Query gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 352 No_of_seqs 150 out of 1917 Neff 8.6 Searched_HMMs 39220 Date Sun May 29 18:14:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780804.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK06585 holA DNA polymerase I 100.0 0 0 471.1 37.1 342 1-346 1-342 (343) 2 PRK07452 DNA polymerase III su 100.0 0 0 383.6 33.6 317 22-342 2-325 (326) 3 PRK05574 holA DNA polymerase I 100.0 0 0 381.5 34.6 326 4-339 2-335 (336) 4 PRK05629 hypothetical protein; 100.0 0 0 354.6 33.0 313 21-344 16-331 (331) 5 COG1466 HolA DNA polymerase II 100.0 0 0 335.3 33.5 329 4-341 1-332 (334) 6 PRK07914 hypothetical protein; 100.0 2.8E-45 0 318.6 33.3 313 20-344 4-319 (320) 7 PRK08487 DNA polymerase III su 100.0 2.8E-45 0 318.7 30.4 322 5-341 2-325 (328) 8 TIGR01128 holA DNA polymerase 100.0 3.2E-36 8E-41 259.0 28.1 315 21-339 2-331 (331) 9 pfam06144 DNA_pol3_delta DNA p 100.0 6.9E-28 1.7E-32 203.8 15.7 166 24-193 1-172 (172) 10 PRK05563 DNA polymerase III su 99.9 4E-22 1E-26 165.6 28.9 314 10-342 28-362 (541) 11 PRK06647 DNA polymerase III su 99.9 2.4E-21 6.2E-26 160.4 27.6 313 9-343 27-360 (560) 12 PRK06305 DNA polymerase III su 99.9 4.5E-21 1.2E-25 158.6 28.7 302 11-345 30-353 (462) 13 TIGR02397 dnaX_nterm DNA polym 99.9 6.5E-21 1.7E-25 157.6 25.5 316 10-339 26-363 (363) 14 PRK06674 DNA polymerase III su 99.9 1.5E-20 3.9E-25 155.1 27.3 317 9-345 27-364 (563) 15 PRK07270 DNA polymerase III su 99.9 3.6E-20 9.3E-25 152.6 26.8 310 8-343 25-355 (557) 16 PRK05907 hypothetical protein; 99.9 5.1E-20 1.3E-24 151.6 24.0 304 1-339 1-309 (311) 17 PRK07764 DNA polymerase III su 99.8 4.8E-17 1.2E-21 131.9 28.4 315 9-339 26-363 (775) 18 PRK09111 DNA polymerase III su 99.8 9.6E-17 2.5E-21 129.9 29.6 309 15-342 40-374 (600) 19 PRK06645 DNA polymerase III su 99.8 1.3E-16 3.4E-21 129.0 27.8 309 16-343 39-373 (507) 20 COG2812 DnaX DNA polymerase II 99.8 2.1E-16 5.3E-21 127.7 25.5 314 9-342 27-361 (515) 21 PRK08451 DNA polymerase III su 99.8 1E-15 2.6E-20 123.2 25.8 242 10-261 26-288 (523) 22 PRK05896 DNA polymerase III su 99.8 7.2E-16 1.8E-20 124.1 21.9 249 9-265 27-296 (613) 23 PRK00440 rfc replication facto 99.7 3.1E-14 7.8E-19 113.4 26.1 285 10-344 28-318 (318) 24 PRK12323 DNA polymerase III su 99.7 1E-13 2.6E-18 109.9 28.2 308 10-339 28-361 (721) 25 PRK07133 DNA polymerase III su 99.7 8.3E-14 2.1E-18 110.5 27.5 303 16-342 36-356 (718) 26 PRK12402 replication factor C 99.7 4E-14 1E-18 112.6 25.5 280 9-337 26-335 (337) 27 PRK08691 DNA polymerase III su 99.7 2.4E-13 6.2E-18 107.4 26.8 308 10-339 28-356 (704) 28 PRK07003 DNA polymerase III su 99.7 8.1E-13 2.1E-17 103.9 26.9 303 15-339 33-356 (816) 29 PRK05648 DNA polymerase III su 99.7 1.2E-12 3E-17 102.8 27.0 303 15-339 33-356 (705) 30 PRK07994 DNA polymerase III su 99.7 2.4E-12 6E-17 100.9 27.7 308 11-339 29-357 (643) 31 PRK08853 DNA polymerase III su 99.7 1.3E-12 3.2E-17 102.7 26.3 301 17-339 35-356 (717) 32 PRK06872 DNA polymerase III su 99.6 9E-12 2.3E-16 97.0 27.2 303 12-340 30-353 (696) 33 PRK05564 DNA polymerase III su 99.6 6.2E-12 1.6E-16 98.1 26.0 290 9-340 15-312 (313) 34 PRK08770 DNA polymerase III su 99.6 1.8E-11 4.5E-16 95.1 27.2 302 14-339 32-354 (663) 35 KOG0989 consensus 99.5 3.3E-11 8.3E-16 93.3 23.7 275 21-321 57-345 (346) 36 PRK13342 recombination factor 99.4 6.1E-10 1.6E-14 84.8 24.2 274 6-311 24-314 (417) 37 PRK04195 replication factor C 99.4 2.9E-10 7.5E-15 87.0 22.3 200 21-238 40-251 (403) 38 PRK08058 DNA polymerase III su 99.4 7.6E-09 1.9E-13 77.6 27.4 287 7-339 15-327 (329) 39 PRK07940 DNA polymerase III su 99.4 2.5E-09 6.4E-14 80.8 23.3 296 19-340 38-394 (395) 40 PRK05707 DNA polymerase III su 99.3 1.2E-08 3.2E-13 76.2 24.2 297 1-341 1-324 (328) 41 pfam12169 DNA_pol3_gamma3 DNA 99.2 1.8E-09 4.7E-14 81.7 14.2 132 201-343 1-132 (143) 42 PRK06871 DNA polymerase III su 99.1 7.9E-07 2E-11 64.3 24.9 284 9-340 13-320 (324) 43 PRK13341 recombination factor 99.1 2.6E-07 6.7E-12 67.4 21.3 275 5-310 38-336 (726) 44 PRK07993 DNA polymerase III su 99.1 1.6E-06 4E-11 62.3 25.1 287 7-342 12-323 (334) 45 PRK08699 DNA polymerase III su 99.0 2.7E-06 6.9E-11 60.7 25.3 273 18-344 19-323 (325) 46 PRK06964 DNA polymerase III su 99.0 4.7E-06 1.2E-10 59.1 24.0 269 18-340 19-339 (342) 47 PRK07471 DNA polymerase III su 98.9 6.1E-06 1.5E-10 58.4 25.3 294 9-343 28-363 (363) 48 COG2256 MGS1 ATPase related to 98.8 1.6E-06 4E-11 62.3 16.5 235 24-276 51-303 (436) 49 PRK04132 replication factor C 98.8 2.7E-07 7E-12 67.3 12.4 198 98-343 662-861 (863) 50 PRK09112 DNA polymerase III su 98.8 2.3E-05 5.9E-10 54.5 21.9 212 9-237 35-286 (352) 51 PRK07399 DNA polymerase III su 98.7 7.8E-06 2E-10 57.7 18.8 262 7-341 13-313 (314) 52 PRK05917 DNA polymerase III su 98.7 1.2E-05 3.1E-10 56.4 19.4 260 6-345 5-280 (290) 53 PRK08769 DNA polymerase III su 98.6 7.8E-05 2E-09 51.0 20.9 165 9-186 16-207 (319) 54 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.2E-05 3.1E-10 56.4 16.0 180 23-211 40-226 (226) 55 PRK06893 DNA replication initi 98.6 2.1E-05 5.3E-10 54.8 17.1 181 21-211 39-228 (229) 56 KOG0991 consensus 98.5 1.2E-05 3E-10 56.4 15.5 238 11-261 40-285 (333) 57 TIGR00678 holB DNA polymerase 98.5 2.4E-06 6.1E-11 61.0 10.8 165 9-182 4-214 (216) 58 PRK05642 DNA replication initi 98.5 2.6E-05 6.6E-10 54.2 16.0 182 21-211 45-233 (234) 59 PRK06090 DNA polymerase III su 98.4 0.00018 4.6E-09 48.6 23.2 281 8-343 14-318 (319) 60 PRK08084 DNA replication initi 98.4 5.8E-05 1.5E-09 51.9 16.3 181 22-211 46-234 (235) 61 PRK07276 DNA polymerase III su 98.4 0.0002 5.1E-09 48.3 18.9 157 7-178 11-189 (290) 62 PRK05818 DNA polymerase III su 98.4 4.6E-05 1.2E-09 52.5 14.7 181 67-254 73-259 (262) 63 COG0593 DnaA ATPase involved i 98.4 0.00017 4.2E-09 48.8 17.4 203 20-227 112-331 (408) 64 PRK00149 dnaA chromosomal repl 98.4 0.0003 7.7E-09 47.1 20.9 202 21-227 146-365 (447) 65 PRK08727 hypothetical protein; 98.3 0.00018 4.6E-09 48.6 16.0 183 23-214 43-232 (233) 66 pfam00308 Bac_DnaA Bacterial d 98.3 2.7E-05 6.9E-10 54.1 11.7 169 23-195 36-216 (219) 67 PRK08903 hypothetical protein; 98.2 0.00013 3.3E-09 49.5 14.3 180 21-213 42-226 (227) 68 COG0470 HolB ATPase involved i 98.2 0.00055 1.4E-08 45.4 16.5 159 19-194 23-206 (325) 69 PRK12422 chromosomal replicati 98.1 0.0011 2.8E-08 43.4 22.1 200 21-227 142-363 (455) 70 PRK07132 DNA polymerase III su 98.0 0.0005 1.3E-08 45.7 14.4 161 6-178 6-178 (303) 71 PRK09087 hypothetical protein; 97.9 0.0012 3.1E-08 43.1 13.9 188 6-214 32-223 (226) 72 KOG2028 consensus 97.9 0.0026 6.6E-08 41.0 16.2 239 9-257 152-422 (554) 73 PRK06620 hypothetical protein; 97.8 0.0017 4.2E-08 42.2 12.8 184 6-211 27-214 (214) 74 pfam05496 RuvB_N Holliday junc 97.6 0.0032 8.3E-08 40.3 12.3 164 19-197 50-231 (234) 75 KOG0990 consensus 97.4 0.012 3E-07 36.6 14.0 221 16-243 59-290 (360) 76 KOG2035 consensus 97.1 0.025 6.4E-07 34.4 12.3 227 22-258 35-299 (351) 77 KOG1969 consensus 96.9 0.034 8.8E-07 33.5 15.5 196 22-227 327-553 (877) 78 pfam05673 DUF815 Protein of un 96.9 0.037 9.5E-07 33.3 15.1 160 24-190 56-243 (248) 79 PRK06581 DNA polymerase III su 96.9 0.0092 2.3E-07 37.3 8.3 112 9-121 4-129 (263) 80 TIGR02903 spore_lon_C ATP-depe 96.4 0.08 2E-06 31.1 12.0 200 8-215 166-433 (616) 81 PRK00411 cdc6 cell division co 96.4 0.082 2.1E-06 31.0 18.2 208 9-220 45-289 (394) 82 pfam03215 Rad17 Rad17 cell cyc 95.3 0.23 5.8E-06 28.1 13.1 173 21-193 45-260 (490) 83 TIGR03015 pepcterm_ATPase puta 94.9 0.29 7.5E-06 27.3 15.6 133 80-212 121-265 (269) 84 pfam01637 Arch_ATPase Archaeal 94.8 0.32 8.1E-06 27.1 12.7 155 21-185 20-221 (223) 85 COG2607 Predicted ATPase (AAA+ 94.6 0.36 9.1E-06 26.8 11.5 161 24-192 88-278 (287) 86 PTZ00112 origin recognition co 94.5 0.36 9.2E-06 26.7 16.6 209 7-218 280-518 (650) 87 KOG1970 consensus 94.3 0.42 1.1E-05 26.3 10.9 217 19-239 108-371 (634) 88 PRK11361 acetoacetate metaboli 92.6 0.77 2E-05 24.6 16.9 250 20-302 165-455 (457) 89 pfam12213 Dpoe2NT DNA polymera 90.6 0.66 1.7E-05 25.0 5.2 62 148-210 3-65 (72) 90 smart00803 TAF TATA box bindin 87.8 2 5E-05 21.9 6.3 58 152-210 6-64 (65) 91 COG1224 TIP49 DNA helicase TIP 85.7 1.9 4.8E-05 22.0 4.9 104 192-312 258-372 (450) 92 TIGR02902 spore_lonB ATP-depen 85.4 2.1 5.3E-05 21.7 5.0 178 24-217 89-335 (532) 93 PRK10365 transcriptional regul 83.3 3.2 8.2E-05 20.5 12.9 186 20-211 161-387 (441) 94 pfam02969 TAF TATA box binding 82.5 3.4 8.8E-05 20.3 6.3 57 153-210 8-65 (66) 95 KOG1942 consensus 82.4 2 5.2E-05 21.8 3.9 58 196-253 267-332 (456) 96 CHL00195 ycf46 Ycf46; Provisio 81.0 3.9 9.9E-05 19.9 17.6 188 9-211 3-206 (491) 97 PRK10923 glnG nitrogen regulat 80.5 4 0.0001 19.8 18.1 254 20-285 160-455 (469) 98 KOG0743 consensus 77.5 4.9 0.00013 19.2 5.1 26 186-211 275-300 (457) 99 TIGR01752 flav_long flavodoxin 75.8 3.6 9.1E-05 20.2 3.5 132 23-159 2-173 (176) 100 pfam08542 Rep_fac_C Replicatio 73.5 6.3 0.00016 18.5 4.3 75 215-328 5-80 (90) 101 PRK00080 ruvB Holliday junctio 73.2 6.4 0.00016 18.5 14.1 176 19-211 51-248 (328) 102 pfam06068 TIP49 TIP49 C-termin 72.5 5.8 0.00015 18.8 3.9 111 190-317 240-361 (395) 103 KOG1968 consensus 70.9 7.2 0.00018 18.1 7.8 188 25-227 361-571 (871) 104 CHL00181 cbbX CbbX; Provisiona 69.5 7.7 0.0002 17.9 8.9 159 24-193 62-252 (287) 105 TIGR01817 nifA Nif-specific re 69.5 6.2 0.00016 18.6 3.5 74 137-211 377-460 (574) 106 TIGR03346 chaperone_ClpB ATP-d 68.6 8 0.0002 17.8 12.3 53 126-178 313-373 (852) 107 pfam02607 B12-binding_2 B12 bi 66.0 7.3 0.00019 18.1 3.3 36 218-253 4-39 (78) 108 PRK08485 DNA polymerase III su 58.3 12 0.00031 16.6 11.3 39 81-120 53-92 (204) 109 PRK12359 flavodoxin FldB; Prov 58.1 12 0.00032 16.6 5.0 66 23-89 3-86 (169) 110 CHL00095 clpC Clp protease ATP 54.7 14 0.00036 16.2 10.4 141 27-177 206-377 (823) 111 KOG2549 consensus 53.3 15 0.00038 16.1 6.2 14 211-224 304-317 (576) 112 TIGR02370 pyl_corrinoid methyl 52.4 8.5 0.00022 17.7 1.7 31 221-251 2-32 (201) 113 TIGR02881 spore_V_K stage V sp 52.1 15 0.00039 15.9 8.9 93 95-190 127-233 (261) 114 PRK09267 flavodoxin FldA; Vali 51.2 16 0.0004 15.9 4.7 67 22-89 3-87 (169) 115 TIGR00635 ruvB Holliday juncti 50.5 16 0.00042 15.8 5.7 186 19-223 30-240 (305) 116 COG3829 RocR Transcriptional r 49.3 17 0.00043 15.7 5.1 182 19-207 266-491 (560) 117 PRK03992 proteasome-activating 48.1 18 0.00045 15.5 13.3 21 292-312 328-348 (390) 118 PRK10865 protein disaggregatio 47.5 18 0.00046 15.5 11.9 75 97-177 295-377 (857) 119 PRK10820 DNA-binding transcrip 45.4 19 0.0005 15.3 14.7 184 18-207 224-441 (513) 120 smart00427 H2B Histone H2B. 44.5 20 0.00051 15.2 5.2 60 153-213 6-67 (89) 121 pfam12002 MgsA_C MgsA AAA+ ATP 44.2 20 0.00052 15.1 6.9 65 228-310 2-66 (168) 122 COG1221 PspF Transcriptional r 40.3 23 0.00059 14.8 14.3 172 23-205 103-318 (403) 123 cd02069 methionine_synthase_B1 39.5 24 0.00061 14.7 3.2 40 78-117 48-95 (213) 124 pfam09968 DUF2202 Uncharacteri 37.3 26 0.00066 14.5 5.6 72 184-258 67-138 (162) 125 TIGR03345 VI_ClpV1 type VI sec 37.1 26 0.00066 14.4 11.5 52 126-177 327-386 (852) 126 COG2255 RuvB Holliday junction 34.6 28 0.00072 14.2 6.3 171 24-211 55-249 (332) 127 KOG2170 consensus 33.5 30 0.00075 14.1 3.4 23 95-117 92-114 (344) 128 PRK11608 pspF phage shock prot 31.6 32 0.00081 13.9 19.1 179 20-206 29-250 (325) 129 pfam04743 consensus 30.3 33 0.00085 13.7 3.0 36 158-194 112-147 (160) 130 TIGR02147 Fsuc_second hypothet 29.3 35 0.00088 13.6 11.1 154 148-322 8-178 (281) 131 PRK11388 DNA-binding transcrip 28.7 35 0.0009 13.5 17.4 183 23-211 350-569 (639) 132 COG1223 Predicted ATPase (AAA+ 27.8 37 0.00094 13.4 13.5 20 166-185 181-200 (368) 133 PRK04036 DNA polymerase II sma 27.1 38 0.00096 13.4 5.1 14 182-195 251-264 (497) 134 KOG2680 consensus 26.1 39 0.001 13.2 5.4 62 191-253 254-324 (454) 135 TIGR01854 lipid_A_lpxH UDP-2,3 25.2 41 0.001 13.1 1.6 24 22-48 71-94 (241) 136 KOG2794 consensus 24.1 43 0.0011 13.0 3.3 12 20-31 42-53 (340) 137 TIGR01848 PHA_reg_PhaR polyhyd 23.5 44 0.0011 12.9 3.2 55 199-256 18-78 (109) 138 TIGR01476 chlor_syn_BchG bacte 22.6 35 0.00088 13.6 0.8 34 199-233 188-221 (295) 139 pfam04533 Herpes_U44 Herpes vi 22.5 46 0.0012 12.8 3.5 55 159-214 119-174 (211) 140 COG5095 TAF6 Transcription ini 21.7 48 0.0012 12.7 5.5 35 308-342 394-436 (450) 141 KOG2227 consensus 21.2 49 0.0012 12.6 5.1 180 8-190 164-371 (529) 142 pfam08158 NUC130_3NT NUC130/3N 20.7 50 0.0013 12.6 2.9 38 139-176 5-42 (52) 143 TIGR01818 ntrC nitrogen regula 20.2 51 0.0013 12.5 9.3 250 22-284 159-459 (471) 144 pfam08319 consensus 20.1 51 0.0013 12.5 2.7 79 96-174 51-139 (305) No 1 >PRK06585 holA DNA polymerase III subunit delta; Reviewed Probab=100.00 E-value=0 Score=471.14 Aligned_cols=342 Identities=25% Similarity=0.384 Sum_probs=327.4 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888 Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352) Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352) |.+|+++++-..+.+.. -...+|||||+|.|++++..+.+.+.+..+.+++|++.+++++|+..|++.|.+++.|.||| T Consensus 1 mmki~~~~~~~f~~~p~-~~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF 79 (343) T PRK06585 1 MMKIKAHEIDRFLARPD-GKIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLF 79 (343) T ss_pred CCCCCHHHHHHHHHCCC-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCC T ss_conf 98767899999981986-47658999638764799999999997255667874157747998833999999998476876 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 88239998477410457898898851056560799985265431135667654311210146644200135889887543 Q gi|254780804|r 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352) Q Consensus 81 ~~~klIii~~~~~~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352) |++|+|+|+++++ +..+.++.++..|++++++|+.++.++++++++|++|+++.+++||||+++..++.+||.+++++ T Consensus 80 ~~~rlI~i~~~~d--~~~~~l~~~l~~~~~~~~lIi~a~~L~k~skLrk~~e~~~~~~~i~cY~d~~~~l~~~i~~~l~~ 157 (343) T PRK06585 80 GGRRLIWVRAGGK--SLAAALKALLAEPPGDAFIVIEAGDLKKGSSLRKLFETAASAAAIPCYADDERDLARLIDDELAK 157 (343) T ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 8984899726872--56999999981789982899973897731189999986478699950069988999999999998 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998 Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352) Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352) +|++|+++|+++|++.+|+|+..+.||||||++|++++++||.+||..+++++.+.++|+++||++.||..++...++++ T Consensus 158 ~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~da~l~G~~~~a~~~l~~l 237 (343) T PRK06585 158 AGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAGFERALDRA 237 (343) T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 29997799999999873427999999999999984899978999999986864102499999999808999999999998 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995 Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352) Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352) ..+|++|+.+++++.+||++|+.++.... +|.+.+++++.++||+||++++.+.+|+++|+..++.+++..|.++|+++ T Consensus 238 ~~~g~~pi~il~~l~~~~~~L~~i~~~~~-~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~~~L~~al~~l~~~E~~~ 316 (343) T PRK06585 238 RAEGTAPVLILRAALRHFQQLHIVRLKVE-NGKSAAQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQQAELDC 316 (343) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 84578779999999999999999999987-03459999986489998466999999998099999999999999999998 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 32899989999999999999631025 Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQTACKNN 346 (352) Q Consensus 321 K~~~~~~~~il~~~ll~l~~~a~~~~ 346 (352) |+++.+++.++++++++||..|+|.+ T Consensus 317 K~~~~~~~~i~~~~ll~ia~~a~~~~ 342 (343) T PRK06585 317 RRNPALAEAIAQRALLSIAVEARRRG 342 (343) T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 66996599999999999999987537 No 2 >PRK07452 DNA polymerase III subunit delta; Validated Probab=100.00 E-value=0 Score=383.60 Aligned_cols=317 Identities=15% Similarity=0.183 Sum_probs=276.8 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCC----CHHHH Q ss_conf 47999569965899999999997335666773077620889641899999987178888882399984774----10457 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS----TEKKV 97 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~----~~k~~ 97 (352) |||||||+|.|++++.++.+++.+..++.++||+.+++|.|. ..+..+++++.|+||||++|+|+|+++. ..++. T Consensus 2 PvYll~GeE~~li~~~~~~i~~~~~~~~~~~fn~~~~dg~e~-~~~~~~l~~a~T~Pf~~~~RlVvvk~a~~~~~~~~~~ 80 (326) T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA-EQAIQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEEL 80 (326) T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC-CHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHH T ss_conf 889998382899999999999960895446762378737554-2599999986278877885599983661002487889 Q ss_pred HHHHHHHHHCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 898898851056560799985-26543113566765431121014-6644200135889887543025667567999996 Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 (352) Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a-~~l~k~~kl~k~~e~~~~~~~v~-~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~ 175 (352) .+.++.|+.+||+++++|+.. ++++++.|++|.+++......+. +.|.+..++.+||+++++++|++|+++|+++|++ T Consensus 81 ~~~l~~~l~~~p~~t~lv~~~~~k~D~R~K~~K~l~k~~~~~ef~~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~Lv~ 160 (326) T PRK07452 81 LAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLPPPWDGEGQKQLVERTAQELGVKLTPEAAELLAE 160 (326) T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 99999986179997599998467632377878999840113454068865799999999999998699989999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 20012355689999997510344-43488888775310122111467888764102369999999853110001458999 Q gi|254780804|r 176 NLGGDRIASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 (352) Q Consensus 176 ~~g~d~~~l~~EleKL~ly~~~~-~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L 254 (352) ++|+|+..+.|||+||++|++++ ++||.+||+.+++ ..+.++|+|+||++.||..+|+.++++|+.+|++|+.|+++| T Consensus 161 ~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~-~~~~~iF~L~dAi~~~~~~~Al~~l~~Ll~~ge~pi~Ila~l 239 (326) T PRK07452 161 AVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVS-NTTQNSLQLADALLQGNTGEALALIDDLLDANEPALRIVATL 239 (326) T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC-CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 8684399999999999986289997068999998827-764409999999986899999999999998799889999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 99999999999983025689899998608999976899999998649989999999999999999532899989999999 Q gi|254780804|r 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQT 334 (352) Q Consensus 255 ~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ 334 (352) ++|||.|+.++.+...|..+..++.+.++.+ ||++...+.+|+++||.++|.+++..|.++|..+|++. ++...++.+ T Consensus 240 ~~q~r~ll~vk~l~~~G~~~~~~ia~~lgi~-~P~r~~~~~~~~~~~s~~~L~~~l~~l~~~D~~iKsG~-~~~~ale~~ 317 (326) T PRK07452 240 TGQFRTWLWVKLLVESGERDVKVIAKAAGIG-NPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGA-NPINAFQDK 317 (326) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHH T ss_conf 9999999999999974897799999982899-82789999999867999999999999999999864799-868999999 Q ss_pred HHHHHHHH Q ss_conf 99999963 Q gi|254780804|r 335 ILYIAQTA 342 (352) Q Consensus 335 ll~l~~~a 342 (352) ++++|+.. T Consensus 318 v~~lc~~~ 325 (326) T PRK07452 318 LIELCQLL 325 (326) T ss_pred HHHHHHHC T ss_conf 99996043 No 3 >PRK05574 holA DNA polymerase III subunit delta; Reviewed Probab=100.00 E-value=0 Score=381.51 Aligned_cols=326 Identities=16% Similarity=0.240 Sum_probs=293.2 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC Q ss_conf 33378875321001013847999569965899999999997335666773077620889641899999987178888882 Q gi|254780804|r 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 (352) Q Consensus 4 i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352) |++.++.+.+.+++ .+||||||+|.|++++..+.+++++..++.+++++.++||.+. +++.+.++++|+||||++ T Consensus 2 ~~~~~l~~~lkk~l---~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~--~~~~l~~~~~t~slf~~k 76 (336) T PRK05574 2 LAPEQLEAHLKKGL---APVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSET--DWDDVLEACQSLPLFSDR 76 (336) T ss_pred CCHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CHHHHHHHHCCCCCCCCC T ss_conf 89899999982789---8679998586999999999999986077865305899716869--999999986489977897 Q ss_pred EEEEEECCCCH-----HHHHHHHHHHHHCCCCCEEEEEEE--CCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHH Q ss_conf 39998477410-----457898898851056560799985--265431135667654-3112101466442001358898 Q gi|254780804|r 84 KIILIENLSTE-----KKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIE 155 (352) Q Consensus 84 klIii~~~~~~-----k~~~~~l~~~~~~~~~~~~li~~a--~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~ 155 (352) |+|+|++.... .+..+.+..|+.+|++++++++.. ++++++.+..+++.. .+.+.+++|++++.+++..||+ T Consensus 77 rlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~ 156 (336) T PRK05574 77 KLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQ 156 (336) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHH T ss_conf 59999888766531137999999998707999976999987786336888899999998480799806999899999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 87543025667567999996200123556899999975103444348888877531012211146788876410236999 Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 (352) Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~ 235 (352) ++++++|++|+++|+++|++++|+|+..+.||++||++|+++ ++||.+||+.+++.+.+.++|+|+||++.||..+|+. T Consensus 157 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~-~~It~~dV~~~v~~~~~~~~f~L~dai~~~~~~~al~ 235 (336) T PRK05574 157 QRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPD-GKITLEDVEEAVPDSARFDVFDLVDAILAGKIARALR 235 (336) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHH T ss_conf 999984999898999999997211399999999999983788-8878999999861643356799999998789999999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99998531100014589999999999999998302568989999860899997689999999864998999999999999 Q gi|254780804|r 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352) Q Consensus 236 ~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352) +++++..+|++|+.|+++|.+||++|+.++.... +|.+..++++.++ +||++++.+.+|+++||..++.+++..|.+ T Consensus 236 ~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~-~g~~~~~i~~~l~--i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~ 312 (336) T PRK05574 236 ILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQ-QGYPLQQLFKELR--VWPYRRKLALRALQRLSLKQLEQAIQLLAE 312 (336) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999997799729999999999999999999987-6999999998839--999999999999972999999999999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999953289998999999999999 Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) +|..+|+ +.++...++.+++.+. T Consensus 313 ~D~~iK~-~~d~~~~lEl~ll~l~ 335 (336) T PRK05574 313 TDRQIKT-DYDKDLWLELFLLSLL 335 (336) T ss_pred HHHHHHC-CCCCCHHHHHHHHHHH T ss_conf 9999718-9995499999999842 No 4 >PRK05629 hypothetical protein; Validated Probab=100.00 E-value=0 Score=354.63 Aligned_cols=313 Identities=14% Similarity=0.137 Sum_probs=279.4 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHH Q ss_conf 847999569965899999999997335--6667730776208896418999999871788888823999847741-0457 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISI--TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKV 97 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~--~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~ 97 (352) -+||||||+|+||+++..+.+...+.. ++.++||+..++++|. ++..+.+ +.++|||+++|+|+|++... .+.. T Consensus 16 pPvYLl~G~E~yLid~a~~~l~~~i~~~~~~~~~~n~~~~~~~e~--~~~~l~~-a~~~~~F~~~RlVvv~~~~~~~~~~ 92 (331) T PRK05629 16 PAVHLVLGEDEFLAERARINIVHDIRSSMASPDSLQVTTLKASEI--TQGELLD-ALSPSLFAEDRVVVLTNMDQAGQDA 92 (331) T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CHHHHHH-HCCCCCCCCCEEEEEECHHHCCHHH T ss_conf 997999717199999999999999986288744622588507879--9999998-7375888882599995725306447 Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 89889885105656079998526543113566765431121014664420013588988754302566756799999620 Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 (352) Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~ 177 (352) .+.+..|+.+|+++|++|+.....+++++++|.+.+. +..++|.++.++++..||.++++++|++|+++|+++|++.+ T Consensus 93 ~d~ll~y~~~p~p~t~LV~~~~~~dkrkkl~k~l~k~--g~v~e~~~l~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~ 170 (331) T PRK05629 93 VDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKLEKV--AVVHDAAKLKDRDRPGWVKQEFKNHKVQVTPDVIHALLEGV 170 (331) T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9999998419999649999845875106799998607--46986688999999999999999869997999999999996 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 01235568999999751034443488888775310122111467888764102369999999853110001458999999 Q gi|254780804|r 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 (352) Q Consensus 178 g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~ 257 (352) |+|+..+.+||+||..+. .+.||.++|+.+++.+.+.++|+|+||+..||..+|+..++.++..|++|+.|+.+|.++ T Consensus 171 G~DL~~l~~El~KL~~~~--~g~It~e~V~~~~~~~~e~~~F~l~dai~~~~~~~Al~~l~~ll~~g~~Pv~i~a~L~~~ 248 (331) T PRK05629 171 GSDLRELASAVSQLVEDT--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQVSKAVASTRRALQLGTSPVALAAALSMK 248 (331) T ss_pred CCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 804999999999984077--998589999998269733528679999986688999999999997599929999999999 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99999999983025689899998608999976899999998649989999999999999999532899989999999999 Q gi|254780804|r 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 (352) Q Consensus 258 f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~ 337 (352) ||++.++... .++.+..++.+.++ ++|+..+.+..|+|+||.++|.+++..|.++|..+|+++.+++..++.++++ T Consensus 249 ~r~l~~~~~~--~~~~~~~~iA~~Lg--v~P~~vkk~~~qar~~s~~~L~~a~~~l~~~D~~~Kgg~~dp~~alE~~i~~ 324 (331) T PRK05629 249 VGQIARLYST--RGRINGFELAKELG--MPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQSGDPEFAIESAVRR 324 (331) T ss_pred HHHHHHHHHH--HCCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9999999975--16999899998839--9989999999998269999999999999999998207889888999999999 Q ss_pred HHHHHHC Q ss_conf 9996310 Q gi|254780804|r 338 IAQTACK 344 (352) Q Consensus 338 l~~~a~~ 344 (352) +|+.++| T Consensus 325 i~~~~~~ 331 (331) T PRK05629 325 VAELARR 331 (331) T ss_pred HHHHHCC T ss_conf 9998269 No 5 >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] Probab=100.00 E-value=0 Score=335.35 Aligned_cols=329 Identities=20% Similarity=0.276 Sum_probs=289.8 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC Q ss_conf 33378875321001013847999569965899999999997335666773077620889641899999987178888882 Q gi|254780804|r 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 (352) Q Consensus 4 i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352) +++.+.-+.+.+.. ..++|++||+|+|++++.++.+.+... +.+.+++...+++.+ .|++.+.+++.|+||||++ T Consensus 1 ~~~~~~~~~l~~~~--~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~lF~~~ 75 (334) T COG1466 1 MYPEELAKHLKKKN--LMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSE--LDWADLLSELESPSLFGEK 75 (334) T ss_pred CCHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCC--CCHHHHHHHHHCCCCCCCC T ss_conf 97378999861478--751899966864689999999999734-315661345436555--6899999886276877888 Q ss_pred EEEEEECCCCH--HHHHHHHHHHHHCCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 39998477410--457898898851056-560799985265431135667654311210146644200135889887543 Q gi|254780804|r 84 KIILIENLSTE--KKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352) Q Consensus 84 klIii~~~~~~--k~~~~~l~~~~~~~~-~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352) |+|++++.... +.....+......+| .++++++.++++++..+.+++++....+..++|++++..++.+||..++++ T Consensus 76 ~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 155 (334) T COG1466 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKE 155 (334) T ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 57998776545664278999998536897868999961887527787898887444734662588778899999999999 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998 Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352) Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352) .|++++++|+++|++.+|+|+..+.||++||++|++++ .||.+||+.+|++..+.++|+++||++.|+..+|+.+++.+ T Consensus 156 ~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l~~L 234 (334) T COG1466 156 LGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDL 234 (334) T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 18988999999999985882999999999998747898-66799999997364557889999999878989999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995 Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352) Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352) +.+|++|+.|++++.+||+.++.++..+. +|.+..+++..++ +|+.+++.+.++.++||.+++.+++..|.++|..+ T Consensus 235 ~~~ge~p~~il~~l~~~f~~~~~l~~~~~-~g~~~~~~~~~l~--~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~~ 311 (334) T COG1466 235 LLEGEEPLKLLAALTRQFRLLLQLKALAE-KGKSLQQAAKSLG--IPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQI 311 (334) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 97699889999999999999999999997-3646999998828--92878899999998759999999999999999998 Q ss_pred HCCCCCHHHHHHHHHHHHHHH Q ss_conf 328999899999999999996 Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQT 341 (352) Q Consensus 321 K~~~~~~~~il~~~ll~l~~~ 341 (352) |++..++...+...++.++.. T Consensus 312 K~~~~d~~~~l~~~l~~~~~~ 332 (334) T COG1466 312 KTGYGDPVWALELFLLRLLEL 332 (334) T ss_pred HCCCCCCCHHHHHHHHHHHHC T ss_conf 457766006899999998542 No 6 >PRK07914 hypothetical protein; Reviewed Probab=100.00 E-value=2.8e-45 Score=318.58 Aligned_cols=313 Identities=11% Similarity=0.146 Sum_probs=271.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCC-CCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHH Q ss_conf 38479995699658999999999973356-667730776208896418999999871788888823999847741-0457 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKV 97 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~-~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~ 97 (352) .-+||||||+|+||.+..+..+....... ...++++.++++.+. ++..+ .++.|+||||++|+|+|++... .+.. T Consensus 4 pAPvyLi~G~E~~L~erav~~~~~~ar~~~~~~d~~~~~l~a~~~--~~~~l-~~~~spSLFae~RlVvv~~~~~~~~~~ 80 (320) T PRK07914 4 PSPLHLVLGDEELLVERAVAAVLRSARKRAGTADVPVDRLRAGDV--STYEL-AELLSPSLFAEERVVVLEAAAEAGKDA 80 (320) T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC--CHHHH-HHHHCCCCCCCCEEEEEECCCCCCHHH T ss_conf 998799970819999999999999998503799843466214668--88899-987186766884499983611026889 Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 898898851056560799985265431135667654311210146644-2001358898875430256675679999962 Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~-~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) .+.+..|+.+|+++++||+......+.+++.+.+.+.+. ..++|.+. ...+...||++.++.+|.+|+++|++.|++. T Consensus 81 ~~~l~~yl~~p~~~t~LV~~h~gg~k~Kkl~~~lkk~ga-~v~~~~~l~k~~e~~~~v~~e~~~~g~~i~~~A~~~Lv~~ 159 (320) T PRK07914 81 VALIESAAADLPAGTVLVVVHSGGGRAKALANQLRKLGA-QVHPCARITKASERADFVRKEFRSLRVKVDDETVTALLDA 159 (320) T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 999999852999980899970587404679999997699-8986556588689999999999985999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 00123556899999975103444348888877531012211146788876410236999999985311000145899999 Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 (352) Q Consensus 177 ~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~ 256 (352) +|+|+..+.+|++||+.+.++ +||.++|+.+++++.+.+.|++.|+++.||..+|+..+..++..|++|+.|+++|.+ T Consensus 160 vG~dl~eLaae~~qL~~d~~g--~It~~~V~~~~~g~~e~~~F~vaDaa~~g~~~~AL~~lr~al~~G~~pv~i~~alA~ 237 (320) T PRK07914 160 VGSDIRELASACSQLVADTGG--AVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVVLADALAE 237 (320) T ss_pred HHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 862399999999999605799--736999999928971220999999998789999999999999749974999999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999998302568989999860899997689999999864998999999999999999953289998999999999 Q gi|254780804|r 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 (352) Q Consensus 257 ~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll 336 (352) ++|.|.+++.. +| +..+..+.++.| |++.+..+.|+++||.+.+.+++..+.++|..+|+++.++...++.+++ T Consensus 238 ~~R~la~v~~~---~~-~~~~~A~~lg~~--Pw~v~ka~~qar~ws~~~l~~ai~~la~~D~~vKg~~~dp~~alE~~v~ 311 (320) T PRK07914 238 AVHTIGRVGPL---SG-DPYRLAGQLGMP--PWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVR 311 (320) T ss_pred HHHHHHHHHHH---CC-CHHHHHHHHCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999998861---39-989999882999--5999999999817999999999999999999854788887889999999 Q ss_pred HHHHHHHC Q ss_conf 99996310 Q gi|254780804|r 337 YIAQTACK 344 (352) Q Consensus 337 ~l~~~a~~ 344 (352) .||..+++ T Consensus 312 ~ia~~~~~ 319 (320) T PRK07914 312 RVAELVAD 319 (320) T ss_pred HHHHHHCC T ss_conf 99998407 No 7 >PRK08487 DNA polymerase III subunit delta; Validated Probab=100.00 E-value=2.8e-45 Score=318.71 Aligned_cols=322 Identities=18% Similarity=0.128 Sum_probs=276.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCE Q ss_conf 33788753210010138479995699658999999999973356667730776208896418999999871788888823 Q gi|254780804|r 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 (352) Q Consensus 5 ~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~k 84 (352) |-.+|=+.++++.. .++||+||+|+|+++.+.+.|.+.+..+.. ... ++.+| .|++.+.+.+.+.||||++| T Consensus 2 yk~e~d~~ik~~~~--~~~ylLyG~d~fli~~y~~~I~~~~~~~~~--~~~--~yfdE--~d~~~i~~~l~~~sLFg~~k 73 (328) T PRK08487 2 YKKELDTLLKQNKL--PNAFFLYGEDEFQIEYYAKEISSKFKPEEL--LKE--LYFDE--YNFSQAKDFLSQGSLFGGKN 73 (328) T ss_pred CHHHHHHHHHCCCC--CCEEEEECCCHHHHHHHHHHHHHHHCCCCH--HHH--CCCCC--CCHHHHHHHHHCCCCCCCCE T ss_conf 76899999865988--845999568575899999999998577521--120--02265--78899999973515347774 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 999847741-0457898898851056560799985265431135667654311210146644200135889887543025 Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 (352) Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 163 (352) +|+|++... .++..+.|..++++||+++++|+.++...++++.++.++....+++|+|++++.+++..|+++++++.|+ T Consensus 74 lv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~~~~k~~~~~~~~~~V~ff~p~~~el~~~i~~~ak~~g~ 153 (328) T PRK08487 74 LLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSSDTEKIFTPKFIAKFVRFFKPNAWEALKLLQERAKELGL 153 (328) T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 79995777455226999999862897778999970613345678887766336237751399868999999999999199 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66756799999620012355689999997510344434888887753101221114678887641023699999998531 Q gi|254780804|r 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 (352) Q Consensus 164 ~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~ 243 (352) +|+++|+.+|++.+|+|+..+.||||||++| +++||.+||+.++++.++.++|+++++++.++... ..+..++.+ T Consensus 154 ~Is~~al~~L~e~~g~dL~~~~nELeKL~l~---~~~It~edI~~l~~~~~~~~~~el~~~l~~kk~~~--~~l~~lle~ 228 (328) T PRK08487 154 DIDQNALNHLFEIQNENLYLAANELEKLAIL---DAPITLKDIDRLVFGLGSVSFEDLFLKLLKKKDIK--DDLFKLLEE 228 (328) T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHC T ss_conf 7799999999998596399999899999853---78788999999855766677999999997537289--999999975 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 10001458999999999999999830256898999986089999768999999986499899999999999999995328 Q gi|254780804|r 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 (352) Q Consensus 244 g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~ 323 (352) |++++.+++.|.++|.+|+..+..+..+|......+-.++||.+...+ ..+|+++|+.++..+++..|.++|.++|++ T Consensus 229 g~n~i~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~--~~~~a~~~~~~~~~~if~~L~~~e~~~kt~ 306 (328) T PRK08487 229 GFNEIALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAEN--LAKQALRLKEAQYKEIFELLLEWELELKTN 306 (328) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 877899999999999999999999998099688998489998899999--999987338999999999999999998625 Q ss_pred CCCHH-HHHHHHHHHHHHH Q ss_conf 99989-9999999999996 Q gi|254780804|r 324 KYLEK-NIIFQTILYIAQT 341 (352) Q Consensus 324 ~~~~~-~il~~~ll~l~~~ 341 (352) +..++ .++...++++.+. T Consensus 307 ~~~~k~~~l~~~l~~iq~~ 325 (328) T PRK08487 307 SKIDKKEFLFSTLLKIQRI 325 (328) T ss_pred CCCCHHHHHHHHHHHHHHH T ss_conf 5556468999999999975 No 8 >TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA,) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex. Probab=100.00 E-value=3.2e-36 Score=259.05 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=285.2 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH--HHH- Q ss_conf 84799956996589999999999733566677307762088964189999998717888888239998477410--457- Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE--KKV- 97 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~--k~~- 97 (352) .++|+++|+|.++..+....+..... ++.++++...+++.+. ++..+.+.+.+.|||+++|+|++++.... ... T Consensus 2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 78 (331) T TIGR01128 2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDEFNLFTIDGEEF--DWGQLLESAQTLPLFSERRLVELRLPSGLPGAKGK 78 (331) T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHH T ss_conf 64035406405578999999998740-2420122321033200--37788877641355444405665333343441002 Q ss_pred ----HHHHHHHHHCCCCCEEEEEEEC--CCCCCHHHHHHHH-HHH--HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHH Q ss_conf ----8988988510565607999852--6543113566765-431--121014664420013588988754302566756 Q gi|254780804|r 98 ----LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE-KFT--SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 (352) Q Consensus 98 ----~~~l~~~~~~~~~~~~li~~a~--~l~k~~kl~k~~e-~~~--~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 168 (352) .+.+..|+..|++++.+++.++ +++++.+..+++. ... ....++|++....++..|+..+++..|+.++.+ T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (331) T TIGR01128 79 LEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKTPDEQELPRWIQARLKELGLRIDPD 158 (331) T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHH T ss_conf 56679999987314676537887416301345677776766654321012310234435566899999999707865458 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 79999962001235568999999751034443488888775310122111467888764102369999999853110001 Q gi|254780804|r 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 (352) Q Consensus 169 a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~ 248 (352) +...|+..+++|+..+.+|++||.+|.++...|+.++|..+++.+..+++|++++|++.|+..++..++..+...|+.|+ T Consensus 159 a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a~~~~~~~~~~~~l~~l~~~~~~~~ 238 (331) T TIGR01128 159 AVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILDGLLGEGEEPL 238 (331) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH T ss_conf 99999987253078888777777752378766688999988533114667889998860438999999998874041157 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCC Q ss_conf 458999999999999999830256--8989999860899997689999999864998999999999999999953-2899 Q gi|254780804|r 249 ALLHGFLQKFQLLEKIHIIKECSN--ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 (352) Q Consensus 249 ~il~~L~~~f~~L~~~~~~~~~~g--~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K-~~~~ 325 (352) .+++.+.++++.++.++.....+. .+..+.....+ ++|+++++.+..++++|+...+.+++..+.++|..+| .+.. T Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~k~~~~~ 317 (331) T TIGR01128 239 ILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLG-PIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGLG 317 (331) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 8999999999999998887763002210889998733-655035677899985057788999999999989985024565 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 98999999999999 Q gi|254780804|r 326 LEKNIIFQTILYIA 339 (352) Q Consensus 326 ~~~~il~~~ll~l~ 339 (352) .....+..+++.+| T Consensus 318 ~~~~~l~~l~~~~~ 331 (331) T TIGR01128 318 DPWLELELLLLKLA 331 (331) T ss_pred CHHHHHHHHHHHCC T ss_conf 25789999876309 No 9 >pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA. Probab=99.96 E-value=6.9e-28 Score=203.80 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=147.1 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-----HHHHH Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741-----04578 Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-----EKKVL 98 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-----~k~~~ 98 (352) |+|||+|.|++++.++++++++..++.+++++.++|+.+. +.+.+.++++|+||||++|+|+|++... ..+.. T Consensus 1 Yll~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~~~--~~~~i~~~~~t~slF~~~rlvii~~~~~~~~~~~~~~~ 78 (172) T pfam06144 1 YLLYGEDPFLLEETKDQILKAALDQGFEDFNYIYFDLEED--WADDVLEECETLPFFSDKRIVILNNPNLKESKLNEKLL 78 (172) T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC--CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHH T ss_conf 9797285999999999999997379973036898627766--69999999728998889769999776424455539999 Q ss_pred HHHHHHHHCCCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 988988510565607999852-6543113566765431121014664420013588988754302566756799999620 Q gi|254780804|r 99 DCLEEIIIKNICNHIIIIKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 (352) Q Consensus 99 ~~l~~~~~~~~~~~~li~~a~-~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~ 177 (352) +.+..|+.+|++++++|+.+. +.++++++.|.+++ .+..++|++++.++++.||+++++++|++|+++|+++|++++ T Consensus 79 ~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k--~~~~i~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~ 156 (172) T pfam06144 79 KRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKK--KATVVECFTLKEEELIQWIQKRAKELGLKIEKDALQLLAEKV 156 (172) T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH--CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 999999836998728999836741367888999983--766999348987899999999999849998999999999997 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 0123556899999975 Q gi|254780804|r 178 GGDRIASRNELQKLSS 193 (352) Q Consensus 178 g~d~~~l~~EleKL~l 193 (352) |+|+..+.|||+||+| T Consensus 157 g~nl~~l~~EieKL~L 172 (172) T pfam06144 157 ENNLLAIAQELEKLAL 172 (172) T ss_pred CHHHHHHHHHHHHHCC T ss_conf 8489999999997668 No 10 >PRK05563 DNA polymerase III subunits gamma and tau; Validated Probab=99.93 E-value=4e-22 Score=165.61 Aligned_cols=314 Identities=10% Similarity=0.097 Sum_probs=249.3 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC---C---------------CCCCCEEEEEEHHH--HHCCHHH Q ss_conf 75321001013847999569965899999999997335---6---------------66773077620889--6418999 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI---T---------------YHDPFSLVVLNALE--IQKNIST 69 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~---~---------------~~~~~~~~~~~~~e--~~~d~~~ 69 (352) +++.-++...+| .|||+|+----+...++.+.+.+.- + .+..+.+..+|+.. -.++... T Consensus 28 L~n~i~~~~i~h-ayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv~Eidaas~~gvd~iR~ 106 (541) T PRK05563 28 LKNQIINNRIAH-AYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDVIEIDAASNNGVDDIRE 106 (541) T ss_pred HHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH T ss_conf 999998499320-4530387995899999999999579998889857514889998568988736624444478899999 Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200 Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352) +.+.+...|..|..|++|++.+.. ++....+|...++.||+++.+|+...+..|- -..+ ...+..+.|.+.+.. T Consensus 107 ~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~~~Filatte~~ki---~~tI--~SRcq~f~f~~i~~~ 181 (541) T PRK05563 107 IIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQKL---PITI--LSRCQRFDFKRIKVK 181 (541) T ss_pred HHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---CHHH--HHHEEEEEEEECCHH T ss_conf 99761048767870599997723389999999999985487775699976984427---4556--742135775438999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641 Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352) Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352) ++...++..+.++|+.++++|+.+++...+|+++...+-||.+.+|.+ +.||.++|..++|......+++|+++++.+ T Consensus 182 ~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~~--~~it~~~v~~~lG~~~~~~l~~l~~~i~~~ 259 (541) T PRK05563 182 DIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMGD--GKVDYDDVVSMLGLVTNENLFDITDSIIEK 259 (541) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCC T ss_conf 999999999998499987899999997459977889999999998359--986699999996899989999999999858 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352) |..+++..++++...|.+|..++..|..+||.|+.++.. ......+. +.......+..+++.|+...+.+ T Consensus 260 d~~~~l~~~~~i~~~G~d~~~fl~dLi~~~R~lll~k~~-----~~~~~~l~-----~~~e~~~~l~~~a~~~~~~~l~~ 329 (541) T PRK05563 260 DIEKSMEIIDDIVLSGKDIYNFIKDLITHFRNLLMVKVS-----SNPEEILD-----MSEENIELLKEQSKKIRIEEIMR 329 (541) T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHC-----CCHHHHHHHHHHHHCCCHHHHHH T ss_conf 999999999999986999999999999999999997606-----97376521-----79999999999997089999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999953289998999999999999963 Q gi|254780804|r 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352) Q Consensus 309 ~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352) ++..|.+++.++|.+ ..+...++-.++++|+.. T Consensus 330 ~~~~L~~~~~~lk~s-~~pr~~lEm~likl~~~~ 362 (541) T PRK05563 330 CIRILQEAEEQSKWS-KQPRIYLELAIIKMCKIE 362 (541) T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC T ss_conf 999999999996148-981499999999985346 No 11 >PRK06647 DNA polymerase III subunits gamma and tau; Validated Probab=99.92 E-value=2.4e-21 Score=160.42 Aligned_cols=313 Identities=12% Similarity=0.149 Sum_probs=247.