HHsearch alignment for GI: 254780804 and conserved domain: pfam06144

>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=99.96  E-value=6.9e-28  Score=203.80  Aligned_cols=166  Identities=23%  Similarity=0.350  Sum_probs=147.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-----HHHHH
Q ss_conf             9995699658999999999973356667730776208896418999999871788888823999847741-----04578
Q gi|254780804|r   24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-----EKKVL   98 (352)
Q Consensus        24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-----~k~~~   98 (352)
T Consensus         1 Yll~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~~~--~~~~i~~~~~t~slF~~~rlvii~~~~~~~~~~~~~~~   78 (172)
T pfam06144         1 YLLYGEDPFLLEETKDQILKAALDQGFEDFNYIYFDLEED--WADDVLEECETLPFFSDKRIVILNNPNLKESKLNEKLL   78 (172)
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC--CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf             9797285999999999999997379973036898627766--69999999728998889769999776424455539999


Q ss_pred             HHHHHHHHCCCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             988988510565607999852-6543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r   99 DCLEEIIIKNICNHIIIIKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL  177 (352)
Q Consensus        99 ~~l~~~~~~~~~~~~li~~a~-~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~  177 (352)
T Consensus        79 ~~l~~~l~~~~~~~~lv~~~~~~~~~~~k~~k~l~k--~~~~i~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~  156 (172)
T pfam06144        79 KRLEEYLSNPPEDTLLIIEAPGKLDERKKLTKLLKK--KATVVECFTLKEEELIQWIQKRAKELGLKIEKDALQLLAEKV  156 (172)
T ss_pred             HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH--CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999999836998728999836741367888999983--766999348987899999999999849998999999999997


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             0123556899999975
Q gi|254780804|r  178 GGDRIASRNELQKLSS  193 (352)
Q Consensus       178 g~d~~~l~~EleKL~l  193 (352)
T Consensus       157 g~nl~~l~~EieKL~L  172 (172)
T pfam06144       157 ENNLLAIAQELEKLAL  172 (172)
T ss_pred             CHHHHHHHHHHHHHCC
T ss_conf             8489999999997668