Query gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs 150 out of 1917
Neff 8.6
Searched_HMMs 13730
Date Wed Jun 1 06:26:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780804.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jqlb_ c.37.1.20 (B:) delta s 99.8 2.4E-19 1.8E-23 144.1 11.9 137 1-143 1-140 (140)
2 d1jr3d1 a.80.1.1 (D:212-338) d 99.7 2.4E-17 1.8E-21 130.9 10.3 122 216-341 1-123 (127)
3 d1njfa_ c.37.1.20 (A:) delta p 99.4 4.3E-11 3.1E-15 89.5 17.7 185 19-211 33-238 (239)
4 d1sxjc2 c.37.1.20 (C:12-238) R 99.1 2.3E-09 1.6E-13 78.1 14.6 194 9-211 25-226 (227)
5 d1sxjb2 c.37.1.20 (B:7-230) Re 98.9 7.8E-08 5.7E-12 67.9 15.7 179 24-211 39-223 (224)
6 d1sxjd2 c.37.1.20 (D:26-262) R 98.9 7E-08 5.1E-12 68.2 14.1 195 8-211 22-236 (237)
7 d1iqpa2 c.37.1.20 (A:2-232) Re 98.6 1.2E-06 8.8E-11 60.0 15.0 179 23-210 47-230 (231)
8 d1a5ta2 c.37.1.20 (A:1-207) de 98.6 7.5E-07 5.4E-11 61.4 13.2 169 8-188 13-205 (207)
9 d1jr3a1 a.80.1.1 (A:243-368) g 98.5 1.2E-06 8.4E-11 60.1 11.6 113 215-340 4-116 (126)
10 d1sxja2 c.37.1.20 (A:295-547) 98.3 3.7E-05 2.7E-09 50.1 14.8 174 22-212 53-248 (253)
11 d1sxje2 c.37.1.20 (E:4-255) Re 98.0 0.00034 2.5E-08 43.8 15.6 108 80-193 129-239 (252)
12 d2gnoa2 c.37.1.20 (A:11-208) g 98.0 0.00018 1.3E-08 45.7 14.0 113 8-122 4-120 (198)
13 d1l8qa2 c.37.1.20 (A:77-289) C 97.9 0.00019 1.4E-08 45.5 12.3 182 7-193 22-212 (213)
14 d1ixsb2 c.37.1.20 (B:4-242) Ho 97.8 0.0011 7.7E-08 40.5 17.3 176 23-211 37-233 (239)
15 d1in4a2 c.37.1.20 (A:17-254) H 97.5 0.003 2.2E-07 37.5 17.6 175 23-211 37-232 (238)
16 d1fnna2 c.37.1.20 (A:1-276) CD 96.2 0.036 2.6E-06 30.4 12.9 198 8-211 30-271 (276)
17 d1ny5a2 c.37.1.20 (A:138-384) 93.7 0.18 1.3E-05 25.7 16.2 196 7-210 10-247 (247)
18 d1ixza_ c.37.1.20 (A:) AAA dom 93.4 0.21 1.5E-05 25.3 14.6 174 23-211 44-247 (247)
19 d1w5sa2 c.37.1.20 (A:7-293) CD 92.0 0.32 2.3E-05 24.1 8.8 74 139-212 203-286 (287)
20 d2huec1 a.22.1.1 (C:20-101) Hi 88.3 0.64 4.6E-05 22.1 6.2 60 153-213 14-74 (82)
21 d1tafb_ a.22.1.3 (B:) TAF(II)6 86.0 0.85 6.2E-05 21.2 6.7 58 152-210 10-68 (70)
22 d1lv7a_ c.37.1.20 (A:) AAA dom 86.0 0.86 6.3E-05 21.2 14.9 175 22-211 46-250 (256)
23 d3ctda1 a.80.1.2 (A:258-420) U 79.0 1.3 9.2E-05 20.1 4.3 51 217-275 5-55 (163)
24 d1qvra3 c.37.1.20 (A:536-850) 78.7 1.6 0.00012 19.4 11.3 161 23-191 55-280 (315)
25 d3bgea1 a.80.1.2 (A:251-434) U 78.1 1.7 0.00012 19.3 8.2 78 217-312 7-84 (184)
26 d1iqpa1 a.80.1.1 (A:233-327) R 75.1 2 0.00015 18.8 9.5 90 216-344 5-95 (95)
27 d1sxjc1 a.80.1.1 (C:239-333) R 73.8 2.2 0.00016 18.6 4.5 85 217-339 5-90 (95)
28 d1f1ea_ a.22.1.2 (A:) Archaeal 71.5 2.4 0.00018 18.2 5.5 52 162-214 17-68 (151)
29 d1htaa_ a.22.1.2 (A:) Archaeal 69.5 2.7 0.0002 18.0 6.8 55 156-211 11-66 (68)
30 d1sxjd1 a.80.1.1 (D:263-353) R 62.0 3.7 0.00027 17.0 10.3 88 215-340 3-90 (91)
31 d1h3oa_ a.22.1.3 (A:) TAF(II)- 54.4 5 0.00036 16.2 4.5 42 148-192 6-48 (50)
32 d3bula1 a.46.1.1 (A:651-740) M 52.6 5.3 0.00039 16.0 3.8 42 214-255 5-48 (90)
33 d1ku5a_ a.22.1.2 (A:) Archaeal 50.6 5.7 0.00041 15.8 5.7 48 163-211 18-65 (66)
34 d2r9ga1 a.80.1.2 (A:238-423) U 48.2 6.2 0.00045 15.6 6.4 52 217-277 6-57 (186)
35 d2qw6a1 a.80.1.2 (A:241-328) U 48.0 6.2 0.00045 15.5 4.2 52 217-277 3-54 (88)
36 d1zl8a1 a.194.1.1 (A:4-53) Lin 45.1 6.9 0.0005 15.2 3.5 31 226-256 2-32 (50)
37 d1tzyb_ a.22.1.1 (B:) Histone 39.9 8.2 0.0006 14.7 4.8 63 152-215 7-71 (92)
38 d1y74a1 a.194.1.1 (A:17-73) Li 38.5 8.7 0.00063 14.6 3.9 31 226-256 3-33 (57)
39 d1r6bx2 c.37.1.20 (X:169-436) 26.4 14 0.00099 13.3 10.5 179 24-212 42-264 (268)
40 d1jfib_ a.22.1.3 (B:) Negative 26.0 14 0.001 13.2 7.8 64 149-215 9-72 (135)
41 d1r7ra3 c.37.1.20 (A:471-735) 24.8 15 0.0011 13.1 12.2 128 22-162 42-195 (265)
42 d1e32a2 c.37.1.20 (A:201-458) 22.9 16 0.0012 12.8 14.6 153 22-188 39-218 (258)
No 1
>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=99.80 E-value=2.4e-19 Score=144.12 Aligned_cols=137 Identities=11% Similarity=0.193 Sum_probs=111.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf 97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 (352)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF 80 (352)
|..|++.++.+.+++++ .+||++||+|.||+++..+.+.+.+..++.++++...++ .+ .+++.+++++.|+|||
T Consensus 1 Mm~i~~~~L~~~l~k~l---~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~t~slF 74 (140)
T d1jqlb_ 1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-PN--TDWNAIFSLCQAMSLF 74 (140)
T ss_dssp CEECCGGGHHHHHHHCC---CSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCS-TT--CCHHHHHHHHHCCCTT
T ss_pred CCCCCHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CC--CCHHHHHHHHCCCCCC
T ss_conf 98479999999985279---848999848299999999999999885896204665036-66--8999999997079865
Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCC
Q ss_conf 8823999847741--0457898898851056560799985265431135667654-3112101466
Q gi|254780804|r 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143 (352)
Q Consensus 81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~ 143 (352)
|++|+|+|++... .++..+.|.+|+.+|++++++|+.++++++.++-.|++.. .+.+..|+|.
T Consensus 75 ~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~Cq 140 (140)
T d1jqlb_ 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (140)
T ss_dssp CCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEECC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 686799998378798477899999998279998799998278771456519999998397489588
No 2
>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]}
Probab=99.71 E-value=2.4e-17 Score=130.86 Aligned_cols=122 Identities=11% Similarity=0.141 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 11146788876410236999999985311000145899999999999999983025689899998608999976899999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~ 295 (352)
+++|+|+||++.||..+|+.+++++..+|++|+.+++++.+||++|+.++.. .++.+..++++.++ +||++++.+.
