HHsearch alignment for GI: 254780804 and conserved domain: pfam06144
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=99.96 E-value=6.9e-28 Score=203.80 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=147.1
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-----HHHHH
Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741-----04578
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-----EKKVL 98 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-----~k~~~ 98 (352)
T Consensus 1 Yll~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~~~--~~~~i~~~~~t~slF~~~rlvii~~~~~~~~~~~~~~~ 78 (172)
T pfam06144 1 YLLYGEDPFLLEETKDQILKAALDQGFEDFNYIYFDLEED--WADDVLEECETLPFFSDKRIVILNNPNLKESKLNEKLL 78 (172)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC--CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 9797285999999999999997379973036898627766--69999999728998889769999776424455539999
Q ss_pred HHHHHHHHCCCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 988988510565607999852-6543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r 99 DCLEEIIIKNICNHIIIIKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 (352)
Q Consensus 99 ~~l~~~~~~~~~~~~li~~a~-~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~ 177 (352)
T Consensus 79 ~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k--~~~~i~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~ 156 (172)
T pfam06144 79 KRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKK--KATVVECFTLKEEELIQWIQKRAKELGLKIEKDALQLLAEKV 156 (172)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH--CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999999836998728999836741367888999983--766999348987899999999999849998999999999997
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 0123556899999975
Q gi|254780804|r 178 GGDRIASRNELQKLSS 193 (352)
Q Consensus 178 g~d~~~l~~EleKL~l 193 (352)
T Consensus 157 g~nl~~l~~EieKL~L 172 (172)
T pfam06144 157 ENNLLAIAQELEKLAL 172 (172)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 8489999999997668