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEEHHH--HHCCHH Q ss_conf 8753210010138479995699658999999999973356------------------66773077620889--641899 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT------------------YHDPFSLVVLNALE--IQKNIS 68 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~------------------~~~~~~~~~~~~~e--~~~d~~ 68 (352) .+++.-++..++| .|||+|+.---+...+..+.+.+.-. .+....+..+|+.. -.++.. T Consensus 27 ~L~nai~~~rl~H-AyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~DviEidaasn~~VddIR 105 (560) T PRK06647 27 TLKHSIEKNKIAN-AYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDVIEIDGASNTSVQDVR 105 (560) T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHH T ss_conf 9999997499774-366328998789999999999965999999888878878888745999875764364548889999 Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420 Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352) Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352) .+.+.+.-.|.-|..|++||+.+.. ......+|...++.||+++++|+......+ +-..+ ...+..+.|.+... T Consensus 106 ~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~K---I~~TI--~SRCQ~f~Fk~i~~ 180 (560) T PRK06647 106 QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK---LPATI--KSRCQHFNFRLLSL 180 (560) T ss_pred HHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH---CHHHH--HHHHEEEECCCCCH T ss_conf 99998632876687069996465655999999999986348875599997799476---84899--96510410555999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352) .++...++..+.++|++++++|+.+++...+|+++...+-+|.+..|. ++.||.++|..+++......+++|+++++. T Consensus 181 ~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~--~~~i~~~~v~~~lG~~~~~~~~~l~~~i~~ 258 (560) T PRK06647 181 EKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFS--NSDITLEQIRSKMGLTSDEFLEKLSSSILN 258 (560) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 999999999998679887999999999977895888999999999607--997789999998689888999999999994 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352) +|..+++..++++...|.++..++..|..+||.|+.++.. ....+.... ....+..+++.|..+.+. T Consensus 259 ~d~~~~l~~~~~i~~~G~d~~~fl~~li~~~R~lll~k~~-----~~~~~~~~~--------~~e~i~~~a~~~d~~~l~ 325 (560) T PRK06647 259 KDLKELLCVLDAIFLSGVSVEQFLLDCIEFFRELLFLKLG-----IKNEMFIGI--------KAESLPEKLLEFDLNQIE 325 (560) T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CCHHHHCCC--------CHHHHHHHHHHCCHHHHH T ss_conf 6999999999999980999999999999999999997614-----862433123--------188999999747999999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999999999532899989999999999999631 Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352) .++..+.++...++. +..++..++-+++++|+..- T Consensus 326 ~~~~il~~~~~dl~~-s~~Pk~~lEm~llRml~l~~ 360 (560) T PRK06647 326 RAISVLLETYRDLQF-SVNPRYELEINFIKILRLKD 360 (560) T ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCC T ss_conf 999999989985786-89930889999999984678 No 12 >PRK06305 DNA polymerase III subunits gamma and tau; Validated Probab=99.92 E-value=4.5e-21 Score=158.62 Aligned_cols=302 Identities=12% Similarity=0.084 Sum_probs=240.7 Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC-------------------CCCEEEEEEHHHH--HCCHHH Q ss_conf 5321001013847999569965899999999997335666-------------------7730776208896--418999 Q gi|254780804|r 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-------------------DPFSLVVLNALEI--QKNIST 69 (352) Q Consensus 11 ~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~-------------------~~~~~~~~~~~e~--~~d~~~ 69 (352) ++--++...+| .|||+|+.---+...+..+.+.+.-... ....+..+|+..- .+|... T Consensus 30 ~nai~~~ri~H-AyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~~gVddIRe 108 (462) T PRK06305 30 KNALRFNRAAH-AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASHRGIEDIRQ 108 (462) T ss_pred HHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH T ss_conf 99998499762-34303899859999999999996799998888988766888998638999868643553446689999 Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200 Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352) +.+.+.-.|.-|..|++||+++.. .+....+|...++.||+++++|+...+..|- -..+ ...+..+.|.+.+.. T Consensus 109 l~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe~~KI---p~TI--lSRCQrf~F~~i~~~ 183 (462) T PRK06305 109 INETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKI---PGTI--LSRCQKMHLKRIPEE 183 (462) T ss_pred HHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHC---CHHH--HHHHHEEECCCCCHH T ss_conf 99771008867750599981521179999999999861898774999981881428---5478--765402332579999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641 Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352) Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352) ++...++..+.++|+.++++|+.+++...+|+++...+-+|.+..|.+ +.||.++|..++|......+++|+++++.+ T Consensus 184 ~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i~~~~--~~it~~~V~~~lG~v~~~~l~~L~~ai~~~ 261 (462) T PRK06305 184 TIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP--KSLSPDTVAKALGLLSQDSLYTLAEAITTQ 261 (462) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCC T ss_conf 999999999998399859999999999858958789999999998479--986899999986899889999999999838 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352) |..+++..++++...|.++..++..|..+||.|+..+ . ...+...++.|+.+.+.+ T Consensus 262 d~~~~l~~~~~i~~~G~d~~~~l~dL~~~~r~ll~~~-----~-------------------~~~~~~~a~~~~~e~l~~ 317 (462) T PRK06305 262 NYAQALGPVTDALNSGVAPAHFLHDLTLFFRSLLLKQ-----E-------------------NSTLSSFASKYSSEQLLE 317 (462) T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC-----C-------------------HHHHHHHHHHCCHHHHHH T ss_conf 9999999999999849999999999999999999862-----6-------------------799999987479999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999953289998999999999999963102 Q gi|254780804|r 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 (352) Q Consensus 309 ~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~~ 345 (352) ++..|.+++.+++. +..+...++-.++++++.+.+- T Consensus 318 ~~~il~~~~~~l~~-a~~~r~~lEm~llrl~~~~~~~ 353 (462) T PRK06305 318 IIDFLGESAKHLQL-TIFEKTFLETVIIHLIRIYQRP 353 (462) T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999525-9974799999999999827799 No 13 >TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex. Probab=99.91 E-value=6.5e-21 Score=157.59 Aligned_cols=316 Identities=14% Similarity=0.167 Sum_probs=249.2 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH--CCCCCCCC---------------EEEEEEHHH--HHCCHHHH Q ss_conf 753210010138479995699658999999999973--35666773---------------077620889--64189999 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPF---------------SLVVLNALE--IQKNISTF 70 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~--~~~~~~~~---------------~~~~~~~~e--~~~d~~~l 70 (352) |++--++...+| -|||.|+----+-..++-+.|++ .++..+|+ .+..+|+.- =.+|+.++ T Consensus 26 L~NAi~~~ri~H-AYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l 104 (363) T TIGR02397 26 LKNAIKNGRIAH-AYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREL 104 (363) T ss_pred HHHHHHHCCCCC-EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHH T ss_conf 999997189662-3450285997635589999998658878778777750227765289866688648656878899999 Q ss_pred HHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 99871788888823999847741-04578988988510565607999852654311356676543112101466442001 Q gi|254780804|r 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 (352) Q Consensus 71 ~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~ 149 (352) .+.+.-.|..|-.||.||+.+.- ++....+|...++.||+++++|+-..+..| +=..+ -..+.-..|...+..+ T Consensus 105 ~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~K---iP~TI--lSRCQrF~Fk~i~~~~ 179 (363) T TIGR02397 105 RENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHK---IPATI--LSRCQRFDFKRIPLED 179 (363) T ss_pred HHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH---CCCCC--EEECEEECCCCCCHHH T ss_conf 873036875544335887323028656899987652279876288873487112---05540--2100031267899899 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHH- Q ss_conf 358898875430256675679999962001235568999999751034-443488888775310122111467888764- Q gi|254780804|r 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-DILITEQHVKDIICDTHVLYIEEIINATIQ- 227 (352) Q Consensus 150 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~-~~~It~~dI~~~v~~~~~~~if~L~dai~~- 227 (352) +.+.++..+.++|+++|++|+..++...+|.++...+=+|.+++|..+ ++.||.++|.+++|-..+..+++|+++++. T Consensus 180 i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~~~l~~l~~~~~~~ 259 (363) T TIGR02397 180 IVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDEEKLIELLEAILNK 259 (363) T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC T ss_conf 99999999987088317789999999628961068899999998268878865789999983577789999999997538 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352) +|..+++..++++...|.+|..++..|..+++.++.++.... .+ ....... ........++.++..|+.+.+. T Consensus 260 ~d~~~~l~~~~~~~~~G~~~~~f~~~l~~~~~~~~~~~~~~~-~~-~~~~ll~-----~~~~~~~~~~~~~~~~~~~~~~ 332 (363) T TIGR02397 260 RDTEEALKILDEILESGVDPEKFLEDLIEFLRDLLLIKKTPD-EI-EASNLLE-----ILESEQEFLKELAQKLSLEFLL 332 (363) T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-CH-HHHHHHH-----HHHHHHHHHHHHHHHCCHHHHH T ss_conf 768899999999987288898999999999999886440465-20-1224432-----2257888999999616978999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999953289998999999999999 Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) +++..+.+...++|. +..+...++-++++++ T Consensus 333 ~~~~~l~~~~~~~~~-~~~~~~~lE~~l~~~~ 363 (363) T TIGR02397 333 RLIDILLEALKDLKF-SNNPRIALEMTLLRLL 363 (363) T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHC T ss_conf 999999877873200-0015899999999849 No 14 >PRK06674 DNA polymerase III subunits gamma and tau; Validated Probab=99.91 E-value=1.5e-20 Score=155.10 Aligned_cols=317 Identities=11% Similarity=0.144 Sum_probs=244.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---C---------------CCCEEEEEEHHH--HHCCHH Q ss_conf 87532100101384799956996589999999999733566---6---------------773077620889--641899 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---H---------------DPFSLVVLNALE--IQKNIS 68 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~---------------~~~~~~~~~~~e--~~~d~~ 68 (352) .|++.-++-..+| .|||+|+.---+...+..+.+.+.-.. . ....+..+|+.. -.++.. T Consensus 27 ~L~nai~~~ri~H-AyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaasn~gVd~IR 105 (563) T PRK06674 27 TLQNALLQEKVSH-AYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAASNNGVDEIR 105 (563) T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHH T ss_conf 9999998499650-343128998689999999999857999999887766878999855899877985255557879999 Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420 Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352) Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352) .+.+.+.-.|.-+..|++||+.+.. ......+|...++.||.++++|+...+..+ +-..+ ...+..+.|...+. T Consensus 106 ~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~viFILaTtep~k---i~~TI--~SRCQrf~F~ri~~ 180 (563) T PRK06674 106 DIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGHVIFILATTEPHK---IPPTI--ISRCQRFDFRRISV 180 (563) T ss_pred HHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH---CCHHH--HHHHEEEECCCCCH T ss_conf 99998264886787379998545637999999999986388756499996599475---84788--73310312788999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352) .++..-++..+.++|+.++++|+.+++...+|.++...+-||....|.+ +.||.++|..++|......+++|+++++. T Consensus 181 ~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~s~~~--~~i~~~~v~~~lG~~~~~~~~~l~~~i~~ 258 (563) T PRK06674 181 NDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQAISFSD--ERVTTEDVLAVTGAVSQQYLGNLVECIRE 258 (563) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 9999999999998499987889999999769978899999999997159--97689999998689988999999999984 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352) ||...++..++.++..|.+|..++.-|..+||.++.++... +........ .. ...+..+++.++...+. T Consensus 259 ~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~-----~~~~~~~~~----~~--~~~~~~~~~~~~~~~l~ 327 (563) T PRK06674 259 NDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAP-----QLEHMLERV----MV--DEQFRMLSEEMPPEVIY 327 (563) T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHH----HH--HHHHHHHHHCCCHHHHH T ss_conf 89999999999999879999999999999999988742379-----567654311----15--49999998528999999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999953289998999999999999963102 Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 (352) Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~~ 345 (352) +++..|.++..++|.+ ..+...++-.++++|+.+... T Consensus 328 ~~i~~l~~~~~~~r~s-~~~~~~lE~~~vkl~~~~~~~ 364 (563) T PRK06674 328 EIIHTLSKSQQEMKWT-NHPRIFLEVVMVQLCQQFMMQ 364 (563) T ss_pred HHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCCC T ss_conf 9999999999996147-882188999999995303588 No 15 >PRK07270 DNA polymerase III subunits gamma and tau; Validated Probab=99.90 E-value=3.6e-20 Score=152.61 Aligned_cols=310 Identities=12% Similarity=0.101 Sum_probs=237.0 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---CCC---------------CEEEEEEHHH--HHCCH Q ss_conf 887532100101384799956996589999999999733566---677---------------3077620889--64189 Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDP---------------FSLVVLNALE--IQKNI 67 (352) Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~~~---------------~~~~~~~~~e--~~~d~ 67 (352) +.|++.-++....| .|||+|+.---+...+..+.+.+.-.. .++ ..+..+++.. -.+++ T Consensus 25 ~~L~nal~~~ri~H-AyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEidaas~~gVd~I 103 (557) T PRK07270 25 TTLKQAVESGKISH-AYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNGSLEDVIEIDAASNNGVDEI 103 (557) T ss_pred HHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHH T ss_conf 99999998599540-44210899868999999999995799989999888777999987589997487347776788999 Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999871788888823999847741-04578988988510565607999852654311356676543112101466442 Q gi|254780804|r 68 STFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146 (352) Q Consensus 68 ~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~ 146 (352) ..+.+.+.-.|.-|..|++||+++.. ......+|...++.||+++++|+...+..+= -..+ ...+..++|.+.+ T Consensus 104 Rei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Ttep~kI---l~TI--~SRCQrf~F~~i~ 178 (557) T PRK07270 104 RDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKI---PATI--LSRVQRFEFKSIK 178 (557) T ss_pred HHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHC---CHHH--HHHHHHCCCCCCC T ss_conf 9999984238777883899971445349999998999852899876999984994759---2888--7430001088899 Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 00135889887543025667567999996200123556899999975103444348888877531012211146788876 Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 (352) Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~ 226 (352) ..++..-++..+.++|+.++++|+.+++...+|+++...+-||....|..+ ..||.++|..++|......+++++++++ T Consensus 179 ~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~~s~~~~-~~it~~~v~~~~G~~~~~~l~~l~~~~~ 257 (557) T PRK07270 179 TKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQALSLSQD-NQVTIAIAEEITGSISLLALDDYVAALS 257 (557) T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 999999999999983998699999999997799687899999999971799-9767999999968998999999999998 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHH Q ss_conf 41023699999998531100014589999999999999998302568989999860899997689999999864998999 Q gi|254780804|r 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 (352) Q Consensus 227 ~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l 306 (352) .+|...++..++.++..|.+|..++..|..+||.|+.++.. +... . . .....+...++.+.+ T Consensus 258 ~~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~Rdll~~k~~----~~~~-~----------~---~~~~~~~~~~~~~~l 319 (557) T PRK07270 258 QQDATKALAALETIFDSGKSMSRFATDLLTYLRDLLIVKAG----GENT-H----------H---SAVFDENLSLSQDRI 319 (557) T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCHH-H----------H---HHHHHHHHCCCHHHH T ss_conf 17999999999999986999999999999999976741227----7455-5----------5---676788870699999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999532899989999999999999631 Q gi|254780804|r 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 307 ~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352) -+++..|.++...+|.+ ..+...++-+++++|+... T Consensus 320 ~~~i~~l~~~~~~~~~~-~~p~i~lE~~~~kl~~~~~ 355 (557) T PRK07270 320 FQMIDVVTSSLPEIKKG-THPKIYAEMMTIRLAEIEQ 355 (557) T ss_pred HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCC T ss_conf 99999999999997514-7812999999999853456 No 16 >PRK05907 hypothetical protein; Provisional Probab=99.89 E-value=5.1e-20 Score=151.64 Aligned_cols=304 Identities=12% Similarity=0.071 Sum_probs=226.3 Q ss_pred CCCCCHHH-HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCC Q ss_conf 97633378-87532100101384799956996589999999999733566677307762088964189999998717888 Q gi|254780804|r 1 MATIESHK-FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 (352) Q Consensus 1 ~~~i~~~~-~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~sl 79 (352) |.-|.+.+ |.+-..++- -.+.+| |...---.+. ....+..+.. ..+||..+ -+..+..=-++..| T Consensus 1 ~~~~t~~~df~~~y~e~~---~~~~vi-gs~~~edkd~---~~el~vsg~~-----~~fd~~~l--~~~~l~~wte~~gl 66 (311) T PRK05907 1 SQSITSFKDFSQAYEEKR---PAVTVI-GSSSEEDKDI---FIELLVSGRF-----QEFDGQGL--TIQELLSWTETFGL 66 (311) T ss_pred CCCCHHHHHHHHHHHHCC---CEEEEE-CCCCHHHHHH---HHHHHHCCCC-----CCCCCCCC--CHHHHHHHHHHHCC T ss_conf 975216888999998549---749995-5886456779---9999835652-----30564556--59999888986224 Q ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHH Q ss_conf 888239998477410-45789889885105656079998526543113566765431121014664-4200135889887 Q gi|254780804|r 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEES 157 (352) Q Consensus 80 F~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~-~~~~~l~~~i~~~ 157 (352) |+.+++|-|..+... +...+.|..|+-+|.++.++++++.+.+--+.++|.++++-..-...-|| +.+..+...+-.. T Consensus 67 FaS~evi~I~q~ekls~~~refL~~Yar~P~p~Ltl~lfttk~~~f~sL~kkl~sA~~lslfge~~~drekri~~~liqr 146 (311) T PRK05907 67 FASKETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLPSALCLSLFGEWFADRDKRIAQLLIQR 146 (311) T ss_pred CCCCCEEEEHHHHHHCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 12230100031974135489999998439998579986111589999999865121216873446567888999999989 Q ss_pred HHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 543025667567999996200-1235568999999751034443488888775310122111467888764102369999 Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLG-GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 (352) Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g-~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~ 236 (352) +...|++.+..++..++...+ .++..+.+|++||++|.|++..|+..||+.+|......++|.|-||++++|...+..+ T Consensus 147 A~~~g~Scsl~~Aslfvkkfpqt~~~~ll~Ef~KLlC~vG~k~sle~sDIqsfv~kke~~SlWkLrDAllqRd~~~~~~l 226 (311) T PRK05907 147 AELLGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKQSLEASDIQSFVVKKEQASLWKLRDALLRRDPVEGHSL 226 (311) T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH T ss_conf 99856675078999999976666477899999999988468540018879999955621289988889981385889999 Q ss_pred HHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99985-31100014589999999999999998302568989999860899997689999999864998999999999999 Q gi|254780804|r 237 ADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352) Q Consensus 237 l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352) +..|+ +.|++|+.|++.|..|+. +.+....+.+| -++ -+-...++.+++.+++..+.. T Consensus 227 l~aLl~d~GedpL~li~flRsQ~l--ygLrSi~e~~~----------------erk---~~~f~AyG~erl~q~l~llf~ 285 (311) T PRK05907 227 LRSLLSDMGEDPLGIINFLRSQCL--YGLRSIEEQSK----------------ERK---HRIFVAYGKERLLQALNLLFY 285 (311) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--HHHHHHHHHHC----------------CCH---HHHHHHHCHHHHHHHHHHHHH T ss_conf 999998669980899999999999--87678998615----------------311---279998468999999999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999953289998999999999999 Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) +|..+|.+.+++...++.++.++. T Consensus 286 aEsliKNn~qD~i~a~EtL~irmt 309 (311) T PRK05907 286 AESLIKNNVQDPILAVETLVIRMT 309 (311) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 999986368772899999999871 No 17 >PRK07764 DNA polymerase III subunits gamma and tau; Validated Probab=99.84 E-value=4.8e-17 Score=131.95 Aligned_cols=315 Identities=10% Similarity=0.062 Sum_probs=240.7 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC--------------------CCCCEEEEEEHHH--HHCC Q ss_conf 87532100101384799956996589999999999733566--------------------6773077620889--6418 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY--------------------HDPFSLVVLNALE--IQKN 66 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~--------------------~~~~~~~~~~~~e--~~~d 66 (352) .|++--.+-...| -|||+|..---+......|.+.+.-.. ...+.++.+|+.. -.+| T Consensus 26 ~L~~Ai~~gri~H-AYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~~~~~DviEiDAAS~~gVdd 104 (775) T PRK07764 26 PLSTALDSGRINH-AYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGGPGSLDVVEIDAASHGGVDD 104 (775) T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHH T ss_conf 9999998199763-376237888788899999999966899999898888763788863898888668731565568899 Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999871788888823999847741-0457898898851056560799985265431135667654311210146644 Q gi|254780804|r 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352) Q Consensus 67 ~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352) ...|.+.+.-.|+-+..|++||+.+.. ++...+.|.+.++.||.++++||...+.+|- -..+ ...+..++|... T Consensus 105 iReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEEPP~hvvFIlaTTep~ki---p~TI--~SRcq~f~Fr~i 179 (775) T PRK07764 105 ARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV---IGTI--RSRTHHYPFRLV 179 (775) T ss_pred HHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHCCCCCCCCC T ss_conf 99999854768767863599985354407999999988622786462799954873547---1677--641023452669 Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 20013588988754302566756799999620012355689999997510344434888887753101221114678887 Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352) Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352) ...++...+...+.++|+.++++++.+++...++.++...+-||.|..++++ +.||.+++..+++.....-+.++++++ T Consensus 180 ~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQl~a~~~~-~~v~~~~a~~llG~~~~~~l~~~~~al 258 (775) T PRK07764 180 PPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQLLAGAGD-DGVTYERAVALLGVTDVALIDDAVDAL 258 (775) T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCEEHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9999999999999983998798999999998289667689999999840488-841099999985888589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH Q ss_conf 64102369999999853110001458999999999999999830256898999986089999768999999986499899 Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 (352) Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~ 305 (352) ..+|...++..+++++..|.+|..+..-|..++|.|+.++..-+. +-..+ .....-+...+..|++.++... T Consensus 259 ~~~d~~~~~~~v~~~~~~G~d~~rf~~dLl~~~Rdl~~~~~~~~~-------~~~~l-~~~~~~~~~~~~~qa~~~~~~~ 330 (775) T PRK07764 259 AAGDGAALFGVVDRVIEAGHDPRRFAEDLLERFRDLIVLQAVPDA-------AERGL-VDAPEDVLDRMREQAARLGAAE 330 (775) T ss_pred HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHH-------HHHCC-CCCCHHHHHHHHHHHHHCCHHH T ss_conf 837899999999999982878899999999999999999861066-------65125-5688889999999998609999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 9999999999999953289998999999999999 Q gi|254780804|r 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 306 l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) |.++...+...-..++. ...+...|+-++.++. T Consensus 331 l~r~a~~~~~~l~~m~g-a~~prl~le~~~ar~l 363 (775) T PRK07764 331 LTRYAEVVNAGLGEMRG-ATSPRLLLELLCARLL 363 (775) T ss_pred HHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHC T ss_conf 99999999999987427-8975689999999870 No 18 >PRK09111 DNA polymerase III subunits gamma and tau; Validated Probab=99.84 E-value=9.6e-17 Score=129.94 Aligned_cols=309 Identities=10% Similarity=0.084 Sum_probs=239.1 Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC-----------------------CCCCEEEEEEHHH--HHCCHHH Q ss_conf 00101384799956996589999999999733566-----------------------6773077620889--6418999 Q gi|254780804|r 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY-----------------------HDPFSLVVLNALE--IQKNIST 69 (352) Q Consensus 15 ~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~-----------------------~~~~~~~~~~~~e--~~~d~~~ 69 (352) +....+| -|||.|.----+...++.+.+.+.-.. +....+..+|+.- -.+|... T Consensus 40 ~~~~~~~-a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~ 118 (600) T PRK09111 40 ETGRIAQ-AFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIEMDAASHTGVDDIRE 118 (600) T ss_pred HCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHH T ss_conf 7298420-476457898789999999999966988766689988989988658988668998758851554578889999 Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200 Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352) +++.+.-.|.-|-.|+.||+.+.- ++....+|...++.||+++.+|+-..+..|-- -. -...+.-+.+...+.. T Consensus 119 ~~~~~~~~p~~~~~kv~iidevhmls~~afnallktleepp~~~~fi~att~~~k~p---~t--i~src~~f~~~~~~~~ 193 (600) T PRK09111 119 IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP---VT--VLSRCQRFDLRRIEAE 193 (600) T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC---HH--HHHHHHEECCCCCCHH T ss_conf 998605388777546999600110579999999987625986549999628534375---89--9854412010579999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641 Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352) Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352) ++...+...+.++|++++++|+.+++...+|.++...+=||....|. .+.|+.++|..++|......+++|+++++.| T Consensus 194 ~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQai~~~--~~~i~~~~v~~mLGl~d~~~i~~Ll~~i~~G 271 (600) T PRK09111 194 VLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQAIAHG--AGEVTAEQVRDMLGLADRARVIDLFEALMRG 271 (600) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC T ss_conf 99999999998607686677999999974898421899999999727--9875699999986887677899999999855 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352) |..+++..++++...|.+|..++..|...++.+..++.... .... . .+-..+...+...++..+...|.+ T Consensus 272 d~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~is~~k~~~~----~~~~----~--~lse~E~~~i~~LA~~ls~~~L~~ 341 (600) T PRK09111 272 DVAAALAEFRAQYDAGADPVVVLRDLAEFVHLVTRLKIVPD----AAED----P--SLSEDERTRGAEFAKKLSMRVLSR 341 (600) T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC----CCCC----C--CCCHHHHHHHHHHHHCCCHHHHHH T ss_conf 86889999999998598999999999999999999974675----1014----5--689999999999985089999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999953289998999999999999963 Q gi|254780804|r 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352) Q Consensus 309 ~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352) ..+.+...-..++. ...+...++-+++++|..+ T Consensus 342 ~wQilLkg~~El~~-a~~p~~alEM~LiRL~~~~ 374 (600) T PRK09111 342 MWQMLLKGIAEVQG-APRPLAAAEMVLIRLAHAA 374 (600) T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHC T ss_conf 99999989999730-8983586999999999723 No 19 >PRK06645 DNA polymerase III subunits gamma and tau; Validated Probab=99.83 E-value=1.3e-16 Score=128.99 Aligned_cols=309 Identities=14% Similarity=0.118 Sum_probs=236.5 Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC----------------------CCCCEEEEEEHHH--HHCCHHHHH Q ss_conf 0101384799956996589999999999733566----------------------6773077620889--641899999 Q gi|254780804|r 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITY----------------------HDPFSLVVLNALE--IQKNISTFW 71 (352) Q Consensus 16 ~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~----------------------~~~~~~~~~~~~e--~~~d~~~l~ 71 (352) ....+| .|||+|+----+...++.+.+.+.-.. +....+..+|+.. -.+|...++ T Consensus 39 ~~~~~~-aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~ 117 (507) T PRK06645 39 NDRLAG-GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNCISFNNHNHPDIIEIDAASKTSVDDIRRII 117 (507) T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 399663-4774587997889999999999679998888998888888767899865899985996378888889999998 Q ss_pred HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 9871788888823999847741-045789889885105656079998526543113566765431121014664420013 Q gi|254780804|r 72 NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 (352) Q Consensus 72 ~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l 150 (352) +.+...|..|..|+++++.+.. ++....+|...++.||+++.+|+...+..|- -.. -...+....+.+.+..++ T Consensus 118 ~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEepp~~~~Fi~atte~~ki---p~t--i~srcq~f~~~~i~~~~i 192 (507) T PRK06645 118 ESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI---PAT--IISRCQRYDLRRLSFEEI 192 (507) T ss_pred HHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHC---CHH--HHHHCEEEEEECCCHHHH T ss_conf 635517876743589952142248999999999742786443899974853648---378--885432787545997999 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 588988754302566756799999620012355689999997510-3444348888877531012211146788876410 Q gi|254780804|r 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 (352) Q Consensus 151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~ 229 (352) ...++..+.++|+.++++|+.+++...+|.++...+-||.-..|. ++++.|+.++|.+++|-.-...+++|+++++.|| T Consensus 193 ~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqai~~~~~~~~~I~~~~V~~MLGl~Drs~lidL~e~Il~Gd 272 (507) T PRK06645 193 FKLLEYITKQENLKADIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDLSVIIEFVEYIIERE 272 (507) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC T ss_conf 99999999976877778999999985599867899999999997548987026999999838998567999999998299 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 23699999998531100014589999999999999998302568989999860899997689999999864998999999 Q gi|254780804|r 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 (352) Q Consensus 230 ~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~ 309 (352) ..+|+..++.+...|.+|..++.-|..-+..+.+++.. .+.+. .+.-.+.+.+..-+...+.+.|... T Consensus 273 ~~kaL~~l~~iy~~G~Dp~~iL~DLLeiih~i~~ik~l---~~~~~---------~l~ese~~ri~~is~ki~~~~L~lf 340 (507) T PRK06645 273 TEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKML---PNYSL---------PIYESFNDRTKSILDKISLPHLSIL 340 (507) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCC---------CCCHHHHHHHHHHHHHCCHHHHHHH T ss_conf 99999999999984999999999999999999999747---87545---------6553079999999983899999999 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999999532899989999999999999631 Q gi|254780804|r 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 310 l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352) -+.+...=..++. ...+...++-+++++|..+. T Consensus 341 WQillKg~eEL~~-apnp~~alEM~LIRL~y~~~ 373 (507) T PRK06645 341 WQIYNKGVQEIKI-SYNQLTETEMLVIKSIYSTS 373 (507) T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCC T ss_conf 9999857999852-89888889999999998477 No 20 >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Probab=99.81 E-value=2.1e-16 Score=127.70 Aligned_cols=314 Identities=11% Similarity=0.103 Sum_probs=239.8 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC------------------CCCCEEEEEEHH--HHHCCHH Q ss_conf 87532100101384799956996589999999999733566------------------677307762088--9641899 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY------------------HDPFSLVVLNAL--EIQKNIS 68 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~------------------~~~~~~~~~~~~--e~~~d~~ 68 (352) .|++.-++....|. |||.|+.--.+....+.+.+.+.-.. +.-..++.+|+. .-.+|.. T Consensus 27 ~L~nal~~~ri~hA-YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR 105 (515) T COG2812 27 TLSNALENGRIAHA-YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIR 105 (515) T ss_pred HHHHHHHHCCCHHH-HHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHH T ss_conf 99999980842333-65137777671049999999956889877772253166686514886410113644454867999 Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420 Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352) Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352) .+.+.+...|..|..|+++|+.+.- ++....+|..-++.||+++.+|+-..+..|- -..+ ...+....|...+. T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki---p~TI--lSRcq~f~fkri~~ 180 (515) T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI---PNTI--LSRCQRFDFKRLDL 180 (515) T ss_pred HHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC---CHHH--HHCCCCCCCCCCCH T ss_conf 999872468866664189983187643788888751113686674899853886768---4045--52122022257999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352) .++...+...+.++|++++++|+..++...+|.++...+=++-+..+.. +.||.++|..+++......+.+++++++. T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i~~ 258 (515) T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEAILK 258 (515) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 9999999999874487547999999999828974567778999997067--76569999999688778999999999982 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352) +|...++..++.+...|.+|..++..+..+++.++.+..... ... ... ....-..+..+...|+...+. T Consensus 259 ~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~----~~~-~~~------~~~~~~~~~~~a~~~~~~~l~ 327 (515) T COG2812 259 GDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVP----NEL-QLN------TTEIEERTKELASQISVLNLQ 327 (515) T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC----CHH-HCC------CHHHHHHHHHHHHHCCHHHHH T ss_conf 279999999999998274899999999999999999986054----032-101------014669999999855889999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999953289998999999999999963 Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352) Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352) +....+...-..++. +..+...++-++++++..+ T Consensus 328 ~~~~~~~~~~~e~~~-s~~~~~~~E~~lirl~~~~ 361 (515) T COG2812 328 RLYQLLLPGLKELKR-SLSPRLGLEMTLIRLLEAA 361 (515) T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHC T ss_conf 999999999998613-8662579999999987503 No 21 >PRK08451 DNA polymerase III subunits gamma and tau; Validated Probab=99.79 E-value=1e-15 Score=123.15 Aligned_cols=242 Identities=15% Similarity=0.160 Sum_probs=188.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---C---------------CCCEEEEEEHHHH--HCCHHH Q ss_conf 7532100101384799956996589999999999733566---6---------------7730776208896--418999 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---H---------------DPFSLVVLNALEI--QKNIST 69 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~---------------~~~~~~~~~~~e~--~~d~~~ 69 (352) ++.--.+...+| .|||+|+.---+...+..+.+.+.-.. . ....+..+|+..- .+++.. T Consensus 26 L~nAi~~~Rl~H-AYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDViEiDaasn~gID~IRe 104 (523) T PRK08451 26 LSLALDNNRLAH-AYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDIIEMDAASNRGIDDIRN 104 (523) T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH T ss_conf 999998599671-5875789986889999999999759999998988878889998648999855105533368999999 Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200 Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352) +.+.+...|..|..|++||+.+.. ......+|...++.||+++++|+...+..+ +-..+ ...+..+.|.+.... T Consensus 105 Lie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTep~K---Lp~TI--lSRCQ~f~Fk~I~~~ 179 (523) T PRK08451 105 LIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLK---LPATI--LSRTQHFRFKQIPQN 179 (523) T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHH---CHHHH--HHHHHCCCCCCCCHH T ss_conf 9997235886797279998260304899999999970389878379997599476---84888--742031103379999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641 Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352) Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352) ++...++..+.++|+.++++|+..++...+|.++....-||....|+. +.||.++|..++|......+++|+++++.| T Consensus 180 ~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~--~~i~~~~v~~~lG~~d~~~~~~l~~~i~~~ 257 (523) T PRK08451 180 SIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCK--NAITESKVADMLGLLDPSKIEDFFQAILNK 257 (523) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 999999999998399879999999999778948689879999998479--987799999985888999999999999945 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 023699999998531100014589999999999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L 261 (352) |..+++..+..+ +|.+|..++.-+..+++.. T Consensus 258 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 288 (523) T PRK08451 258 DKEKLFELLAEL--EDYEAEMVLDEMLLFLKEK 288 (523) T ss_pred CHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHH T ss_conf 899999999998--5318999999999999999 No 22 >PRK05896 DNA polymerase III subunits gamma and tau; Validated Probab=99.77 E-value=7.2e-16 Score=124.14 Aligned_cols=249 Identities=15% Similarity=0.106 Sum_probs=197.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC---CCC---------------CCEEEEEEHHH--HHCCHH Q ss_conf 8753210010138479995699658999999999973356---667---------------73077620889--641899 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT---YHD---------------PFSLVVLNALE--IQKNIS 68 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~---~~~---------------~~~~~~~~~~e--~~~d~~ 68 (352) .++..-.+...+| .|||+|+...-+...+..+.+.+.-. ..+ ...+..+++.. -.+++. T Consensus 27 ~L~nAI~~~RiaH-AYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~DviEIdaasn~gIDeIR 105 (613) T PRK05896 27 ILVNAILNNKLTH-AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIR 105 (613) T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHH T ss_conf 9999998499762-277558998488999999999966999999998888878999856999986884065557889999 Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420 Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352) Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352) .+.+.+.-.|..|..|++||..+.. ......+|...++.||+++++|+...+..+=- -. -...+.-+.|.+.+. T Consensus 106 eLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Ttep~KLL---pT--IlSRCQrf~Fkri~~ 180 (613) T PRK05896 106 NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP---LT--IISRCQRYNFKKLNN 180 (613) T ss_pred HHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC---HH--HHHCCCCEECCCCCH T ss_conf 9999708587579945999816221799999999985348987837999828815493---76--640355001788998 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352) .++...++..+.++++.++.+|+..++....|.++...+-||.++.|+. +.||.++|..+.+-......+++++++.. T Consensus 181 ~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~~~--~~it~~~v~~~~g~~~~~~~~~~~~~i~~ 258 (613) T PRK05896 181 SELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN--KKIDIEDINKTFGLVDNNKKINLIELIQK 258 (613) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999999999997399878999999999768848789889999998356--88629999999677768999999999985 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 10236999999985311000145899999999999999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~ 265 (352) +|..+.+..++.+..+|.+...++..|..-.+.++... T Consensus 259 ~d~~~~~~~~~~~~~~g~~~~~~~~~li~~l~d~~~y~ 296 (613) T PRK05896 259 NDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQ 296 (613) T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 58999999999999806789999999999999998733 No 23 >PRK00440 rfc replication factor C small subunit; Reviewed Probab=99.73 E-value=3.1e-14 Score=113.35 Aligned_cols=285 Identities=14% Similarity=0.092 Sum_probs=205.6 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--CCH-HHHHHHHHCCCCCCC-CEE Q ss_conf 7532100101384799956996589999999999733566677307762088964--189-999998717888888-239 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNI-STFWNEINSTSLFSK-KKI 85 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--~d~-~~l~~~~~t~slF~~-~kl 85 (352) +++.-++..++| +||||+.---+...+..+.+.+..+... .++..+++.+.. +.. +.+.+.+.+.|+.+. .|+ T Consensus 28 L~~~i~~~~~ph--lLf~GppG~GKTt~a~~la~~l~~~~~~-~~~lelnasd~r~id~vr~~i~~~~~~~~~~~~~~ki 104 (318) T PRK00440 28 LKSFVKEKNMPH--LLFAGPPGTGKTTAALALARELYGEYWR-ENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKI 104 (318) T ss_pred HHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 999998799866--9888959988999999999997698643-4768951645667178999999999726778997389 Q ss_pred EEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 99847741-04578988988510565607999852654311356676543112101466442001358898875430256 Q gi|254780804|r 86 ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 (352) Q Consensus 86 Iii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 164 (352) |+++++.. .+.....|...++.++.++.+|+.+....+ +-..+ ...+..+.|.++...++...++..+.++|++ T Consensus 105 iiiDE~d~l~~~aq~aL~~~mE~~~~~~~fil~~n~~~k---ii~~i--~SRc~~i~f~~~~~~~i~~~L~~I~~~E~i~ 179 (318) T PRK00440 105 IFLDEADNLTSDAQQALRRTMEMYSQTTRFILSCNYSSK---IIDPI--QSRCAVFRFSPLPKEAVIERLRYIAKNEGLE 179 (318) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCH--HHHHEEEECCCCCHHHHHHHHHHHHHHCCCC T ss_conf 998685532255678887643105666258863488333---76155--6551011157899999999999999985999 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH Q ss_conf 67567999996200123556899999975103444348888877531012211146788876410236999999985-31 Q gi|254780804|r 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-AS 243 (352) Q Consensus 165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~-~~ 243 (352) ++++++..++..++||++...|-|+-++.. ...||.++|..+++......+.++++++..|+..++...+.+++ .. T Consensus 180 ~~~~~l~~i~~~s~gdlR~ain~Lq~~~~~---~~~it~~~v~~~~~~~~~~~i~~ii~~~~~~~~~~~~~~l~~ll~~~ 256 (318) T PRK00440 180 ITDDALEAIYYVSEGDMRKAINALQAAAAT---GKEVTEEAVYKITGTARPEEIREMINLALNGDFTEAREKLRELMIDY 256 (318) T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 899999999986499899999999999974---89878999999976999899999999997089999999999999865 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 10001458999999999999999830256898999986089999768999999986499899999999999999995328 Q gi|254780804|r 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 (352) Q Consensus 244 g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~ 323 (352) |.+|.-|+..+.+.+.. . .++.....+++..+.++|..+.. T Consensus 257 g~~~~dIi~~l~~~l~~----------~----------------------------~~~~~~k~~ii~~ia~~e~rl~~- 297 (318) T PRK00440 257 GLSGEDIIKQIHREVLR----------L----------------------------DIPEDLKVELIDAIGEADFRITE- 297 (318) T ss_pred CCCHHHHHHHHHHHHHH----------C----------------------------CCCHHHHHHHHHHHHHHHHHHHC- T ss_conf 99999999999999984----------5----------------------------99989999999999999999870- Q ss_pred CCCHHHHHHHHHHHHHHHHHC Q ss_conf 999899999999999996310 Q gi|254780804|r 324 KYLEKNIIFQTILYIAQTACK 344 (352) Q Consensus 324 ~~~~~~il~~~ll~l~~~a~~ 344 (352) +..+..-++.++.+++...+| T Consensus 298 g~~~~lqLe~lla~l~~l~k~ 318 (318) T PRK00440 298 GANERIQLEALLAKLALLGKK 318 (318) T ss_pred CCCHHHHHHHHHHHHHHHHCC T ss_conf 799999999999999986187 No 24 >PRK12323 DNA polymerase III subunits gamma and tau; Provisional Probab=99.73 E-value=1e-13 Score=109.87 Aligned_cols=308 Identities=10% Similarity=0.081 Sum_probs=228.9 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-----------------------CCCCCEEEEEEHHH--HH Q ss_conf 753210010138479995699658999999999973356-----------------------66773077620889--64 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT-----------------------YHDPFSLVVLNALE--IQ 64 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~-----------------------~~~~~~~~~~~~~e--~~ 64 (352) |++--....++| -|||.|..---+....+.+.|.+.-. .+....+..+|+.- -. T Consensus 28 l~na~~~~r~~h-aylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas~~~v 106 (721) T PRK12323 28 LTHALEQQRLHH-AYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGV 106 (721) T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCH T ss_conf 999997199754-4750279988898999999999768998667898788787765468775689876477436767888 Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 18999999871788888823999847741-04578988988510565607999852654311356676543112101466 Q gi|254780804|r 65 KNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 (352) Q Consensus 65 ~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~ 143 (352) +|...|++.+.-.|.-|-.|+.||+.+.- ++.....|.+-++.||+++.+|+-..+..|- -..+ ...+.-+.+. T Consensus 107 ~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv~FilaTT~~~Ki---p~Ti--lSRc~~f~~~ 181 (721) T PRK12323 107 DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI---PVTV--LSRCLQFNLK 181 (721) T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHCCCC T ss_conf 9999999854558876644699985400058999999998401797553899943863448---5889--8776542347 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 44200135889887543025667567999996200123556899999975103444348888877531012211146788 Q gi|254780804|r 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 (352) Q Consensus 144 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~d 223 (352) ..+..++...+...+.++|+.++++|+++|+...+|.++...+-+|.-+.|.+ +.|+.++|..+++..-...+++|++ T Consensus 182 ~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQaia~~~--g~~~~~~v~~mlg~~d~~~~~~ll~ 259 (721) T PRK12323 182 QMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAIAYSA--GNVSEEAVRGMLGAIDQRYLVRLLD 259 (721) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHH T ss_conf 89999999999999998399779999999999758964768889999998658--9626999999868887789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCH Q ss_conf 87641023699999998531100014589999999999999998302568989999860899997689999999864998 Q gi|254780804|r 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 (352) Q Consensus 224 ai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~ 303 (352) +++.