BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] gi|254040481|gb|ACT57277.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA Sbjct: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE Sbjct: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD Sbjct: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF Sbjct: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI Sbjct: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT Sbjct: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 >gi|222087924|ref|YP_002546462.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84] gi|221725372|gb|ACM28528.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84] Length = 345 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/357 (31%), Positives = 193/357 (54%), Gaps = 24/357 (6%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M+ I+SH+F +Q + +N + +F+ YG D+GL+ E Q + DPFSL+ Sbjct: 1 MSEIKSHEFDGFLQNAARN----YRLFVIYGPDRGLVSERAGQVAGKTGVDLKDPFSLIK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN-HIIII 116 L+ ++Q + +E+N+ LF +K++ I + EK ++D L+ II N N +II Sbjct: 57 LDVGDLQNDAGRLLDEVNAIGLFGGEKLVWIRGAANEKALIDSLQ-IIADNPPNASFVII 115 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 ++ ++KK + LRK+AE + + CY D+ L LI+ L IS A+Q+LL Sbjct: 116 EAGDLKKGSGLRKVAEASRKIATVPCYADDGRALNSLIDTELASENLRISPAARQMLLEL 175 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 LGGDRIASRNE++KL+ YC + I E HV DII D + ++ ++A ++G Sbjct: 176 LGGDRIASRNEVRKLALYCRGEGTIEEGHVADIIGDASAISADDAVDAILKGD------- 228 Query: 237 ADFFL-------ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 +D FL ASK +L G L++FQLL+ + + + +++Q +++ Sbjct: 229 SDAFLHAMQKIAASKTSMFLVLQGCLRQFQLLDVMRTEMDEKRVPPAQVMQTLGRHLHFR 288 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA-QTACKN 345 ++ I++++LR W + ++++ I R++ LE I QT+L Q+A K+ Sbjct: 289 RKPIIEQALRSWTAPAIAREMNRLQSAILQTRQRASLEDTIATQTLLATTLQSARKS 345 >gi|190893974|ref|YP_001980516.1| DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652] gi|190699253|gb|ACE93338.1| putative DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652] Length = 346 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 104/339 (30%), Positives = 186/339 (54%), Gaps = 7/339 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLTEKPLEATYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE +V+ + Y D+ L LI+ L + I+ A+Q LLA + Sbjct: 117 AGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALLALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +++Q +++ ++ IL+++ Sbjct: 237 QKISSSKAAIFLVLQACLKQFQLLDTMRAEMEEKRVQAPQVMQTMGRHLHFRRKPILEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LR W+ + + +++ I +R+++ LE +I QT+L Sbjct: 297 LRQWSADSIARESNRLQAAILQSRRRQVLEDSIAMQTLL 335 >gi|241206935|ref|YP_002978031.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860825|gb|ACS58492.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 346 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 105/339 (30%), Positives = 187/339 (55%), Gaps = 7/339 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKST+N + +F+ YG D+GL+ E +Q + DPFSL Sbjct: 1 MAEIKSHEFESFLQKSTRN----YRIFVIYGPDRGLVSERASQLAGKSGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E+ S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAESARSVMTIPSYADDSRALNGLIDTELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +E+ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVEDAVDAILGGDLNAFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + + + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQTPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LR W + +++ I +R+++ LE ++ QT+L Sbjct: 297 LRQWTAESIARECNRLQAAILQSRRRQVLEDSVAMQTLL 335 >gi|86359696|ref|YP_471588.1| DNA polymerase III subunit delta [Rhizobium etli CFN 42] gi|86283798|gb|ABC92861.1| putative DNA polymerase III, delta subunit protein [Rhizobium etli CFN 42] Length = 346 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/340 (31%), Positives = 189/340 (55%), Gaps = 9/340 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSAGN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNGLIDAELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCSGLNTVEEHHVSEIIGDASAISVDDAVDAVLSGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDMMRAEMEEKRVQAPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWN-KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LR