HHsearch alignment for GI: 254780804 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.44 E-value=6.1e-10 Score=84.85 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH-HHCCHHHHHHHHHCCCCCCCCE
Q ss_conf 378875321001013847999569965899999999997335666773077620889-6418999999871788888823
Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEINSTSLFSKKK 84 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e-~~~d~~~l~~~~~t~slF~~~k 84 (352)
T Consensus 24 ~~~~L~~~i~~~~~~s--~Il~GPPG~GKTTlA~iiA~~~~~------~f~~lnA~~~gv~dir~ii~~a~~-~~~~~~t 94 (417)
T PRK13342 24 PGKPLRRMIEAGRLSS--MILWGPPGTGKTTLARIIAGATDA------EFEALSAVTSGVKDLREVIEEAKQ-SRLGRRT 94 (417)
T ss_pred CCHHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEEECCCCCHHHHHHHHHHHHH-HHCCCCE
T ss_conf 9719999997699975--998896999899999999998689------889961410388999999999886-3148965
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 999847741-0457898898851056560799985265431135667654311210146644200135889887543---
Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI--- 160 (352)
Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~--- 160 (352)
T Consensus 95 ilfiDEIHRfnK~QQD~LLp~vE~---g~iiLIgATTENP~f~in~aL--lSRc~vf~l~~L~~~di~~iL~ral~~e~~ 169 (417)
T PRK13342 95 ILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL--LSRAQVFELKPLSEEDLEQLLKRALEDERG 169 (417)
T ss_pred EEEEECHHHCCHHHHHHHHHHHHC---CCEEEEEECCCCCHHHCCHHH--HHHHHHEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999978200588999999875112---656999741579225348989--856570020589999999999999987743
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC------C----CHHHHHHHHHHH
Q ss_conf --0256675679999962001235568999999751034443488888775310122------1----114678887641
Q gi|254780804|r 161 --GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV------L----YIEEIINATIQG 228 (352)
Q Consensus 161 --~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~------~----~if~L~dai~~~ 228 (352)
T Consensus 170 ~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGS 249 (417)
T PRK13342 170 LGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQRRAARYDKDGDEHYDLISALHKSIRGS 249 (417)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 37887769999999998149859999999999985258997348999999984410357778634789999999985169
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999
Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352)
Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352)
T Consensus 250 DpdAAlyyLarml~~GEDp~~Ia-------RRLii~AsE-DIGlAdP~al~~----------a~~a~~a~~~iG~PE~~i 311 (417)
T PRK13342 250 DPDAALYYLARMLEAGEDPLFIA-------RRLVIIASE-DIGLADPNALQV----------AVAAADAVERLGMPEGRI 311 (417)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHH-HHCCCCHHHHHH----------HHHHHHHHHHHCCHHHHH
T ss_conf 95489999999997599979999-------999998854-403678789999----------999999999858778899
Q ss_pred HHH
Q ss_conf 999
Q gi|254780804|r 309 TLH 311 (352)
Q Consensus 309 ~l~ 311 (352)
T Consensus 312 ~La 314 (417)
T PRK13342 312 ALA 314 (417)
T ss_pred HHH
T ss_conf 999