||...++..++.+...|.+...++.-|...+.++...+..-.. ... -+.....+...++.++. T Consensus 260 al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~~lh~ia~~q~~p~~----~~~---------~~~~~~~~~~la~~~~~ 326 (721) T PRK12323 260 ALAAEDGAAVLAIADEMADRSLSFAGALQDLASLLSKVALAQRVPAA----VQD---------DWPEADDIRRLAGVFDA 326 (721) T ss_pred HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC----CCC---------CCHHHHHHHHHHHCCCH T ss_conf 99955899999999999986889999999999999999999856200----135---------55008999999962999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999999999953289998999999999999 Q gi|254780804|r 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 304 ~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) +.++-.+.+....-..+-- ..+...-++-.+|++. T Consensus 327 e~~Ql~yqi~l~gr~dl~~-ap~~~~g~eM~lLRml 361 (721) T PRK12323 327 QAVQLFYQVANLGRSELAL-APDEYAGFTMTLLRML 361 (721) T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH T ss_conf 9999999999831766511-9880250999999998 No 25 >PRK07133 DNA polymerase III subunits gamma and tau; Validated Probab=99.73 E-value=8.3e-14 Score=110.49 Aligned_cols=303 Identities=11% Similarity=0.113 Sum_probs=218.6 Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--C-------------CCCCEEEEEEHHH--HHCCHHHHHHHHHCCC Q ss_conf 010138479995699658999999999973356--6-------------6773077620889--6418999999871788 Q gi|254780804|r 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--Y-------------HDPFSLVVLNALE--IQKNISTFWNEINSTS 78 (352) Q Consensus 16 ~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~--~-------------~~~~~~~~~~~~e--~~~d~~~l~~~~~t~s 78 (352) ....+| .|||+|+..--+-..++.+.+.+.-. . +....+..+|+.. -.++...+.+.+...| T Consensus 36 ~gRIaH-AYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~s~DViEIDAASn~gVDdIReLie~v~y~P 114 (718) T PRK07133 36 SGKISH-AYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNNNLDIIEMDAASNNGVDEIRELRENVKNLP 114 (718) T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC T ss_conf 499750-5862389986889999999999679999999997702143047898737754556688899999999825588 Q ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 888823999847741-0457898898851056560799985265431135667654311210146644200135889887 Q gi|254780804|r 79 LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 (352) Q Consensus 79 lF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~ 157 (352) .-|..|+.||..+.- ......+|...++.||+++++|+...+..+-- .. -...+.-..|.+.+..++...++.. T Consensus 115 ~~gkYKVyIIDEvHMLS~~AfNALLKtLEEPP~hvvFILaTTep~KIP---~T--IlSRCQrFdFkrI~~~~I~~~L~~I 189 (718) T PRK07133 115 QISKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTDVQKIP---LT--ILSRVQRFNFRRISEDVIVHQLENI 189 (718) T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCC---HH--HHHCCEEEECCCCCHHHHHHHHHHH T ss_conf 778724999966200799999999985027987827999708825484---87--7412203358889999999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 54302566756799999620012355689999997510344434888887753101221114678887641023699999 Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 (352) Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l 237 (352) +.++|+.++++|+..++...+|.++...+-+|.++.|+ .+.||.++|..+.|-....+.-++++.+..+|...++..+ T Consensus 190 ~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQv~~f~--ng~it~k~v~~~~Gl~~~~~~i~~~n~~~~~~~~~~l~~l 267 (718) T PRK07133 190 LEKEKIKYEKNALKLIASLASGSLRDALSIADQVSIFG--NGNITLKNVNELFGLVSNEIVINFLNLLYSKNIKEVLEKL 267 (718) T ss_pred HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 99859977899999999976884888987999999854--8987299999996765579999999999861699999999 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 99853110001458999999999999999830256898999986089999768999999986499899999999999999 Q gi|254780804|r 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 (352) Q Consensus 238 ~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d 317 (352) +.+..+|.+|-+++..|..-++..+.... .+ ....+..+. ...... + ..+...--+.+..|.++- T Consensus 268 ~~~~~~gid~~~l~~~li~~~kd~ii~~~---t~---~~~ll~~~~----~~~l~~----l-kId~~fay~~~e~l~~~l 332 (718) T PRK07133 268 NQLKFQGIDPELLVISLINLVKDFIVFKK---TK---DNSLLEYYS----EFDLEN----L-KISIDFAYKFIEELMSLL 332 (718) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHEEEC---CC---CHHHHHHCC----HHHHHH----H-EECHHHHHHHHHHHHHHH T ss_conf 99997588999999999999988832402---57---407987525----887854----1-200999999999999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9953289998999999999999963 Q gi|254780804|r 318 HLARKKKYLEKNIIFQTILYIAQTA 342 (352) Q Consensus 318 ~~~K~~~~~~~~il~~~ll~l~~~a 342 (352) ..++-+..+ -..++-++++++... T Consensus 333 ~~l~~se~p-~~~~Ei~iikl~~~~ 356 (718) T PRK07133 333 KDLKFSEFP-FLTLEIFILKLLSLS 356 (718) T ss_pred HHHHHCCCC-HHHHHHHHHHHHHHC T ss_conf 987740380-788999999998751 No 26 >PRK12402 replication factor C small subunit 2; Reviewed Probab=99.72 E-value=4e-14 Score=112.57 Aligned_cols=280 Identities=15% Similarity=0.125 Sum_probs=194.6 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEE------------------EHH-HH-- Q ss_conf 8753210010138479995699658999999999973356667----7307762------------------088-96-- Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVL------------------NAL-EI-- 63 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----~~~~~~~------------------~~~-e~-- 63 (352) .+++.-++-..+| |||||+.---+...+..+.+.+..+..+ +++...+ +.. .. T Consensus 26 ~L~~~~~~~~~ph--lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~ 103 (337) T PRK12402 26 HLSALAASGNLPH--LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYK 103 (337) T ss_pred HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCC T ss_conf 9999997799876--98889298489999999999967997567833311653113564001016642344201533277 Q ss_pred --HCCHHHHH-HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf --41899999-9871788888823999847741-0457898898851056560799985265431135667654311210 Q gi|254780804|r 64 --QKNISTFW-NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 (352) Q Consensus 64 --~~d~~~l~-~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~ 139 (352) ......+. +.+...|+-++.|+|+++++.. ......+|...++.|+.++.+|+......+ +-..+ ...+.. T Consensus 104 ~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~---ii~tI--~SRC~~ 178 (337) T PRK12402 104 SVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSK---LIPPI--RSRCLP 178 (337) T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCHHH--HHHCEE T ss_conf 3789999999998614887788049997071317999999999887408876699872386444---75247--762445 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHH Q ss_conf 14664420013588988754302566756799999620012355689999997510344434888887753101221114 Q gi|254780804|r 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 (352) Q Consensus 140 v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if 219 (352) +.|.+++..++...++..++++|+++++++++.|+..++||++...|-|+-++.. ....++.+.+..+.+......+- T Consensus 179 i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~--~~~~~~~~~~~~~~~~~~~~~i~ 256 (337) T PRK12402 179 LFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEA--EGEVTTEAALEELSDTGTDETVE 256 (337) T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHCCCCHHHHH T ss_conf 4358989999999999999984999899999999998699899999999999872--79977188999987789799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 6788876410236999999985-311000145899999999999999983025689899998608999976899999998 Q gi|254780804|r 220 EIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 (352) Q Consensus 220 ~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~ 298 (352) ++++++..++...+...+++++ ..|.++..|+..|...+. T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~--------------------------------------- 297 (337) T PRK12402 257 EALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVAR--------------------------------------- 297 (337) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------------------------------------- T ss_conf 99999984899999999999887559999999999999998--------------------------------------- Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 649989999999999999999532899989999999999 Q gi|254780804|r 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 (352) Q Consensus 299 ~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~ 337 (352) ..++...+.+++..+.++|.++.. +..+..-++-++.+ T Consensus 298 ~~~~~~~~~~i~~~~a~~e~rl~~-g~~~~lqL~a~la~ 335 (337) T PRK12402 298 RGYSEYNVAELATLAADADARLTD-AANERIQLNALLAE 335 (337) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH T ss_conf 747868999999999999988751-79999999999984 No 27 >PRK08691 DNA polymerase III subunits gamma and tau; Validated Probab=99.70 E-value=2.4e-13 Score=107.40 Aligned_cols=308 Identities=14% Similarity=0.103 Sum_probs=223.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---CCC---------------CEEEEEEHHH--HHCCHHH Q ss_conf 7532100101384799956996589999999999733566---677---------------3077620889--6418999 Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDP---------------FSLVVLNALE--IQKNIST 69 (352) Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~~~---------------~~~~~~~~~e--~~~d~~~ 69 (352) |++--++..++| -|||+|..---+....+.+.|.+.-.. .++ ..+..+|+.- -.+|... T Consensus 28 L~nal~~~rl~h-aylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~D~~EiDaAs~~~vdd~R~ 106 (704) T PRK08691 28 LQNALDEGRLHH-AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIRE 106 (704) T ss_pred HHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHH T ss_conf 999998199752-3750278987888999999999679999999978777767878558998747742454458899999 Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200 Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352) |++.+.-.|.-|..|+.+|+.+.- ++.....|.+.++.||+++.+|+...+..|- -..+ ...+.-+.+.+.+.. T Consensus 107 l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEEPP~~v~FilaTTdp~Kl---p~TI--lSRC~~f~l~~~~~~ 181 (704) T PRK08691 107 VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV---PVTV--LSRCLQFVLRNMTAQ 181 (704) T ss_pred HHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHHCCCCCCHH T ss_conf 99853468867853599983154438999999998614797560899854884647---5899--988877102689999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641 Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352) Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352) .+...+...+.++|+.++++|+.+|+...+|.++...+-+|.-+.|. .+.|+.++|..++|..-...+++|++++..| T Consensus 182 ~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQaia~~--~g~~~~~~v~~mLG~~d~~~~~~ll~al~~~ 259 (704) T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG--SGKVAENDVRQMIGAVDKQYLYELLTGIINQ 259 (704) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 99999999999839856899999999975785777988999999964--8962699999985888778999999999955 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352) |...++..++.+...|.+--.+|.-|...+.++...+..-..- +. -......+..-++.++.+.++- T Consensus 260 d~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~~~--~~-----------~~~~~~~~~~la~~~~~e~~Ql 326 (704) T PRK08691 260 DGAALTAKAQEMAACAVGFDNALGELAILLQQLALIQAVPNAL--AH-----------DDPDSDILHRLAQTISGEQIQL 326 (704) T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHC--CC-----------CCCCHHHHHHHHHCCCHHHHHH T ss_conf 8999999999999868999999999999999999998581310--45-----------6710899999997089999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 9999999999953289998999999999999 Q gi|254780804|r 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 309 ~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) .+.+....-..+-- ..+...-++-++|++. T Consensus 327 ~Yqi~l~gr~dl~~-ap~~~~g~eM~lLRml 356 (704) T PRK08691 327 YYQIAVHGKRDLSL-APDEYAGFMMTLLRML 356 (704) T ss_pred HHHHHHHCCCCCCC-CCCCHHHHHHHHHHHH T ss_conf 99999822022556-9970253999999998 No 28 >PRK07003 DNA polymerase III subunits gamma and tau; Validated Probab=99.67 E-value=8.1e-13 Score=103.95 Aligned_cols=303 Identities=11% Similarity=0.076 Sum_probs=222.8 Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEEHHH--HHCCHHHHHHHH Q ss_conf 0010138479995699658999999999973356------------------66773077620889--641899999987 Q gi|254780804|r 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT------------------YHDPFSLVVLNALE--IQKNISTFWNEI 74 (352) Q Consensus 15 ~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~------------------~~~~~~~~~~~~~e--~~~d~~~l~~~~ 74 (352) .+-.++| .|||+|.----+-...+.+.|.+.-. .+.-..++.+|+.- -.+|...|++.+ T Consensus 33 ~~~rl~h-aylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~ 111 (816) T PRK07003 33 DGGRLHH-AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERA 111 (816) T ss_pred HCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC T ss_conf 7098631-475117898888899999999867899999897877555787755887754786355435768999999862 Q ss_pred HCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 1788888823999847741-045789889885105656079998526543113566765431121014664420013588 Q gi|254780804|r 75 NSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 75 ~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) .-.|.-|-.|+++|+...- ++.....|.+.++.||+++.+|+-..+..|- -..+ ...+.-+.+...+..++... T Consensus 112 ~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEepP~hv~FilaTTd~~k~---p~ti--lSRc~~f~l~~~~~~~i~~~ 186 (816) T PRK07003 112 VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI---PVTV--LSRCLQFNLKQMPAGHIVSH 186 (816) T ss_pred CCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHCCCCCCCHHHHHHH T ss_conf 247866744799984154339999999998403798664899955880115---2889--87776522367999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 98875430256675679999962001235568999999751034443488888775310122111467888764102369 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a 233 (352) +...+.++|+.++++|+.+|+...+|.++...+-++.-+.|. ++.|+.++|..+++..-...++.|++++..||.... T Consensus 187 l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQaia~~--~g~~~~~~v~~mLG~~d~~~~~~ll~al~~~d~~~~ 264 (816) T PRK07003 187 LERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYS--ANEVTETAVSGMLGALDQTYMVRLLDALAAADGPEI 264 (816) T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH T ss_conf 999999829977999999999976773788885999999846--997379999998588877899999999995589999 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999985311000145899999999999999983025689899998608999976899999998649989999999999 Q gi|254780804|r 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 (352) Q Consensus 234 ~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L 313 (352) +..++++-..|.+...+|..|...+.++...+..-. .... -+.....+.+-++.++.+.++-.+.+. T Consensus 265 ~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~-------~~~~------~~~~~~~~~~la~~~~~e~~Ql~Yqi~ 331 (816) T PRK07003 265 LAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPG-------SVLD------EWPEAADLRRFAELLSPEQVQLFYQIA 331 (816) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCH-------HCCC------CCCCHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 999999998688999999999999999999984610-------0023------462189999999728999999999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999953289998999999999999 Q gi|254780804|r 314 DHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 314 ~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) ...-..+-- ..+...-++-++|++. T Consensus 332 l~gr~dl~~-ap~~~~g~em~llRml 356 (816) T PRK07003 332 TVGRAELGL-APDEYAGFTMTLLRML 356 (816) T ss_pred HHCHHHCCC-CCCCHHHHHHHHHHHH T ss_conf 703443134-9881130999999998 No 29 >PRK05648 DNA polymerase III subunits gamma and tau; Reviewed Probab=99.67 E-value=1.2e-12 Score=102.84 Aligned_cols=303 Identities=10% Similarity=0.074 Sum_probs=225.0 Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC---CC---------------CEEEEEEHHH--HHCCHHHHHHHH Q ss_conf 001013847999569965899999999997335666---77---------------3077620889--641899999987 Q gi|254780804|r 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH---DP---------------FSLVVLNALE--IQKNISTFWNEI 74 (352) Q Consensus 15 ~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~---~~---------------~~~~~~~~~e--~~~d~~~l~~~~ 74 (352) ....++| -|||+|.----+-...+.+.|.+.-..+ .+ ..++.+|+.- -.+|...+++.+ T Consensus 33 ~~~~~~~-a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~d~as~~~v~~~r~~~~~~ 111 (705) T PRK05648 33 DNQRLHH-AYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNV 111 (705) T ss_pred HCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHC T ss_conf 7098630-465007898889899999999867789998897877600466624897763445155447889999999855 Q ss_pred HCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 1788888823999847741-045789889885105656079998526543113566765431121014664420013588 Q gi|254780804|r 75 NSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 75 ~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) .-.|--|-.|+.+|+...- ++.....|.+-++.||+++.+|+-..+..| +-..+ ...+.-+.+......++... T Consensus 112 ~~~p~~~~~kv~~idevhmls~~~fnallktleepp~~v~f~~att~~~k---~p~t~--~src~~~~~~~~~~~~~~~~ 186 (705) T PRK05648 112 QYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQK---LPVTI--LSRCLQFSLKNMSPERVVEH 186 (705) T ss_pred CCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCHHH---CCHHH--HHHHHHCCCCCCCHHHHHHH T ss_conf 51776774579998426541799999998740479754599984287353---75899--97664302368999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 98875430256675679999962001235568999999751034443488888775310122111467888764102369 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a 233 (352) +...+.++|+.++++|+..|+....|.++....-++.-+.|. .+.|+.++|..++|......+++|+++++.||.... T Consensus 187 l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~~~~~--~~~~~~~~v~~mlg~~~~~~~~~l~~a~~~~d~~~~ 264 (705) T PRK05648 187 LSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFG--EGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARAL 264 (705) T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH T ss_conf 999999759977899999999974896777999999998606--884079999998588877899999999995689999 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999985311000145899999999999999983025689899998608999976899999998649989999999999 Q gi|254780804|r 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 (352) Q Consensus 234 ~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L 313 (352) +..++.+...|.+...++..|...+.++...+..-.. .+. -+..+..+...++.++.+.++-.+.++ T Consensus 265 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~p~~----~~~---------~~~~~~~~~~lA~~~s~E~vQL~YQi~ 331 (705) T PRK05648 265 LEAVRHLAEQGPDWNGVLAEMLNVLHRVAIAQALPEA----VDN---------GQGDRERVLALAQALPAEDVQFYYQMG 331 (705) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH----HCC---------CCCHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 9999999985889999999999999999999845021----024---------530499999999857999999999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999953289998999999999999 Q gi|254780804|r 314 DHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 314 ~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) ...-..+.- ..+...-++-.+|++. T Consensus 332 l~gr~dL~l-APd~r~g~EM~LLRmL 356 (705) T PRK05648 332 LIGRRDLPL-APDPRGGFEMVLLRML 356 (705) T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHH T ss_conf 840200466-9970364999999998 No 30 >PRK07994 DNA polymerase III subunits gamma and tau; Validated Probab=99.66 E-value=2.4e-12 Score=100.86 Aligned_cols=308 Identities=11% Similarity=0.062 Sum_probs=224.3 Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHH--HHCCHHHH Q ss_conf 5321001013847999569965899999999997335666------------------773077620889--64189999 Q gi|254780804|r 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALE--IQKNISTF 70 (352) Q Consensus 11 ~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e--~~~d~~~l 70 (352) ++--.+...+| -|||.|.----+....+.+.|.+.-..+ .-..+..+|+.- -.+|..++ T Consensus 29 ~na~~~~r~~h-aylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~~~vd~~rel 107 (643) T PRK07994 29 ANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 107 (643) T ss_pred HHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH T ss_conf 99998298663-48745899888889999999996799999999787677689886589887588636777888999999 Q ss_pred HHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 99871788888823999847741-04578988988510565607999852654311356676543112101466442001 Q gi|254780804|r 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 (352) Q Consensus 71 ~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~ 149 (352) ++.+.-.|.-|..|+++|+...- ++....+|.+.++.||+++.+|+...+..| +-..+ ...+.-+.+.+....+ T Consensus 108 ~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEePp~hv~filaTT~~~k---~p~Ti--lSRC~~f~~~~~~~~~ 182 (643) T PRK07994 108 LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQK---LPVTI--LSRCLQFHLKALDVEQ 182 (643) T ss_pred HHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCHHCEEEEECCCHHH---CCHHH--HHHHHHEECCCCCHHH T ss_conf 984466887785369997221015899999999862378610089986077454---84789--9777650016699999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 35889887543025667567999996200123556899999975103444348888877531012211146788876410 Q gi|254780804|r 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 (352) Q Consensus 150 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~ 229 (352) +...+...+.++|+.++++|+..|+....|.++....-+|.-+.|. .+.|+.++|..++|..-...+|+|+++++.|| T Consensus 183 i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~--~~~~~~~~v~~mlg~~d~~~~~~ll~al~~~d 260 (643) T PRK07994 183 IRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQALSLVEALVEAN 260 (643) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 9999999999759987889999999974786566888999999865--89747999999858998789999999999569 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 23699999998531100014589999999999999998302568989999860899997689999999864998999999 Q gi|254780804|r 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 (352) Q Consensus 230 ~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~ 309 (352) ....+..++++-..|.+...+|.-|...+.++...+..-...+.+. .-....+..-++..+.+.++-. T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~lh~ia~~Q~~p~~~~~~~------------~~~~~~~~~La~~~~~e~vQL~ 328 (643) T PRK07994 261 GERVMALINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGNDM------------AAIELRMRELARTIPPTDIQLY 328 (643) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCC------------HHHHHHHHHHHHHCCHHHHHHH T ss_conf 9999999999998688999999999999999999984712102543------------0167999999984799999999 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999953289998999999999999 Q gi|254780804|r 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 310 l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) +.++...-..+-- ..+.+.-++-++|++. T Consensus 329 YQIal~GrkdL~l-APd~r~gfEMtLLRmL 357 (643) T PRK07994 329 YQTLLIGRKELPY-APDRRMGVEMTLLRAL 357 (643) T ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHH T ss_conf 9999830200466-9871453999999998 No 31 >PRK08853 DNA polymerase III subunits gamma and tau; Validated Probab=99.66 E-value=1.3e-12 Score=102.66 Aligned_cols=301 Identities=10% Similarity=0.047 Sum_probs=219.9 Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC------------------CCCCEEEEEEHHH--HHCCHHHHHHHHHC Q ss_conf 101384799956996589999999999733566------------------6773077620889--64189999998717 Q gi|254780804|r 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITY------------------HDPFSLVVLNALE--IQKNISTFWNEINS 76 (352) Q Consensus 17 ~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~------------------~~~~~~~~~~~~e--~~~d~~~l~~~~~t 76 (352) ..++| .|||.|.----+....+.+.|.+.-.. +.-..+..+|+.- -.+|...+.+.+.- T Consensus 35 ~rl~h-aylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~EiDaAs~~~vdd~rel~~~~~y 113 (717) T PRK08853 35 NRLHH-AYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQY 113 (717) T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCC T ss_conf 99740-57610889888989999999986789999999788870267674478775245405656788999999985554 Q ss_pred CCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 88888823999847741-04578988988510565607999852654311356676543112101466442001358898 Q gi|254780804|r 77 TSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155 (352) Q Consensus 77 ~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~ 155 (352) .|.-|-.|+++|+.+.- ++.....|.+.++.||+++.+|+...+..|- -..+ ...+.-+.+...+..++...+. T Consensus 114 ~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~hv~FilaTT~~~ki---p~Ti--lSRc~~f~l~~~~~~~i~~~l~ 188 (717) T PRK08853 114 KPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKL---PVTI--LSRCLQFHLKPISVDQIHQQLD 188 (717) T ss_pred CCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHCCCCCCCHHHHHHHHH T ss_conf 8877854799983054438999999987603787564899843873437---3889--8765442326899999999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 87543025667567999996200123556899999975103444348888877531012211146788876410236999 Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 (352) Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~ 235 (352) ..+.++|+.++++|+.+|+...+|.++...+-++.-+.|. .+.|+.++|..++|..-...+++|+++++.||....+. T Consensus 189 ~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~--~g~~~~~~v~~mlg~~d~~~~~~ll~al~~~d~~~~~~ 266 (717) T PRK08853 189 FVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALG--NGQVTTDIVSHMLGTLDTDQAIHLLEAISSKQPQTAMD 266 (717) T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH T ss_conf 9999759876999999999976883778888999999965--89716999999858887789999999999558999999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99998531100014589999999999999998302568989999860899997689999999864998999999999999 Q gi|254780804|r 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352) Q Consensus 236 ~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352) .+..+...|.+...+|..|..-+.++...+..-. .+... ......+..-+++++.+.++-.+..+.. T Consensus 267 ~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~--------~~~~~-----~~~~~~i~~la~~~~~e~~Ql~YQi~l~ 333 (717) T PRK08853 267 CIQQLADNGVEWDGLLQQLATQLHRIAMYQALPA--------TLDKA-----QPDAERIELLSKALSPQDVQLYYQIALK 333 (717) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH--------HHCCC-----CCCHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 9999998688999999999999999999984814--------21244-----6418999999983899999999999970 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999953289998999999999999 Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) .-..+-- ..+...-++-.+|++. T Consensus 334 gr~dl~~-apd~~~g~eM~lLRml 356 (717) T PRK08853 334 GRQDLPL-APNGRIGMEMIVLRMM 356 (717) T ss_pred CCCCCCC-CCCHHHHHHHHHHHHH T ss_conf 3011566-9963676999999997 No 32 >PRK06872 DNA polymerase III subunits gamma and tau; Provisional Probab=99.62 E-value=9e-12 Score=97.01 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=219.9 Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHH--HHCCHHHHH Q ss_conf 321001013847999569965899999999997335666------------------773077620889--641899999 Q gi|254780804|r 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALE--IQKNISTFW 71 (352) Q Consensus 12 ~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e--~~~d~~~l~ 71 (352) +--.+..++| -|||+|.----+....+.+.|.+.-..+ .-..++.+|+.- -.+|...++ T Consensus 30 ~a~~~~r~~h-aylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~~~v~~~r~l~ 108 (696) T PRK06872 30 NGLKENRLHH-AYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFIDLIEIDAASRTKVEDTRELL 108 (696) T ss_pred HHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 9997198630-475117898888899999999867899999997888622576744787754675056557889999999 Q ss_pred HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 9871788888823999847741-045789889885105656079998526543113566765431121014664420013 Q gi|254780804|r 72 NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 (352) Q Consensus 72 ~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l 150 (352) +.+.-.|--|-.|+.+|+...- ++.....|.+-++.||+++.+|+-..+..|- -.. -...+.-+.+...+...+ T Consensus 109 ~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~v~f~latt~~~k~---p~t--ilsrc~~f~~~~~~~~~i 183 (696) T PRK06872 109 DNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKL---PIT--ILSRCMQFHLKALDQTQI 183 (696) T ss_pred HHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHH--HHHHHHHEECCCCCHHHH T ss_conf 845457767754799970054438999999987502797544899843863227---488--987665300268999999 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 58898875430256675679999962001235568999999751034443488888775310122111467888764102 Q gi|254780804|r 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 (352) Q Consensus 151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~ 230 (352) ...+...+.++|+.++++|+++|+...+|.++...+-++.-+.|. .+.|+.++|..++|......+|+|+++++.||. T Consensus 184 ~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~--~g~~~~~~v~~mlg~~~~~~~~~l~~a~~~~d~ 261 (696) T PRK06872 184 AQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMS--NANITLDVVSNMLGLLDDNQPIDILYALQQGNG 261 (696) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCH T ss_conf 999999999849977999999999975895677888999999975--896169999998588877799999999995589 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 36999999985311000145899999999999999983025689899998608999976899999998649989999999 Q gi|254780804|r 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 (352) Q Consensus 231 ~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l 310 (352) ...+..++++...|.+...+|.-|...+.++...+..-. .. . ....+..-+++.+.+.++-.+ T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~~~-~~-~---------------~~~~~~~la~~~~~e~~ql~Y 324 (696) T PRK06872 262 EKLMKVIQAVAEKGGDWDKLLGEIAEKLHQIAMLQLLPQ-KS-S---------------EETQLGFLAKHISPEDVQFFY 324 (696) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CC-C---------------CHHHHHHHHHHCCHHHHHHHH T ss_conf 999999999998688999999999999999999985864-57-8---------------547999999857999999999 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 999999999532899989999999999999 Q gi|254780804|r 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352) Q Consensus 311 ~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352) .++...-..+-- ..+.+.-++-.+|++.. T Consensus 325 qi~l~g~~dl~~-apd~~~g~eM~lLRmlA 353 (696) T PRK06872 325 QVMVSGRKELAF-APNRRIGVEMTLLRALA 353 (696) T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHH T ss_conf 999841200456-99646749999999983 No 33 >PRK05564 DNA polymerase III subunit delta'; Validated Probab=99.61 E-value=6.2e-12 Score=98.06 Aligned_cols=290 Identities=14% Similarity=0.107 Sum_probs=201.1 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC--CCEEEEEEHHH---H-HCCHHHHHHHHHCCCCCCC Q ss_conf 8753210010138479995699658999999999973356667--73077620889---6-4189999998717888888 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALE---I-QKNISTFWNEINSTSLFSK 82 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~--~~~~~~~~~~e---~-~~d~~~l~~~~~t~slF~~ 82 (352) .+++--.+...+|. |||+|++-.-+...+..+.+.+.....+ ...+..++..+ + .+++..+.+.+.-.|.-|+ T Consensus 15 ~L~~~i~~~rl~HA-yLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I~vd~IR~l~~~~~~~p~~g~ 93 (313) T PRK05564 15 RIDNSIIKGKFSHA-SLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSIGVDDIRNIIEEVNKKPYEGD 93 (313) T ss_pred HHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 99999987998750-43279998509999999999982899778898658863322569998999999999840862589 Q ss_pred CEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 239998477410-457898898851056560799985265431135667654-311210146644200135889887543 Q gi|254780804|r 83 KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLI 160 (352) Q Consensus 83 ~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352) +|+++|.++... .....+|...++.||+++++|+.+.+..+ ...+ ...+..+++.|.+..++..|+.+. T Consensus 94 ~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~------lLpTI~SRCQ~~~f~~l~~~~i~~~L~~~--- 164 (313) T PRK05564 94 KKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ------ILDTIKSRCQIYKLNRLSKEDIEKFISYK--- 164 (313) T ss_pred CEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHH------CCCHHHCCCEEEECCCCCHHHHHHHHHHH--- T ss_conf 569998077775899999984550368998589986498354------75778706535668998999999999986--- Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998 Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352) Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352) .-.++++++..++...+|.......-++ +. ...++ ...+.++..++..++....+...+.+ T Consensus 165 -~~~~~~~~~~~~~~~s~G~~~~a~~~~~-------~~---~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~ 225 (313) T PRK05564 165 -YNDIDEENKNSAIAFSDGIPGKVEKFIE-------DD---SLKDI--------RNMSLEILKDIDKSNINIIIKYENFL 225 (313) T ss_pred -CCCCCHHHHHHHHHHCCCCHHHHHHHHH-------HH---HHHHH--------HHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf -2589999999999982998799999840-------57---99999--------99999999999867999999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995 Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352) Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352) ...+.++..++..+...+|.++.++. .+.. ... ++......+...+.+|+...+.+++..+.++...+ T Consensus 226 ~~~~~~~~~~l~~l~~~~rD~l~~k~----~~~~-~~~-------~n~d~~~~l~~~a~~~~~~~l~~~~~~l~~a~~~l 293 (313) T PRK05564 226 ISYKENWEEILTCILSYIRDSLLFKE----TGNN-ELI-------INVDKIEDIKEISEKYSYKKLNKMIEIINDARNNL 293 (313) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC----CCCC-CCE-------ECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 98693499999999999999998515----5983-201-------68889999999985499999999999999999998 Q ss_pred HCCCCCHHHHHHHHHHHHHH Q ss_conf 32899989999999999999 Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQ 340 (352) Q Consensus 321 K~~~~~~~~il~~~ll~l~~ 340 (352) +. ..++...++.+++++.. T Consensus 294 ~~-n~N~~L~le~lllkl~e 312 (313) T PRK05564 294 SS-NTNSTLVFDSMLIKMQE 312 (313) T ss_pred HH-CCCHHHHHHHHHHHHHH T ss_conf 74-59989999999998843 No 34 >PRK08770 DNA polymerase III subunits gamma and tau; Validated Probab=99.60 E-value=1.8e-11 Score=95.08 Aligned_cols=302 Identities=10% Similarity=0.043 Sum_probs=219.8 Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEEHHH--HHCCHHHHHHH Q ss_conf 10010138479995699658999999999973356------------------66773077620889--64189999998 Q gi|254780804|r 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT------------------YHDPFSLVVLNALE--IQKNISTFWNE 73 (352) Q Consensus 14 ~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~------------------~~~~~~~~~~~~~e--~~~d~~~l~~~ 73 (352) -.+..++| -|||.|.----+-...+.+.|.+.-. .+.-..++.+|+.- -.+|...|++. T Consensus 32 ~~~~~~~~-a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~ 110 (663) T PRK08770 32 LDSGRVHH-AFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIEN 110 (663) T ss_pred HHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 97099740-47622799888889999999986789999999787787789885489886588646765888999999984 Q ss_pred HHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 71788888823999847741-04578988988510565607999852654311356676543112101466442001358 Q gi|254780804|r 74 INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152 (352) Q Consensus 74 ~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~ 152 (352) +.-.|--|--|+.+|+...- ++.....|.+-++.||+++.+|+-..+..|- -.. -...+.-+.+......++.. T Consensus 111 ~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~v~f~~att~~~k~---p~t--~~src~~f~~~~~~~~~~~~ 185 (663) T PRK08770 111 AQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKL---PVT--VLSRCLQFNLKRLDEDQIQG 185 (663) T ss_pred CCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHH--HHHHHHHCCCCCCCHHHHHH T ss_conf 4358877743699970043328999999987402786442899854873337---489--99888763437799999999 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 89887543025667567999996200123556899999975103444348888877531012211146788876410236 Q gi|254780804|r 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 (352) Q Consensus 153 ~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~ 232 (352) .+...+.++|+.++++|+..|+....|.++...+-++.-..|. ++.|+.++|..++|......+++|+++++.||... T Consensus 186 ~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~--~~~~~~~~v~~mlg~~~~~~~~~l~~al~~~d~~~ 263 (663) T PRK08770 186 QMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYA--GGALREDVVRTMLGTVDRTQVGAMLQALADGDGAR 263 (663) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH T ss_conf 9999999839976999999999974785677888999999866--89768999999848888789999999999668999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99999998531100014589999999999999998302568989999860899997689999999864998999999999 Q gi|254780804|r 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 (352) Q Consensus 233 a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~ 312 (352) .+..++++-..|.+...+|.-|...+.++...+..-... . .........-+++++.+.++-.+.+ T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~q~~~~~~--~-------------~~~~~~~~~lA~~~~~e~vQL~YQI 328 (663) T PRK08770 264 LLQVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPSVA--F-------------VGDGIDPTPFAAQLRPEVVQLWYQM 328 (663) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--C-------------CCCHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999868899999999999999999998463012--4-------------5435679999972899999999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999953289998999999999999 Q gi|254780804|r 313 IDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 313 L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) ....-..+-- ..+...-++-++|++. T Consensus 329 aL~Gr~dL~~-APd~~~gfeM~LLRml 354 (663) T PRK08770 329 ALNGRRDLYL-APSPRAGFEMAVLRML 354 (663) T ss_pred HHHHHHHCCC-CCCHHHHHHHHHHHHH T ss_conf 9830432556-9866786999999984 No 35 >KOG0989 consensus Probab=99.53 E-value=3.3e-11 Score=93.30 Aligned_cols=275 Identities=14% Similarity=0.092 Sum_probs=190.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC-----EEEEEEHH----HHHCCHHHHHHHHH-CC-CCCCCCEEEEEE Q ss_conf 847999569965899999999997335666773-----07762088----96418999999871-78-888882399984 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPF-----SLVVLNAL----EIQKNISTFWNEIN-ST-SLFSKKKIILIE 89 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~-----~~~~~~~~----e~~~d~~~l~~~~~-t~-slF~~~klIii~ 89 (352) .+.|||||+.---+-..+..+...+..+.--+. |.....|. +-..+++.+..... .. .--..-|+||++ T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlD 136 (346) T KOG0989 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILD 136 (346) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEE T ss_conf 86078668999867689999999855742355542431366001431006652379987502556567889863289974 Q ss_pred CCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCH Q ss_conf 7741-0457898898851056560799985265431-1356676543112101466442001358898875430256675 Q gi|254780804|r 90 NLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 (352) Q Consensus 90 ~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~-~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~ 167 (352) ++.. ..+...+|-..+++.+..+.+++....+++- ..+. ..+.-+.|.+....++..-++..+.++|+.+|+ T Consensus 137 Ecdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~------SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~ 210 (346) T KOG0989 137 ECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV------SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD 210 (346) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHH------HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCH T ss_conf 16453099999999998625466599997388564772877------467771288764478999999998885899787 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 67999996200123556899999975103444348-88887753101221114678887641023699999998531100 Q gi|254780804|r 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILIT-EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 (352) Q Consensus 168 ~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It-~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~ 246 (352) +|+.+++..++||++....-|+-+++ ++ ++|| .-.++.+.+...+..+-++++.+.++|..+..+...++...|.+ T Consensus 211 ~al~~I~~~S~GdLR~Ait~Lqsls~--~g-k~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~ 287 (346) T KOG0989 211 DALKLIAKISDGDLRRAITTLQSLSL--LG-KRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYS 287 (346) T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHC--CC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 89999999738728999999998610--47-6364588999986268789999999999706838899999999982467 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 014589999999999999998302568989999860899997689999999864998999999999999999953 Q gi|254780804|r 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 (352) Q Consensus 247 ~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K 321 (352) |..++++|....- .. -|.+..+... .. + ..+..+-+.-....++..+..|.+++.+++ T Consensus 288 ~~~lmsQLa~vi~-------~~--~g~~d~~k~~-~~----~---kl~~~~~~~~dg~~l~~~L~~L~~~~~ql~ 345 (346) T KOG0989 288 PLQLMSQLAEVIM-------DI--IGLSDEQKAQ-IS----L---KLFTRDKRLEDGEDLELALKDLLEAEKQLR 345 (346) T ss_pred HHHHHHHHHHHHH-------HC--CCCCHHHHHH-HH----H---HHHHCCCHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999987-------05--5656178999-99----9---997026122001258999999999899974 No 36 >PRK13342 recombination factor protein RarA; Reviewed Probab=99.44 E-value=6.1e-10 Score=84.85 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=178.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH-HHCCHHHHHHHHHCCCCCCCCE Q ss_conf 378875321001013847999569965899999999997335666773077620889-6418999999871788888823 Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEINSTSLFSKKK 84 (352) Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e-~~~d~~~l~~~~~t~slF~~~k 84 (352) ....|++..++....+ .+|||+.---+...++.|.+.... ....+.+.. -..|...+++.+.. ...+.+. T Consensus 24 ~~~~L~~~i~~~~~~s--~Il~GPPG~GKTTlA~iiA~~~~~------~f~~lnA~~~gv~dir~ii~~a~~-~~~~~~t 94 (417) T PRK13342 24 PGKPLRRMIEAGRLSS--MILWGPPGTGKTTLARIIAGATDA------EFEALSAVTSGVKDLREVIEEAKQ-SRLGRRT 94 (417) T ss_pred CCHHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEEECCCCCHHHHHHHHHHHHH-HHCCCCE T ss_conf 9719999997699975--998896999899999999998689------889961410388999999999886-3148965 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--- Q ss_conf 999847741-0457898898851056560799985265431135667654311210146644200135889887543--- Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI--- 160 (352) Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~--- 160 (352) +++|+...- +|...+.|..++++ .+++++-+.--.+...+...+ ...+..+.+.+++..++...++..+.. T Consensus 95 ilfiDEIHRfnK~QQD~LLp~vE~---g~iiLIgATTENP~f~in~aL--lSRc~vf~l~~L~~~di~~iL~ral~~e~~ 169 (417) T PRK13342 95 ILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL--LSRAQVFELKPLSEEDLEQLLKRALEDERG 169 (417) T ss_pred EEEEECHHHCCHHHHHHHHHHHHC---CCEEEEEECCCCCHHHCCHHH--HHHHHHEECCCCCHHHHHHHHHHHHHHHHC T ss_conf 999978200588999999875112---656999741579225348989--856570020589999999999999987743 Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC------C----CHHHHHHHHHHH Q ss_conf --0256675679999962001235568999999751034443488888775310122------1----114678887641 Q gi|254780804|r 161 --GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV------L----YIEEIINATIQG 228 (352) Q Consensus 161 --~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~------~----~if~L~dai~~~ 228 (352) .++.++++|+.+|++.++||.+.+-|-||-+..-..+...||.++|..++....- . .+..|..++-.. T Consensus 170 ~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGS 249 (417) T PRK13342 170 LGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQRRAARYDKDGDEHYDLISALHKSIRGS 249 (417) T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 37887769999999998149859999999999985258997348999999984410357778634789999999985169 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999 Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352) Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352) |...|+.++.+++..|++|..|. |+|+.+... +.|..++....- .....+++.+.+.++.+- T Consensus 250 DpdAAlyyLarml~~GEDp~~Ia-------RRLii~AsE-DIGlAdP~al~~----------a~~a~~a~~~iG~PE~~i 311 (417) T PRK13342 250 DPDAALYYLARMLEAGEDPLFIA-------RRLVIIASE-DIGLADPNALQV----------AVAAADAVERLGMPEGRI 311 (417) T ss_pred CCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHH-HHCCCCHHHHHH----------HHHHHHHHHHHCCHHHHH T ss_conf 95489999999997599979999-------999998854-403678789999----------999999999858778899 Q ss_pred HHH Q ss_conf 999 Q gi|254780804|r 309 TLH 311 (352) Q Consensus 309 ~l~ 311 (352) ++. T Consensus 312 ~La 314 (417) T PRK13342 312 ALA 314 (417) T ss_pred HHH T ss_conf 999 No 37 >PRK04195 replication factor C large subunit; Provisional Probab=99.43 E-value=2.9e-10 Score=86.96 Aligned_cols=200 Identities=22% Similarity=0.225 Sum_probs=140.9 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHH--HCCHHHHH-HHHHCCCCCC-CCEEEEEECCCCH-- Q ss_conf 8479995699658999999999973356667730776208896--41899999-9871788888-8239998477410-- Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI--QKNISTFW-NEINSTSLFS-KKKIILIENLSTE-- 94 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~--~~d~~~l~-~~~~t~slF~-~~klIii~~~~~~-- 94 (352) +..+||||+.---+...+..+.+.++ +++..+++.+. ..+...+. ....+.|+|+ .+|+|+++++... T Consensus 40 ~k~lLL~GPpGvGKTT~a~~lAk~~g------~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~ 113 (403) T PRK04195 40 KKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHG 113 (403) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC T ss_conf 74699889399879999999999849------985997710114789999999987606887788734999634344572 Q ss_pred ---HHHHHHHHHHHHCCCCCEEEEEEECCC-CCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH Q ss_conf ---457898898851056560799985265-4311-35667654311210146644200135889887543025667567 Q gi|254780804|r 95 ---KKVLDCLEEIIIKNICNHIIIIKSNEI-KKNN-TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 (352) Q Consensus 95 ---k~~~~~l~~~~~~~~~~~~li~~a~~l-~k~~-kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a 169 (352) ......