HHsearch alignment for GI: 254780804 and conserved domain: PRK06871
>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=99.10 E-value=7.9e-07 Score=64.26 Aligned_cols=284 Identities=9% Similarity=0.012 Sum_probs=162.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC--------------------CCCCEEEEE-EHHHHH-CC
Q ss_conf 87532100101384799956996589999999999733566--------------------677307762-088964-18
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY--------------------HDPFSLVVL-NALEIQ-KN 66 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~--------------------~~~~~~~~~-~~~e~~-~d 66 (352)
T Consensus 13 l~~~~~~~-r~~H-A~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~ 90 (324)
T PRK06871 13 ITQTFLQG-RGHH-ALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQ 90 (324)
T ss_pred HHHHHHCC-CCCE-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHH
T ss_conf 99999869-9543-787689999789999999999982899999998888989999973899987998467888788999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999998717888888239998477410-457898898851056560799985265431135667654311210146644
Q gi|254780804|r 67 ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352)
Q Consensus 67 ~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352)
T Consensus 91 IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~l---l~TI--~SRCq~~~~~~p 165 (324)
T PRK06871 91 VREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASL---LATI--YSRCQTWLIHVP 165 (324)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC---CCHH--HHCCCCEECCCC
T ss_conf 99999998646220596699975888857999999999833898783899987870103---2408--626612008994
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 20013588988754302566756799999620012355689999997510344434888887753101221114678887
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352)
T Consensus 166 ~~~~~~~wL~~~~-----~~~~~~~~~al~~~~g~pl~A~~------~~~~~~~~~r~~~~~~l~~~~~~~~~~~ll~-- 232 (324)
T PRK06871 166 EEQIALDWLQAQS-----SGEIQEIQTALRINYGRPLLALT------FLEQGLLEQRKTFLRQFWLFYRRRSPLELLP-- 232 (324)
T ss_pred CHHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCHHHHHH------HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH--
T ss_conf 9999999999746-----88729999999976998799999------8687799999999999999971689999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 64102369999999853110001458999999999999999830256898999986089999768999999986499899
Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 (352)
Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~ 305 (352)
T Consensus 233 -------------~~--~k~~~~~~L~wL~~~l~D~lk~k~-----g~~~~~--------in~D~~~~i~~la~~~s~~~ 284 (324)
T PRK06871 233 -------------LF--DKEKVLQQLDWLLAFLSDALKAKL-----DIDSGW--------INQDLGRGILQFSQQQSAQG 284 (324)
T ss_pred -------------HH--CCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCE--------ECHHHHHHHHHHHHHCCHHH
T ss_conf -------------97--514588899999999999999844-----887560--------75889999999998659999
Q ss_pred HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
Q ss_conf 999999999999995328-99989999999999999
Q gi|254780804|r 306 VRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 306 l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~ 340 (352)
T Consensus 285 L~~~~~~l~~~r~~L~~~~~lN~eLll~~~L~~l~~ 320 (324)
T PRK06871 285 LLKAIQIMQKVRSDLLQINAVNQELILLDGLTRLVT 320 (324)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999998445787899999999999999