HHsearch alignment for GI: 254780804 and conserved domain: PRK07940

>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=99.36  E-value=2.5e-09  Score=80.78  Aligned_cols=296  Identities=11%  Similarity=0.061  Sum_probs=179.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC-------------------CCCEEEEEEHHHH-HCCHHHHHHHHHCCC
Q ss_conf             13847999569965899999999997335666-------------------7730776208896-418999999871788
Q gi|254780804|r   19 LSHFVFIFYGSDKGLIFELINQFKKNISITYH-------------------DPFSLVVLNALEI-QKNISTFWNEINSTS   78 (352)
Q Consensus        19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~-------------------~~~~~~~~~~~e~-~~d~~~l~~~~~t~s   78 (352)
T Consensus        38 ~~HA-yLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p  116 (395)
T PRK07940         38 MTHA-WLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRP  116 (395)
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf             6603-763689987889999999999669999999998787899987689987189826877688999999999985273


Q ss_pred             CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             8888239998477410-457898898851056560799985265431135667654-31121014664420013588988
Q gi|254780804|r   79 LFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEE  156 (352)
Q Consensus        79 lF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~  156 (352)
T Consensus       117 ~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~~------llpTI~SRcq~~~f~~~~~~~i~~~L~~  190 (395)
T PRK07940        117 TTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVED------VLPTIRSRCRHVALRTPSVEAVADVLVR  190 (395)
T ss_pred             CCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH------HHHHHHHHHEECCCCCCCHHHHHHHHHH
T ss_conf             0379559998077874899999999852178888699987399787------4468874400023799999999999987


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHCCC-CCC---------CCHHHHHHHHHCCC
Q ss_conf             7543025667567999996200123556------------8999999751034-443---------48888877531012
Q gi|254780804|r  157 SLLIGQKSISKEAKQILLANLGGDRIAS------------RNELQKLSSYCLE-DIL---------ITEQHVKDIICDTH  214 (352)
Q Consensus       157 ~~~~~g~~i~~~a~~~L~~~~g~d~~~l------------~~EleKL~ly~~~-~~~---------It~~dI~~~v~~~~  214 (352)
T Consensus       191 ~-----~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~~~~~~al~~a~~Ll~~~~~~~~~~~~~~d  265 (395)
T PRK07940        191 R-----DGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRLARVSDAVAAAEELVKAAEAEAKALTAERD  265 (395)
T ss_pred             C-----CCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0-----19998999999998089889999980688899999999999997037168999999999999999999888776


Q ss_pred             CCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             211146788876410236--------999999985311---------000145899999999999999983025689899
Q gi|254780804|r  215 VLYIEEIINATIQGKIYN--------AIMLADFFLASK---------MPSHALLHGFLQKFQLLEKIHIIKECSNISFEK  277 (352)
Q Consensus       215 ~~~if~L~dai~~~~~~~--------a~~~l~~l~~~g---------~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~  277 (352)
T Consensus       266 ~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld~~L~~L~~~~RD~L~~~~-----g~~~--  338 (395)
T PRK07940        266 EAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALDRALIDLAGLYRDVLLVQL-----GAGV--  338 (395)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCC--
T ss_conf             899999999843443330133211778999999999876677777777899999999999999999860-----8973--


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             998608999976899999998649989999999999999999532899989999999999999
Q gi|254780804|r  278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ  340 (352)
Q Consensus       278 ~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~  340 (352)
T Consensus       339 ------~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~-Nvnp~L~LE~lll~L~q  394 (395)
T PRK07940        339 ------GLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAV-NVKPLLAVEAMVAALRQ  394 (395)
T ss_pred             ------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_conf             ------555866999999999749999999999999999999884-59979999999999864