HHsearch alignment for GI: 254780804 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.57 E-value=2.1e-05 Score=54.84 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=117.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH-CCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHH
Q ss_conf 84799956996589999999999733566677307762088964-18999999871788888823999847741---045
Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINSTSLFSKKKIILIENLST---EKK 96 (352)
Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~-~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~ 96 (352)
T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~---~~~yi~~~~~~~~~~-~~l~~l~------~~d~l~iDDi~~i~g~~~ 108 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR---TAIYIPLSKSQYFSP-AVLENLE------QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEEHHHHHHCCH-HHHHHHH------HCCEEEEECHHHHCCCHH
T ss_conf 987999899999889999999999997189---859997377564069-9998765------479799967234248838
Q ss_pred HHHHHHHHHHCCC-CCEEEE-EEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 7898898851056-560799-9852654311--35667654311210146644200135889887543025667567999
Q gi|254780804|r 97 VLDCLEEIIIKNI-CNHIII-IKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 (352)
Q Consensus 97 ~~~~l~~~~~~~~-~~~~li-~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~ 172 (352)
T Consensus 109 ~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~y 188 (229)
T PRK06893 109 WELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANF 188 (229)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999999997599179985798833221002679999968836996677757999999999996499999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHH
Q ss_conf 99620012355689999997510-3444348888877531
Q gi|254780804|r 173 LLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIIC 211 (352)
Q Consensus 173 L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~ 211 (352)
T Consensus 189 l~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvkevL~ 228 (229)
T PRK06893 189 LLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 9998347899999999999999998089999999999868