T Consensus 1 f~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~--~~~~~~~~~~~~~~--i~~~~~~~~~ 76 (127)
T d1jr3d1 1 FTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQ--SAHTPLRALFDKHR--VWQNRRGMMG 76 (127)
T ss_dssp CCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTC--SSSSCHHHHHHHHT--CCSSHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHCC--CCHHHHHHHH
T ss_conf 9888999999859999999999999886996699999999999999998875--01598999997849--9999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 99864998999999999999999953289-99899999999999996
Q gi|254780804|r 296 ESLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQT 341 (352)
Q Consensus 296 ~q~~~~s~~~l~~~l~~L~~~d~~~K~~~-~~~~~il~~~ll~l~~~ 341 (352)
+|+++|+.+++.+++..|.++|..+|++. .++...++.+++.+|..
T Consensus 77 ~~~~~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc~~ 123 (127)
T d1jr3d1 77 EALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK 123 (127)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99986899999999999999999984899899999999999998480
No 3
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=99.38 E-value=4.3e-11 Score=89.49 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=137.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC------------------CEEEEEEHHHH--HCCHHHHHHHHHCCC
Q ss_conf 1384799956996589999999999733566677------------------30776208896--418999999871788
Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDP------------------FSLVVLNALEI--QKNISTFWNEINSTS 78 (352)
Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~------------------~~~~~~~~~e~--~~d~~~l~~~~~t~s 78 (352)
.+| .+||||+.-.-+...+..+.+.+..+...+ +++..+++.+- ..+...+.+.+...|
T Consensus 33 ~~~-~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~ 111 (239)
T d1njfa_ 33 IHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 111 (239)
T ss_dssp CCS-EEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSC
T ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCC
T ss_conf 870-5988889987589999999998468556666755542479999747987079961120078999999999997465
Q ss_pred CCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 8888239998477410-457898898851056560799985265431135667654311210146644200135889887
Q gi|254780804|r 79 LFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 (352)
Q Consensus 79 lF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~ 157 (352)
..++.|+|+++++... ......|...++.|++++.+|+.+.+..+ +...+ ...+..+++.+++..++..|+...
T Consensus 112 ~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~---i~~~i--~SRc~~i~~~~~~~~~i~~~l~~i 186 (239)
T d1njfa_ 112 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK---LPVTI--LSRCLQFHLKALDVEQIRHQLEHI 186 (239)
T ss_dssp SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG---SCHHH--HTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCHHH--HHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 2599879999781108999999999998568988699997388563---67657--612102222467678766688787
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 543025667567999996200123556899999975103444348888877531
Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
+..+|..+++++++.++..++||.+.+.+.+++.... +.++|+.++|.++++
T Consensus 187 ~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~--~~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 187 LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS--GDGQVSTQAVSAMLG 238 (239)
T ss_dssp HHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHH--TTTSBCHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHC
T ss_conf 7643147899999999997699799999999999984--799858999999868
No 4
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.11 E-value=2.3e-09 Score=78.08 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=130.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEEEHHHHHCCHHHHHHHHHCC-CCCCCC
Q ss_conf 8753210010138479995699658999999999973356667----73077620889641899999987178-888882
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST-SLFSKK 83 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----~~~~~~~~~~e~~~d~~~l~~~~~t~-slF~~~ 83 (352)
-+++.-++....| +||||+.-.-+...+..+.+.+...... +++.....+.+.... ......... ....+.
T Consensus 25 ~L~~~i~~~~~~~--lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 100 (227)
T d1sxjc2 25 TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN--QIKDFASTRQIFSKGF 100 (227)
T ss_dssp HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT--HHHHHHHBCCSSSCSC
T ss_pred HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEC--CHHHCCCCCCCCCCCE
T ss_conf 9999997699985--99988998775589999999851677764157731555687543210--0010111000257771
Q ss_pred EEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 39998477410-45789889885105656079998526543113566765431121014664420013588988754302
Q gi|254780804|r 84 KIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 (352)
Q Consensus 84 klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g 162 (352)
++|+++++... ......+...++.++..+.+++......+-. ..+ ...+..+.|.+++..++..++...+..+|
T Consensus 101 kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~---~~i--~sr~~~i~~~~~~~~~i~~~l~~I~~~e~ 175 (227)
T d1sxjc2 101 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT---PAL--LSQCTRFRFQPLPQEAIERRIANVLVHEK 175 (227)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HTTSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH---HHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999966320002378999988631120023201267087759---999--98875401235652000110212211112
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHH
Q ss_conf 5667567999996200123556899999975103--444348888877531
Q gi|254780804|r 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDIIC 211 (352)
Q Consensus 163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~--~~~~It~~dI~~~v~ 211 (352)
+++++++++.+++.++||.+.+.+.||.+..+.. +...||.++|.++++
T Consensus 176 i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 176 LKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp CCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHC
T ss_conf 458989999999984996999999999999855788888228999999768
No 5
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.90 E-value=7.8e-08 Score=67.89 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=123.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHC--C-HHHHHHHHHCCCC--CCCCEEEEEECCCCH-HHH
Q ss_conf 999569965899999999997335666773077620889641--8-9999998717888--888239998477410-457
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--N-ISTFWNEINSTSL--FSKKKIILIENLSTE-KKV 97 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~--d-~~~l~~~~~t~sl--F~~~klIii~~~~~~-k~~ 97 (352)
+||||+.-.-+...+..+.+.+..+. ..+++..+...+... + ...+.+.+.+... .+..++|+++++... ...
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~~~~-~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~ 117 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 117 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHH
T ss_conf 99988999870546999999972566-43221111134557852116678878876224777635999982443232157
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 89889885105656079998526543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 (352)
Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~ 177 (352)
...+...++.++..+.+++......+-. ..+ ...+..+.+.+++..++..++...++++|+.+++++++.++..+
T Consensus 118 ~~~ll~~~e~~~~~~~~i~~~~~~~~i~---~~l--~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s 192 (224)
T d1sxjb2 118 QQALRRTMELYSNSTRFAFACNQSNKII---EPL--QSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA 192 (224)
T ss_dssp HHTTHHHHHHTTTTEEEEEEESCGGGSC---HHH--HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHH---HHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 7877520112333336653147430210---678--87777765313322456788877777404678999999999986
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 0123556899999975103444348888877531
Q gi|254780804|r 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 178 g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
+||.+.+.+.|+-... +.+.||.++|.+++.
T Consensus 193 ~Gd~R~ai~~Lq~~~~---~~~~i~~~~i~~~~d 223 (224)
T d1sxjb2 193 EGDMRQAINNLQSTVA---GHGLVNADNVFKIVD 223 (224)
T ss_dssp TTCHHHHHHHHHHHHH---HHSSBCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHC
T ss_conf 9969999999999997---699848999999868
No 6
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.86 E-value=7e-08 Score=68.18 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH-----HHHHCCHHHHHHHHHCC-----
Q ss_conf 88753210010138479995699658999999999973356667730776208-----89641899999987178-----
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINST----- 77 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~-----~e~~~d~~~l~~~~~t~----- 77 (352)
+.+++.-++.... -++|||+.-.-+...++.+.+.+............... .+... ..+-+...+.
T Consensus 22 ~~l~~~i~~~~~~--~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 97 (237)
T d1sxjd2 22 TVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR--EKVKNFARLTVSKPS 97 (237)
T ss_dssp HHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT--THHHHHHHSCCCCCC
T ss_pred HHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCHHHH--HHHHHHHHHHHHHHH
T ss_conf 9999999869988--599989999984999999999970976334321220021135606789--999887654443246
Q ss_pred ------CCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf ------88888239998477410-45789889885105656079998526543113566765431121014664420013
Q gi|254780804|r 78 ------SLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 (352)
Q Consensus 78 ------slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l 150 (352)
...+..++|+++++... ......+...+..++....+++......+-. ... ...+..+.+.+.+..++
T Consensus 98 ~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~--~~l---~sr~~~i~f~~~~~~~~ 172 (237)
T d1sxjd2 98 KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII--DPL---ASQCSKFRFKALDASNA 172 (237)
T ss_dssp TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC--HHH---HHHSEEEECCCCCHHHH
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCC---CCHHHHHCCCCCCCCCC
T ss_conf 7877613566736999955133677778887630122223333212246642223--311---10001102333333211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHH
Q ss_conf 5889887543025667567999996200123556899999975---103444348888877531
Q gi|254780804|r 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS---YCLEDILITEQHVKDIIC 211 (352)
Q Consensus 151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l---y~~~~~~It~~dI~~~v~ 211 (352)
..++...+.++|+.+++++++.++..++||.+.+.+.|+..+. +.++++.||.++|+++.+
T Consensus 173 ~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~g 236 (237)
T d1sxjd2 173 IDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 236 (237)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHC
T ss_conf 0010114555267578999999999859989999999999997363127888458999998529
No 7
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.65 E-value=1.2e-06 Score=60.01 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=121.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--CCHHHHHHHHH-CCCCCC-CCEEEEEECCCC-HHHH
Q ss_conf 799956996589999999999733566677307762088964--18999999871-788888-823999847741-0457
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEIN-STSLFS-KKKIILIENLST-EKKV 97 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--~d~~~l~~~~~-t~slF~-~~klIii~~~~~-~k~~ 97 (352)
.+||||+.-.-+...++.+.+.+..+ ...++...+++.+.. .+......+.. .....+ ..++++++++.. ....