|..++.+.. ..+|+.+.+. ++.. .++ ..+..+.|.++...++...++..++++|+++++++ T Consensus 114 ~~d~gg~~al~~~ik~s~--~PiIli~Nd~~~~~~~~lr------s~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~a 185 (403) T PRK04195 114 NADRGGVRAILEIIKKAK--NPIILTANDPYDPSLRPLR------NACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEA 185 (403) T ss_pred HHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHH------HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 444799999999985488--7089982684556717799------76612217994999999999999997699999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 99999620012355689999997510344434888887753101221114678887641-0236999999 Q gi|254780804|r 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLAD 238 (352) Q Consensus 170 ~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~-~~~~a~~~l~ 238 (352) ++.+++.++||++.+.|.|+-++ .+.+.++.+++.. .....+.++|+.++.++.+ +..+|...+. T Consensus 186 L~~Ia~~s~GDlR~aIN~LQ~~~---~~~~~~~~~~~~~-~~rd~~~~if~~~~~if~~~~~~~a~~~~~ 251 (403) T PRK04195 186 LREIAERSGGDLRSAINDLQAIA---EGGGRITLDDVKT-GERDREESIFEALDAVFKSRNYDQALEASY 251 (403) T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---CCCCCCCHHHHHH-HCCCCCCCHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999987973999999999997---4899775666664-135231438999999975698999999885 No 38 >PRK08058 DNA polymerase III subunit delta'; Validated Probab=99.40 E-value=7.6e-09 Score=77.60 Aligned_cols=287 Identities=15% Similarity=0.150 Sum_probs=179.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--------------------CCCCCEEEEEEHHHH-HC Q ss_conf 788753210010138479995699658999999999973356--------------------667730776208896-41 Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--------------------YHDPFSLVVLNALEI-QK 65 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~--------------------~~~~~~~~~~~~~e~-~~ 65 (352) .+.+++.-.+..++|. |||+|++-.-+...+..+.+.+.-. .+.++-...=++..+ .+ T Consensus 15 ~~~L~~~i~~~rl~HA-~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~i~id 93 (329) T PRK08058 15 VKMLQNSIAKNRLAHA-YLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAPDGQSIKKD 93 (329) T ss_pred HHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHH T ss_conf 9999999985996615-655789998899999999999739999999988788899998769999767745661407799 Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCC Q ss_conf 89999998717888888239998477410-457898898851056560799985265431135667654-3112101466 Q gi|254780804|r 66 NISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143 (352) Q Consensus 66 d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~ 143 (352) ++..+.+.+...|+-|++|++||.++... .....+|...++.||+++++|+.+.+..+ ...+ ...+..+++. T Consensus 94 qiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~~~~------lLpTI~SRCq~i~f~ 167 (329) T PRK08058 94 QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTENKHQ------ILPTILSRCQVVEFR 167 (329) T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECCHHH------HHHHHHHCCEEEECC T ss_conf 99999999643875788679997347762999999999986468978679987299666------436886314256588 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 44200135889887543025667567999996200123556899999975103444348888877531012211146788 Q gi|254780804|r 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 (352) Q Consensus 144 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~d 223 (352) |+...++..|+.+ .| ++++....++... ++.... + .+ ..+. ...+. ...+.++.. T Consensus 168 ~~~~~~i~~~L~~----~~--i~~~~a~l~a~~~-gs~~~A---~---~l-~~~~---~~~~~--------~~~~~~~~~ 222 (329) T PRK08058 168 PLPPESLIQRLQE----EG--ISESLATLLAQLT-NSVEEA---L---AL-SEDD---WFAQA--------RALVIKLYE 222 (329) T ss_pred CCCHHHHHHHHHH----CC--CCHHHHHHHHHHC-CCHHHH---H---HH-HCCH---HHHHH--------HHHHHHHHH T ss_conf 9999999999998----79--9989999999878-999999---9---88-4261---58999--------999999999 Q ss_pred HHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 8764102369999999853---1100014589999999999999998302568989999860899997689999999864 Q gi|254780804|r 224 ATIQGKIYNAIMLADFFLA---SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 (352) Q Consensus 224 ai~~~~~~~a~~~l~~l~~---~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~ 300 (352) .+..++....+..-+.+.. .......++..+...||.++..+. |.+.. . ++....+.+.+.+++ T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~-----~~~~~-~-------~~~d~~~~l~~~a~~ 289 (329) T PRK08058 223 ALHKGDLLSFVFVQTKWMPLFKEKDQQQLGLDLLLLIYRDLLYVQL-----GEEDR-L-------VFREQKEELQQLALS 289 (329) T ss_pred HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC-----CCCCH-H-------HCHHHHHHHHHHHHC T ss_conf 9976889999999999998701889999999999999999998741-----75200-1-------179999999999853 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 998999999999999999953289998999999999999 Q gi|254780804|r 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352) Q Consensus 301 ~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352) |+...+.+++..+.++...++. ..+.+..++.++++|. T Consensus 290 ~~~~~l~~~~~~i~e~~~~l~~-N~N~~L~lE~lll~L~ 327 (329) T PRK08058 290 YSQQQIVAALELILEAKRRLNS-NVNFQLVMEQLVLRLQ 327 (329) T ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH T ss_conf 9999999999999999999985-5899999999999642 No 39 >PRK07940 DNA polymerase III subunit delta'; Validated Probab=99.36 E-value=2.5e-09 Score=80.78 Aligned_cols=296 Identities=11% Similarity=0.061 Sum_probs=179.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC-------------------CCCEEEEEEHHHH-HCCHHHHHHHHHCCC Q ss_conf 13847999569965899999999997335666-------------------7730776208896-418999999871788 Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYH-------------------DPFSLVVLNALEI-QKNISTFWNEINSTS 78 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~-------------------~~~~~~~~~~~e~-~~d~~~l~~~~~t~s 78 (352) +.|. |||+|++---+...+..+.+.+.-+.. .++....=++..+ .+++..+.+.+...| T Consensus 38 ~~HA-yLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p 116 (395) T PRK07940 38 MTHA-WLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRP 116 (395) T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC T ss_conf 6603-763689987889999999999669999999998787899987689987189826877688999999999985273 Q ss_pred CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 8888239998477410-457898898851056560799985265431135667654-31121014664420013588988 Q gi|254780804|r 79 LFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEE 156 (352) Q Consensus 79 lF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~ 156 (352) .-|.+|++||+++... ......|.+.++.||+++++|+.+.+..+ +..+ ...+..++|.++....+.+|+.+ T Consensus 117 ~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~~------llpTI~SRcq~~~f~~~~~~~i~~~L~~ 190 (395) T PRK07940 117 TTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVED------VLPTIRSRCRHVALRTPSVEAVADVLVR 190 (395) T ss_pred CCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH------HHHHHHHHHEECCCCCCCHHHHHHHHHH T ss_conf 0379559998077874899999999852178888699987399787------4468874400023799999999999987 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHCCC-CCC---------CCHHHHHHHHHCCC Q ss_conf 7543025667567999996200123556------------8999999751034-443---------48888877531012 Q gi|254780804|r 157 SLLIGQKSISKEAKQILLANLGGDRIAS------------RNELQKLSSYCLE-DIL---------ITEQHVKDIICDTH 214 (352) Q Consensus 157 ~~~~~g~~i~~~a~~~L~~~~g~d~~~l------------~~EleKL~ly~~~-~~~---------It~~dI~~~v~~~~ 214 (352) . ..++++.+..++...+++.... ..++-.+..-..+ ..- ...+++........ T Consensus 191 ~-----~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~~~~~~al~~a~~Ll~~~~~~~~~~~~~~d 265 (395) T PRK07940 191 R-----DGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRLARVSDAVAAAEELVKAAEAEAKALTAERD 265 (395) T ss_pred C-----CCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0-----19998999999998089889999980688899999999999997037168999999999999999999888776 Q ss_pred CCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 211146788876410236--------999999985311---------000145899999999999999983025689899 Q gi|254780804|r 215 VLYIEEIINATIQGKIYN--------AIMLADFFLASK---------MPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 (352) Q Consensus 215 ~~~if~L~dai~~~~~~~--------a~~~l~~l~~~g---------~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~ 277 (352) +....++..++..+...+ ....+..+.... ...-.+|..+..+||.++.++. |.+. T Consensus 266 ~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld~~L~~L~~~~RD~L~~~~-----g~~~-- 338 (395) T PRK07940 266 EAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALDRALIDLAGLYRDVLLVQL-----GAGV-- 338 (395) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCC-- T ss_conf 899999999843443330133211778999999999876677777777899999999999999999860-----8973-- Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 998608999976899999998649989999999999999999532899989999999999999 Q gi|254780804|r 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352) Q Consensus 278 ~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352) +-+++-..+.+..++++++..++.+++..+.++...++. ...+...++.++++|.+ T Consensus 339 ------~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~-Nvnp~L~LE~lll~L~q 394 (395) T PRK07940 339 ------GLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAV-NVKPLLAVEAMVAALRQ 394 (395) T ss_pred ------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH T ss_conf ------555866999999999749999999999999999999884-59979999999999864 No 40 >PRK05707 DNA polymerase III subunit delta'; Validated Probab=99.31 E-value=1.2e-08 Score=76.19 Aligned_cols=297 Identities=13% Similarity=0.102 Sum_probs=176.8 Q ss_pred CCCCCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--------------------CCCCCEEEEE Q ss_conf 976333--788753210010138479995699658999999999973356--------------------6677307762 Q gi|254780804|r 1 MATIES--HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--------------------YHDPFSLVVL 58 (352) Q Consensus 1 ~~~i~~--~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~--------------------~~~~~~~~~~ 58 (352) |+-||+ .+..+.+-....++|. |||+|++---+...+..+.+.+.-. .+.++-...- T Consensus 1 ~~~~yPW~~~~w~~l~~~~rl~HA-~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~p 79 (328) T PRK05707 1 MAEIYPWQQSLWQQLAGRGRHAHA-YLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEP 79 (328) T ss_pred CCCCCCCCHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC T ss_conf 986766748999999977982204-6447999867999999999998489999989998888999987589998799842 Q ss_pred EHH--HH-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH Q ss_conf 088--96-4189999998717888888239998477410-4578988988510565607999852654311356676543 Q gi|254780804|r 59 NAL--EI-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 (352) Q Consensus 59 ~~~--e~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~ 134 (352) ++. .+ .+.+..+.+.+...|..|++|+++|.++... .....+|-+.++.||+++++|+.+....+=- -.+ . T Consensus 80 e~~~~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lL---pTI--~ 154 (328) T PRK05707 80 EEADKPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLL---PTI--K 154 (328) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCH---HHH--H T ss_conf 66677697999999999983176678957999502877389999999998507898759998609934482---588--7 Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC Q ss_conf 11210146644200135889887543025667567999996200123556899999975103444348888877531012 Q gi|254780804|r 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352) Q Consensus 135 ~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352) ..+..+.+.+++..++..|+.+... ..+.+.+..++...+|...... .+...+. .+.-..+ T Consensus 155 SRCq~~~~~~p~~e~~~~~L~~~~~----~~~~~~a~~ll~la~G~p~~A~------~l~~~~~----~~~r~~~----- 215 (328) T PRK05707 155 SRCQQLACPLPSNEPSLQWLQQALP----ESDAEERIELLTLAAGSPLRAL------QLHAQGV----REQRARV----- 215 (328) T ss_pred HCCEEEECCCCCHHHHHHHHHHHCC----CCCHHHHHHHHHHCCCCHHHHH------HHHCCCH----HHHHHHH----- T ss_conf 4141334899899999999997556----5578999999997499999999------8748668----9999999----- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH Q ss_conf 21114678887641023699999998531100014589999999999999998302568989999860899997689999 Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352) Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352) .+.+..+..+.. .......... +.+...++..+...++.++.++... +.... ++.-..+.+ T Consensus 216 ----~~~l~~l~~~~~-~~~~~~~~~~--k~~~~~~l~~l~~~~~D~l~~~~~~-----~~~~l-------~~~d~~~~i 276 (328) T PRK05707 216 ----VDGVKKLLKQQQ-SASQLAESWL--KVPLPLLFDWFCDWAHLILRYQLTQ-----DEEGL-------GLADMRKVL 276 (328) T ss_pred ----HHHHHHHHHCCC-CHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHC-------CCHHHHHHH T ss_conf ----999999983878-8999999975--0579999999999999999998259-----71410-------478899999 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH Q ss_conf 99986499899999999999999995328-999899999999999996 Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQT 341 (352) Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~~ 341 (352) +..+++++..++..++..+.++-..+... ..+.+.+++.++++.++. T Consensus 277 ~~la~~~s~~~l~~~~~~l~~~r~~l~~~~NvN~~L~lE~Lll~~~~L 324 (328) T PRK05707 277 QYLAQKSPQAKVLALQQWLLEQRQKVLGKANLNRVLLLEALLVQWAGL 324 (328) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 999872999999999999999999986369988899999999998574 No 41 >pfam12169 DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. Probab=99.17 E-value=1.8e-09 Score=81.68 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=113.2 Q ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 48888877531012211146788876410236999999985311000145899999999999999983025689899998 Q gi|254780804|r 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 (352) Q Consensus 201 It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~ 280 (352) ||.++|.+++|......+++|+++++.||..+++..++++...|.+|..++..+..++|.+..++..... . .. T Consensus 1 It~~~V~~mLG~~~~~~l~~L~~aI~~~d~~~~l~~l~~l~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~----~-~~-- 73 (143) T pfam12169 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHLLTRLKIAPDA----A-DD-- 73 (143) T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC----C-CC-- T ss_conf 9799999984899889999999999828999999999999987989999999999999999999867630----0-01-- Q ss_pred HHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 608999976899999998649989999999999999999532899989999999999999631 Q gi|254780804|r 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 281 ~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352) +.+-....+.+.++++.|+.+.+.+++..+.++...+|.+ ..+...++-+++++|..+. T Consensus 74 ---~~~~~~~~~~l~~~a~~~~~~~L~~~~qil~~~~~el~~s-~~p~~~lEm~llRl~~~~~ 132 (143) T pfam12169 74 ---LSLPEEERERIAALAKKLSPEVLSRLWQMLLKGIEEVKNA-PDPRQAAEMALLRLAYAAD 132 (143) T ss_pred ---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCC T ss_conf ---2257788999999986067999999999999999997428-8869999999999998375 No 42 >PRK06871 DNA polymerase III subunit delta'; Validated Probab=99.10 E-value=7.9e-07 Score=64.26 Aligned_cols=284 Identities=9% Similarity=0.012 Sum_probs=162.8 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC--------------------CCCCEEEEE-EHHHHH-CC Q ss_conf 87532100101384799956996589999999999733566--------------------677307762-088964-18 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY--------------------HDPFSLVVL-NALEIQ-KN 66 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~--------------------~~~~~~~~~-~~~e~~-~d 66 (352) +.+....+ ..+| -|||+|++-.-+...+..+.+.+.-.. +.++-...- +++.+. ++ T Consensus 13 l~~~~~~~-r~~H-A~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~ 90 (324) T PRK06871 13 ITQTFLQG-RGHH-ALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQ 90 (324) T ss_pred HHHHHHCC-CCCE-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHH T ss_conf 99999869-9543-787689999789999999999982899999998888989999973899987998467888788999 Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999998717888888239998477410-457898898851056560799985265431135667654311210146644 Q gi|254780804|r 67 ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352) Q Consensus 67 ~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352) +..+.+.+...|.-|+.|+++|.++... .....+|.+.++.||+++++|+.+....+= -..+ ...+..+.+.++ T Consensus 91 IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~~~~l---l~TI--~SRCq~~~~~~p 165 (324) T PRK06871 91 VREINEKVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSASL---LATI--YSRCQTWLIHVP 165 (324) T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC---CCHH--HHCCCCEECCCC T ss_conf 99999998646220596699975888857999999999833898783899987870103---2408--626612008994 Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 20013588988754302566756799999620012355689999997510344434888887753101221114678887 Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352) Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352) +..+...|+.+.. ..+..++...+...+|....... +...+.-..-.+-+..+.......+.+.++. T Consensus 166 ~~~~~~~wL~~~~-----~~~~~~~~~al~~~~g~pl~A~~------~~~~~~~~~r~~~~~~l~~~~~~~~~~~ll~-- 232 (324) T PRK06871 166 EEQIALDWLQAQS-----SGEIQEIQTALRINYGRPLLALT------FLEQGLLEQRKTFLRQFWLFYRRRSPLELLP-- 232 (324) T ss_pred CHHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCHHHHHH------HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH-- T ss_conf 9999999999746-----88729999999976998799999------8687799999999999999971689999999-- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH Q ss_conf 64102369999999853110001458999999999999999830256898999986089999768999999986499899 Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 (352) Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~ 305 (352) .+ ..+.....+.-|...++..++.+. |..... ++.-..+.+.+.+.++|... T Consensus 233 -------------~~--~k~~~~~~L~wL~~~l~D~lk~k~-----g~~~~~--------in~D~~~~i~~la~~~s~~~ 284 (324) T PRK06871 233 -------------LF--DKEKVLQQLDWLLAFLSDALKAKL-----DIDSGW--------INQDLGRGILQFSQQQSAQG 284 (324) T ss_pred -------------HH--CCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCE--------ECHHHHHHHHHHHHHCCHHH T ss_conf -------------97--514588899999999999999844-----887560--------75889999999998659999 Q ss_pred HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH Q ss_conf 999999999999995328-99989999999999999 Q gi|254780804|r 306 VRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQ 340 (352) Q Consensus 306 l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~ 340 (352) +.+.+..+.++-.++... +.+.+.++.+.++++.. T Consensus 285 L~~~~~~l~~~r~~L~~~~~lN~eLll~~~L~~l~~ 320 (324) T PRK06871 285 LLKAIQIMQKVRSDLLQINAVNQELILLDGLTRLVT 320 (324) T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 999999999999998445787899999999999999 No 43 >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Probab=99.07 E-value=2.6e-07 Score=67.40 Aligned_cols=275 Identities=13% Similarity=0.077 Sum_probs=171.1 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH-HHCCHHHHHHHHH-CCCCCCC Q ss_conf 3378875321001013847999569965899999999997335666773077620889-6418999999871-7888888 Q gi|254780804|r 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEIN-STSLFSK 82 (352) Q Consensus 5 ~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e-~~~d~~~l~~~~~-t~slF~~ 82 (352) -....++...++....+ .+|||+.---+...+..|.+.... ....+.+.. -..|...+++++. ...+++. T Consensus 38 g~g~~Lrr~i~~~~~~S--~Il~GPPGtGKTTLA~iIA~~t~~------~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~ 109 (726) T PRK13341 38 GEGRLLRRAIKADRVGS--LILYGPPGVGKTTLARIIANHTRA------HFSSLNAVLAGVKDLRAEVDAAKERLERHGK 109 (726) T ss_pred CCCCHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEEECCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 89828999997699982--788897999999999999887488------6799856203779999999999999874599 Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH- Q ss_conf 23999847741-0457898898851056560799985265431135667654311210146644200135889887543- Q gi|254780804|r 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI- 160 (352) Q Consensus 83 ~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~- 160 (352) +.+++|+...- +|...+.|..++++ ++++++-+.--.+.-.+.+.+ ...+..+.+.+++..++...+...+.. T Consensus 110 ~tILFIDEIHRfNK~QQD~LLp~vE~---G~i~LIGATTENP~F~vn~AL--lSR~~vf~L~~L~~~dl~~il~rAl~d~ 184 (726) T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVEN---GTVTLIGATTENPYFEVNKAL--VSRSRLFRLKSLEDEDLHQLLKRALQDK 184 (726) T ss_pred CEEEEEECHHHCCHHHHHHHHHHHCC---CEEEEEEECCCCCCEEECHHH--HHHCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 65999862542588789987888606---838999704789743642988--8323466743899999999999998767 Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHC------CCCCC----HHH Q ss_conf ------0256675679999962001235568999999751034----443488888775310------12211----146 Q gi|254780804|r 161 ------GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE----DILITEQHVKDIICD------THVLY----IEE 220 (352) Q Consensus 161 ------~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~----~~~It~~dI~~~v~~------~~~~~----if~ 220 (352) .++.++++|+++|+..++||.+.+-|-||-....... ...|+.+.++..+.. ....+ +.. T Consensus 185 ~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~~~~~~~~~~YDk~GD~HYd~iSA 264 (726) T PRK13341 185 ERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAEESIQQRAVLYDKEGDAHFDTISA 264 (726) T ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 43256678775989999999975973999999999999707457688344359999999856660568775178899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC Q ss_conf 78887641023699999998531100014589999999999999998302568989999860899997689999999864 Q gi|254780804|r 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 (352) Q Consensus 221 L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~ 300 (352) |+.++-..|...|+.++.+++..|++|..| +|+|+.+.. -+.|..++.... ......+++.+ T Consensus 265 fiKSiRGSDpDAALywLARMLeaGEDP~fI-------aRRLii~As-EDIGlAdP~Al~----------va~aa~~A~e~ 326 (726) T PRK13341 265 FIKSLRGSDPDAALYWLARMVEAGEDPRFI-------FRRMLIAAS-EDVGLADPQALV----------VVEACAAAFER 326 (726) T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHH-HHCCCCCHHHHH----------HHHHHHHHHHH T ss_conf 999865489678999999999759988999-------999999998-402366847999----------99999999997 Q ss_pred CCHHHHHHHH Q ss_conf 9989999999 Q gi|254780804|r 301 WNKNLVRETL 310 (352) Q Consensus 301 ~s~~~l~~~l 310 (352) .+.++-+-.+ T Consensus 327 iG~PE~ri~L 336 (726) T PRK13341 327 VGLPEGLYPL 336 (726) T ss_pred HCCHHHHHHH T ss_conf 4791779999 No 44 >PRK07993 DNA polymerase III subunit delta'; Validated Probab=99.07 E-value=1.6e-06 Score=62.29 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=166.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---C-----------------CCCEEEEEE--HHHHH Q ss_conf 7887532100101384799956996589999999999733566---6-----------------773077620--88964 Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---H-----------------DPFSLVVLN--ALEIQ 64 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~-----------------~~~~~~~~~--~~e~~ 64 (352) +++++....+ .++| -|||.|++-.-+...+..+.+.+.-.. + .++-...-+ +..+. T Consensus 12 ~~l~~~~~~~-rl~H-A~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~ 89 (334) T PRK07993 12 EKLVGSYQAG-RGHH-ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG 89 (334) T ss_pred HHHHHHHHCC-CCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCC T ss_conf 9999999859-8104-6754799998899999999999818999999999999789998668999847753422345599 Q ss_pred -CCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf -189999998717888888239998477410-457898898851056560799985265431135667654311210146 Q gi|254780804|r 65 -KNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 (352) Q Consensus 65 -~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~ 142 (352) +.+..+.+.+...|..|++|+|+|.++... .....+|-+.++.||+++++|+.+.....= --.+ ...+..+.+ T Consensus 90 IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEPp~~t~~iL~t~~~~~l---LpTI--~SRCq~~~~ 164 (334) T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEKTWFFLACREPARL---LATL--RSRCRLHYL 164 (334) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CCHH--HHHCCCCCC T ss_conf 99999999998436656994799976677759999999998612799884999866985657---2388--752304158 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHH Q ss_conf 64420013588988754302566756799999620012355689999997510344434888887753101221114678 Q gi|254780804|r 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 (352) Q Consensus 143 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~ 222 (352) .+++...+..|+.+. ...+++.+...+...+|.......-++ .+. .+..+.++ ..+. T Consensus 165 ~~~~~~~~~~wL~~~-----~~~~~~~~~~al~la~Gspl~A~~l~~------~~~----~~~r~~l~--------~~l~ 221 (334) T PRK07993 165 APPPEQYALTWLSRE-----VTMSQEALLAALRLSAGAPGAALALLQ------PER----WQQREALC--------QALA 221 (334) T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHHHCCCCHHHHHHHHC------CCH----HHHHHHHH--------HHHH T ss_conf 997999999999873-----689889999999984998999999825------658----99999999--------9999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC Q ss_conf 88764102369999999853110001458999999999999999830256898999986089999768999999986499 Q gi|254780804|r 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 (352) Q Consensus 223 dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s 302 (352) +.+-.++. +..+..+-. ......+..+...++.+++.+ .|.. .. ++.-..+.+...+++++ T Consensus 222 ~~l~~~d~---~~ll~~l~~--~~~~~~L~wl~~ll~D~l~~~-----~~~~--~l-------~n~D~~~~i~~la~~~s 282 (334) T PRK07993 222 YSLPSGDW---YSLLPALNH--EQAPARLHWLATLLMDALKRQ-----HGAA--QV-------TNVDQPPLVAQLANHLS 282 (334) T ss_pred HHHCCCCH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----CCCC--CE-------ECHHHHHHHHHHHHCCC T ss_conf 98703679---999999716--348999999999999999986-----0853--01-------48779999999985099 Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH Q ss_conf 899999999999999995328-9998999999999999963 Q gi|254780804|r 303 KNLVRETLHKIDHRIHLARKK-KYLEKNIIFQTILYIAQTA 342 (352) Q Consensus 303 ~~~l~~~l~~L~~~d~~~K~~-~~~~~~il~~~ll~l~~~a 342 (352) ...+.+.+..+.++-..++.. +.+.+.+++++++++.+.- T Consensus 283 ~~~L~~~~~~i~~~r~~L~~~~NlN~qLlLE~lll~~~~~l 323 (334) T PRK07993 283 PARLQAILGDVCHCREQLLSVTGVNRELLLTDLLLRIEHYL 323 (334) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 99999999999999999752689999999999999999973 No 45 >PRK08699 DNA polymerase III subunit delta'; Validated Probab=99.03 E-value=2.7e-06 Score=60.72 Aligned_cols=273 Identities=11% Similarity=0.080 Sum_probs=160.3 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---------------------CCCCEEEEE------EHH---HH-HCC Q ss_conf 01384799956996589999999999733566---------------------677307762------088---96-418 Q gi|254780804|r 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITY---------------------HDPFSLVVL------NAL---EI-QKN 66 (352) Q Consensus 18 ~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---------------------~~~~~~~~~------~~~---e~-~~d 66 (352) .++|. |||+|++-.-+...+..+.+.+.=.. +.++-...= +|. +| .+. T Consensus 19 rl~HA-~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idq 97 (325) T PRK08699 19 RRPNA-WLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDA 97 (325) T ss_pred CCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHH T ss_conf 50117-97579999789999999999982899988899898888899986599999688513445300166556676999 Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999998717888888239998477410-457898898851056560799985265431135667654311210146644 Q gi|254780804|r 67 ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352) Q Consensus 67 ~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352) +..+.+.+...|.-|++|+|+|+.+... ......|.+.++.||+++++|+.+.+... +-..+ ...+..+++.++ T Consensus 98 iR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~---llpTI--~SRc~~~~~~~p 172 (325) T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADK---VLPTI--KSRCRKMVLPAP 172 (325) T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---CCCHH--HHCCCCCCCCCC T ss_conf 9999999710865689469998577775899999999984178888489998798464---62339--864542108995 Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 20013588988754302566756799999620012355689999997510344434888887753101221114678887 Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352) Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352) +..++..|+.+. |+ + ++...|+. .|+-.. +..+ . ++.... -++++.+ T Consensus 173 ~~~~~~~~L~~~----gv--~-~~~~~La~-~~gapl-----------~~~~-~-----~~~~~r--------~~ll~~L 219 (325) T PRK08699 173 SHEEALAYLRER----GV--A-EPEERLAF-HSGAPL-----------FDEE-D-----ELRALR--------AKLLDIL 219 (325) T ss_pred CHHHHHHHHHHC----CC--C-CHHHHHHH-CCCCCH-----------HHHC-C-----HHHHHH--------HHHHHHH T ss_conf 999999999974----89--7-67899976-599811-----------2317-4-----369999--------9999997 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH Q ss_conf 64102369999999853110001458999999999999999830256898999986089999768999999986499899 Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 (352) Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~ 305 (352) ..++....+.....+..+..+...++..+.+.++.|+... .++. +-+|+..++.+...+++++..+ T Consensus 220 ~~~~~~~~l~~a~~~~k~~~~l~~~l~wlq~wl~DL~~~~----~~~~----------~~y~~d~~~~L~~lA~~~~~~~ 285 (325) T PRK08699 220 AEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCL----QHMK----------PVYYPAYEDRLLQTASGFRPRN 285 (325) T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HCCC----------CCCCHHHHHHHHHHHHHCCHHH T ss_conf 2644055999999987565848999999999999999998----2698----------5438768999999987089999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999995328999899999999999996310 Q gi|254780804|r 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 (352) Q Consensus 306 l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~ 344 (352) +-..+..+.++-.... .+.+..-.++.+++.-.+..+- T Consensus 286 L~~~~~~l~~~~r~~~-~nlN~~L~lE~LLl~y~~l~~~ 323 (325) T PRK08699 286 VFAAEDMLKQLAPYGF-HTLNVKMQIEHLLINYLELKKE 323 (325) T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998545-9987899999999999988751 No 46 >PRK06964 DNA polymerase III subunit delta'; Validated Probab=98.95 E-value=4.7e-06 Score=59.10 Aligned_cols=269 Identities=11% Similarity=0.119 Sum_probs=159.3 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHCCC----C-----------------CCCCEEEEEE----------------- Q ss_conf 0138479995699658999999999973356----6-----------------6773077620----------------- Q gi|254780804|r 18 FLSHFVFIFYGSDKGLIFELINQFKKNISIT----Y-----------------HDPFSLVVLN----------------- 59 (352) Q Consensus 18 ~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~----~-----------------~~~~~~~~~~----------------- 59 (352) .++|. |||+|++---+...+..+.+.+.=+ . +.++-.+.=+ T Consensus 19 rl~HA-~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~ 97 (342) T PRK06964 19 RWPHA-LLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAAD 97 (342) T ss_pred CHHEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHH T ss_conf 71305-76579998679999999999983899998889786777788886279997455340021022333210010111 Q ss_pred -----------HHHHH-CCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH Q ss_conf -----------88964-189999998717888888239998477410-45789889885105656079998526543113 Q gi|254780804|r 60 -----------ALEIQ-KNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 (352) Q Consensus 60 -----------~~e~~-~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~k 126 (352) +++|. +.+..+.+.+.-.|..|++|+|+|.++... ......|.+.++.||+++++|+.+..... T Consensus 98 ~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp~~~~~iL~~~~~~~--- 174 (342) T PRK06964 98 ADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGVVFLLVSARIDR--- 174 (342) T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH--- T ss_conf 22210123565564549999999999700754588449998277873899999999972379878489998699254--- Q ss_pred HHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 5667654-311210146644200135889887543025667567999996200123556899999975103444348888 Q gi|254780804|r 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 (352) Q Consensus 127 l~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~d 205 (352) +..+ ...+..+.+.+++...+..|+.+ .|+. ++...+. ..||..... + .+...+. .+. T Consensus 175 ---llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~lla-~a~G~p~~A---l---~l~~~~~----~~~ 233 (342) T PRK06964 175 ---LLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANALLA-EAGGAPLAA---L---ALASDEN----RPL 233 (342) T ss_pred ---CCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHHHHH-HCCCCHHHH---H---HHHCCCH----HHH T ss_conf ---8368876764302899599999999987----3986---3999998-809998999---9---8716735----999 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC Q ss_conf 87753101221114678887641023699999998531100014589999999999999998302568989999860899 Q gi|254780804|r 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 (352) Q Consensus 206 I~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p 285 (352) ... +++.+..+.....+...+.+ +..+.-.++..+.+.++.++.++. +|. +- T Consensus 234 ~~~------------~l~~L~~~~~~~~~~~ae~~--~k~~~~~~l~~l~~w~~DlL~~~~----~~~----------~~ 285 (342) T PRK06964 234 RDW------------TLGQLAAGAACDAFACGETL--QKLPVPAVLGWLQRWLYDLLAQRL----AGA----------PR 285 (342) T ss_pred HHH------------HHHHHHCCCCCCHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHH----CCC----------CC T ss_conf 999------------99998643325799999998--447899999999999999999982----598----------11 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 9976899999998649989999999999999999532899989999999999999 Q gi|254780804|r 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352) Q Consensus 286 ~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352) +|+.....+.+.+++++...+.+++..+.++-..+.. +.+...+++.++++..+ T Consensus 286 ~~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~-nvN~~L~lE~LlL~~~e 339 (342) T PRK06964 286 YFPAQRAALARCAAAADANAFARFAKAVTRQRAVENH-PLAARLVFEELFLGYRE 339 (342) T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH T ss_conf 2677999999988508999999999999999998629-98779999999999999 No 47 >PRK07471 DNA polymerase III subunit delta'; Validated Probab=98.94 E-value=6.1e-06 Score=58.38 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=166.4 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----------------------------CCEEEEE-- Q ss_conf 8753210010138479995699658999999999973356667----------------------------7307762-- Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----------------------------PFSLVVL-- 58 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----------------------------~~~~~~~-- 58 (352) .+...-.+-.++| -|||+|++---+...+..+.+.+...... .-.+..+ T Consensus 28 ~L~~a~~~grl~H-A~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~hpdl~~i~r 106 (363) T PRK07471 28 ALLDAYRSGRLHH-AWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAHGGLLTLER 106 (363) T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCEEEEEC T ss_conf 9999998599764-587679998188999999999985799977777678705312587772899995269998466762 Q ss_pred --EHHH------H-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH Q ss_conf --0889------6-4189999998717888888239998477410-4578988988510565607999852654311356 Q gi|254780804|r 59 --NALE------I-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 (352) Q Consensus 59 --~~~e------~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~ 128 (352) +.+. + .++...+...+...|.-|++|++||..+... ......|.+.++.||+++++|+.+....+ T Consensus 107 ~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~~~~----- 181 (363) T PRK07471 107 SWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHAPAR----- 181 (363) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH----- T ss_conf 001133321244539999999999724852489669998687873889999999972158988389986399777----- Q ss_pred HHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 67654-31121014664420013588988754302566756799999620012355689999997510344434888887 Q gi|254780804|r 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352) Q Consensus 129 k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352) +... ...+..+.|.|++..++..++.+ ..+...+++.+..++...+|+..... .++..+ +.--.+++. T Consensus 182 -llpTI~SRCq~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al------~l~~~~-~~~l~~~~~ 250 (363) T PRK07471 182 -LLPTIRSRCRKLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRAL------RLAGGD-GLALYQRTT 250 (363) T ss_pred -CHHHHHHHCCCCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHH------HHHCCC-HHHHHHHHH T ss_conf -7799997352425899599999999998---43899998999999997589999999------874798-599999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC Q ss_conf 753101221114678887641023699999998531100014-5899999999999999983025689899998608999 Q gi|254780804|r 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA-LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 (352) Q Consensus 208 ~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~-il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~ 286 (352) .++..... .|...+..+-+.+-..+.+... ++..+.+.++.+.+... .+.+. +.+ T Consensus 251 ~ll~~~~~------------~d~~~~~~lad~~a~~~~~~~~~~l~l~~~~l~~~~r~~~----~~~~~--------~~~ 306 (363) T PRK07471 251 ALLDTLPR------------LDRRALHALADAAAGGDRAAFALFLDLLDRWLARLARAGA----RNAGL--------PEA 306 (363) T ss_pred HHHHHCCC------------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--------CCC T ss_conf 99974767------------8999999999998168779999999999999999998752----27881--------001 Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 976899999998649989999999999999999532899989999999999999631 Q gi|254780804|r 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 287 ~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352) .+.+...+.+-+..-+...+.++...+.+.......-..+.+.++..++..+..+|+ T Consensus 307 ~~~E~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~a~ 363 (363) T PRK07471 307 VPGEAALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEAAR 363 (363) T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC T ss_conf 731799998608863089999999999999999986189889999999999999729 No 48 >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Probab=98.78 E-value=1.6e-06 Score=62.29 Aligned_cols=235 Identities=13% Similarity=0.133 Sum_probs=151.7 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHH Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741-045789889 Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLE 102 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~ 102 (352) -+|||+.---+...++.|.+..... ...++-+...- .|...+++++......|-+-+++|+...- .|...+.+. T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~-f~~~sAv~~gv----kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436) T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAA-FEALSAVTSGV----KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCH----HHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH T ss_conf 5777899988889999998761776-69951523467----999999999999872588349987225333744565510 Q ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHCCCC-----CCHHHHHHHHH Q ss_conf 885105656079998526543113566765431121014664420013588988--75430256-----67567999996 Q gi|254780804|r 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE--SLLIGQKS-----ISKEAKQILLA 175 (352) Q Consensus 103 ~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~--~~~~~g~~-----i~~~a~~~L~~ 175 (352) .++++ ++++++-+.--.+.-.+...+ -..+.+..+.|++..++...+.. .....|+. ++++|.++|+. T Consensus 126 p~vE~---G~iilIGATTENPsF~ln~AL--lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~ 200 (436) T COG2256 126 PHVEN---GTIILIGATTENPSFELNPAL--LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR 200 (436) T ss_pred HHHCC---CEEEEEECCCCCCCEEECHHH--HHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 33248---868999626789871403888--6110415651699899999999998654137776556688899999998 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC------CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2001235568999999751034443488888775310122------1114678----88764102369999999853110 Q gi|254780804|r 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV------LYIEEII----NATIQGKIYNAIMLADFFLASKM 245 (352) Q Consensus 176 ~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~------~~if~L~----dai~~~~~~~a~~~l~~l~~~g~ 245 (352) .++||.+.+-|-||-....+.+.+.++.++++.++..... ...++++ .++-..|...|+.++.+++..|+ T Consensus 201 ~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~Ge 280 (436) T COG2256 201 LSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGE 280 (436) T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 62861999988999999862777524799999998655205677763478999999986126883789999999996688 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 0014589999999999999998302568989 Q gi|254780804|r 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 (352) Q Consensus 246 ~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~ 276 (352) +|..|- |+|..+.. -+.+..++. T Consensus 281 Dp~yiA-------RRlv~~As-EDIGlAdP~ 303 (436) T COG2256 281 DPLYIA-------RRLVRIAS-EDIGLADPN 303 (436) T ss_pred CHHHHH-------HHHHHHHH-HHCCCCCHH T ss_conf 789999-------99999987-422578836 No 49 >PRK04132 replication factor C small subunit; Provisional Probab=98.77 E-value=2.7e-07 Score=67.30 Aligned_cols=198 Identities=15% Similarity=0.047 Sum_probs=143.7 Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 898898851056560799985265431135667654-3112101466442001358898875430256675679999962 Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) .+++......-..++.+++..+.. | |+++. ...|+.+.|.|+...++..-++..++.+|+++++++++.|+.. T Consensus 662 ~~~~~r~~~~~~~~~~~~~SCNYs---S---KIIePIQSRCavFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~ 735 (863) T PRK04132 662 YDITCHNDHSFIANGFVSHNCNYS---S---KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYV 735 (863) T ss_pred HHHHHHHHHHHHCCCEEEEECCCC---C---CCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 999987787642056179866760---4---0741665562478836899999999999999974997677899999997 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHH Q ss_conf 00123556899999975103444348888877531012211146788876410236999999985-31100014589999 Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFL 255 (352) Q Consensus 177 ~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~ 255 (352) .+|||+.+.|-|+--+ ++. +.||.+.|-.+++......+-++++.+++|+...|...+..++ ..|.++.-|+.++. T Consensus 736 aeGDMRkAIN~LQsaa--~~~-~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~~ll~~~GlS~~DII~~i~ 812 (863) T PRK04132 736 AEGDMRRAINVLQAAA--ALD-TKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMH 812 (863) T ss_pred CCCCHHHHHHHHHHHH--HCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 5674899999999998--616-9878889999708999899999999997299899999999999966969899999999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999999830256898999986089999768999999986499899999999999999995328999899999999 Q gi|254780804|r 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 (352) Q Consensus 256 ~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~l 335 (352) +....+ + ++...-..++..+.++|..+-. |..+..-+.-++ T Consensus 813 r~v~~l------------~--------------------------ipe~~kv~li~~ige~e~Rl~e-Ga~e~IQL~ALl 853 (863) T PRK04132 813 REVFNL------------P--------------------------IDEPKKVYLADKIGEYNFRLVE-GANEMIQLEALL 853 (863) T ss_pred HHHHHC------------C--------------------------CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHH T ss_conf 999617------------9--------------------------9878999999999766703314-888699999999 Q ss_pred HHHHHHHH Q ss_conf 99999631 Q gi|254780804|r 336 LYIAQTAC 343 (352) Q Consensus 336 l~l~~~a~ 343 (352) -.++...+ T Consensus 854 A~f~l~g~ 861 (863) T PRK04132 854 AQFTLMGK 861 (863) T ss_pred HHHHHHCC T ss_conf 99997357 No 50 >PRK09112 DNA polymerase III subunit delta'; Validated Probab=98.76 E-value=2.3e-05 Score=54.52 Aligned_cols=212 Identities=14% Similarity=0.091 Sum_probs=130.8 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------------CCCEEEE----EEH Q ss_conf 875321001013847999569965899999999997335666------------------------7730776----208 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------------DPFSLVV----LNA 60 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------------~~~~~~~----~~~ 60 (352) +.+..+.+ .++| -|||+|+.---+...+..+.+.+..... ..-++.. +|. T Consensus 35 L~~a~~~g-Rl~H-A~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~~i~r~~d~ 112 (352) T PRK09112 35 LAQAYREG-RLHH-ALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLLHLTRPFDE 112 (352) T ss_pred HHHHHHCC-CCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCH T ss_conf 99999849-9652-465358998089999999999986699866686556788878778999974899995655343220 Q ss_pred HH------H-HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHH Q ss_conf 89------6-4189999998717888888239998477410-45789889885105656079998526543113566765 Q gi|254780804|r 61 LE------I-QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 (352) Q Consensus 61 ~e------~-~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e 132 (352) .+ + .++...+.+.+...|.-|+.|++||+.+... ......|.+.++.||+++++|+.+....+ +.. T Consensus 113 k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~------ll~ 186 (352) T PRK09112 113 KTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGR------LLP 186 (352) T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH------CHH T ss_conf 21454335777999999998454886688069998187874699999999985348987489988699777------768 Q ss_pred H-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 4-311210146644200135889887543025667567999996200123556899999975103444348888877531 Q gi|254780804|r 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352) Q Consensus 133 ~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352) . ...+..+.|.|++..++...++......++. +++++..++...+|+.+.. |.++.++.-.| ..++..