HHsearch results for GI: 254780804 and protein with PDBid: 2chq_A
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=7.7e-10 Score=82.76 Aligned_cols=285 Identities=13% Similarity=0.105 Sum_probs=190.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH---HHCCHHHHHHHHHCCCCCCC-CEE
Q ss_conf 75321001013847999569965899999999997335666773077620889---64189999998717888888-239
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSLFSK-KKI 85 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e---~~~d~~~l~~~~~t~slF~~-~kl 85 (352)
+++.-++-..+| |||||+.-.-+...+..+.+.+..+... .....+.+.+ ...........+.+....+. +++
T Consensus 29 l~~~i~~~~~~~--~L~~Gp~G~GKttla~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (319)
T 2chq_A 29 LKGYVERKNIPH--LLFSGPPGTGKTATAIALARDLFGENWR-DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKI 105 (319)
T ss_dssp HHTTTTTTCCCC--EEEESSSSSSHHHHHHHHHHHHHTTCHH-HHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEE
T ss_pred HHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999997799987--9988979999999999999973445678-7647753567776378999999988744406996489
Q ss_pred EEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99847741-04578988988510565607999852654311356676543112101466442001358898875430256
Q gi|254780804|r 86 ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 (352)
Q Consensus 86 Iii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 164 (352)
|++.++.. .......+...++.++..+.+++......+-. ..+ ...+..+.+.++...++..++...+..+++.
T Consensus 106 iiide~d~l~~~~q~~ll~~le~~~~~~~~i~~~~~~~~~~---~~i--~sr~~~i~~~~~~~~~i~~~L~~i~~~e~i~ 180 (319)
T 2chq_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII---EPI--QSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp EEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC---HHH--HTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC---HHH--HCCHHEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99725331679999999877612786511102568501264---767--4730133147899999999999999866668
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 675679999962001235568999999751034443488888775310122111467888764102369999999853-1
Q gi|254780804|r 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA-S 243 (352)
Q Consensus 165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~-~ 243 (352)
++++.+..++..+++|.+.+.+.++....+. ...+.+.+..+........+.++++.+..++...+...+..++. .
T Consensus 181 ~~~~~~~~i~~~~~gd~r~ai~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~l~~~~ 257 (319)
T 2chq_A 181 ITEDGLEALIYISGGDFRKAINALQGAAAIG---EVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEY 257 (319)
T ss_dssp BCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS---SCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999862799999999999999769---9887999999976898789999999998299999999999999984
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10001458999999999999999830256898999986089999768999999986499899999999999999995328
Q gi|254780804|r 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 (352)
Q Consensus 244 g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~ 323 (352)
|.++..++..+.+.+ . ....+. .. ..+++..+.++|..+..
T Consensus 258 g~~~~~ii~~l~~~l---------~-~~~~~~-------------~~---------------k~~~i~~l~~~~~~l~~- 298 (319)
T 2chq_A 258 GMSGEDIVAQLFREI---------I-SMPIKD-------------SL---------------KVQLIDKLGEVDFRLTE- 298 (319)
T ss_dssp CCCHHHHHHHHHHHH---------H-TSCSCT-------------TH---------------HHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHH---------H-HCCCCH-------------HH---------------HHHHHHHHHHHHHHHHH-
T ss_conf 999999999999999---------8-557998-------------99---------------99999999999999996-
Q ss_pred CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999999999996310
Q gi|254780804|r 324 KYLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 324 ~~~~~~il~~~ll~l~~~a~~ 344 (352)
+..+..-++.++.+++...+|
T Consensus 299 ~~n~~i~le~~l~~l~~l~kk 319 (319)
T 2chq_A 299 GANERIQLDAYLAYLSTLAKK 319 (319)
T ss_dssp TCCHHHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 799789999999999997388