Query gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs 150 out of 1917
Neff 8.6
Searched_HMMs 33803
Date Wed Jun 1 13:40:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780804.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1jr3_D DNA polymerase III, de 99.8 1.8E-19 5.2E-24 147.6 9.5 141 1-147 1-144 (144)
2 >1jql_B DNA polymerase III, de 99.8 2.4E-18 7.1E-23 140.1 11.7 136 1-142 1-139 (140)
3 >1jr3_D DNA polymerase III, de 99.6 4.6E-15 1.4E-19 118.4 10.2 124 216-343 1-125 (132)
4 >1jr3_D DNA polymerase III, de 99.2 1.9E-11 5.7E-16 94.4 6.0 65 149-214 2-66 (67)
5 >1jr3_A DNA polymerase III sub 99.0 5.6E-09 1.7E-13 78.0 11.5 116 215-343 3-118 (130)
6 >1jr3_A DNA polymerase III sub 97.4 0.00046 1.3E-08 45.5 6.6 64 147-212 3-66 (66)
7 >1njg_A DNA polymerase III sub 97.4 0.00053 1.6E-08 45.1 6.5 64 147-212 2-65 (65)
8 >2chq_A Replication factor C s 97.3 0.001 3.1E-08 43.1 6.8 63 147-212 3-65 (65)
9 >1sxj_C Activator 1 40 kDa sub 97.2 0.0005 1.5E-08 45.3 4.6 66 146-211 2-69 (70)
10 >1iqp_A RFCS; clamp loader, ex 97.2 0.001 3E-08 43.3 6.1 63 147-212 3-65 (65)
11 >2chg_A Replication factor C s 97.2 0.0014 4.1E-08 42.3 6.8 63 147-212 3-65 (66)
12 >1sxj_B Activator 1 37 kDa sub 97.0 0.0019 5.7E-08 41.4 6.4 63 147-212 2-64 (64)
13 >3bos_A Putative DNA replicati 96.4 0.011 3.4E-07 36.2 6.7 63 149-211 3-66 (67)
14 >1sxj_B Activator 1 37 kDa sub 96.4 0.052 1.5E-06 31.9 9.8 113 8-123 31-149 (166)
15 >1sxj_E Activator 1 40 kDa sub 96.3 0.0025 7.4E-08 40.6 2.6 59 146-206 2-61 (62)
16 >1sxj_D Activator 1 41 kDa sub 96.2 0.0025 7.4E-08 40.6 2.2 60 147-209 3-62 (64)
17 >2gno_A DNA polymerase III, ga 96.1 0.1 3E-06 29.9 10.1 115 7-123 6-124 (140)
18 >2z4s_A Chromosomal replicatio 96.0 0.019 5.6E-07 34.8 6.0 83 146-228 2-92 (178)
19 >1sxj_A Activator 1 95 kDa sub 95.8 0.015 4.3E-07 35.6 4.6 50 146-195 2-51 (53)
20 >1njg_A DNA polymerase III sub 95.7 0.14 4.2E-06 29.0 10.4 115 8-123 33-168 (185)
21 >2qby_B CDC6 homolog 3, cell d 94.5 0.16 4.7E-06 28.7 6.8 94 146-243 2-100 (113)
22 >1jr3_A DNA polymerase III sub 94.2 0.38 1.1E-05 26.2 11.2 113 10-123 28-161 (177)
23 >2v1u_A Cell division control 93.8 0.18 5.5E-06 28.2 6.0 79 146-224 2-87 (107)
24 >1sxj_E Activator 1 40 kDa sub 93.6 0.48 1.4E-05 25.5 8.7 101 23-123 38-176 (192)
25 >1sxj_C Activator 1 40 kDa sub 93.5 0.49 1.5E-05 25.4 8.5 112 9-123 36-152 (168)
26 >2c9o_A RUVB-like 1; hexameric 93.4 0.24 7.2E-06 27.4 6.0 65 146-210 2-69 (73)
27 >1w5s_A ORC2; CDC6, DNA replic 92.6 0.49 1.4E-05 25.5 6.6 69 146-214 2-80 (86)
28 >2qby_A CDC6 homolog 1, cell d 92.0 0.49 1.4E-05 25.4 6.0 69 147-215 3-78 (108)
29 >1sxj_D Activator 1 41 kDa sub 91.4 0.9 2.7E-05 23.7 11.0 97 206-340 1-97 (98)
30 >1id3_B Histone H4; nucleosome 91.1 0.75 2.2E-05 24.2 6.2 63 151-214 31-94 (102)
31 >1a5t_A Delta prime, HOLB; zin 90.9 1 3E-05 23.4 11.9 115 8-123 12-150 (166)
32 >1iqp_A RFCS; clamp loader, ex 90.6 1.1 3.2E-05 23.2 10.5 101 22-123 47-152 (168)
33 >2hue_C Histone H4; mini beta 90.4 0.96 2.9E-05 23.5 6.2 64 151-215 13-77 (84)
34 >1tzy_D Histone H4-VI; histone 89.6 1.2 3.6E-05 22.8 6.2 63 151-214 32-95 (103)
35 >2v6z_M DNA polymerase epsilon 88.7 1.3 4E-05 22.5 5.9 66 146-211 26-96 (99)
36 >1fnn_A CDC6P, cell division c 87.6 1.7 5.2E-05 21.8 6.7 68 147-214 3-83 (89)
37 >1taf_B TFIID TBP associated f 87.0 1.9 5.5E-05 21.6 6.7 58 152-210 10-68 (70)
38 >3ctd_A Putative ATPase, AAA f 86.0 0.96 2.8E-05 23.5 3.9 63 197-266 8-80 (127)
39 >1ojl_A Transcriptional regula 85.0 2.1 6.3E-05 21.2 5.3 62 151-213 10-75 (76)
40 >1ny5_A Transcriptional regula 82.6 2.9 8.7E-05 20.3 5.9 59 152-211 11-73 (75)
41 >1hqc_A RUVB; extended AAA-ATP 82.6 3 8.7E-05 20.3 6.3 65 147-211 3-69 (80)
42 >1b67_A Protein (histone HMFA) 81.3 3.3 9.7E-05 20.0 6.5 60 152-212 6-66 (68)
43 >1ku5_A HPHA, archaeal histon; 79.9 3.6 0.00011 19.7 6.4 58 152-210 10-68 (70)
44 >1in4_A RUVB, holliday junctio 78.9 3.9 0.00012 19.5 6.5 65 147-211 3-69 (75)
45 >1sxj_C Activator 1 40 kDa sub 77.1 4.2 0.00013 19.2 4.5 89 216-342 4-93 (102)
46 >2chq_A Replication factor C s 77.0 4.4 0.00013 19.1 9.2 89 216-343 4-93 (94)
47 >1iqp_A RFCS; clamp loader, ex 75.0 5 0.00015 18.8 9.6 89 216-343 4-93 (94)
48 >2bjv_A PSP operon transcripti 71.7 4.6 0.00014 19.0 3.6 61 152-213 11-76 (84)
49 >3ezx_A MMCP 1, monomethylamin 66.3 6.1 0.00018 18.2 3.2 43 217-259 5-48 (85)
50 >3bul_A Methionine synthase; t 65.5 7.4 0.00022 17.6 3.6 46 213-258 7-53 (94)
51 >2i2x_B MTAC, methyltransferas 62.7 8.3 0.00025 17.3 3.4 47 213-259 16-63 (99)
52 >1h3o_A Transcription initiati 51.3 14 0.0004 15.9 4.3 48 147-197 5-53 (75)
53 >1zl8_A LIN-7; heterodimer, al 44.1 18 0.00052 15.1 3.5 32 225-256 4-35 (53)
54 >2keb_A DNA polymerase subunit 44.0 18 0.00052 15.1 5.4 61 151-211 28-90 (101)
55 >1sxj_B Activator 1 37 kDa sub 41.4 19 0.00057 14.9 9.1 89 218-344 3-92 (93)
56 >3dzd_A Transcriptional regula 40.8 20 0.00058 14.8 5.5 50 152-202 12-65 (66)
57 >1y74_A LIN 7 homolog B; L27 d 39.1 21 0.00062 14.6 3.9 32 226-257 3-34 (57)
58 >2jss_A Chimera of histone H2B 36.9 23 0.00067 14.4 6.6 68 151-219 6-75 (192)
59 >3f8t_A Predicted ATPase invol 34.8 14 0.0004 15.9 0.8 80 161-240 298-378 (398)
60 >1tzy_B Histone H2B; histone-f 33.4 26 0.00076 14.1 5.9 64 150-214 38-103 (126)
61 >1n1j_A NF-YB; histone-like PA 33.2 26 0.00076 14.0 7.1 71 154-225 14-87 (93)
62 >2nqb_D Histone H2B; nucleosom 30.1 29 0.00086 13.7 4.8 64 150-214 35-100 (123)
63 >2byk_A Chrac-16; nucleosome s 29.5 30 0.00088 13.6 5.7 65 154-218 25-91 (140)
64 >2krk_A 26S protease regulator 28.6 31 0.00091 13.5 4.1 73 140-213 6-81 (86)
65 >1f1e_A Histone fold protein; 25.0 36 0.0011 13.1 6.2 61 152-213 87-147 (154)
66 >3kw6_A 26S protease regulator 24.6 36 0.0011 13.1 4.9 67 146-213 4-73 (78)
67 >2chg_A Replication factor C s 22.1 40 0.0012 12.7 10.3 113 8-123 27-144 (160)
68 >2chq_A Replication factor C s 21.4 42 0.0012 12.7 8.7 113 8-123 27-144 (160)
69 >2ohh_A Type A flavoprotein FP 20.5 43 0.0013 12.5 8.6 132 19-160 1-147 (150)
70 >3h38_A TRNA nucleotidyl trans 20.3 44 0.0013 12.5 3.9 39 156-194 23-67 (87)
No 1
>>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (D:1-144)
Probab=99.80 E-value=1.8e-19 Score=147.63 Aligned_cols=141 Identities=11% Similarity=0.147 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
|..|++.++-+..+++. .++|+|||+|.|++++.++++.+.+..+ +.++++..+++.+. |++.+++++.|+|||
T Consensus 1 Mm~i~~~~l~~~~~~~~---~~~yl~~G~d~~li~~~~~~i~~~~~~~-~~~~~~~~~~~~~~--d~~~l~~~~~s~slF 74 (144)
T 1jr3_D 1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNT--DWNAIFSLCQAMSLF 74 (144)
T ss_dssp CEEECTTTHHHHHHHCC---CSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTC--CHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCC--CHHHHHHHHHCCCCC
T ss_conf 99789999999983679---9779997694999999999999987508-98520566157778--999999997268988
Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCC
Q ss_conf 8823999847741--0457898898851056560799985265431135667654-31121014664420
Q gi|254780804|r 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNK 147 (352)
Q Consensus 81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~ 147 (352)
|++|+|||+++.. .++..+.|.+|+.+|++++++|+.++++++.++.+++++. .+.+.++.|+++++
T Consensus 75 ~~~klvii~~~~~~~~k~~~~~l~~~~~~~~~~~~li~~~~~~~k~~~~~k~~k~l~~~~~vi~~~~~~e 144 (144)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (144)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCH
T ss_conf 8862002204432334059999999863799885999982674202268999998754668960689988
No 2
>>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} (B:)