++. T Consensus 187 TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~A------l~L~~~~gl~i-~~~~~~ll~ 258 (352) T PRK09112 187 TIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKA------LLLLNYGGLEI-IDTVDQLLA 258 (352) T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHH------HHHHCCCHHHH-HHHHHHHHH T ss_conf 999743321488939899999999875126899-8799999998708998899------98744877999-999999980 Q ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHH Q ss_conf 01221---114678887641023699999 Q gi|254780804|r 212 DTHVL---YIEEIINATIQGKIYNAIMLA 237 (352) Q Consensus 212 ~~~~~---~if~L~dai~~~~~~~a~~~l 237 (352) . ... ..-.|.|++..++....+..+ T Consensus 259 ~-p~~d~~~~~~la~~~~~~~~~~~~~~~ 286 (352) T PRK09112 259 G-SGFDLPKAHALAGALSGRESEVQFDLF 286 (352) T ss_pred C-CCCCHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 8-999989999999998477747899999 No 51 >PRK07399 DNA polymerase III subunit delta'; Validated Probab=98.73 E-value=7.8e-06 Score=57.67 Aligned_cols=262 Identities=13% Similarity=0.096 Sum_probs=140.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC--------------CCCEEEE---------EEHHHH Q ss_conf 78875321001013847999569965899999999997335666--------------7730776---------208896 Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH--------------DPFSLVV---------LNALEI 63 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~--------------~~~~~~~---------~~~~e~ 63 (352) .+.++..-++...+| -|||+|++..-+...+..+.+.+..... .++-.+. +...+. T Consensus 13 ~~~L~~ai~~~rl~h-AyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~~~g~~~~~~~~ 91 (314) T PRK07399 13 IELLTAAIEQNRIAP-AYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEA 91 (314) T ss_pred HHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHH T ss_conf 999999998599674-4877899983299999999999857899997665587518999778860562003454557789 Q ss_pred --------------HCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH Q ss_conf --------------4189999998717888888239998477410-4578988988510565607999852654311356 Q gi|254780804|r 64 --------------QKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 (352) Q Consensus 64 --------------~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~ 128 (352) .+++..+...+...|+-|++|+|||.++... .....+|...++.|+.. ++|+.+.+.. T Consensus 92 ~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP~~~-~fILit~~~~------ 164 (314) T PRK07399 92 EEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAPSPE------ 164 (314) T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCC-EEEEEECCHH------ T ss_conf 876530268777879999999999731885688479998897871999999999861478785-6999979936------ Q ss_pred HHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 67654-31121014664420013588988754302566756799999620012355689999997510344434888887 Q gi|254780804|r 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352) Q Consensus 129 k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352) +...+ ...+..++|.+.+..++.+++++.....+..++.+++-.+ .+|..+.+...++.+... ..+ +. T Consensus 165 ~lLpTI~SRCQ~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~~---A~GspG~a~~~~~~~~~i-------~~e-l~ 233 (314) T PRK07399 165 SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDNINEILDHPELLAL---AQGSPGAAIANIEQLQSI-------PPE-LL 233 (314) T ss_pred HCCHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH---HCCCHHHHHHHHHHHHHC-------CHH-HH T ss_conf 4914664187563389989999999999716643310278999988---179979999999998748-------699-99 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC Q ss_conf 75310122111467888764102369999999853110001458999999999999999830256898999986089999 Q gi|254780804|r 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 (352) Q Consensus 208 ~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~ 287 (352) ..+.... .+...++.+....-.. .-+ ..+|+. T Consensus 234 ~~l~~~~-------------~~~~~~l~lak~i~~~----Ld~-------~~qlwl------------------------ 265 (314) T PRK07399 234 QKLEQPP-------------KNPLEALELAKDISEE----LDI-------EQQLWL------------------------ 265 (314) T ss_pred HHHHCCC-------------CCHHHHHHHHHHHHHH----HHH-------HHHHHH------------------------ T ss_conf 9986245-------------6899999998861266----788-------999999------------------------ Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 768999999986499899999999999999995328999899999999999996 Q gi|254780804|r 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 (352) Q Consensus 288 ~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~ 341 (352) .+.+ |...|...+-..++..|-++..+++.+ ..+...++-++|.++.. T Consensus 266 ---~~~l--q~~~w~~~~~~~~~~~le~~r~~L~~~-vqprL~~Ev~ll~l~~~ 313 (314) T PRK07399 266 ---IDYL--QQHYWQKTKNSQLLKKLEKLRKQLLSY-VQPRLAWEVTLLELSQE 313 (314) T ss_pred ---HHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCC T ss_conf ---9999--999998600379999999999999852-88089999999999734 No 52 >PRK05917 DNA polymerase III subunit delta'; Validated Probab=98.71 E-value=1.2e-05 Score=56.36 Aligned_cols=260 Identities=11% Similarity=0.074 Sum_probs=138.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC----------CEEEEE--EHHHH---HCCHHHH Q ss_conf 37887532100101384799956996589999999999733566677----------307762--08896---4189999 Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDP----------FSLVVL--NALEI---QKNISTF 70 (352) Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~----------~~~~~~--~~~e~---~~d~~~l 70 (352) +.|-+.+.-++..++|. |||+|++.--+...+..+.+.+.-+...+ -.+..+ ++..- .+.+..+ T Consensus 5 ~We~L~~~i~~~Rl~HA-yLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l 83 (290) T PRK05917 5 AWEALLQRVRDQKVPSA-ILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAI 83 (290) T ss_pred HHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH T ss_conf 99999999983996606-87689998659999999999985789961688987468998599615777887867899999 Q ss_pred HHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 99871788888823999847741-04578988988510565607999852654311356676543112101466442001 Q gi|254780804|r 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 (352) Q Consensus 71 ~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~ 149 (352) ...+...|.-|++|+++|.++.. ......+|...++.||+++++|+.+.+...= --.+ ...+..+.+.. T Consensus 84 ~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~l---LpTI--~SRCQ~I~i~~----- 153 (290) T PRK05917 84 KKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRL---PPTI--RSRSLSIHIPG----- 153 (290) T ss_pred HHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHC---CHHH--HHCCCEEECCC----- T ss_conf 9996418646882699975677638999999999734798785999986992548---2377--63351167776----- Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 35889887543025667567999996200123556899999975103444348888877531012211146788876410 Q gi|254780804|r 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 (352) Q Consensus 150 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~ 229 (352) ...--++.+.+.+++...+|.+ ..-++...+..+.+. .+.++ T Consensus 154 ----------~e~~~i~~e~~~~l~~~a~g~~--------------------~~~~~~~~~k~~~d~-----~~~~~--- 195 (290) T PRK05917 154 ----------EEKTLPSKEDIAYLIRYAQGKE--------------------SVTEVGQIVKGSADT-----DKQVL--- 195 (290) T ss_pred ----------CCCCCCCHHHHHHHHHHHCCCH--------------------HHHHHHHHHCCHHHH-----HHHHH--- T ss_conf ----------2013478899999999846973--------------------888999883012776-----67877--- Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 23699999998531100014589999999999999998302568989999860899997689999999864998999999 Q gi|254780804|r 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 (352) Q Consensus 230 ~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~ 309 (352) .+..-.++..+..+||..+..+.-. +.. .+ .++.....+ .+. +.-.+.++ T Consensus 196 --------------r~k~~~~l~~ll~~~Rd~~~~~~~~-----~~s-~l------~~~~~~~~i-~~~---~~~~l~~v 245 (290) T PRK05917 196 --------------RDKTKRMLEVLLQLFRDRFTLALKV-----PAS-AL------AYPDYLKEI-LTL---PVLPLEKV 245 (290) T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHCCC-----CHH-HH------CCCHHHHHH-HHC---CCCCHHHH T ss_conf --------------8999999999999999999986169-----735-52------280689999-866---35679999 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999953289998999999999999963102 Q gi|254780804|r 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 (352) Q Consensus 310 l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~~ 345 (352) +..+-++-..+.. +......++.+.+.+...-.|. T Consensus 246 ~~~i~~a~~~l~~-~~~~~~~~~~~~l~~~~l~~~~ 280 (290) T PRK05917 246 LSIIERAVQALDN-SSSATSCLEWVALQLVSLQNRQ 280 (290) T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999998503-6766899999999999876377 No 53 >PRK08769 DNA polymerase III subunit delta'; Validated Probab=98.59 E-value=7.8e-05 Score=51.03 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=104.9 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC-----------------CCEEEEEEHH----H----H Q ss_conf 8753210010138479995699658999999999973356667-----------------7307762088----9----6 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD-----------------PFSLVVLNAL----E----I 63 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~-----------------~~~~~~~~~~----e----~ 63 (352) +.+-++.| .++| -|||+|++-.-+...+..+.+.+.....+ ++.++..... . + T Consensus 16 L~~~i~~~-rl~H-A~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I 93 (319) T PRK08769 16 TVAALDAG-RLGH-GLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEI 93 (319) T ss_pred HHHHHHCC-CCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC T ss_conf 99999769-9420-687589998789999999999983799797654338899966899896877534444543112348 Q ss_pred -HCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC Q ss_conf -418999999871788888823999847741-045789889885105656079998526543113566765431121014 Q gi|254780804|r 64 -QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 (352) Q Consensus 64 -~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~ 141 (352) .+++..+.+.+...|.-|..|++||+++.. .......|.+.++.||+++++|+.+.+.+. +-..+ ...+..++ T Consensus 94 ~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~---ll~TI--~SRCq~~~ 168 (319) T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPAR---LPATI--RSRCQRLE 168 (319) T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---CCHHH--HHCCEEEC T ss_conf 69999999999613720279569998066752899999999982279988489998699365---82477--64850111 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 664420013588988754302566756799999620012355689 Q gi|254780804|r 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 (352) Q Consensus 142 ~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~ 186 (352) +.++...+...|+... | +++..+...+...++......+ T Consensus 169 ~~~p~~~~~~~~L~~~----g--~~~~~a~~~l~~a~g~p~~A~~ 207 (319) T PRK08769 169 FKLPPAHEALAWLLSQ----G--VSERAAQEALDAARGHPGLAAQ 207 (319) T ss_pred CCCCCHHHHHHHHHHC----C--CCHHHHHHHHHHHCCCHHHHHH T ss_conf 8996999999999975----9--9918999999982799689999 No 54 >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. Probab=98.57 E-value=1.2e-05 Score=56.42 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=120.5 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHHHH Q ss_conf 79995699658999999999973356667730776208896418999999871788888823999847741---045789 Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKVLD 99 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~~~ 99 (352) ..++||+..--+....+.+...+.... .+...++..++........+. +....+++|++... .+...+ T Consensus 40 ~l~i~G~~GsGKTHLl~a~~~~~~~~~---~~~~yl~~~~~~~~~~~~l~~------l~~~d~l~iDDi~~i~~~~~~e~ 110 (226) T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQADPEVLEG------LEQADLVCLDDVEAIAGQPEWQE 110 (226) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEECHHHHHHHHHHHHHH------CCCCCEEEEECHHHHCCCHHHHH T ss_conf 699989999988999999999986269---957995299987753999972------74489999966333437837899 Q ss_pred HHHHHHHCC-CCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 889885105-65607999852654311--356676543112101466442001358898875430256675679999962 Q gi|254780804|r 100 CLEEIIIKN-ICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 100 ~l~~~~~~~-~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) .+-.++..- ..+..+++.+..-...- .+..+...-..+..+...+++...+...+..++...|+.++++++++|+.+ T Consensus 111 ~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r 190 (226) T TIGR03420 111 ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH 190 (226) T ss_pred HHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999986528289867888232032017799999688568527999999999999999985998899999999986 Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH Q ss_conf 00123556899999975103-444348888877531 Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352) Q Consensus 177 ~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352) +..|...+..-+++|--++. .+++||...|.+++. T Consensus 191 ~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kevLa 226 (226) T TIGR03420 191 GSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226 (226) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC T ss_conf 379899999999999999998089999999999849 No 55 >PRK06893 DNA replication initiation factor; Validated Probab=98.57 E-value=2.1e-05 Score=54.84 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=117.2 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH-CCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHH Q ss_conf 84799956996589999999999733566677307762088964-18999999871788888823999847741---045 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINSTSLFSKKKIILIENLST---EKK 96 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~-~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~ 96 (352) +.++++||+..--+....+.+...+..... ....+...+.. .++ .+++.++ ..-+|++++... .+. T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~---~~~yi~~~~~~~~~~-~~l~~l~------~~d~l~iDDi~~i~g~~~ 108 (229) T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR---TAIYIPLSKSQYFSP-AVLENLE------QQDLVCLDDLQAVIGNEE 108 (229) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEEHHHHHHCCH-HHHHHHH------HCCEEEEECHHHHCCCHH T ss_conf 987999899999889999999999997189---859997377564069-9998765------479799967234248838 Q ss_pred HHHHHHHHHHCCC-CCEEEE-EEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 7898898851056-560799-9852654311--35667654311210146644200135889887543025667567999 Q gi|254780804|r 97 VLDCLEEIIIKNI-CNHIII-IKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 (352) Q Consensus 97 ~~~~l~~~~~~~~-~~~~li-~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~ 172 (352) ..+.+-.++..-- .+..++ +.+......- .+-.+...-..+..+...+++......++..++...|+.+++++++| T Consensus 109 ~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~y 188 (229) T PRK06893 109 WELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANF 188 (229) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999999997599179985798833221002679999968836996677757999999999996499999899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHH Q ss_conf 99620012355689999997510-3444348888877531 Q gi|254780804|r 173 LLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIIC 211 (352) Q Consensus 173 L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~ 211 (352) |+.++..|+..+..-+++|--++ ..+++||..-|.++++ T Consensus 189 l~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvkevL~ 228 (229) T PRK06893 189 LLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229) T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC T ss_conf 9998347899999999999999998089999999999868 No 56 >KOG0991 consensus Probab=98.55 E-value=1.2e-05 Score=56.44 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=163.7 Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHC----CCCC--CCCE Q ss_conf 532100101384799956996589999999999733566677307762088964189999998717----8888--8823 Q gi|254780804|r 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS----TSLF--SKKK 84 (352) Q Consensus 11 ~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t----~slF--~~~k 84 (352) +..-+.-.++| .+|.|+.---+...+.-+...+.++..-+ .+..+.+.+- ..++.+.+.+.+ .--. |..| T Consensus 40 ~via~~gnmP~--liisGpPG~GKTTsi~~LAr~LLG~~~ke-~vLELNASde-RGIDvVRn~IK~FAQ~kv~lp~grhK 115 (333) T KOG0991 40 SVIAKEGNMPN--LIISGPPGTGKTTSILCLARELLGDSYKE-AVLELNASDE-RGIDVVRNKIKMFAQKKVTLPPGRHK 115 (333) T ss_pred HHHHHCCCCCC--EEEECCCCCCHHHHHHHHHHHHHCHHHHH-HHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 99997289986--67527999861648999999983806665-7632057655-46089999999998720348998524 Q ss_pred EEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9998477410-457898898851056560799985265431135667654-31121014664420013588988754302 Q gi|254780804|r 85 IILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 (352) Q Consensus 85 lIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g 162 (352) +||++.+... .....++-.-.+--+..|-+.+-... ..|++|. ...++.+.+...+..++-.-+.+.++.++ T Consensus 116 IiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~------s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ek 189 (333) T KOG0991 116 IIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQ------SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEK 189 (333) T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCC------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC T ss_conf 8996152202068999999999997063200000154------2132226773457653222678999999999998707 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 56675679999962001235568999999751034443488888775310122111467888764102369999999853 Q gi|254780804|r 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 (352) Q Consensus 163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~ 242 (352) ++++++.++.++....+|++...|-|+--. .+-+.++.|.|-+++......-+-.++-+++.++...|++++.+++. T Consensus 190 v~yt~dgLeaiifta~GDMRQalNnLQst~---~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~ 266 (333) T KOG0991 190 VNYTDDGLEAIIFTAQGDMRQALNNLQSTV---NGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWK 266 (333) T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 887711477855441661999999999874---05452463231000699985999999999986129999999999997 Q ss_pred HHCCCHHHHHHHHHHHHHH Q ss_conf 1100014589999999999 Q gi|254780804|r 243 SKMPSHALLHGFLQKFQLL 261 (352) Q Consensus 243 ~g~~~~~il~~L~~~f~~L 261 (352) .|.+|.-|+..+.|-...+ T Consensus 267 lgysp~Dii~~~FRv~K~~ 285 (333) T KOG0991 267 LGYSPEDIITTLFRVVKNM 285 (333) T ss_pred CCCCHHHHHHHHHHHHHHC T ss_conf 4898899999999999842 No 57 >TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication. Probab=98.49 E-value=2.4e-06 Score=61.04 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=117.0 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC--------------------CCCCCCCEEEEEEHHH------ Q ss_conf 87532100101384799956996589999999999733--------------------5666773077620889------ Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNIS--------------------ITYHDPFSLVVLNALE------ 62 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~--------------------~~~~~~~~~~~~~~~e------ 62 (352) +...++++ .++|. |||+|++-.-+...+..+.+.+. ...+.|+-.+.=++.. T Consensus 4 l~~~~~~~-r~~HA-~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~d 81 (216) T TIGR00678 4 LQRALEKG-RLAHA-YLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTAD 81 (216) T ss_pred HHHHHHCC-CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHH T ss_conf 78898606-78861-25444888748999999999980778577888885888999870799823787423477777764 Q ss_pred -----------------HHCC-HHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC Q ss_conf -----------------6418-9999998717888888239998477410-45789889885105656079998526543 Q gi|254780804|r 63 -----------------IQKN-ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352) Q Consensus 63 -----------------~~~d-~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352) |.-| +-.+.+++...|.=|++|||||+++... ......|.+.++.||+++++|+.+...++ T Consensus 82 e~~~~~~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEEPp~~t~fiL~~~~~DP 161 (216) T TIGR00678 82 EAAEGEEGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITHSPDP 161 (216) T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEECCCCCEEEEEECCCCCH T ss_conf 58976256421136787872789999999860642147517997673232589898651010127987079885088884 Q ss_pred CHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 1135667654-3112101466442001358898875430256675679999962001235 Q gi|254780804|r 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 (352) Q Consensus 124 ~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~ 182 (352) . +++-+ ...+..++|.+++...+.+|+.+.....+. ++++..++...||... T Consensus 162 ~----~lLpTI~SRCq~~~f~~l~~~~~~~~L~~~g~~~~~---~~~a~~~~~~~~G~p~ 214 (216) T TIGR00678 162 E----RLLPTIRSRCQVLPFPPLSEEALLQWLIEQGISENV---PEAAELLLALAGGSPG 214 (216) T ss_pred H----HHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCCCC T ss_conf 3----322111032015862599889999999970878780---6899999998468512 No 58 >PRK05642 DNA replication initiation factor; Validated Probab=98.49 E-value=2.6e-05 Score=54.20 Aligned_cols=182 Identities=11% Similarity=0.100 Sum_probs=117.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHH Q ss_conf 8479995699658999999999973356667730776208896418999999871788888823999847741---0457 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKV 97 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~ 97 (352) ++..++||+.---+....+.+...+...+ -....+...+.......+++.+ ..--+|+|+|... .... T Consensus 45 ~~~l~i~G~~G~GKTHLL~A~~~~~~~~~---~~~~yl~~~~~~~~~~~~~~~l------~~~d~l~IDDi~~i~g~~~~ 115 (234) T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRGPELLDNL------EQYELVCIDDLDVIAGKADW 115 (234) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHHHHHHHHHH------HHCCEEEEECHHHHCCCHHH T ss_conf 88389988999988999999999998079---9679978999875449998624------22798989364554688599 Q ss_pred HHHHHHHHHCC-CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 89889885105-656079998526543113--566765431121014664420013588988754302566756799999 Q gi|254780804|r 98 LDCLEEIIIKN-ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 (352) Q Consensus 98 ~~~l~~~~~~~-~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 174 (352) .+.+-.++..- ..+..+++.+..-...-. +..+...-..+.++...+++..+....++.++...|+.+++++++||+ T Consensus 116 e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~ 195 (234) T PRK05642 116 EEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFIL 195 (234) T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 99999999999983995999578795552300167999995781275148998999999999977546899989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH Q ss_conf 6200123556899999975103-444348888877531 Q gi|254780804|r 175 ANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352) Q Consensus 175 ~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352) .++.-|+..+.+-+++|--++. .+++||...|.++++ T Consensus 196 ~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplvk~vLg 233 (234) T PRK05642 196 TRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC T ss_conf 97358899999999999999998389999999999838 No 59 >PRK06090 DNA polymerase III subunit delta'; Validated Probab=98.44 E-value=0.00018 Score=48.60 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=149.4 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-------------------CCCCCEEEEEE--HHHH-HC Q ss_conf 88753210010138479995699658999999999973356-------------------66773077620--8896-41 Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT-------------------YHDPFSLVVLN--ALEI-QK 65 (352) Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~-------------------~~~~~~~~~~~--~~e~-~~ 65 (352) ++.+....+ ..+| -|||+|++-.-....+..+.+.+.-. .+.++-...-+ ++.+ .+ T Consensus 14 ~l~~~~~~~-rl~H-A~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd 91 (319) T PRK06090 14 NWKSGLDAE-RIPG-ALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVE 91 (319) T ss_pred HHHHHHHCC-CCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHH T ss_conf 999999869-9630-67667999857999999999998089999998877877999875899982366123356768799 Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 89999998717888888239998477410-45789889885105656079998526543113566765431121014664 Q gi|254780804|r 66 NISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 66 d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~ 144 (352) ++..+.+.+...|.-|+.|+|+|.++... .....+|-+.++.||+++++|+.+....+ +-..+ ...+..+.+.+ T Consensus 92 ~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~---ll~TI--~SRCq~~~l~~ 166 (319) T PRK06090 92 QIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR---LLPTI--VSRCQQWVVTP 166 (319) T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---CCCCH--HHCCCCCCCCC T ss_conf 99999999754521069369998144434999999999984289988389987685120---86418--76144502899 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 42001358898875430256675679999962001235568999999751034443488888775310122111467888 Q gi|254780804|r 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 (352) Q Consensus 145 ~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~da 224 (352) ++......|+++. |......| ....++....+.. .++.-.-.....-...+.+ T Consensus 167 p~~~~~~~WL~~q----~~~~~~~a----L~l~~g~Pl~a~~------------------~l~~~~~~~~~~l~~~l~~- 219 (319) T PRK06090 167 PSTDQAMQWLKGQ----GISVPAYA----LKLNMGSPLKTLA------------------MMKEGELEEYHKLERQLVD- 219 (319) T ss_pred CCHHHHHHHHHHH----CCCCHHHH----HHHCCCCCHHHHH------------------HHCCCHHHHHHHHHHHHHH- T ss_conf 5999999999884----87557999----9884999499999------------------8638689999999999999- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH Q ss_conf 76410236999999985311000145899999999999999983025689899998608999976899999998649989 Q gi|254780804|r 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 (352) Q Consensus 225 i~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~ 304 (352) ++.++....+.....+ . .++...+.-|..-+....+++ .|...... . + ...++.+++.. T Consensus 220 ~~~~~~~~~~~~~~~~-~--~~~~~~L~Wl~~lL~Da~K~~-----~gi~~~~~---------~---~-~~~~l~~l~~~ 278 (319) T PRK06090 220 ALSGPVSDVLKCASLI-A--ADPLTALSWLWLLLTDAQKAH-----FGVQNEYI---------L---P-GSAALGPFTYS 278 (319) T ss_pred HHHCCCCHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHH-----HCCCCCHH---------H---H-HHHHHHHCCHH T ss_conf 9847884199998873-6--057778999999999999998-----60521066---------6---6-79999841899 Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999953289-9989999999999999631 Q gi|254780804|r 305 LVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTAC 343 (352) Q Consensus 305 ~l~~~l~~L~~~d~~~K~~~-~~~~~il~~~ll~l~~~a~ 343 (352) .+...+..+.++-.++.+.+ .+.+.++.+.+++.....| T Consensus 279 ~L~~~~~~l~~~r~qL~~~~~lN~ELll~~~Ll~~~~~~c 318 (319) T PRK06090 279 GLYASTAKLLELKEQLQQFSGLNTELLIMNWLIESREALC 318 (319) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999718872699999999999878743 No 60 >PRK08084 DNA replication initiation factor; Provisional Probab=98.42 E-value=5.8e-05 Score=51.91 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=119.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHHH Q ss_conf 479995699658999999999973356667730776208896418999999871788888823999847741---04578 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKVL 98 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~~ 98 (352) ...++||+.---+....+.+...+...+ ....++..++...-...+.+.+++ --+|.|+|... ..... T Consensus 46 ~~l~l~G~~G~GKTHLLqA~~~~~~~~~---~~~~yl~~~~~~~~~~~~l~~l~~------~dll~iDDi~~i~g~~~~e 116 (235) T PRK08084 46 GYIYLWGREGAGRSHLLHAACAELSQRG---DAVGYVPLDKRAWFVPEVLEGMEQ------LSLVCIDNIECIAGDELWE 116 (235) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEEEHHHHHHHHHHHHHHHHH------CCEEEEECHHHHCCCHHHH T ss_conf 7699989999888999999999997079---857998779866517999987641------8989982745546997899 Q ss_pred HHHHHHHHCC--CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 9889885105--656079998526543113--566765431121014664420013588988754302566756799999 Q gi|254780804|r 99 DCLEEIIIKN--ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 (352) Q Consensus 99 ~~l~~~~~~~--~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 174 (352) +.+-.++..- ...+.+|+.+......-. +-.+...-..+.++...+++..+....++.++...|+.+++++++||+ T Consensus 117 e~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~ 196 (235) T PRK08084 117 MAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLL 196 (235) T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 99999999999848966999679882430231288999995697278559998999999999999739999989999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHH Q ss_conf 62001235568999999751034-44348888877531 Q gi|254780804|r 175 ANLGGDRIASRNELQKLSSYCLE-DILITEQHVKDIIC 211 (352) Q Consensus 175 ~~~g~d~~~l~~EleKL~ly~~~-~~~It~~dI~~~v~ 211 (352) .++..|+..+..-+++|-.++.. +++||...|.+++. T Consensus 197 ~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vkevL~ 234 (235) T PRK08084 197 KRLDREMRTLFMTLDQLDKASITAQRKLTIPFVKEILK 234 (235) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC T ss_conf 86158899999999999999998199999999999965 No 61 >PRK07276 DNA polymerase III subunit delta'; Validated Probab=98.42 E-value=0.0002 Score=48.34 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=90.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---CCCC---------------EEEEEE--HHHH-HC Q ss_conf 7887532100101384799956996589999999999733566---6773---------------077620--8896-41 Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDPF---------------SLVVLN--ALEI-QK 65 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~~~~---------------~~~~~~--~~e~-~~ 65 (352) .+.++..-++...+|. |||+| +.|- ...+..+.+.+.-.. ..+. .+..+. +.-+ .+ T Consensus 11 ~~~l~~~i~~~rl~HA-yLf~G-~~Gk-~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~~~~I~vd 87 (290) T PRK07276 11 FQRFQTILEQDRLNHA-YLFSG-DFAS-FEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQGQVIKTD 87 (290) T ss_pred HHHHHHHHHCCCCCEE-EECCC-CCCH-HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCHH T ss_conf 9999999984996505-42169-8687-9999999999818999998989889999998769998713771677757688 Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 89999998717888888239998477410-45789889885105656079998526543113566765431121014664 Q gi|254780804|r 66 NISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 66 d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~ 144 (352) ++..+.+.+...|+-|.+|++||.++... ......|...++.||+++++|+.+.+...- --.+ ...+..++| | T Consensus 88 ~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~~~l---LpTI--~SRCQ~i~f-p 161 (290) T PRK07276 88 TIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKV---LPTI--KSRTQIFHF-P 161 (290) T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHC---CHHH--HHCCCCCCC-C T ss_conf 999999998445613782799977656529999999999703898883799887992549---3788--736601028-9 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 4200135889887543025667567999996200 Q gi|254780804|r 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 (352) Q Consensus 145 ~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 178 (352) .... .+...+.+.| +.+.-++.++...+ T Consensus 162 ~~~~----~l~~~l~~~g--i~~~~a~~la~~~~ 189 (290) T PRK07276 162 KNEA----YLYQLLEEKG--LLKTQAKLLAKLAQ 189 (290) T ss_pred CCHH----HHHHHHHHCC--CCHHHHHHHHHHHC T ss_conf 9679----9999999869--98679999999965 No 62 >PRK05818 DNA polymerase III subunit delta'; Validated Probab=98.37 E-value=4.6e-05 Score=52.55 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=118.1 Q ss_pred HHHHHHHHHCCCCCC-CCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 999999871788888-823999847741-045789889885105656079998526543113566765431121014664 Q gi|254780804|r 67 ISTFWNEINSTSLFS-KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 67 ~~~l~~~~~t~slF~-~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~ 144 (352) ...+.+.....|.-+ ++|+++|.++.. ......+|...++.||+++++|+.+.+...- --.+ .+ .++-...-+ T Consensus 73 ir~li~~l~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~L---LPTI-rS-RC~~~~~~~ 147 (262) T PRK05818 73 ALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNI---LNTI-LS-RCVQYVVLS 147 (262) T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHC---CCHH-HH-HCCCCCCCC T ss_conf 999999982114002884899987778749999999998612898783899973881437---3088-87-701446664 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 4200135889887543025667567999996200-123556899999975103444348888877531012211146788 Q gi|254780804|r 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 (352) Q Consensus 145 ~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g-~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~d 223 (352) ...+...+...+......+.++...++.+++... ++.+.+..=++-+.. .+++.++.++|..+.+.-..+-+.+|.+ T Consensus 148 ~~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~--~~n~~~~~~~~~~l~~~i~~~~i~~ll~ 225 (262) T PRK05818 148 KEKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLIN--KKNKLIQIHKAWILFKTFSYYEIAQLLN 225 (262) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCCEEHHHHHHHHHCCCHHHHHHHHH T ss_conf 34667888874088898764101107999988616768889999999987--5688433999999983135999999998 Q ss_pred HHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 876---4102369999999853110001458999 Q gi|254780804|r 224 ATI---QGKIYNAIMLADFFLASKMPSHALLHGF 254 (352) Q Consensus 224 ai~---~~~~~~a~~~l~~l~~~g~~~~~il~~L 254 (352) .+. .++...++.-+-..+.-+-+--.++..+ T Consensus 226 ~~~~~~d~~~k~~~~~~~~~~~~n~~~~~l~~~~ 259 (262) T PRK05818 226 LLIPTVDPEKKSKLYNLLSNLKYNLPKTALFANI 259 (262) T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 7312668522688998998774497689999997 No 63 >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Probab=98.36 E-value=0.00017 Score=48.85 Aligned_cols=203 Identities=14% Similarity=0.185 Sum_probs=128.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHC------CCCCCCCEEEEEECCCC Q ss_conf 384799956996589999999999733566677307762088964189999998717------88888823999847741 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS------TSLFSKKKIILIENLST 93 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t------~slF~~~klIii~~~~~ 93 (352) .++..+|||+.-.-+....+.+...+... +..-.+..+...+...+ +..++.. ...+ .-.+++|+|... T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~-~~~a~v~y~~se~f~~~---~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~ 186 (408) T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN-GPNARVVYLTSEDFTND---FVKALRDNEMEKFKEKY-SLDLLLIDDIQF 186 (408) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCHHHHHHH---HHHHHHHHHHHHHHHHH-CCCEEEECHHHH T ss_conf 68957998799997899999999999862-99864885048998999---99998850488888764-267355513867 Q ss_pred ---HHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCH Q ss_conf ---0457898898851056-56079998526543113--56676543112101466442001358898875430256675 Q gi|254780804|r 94 ---EKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 (352) Q Consensus 94 ---~k~~~~~l~~~~~~~~-~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~ 167 (352) .....+.+...+..-. .+..+|+.+...++.-. .-.+...-+-+..+..-|++.......++..+...|+.+++ T Consensus 187 l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ 266 (408) T COG0593 187 LAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPD 266 (408) T ss_pred HCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCH T ss_conf 56771579999999998885088799970788322110358899898630577527988899999999999865888887 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCC----CCHHHHHHHHHH Q ss_conf 67999996200123556899999975103444-3488888775310122----111467888764 Q gi|254780804|r 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDI-LITEQHVKDIICDTHV----LYIEEIINATIQ 227 (352) Q Consensus 168 ~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~-~It~~dI~~~v~~~~~----~~if~L~dai~~ 227 (352) +++.+++..+..|++.+...+++|..|+...+ .||.+.+.+++.+... .++.++...++. T Consensus 267 ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~itie~I~~~Va~ 331 (408) T COG0593 267 EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEKITIEDIQKIVAE 331 (408) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999700309999999999999998538757699999999986401455899999999998 No 64 >PRK00149 dnaA chromosomal replication initiation protein; Reviewed Probab=98.35 E-value=0.0003 Score=47.15 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=130.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCC------CCCCEEEEEECCC-- Q ss_conf 84799956996589999999999733566677307762088964189999998717888------8882399984774-- Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL------FSKKKIILIENLS-- 92 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~sl------F~~~klIii~~~~-- 92 (352) |+ .+|||.--.-+....+.+...+... ..+..+.++.+++... .+.+.+.+-.+ +-+--+++|+|.. T Consensus 146 NP-LfIyG~~GlGKTHLl~AIgn~~~~~-~p~~~v~Y~tae~F~~---~~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl 220 (447) T PRK00149 146 NP-LFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVSSEKFTN---DFVKALRNNAMEEFKEKYRSVDVLLIDDIQFL 220 (447) T ss_pred CC-EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHH---HHHHHHHCCCHHHHHHHHHCCCEEEECHHHHH T ss_conf 85-5897799887889999999999985-8997289954999999---99999851869999999972885432148886 Q ss_pred -CHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHH-HH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHH Q ss_conf -1045789889885105-656079998526543113-56-6765431121014664420013588988754302566756 Q gi|254780804|r 93 -TEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNT-LR-KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 (352) Q Consensus 93 -~~k~~~~~l~~~~~~~-~~~~~li~~a~~l~k~~k-l~-k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 168 (352) +..+..+.+-..+..- ..+--+|+.++..++.-+ +- .+...-..+..++..+++...-...++..+...|+.++++ T Consensus 221 ~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~ 300 (447) T PRK00149 221 AGKEKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNE 300 (447) T ss_pred HCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH T ss_conf 05577999999999999984996899578896765651177886763762651059999999999999999728999989 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCC-----CCCCHHHHHHHHHH Q ss_conf 7999996200123556899999975103-44434888887753101-----22111467888764 Q gi|254780804|r 169 AKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIICDT-----HVLYIEEIINATIQ 227 (352) Q Consensus 169 a~~~L~~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~~~-----~~~~if~L~dai~~ 227 (352) ++++|++.+.+|.+.+...|.+|..|+. ...+||.+.+..++.+. ...++..+.+++.. T Consensus 301 v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~it~~~I~~~Va~ 365 (447) T PRK00149 301 VLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEALKDLLRLQKKQITIENIQKVVAE 365 (447) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 99999971268899999999999999998689999999999999874036787899999999998 No 65 >PRK08727 hypothetical protein; Validated Probab=98.27 E-value=0.00018 Score=48.62 Aligned_cols=183 Identities=8% Similarity=0.065 Sum_probs=116.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHHHH Q ss_conf 79995699658999999999973356667730776208896418999999871788888823999847741---045789 Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKVLD 99 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~~~ 99 (352) ..++||+.---+....+.+.......+ .+..+++..+........++.+ ...-+|.|++... ...... T Consensus 43 ~lyl~G~~GsGKTHLl~a~~~~~~~~~---~~~~yl~l~~~~~~~~~~l~~l------e~~~ll~iDDid~i~g~~~~e~ 113 (233) T PRK08727 43 WLYLSGPAGTGKTHLALSLCAAAEQAG---RSSAYLPLQAAAGRLRDALEAL------EGRSLVALDGVDSIAGQREDEV 113 (233) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHHHHHHHHHH------CCCCEEEEECCHHCCCCHHHHH T ss_conf 899989999988999999999998279---9728844788532025677531------0389789855011269827999 Q ss_pred HHHHHHHCC-CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 889885105-656079998526543113--56676543112101466442001358898875430256675679999962 Q gi|254780804|r 100 CLEEIIIKN-ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 100 ~l~~~~~~~-~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) .+-.++..- ..+..+++.+......-. +-.+...-..+..+...+++.......+..++...|+.+++++++||+.+ T Consensus 114 aLFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL~SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r 193 (233) T PRK08727 114 ALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTH 193 (233) T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999986198389977989566231002199999669228857889799999999999986999998999999985 Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCC Q ss_conf 0012355689999997510-3444348888877531012 Q gi|254780804|r 177 LGGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTH 214 (352) Q Consensus 177 ~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~~~~ 214 (352) +.-|+..+.+-+++|--++ ..+++||.--|.+++...+ T Consensus 194 ~~R~~~~l~~~l~~LD~~SL~~kr~iTip~vk~vL~e~~ 232 (233) T PRK08727 194 GERELAGLVALLDRLDRESLAAKRRITVPFLRRVLEEGR 232 (233) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC T ss_conf 688999999999999999998089888999999997226 No 66 >pfam00308 Bac_DnaA Bacterial dnaA protein. Probab=98.27 E-value=2.7e-05 Score=54.07 Aligned_cols=169 Identities=12% Similarity=0.177 Sum_probs=109.6 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCC------CCCCCEEEEEECCCC--- Q ss_conf 79995699658999999999973356667730776208896418999999871788------888823999847741--- Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS------LFSKKKIILIENLST--- 93 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~s------lF~~~klIii~~~~~--- 93 (352) .+++||+.---+....+.+...+... .....+..++.+++..+. .+.+..-. -+..-.+++++|... T Consensus 36 pl~i~G~~G~GKTHLLqA~~~~~~~~-~~~~~v~yl~~~~~~~~~---~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l~~ 111 (219) T pfam00308 36 PLFIYGGVGLGKTHLLHAIGNYALRN-FPNLRVVYLTSEEFLNDF---VDALRDNKIEAFKKSYRNVDLLLIDDIQFLAG 111 (219) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHH---HHHHHCCCHHHHHHHHHHCCHHHHCCHHHHCC T ss_conf 26998899998889999999999984-999828884399999988---99998188889999976323365223676568 Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 04578988988510-565607999852654311--356676543112101466442001358898875430256675679 Q gi|254780804|r 94 EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 (352) Q Consensus 94 ~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~ 170 (352) .....+.+-.++.. ...+..+|+.+..-...- ....+...-..+.+++..+++.......++.+++..|+.++++++ T Consensus 112 ~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~ 191 (219) T pfam00308 112 KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVL 191 (219) T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 64789999999999997298699977998100245327799998687566116999999999999999984999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999620012355689999997510 Q gi|254780804|r 171 QILLANLGGDRIASRNELQKLSSYC 195 (352) Q Consensus 171 ~~L~~~~g~d~~~l~~EleKL~ly~ 195 (352) ++|+.++..|++.+..-|++|..|+ T Consensus 192 ~yl~~r~~R~~r~L~~~L~~L~~~~ 216 (219) T pfam00308 192 NFIAQRITDNVRELEGALNRLLAFA 216 (219) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 9999842798999999999999855 No 67 >PRK08903 hypothetical protein; Validated Probab=98.22 E-value=0.00013 Score=49.53 Aligned_cols=180 Identities=9% Similarity=0.095 Sum_probs=115.1 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHH-HHHH Q ss_conf 847999569965899999999997335666773077620889641899999987178888882399984774104-5789 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEK-KVLD 99 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~k-~~~~ 99 (352) .+.+++||+.---+....+.+...+.... .+..+++..+. .+ ..+.. ..-.+|+|++..... .... T Consensus 42 ~~~l~i~G~~G~GKTHLl~a~~~~~~~~~---~~~~yl~~~~~---~~-~~~~~------~~~d~l~iDDi~~i~~~~q~ 108 (227) T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAAASEGG---KNARYLDPASP---LL-AFDFD------PRAELYAVDDVERLDDAQQI 108 (227) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEECCCCC---HH-HHHHH------HCCCEEEEECCCCCCCHHHH T ss_conf 86699989999988899999999998069---97499651104---57-77420------01898999641148956999 Q ss_pred HHHHHHHCC--CCCEEEEEEECCCCCCHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 889885105--6560799985265431135-6676543112101466442001358898875430256675679999962 Q gi|254780804|r 100 CLEEIIIKN--ICNHIIIIKSNEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 100 ~l~~~~~~~--~~~~~li~~a~~l~k~~kl-~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) .+-.++..- .....+++.+..-.....+ -.+...-..+..+...+++......+++.++...|+.+++++++||+.+ T Consensus 109 ~lF~l~N~~~~~~~~~ll~s~~~~p~~l~~~~DL~SRl~~gl~~~i~~pdde~~~~iL~~~a~~rgl~l~~~v~~yl~~r 188 (227) T PRK08903 109 ALFNLFNRVRAHGKTALLVAGPAAPLALDVREDLRTRLGWGLVYEVKPLSDEDKIAALKAAAAERGLQLADEVPDYLLTH 188 (227) T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999997299489971899712012008999999389738997979999999999999962999988999999998 Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCC Q ss_conf 00123556899999975103-44434888887753101 Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCL-EDILITEQHVKDIICDT 213 (352) Q Consensus 177 ~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~~~ 213 (352) +..|...+..-+++|--++. .+++||..-|.++++.. T Consensus 189 ~~R~~~~L~~~l~~Ld~~sl~~kr~iTi~lvkevLa~~ 226 (227) T PRK08903 189 FRRDMPSLMALLDALDRYSLEQKRAVTLPLLREMLAAP 226 (227) T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC T ss_conf 34789999999999999999829999999999985599 No 68 >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Probab=98.16 E-value=0.00055 Score=45.43 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=104.3 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHHHHC---CHHHHHHHHHCC Q ss_conf 13847999569965899999999997335666------------------773077620889641---899999987178 Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALEIQK---NISTFWNEINST 77 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e~~~---d~~~l~~~~~t~ 77 (352) ++| -|||+|++---+...+..+.+.+..... ...++..+...+... -.+.+.+...