HHsearch results for GI: 254780804 and protein with PDBid: 1jr3_D
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=0 Score=353.35 Aligned_cols=333 Identities=12% Similarity=0.165 Sum_probs=295.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
|+.|++.++.+.+++++ +++||+||+|+|+++++++.+.+.+..++.+++++...++. .|++.+.+++.|+|||
T Consensus 1 m~~i~~~~l~~~l~k~~---~~vyll~G~e~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~---~~~~~l~~~~~t~slF 74 (343)
T 1jr3_D 1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN---TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CEEECTTTHHHHHHHCC---CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT---CCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHCCC---CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCHHHHHHHHCCCCCC
T ss_conf 99789999999984679---97799973949999999999999976089742045525676---8999999986068977
Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 8823999847741--04578988988510565607999852654311356676543-11210146644200135889887
Q gi|254780804|r 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAISCYPDNKIHLMDLIEES 157 (352)
Q Consensus 81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~-~~~~~v~~~~~~~~~l~~~i~~~ 157 (352)
|++|+|++++... .++..+.+..++..|++++++++..+..++.++.++.+... +.+.+++|++++.+++..|++++
T Consensus 75 ~~kr~viv~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~i~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 77610022043323341599999998707999869999847752045789999972066699607899889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54302566756799999620012355689999997510344434888887753101221114678887641023699999
Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 (352)
Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l 237 (352)
+++.|++|+++|+++|++.+|+|+..+.||++||++|+++ ++||.++|..+++...+.++|+|+||++.||..+|++.+
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~l~~~~-~~it~~~i~~~~~~~~~~~~f~L~dal~~~~~~~a~~~l 233 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPD-GKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHIL 233 (343)
T ss_dssp HHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9985898889999999998435789999999999973667-652046799884230020399999999755879999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99853110001458999999999999999830256898999986089999768999999986499899999999999999
Q gi|254780804|r 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 (352)
Q Consensus 238 ~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d 317 (352)
..+..+|++|+.+++++.++|+.|+.++.. .++.+..++.+..+ +||++++.+.+++++|+.+++.+++..|.++|
T Consensus 234 ~~l~~~g~~~~~il~~l~~~~~~l~~i~~~--~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~s~~~l~~~l~~L~~~D 309 (343)
T 1jr3_D 234 QQLRLEGSEPVILLRTLQRELLLLVNLKRQ--SAHTPLRALFDKHR--VWQNRRGMMGEALNRLSQTQLRQAVQLLTRTE 309 (343)
T ss_dssp TSSTTTTCCHHHHHHHHHHHHHHHHHHHTC--SSSSCHHHHHHHHT--CCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999877998599999999999999999987--35899999998859--99999999999997399999999999999999
Q ss_pred HHHHCCC-CCHHHHHHHHHHHHHHHHHC
Q ss_conf 9953289-99899999999999996310
Q gi|254780804|r 318 HLARKKK-YLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 318 ~~~K~~~-~~~~~il~~~ll~l~~~a~~ 344 (352)
+.+|++. .+++..++.+++.+|..+--
T Consensus 310 ~~iK~~~~~~~~~~le~l~l~l~~~~~~ 337 (343)
T 1jr3_D 310 LTLKQDYGQSVWAELEGLSLLLCHKPLA 337 (343)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHTTSCCCC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHCHHHH
T ss_conf 9970799999999999999999681757