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~~-~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~ 125 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 125 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCHHH
T ss_conf 69997899974879999999998731-46777158756766663488888888875100157872288614344312147
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 89889885105656079998526543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 (352)
Q Consensus 98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~ 177 (352)
...+...+..++..+.+|+......+-. ..+ ...+..+.+.+++..++..+++..+.++|+.++++++..+++.+
T Consensus 126 ~~~ll~~l~~~~~~~~~i~~~n~~~~i~---~~l--~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~ 200 (231)
T d1iqpa2 126 QQALRRTMEMFSSNVRFILSCNYSSKII---EPI--QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA 200 (231)
T ss_dssp HHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHCH---HHH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 8987641124776447886148766565---768--47312101233430467789988899839998999999999983
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 012355689999997510344434888887753
Q gi|254780804|r 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 178 g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352)
+||.+.+.+.|+..+.. .+.||.++|..+.
T Consensus 201 ~gdiR~ai~~Lq~~~~~---~~~it~e~v~~v~ 230 (231)
T d1iqpa2 201 EGDMRRAINILQAAAAL---DKKITDENVFMVA 230 (231)
T ss_dssp TTCHHHHHHHHHHHHTT---CSEECHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC---CCCCCHHHHHHHH
T ss_conf 99799999999999984---9995899987652
No 8
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=98.61 E-value=7.5e-07 Score=61.39 Aligned_cols=169 Identities=9% Similarity=0.054 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC------------------CCEEEEE--EHHH--H-H
Q ss_conf 88753210010138479995699658999999999973356667------------------7307762--0889--6-4
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD------------------PFSLVVL--NALE--I-Q 64 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~------------------~~~~~~~--~~~e--~-~ 64 (352)
++.+...++ ..+| .+||+|++-.-+...+..+.+.+...... ...+..+ +... + .
T Consensus 13 ~l~~~~~~~-~l~h-~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~ 90 (207)
T d1a5ta2 13 KLVASYQAG-RGHH-ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGV 90 (207)
T ss_dssp HHHHHHHTT-CCCS-EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCH
T ss_pred HHHHHHHCC-CCCE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCC
T ss_conf 999999859-9673-79888999875999999999821010123212233420155654303431101234313453332
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 18999999871788888823999847741-04578988988510565607999852654311356676543112101466
Q gi|254780804|r 65 KNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 (352)
Q Consensus 65 ~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~ 143 (352)
.+...+.+.+...|..+++|+|+++++.. .......|...++.||.++.+|+.+.+..+ +-..+ ...+..+.+.
T Consensus 91 ~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~---ll~tI--~SRc~~i~~~ 165 (207)
T d1a5ta2 91 DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER---LLATL--RSRCRLHYLA 165 (207)
T ss_dssp HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG---SCHHH--HTTSEEEECC
T ss_pred CHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHH--CCEEEEEECC
T ss_conf 114677653211003576404773134420000149999999850111104553068655---10320--0215788268
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 442001358898875430256675679999962001235568999
Q gi|254780804|r 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 (352)
Q Consensus 144 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~El 188 (352)
+++..++..|+.+ ++.++.+++..++...+||.+.+.+-|
T Consensus 166 ~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~l 205 (207)
T d1a5ta2 166 PPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALF 205 (207)
T ss_dssp CCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCHHHHHHHHHH-----CCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999997-----489999999999997699999999985
No 9
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=98.50 E-value=1.2e-06 Score=60.12 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
...+|+|+++++.||..+++..++++...|.+|..++..|..++|.+..++.. +...... .......+
T Consensus 4 ~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~----~~~~~~~--------~~~~~~~~ 71 (126)
T d1jr3a1 4 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS----PAALGND--------MAAIELRM 71 (126)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC----TTCCCSG--------GGGTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC----CCCCCCC--------HHHHHHHH
T ss_conf 79999999999908999999999999985978999999999999999999863----0000001--------07788999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998649989999999999999999532899989999999999999
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
...++.|+.+.+.+.+..+.++...+|. +..++..++-+++++..
T Consensus 72 ~~~a~~~~~~~L~~~~~il~~~~~~ik~-s~~~r~~~Em~llrll~ 116 (126)
T d1jr3a1 72 RELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMTLLRALA 116 (126)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTT-SSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_conf 9999718999999999999999999731-89858999999999998
No 10
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.27 E-value=3.7e-05 Score=50.13 Aligned_cols=174 Identities=11% Similarity=0.129 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHH----H-------------HCCCCCCCCE
Q ss_conf 4799956996589999999999733566677307762088964189999998----7-------------1788888823
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----I-------------NSTSLFSKKK 84 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~----~-------------~t~slF~~~k 84 (352)
..+||||+.-.-+...+..+.+.... ++...+..+.. ....+... + ...+..+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY------DILEQNASDVR-SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF 125 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC------EEEEECTTSCC-CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH------HHHCCCCCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 44999879999888999999999875------12013443221-168899999887631212101334320145566513
Q ss_pred EEEEECCCC----HHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999847741----045789889885105656079998526543-113566765431121014664420013588988754
Q gi|254780804|r 85 IILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159 (352)
Q Consensus 85 lIii~~~~~----~k~~~~~l~~~~~~~~~~~~li~~a~~l~k-~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~ 159 (352)
++++.+... .......+..... ++...++++......+ -..+ ......+.+.+++..++...++..+.
T Consensus 126 vi~ide~~~~~~~~~~~~~~~~~~~~-~~~~~ii~i~~~~~~~~~~~l------~~~~~~i~f~~~~~~~i~~~l~~i~~ 198 (253)
T d1sxja2 126 VIIMDEVDGMSGGDRGGVGQLAQFCR-KTSTPLILICNERNLPKMRPF------DRVCLDIQFRRPDANSIKSRLMTIAI 198 (253)
T ss_dssp EEEECSGGGCCTTSTTHHHHHHHHHH-HCSSCEEEEESCTTSSTTGGG------TTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77763011111000134677765401-234222111355552113532------44036531145314678899999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 30256675679999962001235568999999751034443488888775310
Q gi|254780804|r 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 (352)
Q Consensus 160 ~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~ 212 (352)
++|+.++++++..|+..++||.+.+.+.|+-.... .+.|+.++|.++...
T Consensus 199 ~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~~---~~~i~~~~~~~~~~~ 248 (253)
T d1sxja2 199 REKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT---TKTINHENINEISKA 248 (253)
T ss_dssp HHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHH---SSCCCTTHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCH
T ss_conf 80999999999999996797099999999999975---998899999999650
No 11
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.03 E-value=0.00034 Score=43.80 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=80.2
Q ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 888239998477410-4578988988510565607999852654311-35667654311210146644200135889887
Q gi|254780804|r 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN-TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 (352)
Q Consensus 80 F~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~-kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~ 157 (352)
-+..++++++++... ......+...++.++.++.+|+.+....+-. +++ ..+..+.+.+++..++..++...
T Consensus 129 ~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~------sR~~~i~~~~~~~~~~~~~l~~i 202 (252)
T d1sxje2 129 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK------SQCLLIRCPAPSDSEISTILSDV 202 (252)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHH------TTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH------CCHHEEEECCCCHHHHHHHHHHH
T ss_conf 787249994243334543111221002213566430001021110025442------10002430353304689999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543025667-567999996200123556899999975
Q gi|254780804|r 158 LLIGQKSIS-KEAKQILLANLGGDRIASRNELQKLSS 193 (352)
Q Consensus 158 ~~~~g~~i~-~~a~~~L~~~~g~d~~~l~~EleKL~l 193 (352)
++.+|+.++ +++++.|+..++||.+.+.+.|+-++.