+. T Consensus 23 ~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325) T COG0470 23 LPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325) T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC T ss_conf 876-1003799999789999999999658664334552002244432025688659977321333300699999999860 Q ss_pred CCC---CCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 888---88239998477410-45789889885105656079998526543113566765431121014664420013588 Q gi|254780804|r 78 SLF---SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 78 slF---~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) +.. ++.|+|+|+++... .....++...++.|+.++.+|+.+... +++...+ ...+..+.|.+.+......| T Consensus 102 ~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~---~~il~tI--~SRc~~i~f~~~~~~~~i~~ 176 (325) T COG0470 102 SESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP---SKILPTI--RSRCQRIRFKPPSRLEAIAW 176 (325) T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCH---HHCHHHH--HHHEEEEECCCCCHHHHHHH T ss_conf 446566772699973203269888876754332488871699974985---5564787--75607887677418899998 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98875430256675679999962001235568999999751 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly 194 (352) .. ++++..++...++|++...+-++-++.. T Consensus 177 ~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325) T COG0470 177 LE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325) T ss_pred HH-----------HHHHHHHHHHHCCHHHHHCCHHHHHHHC T ss_conf 50-----------7579999987040688734899999861 No 69 >PRK12422 chromosomal replication initiation protein; Provisional Probab=98.08 E-value=0.0011 Score=43.37 Aligned_cols=200 Identities=15% Similarity=0.186 Sum_probs=128.3 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCC------CCCCEEEEEECCC-- Q ss_conf 84799956996589999999999733566677307762088964189999998717888------8882399984774-- Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL------FSKKKIILIENLS-- 92 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~sl------F~~~klIii~~~~-- 92 (352) |+ .+|||+--.-+-...+.+-+.+..+ ...+.++.+++... .+.+.+.+-.+ +-+--+++|+|.. T Consensus 142 NP-LfIyG~~GlGKTHLL~AIgn~i~~~---~~kV~Yvtae~F~~---~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl 214 (455) T PRK12422 142 NP-IYLFGPEGSGKTHLMQAAVSALRES---GGKILYVSSELFTE---HLVSAIRSGEMQRFRSFYRNVDALFIEDIEVF 214 (455) T ss_pred CC-EEEECCCCCCHHHHHHHHHHHHHCC---CCEEEEECHHHHHH---HHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHH T ss_conf 87-5887899997899999999985379---98699974999999---99999975889999999963887763147887 Q ss_pred -CHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHH-HH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHH Q ss_conf -1045789889885105-656079998526543113-56-6765431121014664420013588988754302566756 Q gi|254780804|r 93 -TEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNT-LR-KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 (352) Q Consensus 93 -~~k~~~~~l~~~~~~~-~~~~~li~~a~~l~k~~k-l~-k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 168 (352) +..+..+.+-..+..- ..+--+|+.++..++.-+ +- .+...-..+..++..|++.......++..+...|+.++.+ T Consensus 215 ~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~e 294 (455) T PRK12422 215 SGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIPIHPLTREGLRSFLMRQAEQLSIRIEET 294 (455) T ss_pred HCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHH T ss_conf 28488999999999999985996999689895765126899998863761321689998999999999998718888446 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHC-CCCCCCCHHHHHHHHHCCC------CCCHHHHHHHHHH Q ss_conf 799999620012355689999997---510-3444348888877531012------2111467888764 Q gi|254780804|r 169 AKQILLANLGGDRIASRNELQKLS---SYC-LEDILITEQHVKDIICDTH------VLYIEEIINATIQ 227 (352) Q Consensus 169 a~~~L~~~~g~d~~~l~~EleKL~---ly~-~~~~~It~~dI~~~v~~~~------~~~if~L~dai~~ 227 (352) +++++++.+.+|.+.+...+.+|. .|. .....++.+++..++.+.. ..++..+.+++.. T Consensus 295 v~~~iA~~i~~niReLeGal~~l~~~~~~~~~~~~~i~~~~~~~~l~d~~~~~~~~~it~~~I~~~Va~ 363 (455) T PRK12422 295 ALDFLIQALSSNVKTLLHALTLLAKRVAYKKLSHQLLYEDDIKALLHDVLEAAESVRLTPSGIVRAVAQ 363 (455) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 899999997551799999999999999987156883649999999998742245765899999999998 No 70 >PRK07132 DNA polymerase III subunit delta'; Validated Probab=98.05 E-value=0.0005 Score=45.69 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=98.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC-------CCCEEEEEEHHHHH---CCHHHHHHHHH Q ss_conf 378875321001013847999569965899999999997335666-------77307762088964---18999999871 Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-------DPFSLVVLNALEIQ---KNISTFWNEIN 75 (352) Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~-------~~~~~~~~~~~e~~---~d~~~l~~~~~ 75 (352) --+.+++.-++...+| .|||+|+..-.+...+..+.+.+..... .+.+...++..+.. .+.....++.. T Consensus 6 iv~~L~nai~~~klsH-AYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~~~i~~~~ 84 (303) T PRK07132 6 IIKSLDNLAKQNKISH-SFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFLSAIEKFS 84 (303) T ss_pred HHHHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH T ss_conf 9999999998499761-688678998679999999999972998788875456532304133222001688999999997 Q ss_pred CCCCCCC-CEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 7888888-23999847741-045789889885105656079998526543113566765431121014664420013588 Q gi|254780804|r 76 STSLFSK-KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 76 t~slF~~-~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) ..|..++ .|+++++++.. +.....+|...++.||+++++++.+.+..+= -..+ ...+..+.+.+.+..++... T Consensus 85 ~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~~~i---l~TI--~SRCq~~~f~~~~~~~i~~~ 159 (303) T PRK07132 85 FSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNINKV---IPTI--VSRCQVINVKEPDQQKILAK 159 (303) T ss_pred HCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCHHHC---CHHH--HHCCEEEECCCCCHHHHHHH T ss_conf 366556870699981655339999999998703898684899972882438---3778--63665663788999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 9887543025667567999996200 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLG 178 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g 178 (352) +.+. ...++....++.... T Consensus 160 l~e~------~~~~e~~~~~a~~~~ 178 (303) T PRK07132 160 LLSQ------NKEKEFEKFYAYIFK 178 (303) T ss_pred HHHC------CCCCHHHHHHHHHHC T ss_conf 9864------775278999999974 No 71 >PRK09087 hypothetical protein; Validated Probab=97.88 E-value=0.0012 Score=43.10 Aligned_cols=188 Identities=11% Similarity=0.129 Sum_probs=113.2 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEE Q ss_conf 37887532100101384799956996589999999999733566677307762088964189999998717888888239 Q gi|254780804|r 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 (352) Q Consensus 6 ~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~kl 85 (352) +.+++..... |- .+..++||+..--+....+...+.... ..++...+..+. .+ ....+. T Consensus 32 a~~~l~~~~~--w~-~~~~~L~Gp~gsGKTHL~~~~~~~~~a--------~~~~~~~~~~~~---~~-------~~~~~~ 90 (226) T PRK09087 32 AVSLVDRWPN--WP-SPVVVLAGPVGSGKTHLASIWREKADA--------LLVHPNEIGSDA---AN-------AAAERP 90 (226) T ss_pred HHHHHHHCCC--CC-CCEEEEECCCCCCHHHHHHHHHHHHCC--------EEECHHHCCHHH---HH-------HHCCCC T ss_conf 9999984726--77-775899899999886999999998099--------683668747466---76-------532798 Q ss_pred EEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9984774104578988988510-56560799985265431--13566765431121014664420013588988754302 Q gi|254780804|r 86 ILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 (352) Q Consensus 86 Iii~~~~~~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~--~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g 162 (352) +++++.....-..+.+-.++.. ...+..+++.+...... -++..+...-..+..+...++++..+...+.+.+...| T Consensus 91 ~~idd~d~~~~dEe~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SRL~~~~~~~I~~pdD~ll~~~L~k~~~~r~ 170 (226) T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSRLKAATVVEIGEPDDALLSGVIFKLFADRQ 170 (226) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 89974877774789999999999853987999889895666762468999985785798359998999999999987576 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCC Q ss_conf 566756799999620012355689999997510-3444348888877531012 Q gi|254780804|r 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTH 214 (352) Q Consensus 163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~~~~ 214 (352) +.++++++.||+.++.-++..+..-+++|--++ ..+++||.--|.+++..-. T Consensus 171 l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~ITiplikevL~~l~ 223 (226) T PRK09087 171 LYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRITRALAAEVLNEMG 223 (226) T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC T ss_conf 57888899999984588999999999999999998189998999999998511 No 72 >KOG2028 consensus Probab=97.87 E-value=0.0026 Score=40.97 Aligned_cols=239 Identities=12% Similarity=0.133 Sum_probs=136.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH-HHCCHHHHHHHHHCCCCCCCCE-EE Q ss_conf 875321001013847999569965899999999997335666773077620889-6418999999871788888823-99 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEINSTSLFSKKK-II 86 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e-~~~d~~~l~~~~~t~slF~~~k-lI 86 (352) .+.+..++..... .++||+.---+...+..|.+...... +..+.+.... -+.|...+++.....-.+..+| ++ T Consensus 152 llrs~ieq~~ipS--mIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTil 226 (554) T KOG2028 152 LLRSLIEQNRIPS--MILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTIL 226 (554) T ss_pred HHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 8999987088870--58866998765889999986057774---279997414566188999999988787652440698 Q ss_pred EEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH------ Q ss_conf 9847741-045789889885105656079998526543113566765431121014664420013588988754------ Q gi|254780804|r 87 LIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL------ 159 (352) Q Consensus 87 ii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~------ 159 (352) +++...- .|...+.+.. ..-...++++-+..-.++-.+-..+ ...+-++...++..+.+...+..-.. T Consensus 227 FiDEiHRFNksQQD~fLP---~VE~G~I~lIGATTENPSFqln~aL--lSRC~VfvLekL~~n~v~~iL~raia~l~dse 301 (554) T KOG2028 227 FIDEIHRFNKSQQDTFLP---HVENGDITLIGATTENPSFQLNAAL--LSRCRVFVLEKLPVNAVVTILMRAIASLGDSE 301 (554) T ss_pred EEHHHHHHHHHHHHCCCC---EECCCCEEEEECCCCCCCCCHHHHH--HHCCCEEEECCCCHHHHHHHHHHHHHHHCCCC T ss_conf 737765532321100342---1306706998536689760112778--73160667336888999999999987632102 Q ss_pred H------C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC---C--CCCCCCHHHHHHHHHCCC------C----C Q ss_conf 3------0-2566756799999620012355689999997-510---3--444348888877531012------2----1 Q gi|254780804|r 160 I------G-QKSISKEAKQILLANLGGDRIASRNELQKLS-SYC---L--EDILITEQHVKDIICDTH------V----L 216 (352) Q Consensus 160 ~------~-g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~-ly~---~--~~~~It~~dI~~~v~~~~------~----~ 216 (352) + + -..++..++++|+..+.+|.+...|.||-.. .++ + .+..++.+||.+.+..+. . . T Consensus 302 r~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYn 381 (554) T KOG2028 302 RPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYN 381 (554) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCEECCCCHHHHH T ss_conf 56889998312456889999987047318888778999999887524776564002888999985312000455305778 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 11467888764102369999999853110001458999999 Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 (352) Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~ 257 (352) .|..|-.++-.||...++.++.++++.|++|+.+-+.+.|. T Consensus 382 tISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ 422 (554) T KOG2028 382 TISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRF 422 (554) T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999876017765527999999971688707999999987 No 73 >PRK06620 hypothetical protein; Validated Probab=97.75 E-value=0.0017 Score=42.25 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=108.3 Q ss_pred HHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC Q ss_conf 37887532100--1013847999569965899999999997335666773077620889641899999987178888882 Q gi|254780804|r 6 SHKFIQKSTKN--LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 (352) Q Consensus 6 ~~~~~~~~~~~--~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352) ++++++.-.+. ..-.+...++||+..--+....+...+.... ........ .+. ++... T Consensus 27 A~~~i~~wp~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a--------~~~~~~~~---~~~---------~~~~~ 86 (214) T PRK06620 27 AYNIIKNWQCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIKDIFF---NEE---------ILEKY 86 (214) T ss_pred HHHHHHHCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------EEECHHHC---CHH---------HHHHC T ss_conf 99999836302566865555999879999889999999998285--------88151214---587---------88437 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 399984774104578988988510-5656079998526543113566765431121014664420013588988754302 Q gi|254780804|r 84 KIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 (352) Q Consensus 84 klIii~~~~~~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g 162 (352) ..+++++...... +.+..++.. ...+..+++.+......-++..+...-+.+..+...++++..+...+.+.+...| T Consensus 87 ~~~iiddid~~~e--~~lfhlfN~~~~~~~~llits~~~p~~~~L~DL~SRl~~~~~~~i~~PdD~l~~~ll~k~~~~r~ 164 (214) T PRK06620 87 NAFIIEDIENWQE--PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214) T ss_pred CCEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCC T ss_conf 9379846775746--79999999997159879998279852245357899985464433269898999999999999869 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHH Q ss_conf 566756799999620012355689999997510-3444348888877531 Q gi|254780804|r 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIIC 211 (352) Q Consensus 163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~ 211 (352) +.++++.++||+.+++-++..+..-+++|--++ ..+++||..-+.+++. T Consensus 165 i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~Iti~likevL~ 214 (214) T PRK06620 165 VTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214 (214) T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC T ss_conf 98875599999998517899999999999999998399988999999839 No 74 >pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Probab=97.58 E-value=0.0032 Score=40.31 Aligned_cols=164 Identities=10% Similarity=0.148 Sum_probs=96.5 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHH Q ss_conf 138479995699658999999999973356667730776208896418999999871788888823999847741-0457 Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKV 97 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~ 97 (352) +.| .||||+.---+-..++.+.+.... +.....+..+. ....+...+ .-...+.+++|+...- .|.. T Consensus 50 l~h--~lf~GPPG~GKTTlAriiAk~~~~------~~~~~s~~~i~-~~~di~~~l---~~~~~~~ILFIDEIHr~nK~q 117 (234) T pfam05496 50 LDH--VLLYGPPGLGKTTLANIIANEMGV------NIRITSGPALE-KPGDLAAIL---TNLEPGDVLFIDEIHRLNRAV 117 (234) T ss_pred CCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEECCHHHH-HHHHHHHHH---HHCCCCCEEEEECHHHCCHHH T ss_conf 662--788789999888999999984087------53761426664-389999999---845899889996654358768 Q ss_pred HHHHHHHHHC----------CCCCE-------EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 8988988510----------56560-------799985265431135667654311210146644200135889887543 Q gi|254780804|r 98 LDCLEEIIIK----------NICNH-------IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352) Q Consensus 98 ~~~l~~~~~~----------~~~~~-------~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352) .+.|..++++ |+..+ +.++-|.- ...++-..+ .+...++..+.+.+..++...++..++. T Consensus 118 qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATT--e~~~l~~pl-~sR~~i~~~l~~l~~edl~~il~r~~~~ 194 (234) T pfam05496 118 EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATT--RAGLLTSPL-RDRFGIVLRLEFYSVEELEEIVKRSARI 194 (234) T ss_pred HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECC--CCCCCCHHH-HHHHHHEEECCCCCHHHHHHHHHHHHHH T ss_conf 8744553346169999636766324652689759985215--666477779-9762112442468999999999999998 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 0256675679999962001235568999999751034 Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 (352) Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~ 197 (352) .|++++++|+.+++..++||.+...|-|++..-|+.- T Consensus 195 l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~ 231 (234) T pfam05496 195 LGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQV 231 (234) T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 3999599999999997799899998999999999987 No 75 >KOG0990 consensus Probab=97.40 E-value=0.012 Score=36.58 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=141.1 Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC-C----CCEEEEEEHHHHHCCHHHHHHHHHCCCCCCC---CEEEE Q ss_conf 01013847999569965899999999997335666-7----7307762088964189999998717888888---23999 Q gi|254780804|r 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-D----PFSLVVLNALEIQKNISTFWNEINSTSLFSK---KKIIL 87 (352) Q Consensus 16 ~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~-~----~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~---~klIi 87 (352) ...++| -|+||+...-.--.+......+..+.+ . ++|...=.|-++.......+....++..|+. -|+|| T Consensus 59 ~~~lPh--~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvI 136 (360) T KOG0990 59 MPGLPH--LLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVI 136 (360) T ss_pred CCCCCC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEE T ss_conf 888975--343489988998736665665058998246999864367668861478889877641640002467615887 Q ss_pred EECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 847741-0457898898851056560799985265431135667654311210146644200135889887543025667 Q gi|254780804|r 88 IENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166 (352) Q Consensus 88 i~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~ 166 (352) ++.+.. ..+...+|...++.-..++.+.+.+....+-+.- ....+.-.++.|++......-+.+......+.++ T Consensus 137 LDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa-----~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~ 211 (360) T KOG0990 137 LDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPA-----QQSRCTRFRFAPLTMAQQTERQSHIRESEQKETN 211 (360) T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCH-----HHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCC T ss_conf 33413766989999999998713323799861676446814-----6410445787888754424678888715311038 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5679999962001235568999999751034443--4888887753101221114678887641023699999998531 Q gi|254780804|r 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDIL--ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 (352) Q Consensus 167 ~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~--It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~ 243 (352) ++....++..+-+|++...|-|+-...+.....+ ++.++|..+.+.....++-+++..++.+....+..-+..+... T Consensus 212 ~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~ 290 (360) T KOG0990 212 PEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKP 290 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 7889999998677799999999999998577787777215678714999766799999997228249887525654033 No 76 >KOG2035 consensus Probab=97.09 E-value=0.025 Score=34.40 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=136.5 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCC---------------CCCCEEEEEEH--------HHHH-CC----HHHHHHH Q ss_conf 4799956996589999999999733566---------------67730776208--------8964-18----9999998 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITY---------------HDPFSLVVLNA--------LEIQ-KN----ISTFWNE 73 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~---------------~~~~~~~~~~~--------~e~~-~d----~~~l~~~ 73 (352) +=+++||+.-.-+...+--+.+.+-+.+ +.-.++..... .+.. .| .+-+-+- T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351) T KOG2035 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHHH T ss_conf 70788888988721118999998857872450566678864888637999942565177473433751179999999998 Q ss_pred HHCCCCCC----CCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCC Q ss_conf 71788888----823999847741-0457898898851056560799985265431135667654-31121014664420 Q gi|254780804|r 74 INSTSLFS----KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNK 147 (352) Q Consensus 74 ~~t~slF~----~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~ 147 (352) ++|.++-. +-|+|++..+.. .++...+|-.-.++-..++-+|+..+..++ .++. ...+..|.+..++. T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr------iIepIrSRCl~iRvpaps~ 188 (351) T KOG2035 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR------IIEPIRSRCLFIRVPAPSD 188 (351) T ss_pred HHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------CHHHHHHHEEEEECCCCCH T ss_conf 7414133326665489998035765088999999999998607169999267430------2267762205876789987 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352) .++...+...++++|+.+..+.+..+++.+++|++...=-+|-...- +.+-+.+- ..+....=+.-+-++.+.+.. T Consensus 189 eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~---n~~~~a~~-~~i~~~dWe~~i~e~a~~i~~ 264 (351) T KOG2035 189 EEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVN---NEPFTANS-QVIPKPDWEIYIQEIARVILK 264 (351) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCCCC-CCCCCCCHHHHHHHHHHHHHH T ss_conf 89999999999873344849999999997064399999999999854---65432557-877994499999999999986 Q ss_pred HHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 102369----9999998531100014589999999 Q gi|254780804|r 228 GKIYNA----IMLADFFLASKMPSHALLHGFLQKF 258 (352) Q Consensus 228 ~~~~~a----~~~l~~l~~~g~~~~~il~~L~~~f 258 (352) .+...- -..+-+|+....||-.|+.-|..++ T Consensus 265 eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~L 299 (351) T KOG2035 265 EQSPAKLLEVRGRLYELLSHCIPPNTILKELLEEL 299 (351) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 03878899999999999865698588999999999 No 77 >KOG1969 consensus Probab=96.94 E-value=0.034 Score=33.50 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=121.7 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCC---HHHHHHHHHCCCCC---CCCEEEEEECCCC-H Q ss_conf 479995699658999999999973356667730776208896418---99999987178888---8823999847741-0 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN---ISTFWNEINSTSLF---SKKKIILIENLST-E 94 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d---~~~l~~~~~t~slF---~~~klIii~~~~~-~ 94 (352) .|-|++|+--.-+...+.-+.++.+ |.++.+.+.+-... -+.+.+.+.+-|.. +...+++++...+ . T Consensus 327 KilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877) T KOG1969 327 KILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877) T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC------CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC T ss_conf 0687536887872479999998628------5488732555434788999999988641122568886359984246872 Q ss_pred HHHHHHHHHHHHC-------CCC--------------CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 4578988988510-------565--------------6079998526543113566765431121014664420013588 Q gi|254780804|r 95 KKVLDCLEEIIIK-------NIC--------------NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 95 k~~~~~l~~~~~~-------~~~--------------~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) ....+.+...+.. +.. .-.+|....++- .-.++.+- ..+.++.|.++....+..- T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-aPaLR~Lr---~~A~ii~f~~p~~s~Lv~R 476 (877) T KOG1969 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-APALRPLR---PFAEIIAFVPPSQSRLVER 476 (877) T ss_pred HHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCC-CHHHHHCC---CCEEEEEECCCCHHHHHHH T ss_conf 8999999999974161421686632034555304654587789864755-53333102---1048999569976689999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHCCC--CCCHHHHHHHHHH Q ss_conf 98875430256675679999962001235568999999751034-44348888877531012--2111467888764 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-DILITEQHVKDIICDTH--VLYIEEIINATIQ 227 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~-~~~It~~dI~~~v~~~~--~~~if~L~dai~~ 227 (352) +++.+..+|.+++..++..|++.+.+|.+...|-|+=|+.-... +..|+..+|.+...... ..++|++.-.+++ T Consensus 477 L~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~q 553 (877) T KOG1969 477 LNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIFQ 553 (877) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 99997641577887899999998613098888899999970444344311221133330244564336899999988 No 78 >pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function. Probab=96.89 E-value=0.037 Score=33.27 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=104.1 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC--H----HHH Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741--0----457 Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST--E----KKV 97 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~--~----k~~ 97 (352) .|+||.--.-+...++.+...+..++ ..++..+-.++ .+...+++.+...|. +=+|.+++.+- . +.. T Consensus 56 vLLwG~RGtGKSSlVKall~~~~~~g---LrlIEv~k~~L-~~Lp~i~~~l~~~~~---kFIiF~DDLSFe~~d~~yk~L 128 (248) T pfam05673 56 VLLWGARGTGKSSLVKALLNEYADQG---LRLIEVDKDDL-GDLPDIVDLLRGRPY---RFILFCDDLSFEEGESSYKAL 128 (248) T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEECHHHH-CCHHHHHHHHHCCCC---CEEEEECCCCCCCCCHHHHHH T ss_conf 67676898988899999999863149---56999878887-219999999964997---579996355767897369999 Q ss_pred HHHHHHHHHCCCCCEEEEEEECC----------------CCCCHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf 89889885105656079998526----------------543113566765-4311210146644200135889887543 Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNE----------------IKKNNTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352) Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~----------------l~k~~kl~k~~e-~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352) ...|+--++.+|+++.+..++.. +.....+--.+. ....+..+.||+.+..+.-..|+.+++. T Consensus 129 Ks~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~~~~~ei~~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 208 (248) T pfam05673 129 KSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDNEGDGEIHPGDAVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRGYAAR 208 (248) T ss_pred HHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 99965764468873899984270003633323477744367255777453489867717850799999999999999998 Q ss_pred CCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02566756-----7999996200123556899999 Q gi|254780804|r 161 GQKSISKE-----AKQILLANLGGDRIASRNELQK 190 (352) Q Consensus 161 ~g~~i~~~-----a~~~L~~~~g~d~~~l~~EleK 190 (352) +|+.++++ |+..=..+-+-.-+...|=+.- T Consensus 209 ~~~~~~~e~l~~~Al~wa~~rg~rSGR~A~QFi~~ 243 (248) T pfam05673 209 LGLPLDEEELRREALQWALTRGGRSGRTARQFIDD 243 (248) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 29999989999999999998389858879999999 No 79 >PRK06581 DNA polymerase III subunit delta'; Validated Probab=96.87 E-value=0.0092 Score=37.31 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=69.1 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------CCCEEEEEEHH------HH-HCCHHHHHHHHH Q ss_conf 875321001013847999569965899999999997335666------77307762088------96-418999999871 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNAL------EI-QKNISTFWNEIN 75 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------~~~~~~~~~~~------e~-~~d~~~l~~~~~ 75 (352) .+++.-+|.-+.|. |||.|++.-..-+.+.++........+ .++.+.+.+.. .+ .+.+..+.+.+. T Consensus 4 ~L~n~lknnKlsns-~l~~~~N~~~~l~~~~~fi~~~~~~~~~~le~~pd~~~i~~~~~~~sn~KnI~IdQIR~L~~fl~ 82 (263) T PRK06581 4 RLEFNLKHNKLYNS-WLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLN 82 (263) T ss_pred HHHHHHHCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 89888741324466-64307886799999999999998626865235832888742034566567357999999999963 Q ss_pred CCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCC Q ss_conf 7888888239998477410-457898898851056560799985265 Q gi|254780804|r 76 STSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEI 121 (352) Q Consensus 76 t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l 121 (352) ..|.-|+.|+++|+++... .....+|...++.||.++++++.+... T Consensus 83 ~ts~~s~~KV~IId~Ae~mn~~AaNALLK~LEEPP~nt~iiLiT~~~ 129 (263) T PRK06581 83 KTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSRA 129 (263) T ss_pred HCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCH T ss_conf 47546894599994767749898998998741898782899986982 No 80 >TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC.. Probab=96.40 E-value=0.08 Score=31.08 Aligned_cols=200 Identities=11% Similarity=0.148 Sum_probs=125.7 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC----CCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCC- Q ss_conf 8875321001013847999569965899999999997335----66677307762088964189999998717888888- Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI----TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK- 82 (352) Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~----~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~- 82 (352) .++.+.-+.+=+ | .++||+.---+-..++......+. +...+-+.+..||..+.|||.++ |-||.|. T Consensus 166 aLlaK~aSPfPQ-H--iiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREv-----TNPLLGSV 237 (616) T TIGR02903 166 ALLAKLASPFPQ-H--IILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREV-----TNPLLGSV 237 (616) T ss_pred HHHHHHCCCCCC-C--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-----CCCCCCCC T ss_conf 999763188866-0--785573388478999998762136874476113785751576266774101-----47767762 Q ss_pred --------CE-----------EEEEECCCC------H-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-----HHHHHH Q ss_conf --------23-----------999847741------0-4578988988510565607999852654311-----356676 Q gi|254780804|r 83 --------KK-----------IILIENLST------E-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN-----TLRKIA 131 (352) Q Consensus 83 --------~k-----------lIii~~~~~------~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~-----kl~k~~ 131 (352) || .=+|.+|.+ . -...-.|+.-+.+-..|--+-|.|.-.++.+ -++++| T Consensus 238 HDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lF 317 (616) T TIGR02903 238 HDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLF 317 (616) T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHH T ss_conf 57655676401104787989898710047756765021122278763244432264366532124875378655888852 Q ss_pred HHH-----------------------HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HHHH Q ss_conf 543-----------------------112101466442001358898875430256675679999962001235--5689 Q gi|254780804|r 132 EKF-----------------------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI--ASRN 186 (352) Q Consensus 132 e~~-----------------------~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~--~l~~ 186 (352) |+- ..|..|=|-|++..++...|.+.+.+.|..+.++.-..++.++=.-+. .+-. T Consensus 318 e~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~AA~klnv~L~~gV~e~Ia~YTieGRkAvnILA 397 (616) T TIGR02903 318 EEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLNAAEKLNVKLAEGVEELIARYTIEGRKAVNILA 397 (616) T ss_pred CCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHH T ss_conf 26888256872661588244051233014313217988789999999988861770003648787214713112223465 Q ss_pred HHHHHHHHCC-------CCCCCCHHHHHHHHHCCCC Q ss_conf 9999975103-------4443488888775310122 Q gi|254780804|r 187 ELQKLSSYCL-------EDILITEQHVKDIICDTHV 215 (352) Q Consensus 187 EleKL~ly~~-------~~~~It~~dI~~~v~~~~~ 215 (352) -.-=+++|.. ++=+|+.+||..+|+.++- T Consensus 398 D~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl 433 (616) T TIGR02903 398 DVYGYALYKKAEALKEEDKVTITADDVKEVVQISRL 433 (616) T ss_pred HHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCC T ss_conf 467676530455567777426618677767753045 No 81 >PRK00411 cdc6 cell division control protein 6; Reviewed Probab=96.39 E-value=0.082 Score=31.02 Aligned_cols=208 Identities=13% Similarity=0.104 Sum_probs=114.8 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCH----HHHHHHHHCCC------ Q ss_conf 87532100101384799956996589999999999733566677307762088964189----99999871788------ Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI----STFWNEINSTS------ 78 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~----~~l~~~~~t~s------ 78 (352) +++..-.+- ...++| +||+.---+.-.++.+.+.+... ..++.....++.... .+ ..+.+.+.-.+ T Consensus 45 ~l~~~l~g~-~~~n~~-I~G~pGTGKT~~vk~v~~~l~~~-~~~~~~vyINc~~~~-t~~~i~~~i~~~L~~~~~p~~G~ 120 (394) T PRK00411 45 ALRPALRGS-RPSNVL-ILGPPGTGKTTTVKKVFEELEEA-ALKVVYVYINCQIDR-TRYAILSEIARSLFGHPPPSSGL 120 (394) T ss_pred HHHHHHCCC-CCCCEE-EECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999997599-998479-98899998999999999999974-689659999696689-89999999999956998987787 Q ss_pred -----------CC---CCCEEEEEECCCCH--HHHHHHHHHHHHCC----CCCEEEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf -----------88---88239998477410--45789889885105----656079998526543113566765431121 Q gi|254780804|r 79 -----------LF---SKKKIILIENLSTE--KKVLDCLEEIIIKN----ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 (352) Q Consensus 79 -----------lF---~~~klIii~~~~~~--k~~~~~l~~~~~~~----~~~~~li~~a~~l~k~~kl~k~~e~~~~~~ 138 (352) .+ +..-+|++++.... +...+.|-.++..| .....+|..+..++-...+-.-....-.-. T Consensus 121 s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv~S~l~~~ 200 (394) T PRK00411 121 SFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFGPE 200 (394) T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCE T ss_conf 89999999999861669758999965540203665089999985402268873899999768717766407775027862 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC--CCCCCCCHHHHHHHHH Q ss_conf 01466442001358898875430--25667567999996200123556899999975---10--3444348888877531 Q gi|254780804|r 139 AISCYPDNKIHLMDLIEESLLIG--QKSISKEAKQILLANLGGDRIASRNELQKLSS---YC--LEDILITEQHVKDIIC 211 (352) Q Consensus 139 ~v~~~~~~~~~l~~~i~~~~~~~--g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l---y~--~~~~~It~~dI~~~v~ 211 (352) .+.|.|=+..++...+..+++.. .-.++++++.+.+..++.+...+...|+=|.. .+ .+.+.||.++|..... T Consensus 201 ~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~~~GDaR~Aldllr~A~e~Ae~~g~~~Vt~~hV~~A~~ 280 (394) T PRK00411 201 EIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGREHGDARVAIDLLRRAGEIAEREGSRKVTEEDVRKAYE 280 (394) T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 89858999899999999999841455678978999999998550475899999999999999971899658999999999 Q ss_pred CCCCCCHHH Q ss_conf 012211146 Q gi|254780804|r 212 DTHVLYIEE 220 (352) Q Consensus 212 ~~~~~~if~ 220 (352) ......+-+ T Consensus 281 ~~~~~~~~~ 289 (394) T PRK00411 281 KSEPVHLEE 289 (394) T ss_pred HHHCCHHHH T ss_conf 860000889 No 82 >pfam03215 Rad17 Rad17 cell cycle checkpoint protein. Probab=95.31 E-value=0.23 Score=28.07 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=102.6 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCC---C-------C--EEEEEEHHH------HHCCHHHHHHHHHC---CCC Q ss_conf 8479995699658999999999973356667---7-------3--077620889------64189999998717---888 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHD---P-------F--SLVVLNALE------IQKNISTFWNEINS---TSL 79 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~---~-------~--~~~~~~~~e------~~~d~~~l~~~~~t---~sl 79 (352) +.+-+++|+----+...++.+.+.++.+--+ + + ....+.+.. -...+..|.-...- ++. T Consensus 45 ~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~ 124 (490) T pfam03215 45 QLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQG 124 (490) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 31899879899889999999999759689981486545677502210121234576666377776788762233565445 Q ss_pred C-CCCEEEEEECCCC-----HHHHHHHHHHHHHCCC-CCEEEEEEE-CCCCC-CH------HHHHH----HHHHHHHHHC Q ss_conf 8-8823999847741-----0457898898851056-560799985-26543-11------35667----6543112101 Q gi|254780804|r 80 F-SKKKIILIENLST-----EKKVLDCLEEIIIKNI-CNHIIIIKS-NEIKK-NN------TLRKI----AEKFTSVLAI 140 (352) Q Consensus 80 F-~~~klIii~~~~~-----~k~~~~~l~~~~~~~~-~~~~li~~a-~~l~k-~~------kl~k~----~e~~~~~~~v 140 (352) - +.+|+|+|++... .....+.|..|+.... .-.++|+.- ..+.- .+ ....+ +-.+..+..| T Consensus 125 ~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i~~I 204 (490) T pfam03215 125 GGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRIDTI 204 (490) T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEE T ss_conf 78873599996588744236699999999999708999879999704666677643323210786359888708896369 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 466442001358898875430256---67567999996200123556899999975 Q gi|254780804|r 141 SCYPDNKIHLMDLIEESLLIGQKS---ISKEAKQILLANLGGDRIASRNELQKLSS 193 (352) Q Consensus 141 ~~~~~~~~~l~~~i~~~~~~~g~~---i~~~a~~~L~~~~g~d~~~l~~EleKL~l 193 (352) .|.|.....|.+.+...+.+++.. .....++.|++.++||.+.+.|-|+=.++ T Consensus 205 ~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQF~~~ 260 (490) T pfam03215 205 TFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSAINSLQFSSS 260 (490) T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 86888788999999999998576556752038999998648729999999998626 No 83 >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. Probab=94.92 E-value=0.29 Score=27.33 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=83.9 Q ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHH-HHH--HHHHHHCCCCCCCCHHHHHH Q ss_conf 888239998477410-4578988988510--56560799985265431135667-654--31121014664420013588 Q gi|254780804|r 80 FSKKKIILIENLSTE-KKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKI-AEK--FTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 80 F~~~klIii~~~~~~-k~~~~~l~~~~~~--~~~~~~li~~a~~l~k~~kl~k~-~e~--~~~~~~v~~~~~~~~~l~~~ 153 (352) =+.+-+++|+++... ....+.|..+..- .....+-++..+.-+-..++..- ... ......+...|.+..+...+ T Consensus 121 ~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~Y 200 (269) T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269) T ss_pred CCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHH T ss_conf 69946999724221999999999999701358887048999578679998727402545550767998479998999999 Q ss_pred HHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHC Q ss_conf 9887543025----667567999996200123556899999975--1034443488888775310 Q gi|254780804|r 154 IEESLLIGQK----SISKEAKQILLANLGGDRIASRNELQKLSS--YCLEDILITEQHVKDIICD 212 (352) Q Consensus 154 i~~~~~~~g~----~i~~~a~~~L~~~~g~d~~~l~~EleKL~l--y~~~~~~It~~dI~~~v~~ 212 (352) |+.+++..|. -++++|++.+.+.++|..+.+.+=.++-.+ |..+.+.|+.+.|..++.+ T Consensus 201 I~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN~Lc~~aLl~a~~~~~~~I~~~~v~~~~~e 265 (269) T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269) T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999866999999859999999999869900899999999999999948886799999999997 No 84 >pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family. Probab=94.79 E-value=0.32 Score=27.10 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=88.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH--HH--------------------------------CC Q ss_conf 847999569965899999999997335666773077620889--64--------------------------------18 Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQ--------------------------------KN 66 (352) Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e--~~--------------------------------~d 66 (352) +.+.++||.-..-+...++++.+.....+ +....++..+ .. .+ T Consensus 20 ~~~ivi~G~RR~GKTsLi~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (223) T pfam01637 20 YPIIVVYGPRRCGKTALLREFLEELRELG---YRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGIAKSKLAFLS 96 (223) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 71899986887879999999998633468---528999514443799999888889999998765123322211207889 Q ss_pred HHHHHHHHHCCCCCCCCE-EEEEECCCCH------HHHHHHHHHHHHCC--CCCEEEEEEECCCCCCHHHHHHHHHH--- Q ss_conf 999999871788888823-9998477410------45789889885105--65607999852654311356676543--- Q gi|254780804|r 67 ISTFWNEINSTSLFSKKK-IILIENLSTE------KKVLDCLEEIIIKN--ICNHIIIIKSNEIKKNNTLRKIAEKF--- 134 (352) Q Consensus 67 ~~~l~~~~~t~slF~~~k-lIii~~~~~~------k~~~~~l~~~~~~~--~~~~~li~~a~~l~k~~kl~k~~e~~--- 134 (352) ++.++..+.. .+++ +|++++++.. +.....+....... ..++.+|+++.... -+.+.+... T Consensus 97 l~~~~~~l~~----~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS~~~---~m~~~~~~~~pl 169 (223) T pfam01637 97 LTLLFELLKR----KGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGSSEG---LTIELLDYKSPL 169 (223) T ss_pred HHHHHHHHHH----CCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHCCCCCC T ss_conf 9999999985----599659997016776402443059999999999752457758999727199---999986205653 Q ss_pred -HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf -112101466442001358898875430256675679999962001235568 Q gi|254780804|r 135 -TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 (352) Q Consensus 135 -~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~ 185 (352) +....+...|.+..+..+++++.+++.|..++++.+..+...+||....+. T Consensus 170 ygR~~~i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~yL~ 221 (223) T pfam01637 170 YGRHRWALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPGYLE 221 (223) T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH T ss_conf 5750227726899899999999999984789998999999999698389984 No 85 >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Probab=94.57 E-value=0.36 Score=26.77 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=99.0 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEE-EEEECCCC------HHH Q ss_conf 99956996589999999999733566677307762088964189999998717888888239-99847741------045 Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI-ILIENLST------EKK 96 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~kl-Iii~~~~~------~k~ 96 (352) +|+||.--.-+...++.+...+...+. .++..+-+++. +.-.+++.+...| .|. |.+++.+- -|. T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~dl~-~Lp~l~~~Lr~~~----~kFIlFcDDLSFe~gd~~yK~ 159 (287) T COG2607 88 VLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKEDLA-TLPDLVELLRARP----EKFILFCDDLSFEEGDDAYKA 159 (287) T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEECHHHHH-HHHHHHHHHHCCC----CEEEEEECCCCCCCCCHHHHH T ss_conf 677637777747999999999874177---07997688886-5799999996188----608999567777778138999 Q ss_pred HHHHHHHHHHCCCCCEEEEEEECC---CC----CC--HH-----HHHHHHH----HHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 789889885105656079998526---54----31--13-----5667654----3112101466442001358898875 Q gi|254780804|r 97 VLDCLEEIIIKNICNHIIIIKSNE---IK----KN--NT-----LRKIAEK----FTSVLAISCYPDNKIHLMDLIEESL 158 (352) Q Consensus 97 ~~~~l~~~~~~~~~~~~li~~a~~---l~----k~--~k-----l~k~~e~----~~~~~~v~~~~~~~~~l~~~i~~~~ 158 (352) ....|+--++..|.++++.-+++. ++ .+ ++ --..-|+ ...+..+.|||.+..+.-..|..++ T Consensus 160 LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a 239 (287) T COG2607 160 LKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYA 239 (287) T ss_pred HHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHHHH T ss_conf 99985388556887079997158753362766427784023580677877625464234045036878899999999999 Q ss_pred HHCCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHH Q ss_conf 43025667567999-----99620012355689999997 Q gi|254780804|r 159 LIGQKSISKEAKQI-----LLANLGGDRIASRNELQKLS 192 (352) Q Consensus 159 ~~~g~~i~~~a~~~-----L~~~~g~d~~~l~~EleKL~ 192 (352) +..|+.++++.+.. =..+-|-+-+...|-+.-++ T Consensus 240 ~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~ 278 (287) T COG2607 240 KHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLA 278 (287) T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 985999887899999999998618984275999999998 No 86 >PTZ00112 origin recognition complex 1 protein; Provisional Probab=94.55 E-value=0.36 Score=26.73 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=114.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHH----HHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHH----HHCC- Q ss_conf 78875321001013847999569965----89999999999733566677307762088964189999998----7178- Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKG----LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----INST- 77 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~----l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~----~~t~- 77 (352) +.|++...++-=....+| +.|-.-- -+.+.++.+......+.-.+|..+.+.|-.+. +|...+.. +... T Consensus 280 ~~Fie~~i~q~GtG~cLY-ISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt-~P~qaY~~L~e~Ltg~k 357 (650) T PTZ00112 280 RTFLETGIKQGGTGQILY-ISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLV-HPNAAYRVFYKKLFNKK 357 (650) T ss_pred HHHHHHHCCCCCCCCEEE-EECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECC-CHHHHHHHHHHHHHCCC T ss_conf 999986411688665699-9789999800369999999999997089998159997363779-87889999999984898 Q ss_pred ------------CCCCCC---EEEEEECCCCH-HHHHHHHHHHHHCCCC-CEEEEE--EECCCCCCHHHHHHHHHHHHHH Q ss_conf ------------888882---39998477410-4578988988510565-607999--8526543113566765431121 Q gi|254780804|r 78 ------------SLFSKK---KIILIENLSTE-KKVLDCLEEIIIKNIC-NHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 (352) Q Consensus 78 ------------slF~~~---klIii~~~~~~-k~~~~~l~~~~~~~~~-~~~li~--~a~~l~k~~kl~k~~e~~~~~~ 138 (352) -.|+.+ .+++++...-. .+..+.+-.++.+|.. +..||+ .|.-++-..++..-+...-... T Consensus 358 ~~~~~~A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGlt 437 (650) T PTZ00112 358 PPNALNSYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAFG 437 (650) T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 88678999999998268997189997157777636774577736688988870799998506786065666655522885 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 0146644200135889887543025667567999996200123556899999--97510344434888887753101221 Q gi|254780804|r 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK--LSSYCLEDILITEQHVKDIICDTHVL 216 (352) Q Consensus 139 ~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleK--L~ly~~~~~~It~~dI~~~v~~~~~~ 216 (352) -+.|.|=+..++.+.|..++...+ -++++|+++.+.++.+=...++..|+= -+.=......|+..|+........