W+ +N+ RE+ +++ I +R+++ LE ++ QT+L Sbjct: 297 LRHWSAENIARES-NRLQAAILQSRRRQVLEDSVAMQTLL 335 >gi|227823851|ref|YP_002827824.1| DNA polymerase III subunit delta [Sinorhizobium fredii NGR234] gi|227342853|gb|ACP27071.1| DNA polymerase III, delta subunit protein [Sinorhizobium fredii NGR234] Length = 343 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 183/342 (53%), Gaps = 8/342 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M+ ++SH+F + + N + +F+ YG D+GL+ E Q + DPF+LV Sbjct: 1 MSEVKSHEFDGFLNRGASN----YRLFLLYGPDRGLVSERAAQLAAGCGVALDDPFALVK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+A E+Q+ +E+N+ LF +K++ I ++EK + + L+ + +II+ Sbjct: 57 LDASELQQ-AGRVLDEVNAIGLFGGEKLVWIRGAASEKAIAEALQILADTPPTGSTLIIE 115 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LRKI E +V +I+CY D+ L LI++ L I A++ LL L Sbjct: 116 AGDLKKGAALRKIGETSRAVASIACYSDDARSLQALIDKELAEAGLRIGPAARERLLEAL 175 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+ASRNEL+KL+ YC +I E+ V I+ D + +++ ++A ++G + + Sbjct: 176 GGDRMASRNELRKLALYCRGKDMIDEEDVLAIVGDASAISVDDAVDAVLKGDVDALLHAM 235 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK P +L L++FQ L+ + + S +++ + + ++ I++ + Sbjct: 236 KKITSSKTPPFLVLQACLRQFQQLDVMRAEMDTSRQPANQVVASLGRGLHFRRKPIVEAA 295 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 L+ W +R L ++ I+ +R ++ LE +++ Q +L IA Sbjct: 296 LKHWTAPAIRRELSRLQATIYQSRARQSLEDSLVLQNLLAIA 337 >gi|209551497|ref|YP_002283414.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537253|gb|ACI57188.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 346 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 184/339 (54%), Gaps = 7/339 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERAAQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDPLALLAEKPLEAAHLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE S++ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSIMTIPSYADDSRALNTLIDAELSAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LR W + +++ I +R+++ LE ++ QT+L Sbjct: 297 LRQWTAEAIARESNRLQAAILQSRRRQVLEDSVAMQTLL 335 >gi|150398392|ref|YP_001328859.1| DNA polymerase III subunit delta [Sinorhizobium medicae WSM419] gi|150029907|gb|ABR62024.1| DNA polymerase III, delta subunit [Sinorhizobium medicae WSM419] Length = 343 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 182/341 (53%), Gaps = 8/341 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M+ I+SH+F +Q+S + +F+ YG D+GL+ E + I DPF++V Sbjct: 1 MSEIKSHEFDNFLQRSAAG----YRLFLLYGPDRGLVSERATALAETFGIPLDDPFAVVK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 ++A +Q + +E+N+ LF +K++ + STEK ++D L+ + +I++ Sbjct: 57 MDATGLQ-GAGSLLDEVNAIGLFGGEKLVWMRGASTEKALIDALQFLASDPPVGARLIVE 115 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LRK+ E SV +I+CY D+ L LI++ L IS ++ L+ L Sbjct: 116 AGDLKKGAALRKVGESSRSVASIACYSDDARGLQALIDKELSDAGLRISPAGRERLMDAL 175 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+ASRNEL+KL+ YCL ++ E V I+ D + +++ ++A ++G + Sbjct: 176 GGDRMASRNELRKLALYCLGKDMVDEVDVLGIVGDASAISVDDAVDAVLKGDPDALLHAM 235 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 SK P +L L++FQ L+ + + + +++ + + ++ +++ + Sbjct: 236 KKITTSKTPPFLVLQACLRQFQQLDVMRAEMDANRQPPAQVVATLGRGLHFRRKPVVEAA 295 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 L+ W +R L ++ I+ +R ++ LE++++ Q +L I Sbjct: 296 LKHWTAPAIRRELSRLQSTIYQSRSRQSLEESLVIQNLLAI 336 >gi|15889999|ref|NP_355680.1| DNA polymerase III subunit delta [Agrobacterium tumefaciens str. C58] gi|15157968|gb|AAK88465.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 345 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 183/331 (55%), Gaps = 3/331 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I+SH+F ++ +N VF+ YG D+GL+ E K I D F+ + L A Sbjct: 1 MAEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERAGLIAKKTGIDPDDAFASLKLTA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++Q + +E+N+ LF +K++ +++ S EK ++D L+ + +II++ + Sbjct: 60 SDLQGDPGRLLDEVNAIGLFGGEKLVWVKSASAEKALVDALQILADTPPEASFLIIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRKIAE S+ AI CY D+ L LI++ L I+ A+Q L+ LGGD Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSANNLRIAPAARQRLIEQLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA-DF 239 RIASRNE++KL+ YCL +I E + II D + ++ ++A ++G NA A Sbjct: 180 RIASRNEIRKLALYCLGADVIEEDDILAIIGDASTVSADDAVDAILKGD-RNAFFHATQK 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 ++SK P +L G L++FQLL+++ + +++Q ++I ++ I++ +LR Sbjct: 239 IISSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPIIERALR 298 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 W + ++++ I +R+++ LE+++ Sbjct: 299 TWQPAAIAREMNRLQAAILQSRQRQSLEESV 329 >gi|116254458|ref|YP_770296.