HHsearch alignment for GI: 254780804 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=98.94 E-value=6.1e-06 Score=58.38 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=166.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----------------------------CCEEEEE--
Q ss_conf 8753210010138479995699658999999999973356667----------------------------7307762--
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----------------------------PFSLVVL-- 58 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----------------------------~~~~~~~-- 58 (352)
T Consensus 28 ~L~~a~~~grl~H-A~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~hpdl~~i~r 106 (363)
T PRK07471 28 ALLDAYRSGRLHH-AWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAHGGLLTLER 106 (363)
T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCEEEEEC
T ss_conf 9999998599764-587679998188999999999985799977777678705312587772899995269998466762
Q ss_pred --EHHH------H-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
Q ss_conf --0889------6-4189999998717888888239998477410-4578988988510565607999852654311356
Q gi|254780804|r 59 --NALE------I-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 (352)
Q Consensus 59 --~~~e------~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~ 128 (352)
T Consensus 107 ~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~~~~----- 181 (363)
T PRK07471 107 SWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHAPAR----- 181 (363)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH-----
T ss_conf 001133321244539999999999724852489669998687873889999999972158988389986399777-----
Q ss_pred HHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 67654-31121014664420013588988754302566756799999620012355689999997510344434888887
Q gi|254780804|r 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352)
Q Consensus 129 k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352)
T Consensus 182 -llpTI~SRCq~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al------~l~~~~-~~~l~~~~~ 250 (363)
T PRK07471 182 -LLPTIRSRCRKLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRAL------RLAGGD-GLALYQRTT 250 (363)
T ss_pred -CHHHHHHHCCCCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHH------HHHCCC-HHHHHHHHH
T ss_conf -7799997352425899599999999998---43899998999999997589999999------874798-599999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
Q ss_conf 753101221114678887641023699999998531100014-5899999999999999983025689899998608999
Q gi|254780804|r 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA-LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 (352)
Q Consensus 208 ~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~-il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~ 286 (352)
T Consensus 251 ~ll~~~~~------------~d~~~~~~lad~~a~~~~~~~~~~l~l~~~~l~~~~r~~~----~~~~~--------~~~ 306 (363)
T PRK07471 251 ALLDTLPR------------LDRRALHALADAAAGGDRAAFALFLDLLDRWLARLARAGA----RNAGL--------PEA 306 (363)
T ss_pred HHHHHCCC------------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--------CCC
T ss_conf 99974767------------8999999999998168779999999999999999998752----27881--------001
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 976899999998649989999999999999999532899989999999999999631
Q gi|254780804|r 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 287 ~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
T Consensus 307 ~~~E~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~a~ 363 (363)
T PRK07471 307 VPGEAALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEAAR 363 (363)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 731799998608863089999999999999999986189889999999999999729