>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.

Probab=100.00 E-value=3.2e-36 Score=259.05 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=285.2 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH--HHH- Q ss_conf 84799956996589999999999733566677307762088964189999998717888888239998477410--457- Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE--KKV- 97 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~--k~~- 97 (352) T Consensus 2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 78 (331) T TIGR01128 2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDEFNLFTIDGEEF--DWGQLLESAQTLPLFSERRLVELRLPSGLPGAKGK 78 (331) T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHH T ss_conf 64035406405578999999998740-2420122321033200--37788877641355444405665333343441002 Q ss_pred ----HHHHHHHHHCCCCCEEEEEEEC--CCCCCHHHHHHHH-HHH--HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHH Q ss_conf ----8988988510565607999852--6543113566765-431--121014664420013588988754302566756 Q gi|254780804|r 98 ----LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE-KFT--SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 (352) Q Consensus 98 ----~~~l~~~~~~~~~~~~li~~a~--~l~k~~kl~k~~e-~~~--~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 168 (352) T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (331) T TIGR01128 79 LEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKTPDEQELPRWIQARLKELGLRIDPD 158 (331) T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHH T ss_conf 56679999987314676537887416301345677776766654321012310234435566899999999707865458 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 79999962001235568999999751034443488888775310122111467888764102369999999853110001 Q gi|254780804|r 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 (352) Q Consensus 169 a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~ 248 (352) T Consensus 159 a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a~~~~~~~~~~~~l~~l~~~~~~~~ 238 (331) T TIGR01128 159 AVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILDGLLGEGEEPL 238 (331) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH T ss_conf 99999987253078888777777752378766688999988533114667889998860438999999998874041157 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCC Q ss_conf 458999999999999999830256--8989999860899997689999999864998999999999999999953-2899 Q gi|254780804|r 249 ALLHGFLQKFQLLEKIHIIKECSN--ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 (352) Q Consensus 249 ~il~~L~~~f~~L~~~~~~~~~~g--~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K-~~~~ 325 (352) T Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~k~~~~~ 317 (331) T TIGR01128 239 ILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLG-PIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGLG 317 (331) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 8999999999999998887763002210889998733-655035677899985057788999999999989985024565 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 98999999999999 Q gi|254780804|r 326 LEKNIIFQTILYIA 339 (352) Q Consensus 326 ~~~~il~~~ll~l~ 339 (352) T Consensus 318 ~~~~~l~~l~~~~~ 331 (331) T TIGR01128 318 DPWLELELLLLKLA 331 (331) T ss_pred CHHHHHHHHHHHCC T ss_conf 25789999876309

HHsearch alignment for GI: 254780804 and conserved domain: TIGR01128