HHSEARCH alignment of GI: 254780804 and SCOP domain: d1ny5a2

Alignment
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=93.72  E-value=0.18  Score=25.66  Aligned_cols=196  Identities=18%  Similarity=0.218  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH---CCCC----
Q ss_conf             788753210010138479995699658999999999973356667730776208896418999999871---7888----
Q gi|254780804|r    7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN---STSL----   79 (352)
Q Consensus         7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~---t~sl----   79 (352)
                      +++++....-.....+ ++++|+.---+...++.+.. .......++.  ..+...+  +.......+.   ...+    
T Consensus        10 ~~~~~~~~~~a~~~~p-vlI~Ge~GtGK~~~A~~ih~-~s~~~~~~~~--~~~~~~~--~~~~~~~~lfg~~~~~~~~~~   83 (247)
T d1ny5a2          10 KEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK-LSDRSKEPFV--ALNVASI--PRDIFEAELFGYEKGAFTGAV   83 (247)
T ss_dssp             HHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH-HSTTTTSCEE--EEETTTS--CHHHHHHHHHCBCTTSSTTCC
T ss_pred             HHHHHHHHHHHCCCCC-EEEECCCCCCHHHHHHHHHH-HCCCCCCCCC--CCHHHHH--HHCCCHHHHCCCCCCCCCCCC
T ss_conf             9999999999688997-89989998179999999999-6587653320--2102343--101128876285357767753


Q ss_pred             ------C--CCCEEEEEECCCC-HHHHHHHHHHHHHC-----------CCCCEEEEEEECC-CCC---CHHHHH-HHHHH
Q ss_conf             ------8--8823999847741-04578988988510-----------5656079998526-543---113566-76543
Q gi|254780804|r   80 ------F--SKKKIILIENLST-EKKVLDCLEEIIIK-----------NICNHIIIIKSNE-IKK---NNTLRK-IAEKF  134 (352)
Q Consensus        80 ------F--~~~klIii~~~~~-~k~~~~~l~~~~~~-----------~~~~~~li~~a~~-l~k---~~kl~k-~~e~~  134 (352)
                            |  ++.-.+++++... .......|..++..           ...++.+|+.+.. +..   ...++. ++..-
T Consensus        84 ~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l  163 (247)
T d1ny5a2          84 SSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL  163 (247)
T ss_dssp             SCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH
T ss_pred             CCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCEEECCCCCCEECCEEEEEECCCCHHHHHHCCCCCHHHHHHC
T ss_conf             35588877238997999583759999999999999759878789997023375999933979999988599748888640


Q ss_pred             HHHHHCCCCCCC--CHHHHHHHHHHHH----HCCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             112101466442--0013588988754----3025---66756799999620-012355689999997510344434888
Q gi|254780804|r  135 TSVLAISCYPDN--KIHLMDLIEESLL----IGQK---SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILITEQ  204 (352)
Q Consensus       135 ~~~~~v~~~~~~--~~~l~~~i~~~~~----~~g~---~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It~~  204 (352)
                       ....+...|+.  ..++..++...+.    +.|.   .++++|++.|..+- .||...+.+-++.+.+.+.+ ..|+.+
T Consensus       164 -~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~~~-~~I~~~  241 (247)
T d1ny5a2         164 -GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG-KFIDRG  241 (247)
T ss_dssp             -TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS-SEECHH
T ss_pred             -CEEEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEECHH
T ss_conf             -810655897011624576640013433466507877888999999998489998999999999999981898-858879


Q ss_pred             HHHHHH
Q ss_conf             887753
Q gi|254780804|r  205 HVKDII  210 (352)
Q Consensus       205 dI~~~v  210 (352)
                      |+-.++
T Consensus       242 dl~~l~  247 (247)
T d1ny5a2         242 ELSCLV  247 (247)
T ss_dssp             HHHHHC
T ss_pred             HCCCCC
T ss_conf             800219


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]