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. viciae 3841] gi|115259106|emb|CAK10217.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 346 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 102/339 (30%), Positives = 185/339 (54%), Gaps = 7/339 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E + + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERASLLAARSGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E+ S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAASLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNALIDTELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNAFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + + + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQPPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LR W + +++ I +R+++ LE ++ QT+L Sbjct: 297 LRQWTAESIARESNRLQAAILQSRRRQVLEDSVAMQTLL 335 >gi|325294120|ref|YP_004279984.1| DNA polymerase III, delta subunit [Agrobacterium sp. H13-3] gi|325061973|gb|ADY65664.1| putative DNA polymerase III, delta subunit [Agrobacterium sp. H13-3] Length = 345 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 182/331 (54%), Gaps = 3/331 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I+SH+F ++ +N VF+ YG D+GL+ E N K I D F+ + L+A Sbjct: 1 MTEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERANLIAKKTGIDPDDAFASLKLSA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++Q + +E+N+ LF +K++ I++ S EK ++D L+ + +II++ + Sbjct: 60 SDLQGDPGRLLDEVNAIGLFGGEKLVWIKSASAEKALVDALQILAETPPEASFLIIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRKIAE S+ AI CY D+ L LI++ L I+ A+Q L+ LGGD Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSADNLRIAPAARQRLIEQLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA-DF 239 RIASRNE++KL+ YC +I E V II D + ++ ++A ++G NA A Sbjct: 180 RIASRNEIRKLALYCRGAEVIEEDDVLAIIGDASTVSADDAVDAILKGD-RNAFFHATQK 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 ++SK P +L G L++FQLL+++ + +++Q ++I ++ +++ +LR Sbjct: 239 IVSSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPVIERALR 298 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 W + ++++ I +R+++ LE ++ Sbjct: 299 TWQPAAIAREMNRLQAAILQSRQRQSLEDSV 329 >gi|15967086|ref|NP_387439.1| DNA polymerase III subunit delta [Sinorhizobium meliloti 1021] gi|307302548|ref|ZP_07582305.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C] gi|307316121|ref|ZP_07595565.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83] gi|15076359|emb|CAC47912.1| Putative DNA polymerase III, delta subunit [Sinorhizobium meliloti 1021] gi|306897961|gb|EFN28703.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83] gi|306903218|gb|EFN33808.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C] Length = 343 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 180/341 (52%), Gaps = 8/341 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M+ ++SH+F +Q+S + +F+ YG D+GL+ E ++ + I DPF++V Sbjct: 1 MSEVKSHEFDSFLQRSAAI----YRLFLLYGPDRGLVSERASELAGSFGIPLDDPFAVVK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+A +Q + +E+N+ LF K++ + S EK + + L+ + +I++ Sbjct: 57 LDAATLQ-GAGSVLDEVNAIGLFGGDKLVWVRGASAEKALTEALQILAADPPAGARLIVE 115 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LRK+ E SV +I+CY D+ L L++ L I A++ L+ L Sbjct: 116 AGDLKKGAALRKVGETSRSVASIACYSDDIRGLQALVDTELSEAGLRIGPAARERLVEAL 175 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+ASRNEL+KL+ YC ++ E V I+ D + +++ ++A ++G + Sbjct: 176 GGDRMASRNELRKLALYCRGKDMVDEDDVLGIVGDASAISVDDAVDAVLKGDADALLHAM 235 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 SK P +L L++FQ L+ + + S S +++ + + ++ +++ + Sbjct: 236 KKITTSKTPPFLVLQACLRQFQQLDVMRAEMDASRQSAGQVVASLGRGLHFRRKPVVEAA 295 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 L+ W +R L ++ I+ +R ++ LE++++ Q +L I Sbjct: 296 LKHWTGPAIRRELGRLQATIYQSRSRQSLEESLVIQNLLAI 336 >gi|222150241|ref|YP_002551198.1| DNA polymerase III subunit delta [Agrobacterium vitis S4] gi|221737223|gb|ACM38186.1| DNA polymerase III, delta subunit [Agrobacterium vitis S4] Length = 347 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 181/342 (52%), Gaps = 9/342 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHF-VFIFYGSDKGLIFELINQFKKNISITYHDPFSLV 56 M ++SH+F +QKS + H+ +F+ YG D GL+ E K+ + DPFS++ Sbjct: 1 MVEVKSHEFDGFLQKSVR-----HYKMFLVYGPDVGLVAERAAALAKSTGVALDDPFSVI 55 Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116 L++ ++Q + +E+N+ LF +++ I ++ EK V+D L+ + + +I+ Sbjct: 56 RLDSGDLQSDPGKLLDEMNALGLFGGDRLVWIRGIANEKSVVDGLQILAKDPPDSSCLIL 115 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 ++ ++KK + RKIAE ++ I CY D+ + LI+ K ++ A+ +L + Sbjct: 116 EAGDLKKGSATRKIAEPARNIAVIPCYQDDARAINALIDAEFSAAVKRLTPAARSLLSES 175 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 LGGDR ASRNE+ KL YCL D L+ E HV+ II D + +E ++A + G + Sbjct: 176 LGGDRRASRNEISKLLLYCLHDDLVDETHVEQIIGDASAVSTDEAVDAVLAGNSDALLHA 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 SK P +L G L++FQLL+ + + +++Q + + ++ + ++ Sbjct: 236 VQKIATSKTPMFLVLQGCLRQFQLLDIMRSEMDEKRQQAGQVMQTLGRQVHFKRKPLFEK 295 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 SL+ W + + + ++ I +R++ LE ++ QT+L I Sbjct: 296 SLKNWPSDALSVEMRRLQAAILASRRQPSLEDSLSLQTLLAI 337 >gi|90421006|ref|ZP_01228910.1| putative DNA polymerase III, delta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334784|gb|EAS48560.1| putative DNA polymerase III, delta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 346 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/332 (27%), Positives = 168/332 (50%), Gaps = 7/332 (2%) Query: 18 FLSHFVFIF-----YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FLS F F YG D GL+ E + + + DPF+ V L A E++K+I ++ Sbjct: 12 FLSRPDFSFPVILLYGPDPGLVSERSEKVAELSGVDRSDPFAAVTLAADELEKDIGRLYD 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E + S+F ++I + K + + + E+ K + I+I+++ ++KK++ LR AE Sbjct: 72 EAQTVSMFGGTRLIRVRGAGNGKSLAEAVAELSAKKLDGAIVILEAGDLKKSSALRANAE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + +A+ CY D + +I+E + +I +EA+ L A LG +RIASR E++KL Sbjct: 132 RGKFAIALPCYQDEGRAIDKMIDEEMRESGLTIGREARDELRARLGANRIASRGEIRKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y L +TE+ V+ I+ D +EE I+A G++ L D +++ + L Sbjct: 192 LYALGTSSVTEEDVRAIVGDVSADTLEETIDAAASGEVRRLPHLIDRLVSAGTATFQLHQ 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L+ FQ L+ + + E +++++ + +++ ++ +L W + + L + Sbjct: 252 QLLRYFQQLQTMREMVEKGGEPVGRVVERRRPHF--RRKHAMEVALSAWPLDAITTILQR 309 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 ID I +RK+ L I QT+L +A A + Sbjct: 310 IDADILASRKEGGLALTITRQTLLDVAVEAAR 341 >gi|163757460|ref|ZP_02164549.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43] gi|162284962|gb|EDQ35244.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43] Length = 342 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 163/336 (48%), Gaps = 1/336 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I++H+F + + + YG D+GL+ E Q + D FS++ L A Sbjct: 1 MAQIKNHEFA-GFVRRQGTPFRIVLVYGPDRGLVSERAAQVAAKTGVDLSDDFSVLKLEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + +E + SLF +++ I+N E+ ++D + + + ++I++ + Sbjct: 60 SDLSGDPGRLADEFGAISLFGGDRLVWIKNAGNERGLVDAVAAVSQSDPGTSHLLIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK E + LAI CY D+ + LI+E L +I EA+Q L LGGD Sbjct: 120 LKKGAGLRKTIEAAKTALAIPCYADDARGVQALIDEELGGAGLTIQGEARQRLSQLLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL+ YC +T+ V + I D L +++ I A G + Sbjct: 180 RLASRGELKKLALYCHGSGTVTDADVVEAIGDVAALSVDDAIEAVFSGDPGRLEAALERI 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 LASK +L G + + + L+ + + E + +++ + I ++ I++ +LR Sbjct: 240 LASKTSVFLVLRGCMVQLEQLDGMRSLVEGHSRQPAQVMADKGRGIHFKRKPIVERALRH 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 W + ++++ + RK+ LE +I Q +L Sbjct: 300 WTLKAINAEMYRLAQAVLETRKRPQLEASIARQALL 335 >gi|319407833|emb|CBI81486.1| putative DNA polymerase III [Bartonella sp. 1-1C] Length = 347 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 181/353 (51%), Gaps = 11/353 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55 MA ++H+ Q FL HF + + YG D+GL+ E +F K + +PFS Sbjct: 1 MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFST 54 Query: 56 VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115 V L+A EI K+ + +E + SLF ++I