Probab=99.78 E-value=2.4e-18 Score=140.15 Aligned_cols=136 Identities=11% Similarity=0.163 Sum_probs=117.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
|..|+..++-+..++++ .++|++||+|.|++++.++.+.+.+..+ +.+++...+++.+. |++.+.+++.|+|||
T Consensus 1 Mm~~~~~~l~~~~~~~~---~~~yll~G~e~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~t~slf 74 (140)
T 1jql_B 1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNT--DWNAIFSLCQAMSLF 74 (140)
T ss_dssp CEECCGGGHHHHHHHCC---CSEEEEESSCHHHHHHHHHHHHHHHHHT-TCCEEECCCCSTTC--CHHHHHHHHHCCCTT
T ss_pred CCCCCHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHHHHHHC-CCCHHEEEECCCCC--CHHHHHHHHHCCCCC
T ss_conf 98579999999987078---8579998580999999999999998757-96241002037899--999999997279976
Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHHHCCC
Q ss_conf 8823999847741--04578988988510565607999852654311356676543-11210146
Q gi|254780804|r 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAISC 142 (352)
Q Consensus 81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~-~~~~~v~~ 142 (352)
|++|+|+|+++.. .++..+.|.+|+.+|++++++|+.++++++.++.+++++.. +.+..++|
T Consensus 75 ~~~rlViv~~~~~~~~k~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~~~k~~k~~~k~g~vi~~ 139 (140)
T 1jql_B 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEC
T ss_conf 66585223266667653479999999847999769999955767077877999999959668857
No 3
>>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (D:212-343)
Probab=99.61 E-value=4.6e-15 Score=118.36 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 11146788876410236999999985311000145899999999999999983025689899998608999976899999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~ 295 (352)
+++|+|+||++.||..+++..+++++.+|++|..+++.|.++||.++.++... ++.+..++.+..+ +++.+.+.++
T Consensus 1 y~if~l~dai~~~d~~~al~~l~~l~~~g~~~~~il~~L~~~~r~l~~~k~~~--~~~~~~~~~~~~~--i~~~~~~~~~ 76 (132)
T 1jr3_D 1 FTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQS--AHTPLRALFDKHR--VWQNRRGMMG 76 (132)
T ss_dssp CCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCS--SSSCHHHHHHHHT--CCSSHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHCC--CCHHHHHHHH
T ss_conf 33899999998268799999999998779957999999999999999999874--4899999998859--9999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 99864998999999999999999953289-9989999999999999631
Q gi|254780804|r 296 ESLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 296 ~q~~~~s~~~l~~~l~~L~~~d~~~K~~~-~~~~~il~~~ll~l~~~a~ 343 (352)
+++++|+.+++.+++..|.++|..+|++. .++...++.+++++|+.+.
T Consensus 77 ~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~~le~~l~~l~~~~~ 125 (132)
T 1jr3_D 77 EALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPL 125 (132)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHH
T ss_conf 9997199999999999999999997179999999999999999957165
No 4
>>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (D:145-211)
Probab=99.21 E-value=1.9e-11 Score=94.38 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 135889887543025667567999996200123556899999975103444348888877531012
Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
+++.||.++++++|+.|+++|+++|++.+|+|+..+.+||+||++|+++ ++||.+||..+++++.
T Consensus 2 el~~wi~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~-~~It~edV~~~v~~~~ 66 (67)
T 1jr3_D 2 QLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPD-GKLTLPRVEQAVNDAA 66 (67)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCC
T ss_conf 9999999999985998886999999987158788999999999973678-8751678998860312
No 5
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:244-373)
Probab=99.02 E-value=5.6e-09 Score=78.05 Aligned_cols=116 Identities=10% Similarity=-0.036 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
+.++|+++++++.||..+++..++++...|.+|..++..|.++||.++.++.... +.. .+++.+...+
T Consensus 3 ~~~i~~l~~~i~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~----~~~--------~~~~~~~~~~ 70 (130)
T 1jr3_A 3 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA----ALG--------NDMAAIELRM 70 (130)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTT----CCC--------SGGGGTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH----HHC--------CCCHHHHHHH
T ss_conf 7789999999871899999999999998099999999999999999999982746----330--------4431089999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998649989999999999999999532899989999999999999631
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
.++++.|+.+.+.+++..|.+++..+|. +..+...++-+++++|+.+.
T Consensus 71 ~~~a~~~s~~~L~~~l~~l~~~~~~lk~-s~~~~~~lE~~likl~~~~~ 118 (130)
T 1jr3_A 71 RELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMTLLRALAFHP 118 (130)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTT-SSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC
T ss_conf 9999679999999999999999999630-89958999999999997388
No 6
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:178-243)
Probab=97.43 E-value=0.00046 Score=45.52 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...++..++++|++++++++..|+..++||++...|-|+....+. .++||.++|..+++.
T Consensus 3 ~~~i~~~L~~I~~~E~i~~~~~aL~~ia~~~~Gd~R~aln~Leq~~~~~--~~~it~~~v~~~~Gs 66 (66)
T 1jr3_A 3 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGT 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT--TTCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHCC
T ss_conf 5789999999999839998999999999831999999999999999817--853249999998489
No 7
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:186-250)
Probab=97.38 E-value=0.00053 Score=45.08 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...++..++++|++++++|++.+++..+||++...|-|+.+..+. .+.||.++|..+++.
T Consensus 2 ~~~i~~~L~~I~~~E~i~~~~~al~~Ia~~s~GdlR~aln~Leq~~~~~--~~~It~~~v~~~~Gt 65 (65)
T 1njg_A 2 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGT 65 (65)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT--TSSBCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCC
T ss_conf 8999999999988727998999999999976980999999999999808--998489999998681
No 8
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:161-225)
Probab=97.25 E-value=0.001 Score=43.13 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...++..++++|++++++++..+++.++||++.+.|-|+-++.. .+.||.++|.++++.
T Consensus 3 ~~~i~~rL~~I~~~E~i~~d~~al~~i~~~s~Gd~R~aln~Lq~~~~~---~~~It~~~v~~~~Gs 65 (65)
T 2chq_A 3 KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI---GEVVDADTIYQITAT 65 (65)
T ss_dssp HHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS---SSCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCHHHHHHHHCC
T ss_conf 377899999998852467880288979987278555899999999860---466659999976434
No 9
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:169-238)
Probab=97.19 E-value=0.0005 Score=45.28 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHH
Q ss_conf 200135889887543025667567999996200123556899999975103--444348888877531
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDIIC 211 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~--~~~~It~~dI~~~v~ 211 (352)
+..++...++..+.++|++++++++..|++.++||++...|-|+-+..++. +.+.||.++|.++++
T Consensus 2 ~~~~i~~~L~~I~~~E~i~~~~~al~~i~~~s~GD~R~aln~Lq~~~~~~~~~~~~~I~~~~v~~~~G 69 (70)
T 1sxj_C 2 PQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 69 (70)
T ss_dssp CHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CCCHHHHHCCCCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 63012210111001220247756777888760352889999999999854776533013999999985
No 10
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:169-233)
Probab=97.18 E-value=0.001 Score=43.26 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...+...++++|++++++|++.|++.++||++...|-|+-++.. .++||.++|.++++.