T Consensus 203 ~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~ 239 (252)
T d1sxje2 203 VTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 239 (252)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9983999896999999999869949999999999997
No 12
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.02 E-value=0.00018 Score=45.65 Aligned_cols=113 Identities=8% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC--CCCEEEEEEHHHH-HCCHHHHHHHHHCCCCCCCCE
Q ss_conf 8875321001013847999569965899999999997335666--7730776208896-418999999871788888823
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH--DPFSLVVLNALEI-QKNISTFWNEINSTSLFSKKK 84 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~--~~~~~~~~~~~e~-~~d~~~l~~~~~t~slF~~~k 84 (352)
|+++..-+.-. .+-|||||++.-.....+..+.+.+..... .++-...-++..+ .++...+.+.+...|.-|++|
T Consensus 4 ~~l~~~i~~~~--~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~K 81 (198)
T d2gnoa2 4 ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRK 81 (198)
T ss_dssp HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSE
T ss_pred HHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999996699--8559988989988899999999998434567998899807767899899999999996175458987
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 999847741-04578988988510565607999852654
Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 (352)
Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~ 122 (352)
+|++.++.. ......+|...++.||.++++|+.+....
T Consensus 82 viIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 82 YVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp EEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHH
T ss_conf 999947310366666478887737898852222069956
No 13
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=97.90 E-value=0.00019 Score=45.52 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHH---HCCCCCCCC
Q ss_conf 78875321001013847999569965899999999997335666773077620889641899999987---178888882
Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSLFSKK 83 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~---~t~slF~~~ 83 (352)
++.++..-++.-..++..++||+..--+...++.+.+.+.... ..+..++..++......-+..- .....+...
T Consensus 22 ~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (213)
T d1l8qa2 22 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV 98 (213)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC---CCEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 9999999867687788579988899839999999998744676---5048844378799999998716626678987621
Q ss_pred EEEEEECCCC---HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 3999847741---04578988988510-565607999852654311--35667654311210146644200135889887
Q gi|254780804|r 84 KIILIENLST---EKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 (352)
Q Consensus 84 klIii~~~~~---~k~~~~~l~~~~~~-~~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~ 157 (352)
.+++|++... .+.....+-.++.. ...+..+|+.+......- ....+...-..+.++...| +.......++.+
T Consensus 99 dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p-~d~~~~~iL~~~ 177 (213)
T d1l8qa2 99 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 177 (213)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECC-CCHHHHHHHHHH
T ss_conf 3010112655058657788999999987631663899548751001343267888861856899788-827999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 543025667567999996200123556899999975
Q gi|254780804|r 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 (352)
Q Consensus 158 ~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l 193 (352)
+...|+.++++++++|+.++ .|.+.+...|..|.+
T Consensus 178 a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~l 212 (213)
T d1l8qa2 178 LKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 212 (213)
T ss_dssp HHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHHC
T ss_conf 99829999999999999856-869989999998634
No 14
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=97.83 E-value=0.0011 Score=40.50 Aligned_cols=176 Identities=9% Similarity=0.084 Sum_probs=110.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHH
Q ss_conf 799956996589999999999733566677307762088964189999998717888888239998477410-4578988
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCL 101 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l 101 (352)
-+||||+----+...++.+.+.+.. +....++... .........+ ...+....++++...... +...+.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~------~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~i~~iDe~~~~~~~~~~~l 107 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAI-EKPGDLAAIL--ANSLEEGDILFIDEIHRLSRQAEEHL 107 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC------CEEEEETTTC-CSHHHHHHHH--HTTCCTTCEEEEETGGGCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC------CEEECCCCCC-CCCHHHHHHH--HHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 3898897998788899999998498------7475468753-4321468998--85103887344311001104478750
Q ss_pred HHHHHC------------------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 988510------------------56560799985265431135667654311210146644200135889887543025
Q gi|254780804|r 102 EEIIIK------------------NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 (352)
Q Consensus 102 ~~~~~~------------------~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 163 (352)
....+. .++..++++.......... +. .......+++.+++...+...+...+...++
T Consensus 108 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~--l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 183 (239)
T d1ixsb2 108 YPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA--PL--LSRFGIVEHLEYYTPEELAQGVMRDARLLGV 183 (239)
T ss_dssp HHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSC--GG--GGGCSEEEECCCCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCCCCCCCC--HH--HCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 0124333212110465565433468997799963068333441--01--0122145675205745555788999998487
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH
Q ss_conf 66756799999620012355689999997510--3444348888877531
Q gi|254780804|r 164 SISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352)
Q Consensus 164 ~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352)
.++++++..++..+++|.+.+.+.++-...|+ .+.+.||.+++.+.+.
T Consensus 184 ~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~~a~~~~~~~It~~~~~~~l~ 233 (239)
T d1ixsb2 184 RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 233 (239)
T ss_dssp CBCHHHHHHHHHHTTSSHHHHHHHHHHHHHHHTTSCCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 65267899999976999999999999999998985799738999999986
No 15
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=97.52 E-value=0.003 Score=37.54 Aligned_cols=175 Identities=9% Similarity=0.057 Sum_probs=105.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHH
Q ss_conf 799956996589999999999733566677307762088964189999998717888888239998477410-4578988
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCL 101 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l 101 (352)
-+||||+.---+...++.+.+.+..+ ...+.+.+. .....+...+ ..++.+.++.+...... +...+.+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~------~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ide~~~~~~~~~~~l 106 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVL-VKQGDMAAIL---TSLERGDVLFIDEIHRLNKAVEELL 106 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC------EEEEETTTC-CSHHHHHHHH---HHCCTTCEEEEETGGGCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC------CCCCCCCCC-CCHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 48987999973889999998503888------533257442-2488899998---7543588247778988406777642
Q ss_pred HHHHH------------------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98851------------------056560799985265431135667654311210146644200135889887543025
Q gi|254780804|r 102 EEIII------------------KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 (352)
Q Consensus 102 ~~~~~------------------~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 163 (352)
..... .+...+++|+......... ... .......+.+.+++..++...+...+...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~--~~~--~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (238)
T d1in4a2 107 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS--SPL--RSRFGIILELDFYTVKELKEIIKRAASLMDV 182 (238)
T ss_dssp HHHHHTSCCCC---------------CCCEEEEEESCGGGSC--HHH--HTTCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC--CCC--EEEEEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 140244145445437600244445788769999547875555--431--1330079984478778777777776530110
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH
Q ss_conf 66756799999620012355689999997510--3444348888877531
Q gi|254780804|r 164 SISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIIC 211 (352)
Q Consensus 164 ~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~ 211 (352)
.++++++..++..+++|.+.+.+-++....++ .+...||.+++.+.+.
T Consensus 183 ~~~~~~l~~i~~~s~gd~R~ai~~l~~~~~~~~~~~~~~it~~~~~~al~ 232 (238)
T d1in4a2 183 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 232 (238)
T ss_dssp CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 02579999999967998999999999999999985699628999999988
No 16
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=96.21 E-value=0.036 Score=30.39 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCH--------------------
Q ss_conf 887532100101384799956996589999999999733566677307762088964189--------------------
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-------------------- 67 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~-------------------- 67 (352)
++|...-++.-......+|||+----+...++.+.+.+..... +.......... ...
T Consensus 30 ~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 106 (276)
T d1fnna2 30 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT--ARFVYINGFIY-RNFTAIIGEIARSLNIPFPRRGL 106 (276)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC--CEEEEEETTTC-CSHHHHHHHHHHHTTCCCCSSCC
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC--CCEEEECCHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998578988881688898999899999999999754468--85787323001-12466654567764334555325
Q ss_pred ------HHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHH----CCCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ------999998717888888239998477410-457898898851----056560799985265431135667654311
Q gi|254780804|r 68 ------STFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIII----KNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 (352)
Q Consensus 68 ------~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~----~~~~~~~li~~a~~l~k~~kl~k~~e~~~~ 136 (352)
..+.+.... ......+++...... ......+..... .......+|..+........+..-....-.
T Consensus 107 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~ 183 (276)
T d1fnna2 107 SRDEFLALLVEHLRE---RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 183 (276)
T ss_dssp CHHHHHHHHHHHHHH---TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHC
T ss_conf 435789999998752---06543320368887535431068888740443356524886258764544311303665511
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--CCCCCCCCH
Q ss_conf 2101466442001358898875430--2566756799999620---------01235568999999751--034443488
Q gi|254780804|r 137 VLAISCYPDNKIHLMDLIEESLLIG--QKSISKEAKQILLANL---------GGDRIASRNELQKLSSY--CLEDILITE 203 (352)
Q Consensus 137 ~~~v~~~~~~~~~l~~~i~~~~~~~--g~~i~~~a~~~L~~~~---------g~d~~~l~~EleKL~ly--~~~~~~It~ 203 (352)
...+.+.+.+..++...+..+++.. +..+++++++.+++.+ ++|.+.+.+-+++-... ..+.+.|+.
