HHsearch alignment for GI: 254780804 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.72 E-value=4e-14 Score=112.57 Aligned_cols=280 Identities=15% Similarity=0.125 Sum_probs=194.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEE------------------EHH-HH--
Q ss_conf 8753210010138479995699658999999999973356667----7307762------------------088-96--
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVL------------------NAL-EI-- 63 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----~~~~~~~------------------~~~-e~-- 63 (352)
T Consensus 26 ~L~~~~~~~~~ph--lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~ 103 (337)
T PRK12402 26 HLSALAASGNLPH--LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYK 103 (337)
T ss_pred HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCC
T ss_conf 9999997799876--98889298489999999999967997567833311653113564001016642344201533277
Q ss_pred --HCCHHHHH-HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf --41899999-9871788888823999847741-0457898898851056560799985265431135667654311210
Q gi|254780804|r 64 --QKNISTFW-NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 (352)
Q Consensus 64 --~~d~~~l~-~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~ 139 (352)
T Consensus 104 ~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~---ii~tI--~SRC~~ 178 (337)
T PRK12402 104 SVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSK---LIPPI--RSRCLP 178 (337)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCHHH--HHHCEE
T ss_conf 3789999999998614887788049997071317999999999887408876699872386444---75247--762445
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 14664420013588988754302566756799999620012355689999997510344434888887753101221114
Q gi|254780804|r 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 (352)
Q Consensus 140 v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if 219 (352)
T Consensus 179 i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~--~~~~~~~~~~~~~~~~~~~~~i~ 256 (337)
T PRK12402 179 LFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEA--EGEVTTEAALEELSDTGTDETVE 256 (337)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 4358989999999999999984999899999999998699899999999999872--79977188999987789799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 6788876410236999999985-311000145899999999999999983025689899998608999976899999998
Q gi|254780804|r 220 EIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 (352)
Q Consensus 220 ~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~ 298 (352)
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~--------------------------------------- 297 (337)
T PRK12402 257 EALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVAR--------------------------------------- 297 (337)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------------------
T ss_conf 99999984899999999999887559999999999999998---------------------------------------
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 649989999999999999999532899989999999999
Q gi|254780804|r 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 (352)
Q Consensus 299 ~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~ 337 (352)
T Consensus 298 ~~~~~~~~~~i~~~~a~~e~rl~~-g~~~~lqL~a~la~ 335 (337)
T PRK12402 298 RGYSEYNVAELATLAADADARLTD-AANERIQLNALLAE 335 (337)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 747868999999999999988751-79999999999984