T Consensus 3 ~~~i~~~L~~I~~~E~i~~~~~al~~i~~~s~Gd~R~aln~Lq~~~~~---~~~it~~~v~~~~G~ 65 (65)
T 1iqp_A 3 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL---DKKITDENVFMVASR 65 (65)
T ss_dssp HHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CSEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCC
T ss_conf 789999999999984999999999999988299778999999999976---898789999998589
No 11
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:161-226)
Probab=97.18 E-value=0.0014 Score=42.32 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...++..+.++|++++++|++.|++.++||++...|-|+-++. ..+.||.++|.++++.
T Consensus 3 ~~~i~~~L~~I~~~E~i~~~~~al~~i~~~s~Gd~R~aln~Lq~~~~---~~~~it~~~v~~~~G~ 65 (66)
T 2chg_A 3 KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAA---IGEVVDADTIYQITAT 65 (66)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHC
T ss_conf 06679999988750133589999999999849989999999999998---1898789999999706
No 12
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:167-230)
Probab=97.04 E-value=0.0019 Score=41.36 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775310
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
..++...+++.++++|++++++++.+|++..+||++.+.|-|+-++.- .++||.++|..+++.
T Consensus 2 ~~~i~~~L~~I~~~E~i~~~~~al~~i~~~s~Gd~R~aln~Lq~~~~~---~~~it~~~v~~~~g~ 64 (64)
T 1sxj_B 2 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG---HGLVNADNVFKIVDS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HSSBCHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCC
T ss_conf 302457775345666543117789999998289889999999999973---897679999988289
No 13
>>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:176-242)
Probab=96.43 E-value=0.011 Score=36.25 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf 135889887543025667567999996200123556899999975103-444348888877531
Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352)
Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352)
....++++.+...|+.+++++++||+..+..|.+.+...+.+|..|+. .+++||.+.+..++.
T Consensus 3 ~r~~IL~k~a~~~~i~i~~evi~yla~~~~~nir~Legal~~L~~~a~~~~~~Itl~lak~~Lk 66 (67)
T 3bos_A 3 EKLAALQRRAAXRGLQLPEDVGRFLLNRXARDLRTLFDVLDRLDKASXVHQRKLTIPFVKEXLR 66 (67)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 6678999999981999999999999996379999999999999999998589999999999867
No 14
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:1-166)
Probab=96.37 E-value=0.052 Score=31.87 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-----HHHHHCCHHHHHHHHHCCCCCCC
Q ss_conf 8875321001013847999569965899999999997335666773077620-----88964189999998717888888
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLN-----ALEIQKNISTFWNEINSTSLFSK 82 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~-----~~e~~~d~~~l~~~~~t~slF~~ 82 (352)
+.++..-++-... -+||||+.---+...+..+...+...... .+..... +.....+.......+...+..++
T Consensus 31 ~~L~~~i~~~~~~--~~ll~Gp~G~GKt~~a~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (166)
T 1sxj_B 31 DRLQQIAKDGNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYA-DGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGK 107 (166)
T ss_dssp HHHHHHHHSCCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHH-HHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTC
T ss_pred HHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999779998--69988949998999999999986699765-55431212035785026888876410012455651
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 23999847741-045789889885105656079998526543
Q gi|254780804|r 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 83 ~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
.++|+++++.. .......+...++.|+.++.+|+.+....+
T Consensus 108 ~~viiide~d~~~~~~~n~llk~lEe~~~~~~~Il~tn~~~~ 149 (166)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (166)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf 389998313333103678876203456543122012464230
No 15
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:193-254)
Probab=96.27 E-value=0.0025 Score=40.62 Aligned_cols=59 Identities=5% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 2001358898875430256675679-999962001235568999999751034443488888
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAK-QILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~-~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI 206 (352)
+..++...++..++++|++++++|+ +.++..++||++...+-||.++.+. .+.||.++|
T Consensus 2 s~~~i~~~L~~I~~~E~i~~~~~al~~~Ia~~s~GdlR~Al~~Le~~~~~~--~~~it~~~v 61 (62)
T 1sxj_E 2 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN--ELALKSSSP 61 (62)
T ss_dssp CHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT--TTEECSSCC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCHHHHHH
T ss_conf 137899999999987178868678999999872990879999999999739--951777887
No 16
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:192-255)
Probab=96.19 E-value=0.0025 Score=40.64 Aligned_cols=60 Identities=12% Similarity=-0.039 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 001358898875430256675679999962001235568999999751034443488888775
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~ 209 (352)
..++...+...++++|++++++|+..+++.++||++...|-|+-++... ++||.++|..+
T Consensus 3 ~~~i~~~L~~I~~~Egi~~d~~al~~i~~~s~Gd~R~aln~Lq~~~~~~---~~it~~~v~~~ 62 (64)
T 1sxj_D 3 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGA---QYLGDGKNITS 62 (64)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHH---HHHCSCCCCCH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHCCHHHHHHHHC---CCCCCCCCCHH
T ss_conf 1167888777665103567731233344321356200203999998636---34232233308
No 17
>>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-140)
Probab=96.07 E-value=0.1 Score=29.94 Aligned_cols=115 Identities=7% Similarity=0.084 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH---HHCCHHHHHHHHHCCCCCCCC
Q ss_conf 78875321001013847999569965899999999997335666773077620889---641899999987178888882
Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSLFSKK 83 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e---~~~d~~~l~~~~~t~slF~~~ 83 (352)
.+.++..-++-.. .-+||||+.---+...+..+.+....+....-......... ...+...+...+...+.-+.+
T Consensus 6 ~~~l~~~i~~~~~--~~iLl~GppG~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 2gno_A 6 LETLKRIIEKSEG--ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTR 83 (140)
T ss_dssp HHHHHHHHHTCSS--EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSS
T ss_pred HHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999967998--65988898998879999999998734467799889973876779989999999998526535895
Q ss_pred EEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 39998477410-45789889885105656079998526543
Q gi|254780804|r 84 KIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 84 klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
++++++++... ......+...++.+++++++|+.+.....
T Consensus 84 ~viiidEid~~~~~~~~~ll~~~e~~~~~~~~i~~tn~~~~ 124 (140)
T 2gno_A 84 KYVIVHDCERXTQQAANAFLKALEEPPEYAVIVLNTRRWHY 124 (140)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred EEEEEECHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 69998566766986799999987047886256764220432
No 18
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:263-440)
Probab=96.02 E-value=0.019 Score=34.79 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCCCC-------CC
Q ss_conf 200135889887543025667567999996200123556899999975103-4443488888775310122-------11
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIICDTHV-------LY 217 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~~~~~-------~~ 217 (352)
+.......++..+...|+.+++++++++++.+++|.+.+...+.+|..|+. .+.+|+.+.+..++..... .+
T Consensus 2 d~etr~~Il~~k~~~~~i~i~~evl~~iA~~~~~~vR~legal~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 81 (178)
T 2z4s_A 2 DEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIKPNRVKAMDP 81 (178)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTTCC--------
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 37789999999988601479788999998760532899999999999999972888857777898776763044445661
Q ss_pred HHHHHHHHHHH
Q ss_conf 14678887641
Q gi|254780804|r 218 IEEIINATIQG 228 (352)
Q Consensus 218 if~L~dai~~~ 228 (352)
+.++++++...
T Consensus 82 ~~~Ii~~Va~~ 92 (178)
T 2z4s_A 82 IDELIEIVAKV 92 (178)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
T ss_conf 98999999999
No 19
>>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (A:209-261)
Probab=95.79 E-value=0.015 Score=35.56 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 20013588988754302566756799999620012355689999997510
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~ 195 (352)
+..++...+...++++|++++++++..|++.++||++...|-|+-++.+.
T Consensus 2 s~~~i~~~L~~I~~~E~i~~~~~~l~~Ia~~s~GdiR~ain~Lq~~~~~~ 51 (53)
T 1sxj_A 2 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTT 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 98999999999998628988789999988712898999999999999648
No 20
>>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} (A:1-185)
Probab=95.74 E-value=0.14 Score=29.03 Aligned_cols=115 Identities=8% Similarity=0.108 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC--------------------CEEEEEEHHHHHCCH
Q ss_conf 887532100101384799956996589999999999733566677--------------------307762088964189
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDP--------------------FSLVVLNALEIQKNI 67 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~--------------------~~~~~~~~~e~~~d~ 67 (352)
+-++..-.+....| .|||||+.---+...+..+.+.+..+.... .............+.
