HHsearch alignment for GI: 254780804 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=100.00 E-value=0 Score=381.51 Aligned_cols=326 Identities=16% Similarity=0.240 Sum_probs=293.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC
Q ss_conf 33378875321001013847999569965899999999997335666773077620889641899999987178888882
Q gi|254780804|r 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 (352)
Q Consensus 4 i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352)
T Consensus 2 ~~~~~l~~~lkk~l---~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~--~~~~l~~~~~t~slf~~k 76 (336)
T PRK05574 2 LAPEQLEAHLKKGL---APVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSET--DWDDVLEACQSLPLFSDR 76 (336)
T ss_pred CCHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CHHHHHHHHCCCCCCCCC
T ss_conf 89899999982789---8679998586999999999999986077865305899716869--999999986489977897
Q ss_pred EEEEEECCCCH-----HHHHHHHHHHHHCCCCCEEEEEEE--CCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 39998477410-----457898898851056560799985--265431135667654-3112101466442001358898
Q gi|254780804|r 84 KIILIENLSTE-----KKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 84 klIii~~~~~~-----k~~~~~l~~~~~~~~~~~~li~~a--~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~ 155 (352)
T Consensus 77 rlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~ 156 (336)
T PRK05574 77 KLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQ 156 (336)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHH
T ss_conf 59999888766531137999999998707999976999987786336888899999998480799806999899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87543025667567999996200123556899999975103444348888877531012211146788876410236999
Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 (352)
Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~ 235 (352)
T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~-~~It~~dV~~~v~~~~~~~~f~L~dai~~~~~~~al~ 235 (336)
T PRK05574 157 QRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPD-GKITLEDVEEAVPDSARFDVFDLVDAILAGKIARALR 235 (336)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 999984999898999999997211399999999999983788-8878999999861643356799999998789999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99998531100014589999999999999998302568989999860899997689999999864998999999999999
Q gi|254780804|r 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352)
Q Consensus 236 ~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352)
T Consensus 236 ~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~-~g~~~~~i~~~l~--i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~ 312 (336)
T PRK05574 236 ILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQ-QGYPLQQLFKELR--VWPYRRKLALRALQRLSLKQLEQAIQLLAE 312 (336)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999997799729999999999999999999987-6999999998839--999999999999972999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999953289998999999999999
Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
T Consensus 313 ~D~~iK~-~~d~~~~lEl~ll~l~ 335 (336)
T PRK05574 313 TDRQIKT-DYDKDLWLELFLLSLL 335 (336)
T ss_pred HHHHHHC-CCCCCHHHHHHHHHHH
T ss_conf 9999718-9995499999999842