Probab=99.38 E-value=4.3e-11 Score=89.49 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=137.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC------------------CEEEEEEHHHH--HCCHHHHHHHHHCCC
Q ss_conf 1384799956996589999999999733566677------------------30776208896--418999999871788
Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDP------------------FSLVVLNALEI--QKNISTFWNEINSTS 78 (352)
Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~------------------~~~~~~~~~e~--~~d~~~l~~~~~t~s 78 (352)
.+| .+||||+.-.-+...+..+.+.+..+...+ +++..+++.+- ..+...+.+.+...|
T Consensus 33 ~~~-~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~ 111 (239)
T d1njfa_ 33 IHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 111 (239)
T ss_dssp CCS-EEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSC
T ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCC
T ss_conf 870-5988889987589999999998468556666755542479999747987079961120078999999999997465
Q ss_pred CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 8888239998477410-457898898851056560799985265431135667654311210146644200135889887
Q gi|254780804|r 79 LFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 (352)
Q Consensus 79 lF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~ 157 (352)
..++.|+|+++++... ......|...++.|++++.+|+.+.+..+ +...+ ...+..+++.+++..++..|+...
T Consensus 112 ~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~---i~~~i--~SRc~~i~~~~~~~~~i~~~l~~i 186 (239)
T d1njfa_ 112 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK---LPVTI--LSRCLQFHLKALDVEQIRHQLEHI 186 (239)
T ss_dssp SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG---SCHHH--HTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCHHH--HHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 2599879999781108999999999998568988699997388563---67657--612102222467678766688787
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 543025667567999996200123556899999975103444348888877531
Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
+..+|..+++++++.++..++||.+.+.+.+++.... +.++|+.++|.++++
T Consensus 187 ~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~--~~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 187 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAMLG 238 (239)
T ss_dssp HHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHH--TTTSBCHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHC
T ss_conf 7643147899999999997699799999999999984--799858999999868
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]