T Consensus 33 ~~l~~~i~~~~~~~-~lLl~GppG~GKt~la~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (185)
T 1njg_A 33 TALANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT 111 (185)
T ss_dssp HHHHHHHHHTCCCS-EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHH
T ss_pred HHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHCCCHHHH
T ss_conf 99999998599870-69888999876899999999984685466667666545899997489861899520420799999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 99999871788888823999847741-045789889885105656079998526543
Q gi|254780804|r 68 STFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 68 ~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
..+.+.+...+.-+..+++++.++.. .......+...++.|+.++++|+.+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~v~~~~e~~~~~~~~~~~ll~~~e~~~~~~~~I~ttn~~~~ 168 (185)
T 1njg_A 112 RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (185)
T ss_dssp HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHH
T ss_conf 999999974651489779999780529999999999997667888379996698444
No 21
>>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (B:197-282,B:358-384)
Probab=94.53 E-value=0.16 Score=28.66 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 2001358898875430256--67567999996200---123556899999975103444348888877531012211146
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKS--ISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~--i~~~a~~~L~~~~g---~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~ 220 (352)
+..++...++.++...... ++++|+++++..+. ||.+..-+-+.+-.-.+-+.+.|+.++|...+.......+-+
T Consensus 2 t~~eL~~IL~~Rl~~~~~~~vv~~~AL~llA~kvA~~sGDaR~ALdilr~A~eiAe~~~~Vt~~~V~~A~~~~~~~~~~~ 81 (113)
T 2qby_B 2 DAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIE 81 (113)
T ss_dssp CHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999998732436677789999999987505670657999999999850489878999999984201103678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78887641023699999998531
Q gi|254780804|r 221 IINATIQGKIYNAIMLADFFLAS 243 (352)
Q Consensus 221 L~dai~~~~~~~a~~~l~~l~~~ 243 (352)
.+. .-..+.+..+++-+..
T Consensus 82 ~I~----~L~~~~~~~~~~~~~~ 100 (113)
T 2qby_B 82 AVK----ALKEKVLRALNETFED 100 (113)
T ss_dssp HHH----SSSHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHH
T ss_conf 877----7699999999999877
No 22
>>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} (A:1-177)
Probab=94.17 E-value=0.38 Score=26.20 Aligned_cols=113 Identities=8% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC--------------------CCEEEEEEHHHHHCCHHH
Q ss_conf 753210010138479995699658999999999973356667--------------------730776208896418999
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--------------------PFSLVVLNALEIQKNIST 69 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~--------------------~~~~~~~~~~e~~~d~~~ 69 (352)
++..-.+....| -+||||+.---+...++.+.+.+..+... .+......+.........
T Consensus 28 l~~~i~~~~~~~-~~Ll~GppG~GKT~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (177)
T 1jr3_A 28 LANGLSLGRIHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD 106 (177)
T ss_dssp HHHHHHHTCCCS-EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHH
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCHHCCCHHHHHH
T ss_conf 999998699772-3765799998799999999999678788876877521689999758987279853120188999999
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 9998717888888239998477410-45789889885105656079998526543
Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
+.+.+...+..+.++++++.++... ......+...++.++.++++|+.+...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~e~~~~~~~~~n~ll~~~e~~~~~~~~I~~tN~~~~ 161 (177)
T 1jr3_A 107 LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (177)
T ss_dssp HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH
T ss_conf 9999852654799869998684649999999999998579867289885587464
No 23
>>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} (A:201-288,A:369-387)
Probab=93.85 E-value=0.18 Score=28.25 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 2001358898875430256--67567999996200---123556899999975103--4443488888775310122111
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKS--ISKEAKQILLANLG---GDRIASRNELQKLSSYCL--EDILITEQHVKDIICDTHVLYI 218 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~--i~~~a~~~L~~~~g---~d~~~l~~EleKL~ly~~--~~~~It~~dI~~~v~~~~~~~i 218 (352)
+..++...++.++...+.. ++++|+++++..+. ||.+...+-+.+-.-++. +.+.||.++|...+.......+
T Consensus 2 t~~eL~~IL~~R~~~~~~~~~i~~~AL~l~A~~va~~sGDaR~AL~llrrA~eiAe~e~~~~Vt~e~v~~A~~~~~~~~~ 81 (107)
T 2v1u_A 2 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRV 81 (107)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999844656789999999999866326767999999999999999807999899999999998753044
Q ss_pred HHHHHH
Q ss_conf 467888
Q gi|254780804|r 219 EEIINA 224 (352)
Q Consensus 219 f~L~da 224 (352)
-+-++.
T Consensus 82 ~~~L~~ 87 (107)
T 2v1u_A 82 SEVVRT 87 (107)
T ss_dssp HHHHHS
T ss_pred HHHHCC
T ss_conf 443112
No 24
>>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (E:1-192)
Probab=93.58 E-value=0.48 Score=25.50 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=63.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCC-----------------------EEEEEEHH-H-------------HHC
Q ss_conf 7999569965899999999997335666773-----------------------07762088-9-------------641
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPF-----------------------SLVVLNAL-E-------------IQK 65 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~-----------------------~~~~~~~~-e-------------~~~ 65 (352)
.+||||+.---+...+..+.+.+..+..... ........ . ...
T Consensus 38 ~lLl~Gp~G~GKt~~A~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (192)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (192)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEHHHCCCCCCCEEEEHHHHHH
T ss_conf 69888979998999999999986598632123442222355541333212468870465010134677631200122232
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 8999999871788888823999847741-045789889885105656079998526543
Q gi|254780804|r 66 NISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 66 d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
....+.+.....+..+..++++++++.. .......+...++.|+.++++|+.+....+
T Consensus 118 ~i~~~~~~~~~~~~~~~~~v~~i~e~~~~~~~~~n~llk~le~~~~~~~fIl~tn~~~~ 176 (192)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (192)
T ss_dssp TTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCC
T ss_conf 22100012114655677418987323335511455665411224222320133001113
No 25
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:1-168)
Probab=93.52 E-value=0.49 Score=25.43 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE----EHHHHHCCHHHHHHHHHCCCCCCCCE
Q ss_conf 87532100101384799956996589999999999733566677307762----08896418999999871788888823
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL----NALEIQKNISTFWNEINSTSLFSKKK 84 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~----~~~e~~~d~~~l~~~~~t~slF~~~k 84 (352)
.++..-++-...| .||||+..--+...+..+.+.+............. ...+. .....+.......+..++.+
T Consensus 36 ~l~~~i~~~~~~~--~ll~GppG~GKt~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 112 (168)
T 1sxj_C 36 TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDV-VRNQIKDFASTRQIFSKGFK 112 (168)
T ss_dssp HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHH-HHTHHHHHHHBCCSSSCSCE
T ss_pred HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHHHHHCCCCCEE
T ss_conf 9999997799986--99889799999999999998740456677436731444686011-02455542000001445527
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 999847741-045789889885105656079998526543
Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
+++++++.. .......+...++.++.++++|+.......
T Consensus 113 viiide~d~~~~~~~~~ll~~le~~~~~~~~I~~tn~~~~ 152 (168)
T 1sxj_C 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 152 (168)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCC
T ss_conf 9840157777887899999998743500121022464101
No 26
>>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} (A:366-438)
Probab=93.38 E-value=0.24 Score=27.44 Aligned_cols=65 Identities=20% Similarity=0.038 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHH
Q ss_conf 2001358898875430256675679999962001-23556899999--97510344434888887753
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQK--LSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-d~~~l~~EleK--L~ly~~~~~~It~~dI~~~v 210 (352)
+..++.+.++-+++.+|+.++++|+++|.+.-.. .++...|=|.- +..-..++..|+.+||+.+-
T Consensus 2 ~~~Ei~~Il~iRa~~E~i~l~~~Al~~L~~ig~~tSLRYaiqLLtpa~ilA~~~g~~~V~~~Dv~~~~ 69 (73)
T 2c9o_A 2 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 69 (73)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999999999958984889999999987068699998789999999865389853799999999
No 27
>>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} (A:215-300)
Probab=92.58 E-value=0.49 Score=25.46 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCC
Q ss_conf 2001358898875430256--67567999996200------12355689999997510--3444348888877531012
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKS--ISKEAKQILLANLG------GDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTH 214 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~--i~~~a~~~L~~~~g------~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~~ 214 (352)
+..++...+..++...+.. ++++++++++..++ ||.+...+-|..-...+ .+.+.|+.+||...+....
T Consensus 2 ~~~el~~Il~~R~~~~~~~~~~~~~al~~~a~~~a~~~~~~GDaR~Al~ll~~A~~~Ae~~~~~~V~~~dV~~a~~~~~ 80 (86)
T 1w5s_A 2 KSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 80 (86)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999999863023467989999999985254665313689999999999999981898878999999999987
No 28
>>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} (A:197-284,A:367-386)
Probab=92.03 E-value=0.49 Score=25.45 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCC
Q ss_conf 001358898875430256--67567999996200---12355689999997510--34443488888775310122
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKS--ISKEAKQILLANLG---GDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTHV 215 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~--i~~~a~~~L~~~~g---~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~~~ 215 (352)
..++...+..+++..+.. ++++|++++++.+. ||.+...+-+..-.-++ .+.++||.++|.+.......
T Consensus 3 ~~EL~~IL~~R~~~~~~~~v~~~~aL~lla~~va~~sGD~R~AL~lLr~A~~iAe~~~~~~It~e~V~~A~~~~~~ 78 (108)
T 2qby_A 3 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 78 (108)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999723677889899999999876515557778789999999999827998889999999864300
No 29
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:256-353)
Probab=91.41 E-value=0.9 Score=23.68 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=71.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 87753101221114678887641023699999998531100014589999999999999998302568989999860899
Q gi|254780804|r 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 (352)
Q Consensus 206 I~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p 285 (352)
|.++.+......+.++++++..|+..++...++++...|.++..|+..+.+.+. .....
