HHsearch alignment of GI: 254780804 and MMDB domain: 1jr3_D_1-144

>1jr3_D (D:1-144) DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli}
Probab=99.80  E-value=1.8e-19  Score=147.63  Aligned_cols=141  Identities=11%  Similarity=0.147  Sum_probs=122.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf             97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r    1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF   80 (352)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF   80 (352)
                      |..|++.++-+..+++.   .++|+|||+|.|++++.++++.+.+..+ +.++++..+++.+.  |++.+++++.|+|||
T Consensus         1 Mm~i~~~~l~~~~~~~~---~~~yl~~G~d~~li~~~~~~i~~~~~~~-~~~~~~~~~~~~~~--d~~~l~~~~~s~slF   74 (144)
T 1jr3_D            1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNT--DWNAIFSLCQAMSLF   74 (144)
T ss_dssp             CEEECTTTHHHHHHHCC---CSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTC--CHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCC--CHHHHHHHHHCCCCC
T ss_conf             99789999999983679---9779997694999999999999987508-98520566157778--999999997268988


Q ss_pred             CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCC
Q ss_conf             8823999847741--0457898898851056560799985265431135667654-31121014664420
Q gi|254780804|r   81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNK  147 (352)
Q Consensus        81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~  147 (352)
                      |++|+|||+++..  .++..+.|.+|+.+|++++++|+.++++++.++.+++++. .+.+.++.|+++++
T Consensus        75 ~~~klvii~~~~~~~~k~~~~~l~~~~~~~~~~~~li~~~~~~~k~~~~~k~~k~l~~~~~vi~~~~~~e  144 (144)
T 1jr3_D           75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ  144 (144)
T ss_dssp             CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred             CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCH
T ss_conf             8862002204432334059999999863799885999982674202268999998754668960689988