~~t~slF~-~~klIii~~~~~~-- 94 (352)
T Consensus 40 ~k~lLL~GPpGvGKTT~a~~lAk~~g------~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~ 113 (403)
T PRK04195 40 KKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHG 113 (403)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 74699889399879999999999849------985997710114789999999987606887788734999634344572
Q ss_pred ---HHHHHHHHHHHHCCCCCEEEEEEECCC-CCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf ---457898898851056560799985265-4311-35667654311210146644200135889887543025667567
Q gi|254780804|r 95 ---KKVLDCLEEIIIKNICNHIIIIKSNEI-KKNN-TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 (352)
Q Consensus 95 ---k~~~~~l~~~~~~~~~~~~li~~a~~l-~k~~-kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a 169 (352)
T Consensus 114 ~~d~gg~~al~~~ik~s~--~PiIli~Nd~~~~~~~~lr------s~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~a 185 (403)
T PRK04195 114 NADRGGVRAILEIIKKAK--NPIILTANDPYDPSLRPLR------NACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEA 185 (403)
T ss_pred HHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHH------HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 444799999999985488--7089982684556717799------76612217994999999999999997699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 99999620012355689999997510344434888887753101221114678887641-0236999999
Q gi|254780804|r 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLAD 238 (352)
Q Consensus 170 ~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~-~~~~a~~~l~ 238 (352)
T Consensus 186 L~~Ia~~s~GDlR~aIN~LQ~~~---~~~~~~~~~~~~~-~~rd~~~~if~~~~~if~~~~~~~a~~~~~ 251 (403)
T PRK04195 186 LREIAERSGGDLRSAINDLQAIA---EGGGRITLDDVKT-GERDREESIFEALDAVFKSRNYDQALEASY 251 (403)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---CCCCCCCHHHHHH-HCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999987973999999999997---4899775666664-135231438999999975698999999885