T Consensus 1 V~~v~g~p~p~~i~~il~~~~~~~~~~a~~~i~~li~~G~s~~dii~~l~~~i~---------~~~~~------------ 59 (98)
T 1sxj_D 1 VEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI---------TNDNF------------ 59 (98)
T ss_dssp HHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH---------HCSSS------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHCCC------------
T ss_conf 877640478889999998765479999999999999859999999999999998---------74669------------
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9976899999998649989999999999999999532899989999999999999
Q gi|254780804|r 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 286 ~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
+...-.+++..+.++|..+-. |.++..-+..++..+++
T Consensus 60 ----------------~~~~k~~il~~la~~e~rl~~-G~~e~lQl~~l~~~i~~ 97 (98)
T 1sxj_D 60 ----------------DTNFKNQISWLLFTTDSRLNN-GTNEHIQLLNLLVKISQ 97 (98)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHC
T ss_conf ----------------989999999999999999984-79989999999999826
No 30
>>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} (B:)
Probab=91.14 E-value=0.75 Score=24.22 Aligned_cols=63 Identities=13% Similarity=-0.074 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 58898875430256-67567999996200123556899999975103444348888877531012
Q gi|254780804|r 151 MDLIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 151 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
..-|+..++..|.. |+.++...|.+.+..-...+.++..+++-++ +.++|+.+||...+-...
T Consensus 31 ~~~I~ria~~~G~~ris~~a~~~l~~~~e~~~~~i~~da~~~~~ha-kRkti~~~DV~~alkr~~ 94 (102)
T 1id3_B 31 KPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHCC
T ss_conf 6999999998385761499999999999999999999999999954-974228999999999869
No 31
>>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} (A:1-166)
Probab=90.92 E-value=1 Score=23.37 Aligned_cols=115 Identities=7% Similarity=0.020 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC--------------------CCCEEEEEEHHH---HH
Q ss_conf 8875321001013847999569965899999999997335666--------------------773077620889---64
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH--------------------DPFSLVVLNALE---IQ 64 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~--------------------~~~~~~~~~~~e---~~ 64 (352)
+.++..-++....| .|||||+.-.-+...++.+.+.+..+.. ............ ..
T Consensus 12 ~~L~~~~~~~~~~~-~iLl~GppGtGKt~lA~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (166)
T 1a5t_A 12 EKLVASYQAGRGHH-ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGV 90 (166)
T ss_dssp HHHHHHHHTTCCCS-EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCH
T ss_pred HHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHH
T ss_conf 99999998599672-58468999977999999999997087998888887768999998047730125555541021116
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 189999998717888888239998477410-45789889885105656079998526543
Q gi|254780804|r 65 KNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 65 ~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
.....+.+.+...+..+..+++++.++... ......+....+.++.++++|+.+...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~I~~TN~~~~ 150 (166)
T 1a5t_A 91 DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (166)
T ss_dssp HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred HHHHHHHHHHHHHCCCCCHHEEEECHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf 777888775443101121001461345303310002345667502444402210487665
No 32
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:1-168)
Probab=90.60 E-value=1.1 Score=23.18 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=65.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE---EHHHHHCCHHHHHHHHHCCCCC-CCCEEEEEECCCC-HHH
Q ss_conf 4799956996589999999999733566677307762---0889641899999987178888-8823999847741-045
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL---NALEIQKNISTFWNEINSTSLF-SKKKIILIENLST-EKK 96 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~---~~~e~~~d~~~l~~~~~t~slF-~~~klIii~~~~~-~k~ 96 (352)
+-+||||+..--+...+..+.+....+... .+...+ +......-.........+.... +..+++++.++.. .+.
T Consensus 47 ~~~Ll~GppG~GKT~~a~~ia~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~ 125 (168)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWR-HNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 125 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHH-HHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH
T ss_conf 879888979999999999999997640247-7721443545565489999999988621136876479998673301165
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 789889885105656079998526543
Q gi|254780804|r 97 VLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 97 ~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
....+...++.++.++++|+.+.....
T Consensus 126 ~~n~ll~~lee~~~~~~~i~ttn~~~~ 152 (168)
T 1iqp_A 126 AQQALRRTMEMFSSNVRFILSCNYSSK 152 (168)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 799999988505775388861587221
No 33
>>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding protein; 1.70A {Xenopus laevis} (C:)
Probab=90.45 E-value=0.96 Score=23.49 Aligned_cols=64 Identities=11% Similarity=-0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 58898875430256-675679999962001235568999999751034443488888775310122
Q gi|254780804|r 151 MDLIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 (352)
Q Consensus 151 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~ 215 (352)
..-|+..++..|.. ++.+|...|.+.+..=...+.++..+.+-.+ ++++|+.+||...+-...+
T Consensus 13 ~a~I~ri~k~~g~~~is~ea~~~l~~~~e~fi~~i~~~a~~~~~ha-kRkTi~~~DV~~Alk~~~~ 77 (84)
T 2hue_C 13 KPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHCCC
T ss_conf 8999999997793302799999999999999999999999987661-8876779999999985698
No 34
>>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} (D:)
Probab=89.57 E-value=1.2 Score=22.80 Aligned_cols=63 Identities=11% Similarity=-0.121 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 58898875430256-67567999996200123556899999975103444348888877531012
Q gi|254780804|r 151 MDLIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 151 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
..-|+..++..|.. |+.+|...|.+.+..=...+.++..+++... ++++|+.+||...+-...
T Consensus 32 ~~~i~ri~k~~~~~~is~da~~~l~~~~e~fi~~i~~~A~~~a~h~-kRkTi~~~DI~~Alk~~g 95 (103)
T 1tzy_D 32 KPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHCC
T ss_conf 8999999997587646199999999999999999999999985152-365377999999999669
No 35
>>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} (M:)
Probab=88.73 E-value=1.3 Score=22.53 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHH
Q ss_conf 2001358898875430256675679999962001-2355689999997510344----4348888877531
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKLSSYCLED----ILITEQHVKDIIC 211 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-d~~~l~~EleKL~ly~~~~----~~It~~dI~~~v~ 211 (352)
+...++.+|...|+-+|+.|.++|..||++.+.+ +-.....-|+|+.-...+. ..|+.+.|+..|.
T Consensus 26 ~~~~LRk~IvsaFkL~Gl~Lr~EAs~YL~e~L~~~~~~Er~~wL~kIie~VqkQ~Lss~~Ier~~iE~AVk 96 (99)
T 2v6z_M 26 APERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQ 96 (99)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCCSSSEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 88999999998861200035388999999980789888999999999999974999810403999999998
No 36
>>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} (A:193-281)
Probab=87.58 E-value=1.7 Score=21.78 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCC
Q ss_conf 00135889887543025--667567999996200---------12355689999997510--344434888887753101
Q gi|254780804|r 147 KIHLMDLIEESLLIGQK--SISKEAKQILLANLG---------GDRIASRNELQKLSSYC--LEDILITEQHVKDIICDT 213 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~--~i~~~a~~~L~~~~g---------~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~ 213 (352)
..++...+..+++.... .++++++++++..+. +|.+...+-|..=...+ -+.+.|+.+||...+...
T Consensus 3 ~~el~~IL~~R~~~~~~~~~~~~~al~~~a~~~a~~~~~~~~~GD~R~Al~ll~~A~~~A~~~~~~~V~~~~V~~a~~~~ 82 (89)
T 1fnn_A 3 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 82 (89)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999999997346566768999998899999999985799999999999999999997057987899999999987
Q ss_pred C
Q ss_conf 2
Q gi|254780804|r 214 H 214 (352)
Q Consensus 214 ~ 214 (352)
.
T Consensus 83 ~ 83 (89)
T 1fnn_A 83 L 83 (89)
T ss_dssp S
T ss_pred H
T ss_conf 5
No 37
>>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} (B:)
Probab=87.01 E-value=1.9 Score=21.57 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 889887543025-66756799999620012355689999997510344434888887753
Q gi|254780804|r 152 DLIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 152 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352)
.-|+..+...|+ +++++++..|++-+..-...+.||--|..-- +.++++|.+||+..+
T Consensus 10 esik~iAeS~Gi~~l~de~a~~LA~DVeyRi~eiiQeA~KFMrh-skR~~Ltt~Di~~AL 68 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH-AKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH
T ss_conf 89999999859888899999998999999999999999999997-466768799999887
No 38
>>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} (A:1-127)
Probab=86.03 E-value=0.96 Score=23.51 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHCC------CCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434888887753101------221114----67888764102369999999853110001458999999999999999
Q gi|254780804|r 197 EDILITEQHVKDIICDT------HVLYIE----EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 (352)
Q Consensus 197 ~~~~It~~dI~~~v~~~------~~~~if----~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~ 266 (352)
+...||.++|..++... ...+.+ .|..++-.+|...|+.++.+++..|++|..| +|+|..+..
