HHsearch alignment for GI: 254780804 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=98.71 E-value=1.2e-05 Score=56.36 Aligned_cols=260 Identities=11% Similarity=0.074 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC----------CEEEEE--EHHHH---HCCHHHH
Q ss_conf 37887532100101384799956996589999999999733566677----------307762--08896---4189999
Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDP----------FSLVVL--NALEI---QKNISTF 70 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~----------~~~~~~--~~~e~---~~d~~~l 70 (352)
T Consensus 5 ~We~L~~~i~~~Rl~HA-yLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l 83 (290)
T PRK05917 5 AWEALLQRVRDQKVPSA-ILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 99999999983996606-87689998659999999999985789961688987468998599615777887867899999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99871788888823999847741-04578988988510565607999852654311356676543112101466442001
Q gi|254780804|r 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 (352)
Q Consensus 71 ~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~ 149 (352)
T Consensus 84 ~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~l---LpTI--~SRCQ~I~i~~----- 153 (290)
T PRK05917 84 KKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRL---PPTI--RSRSLSIHIPG----- 153 (290)
T ss_pred HHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHC---CHHH--HHCCCEEECCC-----
T ss_conf 9996418646882699975677638999999999734798785999986992548---2377--63351167776-----
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 35889887543025667567999996200123556899999975103444348888877531012211146788876410
Q gi|254780804|r 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 (352)
Q Consensus 150 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~ 229 (352)
T Consensus 154 ----------~e~~~i~~e~~~~l~~~a~g~~--------------------~~~~~~~~~k~~~d~-----~~~~~--- 195 (290)
T PRK05917 154 ----------EEKTLPSKEDIAYLIRYAQGKE--------------------SVTEVGQIVKGSADT-----DKQVL--- 195 (290)
T ss_pred ----------CCCCCCCHHHHHHHHHHHCCCH--------------------HHHHHHHHHCCHHHH-----HHHHH---
T ss_conf ----------2013478899999999846973--------------------888999883012776-----67877---
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 23699999998531100014589999999999999998302568989999860899997689999999864998999999
Q gi|254780804|r 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 (352)
Q Consensus 230 ~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~ 309 (352)
T Consensus 196 --------------r~k~~~~l~~ll~~~Rd~~~~~~~~-----~~s-~l------~~~~~~~~i-~~~---~~~~l~~v 245 (290)
T PRK05917 196 --------------RDKTKRMLEVLLQLFRDRFTLALKV-----PAS-AL------AYPDYLKEI-LTL---PVLPLEKV 245 (290)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHCCC-----CHH-HH------CCCHHHHHH-HHC---CCCCHHHH
T ss_conf --------------8999999999999999999986169-----735-52------280689999-866---35679999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999953289998999999999999963102
Q gi|254780804|r 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 (352)
Q Consensus 310 l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~~ 345 (352)
T Consensus 246 ~~~i~~a~~~l~~-~~~~~~~~~~~~l~~~~l~~~~ 280 (290)
T PRK05917 246 LSIIERAVQALDN-SSSATSCLEWVALQLVSLQNRQ 280 (290)
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998503-6766899999999999876377