HHsearch results for GI: 254780804 and protein with PDBid: 3pfi_A
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.12 E-value=0.00016 Score=47.56 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=129.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHH
Q ss_conf 99956996589999999999733566677307762088964189999998717888888239998477410-45789889
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLE 102 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~ 102 (352)
+||||+.---+-..+..+.+.+.. +.....+.++ ...... ......++.+.++.++..... +...+.+.
T Consensus 58 ~lf~GPPG~GKTTlA~iiA~~~~~------~~~~~~a~~~-~~~~d~---~~~~~~~~~~~ilfiDeih~~~~~~q~~ll 127 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMSA------NIKTTAAPMI-EKSGDL---AAILTNLSEGDILFIDEIHRLSPAIEEVLY 127 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC------CEEEEEGGGC-CSHHHH---HHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC------CCCCCCCCCC-CCHHHH---HHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 898898998799999999984189------8555556433-318999---998651342036765323202543200100
Q ss_pred HHHHC------------------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88510------------------565607999852654311356676543112101466442001358898875430256
Q gi|254780804|r 103 EIIIK------------------NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 (352)
Q Consensus 103 ~~~~~------------------~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 164 (352)
...+. ++....++.......+ +...+ .+.....+.+.+.+..++..+++..+...++.
T Consensus 128 ~~ie~~~i~~i~~~~~~~~~~~~~~~~~~~i~a~~~~~~---l~~~l-~sR~~~~~~~~~~~~~~i~~~l~~i~~~~~i~ 203 (338)
T 3pfi_A 128 PAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM---LSNPL-RDRFGMQFRLEFYKDSELALILQKAALKLNKT 203 (338)
T ss_dssp HHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG---SCHHH-HTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHH---CCHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 343243675410101210233568753244430353653---24144-31256766540147899999999999774133
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHH---------HCCCCCCHHHHHHHHHH-----H
Q ss_conf 67567999996200123556899999975103--44434888887753---------10122111467888764-----1
Q gi|254780804|r 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDII---------CDTHVLYIEEIINATIQ-----G 228 (352)
Q Consensus 165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~--~~~~It~~dI~~~v---------~~~~~~~if~L~dai~~-----~ 228 (352)
++++|+..++..+++|.+.+.+-++....++. +...++.+.++.++ .+......++++.|+-. .
T Consensus 204 ~~~~al~~ia~~s~gd~R~al~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Dk~gd~hyd~isaf~~ksvr~s 283 (338)
T 3pfi_A 204 CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLA 283 (338)
T ss_dssp ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHH
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCH
T ss_conf 67999999999963850455666899998764157886329999999998654214748202899999996499888660
Q ss_pred HHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 0236999999985311000145
Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHAL 250 (352)
Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~i 250 (352)
+...|+.+..++++.+.+|..+
T Consensus 284 ~~~Aal~~~~~~iE~~~ep~li 305 (338)
T 3pfi_A 284 SIAAALSEDENTIEDVIEPYLL 305 (338)
T ss_dssp HHHHHTTCCHHHHHHTTHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7888865667778876527998