+. T Consensus 438 RltF~PYt~~QL~eII~sRL~~~~-~f~~dAIQl~ARKVAavSGDARRALdICRRAvE~~~~~ki~~~~i~~a~n~~~ns 516 (650) T PTZ00112 438 RLVFSPYKYQQIEKVIKERLENCE-IIDHTALQLCARRVTNYSGDMRKALQICKLAFENKNGGKITPRDMTRASNMVLDS 516 (650) T ss_pred EECCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCC T ss_conf 004399899999999999862677-7887899999888875031489999999999973568734248999998888540 Q ss_pred CH Q ss_conf 11 Q gi|254780804|r 217 YI 218 (352) Q Consensus 217 ~i 218 (352) .+ T Consensus 517 ~~ 518 (650) T PTZ00112 517 PL 518 (650) T ss_pred HH T ss_conf 88 No 87 >KOG1970 consensus Probab=94.25 E-value=0.42 Score=26.31 Aligned_cols=217 Identities=15% Similarity=0.137 Sum_probs=118.5 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----------------CCEEEEEEHHHHHCCHHHHHHHH---HC--- Q ss_conf 138479995699658999999999973356667----------------73077620889641899999987---17--- Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHD----------------PFSLVVLNALEIQKNISTFWNEI---NS--- 76 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----------------~~~~~~~~~~e~~~d~~~l~~~~---~t--- 76 (352) +.+.|-|++|+----+...++.+.+.++...-+ ++.....+...+. -.+.+.... .+ T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~ 186 (634) T KOG1970 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQM 186 (634) T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHH-HHHHHHHHHHHHCHHHH T ss_conf 67607998579888713199999986480212304776656655545544001330366789-99989999876231653 Q ss_pred --CCCCCCCEEEEEECCCC------HHHHHHHHHHHHHCCCCCEEEEEEECC----CCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf --88888823999847741------045789889885105656079998526----543113566765431121014664 Q gi|254780804|r 77 --TSLFSKKKIILIENLST------EKKVLDCLEEIIIKNICNHIIIIKSNE----IKKNNTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 77 --~slF~~~klIii~~~~~------~k~~~~~l~~~~~~~~~~~~li~~a~~----l~k~~kl~k~~e~~~~~~~v~~~~ 144 (352) ..+-+++++|+|.+... .....+.|..|...+---+++++.-.. ......+-+-+.....+..|.|.| T Consensus 187 ~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNP 266 (634) T KOG1970 187 SGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNP 266 (634) T ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCHHHHHHCCCCCEEEECC T ss_conf 13333467507985026144400369999999999984577767999863535787634342426565335852476157 Q ss_pred CCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCHHHHHHHHH Q ss_conf 4200135889887543025667------567999996200123556899999975103444-------348888877531 Q gi|254780804|r 145 DNKIHLMDLIEESLLIGQKSIS------KEAKQILLANLGGDRIASRNELQKLSSYCLEDI-------LITEQHVKDIIC 211 (352) Q Consensus 145 ~~~~~l~~~i~~~~~~~g~~i~------~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~-------~It~~dI~~~v~ 211 (352) ....-|++.+...+..++...+ ...++.++...|||.+.+.+-|+==+ -.|... .-..+++-.... T Consensus 267 Ia~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlss-skg~~~~~~~ks~rs~~s~~~kg~~ 345 (634) T KOG1970 267 IAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLSS-SKGENNLRPRKSGRSGKSDIGKGKS 345 (634) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCEECCCCC T ss_conf 767999999999999862666667675067999998752773999987753320-3576677754466556320002333 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0122111467888764102369999999 Q gi|254780804|r 212 DTHVLYIEEIINATIQGKIYNAIMLADF 239 (352) Q Consensus 212 ~~~~~~if~L~dai~~~~~~~a~~~l~~ 239 (352) ...+..-.+.+.+++.++ .++...+. T Consensus 346 ~~~~s~~nq~i~~ig~~d--e~L~~f~a 371 (634) T KOG1970 346 KRMESPENQELQSIGGRD--ESLFLFRA 371 (634) T ss_pred CCCCCCHHHHHHHHHCCH--HHHHHHHH T ss_conf 221364678999860430--77899886 No 88 >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Probab=92.62 E-value=0.77 Score=24.58 Aligned_cols=250 Identities=15% Similarity=0.104 Sum_probs=118.2 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH-------------CCCCCC--CCE Q ss_conf 38479995699658999999999973356667730776208896418999999871-------------788888--823 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-------------STSLFS--KKK 84 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~-------------t~slF~--~~k 84 (352) ++.=+||.||.---++..++.|- ......+.+|-.+ ++..+ ..+.+-+++. ...+|. +.= T Consensus 165 s~~~VLI~GEsGTGKe~~Ar~IH-~~S~r~~~pFv~v--nc~ai--~~~l~eseLFG~~kgaftga~~~~~G~~e~A~gG 239 (457) T PRK11361 165 SQASVLISGESGTGKELIARAIH-YNSRRAKGPFIKV--NCAAL--PESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457) T ss_pred CCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCCEEEE--ECCCC--CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC T ss_conf 89958998899857899999999-8379889983876--47879--8577899971876678788531469861335998 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHC----C-------CCCEEEEEEEC-CCCC---CHHHHHHHHHHHHHHHCCCCCCC-- Q ss_conf 999847741-04578988988510----5-------65607999852-6543---11356676543112101466442-- Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIK----N-------ICNHIIIIKSN-EIKK---NNTLRKIAEKFTSVLAISCYPDN-- 146 (352) Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~----~-------~~~~~li~~a~-~l~k---~~kl~k~~e~~~~~~~v~~~~~~-- 146 (352) -+++++.+. +......|..+++. + +-++-+|..+. ++.. ...++.-+-..-+++.+..+|+. T Consensus 240 TLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR 319 (457) T PRK11361 240 TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDR 319 (457) T ss_pred CEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCHHHHHHHHCEEEEECCCHHHC T ss_conf 26314664523999999999986492785699713665348996578785999875832388995302212517385458 Q ss_pred CHHHHHHHHH----HHHHCCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH Q ss_conf 0013588988----7543025---6675679999962-001235568999999751034443488888775310122111 Q gi|254780804|r 147 KIHLMDLIEE----SLLIGQK---SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 (352) Q Consensus 147 ~~~l~~~i~~----~~~~~g~---~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~i 218 (352) ..++..++.. +..++|. .++++|++.|..+ -.||.+.+.|-++...+.+. ...|+.+|+...+........ T Consensus 320 ~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ierav~~~~-~~~i~~~~l~~~~~~~~~~~~ 398 (457) T PRK11361 320 REDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS-GPIIFSEDLPPQIRQPVCNAG 398 (457) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCHHHCCHHHHCCCCCCC T ss_conf 7549999999999999974999898899999999569999799999999999998289-981566768486615556776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 46788876410236999999985311000145899999999999999983025689899998608999976899999998 Q gi|254780804|r 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 (352) Q Consensus 219 f~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~ 298 (352) - .+....++ .+ +......|.+-+....+... +-+..++...++.+ +..+.+-+ T Consensus 399 ~--~~~~~~~~----------------~~---l~~~~~~~Er~~i~~aL~~~-~gn~~~aA~~LGis-----R~tLyrKl 451 (457) T PRK11361 399 E--AKTAPVGE----------------RN---LKEEIKRVEKRIIMEVLEQQ-EGNRTRTALMLGIS-----RRALMYKL 451 (457) T ss_pred C--CCCCCCCC----------------CC---HHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCC-----HHHHHHHH T ss_conf 4--55677666----------------78---99999999999999999982-99899999998989-----99999999 Q ss_pred HCCC Q ss_conf 6499 Q gi|254780804|r 299 RIWN 302 (352) Q Consensus 299 ~~~s 302 (352) ++|+ T Consensus 452 kk~g 455 (457) T PRK11361 452 QEYG 455 (457) T ss_pred HHHC T ss_conf 9858 No 89 >pfam12213 Dpoe2NT DNA polymerases epsilon N terminal. This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam04042. There is a single completely conserved residue F that may be functionally important. This domain is the N terminal domain of DNA polymerase epsilon subunit B. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. This domain has close structural relation to AAA+ protein C terminal domains. Probab=90.62 E-value=0.66 Score=24.99 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 01358898875430256675679999962001-2355689999997510344434888887753 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352) ..++.+|.+.|+-+|+.+.++|..||++.+.. +-.....-++|+.-... +.+++...|+..+ T Consensus 3 ~~lr~~i~~~Fkl~G~~Lr~eA~~yl~~~l~~~~~~er~~~l~kii~~v~-kQ~Lss~~Iek~~ 65 (72) T pfam12213 3 AALRRRVVSAFKLHGFSLRSEASKYLAEVLLSLGEPEREDWLEKIIEAVE-KQPLSSSMIERSV 65 (72) T ss_pred HHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHH T ss_conf 88999999887241030438899999998467998999999999999996-5888710513999 No 90 >smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold. Probab=87.81 E-value=2 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=48.8 Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 889887543025-66756799999620012355689999997510344434888887753 Q gi|254780804|r 152 DLIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352) Q Consensus 152 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352) .-|+..+...|+ +++++++..|++-+..-...+.||--|..- .+.+.++|.+||+..+ T Consensus 6 esik~iAes~Gi~~l~de~a~~La~dveyRlkei~q~A~Kfm~-hskR~~Lt~~DI~~AL 64 (65) T smart00803 6 ETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMR-HSKRTTLTTSDIDSAL 64 (65) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHH T ss_conf 8899999985988889999999999999999999999999999-7576757699999874 No 91 >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Probab=85.68 E-value=1.9 Score=22.00 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=52.5 Q ss_pred HHHCCCCCCCCH---HHHHHHHHCCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 751034443488---8887753101221114678------8876410236999999985311000145899999999999 Q gi|254780804|r 192 SSYCLEDILITE---QHVKDIICDTHVLYIEEII------NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 (352) Q Consensus 192 ~ly~~~~~~It~---~dI~~~v~~~~~~~if~L~------dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~ 262 (352) +++.+.-.+|+. ++|+..|....+..--+++ |-+-.-| .+++..+++.+.....|+.|+++=. -+. T Consensus 258 sl~~~~~~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLD-IE~FsFlnrAlEse~aPIii~AtNR----G~~ 332 (450) T COG1224 258 SLFSGGTGEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLD-IECFSFLNRALESELAPIIILATNR----GMT 332 (450) T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEECHHHHH-HHHHHHHHHHHHCCCCCEEEEECCC----CEE T ss_conf 56527766578899999999999998549578613428973213455-7899999987631467579997177----500 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHH--HHHHHHHHCCCHHHHHHHHHH Q ss_conf 99998302568989999860899997689--999999864998999999999 Q gi|254780804|r 263 KIHIIKECSNISFEKIIQKTEKNIIPMKR--NILQESLRIWNKNLVRETLHK 312 (352) Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~~~p~~~~~k--~~~~~q~~~~s~~~l~~~l~~ 312 (352) . ..|.+. ..|+--|.+. ..+.-..+.|+.++++.++.+ T Consensus 333 k------iRGTd~------~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450) T COG1224 333 K------IRGTDI------ESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450) T ss_pred E------ECCCCC------CCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHH T ss_conf 1------216677------688889876662256774477988999999997 No 92 >TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. . Probab=85.37 E-value=2.1 Score=21.71 Aligned_cols=178 Identities=15% Similarity=0.151 Sum_probs=100.9 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCC----CCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC---------------- Q ss_conf 999569965899999999997335666----773077620889641899999987178888882---------------- Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINSTSLFSKK---------------- 83 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~----~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~---------------- 83 (352) +++||+.-=-+.-+++...+.+..... ++-..+.+|++.+.+|..=+.| ||-|.- T Consensus 89 VIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RFDERGIAD-----PLIGSVHDPIYQGAGplG~AGI 163 (532) T TIGR02902 89 VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARFDERGIAD-----PLIGSVHDPIYQGAGPLGVAGI 163 (532) T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCC T ss_conf 89878869617899999999865087537898866898505103602146666-----5677615853337654578855 Q ss_pred ---E----------EEEEECCCC-----HHHHHHHHHHHHHCCCCCEEEEEEEC-----CCCCCHHHHHHHHH------- Q ss_conf ---3----------999847741-----04578988988510565607999852-----65431135667654------- Q gi|254780804|r 84 ---K----------IILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSN-----EIKKNNTLRKIAEK------- 133 (352) Q Consensus 84 ---k----------lIii~~~~~-----~k~~~~~l~~~~~~~~~~~~li~~a~-----~l~k~~kl~k~~e~------- 133 (352) | ++.|+..+. ..|.++.|++ --+++.|. +-.-.+-++..|++ T Consensus 164 PQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLED--------RKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFR 235 (532) T TIGR02902 164 PQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLED--------RKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFR 235 (532) T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHC--------CCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEE T ss_conf 75877763202586551212466582435314113302--------2200001235877786542789972067873401 Q ss_pred ----------------HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H Q ss_conf ----------------311210146644200135889887543025667567999996200123556899999975---1 Q gi|254780804|r 134 ----------------FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS---Y 194 (352) Q Consensus 134 ----------------~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l---y 194 (352) -..|+.|=|.++...+++...++.+.+-|++|+++|++.+..+.. +-+..-|=++ |++ . T Consensus 236 LiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~AaeKIg~~l~~~Al~~I~~Ya~-nGREAvN~~Q-LAaG~a~ 313 (532) T TIGR02902 236 LIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNAAEKIGLNLEKEALDLIAKYAS-NGREAVNLVQ-LAAGIAL 313 (532) T ss_pred CCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCHHHHHHH-HHHHHEE T ss_conf 2133369877678346505226771688878999998765653046547547999998740-5406778999-9731401 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCC Q ss_conf 03444348888877531012211 Q gi|254780804|r 195 CLEDILITEQHVKDIICDTHVLY 217 (352) Q Consensus 195 ~~~~~~It~~dI~~~v~~~~~~~ 217 (352) .-+++.|+.+||+=++. +..++ T Consensus 314 ~E~Rk~I~~~DieWV~~-~G~y~ 335 (532) T TIGR02902 314 GENRKRILAEDIEWVIE-SGNYH 335 (532) T ss_pred CCCCCEECHHHHHHHHH-HCCCC T ss_conf 28876120546445553-04787 No 93 >PRK10365 transcriptional regulatory protein ZraR; Provisional Probab=83.32 E-value=3.2 Score=20.46 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=91.6 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH-------------CCCCC--CCCE Q ss_conf 38479995699658999999999973356667730776208896418999999871-------------78888--8823 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-------------STSLF--SKKK 84 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~-------------t~slF--~~~k 84 (352) ++.=+||+||.---++..++.| .......+.+|-.+ ++..+ ..+.+-+++. ...+| ++.- T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~I-H~~S~r~~~pfv~v--nC~~l--~~~l~eseLFG~~~gaftga~~~~~g~~~~A~gG 235 (441) T PRK10365 161 SEATVLIHGDSGTGKELVARAI-HASSARSEKPLVTL--NCAAL--NESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441) T ss_pred CCCCEEEECCCCHHHHHHHHHH-HHCCCCCCCCCEEE--ECCCC--CHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCC T ss_conf 8994899899981099999999-96578778980798--78989--8455589861775568789653468987788998 Q ss_pred EEEEECCCCH-HHHHHHHHHHHHC----C-------CCCEEEEEEEC-CCCC---CHHHHHHHHHHHHHHHCCCCCCC-- Q ss_conf 9998477410-4578988988510----5-------65607999852-6543---11356676543112101466442-- Q gi|254780804|r 85 IILIENLSTE-KKVLDCLEEIIIK----N-------ICNHIIIIKSN-EIKK---NNTLRKIAEKFTSVLAISCYPDN-- 146 (352) Q Consensus 85 lIii~~~~~~-k~~~~~l~~~~~~----~-------~~~~~li~~a~-~l~k---~~kl~k~~e~~~~~~~v~~~~~~-- 146 (352) .+++++.+.. -.....|..+++. + +-++-+|..+. ++.. ...++.-+-..-+...+..+|+. T Consensus 236 TLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR 315 (441) T PRK10365 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQR 315 (441) T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCCC T ss_conf 25502315299999999998777521000588734413637998378899999881982589998860111378260006 Q ss_pred CHHHHHHHHHHH----HHCCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 001358898875----43025---6675679999962-00123556899999975103444348888877531 Q gi|254780804|r 147 KIHLMDLIEESL----LIGQK---SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352) Q Consensus 147 ~~~l~~~i~~~~----~~~g~---~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352) ..++..++..++ .+.|. .++++|++.|..+ -.||.+.+.|-++...+.+.+ ..|+.+++...+. T Consensus 316 ~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~iera~~~~~~-~~i~~~~l~~~~~ 387 (441) T PRK10365 316 REDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTG-EYISERELPLAIA 387 (441) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHC T ss_conf 20099999999999999849998888999999997099998999999999999995789-8688465754330 No 94 >pfam02969 TAF TATA box binding protein associated factor (TAF). TAF proteins adopt a histone-like fold. Probab=82.50 E-value=3.4 Score=20.25 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=47.8 Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 89887543025-66756799999620012355689999997510344434888887753 Q gi|254780804|r 153 LIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352) Q Consensus 153 ~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352) -|+..+...|+ +++++++..|++-+..-...+.||--|..-- +.+.+.|.+||+..+ T Consensus 8 sik~iAeS~Gi~~l~de~a~~La~dveyRl~eiiqeA~KFMrh-skR~~Ltt~Did~AL 65 (66) T pfam02969 8 SMKVIAESLGITNLSDEAAALLAEDVEYRLKEIVQDAAKFMRH-SKRQKLTVADIDSAL 65 (66) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH T ss_conf 8999999949888999999998999999999999999999998-675778799999874 No 95 >KOG1942 consensus Probab=82.45 E-value=2 Score=21.77 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=34.6 Q ss_pred CCCCCCCH---HHHHHHHHCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 34443488---888775310122111467888764102-----36999999985311000145899 Q gi|254780804|r 196 LEDILITE---QHVKDIICDTHVLYIEEIINATIQGKI-----YNAIMLADFFLASKMPSHALLHG 253 (352) Q Consensus 196 ~~~~~It~---~dI~~~v~~~~~~~if~L~dai~~~~~-----~~a~~~l~~l~~~g~~~~~il~~ 253 (352) +.+..||. .+|.++|....+..+-+|+--++.=|- .+.+..+++.+.....|+.|+++ T Consensus 267 PkKTEITdkLR~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDiEcFTyL~kalES~iaPivifAs 332 (456) T KOG1942 267 PKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFIDEVHMLDIECFTYLHKALESPIAPIVIFAS 332 (456) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 752246799999999999998862526536762686301324269999999986277875699962 No 96 >CHL00195 ycf46 Ycf46; Provisional Probab=81.01 E-value=3.9 Score=19.91 Aligned_cols=188 Identities=13% Similarity=0.067 Sum_probs=107.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE---H------H--HHHCCHHHHHHHHHCC Q ss_conf 875321001013847999569965899999999997335666773077620---8------8--9641899999987178 Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLN---A------L--EIQKNISTFWNEINST 77 (352) Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~---~------~--e~~~d~~~l~~~~~t~ 77 (352) |.+.+..-+...+++..+--.|+-.....+....+..... .+...+ | . .-..|+...++.++.. T Consensus 3 f~~dL~~lIrAr~PlI~I~T~EE~R~~~ll~~~~~~~~~~-----~~~~W~~t~Gl~~~~~~~~~~~~~P~~aL~~I~~~ 77 (491) T CHL00195 3 FTDELKLLLKARYPIIYINTIEEERVEYIIRKAIKTSLNR-----SIYSWDFVDGYTNNPNDNGYAKRNPLQALEFIERL 77 (491) T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 6999999998499989991688999999999999862589-----51899815784169986566779989999999861 Q ss_pred CCCCCCEEEEEECCCC---HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 8888823999847741---04578988988510-5656079998526543113566765431121014664420013588 Q gi|254780804|r 78 SLFSKKKIILIENLST---EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352) Q Consensus 78 slF~~~klIii~~~~~---~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352) + ....-+++++|... .-.+...|.++... ......+|+.++.+.-..-+.+ .+..+.+.-++..++... T Consensus 78 ~-~~~~~lfvLkDfh~fl~d~~i~R~Lrdla~~~~~~~~tlIlls~~~~lP~eL~~------~~~~l~~~LP~~~Ei~~~ 150 (491) T CHL00195 78 T-SETPTLFLLKDFNLFLNDISISRKLRNLSRILKLQSKTIIIIASELNIPKELKD------LITVLDFPLPNESEINKE 150 (491) T ss_pred C-CCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH------CEEEEECCCCCHHHHHHH T ss_conf 6-889839999368624328799999999999996479859999479989978872------257980489499999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 9887543025667567999996200-123556899999975103444348888877531 Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352) Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g-~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352) +.......+..++++..+.|+..+. -....+.+.+.+... .++.|+.+||..+.. T Consensus 151 l~~~~~~~~~~~~~~~~~~l~~a~~GLt~~e~~~~~~~ai~---~~g~i~~~~i~~i~~ 206 (491) T CHL00195 151 LKRLINSLNIPIDSELLENLTRACQGLSLERIRRVLAKIIA---TYKTIDEESIQIILE 206 (491) T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHH T ss_conf 99999852888998999999999669999999999999998---559988332899999 No 97 >PRK10923 glnG nitrogen regulation protein NR(I); Provisional Probab=80.49 E-value=4 Score=19.79 Aligned_cols=254 Identities=11% Similarity=0.049 Sum_probs=118.1 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH---CCCCCCC------------CE Q ss_conf 38479995699658999999999973356667730776208896418999999871---7888888------------23 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN---STSLFSK------------KK 84 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~---t~slF~~------------~k 84 (352) .+.=+||+||.---++..++.|- ......+.+|-.+...+ + ..+.+-+++. .-+|-|. .= T Consensus 160 ~~~pVLI~GE~GTGK~~~Ar~IH-~~S~r~~~pfi~vnC~~--~--~~~~~e~eLFG~~~gaf~ga~~~~~g~~e~a~~G 234 (469) T PRK10923 160 SSISVLINGESGTGKELVAHALH-RHSPRAKAPFIALNMAA--I--PKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469) T ss_pred CCCCEEEECCCCCCHHHHHHHHH-HCCCCCCCCCEEEECCC--C--CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC T ss_conf 89978998989826999999999-74887799957876788--9--9778999970876678788642458736643899 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCC-----------CCCEEEEEEEC-CCC---CCHHHHHHHHHHHHHHHCCCCCCC-- Q ss_conf 999847741-045789889885105-----------65607999852-654---311356676543112101466442-- Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKN-----------ICNHIIIIKSN-EIK---KNNTLRKIAEKFTSVLAISCYPDN-- 146 (352) Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~-----------~~~~~li~~a~-~l~---k~~kl~k~~e~~~~~~~v~~~~~~-- 146 (352) .+++++... +......|..+++.. +.++-+|..+. ++. ....++.-+-..-....+..+|+. T Consensus 235 TLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR 314 (469) T PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRER 314 (469) T ss_pred CEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHC T ss_conf 26566366489999999999985593785799851221437997078799998660817799998644240158465446 Q ss_pred CHHHHHHHHH----HHHHCCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH Q ss_conf 0013588988----7543025---6675679999962-001235568999999751034443488888775310122111 Q gi|254780804|r 147 KIHLMDLIEE----SLLIGQK---SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 (352) Q Consensus 147 ~~~l~~~i~~----~~~~~g~---~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~i 218 (352) ..++..++.. ..++.|. .++++|.+.|..+ -.||.+.+.|-++.+.+.+.+ ..|+.+|+...+......+. T Consensus 315 ~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ier~~~~~~~-~~i~~~dl~~~l~~~~~~~~ 393 (469) T PRK10923 315 REDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAG-QEVLIQDLPGELFESTVPDS 393 (469) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHHHCCCCCC T ss_conf 53499999999999999859997878999999997499998799999999999985799-82547757298863337776 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC Q ss_conf 46788876410236999-99998531100014589999999999999998302568989999860899 Q gi|254780804|r 219 EEIINATIQGKIYNAIM-LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 (352) Q Consensus 219 f~L~dai~~~~~~~a~~-~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p 285 (352) ......+.....+. ..+..+..+.+. ++..-...|.+-+....+... +-+..++++.++.+ T Consensus 394 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~Er~~I~~aL~~~-~gn~~~aA~~LGis 455 (469) T PRK10923 394 ---TSQMQPDSWATLLAQWADRALRSGHQN--LLSEAQPELERTLLTTALRHT-QGHKQEAARLLGWG 455 (469) T ss_pred ---CCCCCCCCHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHCCC T ss_conf ---545577403444211001111134201--589999999999999999990-99899999998989 No 98 >KOG0743 consensus Probab=77.53 E-value=4.9 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=14.0 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 99999975103444348888877531 Q gi|254780804|r 186 NELQKLSSYCLEDILITEQHVKDIIC 211 (352) Q Consensus 186 ~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352) .||.+|.+-..++..|-.|||+..+. T Consensus 275 ~dLr~LL~~t~~kSIivIEDIDcs~~ 300 (457) T KOG0743 275 SDLRHLLLATPNKSILLIEDIDCSFD 300 (457) T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCC T ss_conf 89999997289971899961243230 No 99 >TIGR01752 flav_long flavodoxin; InterPro: IPR010086 Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They function as electron transfer agents in a variety of microbial metabolic processes, including nitrogen fixation by nitrogenase , sulphite reduction , and light-dependent NADP+ reduction during photosynthesis . This entry describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in Escherichia coli .; GO: 0010181 FMN binding, 0006118 electron transport. Probab=75.84 E-value=3.6 Score=20.15 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=78.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHC-CCCCCCCEEE------------------EEEHHHHH--------CCHHHHHHHHH Q ss_conf 799956996589999999999733-5666773077------------------62088964--------18999999871 Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNIS-ITYHDPFSLV------------------VLNALEIQ--------KNISTFWNEIN 75 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~-~~~~~~~~~~------------------~~~~~e~~--------~d~~~l~~~~~ 75 (352) +=+|||.+.+-=+..++.|.+.++ .+..|.||+. ++...|+. .||+.++..+. T Consensus 2 iGifyGt~TG~T~~iAe~I~~~lG~~~~~d~~ni~~~~~~~~~~Y~~LIlGtPTw~~GeLqGleaGCes~dW~~~~~~L~ 81 (176) T TIGR01752 2 IGIFYGTDTGNTEGIAEKIAKELGKESDVDVFNIAKASLEDLEAYDILILGTPTWGVGELQGLEAGCESEDWEEFLSDLE 81 (176) T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 57898458760789999999981888662101323124686634870587447666776666544677421677765442 Q ss_pred CCCCCCCCEEEEEECCCCHH----HHHHHHHHHHHC-CCCCEEEEEEE----CCCCCCHHHHHHHHHHHH-HHHCC---C Q ss_conf 78888882399984774104----578988988510-56560799985----265431135667654311-21014---6 Q gi|254780804|r 76 STSLFSKKKIILIENLSTEK----KVLDCLEEIIIK-NICNHIIIIKS----NEIKKNNTLRKIAEKFTS-VLAIS---C 142 (352) Q Consensus 76 t~slF~~~klIii~~~~~~k----~~~~~l~~~~~~-~~~~~~li~~a----~~l~k~~kl~k~~e~~~~-~~~v~---~ 142 (352) ..+|=| |+|=+-..++.. ...+.+-.+.++ .+...-+|=.. ..++.++.+ .+..+. +.++. = T Consensus 82 ~~dl~G--K~VAlfGlGDQ~~Ysd~F~dgmg~L~d~~~~~Ga~~VG~wPtdGY~F~aSkA~---~~gd~FVGLAlDeDNQ 156 (176) T TIGR01752 82 ELDLKG--KTVALFGLGDQEGYSDTFCDGMGILYDKIKARGAKVVGFWPTDGYEFEASKAV---RDGDKFVGLALDEDNQ 156 (176) T ss_pred HCCCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCC---CCCCEEEEEEECCCCC T ss_conf 023588--76899725884611066787788999998515880775146995001566430---0687158872154377 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 64420013588988754 Q gi|254780804|r 143 YPDNKIHLMDLIEESLL 159 (352) Q Consensus 143 ~~~~~~~l~~~i~~~~~ 159 (352) +.+++..+.+||.+.-. T Consensus 157 ~dLT~~RI~~Wv~qIk~ 173 (176) T TIGR01752 157 PDLTEERIEKWVEQIKP 173 (176) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 42318999999999876 No 100 >pfam08542 Rep_fac_C Replication factor C. This family includes several subunits of DNA replication factor C. Probab=73.46 E-value=6.3 Score=18.52 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=46.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH Q ss_conf 2111467888764102369999999-853110001458999999999999999830256898999986089999768999 Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADF-FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 (352) Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~-l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~ 293 (352) ...+-++++++..|+..+|...+++ +...|.++.-|+..+.+.+..+ T Consensus 5 p~~I~~il~~~~~~~f~~a~~~i~~~~~~~G~s~~Dii~~l~~~i~~~-------------------------------- 52 (90) T pfam08542 5 PEDIKEILESCLNGDFEEAYKTLRELLIEKGYSAEDIITQLHRVLKTL-------------------------------- 52 (90) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------------------------------- T ss_conf 899999999998099999999999999985999999999999999873-------------------------------- Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 99998649989999999999999999532899989 Q gi|254780804|r 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 (352) Q Consensus 294 ~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~ 328 (352) .|+.....+++..|.++|..+-. |.++. T Consensus 53 ------~~~~~~k~~il~~la~~e~rL~~-G~~e~ 80 (90) T pfam08542 53 ------DIPESLKLELLKELGEIEYRLSD-GASEY 80 (90) T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHC-CCCHH T ss_conf ------89999999999999999999982-79779 No 101 >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Probab=73.16 E-value=6.4 Score=18.48 Aligned_cols=176 Identities=14% Similarity=0.185 Sum_probs=102.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHH Q ss_conf 1384799956996589999999999733566677307762088964189999998717888888239998477410-457 Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-KKV 97 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~ 97 (352) +-| .||||+.-.-+-..+..+.+.... ++..-.|.-+ .-+..+..-+. -..+.-+++|+...-. +.. T Consensus 51 ldH--~Ll~GPPGlGKTTLA~iiA~E~~~------~~~~tsGP~l-ek~~DL~~iLt---~l~~~dvLFIDEIHRl~~~v 118 (328) T PRK00080 51 LDH--VLLYGPPGLGKTTLANIIANEMGV------NIRITSGPAL-EKAGDLAALLT---NLEEGDVLFIDEIHRLSPVV 118 (328) T ss_pred CCC--EEEECCCCCCHHHHHHHHHHHHCC------CCEECCCCCC-CCHHHHHHHHH---HCCCCCEEEEHHHHHCCHHH T ss_conf 880--576588998899999999998688------8156245001-67478999996---08878767650653248889 Q ss_pred HHHHHHHHHCC------------------CCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 89889885105------------------65607999852654-311356676543112101466442001358898875 Q gi|254780804|r 98 LDCLEEIIIKN------------------ICNHIIIIKSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 (352) Q Consensus 98 ~~~l~~~~~~~------------------~~~~~li~~a~~l~-k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~ 158 (352) .+.|-..+++- .+...||--..... -+++++.= -....-+.+|. ..++.+.|...+ T Consensus 119 EE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g~Ls~PLrdR---FGi~~~l~~Y~--~eeL~~Ii~rsa 193 (328) T PRK00080 119 EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDR---FGIVQRLEFYT--VEELEKIVKRSA 193 (328) T ss_pred HHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHH---CCCEEEECCCC--HHHHHHHHHHHH T ss_conf 9885798775234578647865324555899834740136766577678975---79336634589--999999999999 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH Q ss_conf 4302566756799999620012355689999997510--3444348888877531 Q gi|254780804|r 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352) Q Consensus 159 ~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352) +..|+.|+++++..++.++-+-.+...+=|...--|+ .+.+.|+.+.+...+. T Consensus 194 ~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~~~~~aL~ 248 (328) T PRK00080 194 RILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITREIADKALD 248 (328) T ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9839887899999999863898399999999999999983799659999999999 No 102 >pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear Probab=72.51 E-value=5.8 Score=18.77 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=65.7 Q ss_pred HHHHHCCCCCCCCHH---HHHHHHHCCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 997510344434888---887753101221114678887------64102369999999853110001458999999999 Q gi|254780804|r 190 KLSSYCLEDILITEQ---HVKDIICDTHVLYIEEIINAT------IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 (352) Q Consensus 190 KL~ly~~~~~~It~~---dI~~~v~~~~~~~if~L~dai------~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~ 260 (352) -++++.+++++||.+ +|++.|....+...-+++--+ -.-| .+++..|++.+.....|+.|+++=.. T Consensus 240 ~~slf~~~~~EIt~elR~eInk~V~~~i~eG~AElvpGVLFIDEvHMLD-iEcFsfLnralEs~laPivI~ATNRG---- 314 (395) T pfam06068 240 ILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLD-IECFSFLNRALESELAPIVILATNRG---- 314 (395) T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHCC-HHHHHHHHHHHCCCCCCEEEEEECCC---- T ss_conf 6764179876069999999999999998648679842746885000000-58998887765056787699984465---- Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 9999998302568989999860899997689--99999986499899999999999999 Q gi|254780804|r 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR--NILQESLRIWNKNLVRETLHKIDHRI 317 (352) Q Consensus 261 L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k--~~~~~q~~~~s~~~l~~~l~~L~~~d 317 (352) +.. ..|.+. ..|+-.|.+. ..+.-...-|+.+++++++..=.+.| T Consensus 315 ~~~------IRGTd~------~sPHGiP~DlLDRllII~T~py~~~ei~~Ii~iRa~~E 361 (395) T pfam06068 315 ICT------IRGTDI------ISPHGIPLDLLDRLLIITTEPYTREEIKQILEIRAQEE 361 (395) T ss_pred CEE------ECCCCC------CCCCCCCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 203------525677------58889987777302588568899899999999877760 No 103 >KOG1968 consensus Probab=70.94 E-value=7.2 Score=18.15 Aligned_cols=188 Identities=14% Similarity=0.089 Sum_probs=96.9 Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCC---HHHHHHHHHCCCCCCCC------------E-EEEE Q ss_conf 995699658999999999973356667730776208896418---99999987178888882------------3-9998 Q gi|254780804|r 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN---ISTFWNEINSTSLFSKK------------K-IILI 88 (352) Q Consensus 25 Li~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d---~~~l~~~~~t~slF~~~------------k-lIii 88 (352) ++.|+----..-++....+.++ |.+..++..+.... .+.+.+...+.++++.+ . +|++ T Consensus 361 l~~G~pGigKT~~~h~~~k~~g------~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~ 434 (871) T KOG1968 361 LLSGPPGIGKTTAAHKAAKELG------FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILM 434 (871) T ss_pred HHCCCCCCCCHHHHHHHHHHCC------CCEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEE T ss_conf 7317887772056766301206------5401047543344227776640244664000111111330004666069997 Q ss_pred ECCCC----HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 47741----04578988988510565607999852654311356676543112101466442001358898875430256 Q gi|254780804|r 89 ENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 (352) Q Consensus 89 ~~~~~----~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 164 (352) .+... .......+..++.+..--+++++.--++.+...+ .. .+..+.|..++...+...|...+...++. T Consensus 435 devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr~~p~sr~~----~~--~~~~l~f~kP~~~~i~~ri~si~~se~~k 508 (871) T KOG1968 435 DEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDRNLPKSRAL----SR--ACSDLRFSKPSSELIRSRIMSICKSEGIK 508 (871) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH----HH--HCCEEEECCCCHHHHHHHHHHHHCCCCEE T ss_conf 4255442000136999999998635776887337777665202----23--20023404885777776665330246424 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---CCCCCCHHHHHHHHHH Q ss_conf 67567999996200123556899999975103444348888877531---0122111467888764 Q gi|254780804|r 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC---DTHVLYIEEIINATIQ 227 (352) Q Consensus 165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~---~~~~~~if~L~dai~~ 227 (352) |+++.++.++...|+|++...+-+.=.++-. ......+....+. .......|+...-++. T Consensus 509 i~~~~l~~~s~~~~~DiR~~i~~lq~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~ 571 (871) T KOG1968 509 ISDDVLEEISKLSGGDIRQIIMQLQFWSLSK---PAELPKKKGTPIKTSKKNITVKDFDAAEGLLD 571 (871) T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC---HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 1727889998750647999998776442046---65421235763235344564330477750123 No 104 >CHL00181 cbbX CbbX; Provisional Probab=69.49 E-value=7.7 Score=17.95 Aligned_cols=159 Identities=11% Similarity=0.113 Sum_probs=86.9 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEHHHHHCC--------HHHHHHHHHCCCCCCCCEEEEEECCC-- Q ss_conf 99956996589999999999733566-67730776208896418--------99999987178888882399984774-- Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITY-HDPFSLVVLNALEIQKN--------ISTFWNEINSTSLFSKKKIILIENLS-- 92 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~-~~~~~~~~~~~~e~~~d--------~~~l~~~~~t~slF~~~klIii~~~~-- 92 (352) .+|.|+.---+-..++.+.+.+..-+ -..-.++..+..++... ...+++. .+ ..+++|+.+- T Consensus 62 ~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~yvG~Ta~kt~~~i~~----a~---GGVLfIDEAY~L 134 (287) T CHL00181 62 MSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKEVLKK----AM---GGVLFIDEAYYL 134 (287) T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHH----CC---CCEEEEECHHHH T ss_conf 88878998679999999999999869955895899535884163535216999999996----45---987998244653 Q ss_pred ---C-----HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH-----HHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf ---1-----045789889885105656079998526543113566765431-----121014664420013588988754 Q gi|254780804|r 93 ---T-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-----SVLAISCYPDNKIHLMDLIEESLL 159 (352) Q Consensus 93 ---~-----~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~-----~~~~v~~~~~~~~~l~~~i~~~~~ 159 (352) + .+...+.|...++++.++.++ +.++.-+.. ..+++... ....+.|..-+..++.......+. T Consensus 135 ~~~~~~~dfg~eaidtLl~~me~~~~~lvv-I~AGY~~eM---~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~ 210 (287) T CHL00181 135 YKPDNERDYGAEAIEILLQVMENQRDDLVV-IFAGYKDRM---DKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLE 210 (287) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCHHHH---HHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 578899983799999999998707998899-984678999---9999859047876887237798599999999999999 Q ss_pred HCCCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHH Q ss_conf 3025667567999996200--------123556899999975 Q gi|254780804|r 160 IGQKSISKEAKQILLANLG--------GDRIASRNELQKLSS 193 (352) Q Consensus 160 ~~g~~i~~~a~~~L~~~~g--------~d~~~l~~EleKL~l 193 (352) +.+..++++|...+.+.+. +|-+.+.|-+|+... T Consensus 211 ~~~~~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~ 252 (287) T CHL00181 211 EQQYQLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARM 252 (287) T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 869825879999999999985089998748999999999999 No 105 >TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation. Probab=69.45 E-value=6.2 Score=18.58 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=52.9 Q ss_pred HHHCCCCCCCC--HHHHHHHHHHHHH------CC-CCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH Q ss_conf 21014664420--0135889887543------02-5667567999996-2001235568999999751034443488888 Q gi|254780804|r 137 VLAISCYPDNK--IHLMDLIEESLLI------GQ-KSISKEAKQILLA-NLGGDRIASRNELQKLSSYCLEDILITEQHV 206 (352) Q Consensus 137 ~~~v~~~~~~~--~~l~~~i~~~~~~------~g-~~i~~~a~~~L~~-~~g~d~~~l~~EleKL~ly~~~~~~It~~dI 206 (352) ++-+..+|+.+ .|++...+.++.+ .. +.+++.|++.|.. +-.||-+.|.|=|+.=+..+. ++.||.+|+ T Consensus 377 VvPl~lPPLRER~~DIP~LA~~fL~kf~~en~R~mL~~~~~Ai~~Lm~c~wPGNVRELENC~eRtAtLs~-~~~It~~df 455 (574) T TIGR01817 377 VVPLILPPLRERREDIPLLAEAFLEKFNRENGRPMLTLSPSAIRVLMSCKWPGNVRELENCVERTATLSR-SGTITRSDF 455 (574) T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCC-CCCCCCCEE T ss_conf 2234078777873116899999999876651872032267899897517899974004437877875416-885164236 Q ss_pred HHHHH Q ss_conf 77531 Q gi|254780804|r 207 KDIIC 211 (352) Q Consensus 207 ~~~v~ 211 (352) .=--. T Consensus 456 ~c~~~ 460 (574) T TIGR01817 456 SCQSG 460 (574) T ss_pred EECCC T ss_conf 64278 No 106 >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. Probab=68.56 E-value=8 Score=17.82 Aligned_cols=53 Identities=11% Similarity=-0.013 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHH----HHCCCCCCCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 356676543112----101466442001358898----87543025667567999996200 Q gi|254780804|r 126 TLRKIAEKFTSV----LAISCYPDNKIHLMDLIE----ESLLIGQKSISKEAKQILLANLG 178 (352) Q Consensus 126 kl~k~~e~~~~~----~~v~~~~~~~~~l~~~i~----~~~~~~g~~i~~~a~~~L~~~~g 178 (352) -.+|++|+..-. ..|...+++..+...+++ .+-..+|+.|+++|+..-+..+. T Consensus 313 EYrk~iEkD~AL~RRFq~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~ 373 (852) T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSH 373 (852) T ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHC T ss_conf 9998832268899737712047998689999999769999762792673999999999713 No 107 >pfam02607 B12-binding_2 B12 binding domain. This B12 binding domain is found in methionine synthase EC:2.1.1.13, and other shorter proteins that bind to B12. This domain is always found to the N-terminus of pfam02310. The structure of this domain is known, it is a 4 helix bundle. Many of the conserved residues in this domain are involved in B12 binding, such as those in the MXXVG motif. Probab=65.96 E-value=7.3 Score=18.11 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 146788876410236999999985311000145899 Q gi|254780804|r 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 (352) Q Consensus 218 if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~ 253 (352) ..++.+++..|+...+....+..+..|.+|..|+.. T Consensus 4 ~~~l~~av~~g~~~~v~~~v~~aL~~g~~p~~ii~~ 39 (78) T pfam02607 4 LEKLAEAVLDGDEEGVEELVEEALAEGVDPLEIINE 39 (78) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 999999998288877999999999839987999998 No 108 >PRK08485 DNA polymerase III subunit delta'; Validated Probab=58.26 E-value=12 Score=16.59 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=26.8 Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECC Q ss_conf 8823999847741-045789889885105656079998526 Q gi|254780804|r 81 SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNE 120 (352) Q Consensus 81 ~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~ 120 (352) ++.|+|++- +.. ......+|...++.||.++++++.++. T Consensus 53 ~~~k~ii~~-A~~~n~~a~NaLLK~lEEPp~~~~fili~~~ 92 (204) T PRK08485 53 SEEKIIVIA-APSYGIEAQNALLKILEEPPKNIKFIIVAKS 92 (204) T ss_pred CCCEEEEEE-HHHHCHHHHHHHHHHHCCCCCCCEEEEEECC T ss_conf 686299971-5752699999999874179988079998688 No 109 >PRK12359 flavodoxin FldB; Provisional Probab=58.06 E-value=12 Score=16.57 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=46.7 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEE------------------EEEHHHHHCCHHHHHHHHHCCCCCCCCE Q ss_conf 7999569965899999999997335666773077------------------6208896418999999871788888823 Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLV------------------VLNALEIQKNISTFWNEINSTSLFSKKK 84 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~------------------~~~~~e~~~d~~~l~~~~~t~slF~~~k 84 (352) +=+|||.+.+--+..+++|.+.+..+.-+-+++. ..+..|+..||+.+++++..+. |++|+ T Consensus 3 IgifYGS~TGnTe~vA~~I~~~lg~~~vd~~~v~~~~~~~~~~yd~lIlG~pTW~~GeLq~dW~~~~~~l~~~D-~sGK~ 81 (169) T PRK12359 3 IGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLN-LEGKI 81 (169) T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEHHCCCHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CCCCE T ss_conf 99999799970999999999985614523132502998799629879997686677865767999998886388-78988 Q ss_pred EEEEE Q ss_conf 99984 Q gi|254780804|r 85 IILIE 89 (352) Q Consensus 85 lIii~ 89 (352) +-++= T Consensus 82 VAlFG 86 (169) T PRK12359 82 VALYG 86 (169) T ss_pred EEEEE T ss_conf 99984 No 110 >CHL00095 clpC Clp protease ATP binding subunit Probab=54.69 E-value=14 Score=16.21 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=62.4 Q ss_pred ECCCHHHHHHHHHHHHHHHCCC----CCCCCEEEEEEHHHHH----------CCHHHHHHHHHCCCCCCCCEEEEEECC- Q ss_conf 5699658999999999973356----6677307762088964----------189999998717888888239998477- Q gi|254780804|r 27 YGSDKGLIFELINQFKKNISIT----YHDPFSLVVLNALEIQ----------KNISTFWNEINSTSLFSKKKIILIENL- 91 (352) Q Consensus 27 ~G~d~~l~~~~~~~l~k~~~~~----~~~~~~~~~~~~~e~~----------~d~~~l~~~~~t~slF~~~klIii~~~- 91 (352) .|+.---+...++-+...+..+ .--...+..+|-..+. .-...+++++... +.-+++|++. T Consensus 206 vGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~ei~~~----~~iILFIDEiH 281 (823) T CHL00095 206 IGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDEIKKA----NNIILVIDEIH 281 (823) T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHC----CCEEEEECCHH T ss_conf 37999879999999999760889986875993688428877533422267999999999999857----98699973516 Q ss_pred -----CC---HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHHH---- Q ss_conf -----41---04578988988510565607999852654311356676543112----101466442001358898---- Q gi|254780804|r 92 -----ST---EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV----LAISCYPDNKIHLMDLIE---- 155 (352) Q Consensus 92 -----~~---~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~----~~v~~~~~~~~~l~~~i~---- 155 (352) +. .-+....|+..+..-. +=++-+..+ .-.+|++|+.... ..|...+++..+....++ T Consensus 282 tlvGaG~~~g~~DaaNlLKPaLarGe---l~~IGATT~---~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~ 355 (823) T CHL00095 282 TLIGAGAAEGAIDAANILKPALARGK---LQCIGATTL---EEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRD 355 (823) T ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEECCH---HHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 53288976664317887657864898---669970788---999998530588996268410289987999999999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHH Q ss_conf 8754302566756799999620 Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANL 177 (352) Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~ 177 (352) .+-.-+|+.|+++|+..-+..+ T Consensus 356 ~yE~~H~V~i~d~Ai~aav~LS 377 (823) T CHL00095 356 RYEKHHNLSISDKALEAAAKLS 377 (823) T ss_pred HHHHHCCCCCCHHHHHHHHHHH T ss_conf 9987508850478999999987 No 111 >KOG2549 consensus Probab=53.26 E-value=15 Score=16.06 Aligned_cols=14 Identities=0% Similarity=-0.261 Sum_probs=6.6 Q ss_pred HCCCCCCHHHHHHH Q ss_conf 10122111467888 Q gi|254780804|r 211 CDTHVLYIEEIINA 224 (352) Q Consensus 211 ~~~~~~~if~L~da 224 (352) ......