T Consensus 184 ~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~ 263 (276)
T d1fnna2 184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAP 263 (276)
T ss_dssp TCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred CHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 01103441238889999999999852456663789999999700144465538999999999999999999818998499
Q ss_pred HHHHHHHH
Q ss_conf 88877531
Q gi|254780804|r 204 QHVKDIIC 211 (352)
Q Consensus 204 ~dI~~~v~ 211 (352)
+||++...
T Consensus 264 edv~~A~~ 271 (276)
T d1fnna2 264 EDVRKSSK 271 (276)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 17
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=93.72 E-value=0.18 Score=25.66 Aligned_cols=196 Identities=18% Similarity=0.218 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHH---CCCC----
Q ss_conf 788753210010138479995699658999999999973356667730776208896418999999871---7888----
Q gi|254780804|r 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN---STSL---- 79 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~---t~sl---- 79 (352)
+++++....-.....+ ++++|+.---+...++.+.. .......++. ..+...+ +.......+. ...+
T Consensus 10 ~~~~~~~~~~a~~~~p-vlI~Ge~GtGK~~~A~~ih~-~s~~~~~~~~--~~~~~~~--~~~~~~~~lfg~~~~~~~~~~ 83 (247)
T d1ny5a2 10 KEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK-LSDRSKEPFV--ALNVASI--PRDIFEAELFGYEKGAFTGAV 83 (247)
T ss_dssp HHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH-HSTTTTSCEE--EEETTTS--CHHHHHHHHHCBCTTSSTTCC
T ss_pred HHHHHHHHHHHCCCCC-EEEECCCCCCHHHHHHHHHH-HCCCCCCCCC--CCHHHHH--HHCCCHHHHCCCCCCCCCCCC
T ss_conf 9999999999688997-89989998179999999999-6587653320--2102343--101128876285357767753
Q ss_pred ------C--CCCEEEEEECCCC-HHHHHHHHHHHHHC-----------CCCCEEEEEEECC-CCC---CHHHHH-HHHHH
Q ss_conf ------8--8823999847741-04578988988510-----------5656079998526-543---113566-76543
Q gi|254780804|r 80 ------F--SKKKIILIENLST-EKKVLDCLEEIIIK-----------NICNHIIIIKSNE-IKK---NNTLRK-IAEKF 134 (352)
Q Consensus 80 ------F--~~~klIii~~~~~-~k~~~~~l~~~~~~-----------~~~~~~li~~a~~-l~k---~~kl~k-~~e~~ 134 (352)
| ++.-.+++++... .......|..++.. ...++.+|+.+.. +.. ...++. ++..-
T Consensus 84 ~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l 163 (247)
T d1ny5a2 84 SSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL 163 (247)
T ss_dssp SCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH
T ss_pred CCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCEEECCCCCCEECCEEEEEECCCCHHHHHHCCCCCHHHHHHC
T ss_conf 35588877238997999583759999999999999759878789997023375999933979999988599748888640
Q ss_pred HHHHHCCCCCCC--CHHHHHHHHHHHH----HCCC---CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 112101466442--0013588988754----3025---66756799999620-012355689999997510344434888
Q gi|254780804|r 135 TSVLAISCYPDN--KIHLMDLIEESLL----IGQK---SISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILITEQ 204 (352)
Q Consensus 135 ~~~~~v~~~~~~--~~~l~~~i~~~~~----~~g~---~i~~~a~~~L~~~~-g~d~~~l~~EleKL~ly~~~~~~It~~ 204 (352)
....+...|+. ..++..++...+. +.|. .++++|++.|..+- .||...+.+-++.+.+.+.+ ..|+.+
T Consensus 164 -~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~~~-~~I~~~ 241 (247)
T d1ny5a2 164 -GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG-KFIDRG 241 (247)
T ss_dssp -TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS-SEECHH
T ss_pred -CEEEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEECHH
T ss_conf -810655897011624576640013433466507877888999999998489998999999999999981898-858879
Q ss_pred HHHHHH
Q ss_conf 887753
Q gi|254780804|r 205 HVKDII 210 (352)
Q Consensus 205 dI~~~v 210 (352)
|+-.++
T Consensus 242 dl~~l~ 247 (247)
T d1ny5a2 242 ELSCLV 247 (247)
T ss_dssp HHHHHC
T ss_pred HCCCCC
T ss_conf 800219
No 18
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=93.36 E-value=0.21 Score=25.27 Aligned_cols=174 Identities=10% Similarity=0.043 Sum_probs=92.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHC--------CHHHHHHHHHCCCCCCCCEEEEEECCCC-
Q ss_conf 7999569965899999999997335666773077620889641--------8999999871788888823999847741-
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--------NISTFWNEINSTSLFSKKKIILIENLST- 93 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~--------d~~~l~~~~~t~slF~~~klIii~~~~~- 93 (352)
-+|+||+.---+...++.+.+... ..+..++..++.. ....+++.+... .+-+|++++...
T Consensus 44 giLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~----~p~Ii~iDeid~l 113 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRH----APCIVFIDEIDAV 113 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTS----SSEEEEEETHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC------CCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHC----CCEEEEEECHHHH
T ss_conf 488766898883599999998739------977997869964624538999999999999976----9979999773664
Q ss_pred -------H-------HHHHHHHHHHHHC--CCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf -------0-------4578988988510--5656079998526543-113566765431121014664420013588988
Q gi|254780804|r 94 -------E-------KKVLDCLEEIIIK--NICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156 (352)
Q Consensus 94 -------~-------k~~~~~l~~~~~~--~~~~~~li~~a~~l~k-~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~ 156 (352)
. ......+...+.. ..+.+++|..+...+. ...+.. ....-..+.+.+++..+....++.
T Consensus 114 ~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R---~~Rf~~~i~~~~P~~~eR~~il~~ 190 (247)
T d1ixza_ 114 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLR---PGRFDRQIAIDAPDVKGREQILRI 190 (247)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGS---TTSSCEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCC---CCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 74678998887589999999999996387778998999807994006996758---987857999799699999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 75430256675679999962001----23556899999975103444348888877531
Q gi|254780804|r 157 SLLIGQKSISKEAKQILLANLGG----DRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 157 ~~~~~g~~i~~~a~~~L~~~~g~----d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
++...+.. +...+..|++.+.+ |...+.++--..+. ..++..|+.+|++..++
T Consensus 191 ~l~~~~~~-~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~-~~~~~~i~~~d~~~A~~ 247 (247)
T d1ixza_ 191 HARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAA-REGRRKITMKDLEEAAS 247 (247)
T ss_dssp HHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH-HTTCSSBCHHHHHHHTC
T ss_pred HHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHC
T ss_conf 75065776-54689999977889889999999999999999-86888749999998649
No 19
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=91.98 E-value=0.32 Score=24.07 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=52.3
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHH
Q ss_conf 014664420013588988754302--566756799999620------01235568999999751--03444348888877
Q gi|254780804|r 139 AISCYPDNKIHLMDLIEESLLIGQ--KSISKEAKQILLANL------GGDRIASRNELQKLSSY--CLEDILITEQHVKD 208 (352)
Q Consensus 139 ~v~~~~~~~~~l~~~i~~~~~~~g--~~i~~~a~~~L~~~~------g~d~~~l~~EleKL~ly--~~~~~~It~~dI~~ 208 (352)
.+.+.+.+..++...++.+++... ..++++++.++++.+ .+|.+.+.+-+..-... ..+.+.||.++|++
T Consensus 203 ~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~ 282 (287)
T d1w5sa2 203 KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 282 (287)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 65225775999999876667775246877999999999997230367889999999999999999984999879999999
Q ss_pred HHHC
Q ss_conf 5310
Q gi|254780804|r 209 IICD 212 (352)
Q Consensus 209 ~v~~ 212 (352)
.+..
T Consensus 283 A~~e 286 (287)
T d1w5sa2 283 AVSE 286 (287)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 9846
No 20
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=88.33 E-value=0.64 Score=22.08 Aligned_cols=60 Identities=12% Similarity=-0.108 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
Q ss_conf 898875430256-6756799999620012355689999997510344434888887753101
Q gi|254780804|r 153 LIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 (352)
Q Consensus 153 ~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~ 213 (352)
-|+..++..|+. ++.++.+.|.+.+..-...+.++..+++-.+ +.++||.+||...+-..
