HHsearch alignment for GI: 254780804 and conserved domain: PRK06585

>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=100.00  E-value=0  Score=471.14  Aligned_cols=342  Identities=25%  Similarity=0.384  Sum_probs=327.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf             97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r    1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF   80 (352)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF   80 (352)
T Consensus         1 mmki~~~~~~~f~~~p~-~~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF   79 (343)
T PRK06585          1 MMKIKAHEIDRFLARPD-GKIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLF   79 (343)
T ss_pred             CCCCCHHHHHHHHHCCC-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCC
T ss_conf             98767899999981986-47658999638764799999999997255667874157747998833999999998476876


Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             88239998477410457898898851056560799985265431135667654311210146644200135889887543
Q gi|254780804|r   81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI  160 (352)
Q Consensus        81 ~~~klIii~~~~~~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~  160 (352)
T Consensus        80 ~~~rlI~i~~~~d--~~~~~l~~~l~~~~~~~~lIi~a~~L~k~skLrk~~e~~~~~~~i~cY~d~~~~l~~~i~~~l~~  157 (343)
T PRK06585         80 GGRRLIWVRAGGK--SLAAALKALLAEPPGDAFIVIEAGDLKKGSSLRKLFETAASAAAIPCYADDERDLARLIDDELAK  157 (343)
T ss_pred             CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             8984899726872--56999999981789982899973897731189999986478699950069988999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02566756799999620012355689999997510344434888887753101221114678887641023699999998
Q gi|254780804|r  161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF  240 (352)
Q Consensus       161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l  240 (352)
T Consensus       158 ~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~da~l~G~~~~a~~~l~~l  237 (343)
T PRK06585        158 AGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAGFERALDRA  237 (343)
T ss_pred             CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             29997799999999873427999999999999984899978999999986864102499999999808999999999998


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             53110001458999999999999999830256898999986089999768999999986499899999999999999995
Q gi|254780804|r  241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA  320 (352)
Q Consensus       241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~  320 (352)
T Consensus       238 ~~~g~~pi~il~~l~~~~~~L~~i~~~~~-~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~~~L~~al~~l~~~E~~~  316 (343)
T PRK06585        238 RAEGTAPVLILRAALRHFQQLHIVRLKVE-NGKSAAQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQQAELDC  316 (343)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             84578779999999999999999999987-03459999986489998466999999998099999999999999999998


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             32899989999999999999631025
Q gi|254780804|r  321 RKKKYLEKNIIFQTILYIAQTACKNN  346 (352)
Q Consensus       321 K~~~~~~~~il~~~ll~l~~~a~~~~  346 (352)
T Consensus       317 K~~~~~~~~i~~~~ll~ia~~a~~~~  342 (343)
T PRK06585        317 RRNPALAEAIAQRALLSIAVEARRRG  342 (343)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             66996599999999999999987537