HHSEARCH alignment of GI: 254780804 and SCOP domain: d1l8qa2

Alignment
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=97.90  E-value=0.00019  Score=45.52  Aligned_cols=182  Identities=12%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHH---HCCCCCCCC
Q ss_conf             78875321001013847999569965899999999997335666773077620889641899999987---178888882
Q gi|254780804|r    7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSLFSKK   83 (352)
Q Consensus         7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~---~t~slF~~~   83 (352)
                      ++.++..-++.-..++..++||+..--+...++.+.+.+....   ..+..++..++......-+..-   .....+...
T Consensus        22 ~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (213)
T d1l8qa2          22 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV   98 (213)
T ss_dssp             HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC---CCEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             9999999867687788579988899839999999998744676---5048844378799999998716626678987621


Q ss_pred             EEEEEECCCC---HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             3999847741---04578988988510-565607999852654311--35667654311210146644200135889887
Q gi|254780804|r   84 KIILIENLST---EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES  157 (352)
Q Consensus        84 klIii~~~~~---~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~  157 (352)
                      .+++|++...   .+.....+-.++.. ...+..+|+.+......-  ....+...-..+.++...| +.......++.+
T Consensus        99 dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p-~d~~~~~iL~~~  177 (213)
T d1l8qa2          99 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK  177 (213)
T ss_dssp             SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECC-CCHHHHHHHHHH
T ss_conf             3010112655058657788999999987631663899548751001343267888861856899788-827999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             543025667567999996200123556899999975
Q gi|254780804|r  158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS  193 (352)
Q Consensus       158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l  193 (352)
                      +...|+.++++++++|+.++ .|.+.+...|..|.+
T Consensus       178 a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~l  212 (213)
T d1l8qa2         178 LKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL  212 (213)
T ss_dssp             HHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHHC
T ss_conf             99829999999999999856-869989999998634


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]