HHsearch results for GI: 254780804 and protein with PDBid: 2chq_A

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41  E-value=7.7e-10  Score=82.76  Aligned_cols=285  Identities=13%  Similarity=0.105  Sum_probs=190.2

Q ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH---HHCCHHHHHHHHHCCCCCCC-CEE
Q ss_conf             75321001013847999569965899999999997335666773077620889---64189999998717888888-239
Q gi|254780804|r   10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSLFSK-KKI   85 (352)
Q Consensus        10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e---~~~d~~~l~~~~~t~slF~~-~kl   85 (352)
                      +++.-++-..+|  |||||+.-.-+...+..+.+.+..+... .....+.+.+   ...........+.+....+. +++
T Consensus        29 l~~~i~~~~~~~--~L~~Gp~G~GKttla~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (319)
T 2chq_A           29 LKGYVERKNIPH--LLFSGPPGTGKTATAIALARDLFGENWR-DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKI  105 (319)
T ss_dssp             HHTTTTTTCCCC--EEEESSSSSSHHHHHHHHHHHHHTTCHH-HHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEE
T ss_pred             HHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999997799987--9988979999999999999973445678-7647753567776378999999988744406996489


Q ss_pred             EEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99847741-04578988988510565607999852654311356676543112101466442001358898875430256
Q gi|254780804|r   86 ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS  164 (352)
Q Consensus        86 Iii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~  164 (352)
                      |++.++.. .......+...++.++..+.+++......+-.   ..+  ...+..+.+.++...++..++...+..+++.
T Consensus       106 iiide~d~l~~~~q~~ll~~le~~~~~~~~i~~~~~~~~~~---~~i--~sr~~~i~~~~~~~~~i~~~L~~i~~~e~i~  180 (319)
T 2chq_A          106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII---EPI--QSRCAVFRFKPVPKEAMKKRLLEICEKEGVK  180 (319)
T ss_dssp             EEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC---HHH--HTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC---HHH--HCCHHEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99725331679999999877612786511102568501264---767--4730133147899999999999999866668


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf             675679999962001235568999999751034443488888775310122111467888764102369999999853-1
Q gi|254780804|r  165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA-S  243 (352)
Q Consensus       165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~-~  243 (352)
                      ++++.+..++..+++|.+.+.+.++....+.   ...+.+.+..+........+.++++.+..++...+...+..++. .
T Consensus       181 ~~~~~~~~i~~~~~gd~r~ai~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~l~~~~  257 (319)
T 2chq_A          181 ITEDGLEALIYISGGDFRKAINALQGAAAIG---EVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEY  257 (319)
T ss_dssp             BCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS---SCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999862799999999999999769---9887999999976898789999999998299999999999999984


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             10001458999999999999999830256898999986089999768999999986499899999999999999995328
Q gi|254780804|r  244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK  323 (352)
Q Consensus       244 g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~  323 (352)
                      |.++..++..+.+.+         . ....+.             ..               ..+++..+.++|..+.. 
T Consensus       258 g~~~~~ii~~l~~~l---------~-~~~~~~-------------~~---------------k~~~i~~l~~~~~~l~~-  298 (319)
T 2chq_A          258 GMSGEDIVAQLFREI---------I-SMPIKD-------------SL---------------KVQLIDKLGEVDFRLTE-  298 (319)
T ss_dssp             CCCHHHHHHHHHHHH---------H-TSCSCT-------------TH---------------HHHHHHHHHHHHHHHHT-
T ss_pred             CCCHHHHHHHHHHHH---------H-HCCCCH-------------HH---------------HHHHHHHHHHHHHHHHH-
T ss_conf             999999999999999---------8-557998-------------99---------------99999999999999996-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999899999999999996310
Q gi|254780804|r  324 KYLEKNIIFQTILYIAQTACK  344 (352)
Q Consensus       324 ~~~~~~il~~~ll~l~~~a~~  344 (352)
                      +..+..-++.++.+++...+|
T Consensus       299 ~~n~~i~le~~l~~l~~l~kk  319 (319)
T 2chq_A          299 GANERIQLDAYLAYLSTLAKK  319 (319)
T ss_dssp             TCCHHHHHHHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHHHHHHHCC
T ss_conf             799789999999999997388