HHsearch alignment for GI: 254780804 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=98.73 E-value=7.8e-06 Score=57.67 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC--------------CCCEEEE---------EEHHHH
Q ss_conf 78875321001013847999569965899999999997335666--------------7730776---------208896
Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH--------------DPFSLVV---------LNALEI 63 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~--------------~~~~~~~---------~~~~e~ 63 (352)
T Consensus 13 ~~~L~~ai~~~rl~h-AyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~~~g~~~~~~~~ 91 (314)
T PRK07399 13 IELLTAAIEQNRIAP-AYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEA 91 (314)
T ss_pred HHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 999999998599674-4877899983299999999999857899997665587518999778860562003454557789
Q ss_pred --------------HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
Q ss_conf --------------4189999998717888888239998477410-4578988988510565607999852654311356
Q gi|254780804|r 64 --------------QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 (352)
Q Consensus 64 --------------~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~ 128 (352)
T Consensus 92 ~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP~~~-~fILit~~~~------ 164 (314)
T PRK07399 92 EEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAPSPE------ 164 (314)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCC-EEEEEECCHH------
T ss_conf 876530268777879999999999731885688479998897871999999999861478785-6999979936------
Q ss_pred HHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 67654-31121014664420013588988754302566756799999620012355689999997510344434888887
Q gi|254780804|r 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352)
Q Consensus 129 k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352)
T Consensus 165 ~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~~---A~GspG~a~~~~~~~~~i-------~~e-l~ 233 (314)
T PRK07399 165 SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDNINEILDHPELLAL---AQGSPGAAIANIEQLQSI-------PPE-LL 233 (314)
T ss_pred HCCHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHC-------CHH-HH
T ss_conf 4914664187563389989999999999716643310278999988---179979999999998748-------699-99
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
Q ss_conf 75310122111467888764102369999999853110001458999999999999999830256898999986089999
Q gi|254780804|r 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 (352)
Q Consensus 208 ~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~ 287 (352)
T Consensus 234 ~~l~~~~-------------~~~~~~l~lak~i~~~----Ld~-------~~qlwl------------------------ 265 (314)
T PRK07399 234 QKLEQPP-------------KNPLEALELAKDISEE----LDI-------EQQLWL------------------------ 265 (314)
T ss_pred HHHHCCC-------------CCHHHHHHHHHHHHHH----HHH-------HHHHHH------------------------
T ss_conf 9986245-------------6899999998861266----788-------999999------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 768999999986499899999999999999995328999899999999999996
Q gi|254780804|r 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 (352)
Q Consensus 288 ~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~ 341 (352)
T Consensus 266 ---~~~l--q~~~w~~~~~~~~~~~le~~r~~L~~~-vqprL~~Ev~ll~l~~~ 313 (314)
T PRK07399 266 ---IDYL--QQHYWQKTKNSQLLKKLEKLRKQLLSY-VQPRLAWEVTLLELSQE 313 (314)
T ss_pred ---HHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCC
T ss_conf ---9999--999998600379999999999999852-88089999999999734