T Consensus 8 ~~~~it~~~~~~~~~~~~~~~dk~gd~hYd~iSAl~KSIRgSD~dAAly~larll~~Gedp~~i-------~RRL~~iAs 80 (127)
T 3ctd_A 8 NLVVIDLAIAEDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFI-------FRRLLISAC 80 (127)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHH-------HHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHH
T ss_conf 9578529999999865251105783089999999999864489658999999999748857899-------999999997
No 39
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:178-253)
Probab=85.00 E-value=2.1 Score=21.19 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 5889887543025---66756799999620-012355689999997510344434888887753101
Q gi|254780804|r 151 MDLIEESLLIGQK---SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 151 ~~~i~~~~~~~g~---~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
..++.+...+.|. .++++|++.|.... .||.+.+.|-++.+.+.+.+ +.|+.+|+...+..+
T Consensus 10 ~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~~v~~~~~~~~~-~~i~~~~l~~~~~~~ 75 (76)
T 1ojl_A 10 DHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTG-EYISERELPLAIAAT 75 (76)
T ss_dssp HHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCS-SSBCGGGSCGGGC--
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHHCC
T ss_conf 999999775016654322999999998377898699999999999975788-837778777434048
No 40
>>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:313-387)
Probab=82.59 E-value=2.9 Score=20.28 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 889887543025---66756799999620-0123556899999975103444348888877531
Q gi|254780804|r 152 DLIEESLLIGQK---SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 152 ~~i~~~~~~~g~---~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
.++.+...+.|. .++++|++.|.... .||.+.+.+-++.+++.+.+ ..|+.+++...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNirEL~~~i~~~~~~~~~-~~I~~~~l~~~l~ 73 (75)
T 1ny5_A 11 HFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG-KFIDRGELSCLVN 73 (75)
T ss_dssp HHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS-SEECHHHHHHHC-
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CEECHHHHHHHHC
T ss_conf 99999999749999997999999997089997999999999999994898-8548898318556
No 41
>>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} (A:168-247)
Probab=82.55 E-value=3 Score=20.27 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH
Q ss_conf 0013588988754302566756799999620012355689999997510--3444348888877531
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352)
..++...|...++..|+.|+++++..++.++-+-.+...+=|...-=|+ .+.+.|+.+.+...+.
T Consensus 3 ~eeL~~Ii~rsa~~l~i~i~~~a~~eIA~rSRGTPRIAnrLLkRvrDfa~v~~~~~I~~~~~~~aL~ 69 (80)
T 1hqc_A 3 PEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 69 (80)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999999999999859975689999999864899999999999999985541689648999999998
No 42
>>1b67_A Protein (histone HMFA); 1.48A {Methanothermus fervidus} (A:)
Probab=81.29 E-value=3.3 Score=19.97 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 889887543025-6675679999962001235568999999751034443488888775310
Q gi|254780804|r 152 DLIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 152 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
.-|+..++..|. +|+.++...+.+.+..-...+.++..+.+-+. ++++|+.+||...+-.
T Consensus 6 a~I~ri~k~~~~~~is~da~~~l~~~~~~fi~~i~~~a~~~~~~~-kRKTI~~~DI~~al~~ 66 (68)
T 1b67_A 6 APIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA-GRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHGGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHH
T ss_conf 799999857765103599999999999999999999999999991-9872789999999986
No 43
>>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} (A:)
Probab=79.89 E-value=3.6 Score=19.67 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 889887543025-66756799999620012355689999997510344434888887753
Q gi|254780804|r 152 DLIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 152 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352)
.-|+..+++.|. +|+.+|...|.+.+..=...+.++..+.+.+ .++++|+.+||...+
T Consensus 10 ~~i~rl~r~~~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~h-~kRkTI~~~Di~~Al 68 (70)
T 1ku5_A 10 APVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH-AGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH
T ss_conf 89999998846343479999999999999999999999999998-188835899999997
No 44
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:180-254)
Probab=78.87 E-value=3.9 Score=19.46 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH
Q ss_conf 0013588988754302566756799999620012355689999997510--3444348888877531
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352)
..++...|...+...|++|+.+++..++.++-|-.+...+=|...-=|+ .+.+.|+.+.+...+.
T Consensus 3 ~eeL~~Ii~rsa~~L~i~i~~~aa~eIA~RSRGTPRIAnrLLrRVRDfA~v~~~~~I~~~~~~~aL~ 69 (75)
T 1in4_A 3 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 69 (75)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8999999998876532346789999999864786999999999999986430268758999999998
No 45
>>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (C:239-340)
Probab=77.13 E-value=4.2 Score=19.23 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1114678887641023699999998-531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l-~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
..+.++++++..|+..++...++.+ ..+|.++..|+..+.+... .....
T Consensus 4 ~~I~~il~~~~~~~~~~a~~~v~~l~~~~G~s~~dIl~~l~~~v~---------~~~~~--------------------- 53 (102)
T 1sxj_C 4 SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE---------DYELQ--------------------- 53 (102)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---------TSCCS---------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHCCC---------------------
T ss_conf 999999998763899999999999998469999999999999999---------84789---------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999864998999999999999999953289998999999999999963
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352)
+...-.+++..|.++|..+-. |.++..-+..++..++...
T Consensus 54 -------~~~~k~~il~~lae~d~rL~~-Ga~e~lQL~~l~~~~~~~~ 93 (102)
T 1sxj_C 54 -------NEETRVHLLTKLADIEYSISK-GGNDQIQGSAVIGAIKASF 93 (102)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_conf -------989999999999999999983-8988899999999999999
No 46
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:226-319)
Probab=77.03 E-value=4.4 Score=19.12 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1114678887641023699999998-531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l-~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
..+.++++++..|+..++...++++ ...|.++..|+..+.+.... ..
T Consensus 4 ~~I~~il~~~~~~~~~~a~~~i~~l~~~~G~s~~dil~~l~~~v~~----------~~---------------------- 51 (94)
T 2chq_A 4 EEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIIS----------MP---------------------- 51 (94)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT----------SC----------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----------CC----------------------
T ss_conf 5678899987427888889999999997499999999999999985----------57----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998649989999999999999999532899989999999999999631
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
++...-.+++..+.++|..+-. |.++..-+..++..++....
T Consensus 52 ------~~~~~k~~il~~la~~d~rL~~-G~~e~lQL~~l~~~~~~~~~ 93 (94)
T 2chq_A 52 ------IKDSLKVQLIDKLGEVDFRLTE-GANERIQLDAYLAYLSTLAK 93 (94)
T ss_dssp ------SCTTHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTC
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHC
T ss_conf ------9989999999999999999986-79989999999999999748
No 47
>>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} (A:234-327)
Probab=74.96 E-value=5 Score=18.76 Aligned_cols=89 Identities=10% Similarity=-0.052 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1114678887641023699999998-531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l-~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
..+.++++.+..|+..++...++++ ...|.++..|+..+.+... ...
T Consensus 4 ~~I~~il~~~~~~~f~~a~~~i~~l~~~~G~s~~dIl~~l~~~v~----------~~d---------------------- 51 (94)
T 1iqp_A 4 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVF----------NLP---------------------- 51 (94)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGG----------GSS----------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------CCC----------------------
T ss_conf 999999999974899999999999999869999999999999997----------679----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998649989999999999999999532899989999999999999631
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
++.....+++..+.++|..+-. |.++..-+..++..++....
T Consensus 52 ------~~~~~k~~il~~lae~d~rL~~-G~~e~lQL~~l~~~~~~~~~ 93 (94)
T 1iqp_A 52 ------IEEPKKVLLADKIGEYNFRLVE-GANEIIQLEALLAQFTLIGK 93 (94)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHC
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHC
T ss_conf ------9989999999999999999986-69989999999999998538
No 48
>>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* (A:182-265)
Probab=71.67 E-value=4.6 Score=18.98 Aligned_cols=61 Identities=8% Similarity=-0.105 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCC----CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 889887543025----66756799999620-012355689999997510344434888887753101
Q gi|254780804|r 152 DLIEESLLIGQK----SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 152 ~~i~~~~~~~g~----~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
.++.+...+.|. .++++|.+.|..+. .||.+.+.|-++...+.+.+ ..|+.+|+...+...
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~a~~~L~~y~WPGNiREL~~~i~r~~~~~~~-~~I~~~~l~~~~~~~ 76 (84)
T 2bjv_A 11 YFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT-SDYPLDDIIIDPFKR 76 (84)
T ss_dssp HHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCC-SSSCBCCCCSCTTC-
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHCCCCCCCC
T ss_conf 999999987376520000599999998389997899999999999995799-964899848570004
No 49
>>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} (A:1-85)
Probab=66.27 E-value=6.1 Score=18.20 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Q ss_conf 114678887641023699999998531100014589-9999999
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH-GFLQKFQ 259 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~-~L~~~f~ 259 (352)
-.-.+.+++..|+...+.......+..|.+|..|+. .|..-..
T Consensus 5 ~~~~l~~ai~~g~~~~v~~~v~~~L~~g~~p~~ii~~~L~~gM~ 48 (85)
T 3ezx_A 5 IFDKLRDAIVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMK 48 (85)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999982748789999999998699989999999999999
No 50
>>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:1-94)
Probab=65.47 E-value=7.4 Score=17.61 Aligned_cols=46 Identities=2% Similarity=-0.096 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHH
Q ss_conf 1221114678887641023699999998531100014589-999999
Q gi|254780804|r 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH-GFLQKF 258 (352)
Q Consensus 213 ~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~-~L~~~f 258 (352)
..+...-.+.+++..|+...+.......+..|.+|..|+. .|..-.