+-|.|-|. T Consensus 304 ~~p~~dnhwaLRDf 317 (576) T KOG2549 304 LRPELDNHWALRDF 317 (576) T ss_pred CCCCCCCHHHHHHH T ss_conf 88654413889889 No 112 >TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741 This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis. Probab=52.44 E-value=8.5 Score=17.66 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 7888764102369999999853110001458 Q gi|254780804|r 221 IINATIQGKIYNAIMLADFFLASKMPSHALL 251 (352) Q Consensus 221 L~dai~~~~~~~a~~~l~~l~~~g~~~~~il 251 (352) +.+|+..++...+.+.+++.++.|.+|+-|+ T Consensus 2 ~~~AI~~~~~~~~~~~~~~A~~~G~~P~~lI 32 (201) T TIGR02370 2 LAEAIVEGEEDDVVELAQKALDAGIDPIELI 32 (201) T ss_pred CCCHHCCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 4101124456679999999998188958986 No 113 >TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species.. Probab=52.11 E-value=15 Score=15.94 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=56.8 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 4578988988510565607999852654311356676----543112101466442001358898875430256675679 Q gi|254780804|r 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 (352) Q Consensus 95 k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~----e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~ 170 (352) |...|.|..-.++...+.+||+ ||--+.-..+-..= ..-+....+|=| +..+|...+..++++..+.++++|. T Consensus 127 KEAIDtLVK~mEd~~~~lvlIL-AGY~~EM~yFL~~NPGL~SRFPi~i~FPdY--~~eeL~~Ia~~m~~~ReY~Lt~~A~ 203 (261) T TIGR02881 127 KEAIDTLVKAMEDQRNELVLIL-AGYSDEMDYFLSLNPGLRSRFPISIDFPDY--TVEELMEIAERMVKEREYKLTEEAK 203 (261) T ss_pred CHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHCCCCCCCCCCCEEECCCC--CHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 2088899998761569868997-087689999862077977766505418899--8889999999998646422578899 Q ss_pred HHHHHHHHH----------HHHHHHHHHHH Q ss_conf 999962001----------23556899999 Q gi|254780804|r 171 QILLANLGG----------DRIASRNELQK 190 (352) Q Consensus 171 ~~L~~~~g~----------d~~~l~~EleK 190 (352) ..|-+.+-. |-+.+.|=+|| T Consensus 204 ~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~ 233 (261) T TIGR02881 204 WKLREHLAKVDQLSSREFSNARYVRNIIEK 233 (261) T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 999999741244421005762012428899 No 114 >PRK09267 flavodoxin FldA; Validated Probab=51.21 E-value=16 Score=15.85 Aligned_cols=67 Identities=25% Similarity=0.384 Sum_probs=45.6 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEE------------------EEEHHHHHCCHHHHHHHHHCCCCCCCC Q ss_conf 47999569965899999999997335666773077------------------620889641899999987178888882 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLV------------------VLNALEIQKNISTFWNEINSTSLFSKK 83 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~------------------~~~~~e~~~d~~~l~~~~~t~slF~~~ 83 (352) .+=+|||...+--+..++.|.+.+.....+.+++. .+...|+..||+.+++++..+. |+++ T Consensus 3 kIgIfYGS~TGnTE~vA~~I~~~lg~~~~dv~di~~~~~~d~~~yd~lIlG~~Twg~GeLq~dW~df~~~l~~~D-lsGK 81 (169) T PRK09267 3 KIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQTDWDDFLPELEEID-FSGK 81 (169) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC-CCCC T ss_conf 289999799985899999999984778757988420998899629879997576788867156999999997378-7998 Q ss_pred EEEEEE Q ss_conf 399984 Q gi|254780804|r 84 KIILIE 89 (352) Q Consensus 84 klIii~ 89 (352) ++=++= T Consensus 82 ~vAlFG 87 (169) T PRK09267 82 KVALFG 87 (169) T ss_pred EEEEEE T ss_conf 899984 No 115 >TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination. Probab=50.45 E-value=16 Score=15.78 Aligned_cols=186 Identities=13% Similarity=0.174 Sum_probs=110.2 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHH-H Q ss_conf 138479995699658999999999973356667730776208896418999999871788888823999847741045-7 Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKK-V 97 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~k~-~ 97 (352) +-| .|||||.-.-+-..+.-+.+..+. ++..-.|--+.. +..|..-+ +-..++-|..|+...-... + T Consensus 30 LDH--~LL~GPPGLGKTTLA~IiA~Emg~------~l~iTsGP~L~k-PgDlaaiL---t~L~~gDVLFIDEIHRL~p~~ 97 (305) T TIGR00635 30 LDH--LLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPALEK-PGDLAAIL---TNLEEGDVLFIDEIHRLSPAI 97 (305) T ss_pred CCC--EEEECCCCCCHHHHHHHHHHHHCC------CCEEEECCCCCC-HHHHHHHH---HHCCCCCEEECCHHHHCCHHH T ss_conf 341--663175687467899999998389------326740675547-57899999---705689631012565048334 Q ss_pred HHHHHHHHHC--------CCCCEEEE-EE------------ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 8988988510--------56560799-98------------526543113566765431121014664420013588988 Q gi|254780804|r 98 LDCLEEIIIK--------NICNHIII-IK------------SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156 (352) Q Consensus 98 ~~~l~~~~~~--------~~~~~~li-~~------------a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~ 156 (352) -+.|-..++. .-++.-.| +. +|.+ .++|+. .-..+.-+.+|. ..++...|.. T Consensus 98 EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~l--t~PLrd---RFG~~~rl~fY~--~~EL~~Iv~R 170 (305) T TIGR00635 98 EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGML--TSPLRD---RFGIILRLEFYT--PEELAEIVSR 170 (305) T ss_pred HHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCC--CCCHHH---HHHHHHHCCCCC--HHHHHHHHHH T ss_conf 531053001217877871289852576068694420000347741--031334---544745402689--8789999875 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCC-CCCCHHHHHH Q ss_conf 754302566756799999620012355689999997510--344434888887753101-2211146788 Q gi|254780804|r 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDT-HVLYIEEIIN 223 (352) Q Consensus 157 ~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~-~~~~if~L~d 223 (352) .+...++.|+++++..++.++-+=.+....=+-..-=|+ -+...||.+-+.+.+..- .+..-+|-.| T Consensus 171 ~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~L~iD~~GLd~~D 240 (305) T TIGR00635 171 SAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEMLDIDELGLDEID 240 (305) T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 3344143007789999987547863788877676644888726787388999999886253330057998 No 116 >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] Probab=49.33 E-value=17 Score=15.66 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=91.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHH-HH--CCCCC-CCCE---------- Q ss_conf 1384799956996589999999999733566677307762088964189999998-71--78888-8823---------- Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-IN--STSLF-SKKK---------- 84 (352) Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~-~~--t~slF-~~~k---------- 84 (352) -++.=+|++||----++-.++.| .+..+..+-+|- ...+.- =|+.|+++ +. ...-| |..+ T Consensus 266 ~tdstVLi~GESGTGKElfA~~I-H~~S~R~~~PFI--aiNCaA---iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A 339 (560) T COG3829 266 KTDSTVLILGESGTGKELFARAI-HNLSPRANGPFI--AINCAA---IPETLLESELFGYEKGAFTGASKGGKPGLFELA 339 (560) T ss_pred CCCCCEEEECCCCCCHHHHHHHH-HHCCCCCCCCEE--EEECCC---CCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC T ss_conf 89982899537886689999998-744843479807--876433---888888888727677642464457997605441 Q ss_pred ---EEEEECCCC-HHHHHHHHHHHHHC----------C-CCCEEEEEEECCCCCC-----HHHHHHHHHHHHHHHCCCCC Q ss_conf ---999847741-04578988988510----------5-6560799985265431-----13566765431121014664 Q gi|254780804|r 85 ---IILIENLST-EKKVLDCLEEIIIK----------N-ICNHIIIIKSNEIKKN-----NTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 85 ---lIii~~~~~-~k~~~~~l~~~~~~----------~-~~~~~li~~a~~l~k~-----~kl~k~~e~~~~~~~v~~~~ 144 (352) -++++..++ +......|...++. + +-|+- |+.|.+-... -++|.-+=.--++..+...| T Consensus 340 ~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR-IIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPP 418 (560) T COG3829 340 NGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR-IIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPP 418 (560) T ss_pred CCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEE-EEECCCCCHHHHHHCCCCHHHHEEEECEEEECCCC T ss_conf 69837712320399899999999875353785378875356789-99425758999986396165530030401114777 Q ss_pred C--CCHHHHHHHHHHHHH----CCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 4--200135889887543----025---6675679999962-0012355689999997510344434888887 Q gi|254780804|r 145 D--NKIHLMDLIEESLLI----GQK---SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352) Q Consensus 145 ~--~~~~l~~~i~~~~~~----~g~---~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352) + ...++...+..++.+ +|. .++++|.+.|..+ -.||.+.+.|-+|.+.++..+...|+.++.- T Consensus 419 LReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560) T COG3829 419 LRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCC T ss_conf 2338201899999999999987288766689999999986899960999999999998106886622252262 No 117 >PRK03992 proteasome-activating nucleotidase; Provisional Probab=48.14 E-value=18 Score=15.54 Aligned_cols=21 Identities=10% Similarity=-0.103 Sum_probs=12.5 Q ss_pred HHHHHHHHCCCHHHHHHHHHH Q ss_conf 999999864998999999999 Q gi|254780804|r 292 NILQESLRIWNKNLVRETLHK 312 (352) Q Consensus 292 ~~~~~q~~~~s~~~l~~~l~~ 312 (352) ..+.+....||...++.+... T Consensus 328 ~~lA~~T~G~SGADI~~lc~E 348 (390) T PRK03992 328 EELAELTEGASGADLKAICTE 348 (390) T ss_pred HHHHHHCCCCCHHHHHHHHHH T ss_conf 999976879989999999999 No 118 >PRK10865 protein disaggregation chaperone; Provisional Probab=47.51 E-value=18 Score=15.48 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=38.2 Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHHH----HHHHHCCCCCCHH Q ss_conf 78988988510565607999852654311356676543112----101466442001358898----8754302566756 Q gi|254780804|r 97 VLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV----LAISCYPDNKIHLMDLIE----ESLLIGQKSISKE 168 (352) Q Consensus 97 ~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~----~~v~~~~~~~~~l~~~i~----~~~~~~g~~i~~~ 168 (352) ....|+.++..-. +=++-+..+ .-.+|++|+..-. ..|..-+++..+...+++ .+-..+|+.|+++ T Consensus 295 aaNlLKPaLaRGe---lr~IGATT~---~EYrk~iEkD~AL~RRFq~V~V~EPs~e~ti~ILrgl~~~yE~hH~V~itde 368 (857) T PRK10865 295 AGNMLKPALARGE---LHCVGATTL---DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDP 368 (857) T ss_pred HHHHHHHHHHCCC---CEEEEECCH---HHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHH T ss_conf 7888678873798---549994589---9999871345889985371006899879999999988889987379158799 Q ss_pred HHHHHHHHH Q ss_conf 799999620 Q gi|254780804|r 169 AKQILLANL 177 (352) Q Consensus 169 a~~~L~~~~ 177 (352) |+..-+..+ T Consensus 369 Al~aAV~LS 377 (857) T PRK10865 369 AIVAAATLS 377 (857) T ss_pred HHHHHHHHH T ss_conf 999999986 No 119 >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Probab=45.43 E-value=19 Score=15.27 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=96.5 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH------CCCCC--CCCEEEEEE Q ss_conf 0138479995699658999999999973356667730776208896418999999871------78888--882399984 Q gi|254780804|r 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN------STSLF--SKKKIILIE 89 (352) Q Consensus 18 ~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~------t~slF--~~~klIii~ 89 (352) ...+.=.||+||----++..++.+- ..+...+.+|-.....+ + ..+.+-+++. ..++| ++.--++++ T Consensus 224 A~~d~pVLI~GEsGTGKellAraIH-~~S~R~~~pFv~vnC~a--l--p~~l~eseLFG~a~~~~~G~fe~A~gGTLfLd 298 (513) T PRK10820 224 AMLSAPLLITGDTGTGKDLFAYACH-LASPRAKKPYLALNCAS--I--PEDAVESELFGHAPEGKKGFFEQANGGSVLLD 298 (513) T ss_pred HCCCCCEEEECCCCCCHHHHHHHHH-HCCCCCCCCCEEEECCC--C--CHHHHHHHHCCCCCCCCCCCEEECCCCEEEEE T ss_conf 5989988998989824999999999-66887899826888998--9--96789998638766688975578589889997 Q ss_pred CCCC-HHHHHHHHHHHHHC----C-------CCCEEEEEEEC-CCCC---CHHHHHHHHHHHHHHHCCCCCCC--CHHHH Q ss_conf 7741-04578988988510----5-------65607999852-6543---11356676543112101466442--00135 Q gi|254780804|r 90 NLST-EKKVLDCLEEIIIK----N-------ICNHIIIIKSN-EIKK---NNTLRKIAEKFTSVLAISCYPDN--KIHLM 151 (352) Q Consensus 90 ~~~~-~k~~~~~l~~~~~~----~-------~~~~~li~~a~-~l~k---~~kl~k~~e~~~~~~~v~~~~~~--~~~l~ 151 (352) +.+. +-.....|..+++. + +-++-+|..+. ++.. ...++.-+-..-++..+..+|+. ..++. T Consensus 299 EI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~ 378 (513) T PRK10820 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIM 378 (513) T ss_pred CHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHH T ss_conf 83659999999999998689799659985356778999626530999987298508899986167255888344655699 Q ss_pred HH----HHHHHHHCCC---CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 88----9887543025---6675679999962-0012355689999997510344434888887 Q gi|254780804|r 152 DL----IEESLLIGQK---SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVK 207 (352) Q Consensus 152 ~~----i~~~~~~~g~---~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~ 207 (352) .. +..+..+.|. .++++|...|..+ -.||.+.+.|.++...+.+.+ ..|+.+|+. T Consensus 379 ~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~~~g-~~i~~~di~ 441 (513) T PRK10820 379 PLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEG-YELRPQDIL 441 (513) T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHCC T ss_conf 999999999999759998984799999997089997999999999999995799-853499828 No 120 >smart00427 H2B Histone H2B. Probab=44.46 E-value=20 Score=15.18 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=46.1 Q ss_pred HHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC Q ss_conf 89887543--02566756799999620012355689999997510344434888887753101 Q gi|254780804|r 153 LIEESLLI--GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352) Q Consensus 153 ~i~~~~~~--~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352) +|...+++ -+..|+..|++.+-..+..-...+..|--+|+-|. .+.+||..+|+..+--- T Consensus 6 Yi~kVLKqVhp~~giS~kam~imnsfv~diferIa~eA~~L~~~~-kr~TitsreIqtAvrLl 67 (89) T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYN-KKSTLSSREIQTAVRLI 67 (89) T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHH T ss_conf 999998500899985799999999999999999999999999975-99988399999999997 No 121 >pfam12002 MgsA_C MgsA AAA+ ATPase C terminal. The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA. Probab=44.15 E-value=20 Score=15.14 Aligned_cols=65 Identities=9% Similarity=-0.094 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999 Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352) Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352) .|...|+..+.+++..|++|..| +|+|+.+... +.+..++.... ......+++++.+.++-+ T Consensus 2 SD~dAAlyylarml~~GEDp~~I-------~RRl~~~AsE-DIGlAdP~al~----------~a~~a~~a~~~iG~PE~~ 63 (168) T pfam12002 2 SDPDAALYWLARMLEGGEDPLFI-------ARRLVIIASE-DIGLADPQALQ----------LAVAAAQAVERIGMPEGR 63 (168) T ss_pred CCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHH-HHCCCCHHHHH----------HHHHHHHHHHHHCCHHHH T ss_conf 88009999999999859988999-------9999999975-41265753999----------999999999985828799 Q ss_pred HHH Q ss_conf 999 Q gi|254780804|r 308 ETL 310 (352) Q Consensus 308 ~~l 310 (352) -.| T Consensus 64 i~L 66 (168) T pfam12002 64 IAL 66 (168) T ss_pred HHH T ss_conf 999 No 122 >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Probab=40.30 E-value=23 Score=14.76 Aligned_cols=172 Identities=12% Similarity=0.132 Sum_probs=94.7 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCC-CCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCC------------------ Q ss_conf 79995699658999999999973356-66773077620889641899999987178888882------------------ Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK------------------ 83 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~-~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~------------------ 83 (352) =.|++|+--.-++..++.+- ..... ...+ .+.+.+..+..++... + |||-+ T Consensus 103 ~vLi~GetGtGKel~A~~iH-~~s~r~~~~P--FI~~NCa~~~en~~~~--e-----LFG~~kGaftGa~~~k~Glfe~A 172 (403) T COG1221 103 PVLIIGETGTGKELFARLIH-ALSARRAEAP--FIAFNCAAYSENLQEA--E-----LFGHEKGAFTGAQGGKAGLFEQA 172 (403) T ss_pred CEEEECCCCCCHHHHHHHHH-HHHHCCCCCC--EEEEEHHHHCCCHHHH--H-----HHCCCCCEEECCCCCCCCHHEEC T ss_conf 47986688753889999999-8612135898--7997777737677777--7-----73200000025667867642052 Q ss_pred --EEEEEECCCC-HHHHHHHHHHHHHC----------CCCCEEEEEEECCCCCCHHHHH--HHHHHHHHHHCCCCCCCCH Q ss_conf --3999847741-04578988988510----------5656079998526543113566--7654311210146644200 Q gi|254780804|r 84 --KIILIENLST-EKKVLDCLEEIIIK----------NICNHIIIIKSNEIKKNNTLRK--IAEKFTSVLAISCYPDNKI 148 (352) Q Consensus 84 --klIii~~~~~-~k~~~~~l~~~~~~----------~~~~~~li~~a~~l~k~~kl~k--~~e~~~~~~~v~~~~~~~~ 148 (352) -.+.+++... .......|..+++. |.+..+.++.|......+.+.+ .+...-+...|...|+..+ T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER 252 (403) T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRER 252 (403) T ss_pred CCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHC T ss_conf 79777656365379858999999987186576688888677740451356687999874052556416754318972435 Q ss_pred --HHH----HHHHHHHHHCCCCC---CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf --135----88988754302566---75679999962-00123556899999975103444348888 Q gi|254780804|r 149 --HLM----DLIEESLLIGQKSI---SKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQH 205 (352) Q Consensus 149 --~l~----~~i~~~~~~~g~~i---~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~d 205 (352) ++. -++..++++.|..+ +++|...|..+ ..||.+.++|-++-.++.+... .++.++ T Consensus 253 ~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~-~~~~~~ 318 (403) T COG1221 253 KEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGE-GQDLED 318 (403) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCC T ss_conf 555999999999999997399988888999999984889983999999999999973545-678510 No 123 >cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy). Probab=39.50 E-value=24 Score=14.68 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=19.7 Q ss_pred CCCCCCEEEEEECC---CCHHHHHHHHHHHHHC-----CCCCEEEEEE Q ss_conf 88888239998477---4104578988988510-----5656079998 Q gi|254780804|r 78 SLFSKKKIILIENL---STEKKVLDCLEEIIIK-----NICNHIIIIK 117 (352) Q Consensus 78 slF~~~klIii~~~---~~~k~~~~~l~~~~~~-----~~~~~~li~~ 117 (352) -+|....+.+-.-. ...+...+.|+.++.. ++..++++-+ T Consensus 48 ~~f~~ge~flp~vl~sA~am~~~~~~L~p~l~~~~~~~~~~GkvvigT 95 (213) T cd02069 48 DLFGAGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLAT 95 (213) T ss_pred HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 985279783799999999999999999998764046788788599997 No 124 >pfam09968 DUF2202 Uncharacterized protein domain (DUF2202). This domain, found in various hypothetical archaeal proteins, has no known function. Probab=37.29 E-value=26 Score=14.46 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=48.6 Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 689999997510344434888887753101221114678887641023699999998531100014589999999 Q gi|254780804|r 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 (352) Q Consensus 184 l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f 258 (352) ...|+++|---.-.++..+..|-..+-....+.+|.||-.++..-+-......+..|.....+. ++++.|++ T Consensus 67 ~npelQ~LYn~L~~~G~~S~~dAL~VGa~IEelDI~DL~~~i~~t~n~di~~Vy~nL~~GS~NH---LraF~r~l 138 (162) T pfam09968 67 TNPDLQELYNQLVEKGSKSLEDALKVGATIEDLDIYDLEEAIAETDNQDIKFVYENLMKGSRNH---LRSFVRAL 138 (162) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHH T ss_conf 8877999999999973352899998382022256999999998508087999999999870888---99999999 No 125 >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Probab=37.12 E-value=26 Score=14.44 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHH----HHCCCCCCCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH Q ss_conf 356676543112----101466442001358898----8754302566756799999620 Q gi|254780804|r 126 TLRKIAEKFTSV----LAISCYPDNKIHLMDLIE----ESLLIGQKSISKEAKQILLANL 177 (352) Q Consensus 126 kl~k~~e~~~~~----~~v~~~~~~~~~l~~~i~----~~~~~~g~~i~~~a~~~L~~~~ 177 (352) -.+|++|+..-. ..|..-+++..+....++ .+-..+|+.|+++|+..-+..+ T Consensus 327 EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS 386 (852) T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852) T ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHH T ss_conf 998886426889962475527999879999999987999855479687089999999998 No 126 >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Probab=34.60 E-value=28 Score=14.18 Aligned_cols=171 Identities=13% Similarity=0.206 Sum_probs=95.7 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHH--- Q ss_conf 99956996589999999999733566677307762088964189999998717888888239998477410-45789--- Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLD--- 99 (352) Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~--- 99 (352) .||||+.-.-+-..+..+.+..+. |+..-.|.-+ .-+..+..-+ +-..+.-+++|+...-. ...-+ T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgv------n~k~tsGp~l-eK~gDlaaiL---t~Le~~DVLFIDEIHrl~~~vEE~LY 124 (332) T COG2255 55 VLLFGPPGLGKTTLAHIIANELGV------NLKITSGPAL-EKPGDLAAIL---TNLEEGDVLFIDEIHRLSPAVEEVLY 124 (332) T ss_pred EEEECCCCCCHHHHHHHHHHHHCC------CEEECCCCCC-CCHHHHHHHH---HCCCCCCEEEEEHHHHCCHHHHHHHH T ss_conf 786479987688899999998567------7376366201-5726599998---63986776777255314742898964 Q ss_pred -HHHHHHHC------CCCCE-------EEEEE----ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC Q ss_conf -88988510------56560-------79998----52654311356676543112101466442001358898875430 Q gi|254780804|r 100 -CLEEIIIK------NICNH-------IIIIK----SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161 (352) Q Consensus 100 -~l~~~~~~------~~~~~-------~li~~----a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~ 161 (352) +.+++... |..-+ +.++= ++.+ .++++.- .....-+.+|. ..++...|...++.. T Consensus 125 paMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~l--t~PLrdR---FGi~~rlefY~--~~eL~~Iv~r~a~~l 197 (332) T COG2255 125 PAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGML--TNPLRDR---FGIIQRLEFYT--VEELEEIVKRSAKIL 197 (332) T ss_pred HHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCC--CCHHHHH---CCCEEEEECCC--HHHHHHHHHHHHHHH T ss_conf 6753105778972487553476379981375101346645--6336886---28604540588--899999999888873 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH Q ss_conf 2566756799999620012355689999997510--3444348888877531 Q gi|254780804|r 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352) Q Consensus 162 g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352) ++.++++++..++.++-+-.+....-|...-=|+ .++..|+.+-..+.+. T Consensus 198 ~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~ 249 (332) T COG2255 198 GIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALK 249 (332) T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 8776857999999863699389999999999999981688204899999998 No 127 >KOG2170 consensus Probab=33.50 E-value=30 Score=14.06 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 45789889885105656079998 Q gi|254780804|r 95 KKVLDCLEEIIIKNICNHIIIIK 117 (352) Q Consensus 95 k~~~~~l~~~~~~~~~~~~li~~ 117 (352) .-+...+..+..+|.+.-.|++. T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLS 114 (344) T KOG2170 92 QLVVNALKSHWANPNPRKPLVLS 114 (344) T ss_pred HHHHHHHHHHHCCCCCCCCEEEE T ss_conf 99999999986289999875898 No 128 >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Probab=31.62 E-value=32 Score=13.86 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=89.2 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH-------------CCCCCC--CCE Q ss_conf 38479995699658999999999973356667730776208896418999999871-------------788888--823 Q gi|254780804|r 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-------------STSLFS--KKK 84 (352) Q Consensus 20 ~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~-------------t~slF~--~~k 84 (352) ..+ +||.||.---++..++.| ...+.....+|-.+... .+ +.+.+-.++. ...+|. +.= T Consensus 29 ~~p-VLI~GE~GtGK~~~Ar~I-H~~S~r~~~pfi~v~C~--~l--~~~~~e~~LFG~~~g~~~~~~~~~~g~le~a~gG 102 (325) T PRK11608 29 DKP-VLIIGERGTGKELIASRL-HYLSSRWQGPFISLNCA--AL--NENLLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (325) T ss_pred CCC-EEEECCCCCCHHHHHHHH-HHCCCCCCCCCEEEECC--CC--CHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC T ss_conf 999-898898983799999999-96588679997788779--89--9778899872775567677532468734356898 Q ss_pred EEEEECCCC-HHHHHHHHHHHHHC----------C-CCCEEEEEEEC-CCC---CCHHHHH-HHHHHHHHHHCCCCCCC- Q ss_conf 999847741-04578988988510----------5-65607999852-654---3113566-76543112101466442- Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIK----------N-ICNHIIIIKSN-EIK---KNNTLRK-IAEKFTSVLAISCYPDN- 146 (352) Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~----------~-~~~~~li~~a~-~l~---k~~kl~k-~~e~~~~~~~v~~~~~~- 146 (352) -+++++... +......|..+++. + ..++-+|..+. ++. ....++. ++.. -.+..|..+|+. T Consensus 103 TL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~dLy~r-L~~~~I~lPpLRe 181 (325) T PRK11608 103 TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDR-LAFDVVQLPPLRE 181 (325) T ss_pred EEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHH-HHHHHCCCCCHHH T ss_conf 699737454799999999999864908857998766564688713322089999839567999856-5301115868454 Q ss_pred -CHHHHHHHH----HHHHHCCC----CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHH Q ss_conf -001358898----87543025----6675679999962-001235568999999751034443488888 Q gi|254780804|r 147 -KIHLMDLIE----ESLLIGQK----SISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHV 206 (352) Q Consensus 147 -~~~l~~~i~----~~~~~~g~----~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI 206 (352) ..++...+. +..++.|. .++++|++.|..+ -.||.+.+.|-++...+.+.+ ..++.+++ T Consensus 182 R~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ierav~~~~~-~~~~~~~~ 250 (325) T PRK11608 182 RQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT-SDYPLDDI 250 (325) T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHH T ss_conf 7101999999999999998299988888999999996199996599999999999985688-76555542 No 129 >pfam04743 consensus Probab=30.26 E-value=33 Score=13.72 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=28.8 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5430256675679999962001235568999999751 Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 (352) Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly 194 (352) +.--|+.+|+.++..|.++-.++...+ -|.|||+.- T Consensus 112 lAvg~itvdds~l~~LLdKrAget~aL-mEMEKlAtA 147 (160) T pfam04743 112 LAVGGITVDDSALKALLDKRAGETVAL-MEMEKLATA 147 (160) T ss_pred HHHCCEEECHHHHHHHHHHHHHHHHHH-HHHHHHHHH T ss_conf 995470353788999988611118999-999999999 No 130 >TIGR02147 Fsuc_second hypothetical protein, TIGR02147; InterPro: IPR011873 This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterised.. Probab=29.35 E-value=35 Score=13.61 Aligned_cols=154 Identities=8% Similarity=0.008 Sum_probs=94.3 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHC----CCCCCHHH-H Q ss_conf 01358898875430256675679999962001235-568999999751034443488888775310----12211146-7 Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI-ASRNELQKLSSYCLEDILITEQHVKDIICD----THVLYIEE-I 221 (352) Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~-~l~~EleKL~ly~~~~~~It~~dI~~~v~~----~~~~~if~-L 221 (352) .+-+.|++++.....-.-..=....++++.|.+.. .. +.++ +.|++.+|..-|..+++. ..+...|. | T Consensus 8 ~dYR~yL~Dyye~rk~~~~~FS~R~fa~KaGfsS~r~~---~~~~---~~GK~~Lt~~~i~k~~~~l~Lde~E~~YF~~M 81 (281) T TIGR02147 8 TDYRKYLRDYYEERKKTDRAFSWRSFAEKAGFSSKRSY---LKRI---IKGKKNLTKRMIPKFAEALGLDEKEAAYFEAM 81 (281) T ss_pred HCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHH---HHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 03279999999998501543308999986488987778---8899---86667530003576665524672268999997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHH-HHHHHHHHHHH-----HHHHCCCCCHHHHHHHHCCCCCHHH Q ss_conf 8887641023699999998531100014-----58999-99999999999-----9830256898999986089999768 Q gi|254780804|r 222 INATIQGKIYNAIMLADFFLASKMPSHA-----LLHGF-LQKFQLLEKIH-----IIKECSNISFEKIIQKTEKNIIPMK 290 (352) Q Consensus 222 ~dai~~~~~~~a~~~l~~l~~~g~~~~~-----il~~L-~~~f~~L~~~~-----~~~~~~g~~~~~~~~~~~~p~~~~~ 290 (352) +...=.++.......++++......+.. ++..= ..+|+.++... ..+.-.|.+++.....+.|+ T Consensus 82 V~F~~Akt~~ek~~~f~~m~~~~~~~~~~qqml~l~~~~feyy~~Wy~sviRe~~~~~~~~~~~~~~la~~~~P~----- 156 (281) T TIGR02147 82 VAFNQAKTDAEKQQFFEEMQALKPRPKKRQQMLVLAKEQFEYYSHWYYSVIRELVAVMPFADDDPEELAKRLKPK----- 156 (281) T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC----- T ss_conf 411157886789999999998501301135776430888658762158999999875489999868999870798----- Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999998649989999999999999999532 Q gi|254780804|r 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 (352) Q Consensus 291 k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~ 322 (352) .|..++++.|..|.++.+--|. T Consensus 157 ----------IS~~qvk~sl~LL~~l~li~K~ 178 (281) T TIGR02147 157 ----------ISAEQVKESLDLLERLGLIKKN 178 (281) T ss_pred ----------CCHHHHHHHHHHHHHCCCCEEE T ss_conf ----------5789999999998623320110 No 131 >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Probab=28.70 E-value=35 Score=13.54 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=93.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH----------CCCCC--CCCEEEEEEC Q ss_conf 79995699658999999999973356667730776208896418999999871----------78888--8823999847 Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN----------STSLF--SKKKIILIEN 90 (352) Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~----------t~slF--~~~klIii~~ 90 (352) -.||.||----++..++.|- ........+|-. ++..-+ +.+.+-.++. ..+.| ++.-.+++++ T Consensus 350 pVLI~GE~GtGKe~lAraIH-~~S~r~~~pfv~--vnC~ai--~~~~~e~elfG~~~~~~~~g~~g~~e~A~gGTL~Lde 424 (639) T PRK11388 350 PILLCGEEGVGKALLAQAIH-NESERAAGPYIA--VNCQLL--PDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEK 424 (639) T ss_pred CEEEECCCCCCHHHHHHHHH-HCCCCCCCCEEE--EECCCC--CHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCEEEECC T ss_conf 68988989810999999999-557778998189--878989--8467899873877676434668624403698288467 Q ss_pred CCC-HHHHHHHHHHHHHC----CC-------CCEEEEEEEC-CCCC---CHHHHHHHHHHHHHHHCCCCCCCC--HHHHH Q ss_conf 741-04578988988510----56-------5607999852-6543---113566765431121014664420--01358 Q gi|254780804|r 91 LST-EKKVLDCLEEIIIK----NI-------CNHIIIIKSN-EIKK---NNTLRKIAEKFTSVLAISCYPDNK--IHLMD 152 (352) Q Consensus 91 ~~~-~k~~~~~l~~~~~~----~~-------~~~~li~~a~-~l~k---~~kl~k~~e~~~~~~~v~~~~~~~--~~l~~ 152 (352) ... .......|...++. +. -++.+|..+. ++.. ...++.-+-..-.+..|...|+.+ .++.. T Consensus 425 I~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~ 504 (639) T PRK11388 425 VEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPA 504 (639) T ss_pred HHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHH T ss_conf 26499999999999986593785699946664279997364508999874985499998767441057332325343999 Q ss_pred HHHHHHHH----CC--CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 89887543----02--56675679999962-00123556899999975103444348888877531 Q gi|254780804|r 153 LIEESLLI----GQ--KSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352) Q Consensus 153 ~i~~~~~~----~g--~~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352) ++..++.+ .| ..++++|...|..+ -.+|.+.+.|-++...+.+ +...|+.+|+-..+. T Consensus 505 L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~nvl~~a~~~~-~~~~I~~~~Lp~~~~ 569 (639) T PRK11388 505 LVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS-DNGRIRLSDLPEHLF 569 (639) T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC-CCCCCCHHHCCHHHH T ss_conf 99999999999719999989999999972899979999999999999838-998426797808775 No 132 >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Probab=27.80 E-value=37 Score=13.44 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=9.1 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 75679999962001235568 Q gi|254780804|r 166 SKEAKQILLANLGGDRIASR 185 (352) Q Consensus 166 ~~~a~~~L~~~~g~d~~~l~ 185 (352) .-.|.+++-+.+|.-...++ T Consensus 181 ~vkat~liGehVGdgar~Ih 200 (368) T COG1223 181 LVKATELIGEHVGDGARRIH 200 (368) T ss_pred EECHHHHHHHHHHHHHHHHH T ss_conf 71168888877435989999 No 133 >PRK04036 DNA polymerase II small subunit; Validated Probab=27.11 E-value=38 Score=13.36 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=5.7 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 55689999997510 Q gi|254780804|r 182 IASRNELQKLSSYC 195 (352) Q Consensus 182 ~~l~~EleKL~ly~ 195 (352) ..+..+.+|..-+. T Consensus 251 ~Fle~~w~kFi~Wl 264 (497) T PRK04036 251 EFLEDAFEKFLDWL 264 (497) T ss_pred HHHHHHHHHHHHHH T ss_conf 78799999999986 No 134 >KOG2680 consensus Probab=26.14 E-value=39 Score=13.25 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=32.9 Q ss_pred HHHHCCCCCCCCH---HHHHHHHHCCCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 9751034443488---888775310122111467------88876410236999999985311000145899 Q gi|254780804|r 191 LSSYCLEDILITE---QHVKDIICDTHVLYIEEI------INATIQGKIYNAIMLADFFLASKMPSHALLHG 253 (352) Q Consensus 191 L~ly~~~~~~It~---~dI~~~v~~~~~~~if~L------~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~ 253 (352) |++|.|+.+.|-. +.|..-|..+.+..--++ +|-+-.-| .+++..+++.+.....|+.+.++ T Consensus 254 lALFsGdTGEIr~EvRdqin~KV~eWreEGKAeivpGVLFIDEvHMLD-IEcFsFlNrAlE~d~~PiiimaT 324 (454) T KOG2680 254 LALFSGDTGEIRSEVRDQINTKVAEWREEGKAEIVPGVLFIDEVHMLD-IECFSFLNRALENDMAPIIIMAT 324 (454) T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEHHHH-HHHHHHHHHHHHHCCCCEEEEEC T ss_conf 899707865201888988878889888617724225517874002111-57999888876504685799972 No 135 >TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm. Probab=25.18 E-value=41 Score=13.13 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=14.9 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCC Q ss_conf 479995699658999999999973356 Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISIT 48 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~ 48 (352) +||+.+|+-.||+= +.+.+..+.. T Consensus 71 ~~YF~~GNRDFLiG---~~Far~aG~~ 94 (241) T TIGR01854 71 PCYFMHGNRDFLIG---KRFAREAGMT 94 (241) T ss_pred EEEEECCCCHHHHH---HHHHHHHCCE T ss_conf 79840598515666---8999970881 No 136 >KOG2794 consensus Probab=24.07 E-value=43 Score=13.00 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=7.3 Q ss_pred CCCEEEEECCCH Q ss_conf 384799956996 Q gi|254780804|r 20 SHFVFIFYGSDK 31 (352) Q Consensus 20 ~~~iyLi~G~d~ 31 (352) -+++|+--|+|. T Consensus 42 iyPlFI~e~~dd 53 (340) T KOG2794 42 IYPLFIHEGEDD 53 (340) T ss_pred EEEEEEECCCCC T ss_conf 356887427655 No 137 >TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR; InterPro: IPR010134 This entry identifies the polyhydroxyalkanoate synthesis repressor, PhaR and related proteins. The gene for PhaR regulatory protein is found in general near other genes encoding proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules. The C-terminal region is poorly conserved in this family of proteins.. Probab=23.51 E-value=44 Score=12.93 Aligned_cols=55 Identities=7% Similarity=0.158 Sum_probs=35.5 Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHH-HHCCCHH---HHHHHHH Q ss_conf 434888887753101221114678887641023699--99999853-1100014---5899999 Q gi|254780804|r 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI--MLADFFLA-SKMPSHA---LLHGFLQ 256 (352) Q Consensus 199 ~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~--~~l~~l~~-~g~~~~~---il~~L~~ 256 (352) .=||.|||..+|-.-.+ |..+||--.-|+-+++ +++-+--. .|+.|+. +|+.|.| T Consensus 18 ~YvTLEd~~~lv~~G~e---f~V~D~Ksg~D~TR~~LLQIIaeeE~r~G~qp~ls~~~L~~iIR 78 (109) T TIGR01848 18 SYVTLEDIRDLVVEGRE---FKVVDAKSGDDLTRSVLLQIIAEEEERGGEQPLLSTDFLTQIIR 78 (109) T ss_pred CCCCHHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 41008659987127987---06875478985368899999988651798598464889999988 No 138 >TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase; InterPro: IPR006372 These are a subfamily of a large family of polyprenyltransferases that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.; GO: 0030494 bacteriochlorophyll biosynthetic process. Probab=22.61 E-value=35 Score=13.62 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=16.0 Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 43488888775310122111467888764102369 Q gi|254780804|r 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 (352) Q Consensus 199 ~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a 233 (352) +-.+..|++.+=+|.. --+-.|-=.+..+...+. T Consensus 188 Gi~~lNDfKSveGDr~-lGl~SLpV~~G~~~aa~~ 221 (295) T TIGR01476 188 GIMTLNDFKSVEGDRQ-LGLRSLPVMLGVKVAAKL 221 (295) T ss_pred HHHHHHHHHHCCCCHH-CCCCCCCHHHHHHHHHHH T ss_conf 6677732452015113-463201103124667899 No 139 >pfam04533 Herpes_U44 Herpes virus U44 protein. This is a family of proteins from dsDNA beta-herpesvirinae and gamma-herpesvirinae viruses. The function is not known, and the proteins are named variously as U44, BSRF1, UL71, and M71. The family BSRF1 has been merged into this. Probab=22.49 E-value=46 Score=12.80 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=38.5 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCC Q ss_conf 4302566756799999620012355689999997510-3444348888877531012 Q gi|254780804|r 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTH 214 (352) Q Consensus 159 ~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~-~~~~~It~~dI~~~v~~~~ 214 (352) .--++.++.++++.|.++-.+|...+ -|.|||+... .++...=..+|..+++... T Consensus 119 avg~~t~~~~~l~~LL~K~a~d~~~L-~emeK~at~i~~D~S~~WA~EI~~il~~~~ 174 (211) T pfam04533 119 AVGEITIDDSALKALLNKRAGDTVAL-MEMEKLATAIKMDNSKAWATEIDPILHSET 174 (211) T ss_pred HHCCEEECHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC T ss_conf 86211543778999998641007889-999999989831536789998537763676 No 140 >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Probab=21.72 E-value=48 Score=12.70 Aligned_cols=35 Identities=3% Similarity=0.040 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHH Q ss_conf 99999999999953289--------998999999999999963 Q gi|254780804|r 308 ETLHKIDHRIHLARKKK--------YLEKNIIFQTILYIAQTA 342 (352) Q Consensus 308 ~~l~~L~~~d~~~K~~~--------~~~~~il~~~ll~l~~~a 342 (352) +++..+.++-+-+++.+ .+...+++++=-.++... T Consensus 394 ~~vd~l~dalliL~~d~Lpnqr~~~~n~~~llek~g~~m~~~i 436 (450) T COG5095 394 RVVDLLKDALLILQSDGLPNQRTLPPNASGLLEKVGSLMAEKI 436 (450) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8999999889998326999756799757789999989999999 No 141 >KOG2227 consensus Probab=21.16 E-value=49 Score=12.62 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCH-------HHHHHHHHCCCCC Q ss_conf 887532100101384799956996589999999999733566677307762088964189-------9999987178888 Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-------STFWNEINSTSLF 80 (352) Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~-------~~l~~~~~t~slF 80 (352) +|+...-+.. ....+|+- |....-.......+...+.... -.++.+.+....+.... +.+..++.+.+.+ T Consensus 164 ~F~~~hle~~-t~gSlYVs-G~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~ 240 (529) T KOG2227 164 EFFSLHLELN-TSGSLYVS-GQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTG 240 (529) T ss_pred HHHHHHHHCC-CCCCEEEE-CCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHH T ss_conf 9998543126-67645751-7998654889999987403431-6651699851235425889999988898874289504 Q ss_pred ------------CCC-EEEEEECCCC-H-HHHHHHHHHHHHC---CCCCEEEEEEECCCCCCHHHHHHHHH-HH-HHHHC Q ss_conf ------------882-3999847741-0-4578988988510---56560799985265431135667654-31-12101 Q gi|254780804|r 81 ------------SKK-KIILIENLST-E-KKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEK-FT-SVLAI 140 (352) Q Consensus 81 ------------~~~-klIii~~~~~-~-k~~~~~l~~~~~~---~~~~~~li~~a~~l~k~~kl~k~~e~-~~-~~~~v 140 (352) ..+ -+|+|-|--+ . ......|-.++++ |....++|-.|..++-...+---+.. .+ .--.+ T Consensus 241 ~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529) T KOG2227 241 MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529) T ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 78999999987525633898721256776046531432100136776605666400135577777666540257887466 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4664420013588988754302566756-7999996200123556899999 Q gi|254780804|r 141 SCYPDNKIHLMDLIEESLLIGQKSISKE-AKQILLANLGGDRIASRNELQK 190 (352) Q Consensus 141 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~-a~~~L~~~~g~d~~~l~~EleK 190 (352) .|.|=+.+++...+.+++...--.+... |+++.+..+.+..+.+...|+- T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529) T KOG2227 321 VFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529) T ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 556878899999999997405443330389999999862576128999999 No 142 >pfam08158 NUC130_3NT NUC130/3NT domain. This N terminal domain is found in a novel nucleolar protein family. Probab=20.67 E-value=50 Score=12.56 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=30.5 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 01466442001358898875430256675679999962 Q gi|254780804|r 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352) Q Consensus 139 ~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352) +-+|||....+.++-+.+.++++.-.++++.-..++.. T Consensus 5 Va~cYP~~~~~Fp~~L~~lL~~~~~~L~~dlR~~~v~s 42 (52) T pfam08158 5 VAHCYPKETADFPEELKELLLNHHTVLDPDLREKIVKS 42 (52) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 13626788998799999999984131999999999999 No 143 >TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception. Probab=20.18 E-value=51 Score=12.49 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=136.3 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCE----------------- Q ss_conf 479995699658999999999973356667730776208896418999999871788888823----------------- Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK----------------- 84 (352) Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~k----------------- 84 (352) .-+||.||----++-.+..+ ..+++-...||--.-.-. -|..|+++ =|||=.| T Consensus 159 l~VlI~GESGTGKELVA~AL-H~~s~R~~~PFiAlNmAA-----IP~~L~ES----ELFGHEkGAFTGA~~~~~GRFEQA 228 (471) T TIGR01818 159 LSVLINGESGTGKELVARAL-HRHSPRARGPFIALNMAA-----IPKDLIES----ELFGHEKGAFTGANTRRQGRFEQA 228 (471) T ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCCCEEECHHH-----CCHHHHHH----HHCCCCCCCCCCCCCCCCCCEEEC T ss_conf 05888557577589999984-013755577732730232-----22466554----321456530001025567772534 Q ss_pred ---EEEEECCCC-HHHHHHHHHHHHHC----------CCC-CEEEEEEEC--CCCCC---HHHHHHHHHHHHHHHCCCCC Q ss_conf ---999847741-04578988988510----------565-607999852--65431---13566765431121014664 Q gi|254780804|r 85 ---IILIENLST-EKKVLDCLEEIIIK----------NIC-NHIIIIKSN--EIKKN---NTLRKIAEKFTSVLAISCYP 144 (352) Q Consensus 85 ---lIii~~~~~-~k~~~~~l~~~~~~----------~~~-~~~li~~a~--~l~k~---~kl~k~~e~~~~~~~v~~~~ 144 (352) -+.++..++ +-....-|...+.. |.. |+- |+-|. +++.. -++|.=+---=+++-|..+| T Consensus 229 ~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p~k~DVR-i~AAThq~Le~lv~~G~FReDLfhRL~Vi~i~lPp 307 (471) T TIGR01818 229 DGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTPIKVDVR-IVAATHQDLEALVRQGKFREDLFHRLNVIRIHLPP 307 (471) T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEEE-EEECCCHHHHHHHHCCCCHHHHHHHHCEEEECCCC T ss_conf 88821010216787768777988640786577268202455046-67336656899965588135555512334621687 Q ss_pred --CCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC Q ss_conf --42001358898875430-------256675679999962-00123556899999975103444348888877531012 Q gi|254780804|r 145 --DNKIHLMDLIEESLLIG-------QKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352) Q Consensus 145 --~~~~~l~~~i~~~~~~~-------g~~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352) +...+++..++.++... -..+++++.+.|-.+ =.||-+.|.|-+-.|+..+.+ ..|..+||..-+..+. T Consensus 308 LrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~L~~~~WPGNVR~LEN~cR~l~~la~~-~~v~~~d~~~eLA~~~ 386 (471) T TIGR01818 308 LRERREDIPRLARHFLALAAKELDVEPKLLSPEALEALKRYDWPGNVRELENVCRRLTVLASG-DEVLVSDLPAELALSE 386 (471) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCHHHCCCC T ss_conf 212266899999999999887428651134889999997258898524577899999873467-6467777576556776 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC Q ss_conf 21114678887641023699999-99853---110001458999999999999999830256898999986089 Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLA-DFFLA---SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 (352) Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l-~~l~~---~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~ 284 (352) ....-.-.+.....+...++..+ ...+. +|.+...++......|.+.+.-.++..+.|... ++...++. T Consensus 387 ~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~G~P~~~L~~~~~~~~er~Ll~~AL~~T~G~~~-~AA~~LG~ 459 (471) T TIGR01818 387 RKASAPDSDAVQQDDWEEALEAWAKQALSSGKDGVPEQGLLDEALPELERTLLEAALQHTRGRKQ-EAAKLLGL 459 (471) T ss_pred CCHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHCCC T ss_conf 31010001022034699999999999862145678816689999998739999999973455068-99986188 No 144 >pfam08319 consensus Probab=20.08 E-value=51 Score=12.47 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=45.5 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 5789889885105656079998526543--------1135667654311210146--64420013588988754302566 Q gi|254780804|r 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK--------NNTLRKIAEKFTSVLAISC--YPDNKIHLMDLIEESLLIGQKSI 165 (352) Q Consensus 96 ~~~~~l~~~~~~~~~~~~li~~a~~l~k--------~~kl~k~~e~~~~~~~v~~--~~~~~~~l~~~i~~~~~~~g~~i 165 (352) ...+.....+...|.++++++.-+.+.. ...+++.+..+.....|+- -..+..++...+++.+...-..+ T Consensus 51 ~~~~~~k~~Ls~CpSd~YviI~QPGl~a~Df~~~~~~p~L~~~v~~s~s~~~v~eV~g~ld~~~L~~~i~~~C~~~~~~v 130 (305) T pfam08319 51 DFLDDAKKLLSSCPSDTYVIVNQPGLHAADFETEDSFPFLRRYVLRSSSTVAVPEVVGQLDLDQLESYIESTCGAETTVI 130 (305) T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 89999999972699870799857997566531510057999998269961773322266788999999997637767872 Q ss_pred CHHHHHHHH Q ss_conf 756799999 Q gi|254780804|r 166 SKEAKQILL 174 (352) Q Consensus 166 ~~~a~~~L~ 174 (352) +.+...... T Consensus 131 ~~~~~~~~~ 139 (305) T pfam08319 131 DGSSTDFPS 139 (305) T ss_pred CCCCCCCCC T ss_conf 577665531 Done!