HHsearch results for GI: 254780804 and protein with PDBid: 3bos_A
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=98.48 E-value=1.4e-05 Score=54.52 Aligned_cols=194 Identities=9% Similarity=0.072 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 78875321001013847999569965899999999997335666773077620889641899999987178888882399
Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klI 86 (352)
.+.++...++.. .+++| +||+..--+...++.+.+.+..... ....++..........+ ..-+....++
T Consensus 40 ~~~l~~~~~~~~-~~~l~-l~Gp~GsGKThL~~ai~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~l 108 (242)
T 3bos_A 40 IGALKSAASGDG-VQAIY-LWGPVKSGRTHLIHAACARANELER---RSFYIPLGIHASISTAL------LEGLEQFDLI 108 (242)
T ss_dssp HHHHHHHHHTCS-CSEEE-EECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEGGGGGGSCGGG------GTTGGGSSEE
T ss_pred HHHHHHHHHCCC-CCEEE-EECCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHCCCC
T ss_conf 999998873899-88598-8899999899999999998542113---44444888876418999------9998745871
Q ss_pred EEECCCCH---HHHHHHHHHHHHC--CCCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98477410---4578988988510--56560799985265431--13566765431121014664420013588988754
Q gi|254780804|r 87 LIENLSTE---KKVLDCLEEIIIK--NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159 (352)
Q Consensus 87 ii~~~~~~---k~~~~~l~~~~~~--~~~~~~li~~a~~l~k~--~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~ 159 (352)
++++.... ....+.+...+.. ......+++.+...... .....+...-..+.++...+++..++...++..+.
T Consensus 109 ~iDdi~~~~~~~~~~~~lf~l~n~~~~~~~~~il~~~~~~~~~~~~~~~dL~SRl~~~~~~~i~~~~~~~~~~iL~~~~~ 188 (242)
T 3bos_A 109 CIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred EEHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 23017765187799999998764430245652541488981665302333011243321245679998999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf 3025667567999996200123556899999975103-444348888877531
Q gi|254780804|r 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352)
Q Consensus 160 ~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352)
++|+.++++++++|+.++.+|.+.+.+-+++|..++. .+++||.+.|.+++.
T Consensus 189 ~~~i~l~~~~l~~i~~~~~~~~r~l~~~l~~L~~~s~~~~~~iti~~vk~~L~ 241 (242)
T 3bos_A 189 MRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 74988889999999996479999999999999999998589999999999867