T Consensus 7 ~~~~~~~~l~~ai~~g~~e~v~~~v~~aL~~g~~p~~Ii~~~L~~gM 53 (94)
T 3bul_A 7 RSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPCEVIEGPLMDGM 53 (94)
T ss_dssp GGSCHHHHHHHHHHHTCCTTHHHHHHHHHHHSSSTTHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 15998999999998076777999999999759988999998899999
No 51
>>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:20-118)
Probab=62.66 E-value=8.3 Score=17.28 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Q ss_conf 1221114678887641023699999998531100014589-9999999
Q gi|254780804|r 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH-GFLQKFQ 259 (352)
Q Consensus 213 ~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~-~L~~~f~ 259 (352)
+...-.-.+.+++..|+...+....+.++..|.+|..|+. .|..-..
T Consensus 16 ~~~~~~~~l~~ai~~G~~~~v~~~v~~aL~~g~~p~~Ii~~~L~~gM~ 63 (99)
T 2i2x_B 16 PKDELIYPIAKAIFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMG 63 (99)
T ss_dssp CCCTTSHHHHHHHHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 771899999999994868889999999998599989999998999999
No 52
>>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} (A:)
Probab=51.27 E-value=14 Score=15.86 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 001358898875430256-675679999962001235568999999751034
Q gi|254780804|r 147 KIHLMDLIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 (352)
Q Consensus 147 ~~~l~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~ 197 (352)
...+..-+.+..+++|++ +++++..++...+.. .+.+-++||+..+..
T Consensus 5 ~~~Lq~ki~~I~~k~gl~~i~~Dv~~~iS~A~qe---RLr~Llekl~~~s~h 53 (75)
T 1h3o_A 5 QAPLQRRILEIGKKHGITELHPDVVSYVSHATQQ---RLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHH---HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 1379999999876528651271699998799999---999999999999987
No 53
>>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specificity, signaling, protein binding; NMR {Caenorhabditis elegans} (A:)
Probab=44.09 E-value=18 Score=15.14 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 76410236999999985311000145899999
Q gi|254780804|r 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 (352)
Q Consensus 225 i~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~ 256 (352)
-+.+|+.+|++.++.+...|+=|..=|.+|.+
T Consensus 4 ~L~rDv~RaiELlekLq~sgevp~~KL~aLqk 35 (53)
T 1zl8_A 4 NLERDVQRILELMEHVQKTGEVNNAKLASLQQ 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 18877989999999998869998699999999
No 54
>>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprotein, polymorphism, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:)
Probab=44.04 E-value=18 Score=15.13 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHH
Q ss_conf 58898875430256675679999962001235568999999751034--44348888877531
Q gi|254780804|r 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE--DILITEQHVKDIIC 211 (352)
Q Consensus 151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~--~~~It~~dI~~~v~ 211 (352)
..-|++.|+..|+.++++.++.+++.+-.-......-++....|+.. ...+|.+.++.+-.
T Consensus 28 ~eeL~eEF~~fGi~~dd~VleKl~ELC~~y~ldaeelV~eW~AFs~s~~~~~~TvenL~~FE~ 90 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEH 90 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 999999999829988889999999999883998999999999998616999988899999999
No 55
>>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (B:231-323)
Probab=41.42 E-value=19 Score=14.87 Aligned_cols=89 Identities=7% Similarity=-0.069 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 14678887641023699999998-53110001458999999999999999830256898999986089999768999999
Q gi|254780804|r 218 IEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 (352)
Q Consensus 218 if~L~dai~~~~~~~a~~~l~~l-~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~ 296 (352)
+-++.+.+..|+..+|.+.++.+ ...|.++..|+..+.+.... ..
T Consensus 3 P~~I~~~l~~~~~~~a~~~i~~ll~~~G~s~~dIi~~l~~~v~~---------~~------------------------- 48 (93)
T 1sxj_B 3 PLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKN---------LA------------------------- 48 (93)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHT---------CT-------------------------
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------HH-------------------------
T ss_conf 77999999851539999999999998699999999999999998---------64-------------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 986499899999999999999995328999899999999999996310
Q gi|254780804|r 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 297 q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~ 344 (352)
.++...-.+++..+.++|..+-. |.++..-+..++..++....+
T Consensus 49 ---~~~~~~k~~ll~~lae~d~rL~~-G~~e~lQL~~l~~~~~~~~~~ 92 (93)
T 1sxj_B 49 ---QVKESVRLEMIKEIGLTHMRILE-GVGTYLQLASMLAKIHKLNNK 92 (93)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHTTC
T ss_pred ---HCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCC
T ss_conf ---38877899999999999999984-788799999999999998645
No 56
>>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A (A:303-368)
Probab=40.80 E-value=20 Score=14.81 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 889887543025---66756799999620-0123556899999975103444348
Q gi|254780804|r 152 DLIEESLLIGQK---SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILIT 202 (352)
Q Consensus 152 ~~i~~~~~~~g~---~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It 202 (352)
.++.....+.|. .++++|.+.|.... .||.+.+.|-++.+.+.+.+ ..||
T Consensus 12 ~~l~~~~~~~~~~~~~~s~~a~~~l~~y~WPGNiREL~n~i~r~~~~~~~-~~It 65 (66)
T 3dzd_A 12 YFLKKFAKEYKKNCFELSEETKEYLXKQEWKGNVRELKNLIERAVILCEG-EVIK 65 (66)
T ss_dssp HHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS-SBCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEC
T ss_conf 99999999839999984999999998289997899999999999983797-9558
No 57
>>1y74_A LIN 7 homolog B; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} (A:)
Probab=39.11 E-value=21 Score=14.64 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 64102369999999853110001458999999
Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 (352)
Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~ 257 (352)
+.+|..+|++.++.+...|+=|..=|.+|.+-
T Consensus 3 L~rDv~RaieLle~LQ~sgevp~~KL~aLqkV 34 (57)
T 1y74_A 3 LERDVSRAVELLERLQRSGELPPQKLQALQRV 34 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 06889999999999988699983999999999
No 58
>>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} (A:)
Probab=36.90 E-value=23 Score=14.42 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=50.4
Q ss_pred HHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 5889887543--02566756799999620012355689999997510344434888887753101221114
Q gi|254780804|r 151 MDLIEESLLI--GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 (352)
Q Consensus 151 ~~~i~~~~~~--~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if 219 (352)
..+|.+.+++ .+..|+.+|+..+-..+..=+..+..|-..|+.|. .+.++|..||+..+........-
T Consensus 6 ~~yi~kvLkqv~~~~~is~~a~~~l~s~~~~~f~rIa~ea~rL~~~~-kr~tlt~~eiq~Av~l~lp~~l~ 75 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYN-KKSTISAREIQTAVRLILPGELA 75 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCSCCHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHCCCCCEEEECCHHHH
T ss_conf 78999888874899885799999999999999999999999999852-98765001220504565576898
No 59
>>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} (A:109-506)
Probab=34.85 E-value=14 Score=15.88 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=58.7
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0256675679999962-001235568999999751034443488888775310122111467888764102369999999
Q gi|254780804|r 161 GQKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 (352)
Q Consensus 161 ~g~~i~~~a~~~L~~~-~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~ 239 (352)
....+++++++.+... -.+|...+.+.++.+..-+.+...++......++-........+..+.+-...+.+|+.....
T Consensus 298 ~~~~~~~~a~~~l~~~~wpgn~~eL~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~a~~~~~~~ve~~~I~~al~~~~g 377 (398)
T 3f8t_A 298 AIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 377 (398)
T ss_dssp HHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99847887409999999999999987777751024577520608999999999999999729297289999999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780804|r 240 F 240 (352)
Q Consensus 240 l 240 (352)
-
T Consensus 378 n 378 (398)
T 3f8t_A 378 Y 378 (398)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 60
>>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} (B:)
Probab=33.44 E-value=26 Score=14.06 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 35889887543--025667567999996200123556899999975103444348888877531012
Q gi|254780804|r 150 LMDLIEESLLI--GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 150 l~~~i~~~~~~--~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
...+|-..+++ .+..|+..|...+-..+..-+..+..|-..|+.|. .+.+||..+|+..|--..
T Consensus 38 y~~YI~kVLKqVhp~~~iS~kam~imnsfv~diferIa~EA~~L~~~~-kr~Tlt~reIQtAVrLlL 103 (126)
T 1tzy_B 38 YSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN-KRSTITSREIQTAVRLLL 103 (126)
T ss_dssp CHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHC
T ss_conf 789999988710889885799999999999999999999999999972-889881999999999988
No 61
>>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} (A:)
Probab=33.16 E-value=26 Score=14.03 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=51.5
Q ss_pred HHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 988754---302566756799999620012355689999997510344434888887753101221114678887
Q gi|254780804|r 154 IEESLL---IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352)
Q Consensus 154 i~~~~~---~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352)
|+..++ .....++++|...+...+.--...+..+-...+.. .++++|+.+||...+....-...-+.+...
T Consensus 14 i~ri~K~~~~d~~~is~ea~~~i~~a~e~Fi~~l~~~A~~~a~~-~~Rkti~~~Di~~ai~~~~f~~~~~~~~~~ 87 (93)
T 1n1j_A 14 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQ-EKRKTINGEDILFAMSTLGFDSYVEPLKLY 87 (93)
T ss_dssp HHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999873765231229999999999999999999999999999-788858899999999886829799999999
No 62
>>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* (D:)
Probab=30.13 E-value=29 Score=13.70 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 35889887543--025667567999996200123556899999975103444348888877531012
Q gi|254780804|r 150 LMDLIEESLLI--GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 150 l~~~i~~~~~~--~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
...+|-..+++ -+..|+..|...+-..+..-+..+..|--.|+-|. .+.+||..+|+..|---.
