HHsearch alignment for GI: 254780804 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=98.76 E-value=2.3e-05 Score=54.52 Aligned_cols=212 Identities=14% Similarity=0.091 Sum_probs=130.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------------CCCEEEE----EEH
Q ss_conf 875321001013847999569965899999999997335666------------------------7730776----208
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------------DPFSLVV----LNA 60 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------------~~~~~~~----~~~ 60 (352)
T Consensus 35 L~~a~~~g-Rl~H-A~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~~i~r~~d~ 112 (352)
T PRK09112 35 LAQAYREG-RLHH-ALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLLHLTRPFDE 112 (352)
T ss_pred HHHHHHCC-CCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCH
T ss_conf 99999849-9652-465358998089999999999986699866686556788878778999974899995655343220
Q ss_pred HH------H-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 89------6-4189999998717888888239998477410-45789889885105656079998526543113566765
Q gi|254780804|r 61 LE------I-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 (352)
Q Consensus 61 ~e------~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e 132 (352)
T Consensus 113 k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~------ll~ 186 (352)
T PRK09112 113 KTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGR------LLP 186 (352)
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH------CHH
T ss_conf 21454335777999999998454886688069998187874699999999985348987489988699777------768
Q ss_pred H-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 4-311210146644200135889887543025667567999996200123556899999975103444348888877531
Q gi|254780804|r 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 133 ~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
T Consensus 187 TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~A------l~L~~~~gl~i-~~~~~~ll~ 258 (352)
T PRK09112 187 TIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKA------LLLLNYGGLEI-IDTVDQLLA 258 (352)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHH------HHHHCCCHHHH-HHHHHHHHH
T ss_conf 999743321488939899999999875126899-8799999998708998899------98744877999-999999980
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01221---114678887641023699999
Q gi|254780804|r 212 DTHVL---YIEEIINATIQGKIYNAIMLA 237 (352)
Q Consensus 212 ~~~~~---~if~L~dai~~~~~~~a~~~l 237 (352)
T Consensus 259 ~-p~~d~~~~~~la~~~~~~~~~~~~~~~ 286 (352)
T PRK09112 259 G-SGFDLPKAHALAGALSGRESEVQFDLF 286 (352)
T ss_pred C-CCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8-999989999999998477747899999