HHsearch alignment for GI: 254780804 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.27 E-value=2.7e-05 Score=54.07 Aligned_cols=169 Identities=12% Similarity=0.177 Sum_probs=109.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCC------CCCCCEEEEEECCCC---
Q ss_conf 79995699658999999999973356667730776208896418999999871788------888823999847741---
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS------LFSKKKIILIENLST--- 93 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~s------lF~~~klIii~~~~~--- 93 (352)
T Consensus 36 pl~i~G~~G~GKTHLLqA~~~~~~~~-~~~~~v~yl~~~~~~~~~---~~~l~~~~~~~f~~~l~~~d~l~iDDi~~l~~ 111 (219)
T pfam00308 36 PLFIYGGVGLGKTHLLHAIGNYALRN-FPNLRVVYLTSEEFLNDF---VDALRDNKIEAFKKSYRNVDLLLIDDIQFLAG 111 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHH---HHHHHCCCHHHHHHHHHHCCHHHHCCHHHHCC
T ss_conf 26998899998889999999999984-999828884399999988---99998188889999976323365223676568
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 04578988988510-565607999852654311--356676543112101466442001358898875430256675679
Q gi|254780804|r 94 EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 (352)
Q Consensus 94 ~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~ 170 (352)
T Consensus 112 ~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~ 191 (219)
T pfam00308 112 KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVL 191 (219)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 64789999999999997298699977998100245327799998687566116999999999999999984999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999620012355689999997510
Q gi|254780804|r 171 QILLANLGGDRIASRNELQKLSSYC 195 (352)
Q Consensus 171 ~~L~~~~g~d~~~l~~EleKL~ly~ 195 (352)
T Consensus 192 ~yl~~r~~R~~r~L~~~L~~L~~~~ 216 (219)
T pfam00308 192 NFIAQRITDNVRELEGALNRLLAFA 216 (219)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999842798999999999999855