HHsearch alignment for GI: 254780804 and conserved domain: pfam00308

>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.27  E-value=2.7e-05  Score=54.07  Aligned_cols=169  Identities=12%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCC------CCCCCEEEEEECCCC---
Q ss_conf             79995699658999999999973356667730776208896418999999871788------888823999847741---
Q gi|254780804|r   23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS------LFSKKKIILIENLST---   93 (352)
Q Consensus        23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~s------lF~~~klIii~~~~~---   93 (352)
T Consensus        36 pl~i~G~~G~GKTHLLqA~~~~~~~~-~~~~~v~yl~~~~~~~~~---~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l~~  111 (219)
T pfam00308        36 PLFIYGGVGLGKTHLLHAIGNYALRN-FPNLRVVYLTSEEFLNDF---VDALRDNKIEAFKKSYRNVDLLLIDDIQFLAG  111 (219)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHH---HHHHHCCCHHHHHHHHHHCCHHHHCCHHHHCC
T ss_conf             26998899998889999999999984-999828884399999988---99998188889999976323365223676568


Q ss_pred             HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             04578988988510-565607999852654311--356676543112101466442001358898875430256675679
Q gi|254780804|r   94 EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK  170 (352)
Q Consensus        94 ~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~  170 (352)
T Consensus       112 ~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~  191 (219)
T pfam00308       112 KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVL  191 (219)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             64789999999999997298699977998100245327799998687566116999999999999999984999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999620012355689999997510
Q gi|254780804|r  171 QILLANLGGDRIASRNELQKLSSYC  195 (352)
Q Consensus       171 ~~L~~~~g~d~~~l~~EleKL~ly~  195 (352)
T Consensus       192 ~yl~~r~~R~~r~L~~~L~~L~~~~  216 (219)
T pfam00308       192 NFIAQRITDNVRELEGALNRLLAFA  216 (219)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             9999842798999999999999855