HHsearch alignment for GI: 254780804 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=99.31 E-value=1.2e-08 Score=76.19 Aligned_cols=297 Identities=13% Similarity=0.102 Sum_probs=176.8
Q ss_pred CCCCCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--------------------CCCCCEEEEE
Q ss_conf 976333--788753210010138479995699658999999999973356--------------------6677307762
Q gi|254780804|r 1 MATIES--HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--------------------YHDPFSLVVL 58 (352)
Q Consensus 1 ~~~i~~--~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~--------------------~~~~~~~~~~ 58 (352)
T Consensus 1 ~~~~yPW~~~~w~~l~~~~rl~HA-~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~p 79 (328)
T PRK05707 1 MAEIYPWQQSLWQQLAGRGRHAHA-YLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEP 79 (328)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC
T ss_conf 986766748999999977982204-6447999867999999999998489999989998888999987589998799842
Q ss_pred EHH--HH-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 088--96-4189999998717888888239998477410-4578988988510565607999852654311356676543
Q gi|254780804|r 59 NAL--EI-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 (352)
Q Consensus 59 ~~~--e~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~ 134 (352)
T Consensus 80 e~~~~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lL---pTI--~ 154 (328)
T PRK05707 80 EEADKPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLL---PTI--K 154 (328)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCH---HHH--H
T ss_conf 66677697999999999983176678957999502877389999999998507898759998609934482---588--7
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 11210146644200135889887543025667567999996200123556899999975103444348888877531012
Q gi|254780804|r 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 135 ~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
T Consensus 155 SRCq~~~~~~p~~e~~~~~L~~~~~----~~~~~~a~~ll~la~G~p~~A~------~l~~~~~----~~~r~~~----- 215 (328)
T PRK05707 155 SRCQQLACPLPSNEPSLQWLQQALP----ESDAEERIELLTLAAGSPLRAL------QLHAQGV----REQRARV----- 215 (328)
T ss_pred HCCEEEECCCCCHHHHHHHHHHHCC----CCCHHHHHHHHHHCCCCHHHHH------HHHCCCH----HHHHHHH-----
T ss_conf 4141334899899999999997556----5578999999997499999999------8748668----9999999-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
T Consensus 216 ----~~~l~~l~~~~~-~~~~~~~~~~--k~~~~~~l~~l~~~~~D~l~~~~~~-----~~~~l-------~~~d~~~~i 276 (328)
T PRK05707 216 ----VDGVKKLLKQQQ-SASQLAESWL--KVPLPLLFDWFCDWAHLILRYQLTQ-----DEEGL-------GLADMRKVL 276 (328)
T ss_pred ----HHHHHHHHHCCC-CHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHC-------CCHHHHHHH
T ss_conf ----999999983878-8999999975--0579999999999999999998259-----71410-------478899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH
Q ss_conf 99986499899999999999999995328-999899999999999996
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQT 341 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~~ 341 (352)
T Consensus 277 ~~la~~~s~~~l~~~~~~l~~~r~~l~~~~NvN~~L~lE~Lll~~~~L 324 (328)
T PRK05707 277 QYLAQKSPQAKVLALQQWLLEQRQKVLGKANLNRVLLLEALLVQWAGL 324 (328)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 999872999999999999999999986369988899999999998574