HHsearch results for GI: 254780804 and protein with PDBid: 3bos_A

>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=98.48  E-value=1.4e-05  Score=54.52  Aligned_cols=194  Identities=9%  Similarity=0.072  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             78875321001013847999569965899999999997335666773077620889641899999987178888882399
Q gi|254780804|r    7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII   86 (352)
Q Consensus         7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klI   86 (352)
                      .+.++...++.. .+++| +||+..--+...++.+.+.+.....   ....++..........+      ..-+....++
T Consensus        40 ~~~l~~~~~~~~-~~~l~-l~Gp~GsGKThL~~ai~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~l  108 (242)
T 3bos_A           40 IGALKSAASGDG-VQAIY-LWGPVKSGRTHLIHAACARANELER---RSFYIPLGIHASISTAL------LEGLEQFDLI  108 (242)
T ss_dssp             HHHHHHHHHTCS-CSEEE-EECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEGGGGGGSCGGG------GTTGGGSSEE
T ss_pred             HHHHHHHHHCCC-CCEEE-EECCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHCCCC
T ss_conf             999998873899-88598-8899999899999999998542113---44444888876418999------9998745871


Q ss_pred             EEECCCCH---HHHHHHHHHHHHC--CCCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             98477410---4578988988510--56560799985265431--13566765431121014664420013588988754
Q gi|254780804|r   87 LIENLSTE---KKVLDCLEEIIIK--NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL  159 (352)
Q Consensus        87 ii~~~~~~---k~~~~~l~~~~~~--~~~~~~li~~a~~l~k~--~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~  159 (352)
                      ++++....   ....+.+...+..  ......+++.+......  .....+...-..+.++...+++..++...++..+.
T Consensus       109 ~iDdi~~~~~~~~~~~~lf~l~n~~~~~~~~~il~~~~~~~~~~~~~~~dL~SRl~~~~~~~i~~~~~~~~~~iL~~~~~  188 (242)
T 3bos_A          109 CIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA  188 (242)
T ss_dssp             EEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred             EEHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             23017765187799999998764430245652541488981665302333011243321245679998999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf             3025667567999996200123556899999975103-444348888877531
Q gi|254780804|r  160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC  211 (352)
Q Consensus       160 ~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~  211 (352)
                      ++|+.++++++++|+.++.+|.+.+.+-+++|..++. .+++||.+.|.+++.
T Consensus       189 ~~~i~l~~~~l~~i~~~~~~~~r~l~~~l~~L~~~s~~~~~~iti~~vk~~L~  241 (242)
T 3bos_A          189 MRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR  241 (242)
T ss_dssp             HTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred             HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             74988889999999996479999999999999999998589999999999867