HHsearch alignment for GI: 254780804 and conserved domain: PRK05707

>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=99.31  E-value=1.2e-08  Score=76.19  Aligned_cols=297  Identities=13%  Similarity=0.102  Sum_probs=176.8

Q ss_pred             CCCCCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--------------------CCCCCEEEEE
Q ss_conf             976333--788753210010138479995699658999999999973356--------------------6677307762
Q gi|254780804|r    1 MATIES--HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--------------------YHDPFSLVVL   58 (352)
Q Consensus         1 ~~~i~~--~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~--------------------~~~~~~~~~~   58 (352)
T Consensus         1 ~~~~yPW~~~~w~~l~~~~rl~HA-~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~p   79 (328)
T PRK05707          1 MAEIYPWQQSLWQQLAGRGRHAHA-YLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEP   79 (328)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
T ss_conf             986766748999999977982204-6447999867999999999998489999989998888999987589998799842


Q ss_pred             EHH--HH-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             088--96-4189999998717888888239998477410-4578988988510565607999852654311356676543
Q gi|254780804|r   59 NAL--EI-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF  134 (352)
Q Consensus        59 ~~~--e~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~  134 (352)
T Consensus        80 e~~~~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lL---pTI--~  154 (328)
T PRK05707         80 EEADKPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLL---PTI--K  154 (328)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCH---HHH--H
T ss_conf             66677697999999999983176678957999502877389999999998507898759998609934482---588--7


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf             11210146644200135889887543025667567999996200123556899999975103444348888877531012
Q gi|254780804|r  135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH  214 (352)
Q Consensus       135 ~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~  214 (352)
T Consensus       155 SRCq~~~~~~p~~e~~~~~L~~~~~----~~~~~~a~~ll~la~G~p~~A~------~l~~~~~----~~~r~~~-----  215 (328)
T PRK05707        155 SRCQQLACPLPSNEPSLQWLQQALP----ESDAEERIELLTLAAGSPLRAL------QLHAQGV----REQRARV-----  215 (328)
T ss_pred             HCCEEEECCCCCHHHHHHHHHHHCC----CCCHHHHHHHHHHCCCCHHHHH------HHHCCCH----HHHHHHH-----
T ss_conf             4141334899899999999997556----5578999999997499999999------8748668----9999999-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf             21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r  215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL  294 (352)
Q Consensus       215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~  294 (352)
T Consensus       216 ----~~~l~~l~~~~~-~~~~~~~~~~--k~~~~~~l~~l~~~~~D~l~~~~~~-----~~~~l-------~~~d~~~~i  276 (328)
T PRK05707        216 ----VDGVKKLLKQQQ-SASQLAESWL--KVPLPLLFDWFCDWAHLILRYQLTQ-----DEEGL-------GLADMRKVL  276 (328)
T ss_pred             ----HHHHHHHHHCCC-CHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHC-------CCHHHHHHH
T ss_conf             ----999999983878-8999999975--0579999999999999999998259-----71410-------478899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH
Q ss_conf             99986499899999999999999995328-999899999999999996
Q gi|254780804|r  295 QESLRIWNKNLVRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQT  341 (352)
Q Consensus       295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~~  341 (352)
T Consensus       277 ~~la~~~s~~~l~~~~~~l~~~r~~l~~~~NvN~~L~lE~Lll~~~~L  324 (328)
T PRK05707        277 QYLAQKSPQAKVLALQQWLLEQRQKVLGKANLNRVLLLEALLVQWAGL  324 (328)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             999872999999999999999999986369988899999999998574