HHsearch alignment for GI: 254780804 and conserved domain: PRK06893

>PRK06893 DNA replication initiation factor; Validated.
Probab=98.57  E-value=2.1e-05  Score=54.84  Aligned_cols=181  Identities=12%  Similarity=0.159  Sum_probs=117.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH-CCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHH
Q ss_conf             84799956996589999999999733566677307762088964-18999999871788888823999847741---045
Q gi|254780804|r   21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINSTSLFSKKKIILIENLST---EKK   96 (352)
Q Consensus        21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~-~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~   96 (352)
T Consensus        39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~---~~~yi~~~~~~~~~~-~~l~~l~------~~d~l~iDDi~~i~g~~~  108 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR---TAIYIPLSKSQYFSP-AVLENLE------QQDLVCLDDLQAVIGNEE  108 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEEHHHHHHCCH-HHHHHHH------HCCEEEEECHHHHCCCHH
T ss_conf             987999899999889999999999997189---859997377564069-9998765------479799967234248838


Q ss_pred             HHHHHHHHHHCCC-CCEEEE-EEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             7898898851056-560799-9852654311--35667654311210146644200135889887543025667567999
Q gi|254780804|r   97 VLDCLEEIIIKNI-CNHIII-IKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI  172 (352)
Q Consensus        97 ~~~~l~~~~~~~~-~~~~li-~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~  172 (352)
T Consensus       109 ~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~y  188 (229)
T PRK06893        109 WELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANF  188 (229)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             99999999999997599179985798833221002679999968836996677757999999999996499999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHH
Q ss_conf             99620012355689999997510-3444348888877531
Q gi|254780804|r  173 LLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIIC  211 (352)
Q Consensus       173 L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~  211 (352)
T Consensus       189 l~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvkevL~  228 (229)
T PRK06893        189 LLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG  228 (229)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             9998347899999999999999998089999999999868