T Consensus 14 ~i~Riar~~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~ha-kRKTvt~~DV~~Alkr~ 74 (82)
T d2huec1 14 AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQ 74 (82)
T ss_dssp HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHC
T ss_conf 99999997695413299999999999999999999999998771-88758799999999966
No 21
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=86.04 E-value=0.85 Score=21.25 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 889887543025-66756799999620012355689999997510344434888887753
Q gi|254780804|r 152 DLIEESLLIGQK-SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 152 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352)
.-|+..+...|+ +++++++..|++-+..-...+.||--|..-- +.+.++|.+||+..+
T Consensus 10 esik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrh-skR~~Ltt~Did~AL 68 (70)
T d1tafb_ 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH-AKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHH
T ss_conf 89999999859888899999999999999999999999999997-565758699899887
No 22
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=85.98 E-value=0.86 Score=21.22 Aligned_cols=175 Identities=9% Similarity=0.035 Sum_probs=89.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--------CCHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 4799956996589999999999733566677307762088964--------18999999871788888823999847741
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--------KNISTFWNEINSTSLFSKKKIILIENLST 93 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--------~d~~~l~~~~~t~slF~~~klIii~~~~~ 93 (352)
.-+|+||+.---+...++.+.+.+.. .+..++..++. .....+++.+... .+-++++++...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~~------~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~----~P~il~iDeiD~ 115 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEMFVGVGASRVRDMFEQAKKA----APCIIFIDEIDA 115 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC------CEEEECSCSSTTSCCCCCHHHHHHHHHHHHTT----CSEEEEETTHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCC------CEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHC----CCEEEEEECHHH
T ss_conf 86786689988822899999998299------87998869942600107899999999999975----998999977566
Q ss_pred ---------------HHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHH-HHHHCCCCCCCCHHHHHHHH
Q ss_conf ---------------04578988988510--5656079998526543113566765431-12101466442001358898
Q gi|254780804|r 94 ---------------EKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAEKFT-SVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 94 ---------------~k~~~~~l~~~~~~--~~~~~~li~~a~~l~k~~kl~k~~e~~~-~~~~v~~~~~~~~~l~~~i~ 155 (352)
.......+...+.. ..+.+++|..+...+. +-..+-... .-..+.+.+++..+-...++
T Consensus 116 l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~---ld~al~R~gRfd~~i~i~~P~~~~R~~il~ 192 (256)
T d1lv7a_ 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV---LDPALLRPGRFDRQVVVGLPDVRGREQILK 192 (256)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT---SCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 57567898888748999999999999538777799899980799310---798576898787798779959999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 8754302566756799999620----0123556899999975103444348888877531
Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANL----GGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~----g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
.+.++.++. ....+..|++.+ |.|...+.++---.+. ..+++.|+.+|++..+.
T Consensus 193 ~~l~~~~~~-~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~-~~~~~~i~~~d~~~Al~ 250 (256)
T d1lv7a_ 193 VHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAA-RGNKRVVSMVEFEKAKD 250 (256)
T ss_dssp HHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH-HTTCSSBCHHHHHHHHH
T ss_pred HHCCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHH
T ss_conf 842599868-65699999986899899999999999999999-82898348999999999
No 23
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=78.99 E-value=1.3 Score=20.12 Aligned_cols=51 Identities=6% Similarity=-0.057 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 11467888764102369999999853110001458999999999999999830256898
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~ 275 (352)
.+..|..++-..|...|+.++.+++..|++|..|. |+|..+... +.|..++
T Consensus 5 ~iSA~~KSiRgSD~dAAly~larml~~Gedp~~i~-------RRli~~AsE-DIGlAdp 55 (163)
T d3ctda1 5 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIF-------RRLLISACE-DIGLADP 55 (163)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHH-------HHHHHHHHH-TTGGGST
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHH-HHCCCCH
T ss_conf 89999988743893599999999997698657999-------999999977-6413680
No 24
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=78.72 E-value=1.6 Score=19.43 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=82.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHC------------------CHHHHHHHHHCCCCCCCCE
Q ss_conf 7999569965899999999997335666773077620889641------------------8999999871788888823
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK------------------NISTFWNEINSTSLFSKKK 84 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~------------------d~~~l~~~~~t~slF~~~k 84 (352)
++||+|+.---+.+.++.+.+.+.... -+..+++..+... ....+.+.+...| ..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~---~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p----~~ 127 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP----YS 127 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS----SE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC----CC
T ss_conf 999978886248999999999835887---53488731554542156651489998767466784899998499----83
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHC-----------CCCCEEEEEEECCCCCCH--------------------HHHHHHH
Q ss_conf 999847741-04578988988510-----------565607999852654311--------------------3566765
Q gi|254780804|r 85 IILIENLST-EKKVLDCLEEIIIK-----------NICNHIIIIKSNEIKKNN--------------------TLRKIAE 132 (352)
Q Consensus 85 lIii~~~~~-~k~~~~~l~~~~~~-----------~~~~~~li~~a~~l~k~~--------------------kl~k~~e 132 (352)
+|++++... .....+.|..++.. ...++++|+. .++.... .+.+.|.
T Consensus 128 Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~t-snlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~ 206 (315)
T d1qvra3 128 VILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT-SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 206 (315)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE-CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred EEEEEHHHHCCHHHHHHHHHHHCCCCEECCCCCEECCCCEEEEEE-CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 799714754078999899998613834279996853754289874-2457677764001122045556778888886238
Q ss_pred H--HHH-HHHCCCCCCCCHHHHHHHHHHH-------HHC--CCCCCHHHHHHHHHHH-HHHH--HHHHHHHHHH
Q ss_conf 4--311-2101466442001358898875-------430--2566756799999620-0123--5568999999
Q gi|254780804|r 133 K--FTS-VLAISCYPDNKIHLMDLIEESL-------LIG--QKSISKEAKQILLANL-GGDR--IASRNELQKL 191 (352)
Q Consensus 133 ~--~~~-~~~v~~~~~~~~~l~~~i~~~~-------~~~--g~~i~~~a~~~L~~~~-g~d~--~~l~~EleKL 191 (352)
. -.. -..++|.|.+..++..++...+ ... .+.+++++..+|++.. ...+ +.+...+++.
T Consensus 207 pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~ 280 (315)
T d1qvra3 207 PEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 280 (315)
T ss_dssp HHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHH
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 87872178054321024543689999999999999872420220669999999994889877821089999999
No 25
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=78.05 E-value=1.7 Score=19.31 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 11467888764102369999999853110001458999999999999999830256898999986089999768999999
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~ 296 (352)
.+..|..++-..|...|+.++-+++..|++|..| +|+|+.+... +.+..++.... ......+
T Consensus 7 ~iSA~~KSiRgSD~dAaly~larml~~GeDp~~i-------~RRl~~~AsE-DIGlAdp~al~----------~a~~~~~ 68 (184)
T d3bgea1 7 LISALHKSVRGSAPDAALYWYARILTAGGDPLYV-------ARRLLAIASE-DVGNADPRAMQ----------VALAAWD 68 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHH-------HHHHHHHHHH-TTGGGCTTHHH----------HHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHH-HCCCCCCHHHH----------HHHHHHH
T ss_conf 9999999874389149999999999748986899-------9999999876-43788815879----------9999999
Q ss_pred HHHCCCHHHHHHHHHH
Q ss_conf 9864998999999999
Q gi|254780804|r 297 SLRIWNKNLVRETLHK 312 (352)
Q Consensus 297 q~~~~s~~~l~~~l~~ 312 (352)
++.+.+.++.+-.|.-
T Consensus 69 a~~~iG~PE~~i~Laq 84 (184)
T d3bgea1 69 CFTRVGAYEGERAIAQ 84 (184)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
T ss_conf 9998188068899999
No 26
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.10 E-value=2 Score=18.78 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 11146788876410236999999985-31100014589999999999999998302568989999860899997689999
Q gi|254780804|r 216 LYIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 216 ~~if~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
..+.++++.+..|+..+|...++++. ..|.++.-|+..|.+.+. ..
