HHsearch alignment for GI: 254780804 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=100.00 E-value=0 Score=471.14 Aligned_cols=342 Identities=25% Similarity=0.384 Sum_probs=327.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
T Consensus 1 mmki~~~~~~~f~~~p~-~~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF 79 (343)
T PRK06585 1 MMKIKAHEIDRFLARPD-GKIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLF 79 (343)
T ss_pred CCCCCHHHHHHHHHCCC-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCC
T ss_conf 98767899999981986-47658999638764799999999997255667874157747998833999999998476876
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88239998477410457898898851056560799985265431135667654311210146644200135889887543
Q gi|254780804|r 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352)
Q Consensus 81 ~~~klIii~~~~~~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352)
T Consensus 80 ~~~rlI~i~~~~d--~~~~~l~~~l~~~~~~~~lIi~a~~L~k~skLrk~~e~~~~~~~i~cY~d~~~~l~~~i~~~l~~ 157 (343)
T PRK06585 80 GGRRLIWVRAGGK--SLAAALKALLAEPPGDAFIVIEAGDLKKGSSLRKLFETAASAAAIPCYADDERDLARLIDDELAK 157 (343)
T ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8984899726872--56999999981789982899973897731189999986478699950069988999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998
Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352)
Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352)
T Consensus 158 ~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~da~l~G~~~~a~~~l~~l 237 (343)
T PRK06585 158 AGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAGFERALDRA 237 (343)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 29997799999999873427999999999999984899978999999986864102499999999808999999999998
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995
Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352)
Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352)
T Consensus 238 ~~~g~~pi~il~~l~~~~~~L~~i~~~~~-~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~~~L~~al~~l~~~E~~~ 316 (343)
T PRK06585 238 RAEGTAPVLILRAALRHFQQLHIVRLKVE-NGKSAAQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQQAELDC 316 (343)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 84578779999999999999999999987-03459999986489998466999999998099999999999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 32899989999999999999631025
Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQTACKNN 346 (352)
Q Consensus 321 K~~~~~~~~il~~~ll~l~~~a~~~~ 346 (352)
T Consensus 317 K~~~~~~~~i~~~~ll~ia~~a~~~~ 342 (343)
T PRK06585 317 RRNPALAEAIAQRALLSIAVEARRRG 342 (343)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66996599999999999999987537