I N + +K L L+ +I + I+ Sbjct: 55 VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITELPEASFIL 114 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I++ ++KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L Sbjct: 115 IEAGDLKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNVTLSLEARQYLHQ 174 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 N+G DR+ASR+EL+KL Y L+ I + VK I+ D L +E+++A + G + + + Sbjct: 175 NIGEDRLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVVDAVLLGDLASFEI 234 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + A S +L+ + FQ L+ + E + +I + + I ++ I++ Sbjct: 235 YFSRYCAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFTVISQAQPPIFFQRKKIIE 294 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 ++LR WN + + KI I +RK L + II Q +L + A NNF Sbjct: 295 QALRYWNLEKILCAMKKIQSAILESRKNPPLSEVIIHQVLLKLTIIAKCQNNF 347 >gi|319404873|emb|CBI78474.1| putative DNA polymerase III [Bartonella rochalimae ATCC BAA-1498] Length = 347 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 180/353 (50%), Gaps = 11/353 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55 MA ++H+ Q FL HF + + YG D+GL+ E +F K + +PFS Sbjct: 1 MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFST 54 Query: 56 VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115 V L+A EI K+ + +E + SLF ++I I N + +K L L+ +I + I+ Sbjct: 55 VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITEPPEASFIL 114 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I++ ++KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L Sbjct: 115 IEAGDLKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNATLSLEARQYLHQ 174 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 N+G DR+ASR+EL+KL Y L+ I + VK I+ D L +E+I+A + G + + + Sbjct: 175 NIGEDRLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVIDAVLLGDLASFEI 234 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 A S +L+ + FQ L+ + E + +I + + I ++ I++ Sbjct: 235 YFSRCCAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFIVISQAQPPIFFQRKKIVE 294 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 ++L+ WN + + KI I +RK L + II Q +L + A NNF Sbjct: 295 QALKYWNLEKILYAMKKIQSAILESRKNPLLSEVIIHQALLKLTIIAKHQNNF 347 >gi|218463266|ref|ZP_03503357.1| DNA polymerase III subunit delta [Rhizobium etli Kim 5] Length = 300 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 155/287 (54%) Query: 50 HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI 109 +DPFSL L+ ++QK+ +E S LF +K+I I + EK + D L + K + Sbjct: 3 NDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLADSLAHLAEKPL 62 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 +I+++ ++KK + LRK AE +V+ + Y D+ L LI+ L + I+ A Sbjct: 63 EATYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAA 122 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +Q L+A +GGDRIASRNE++KL+ YC + E HV +II D +++ ++A + G Sbjct: 123 RQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASATSVDDAVDAILGGD 182 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + + +SK +L L++FQLL+ + E + +++ +++ Sbjct: 183 LNGFLHAMQKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQVMHTMGRHLHFR 242 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 ++ IL+++LR W+ + +++ I +R+++ LE ++ QT+L Sbjct: 243 RKPILEQALRQWSAESIARESNRLQAAILQSRRRQVLEDSVAMQTLL 289 >gi|304392704|ref|ZP_07374644.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130] gi|303295334|gb|EFL89694.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130] Length = 350 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 1/322 (0%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++ YG D GL FE ++ K+ D F+ V L+A + + S +E ++ S+F Sbjct: 23 HALYLIYGPDHGLAFERASRIAKSSGADMEDAFATVRLDADDAASDPSRLADEAHTVSMF 82 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++I + +T K +L +E ++ + ++II++ ++KK LR EK LA+ Sbjct: 83 GGKRLIWVRG-TTRKNLLKAVEPLLALPPEDAVVIIETGDLKKTAALRSRIEKSPHALAV 141 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 CY D + L+ + + K+I +E + L+ LGGDR+ASR E+ KL Y ED Sbjct: 142 PCYADGGAAVSQLVADMVQQAGKTIDRETARALVDLLGGDRLASRGEIDKLLLYTGEDRE 201 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT HV I+ D L I+ +++A G + LA +++ L+ FQ+ Sbjct: 202 ITMDHVSTIVGDAASLAIDSVVDAAATGDMAKMEKTTKRLLAQGTAPFLIINACLRHFQM 261 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L S II I +++ + +LR+W+ + +T ++D + Sbjct: 262 LHMARARMASSRQDAGSIIGGLRPPINFQRKDAVVRALRLWSGPDLEKTSRRLDAVLLEC 321 Query: 321 RKKKYLEKNIIFQTILYIAQTA 342 R LE+ ++ +L I + A Sbjct: 322 RSNAALEQPLLMTMLLAITRQA 343 >gi|256112381|ref|ZP_05453302.