T Consensus 5 ~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~----------~~----------------------- 51 (95)
T d1iqpa1 5 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVF----------NL----------------------- 51 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGG----------GS-----------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------HC-----------------------
T ss_conf 999999999984999999999999998849999999999999996----------16-----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99986499899999999999999995328999899999999999996310
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~ 344 (352)
.++.....+++..+.++|..+-. |.++..-+..++-.+|..++|
T Consensus 52 -----~~~~~~k~~ll~~la~~d~rL~~-G~~e~iQL~alla~~~~i~~~ 95 (95)
T d1iqpa1 52 -----PIEEPKKVLLADKIGEYNFRLVE-GANEIIQLEALLAQFTLIGKK 95 (95)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHCC
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCC
T ss_conf -----99989999999999999999986-898599999999999997459
No 27
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.82 E-value=2.2 Score=18.58 Aligned_cols=85 Identities=12% Similarity=0.000 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1146788876410236999999985-311000145899999999999999983025689899998608999976899999
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~ 295 (352)
.+-++++.+.+|+..+|...++++. ..|.++.-|+..|.+.... ... +
T Consensus 5 ~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~---------~~~--~-------------------- 53 (95)
T d1sxjc1 5 DLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED---------YEL--Q-------------------- 53 (95)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTT---------SCC--S--------------------
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------CCC--C--------------------
T ss_conf 999999999809999999999999998599999999999999987---------579--9--------------------
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99864998999999999999999953289998999999999999
Q gi|254780804|r 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 296 ~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
+...-.+++..+.++|..+-. |.++..-+.-++-.++
T Consensus 54 ------~~~~k~~ll~~la~~e~rL~~-G~~e~lQL~~lla~~~ 90 (95)
T d1sxjc1 54 ------NEETRVHLLTKLADIEYSISK-GGNDQIQGSAVIGAIK 90 (95)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
T ss_conf ------899999999999999999986-8981878999999999
No 28
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=71.52 E-value=2.4 Score=18.23 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
Q ss_conf 25667567999996200123556899999975103444348888877531012
Q gi|254780804|r 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 (352)
Q Consensus 162 g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~ 214 (352)
+..++.+|.+.+.+.++.-...+..|--.++-+. ++++|+.+||...+....
T Consensus 17 ~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~-~rKTi~~edi~~a~~~~~ 68 (151)
T d1f1ea_ 17 ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS-GKKTLMEEHLKALADVLM 68 (151)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHCC
T ss_conf 4564789999999999999999999999999883-987477999999987326
No 29
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=69.54 E-value=2.7 Score=17.95 Aligned_cols=55 Identities=15% Similarity=0.028 Sum_probs=44.0
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 8754302-5667567999996200123556899999975103444348888877531
Q gi|254780804|r 156 ESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 156 ~~~~~~g-~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
..++..| .+++.++...+...+..-...+.++-.+.+.. .++++|+.+||...+-
T Consensus 11 ri~k~~~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~-~kRkTi~~~DV~~Alk 66 (68)
T d1htaa_ 11 RIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKH-AGRKTIKAEDIELARK 66 (68)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
T ss_conf 9998789503219999999999999999999999999999-1888078999999997
No 30
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=61.98 E-value=3.7 Score=17.01 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 (352)
Q Consensus 215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~ 294 (352)
+.-+.++++++..|+...+...++.+..+|.+...|+..|.+.+. ....
T Consensus 3 ~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv---------~~~~---------------------- 51 (91)
T d1sxjd1 3 HDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI---------TNDN---------------------- 51 (91)
T ss_dssp SHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH---------HCSS----------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HCCC----------------------
T ss_conf 899999999988499999999999999938999999999999997---------6379----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998649989999999999999999532899989999999999999
Q gi|254780804|r 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
++.....+++..+.++|..+-. |.++..-+..++.++++
T Consensus 52 ------i~~~~k~~i~~~la~~d~rL~~-G~~e~lQL~~lla~i~~ 90 (91)
T d1sxjd1 52 ------FDTNFKNQISWLLFTTDSRLNN-GTNEHIQLLNLLVKISQ 90 (91)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf ------9999999999999999999984-89839999999999871
No 31
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.36 E-value=5 Score=16.18 Aligned_cols=42 Identities=14% Similarity=-0.002 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01358898875430256-6756799999620012355689999997
Q gi|254780804|r 148 IHLMDLIEESLLIGQKS-ISKEAKQILLANLGGDRIASRNELQKLS 192 (352)
Q Consensus 148 ~~l~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~d~~~l~~EleKL~ 192 (352)
..+..-|.+..+++|+. ++++++.++...+.. .+++-+|||+
T Consensus 6 ~~Lq~ri~~I~~k~Gl~e~~~dV~~lISHA~Qe---RLk~lvEKls 48 (50)
T d1h3oa_ 6 APLQRRILEIGKKHGITELHPDVVSYVSHATQQ---RLQNLVEKIS 48 (50)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 999999999998849876678999998899999---9999999871
No 32
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=52.59 E-value=5.3 Score=15.99 Aligned_cols=42 Identities=2% Similarity=-0.042 Sum_probs=34.6
Q ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHH
Q ss_conf 2211146-78887641023699999998531100014589-999
Q gi|254780804|r 214 HVLYIEE-IINATIQGKIYNAIMLADFFLASKMPSHALLH-GFL 255 (352)
Q Consensus 214 ~~~~if~-L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~-~L~ 255 (352)
++..+.+ |..|+..|+...+.....+.+..|.+|..|+. .|.
T Consensus 5 r~~~v~ErL~~AII~G~~d~v~e~v~~al~~g~~p~~Ii~~~Li 48 (90)
T d3bula1 5 RSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPCEVIEGPLM 48 (90)
T ss_dssp GGSCHHHHHHHHHHHTCCTTHHHHHHHHHHHSSSTTHHHHTHHH
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 34999999999998276987998799899860219999998888
No 33
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=50.59 E-value=5.7 Score=15.79 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5667567999996200123556899999975103444348888877531
Q gi|254780804|r 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 (352)
Q Consensus 163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~ 211 (352)
.+|+.+|...+...+..=...+..+....+... ++++|+.+||...+-
T Consensus 18 ~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~-~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 18 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHA-GRKTVKVEDIKLAIK 65 (66)
T ss_dssp SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHH
T ss_conf 140888999999999999999999999999980-898799999999985
No 34
>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=48.23 E-value=6.2 Score=15.55 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 1146788876410236999999985311000145899999999999999983025689899
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~ 277 (352)
.+..|..++-.+|...|+..+-+++..| +|..| +|+|+.+... +.|..++..
T Consensus 6 ~iSA~~KSiRgSD~daAly~larml~~G-d~~~i-------~RRL~~~AsE-DIGlAdp~a 57 (186)
T d2r9ga1 6 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASI-------CRRLMVIGYE-DIGLGNPAA 57 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHH-------HHHHHHHHHH-TTGGGCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHH-------HHHHHHHHHH-HHHCCCHHH
T ss_conf 9999999984488769999999999859-92199-------9999999987-752248479
No 35
>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=47.98 E-value=6.2 Score=15.53 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 1146788876410236999999985311000145899999999999999983025689899
Q gi|254780804|r 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 (352)
Q Consensus 217 ~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~ 277 (352)
.+..+..++-.+|...|+.++.+++..| +|..| +|+|..+... +.+..++..
T Consensus 3 ~iSA~~KSiRgSD~dAAlywlarml~~G-D~~~i-------~RRLi~~AsE-DIGlAdp~a 54 (88)
T d2qw6a1 3 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASI-------CRRLMVIGYE-DIGLGNPAA 54 (88)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHH-------HHHHHHHHHH-TC---CHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCC-CHHHH-------HHHHHHHHHH-HHHCCCHHH
T ss_conf 8899999987589029999999998869-90689-------9999999988-762147579
No 36
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=45.12 E-value=6.9 Score=15.24 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6410236999999985311000145899999
Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 (352)
Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~ 256 (352)
+.+|..+|++.++.+...|+=|..=|.+|.+
T Consensus 2 L~rDv~RaieLle~Lq~sgevp~~KL~aLqk 32 (50)
T d1zl8a1 2 LERDVQRILELMEHVQKTGEVNNAKLASLQQ 32 (50)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 0568999999999998869998699999999
No 37
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=39.89 E-value=8.2 Score=14.72 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 8898875430--256675679999962001235568999999751034443488888775310122
Q gi|254780804|r 152 DLIEESLLIG--QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 (352)
Q Consensus 152 ~~i~~~~~~~--g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~ 215 (352)
.+|...+++- +..|+..|+..+-..+..-...+..|--+|+-|. .+.+||..+|+..+---..
