HHsearch alignment for GI: 254780804 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.91 E-value=6.5e-21 Score=157.59 Aligned_cols=316 Identities=14% Similarity=0.167 Sum_probs=249.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH--CCCCCCCC---------------EEEEEEHHH--HHCCHHHH
Q ss_conf 753210010138479995699658999999999973--35666773---------------077620889--64189999
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPF---------------SLVVLNALE--IQKNISTF 70 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~--~~~~~~~~---------------~~~~~~~~e--~~~d~~~l 70 (352)
T Consensus 26 L~NAi~~~ri~H-AYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l 104 (363)
T TIGR02397 26 LKNAIKNGRIAH-AYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREL 104 (363)
T ss_pred HHHHHHHCCCCC-EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 999997189662-3450285997635589999998658878778777750227765289866688648656878899999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99871788888823999847741-04578988988510565607999852654311356676543112101466442001
Q gi|254780804|r 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 (352)
Q Consensus 71 ~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~ 149 (352)
T Consensus 105 ~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~K---iP~TI--lSRCQrF~Fk~i~~~~ 179 (363)
T TIGR02397 105 RENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK---IPATI--LSRCQRFDFKRIPLED 179 (363)
T ss_pred HHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH---CCCCC--EEECEEECCCCCCHHH
T ss_conf 873036875544335887323028656899987652279876288873487112---05540--2100031267899899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-
Q ss_conf 358898875430256675679999962001235568999999751034-443488888775310122111467888764-
Q gi|254780804|r 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-DILITEQHVKDIICDTHVLYIEEIINATIQ- 227 (352)
Q Consensus 150 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~-~~~It~~dI~~~v~~~~~~~if~L~dai~~- 227 (352)
T Consensus 180 i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~~~l~~l~~~~~~~ 259 (363)
T TIGR02397 180 IVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDEEKLIELLEAILNK 259 (363)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99999999987088317789999999628961068899999998268878865789999983577789999999997538
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999
Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352)
Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352)
T Consensus 260 ~d~~~~l~~~~~~~~~G~~~~~f~~~l~~~~~~~~~~~~~~~-~~-~~~~ll~-----~~~~~~~~~~~~~~~~~~~~~~ 332 (363)
T TIGR02397 260 RDTEEALKILDEILESGVDPEKFLEDLIEFLRDLLLIKKTPD-EI-EASNLLE-----ILESEQEFLKELAQKLSLEFLL 332 (363)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-CH-HHHHHHH-----HHHHHHHHHHHHHHHCCHHHHH
T ss_conf 768899999999987288898999999999999886440465-20-1224432-----2257888999999616978999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999953289998999999999999
Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
T Consensus 333 ~~~~~l~~~~~~~~~-~~~~~~~lE~~l~~~~ 363 (363)
T TIGR02397 333 RLIDILLEALKDLKF-SNNPRIALEMTLLRLL 363 (363)
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHC
T ss_conf 999999877873200-0015899999999849