HHsearch alignment of GI: 254780804 and MMDB domain: 1jr3_D_1-144
>1jr3_D (D:1-144) DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli}
Probab=99.80 E-value=1.8e-19 Score=147.63 Aligned_cols=141 Identities=11% Similarity=0.147 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
|..|++.++-+..+++. .++|+|||+|.|++++.++++.+.+..+ +.++++..+++.+. |++.+++++.|+|||
T Consensus 1 Mm~i~~~~l~~~~~~~~---~~~yl~~G~d~~li~~~~~~i~~~~~~~-~~~~~~~~~~~~~~--d~~~l~~~~~s~slF 74 (144)
T 1jr3_D 1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNT--DWNAIFSLCQAMSLF 74 (144)
T ss_dssp CEEECTTTHHHHHHHCC---CSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTC--CHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCC--CHHHHHHHHHCCCCC
T ss_conf 99789999999983679---9779997694999999999999987508-98520566157778--999999997268988
Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCC
Q ss_conf 8823999847741--0457898898851056560799985265431135667654-31121014664420
Q gi|254780804|r 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNK 147 (352)
Q Consensus 81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~ 147 (352)
|++|+|||+++.. .++..+.|.+|+.+|++++++|+.++++++.++.+++++. .+.+.++.|+++++
T Consensus 75 ~~~klvii~~~~~~~~k~~~~~l~~~~~~~~~~~~li~~~~~~~k~~~~~k~~k~l~~~~~vi~~~~~~e 144 (144)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (144)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCH
T ss_conf 8862002204432334059999999863799885999982674202268999998754668960689988