T Consensus 7 ~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~-kr~TitsreIqtAvrL~LP 71 (92)
T d1tzyb_ 7 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN-KRSTITSREIQTAVRLLLP 71 (92)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCC
T ss_conf 9999999861898875699999999999999999999999999873-8998819999998999784
No 38
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.45 E-value=8.7 Score=14.57 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6410236999999985311000145899999
Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 (352)
Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~ 256 (352)
+.+|..+|++.++.+...|+=|..=|.+|.+
T Consensus 3 L~rDv~RaieLle~LQ~~gevp~~KL~aLqk 33 (57)
T d1y74a1 3 LERDVSRAVELLERLQRSGELPPQKLQALQR 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 0688999999999998869998399999999
No 39
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=26.42 E-value=14 Score=13.28 Aligned_cols=179 Identities=8% Similarity=0.098 Sum_probs=88.5
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCC----CCCCCCEEEEEEHHHH------HCCHHH----HHHHHHCCCCCCCCEEEEEE
Q ss_conf 999569965899999999997335----6667730776208896------418999----99987178888882399984
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISI----TYHDPFSLVVLNALEI------QKNIST----FWNEINSTSLFSKKKIILIE 89 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~----~~~~~~~~~~~~~~e~------~~d~~~----l~~~~~t~slF~~~klIii~ 89 (352)
.++.|+.---+...++.+.+.+.. +......+..++...+ ..+++. +++++.. .+.-+++++
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~----~~~iIlfiD 117 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFID 117 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEET
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHC----CCCCEEEEC
T ss_conf 6798889886779999999999817845000354127864056750676300589999999998612----678468843
Q ss_pred CCCC----------HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHH
Q ss_conf 7741----------045789889885105656079998526543113566765431----12101466442001358898
Q gi|254780804|r 90 NLST----------EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT----SVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 90 ~~~~----------~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~----~~~~v~~~~~~~~~l~~~i~ 155 (352)
+... .....+.|..++... +..+|..... ...++.+++.. ....|...+++..+....++
T Consensus 118 eih~l~~~g~~~g~~~d~a~~Lkp~L~rg--~i~vIgatT~----eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~ 191 (268)
T d1r6bx2 118 EIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTY----QEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 191 (268)
T ss_dssp TTTTTTTSCCSSSCHHHHHHHHSSCSSSC--CCEEEEEECH----HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHHCC--CCEEEEECCH----HHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 36988627777886411798764887479--8759995799----99999986167888652100368989999999999
Q ss_pred H----HHHHCCCCCCHHHHHHHHHHHHH---HHHHHHHHH---HHHHHH------CCCCCCCCHHHHHHHHHC
Q ss_conf 8----75430256675679999962001---235568999---999751------034443488888775310
Q gi|254780804|r 156 E----SLLIGQKSISKEAKQILLANLGG---DRIASRNEL---QKLSSY------CLEDILITEQHVKDIICD 212 (352)
Q Consensus 156 ~----~~~~~g~~i~~~a~~~L~~~~g~---d~~~l~~El---eKL~ly------~~~~~~It~~dI~~~v~~ 212 (352)
. +-+.+++.++++|+...++.+.- |...=...+ +-.+.+ ...+..|+.+||+.++..
T Consensus 192 ~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~~ 264 (268)
T d1r6bx2 192 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 264 (268)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 8668885268778574789999999985604788984899999999999985002467664799999999999
No 40
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.01 E-value=14 Score=13.23 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 1358898875430256675679999962001235568999999751034443488888775310122
Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 (352)
Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~ 215 (352)
.+.+.++.-.. +..++.+|...+...+.-=...+..+-...+.- .++++|+.+||...+....-
T Consensus 9 ~I~kI~K~~~~--~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~-~~RkTi~~~Dv~~Al~~~~f 72 (135)
T d1jfib_ 9 AINKMIKETLP--NVRVANDARELVVNCCTEFIHLISSEANEICNK-SEKKTISPEHVIQALESLGF 72 (135)
T ss_dssp HHHHHHHHHST--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCC
T ss_conf 99999862896--013019999999999999999999999999998-18781569999999998690
No 41
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.84 E-value=15 Score=13.09 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=64.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--------CCHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 4799956996589999999999733566677307762088964--------18999999871788888823999847741
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--------KNISTFWNEINSTSLFSKKKIILIENLST 93 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--------~d~~~l~~~~~t~slF~~~klIii~~~~~ 93 (352)
.-+|+||+-.--+...++.+.+.+.. .+..++..++. .....+++.+... .+-+|++++...
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~~~------~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~----~p~il~ideid~ 111 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDS 111 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHTTC------EEEEECHHHHHTSCTTTHHHHHHHHHHHHHHT----CSEEEEESSGGG
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCC------CEEEEEHHHHHHCCCCCHHHHHHHHHHHHHHC----CCCCEEHHHHHH
T ss_conf 75788789987630477887877189------47998879952531651589999999999863----984356875463
Q ss_pred H---------------HHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 0---------------4578988988510--56560799985265431135667654-3112101466442001358898
Q gi|254780804|r 94 E---------------KKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 94 ~---------------k~~~~~l~~~~~~--~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~ 155 (352)
. ......+..++.. .....++|..+...+. +-..+.. ......+.+.+++..+-...++
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~gRf~~~i~~~~p~~~~R~~il~ 188 (265)
T d1r7ra3 112 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI---IDPAILRPGRLDQLIYIPLPDEKSRVAILK 188 (265)
T ss_dssp TCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT---TSCGGGSSTTSEEEEECCCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH---CCHHHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 24557876788737999999999999628677799899991799222---799780787764799956607888999999
Q ss_pred HHHHHCC
Q ss_conf 8754302
Q gi|254780804|r 156 ESLLIGQ 162 (352)
Q Consensus 156 ~~~~~~g 162 (352)
..+++..
T Consensus 189 ~~l~~~~ 195 (265)
T d1r7ra3 189 ANLRKSP 195 (265)
T ss_dssp HHTTCC-
T ss_pred HHHCCCC
T ss_conf 9960577
No 42
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.88 E-value=16 Score=12.85 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=75.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHC--------CHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 47999569965899999999997335666773077620889641--------8999999871788888823999847741
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--------NISTFWNEINSTSLFSKKKIILIENLST 93 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~--------d~~~l~~~~~t~slF~~~klIii~~~~~ 93 (352)
.-+|+||+.---+...++.+.+.... .+..++..++.. ....+++.+... ...+|++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~~------~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~----~p~il~iDeid~ 108 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEIMSKLAGESESNLRKAFEEAEKN----APAIIFIDELDA 108 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTC------EEEEECHHHHTTSCTTHHHHHHHHHHHHHHHT----CSEEEEESSGGG
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCC------EEEEEECHHHCCCCCCCHHHHHHHHHHHHHHC----CCEEEEEHHHHH
T ss_conf 64687669988830899999987488------37999730430254561788889999999864----994998521113
Q ss_pred H------------HHHHHHHHHHHH--CCCCCEEEEEEECCCCCCHHHHHHHHHHH-HHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 0------------457898898851--05656079998526543113566765431-12101466442001358898875
Q gi|254780804|r 94 E------------KKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVLAISCYPDNKIHLMDLIEESL 158 (352)
Q Consensus 94 ~------------k~~~~~l~~~~~--~~~~~~~li~~a~~l~k~~kl~k~~e~~~-~~~~v~~~~~~~~~l~~~i~~~~ 158 (352)
. ......+..... ...+.+++|..+...+.-.. .+.... .-..+.+..++..+-...++.++
T Consensus 109 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~---al~r~gRfd~~i~~~~P~~~~R~~il~~~l 185 (258)
T d1e32a2 109 IAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP---ALRRFGRFDREVDIGIPDATGRLEILQIHT 185 (258)
T ss_dssp TCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCG---GGTSTTSSCEEEECCCCCHHHHHHHHHHTT
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCH---HHHHCCCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 22578877770689998775001101234688117975799310252---454246302323789999889998732204
Q ss_pred HHCCCCCCHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 4302566756799999620----01235568999
Q gi|254780804|r 159 LIGQKSISKEAKQILLANL----GGDRIASRNEL 188 (352)
Q Consensus 159 ~~~g~~i~~~a~~~L~~~~----g~d~~~l~~El 188 (352)
+...+.-+ ..+..|++.+ |.|...+.++-
T Consensus 186 ~~~~~~~~-~~~~~la~~t~G~s~adl~~lv~~A 218 (258)
T d1e32a2 186 KNMKLADD-VDLEQVANETHGHVGADLAALCSEA 218 (258)
T ss_dssp TTSCBCTT-CCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCC-CCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 57633455-3034444206677899999999999
Done!