T Consensus 35 y~~Yi~kVLKqVhpd~giS~kam~imnSfvnDiFerIa~EA~~L~~~~-kr~TltsreIqtAvrllL 100 (123)
T 2nqb_D 35 YAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN-KRSTITSREIQTAVRLLL 100 (123)
T ss_dssp SHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHC
T ss_conf 679999999863888754699999999999999999999999999972-899881999999999988
No 63
>>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} (A:)
Probab=29.45 E-value=30 Score=13.63 Aligned_cols=65 Identities=6% Similarity=-0.089 Sum_probs=46.2
Q ss_pred HHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 9887543--0256675679999962001235568999999751034443488888775310122111
Q gi|254780804|r 154 IEESLLI--GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 (352)
Q Consensus 154 i~~~~~~--~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~i 218 (352)
|+..++. ....++.+|..++...+..=...+..|.-..+.....+++|+.+||...|....+++.
T Consensus 25 Vkkimk~~~~~~~is~~a~~~~a~a~E~Fi~~l~~~a~~~~~~~~krktI~~~di~~ai~~~~~l~F 91 (140)
T 2byk_A 25 VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEF 91 (140)
T ss_dssp ----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGG
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf 9999961974113306789999999999999999999999986269871899999999947971146
No 64
>>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} (A:)
Probab=28.61 E-value=31 Score=13.53 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 1466442001358898875430256--6756799999-620012355689999997510344434888887753101
Q gi|254780804|r 140 ISCYPDNKIHLMDLIEESLLIGQKS--ISKEAKQILL-ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 140 v~~~~~~~~~l~~~i~~~~~~~g~~--i~~~a~~~L~-~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
+.+..++..+-...++-++++..+. ++-+.+.... ..+|.|...+-+|--..++- .+...|+.+|+...+...
T Consensus 6 i~v~lPd~~~R~~Il~~~~~~~~~~~dvd~~~la~~t~g~sGadi~~l~~~A~~~ai~-~~~~~i~~~df~~Al~~i 81 (86)
T 2krk_A 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-ERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
T ss_conf 7899969999999999996799999887999999718999889999999999999998-175765999999999987
No 65
>>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} (A:)
Probab=24.98 E-value=36 Score=13.11 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 88988754302566756799999620012355689999997510344434888887753101
Q gi|254780804|r 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 152 ~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
...+.........++.+|...|.+.+..=...+-.+...++..+ ++++|+.+||...+...
T Consensus 87 ~i~r~~~~~~~~~~~~~A~~~lqea~e~fi~~l~~~a~~~a~ha-kRkTi~~~Di~~A~rr~ 147 (154)
T 1f1e_A 87 TVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADED-GRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHH
T ss_conf 99999984682266799999999999999999999999999991-99807999999999974
No 66
>>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} (A:)
Probab=24.59 E-value=36 Score=13.06 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 200135889887543025--667567999996-20012355689999997510344434888887753101
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQK--SISKEAKQILLA-NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~--~i~~~a~~~L~~-~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
+..+-...++.++++.++ +++-+.+....+ .+|.|...+.+|--..+.- .+...|+.+|+...+...
T Consensus 4 d~~~R~~Il~~~~~~~~~~~~vd~~~la~~t~G~sGADi~~l~~~A~~~a~~-~~~~~i~~~d~~~a~~~v 73 (78)
T 3kw6_A 4 NEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALR-ERRVHVTQEDFEXAVAKV 73 (78)
T ss_dssp CHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
T ss_conf 9999999999995899998767999998708999889999899999999998-474765999999999988
No 67
>>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} (A:1-160)
Probab=22.09 E-value=40 Score=12.74 Aligned_cols=113 Identities=9% Similarity=-0.001 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHH---HC-CHHHHHHHHHCCCCCCCC
Q ss_conf 88753210010138479995699658999999999973356667730776208896---41-899999987178888882
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI---QK-NISTFWNEINSTSLFSKK 83 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~---~~-d~~~l~~~~~t~slF~~~ 83 (352)
+-++..-++.... -+||||+.---+...++.+.+....+... .+......... .. +...........+.-...
T Consensus 27 ~~l~~~i~~~~~~--~~Ll~GppGtGKT~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T 2chg_A 27 QRLKGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWR-DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF 103 (160)
T ss_dssp HHHHHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGGG-GGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSC
T ss_pred HHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999769988--59988899986778999888887525666-66023545566666688887899875003138970
Q ss_pred EEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 39998477410-45789889885105656079998526543
Q gi|254780804|r 84 KIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 84 klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
+++++.++... ......+..-...++.++++|+.....+.
T Consensus 104 ~v~~ide~~~~~~~~~~~~l~~~~~~~~~~~~I~~tN~~~~ 144 (160)
T 2chg_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (160)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHH
T ss_conf 79985003341166999976451268743033323367433
No 68
>>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A (A:1-160)
Probab=21.40 E-value=42 Score=12.65 Aligned_cols=113 Identities=10% Similarity=-0.012 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH---HHH-HCCHHHHHHHHHCCCCCCCC
Q ss_conf 88753210010138479995699658999999999973356667730776208---896-41899999987178888882
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA---LEI-QKNISTFWNEINSTSLFSKK 83 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~---~e~-~~d~~~l~~~~~t~slF~~~ 83 (352)
+-++..-++... .-+||||+.---+...++.+.+....+... .+...... .+. ..+...........+.-...
T Consensus 27 ~~l~~~i~~~~~--~~~Ll~GppGtGKT~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T 2chq_A 27 QRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWR-DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF 103 (160)
T ss_dssp HHHHTTTTTTCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHH-HHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCC
T ss_pred HHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCE
T ss_conf 999999977998--779988979999999999999872545456-51467645566886753111245432000378851
Q ss_pred EEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 39998477410-45789889885105656079998526543
Q gi|254780804|r 84 KIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 (352)
Q Consensus 84 klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k 123 (352)
+++++.++... ......+..-...++.++++|+.....+.
T Consensus 104 ~v~~ide~~~~~~~~~~~~l~~~~~~~~~~~~I~~tN~~~~ 144 (160)
T 2chq_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (160)
T ss_dssp EEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 89997054301488999873002245544336872286454
No 69
>>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* (A:255-404)
Probab=20.54 E-value=43 Score=12.54 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEE---CCC---
Q ss_conf 13847999569965899999999997335666773077620889641899999987178888882399984---774---
Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE---NLS--- 92 (352)
Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~---~~~--- 92 (352)
|...+.++||...+--+..++.+.+.+...+ +++..++..+ .|...+.+.+.... -+|+.. +.+
T Consensus 1 M~kkilI~~~S~~g~T~~~a~~i~~~l~~~g---~~v~~~~~~~--~~~~~~~~~~~~~d-----~ii~~sp~y~~~~~~ 70 (150)
T 2ohh_A 1 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEG---VDVRVYCLHE--DDRSEIVKDILESG-----AIALGAPTIYDEPYP 70 (150)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTT---CEEEEEETTT--SCHHHHHHHHHTCS-----EEEEECCEETTEECT
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCC---CCEEEEEECC--CCHHHHHHHHHHCC-----CEEEECCCCCCCCCH
T ss_conf 2553006875898479999999999987469---7179998367--79689999997589-----389934764785588
Q ss_pred CHHHHHHHHHHHHHCCCCCE-EEEEE-ECCCCCC-HHHHHHHHHHHHH--HHCCCCC----CCCHHHHHHHHHHHHH
Q ss_conf 10457898898851056560-79998-5265431-1356676543112--1014664----4200135889887543
Q gi|254780804|r 93 TEKKVLDCLEEIIIKNICNH-IIIIK-SNEIKKN-NTLRKIAEKFTSV--LAISCYP----DNKIHLMDLIEESLLI 160 (352)
Q Consensus 93 ~~k~~~~~l~~~~~~~~~~~-~li~~-a~~l~k~-~kl~k~~e~~~~~--~~v~~~~----~~~~~l~~~i~~~~~~ 160 (352)
..+...+.+......+.... +.++. ++..... ..+...+...+-. ..+.|.. .....+..|+++.++.
T Consensus 71 ~~k~~~d~~~~~~~~~~~~k~~~v~~t~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (150)
T 2ohh_A 71 SVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAE 147 (150)
T ss_dssp HHHHHHHHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEECCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999766764355898699999138880999999999997799895567896379989999999999999999
No 70
>>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* (A:161-247)
Probab=20.26 E-value=44 Score=12.50 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=29.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q ss_conf 87543025667567999996200123------5568999999751
Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDR------IASRNELQKLSSY 194 (352)
Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~------~~l~~EleKL~ly 194 (352)
.++.+.|..+++++...+.+....+. ..+..|++|+...
T Consensus 23 Rfaarlgf~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~ 67 (87)
T 3h38_A 23 RFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEE 67 (87)
T ss_dssp HHHHHTTCEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 997621456550466788886301211135508899999987631
Done!