HHsearch alignment for GI: 254780804 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.42 E-value=5.8e-05 Score=51.91 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=119.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHHH
Q ss_conf 479995699658999999999973356667730776208896418999999871788888823999847741---04578
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKVL 98 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~~ 98 (352)
T Consensus 46 ~~l~l~G~~G~GKTHLLqA~~~~~~~~~---~~~~yl~~~~~~~~~~~~l~~l~~------~dll~iDDi~~i~g~~~~e 116 (235)
T PRK08084 46 GYIYLWGREGAGRSHLLHAACAELSQRG---DAVGYVPLDKRAWFVPEVLEGMEQ------LSLVCIDNIECIAGDELWE 116 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEEEHHHHHHHHHHHHHHHHH------CCEEEEECHHHHCCCHHHH
T ss_conf 7699989999888999999999997079---857998779866517999987641------8989982745546997899
Q ss_pred HHHHHHHHCC--CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9889885105--656079998526543113--566765431121014664420013588988754302566756799999
Q gi|254780804|r 99 DCLEEIIIKN--ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 (352)
Q Consensus 99 ~~l~~~~~~~--~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 174 (352)
T Consensus 117 e~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~ 196 (235)
T PRK08084 117 MAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLL 196 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999848966999679882430231288999995697278559998999999999999739999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHH
Q ss_conf 62001235568999999751034-44348888877531
Q gi|254780804|r 175 ANLGGDRIASRNELQKLSSYCLE-DILITEQHVKDIIC 211 (352)
Q Consensus 175 ~~~g~d~~~l~~EleKL~ly~~~-~~~It~~dI~~~v~ 211 (352)
T Consensus 197 ~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vkevL~ 234 (235)
T PRK08084 197 KRLDREMRTLFMTLDQLDKASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 86158899999999999999998199999999999965