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|265993816|ref|ZP_06106373.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|262764797|gb|EEZ10718.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] Length = 347 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 176/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ +ST S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARSTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L EE+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTEEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|240851360|ref|YP_002972763.1| putative DNA polymerase III subunit delta [Bartonella grahamii as4aup] gi|240268483|gb|ACS52071.1| putative DNA polymerase III subunit delta [Bartonella grahamii as4aup] Length = 346 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 173/351 (49%), Gaps = 28/351 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55 MA ++H+ Q FL+ F + + YG D+GLI E F K + DPFS Sbjct: 1 MAQKKAHEVDQ------FLTRFSRAFPIVLIYGPDRGLICERAQCFAKLTQVAIEDPFST 54 Query: 56 VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115 + L+A EI K+ + NE + SLF ++I I N + +K L L+ +I K + I+ Sbjct: 55 IRLDAAEIDKDPARLENEARTLSLFGGDRLIWISNAANQKGFLAALKILIEKPPESCFIL 114 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I+S ++KK LR + E + +A+ C+ D+ L LI+E L +K++S +A++ L Sbjct: 115 IESGDLKKGTGLRNVVETSSKAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHE 174 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 +LG DR+ SR EL+KL Y ++ IT + VK I+ D L +E+I+A + G I Sbjct: 175 SLGADRLISRGELEKLCLYA-ANVHITLEDVKAIVSDVSALSQDEVIDALLLGDISG--- 230 Query: 236 LADFFLASKMPSHALLHGFL--------QKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 + HA LHG L + FQ L+ + E S ++ + I Sbjct: 231 -----FEAHFNRHAALHGALFFILSAAQRHFQQLQLLRYQVEVEGKSPFTVVSQARPPIF 285 Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 ++ ++++L+ W + + +I + +RK L + II Q +L + Sbjct: 286 FQRKKTVEQALKYWKLEQISYAMERIQGAVLDSRKNPLLGEAIIRQVLLGL 336 >gi|17986295|ref|NP_538929.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|225853488|ref|YP_002733721.1| DNA polymerase III subunit delta [Brucella melitensis ATCC 23457] gi|256045659|ref|ZP_05448537.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|256263032|ref|ZP_05465564.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|260562961|ref|ZP_05833447.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|265992081|ref|ZP_06104638.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|17981878|gb|AAL51193.1| DNA polymerase iii, delta subunit [Brucella melitensis bv. 1 str. 16M] gi|225641853|gb|ACO01767.1| DNA polymerase III, delta subunit [Brucella melitensis ATCC 23457] gi|260152977|gb|EEW88069.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|263003147|gb|EEZ15440.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|263092905|gb|EEZ17080.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|326410052|gb|ADZ67117.1| DNA polymerase III subunit delta [Brucella melitensis M28] gi|326539769|gb|ADZ87984.1| DNA polymerase III, delta subunit [Brucella melitensis M5-90] Length = 347 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/348 (24%), Positives = 176/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ +ST S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARSTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|254718099|ref|ZP_05179910.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|265983052|ref|ZP_06095787.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306839724|ref|ZP_07472526.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653] gi|264661644|gb|EEZ31905.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306405184|gb|EFM61461.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653] Length = 347 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGDSLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|148559309|ref|YP_001259862.1| DNA polymerase III subunit delta [Brucella ovis ATCC 25840] gi|148370566|gb|ABQ60545.1| DNA polymerase III, delta subunit [Brucella ovis ATCC 25840] Length = 388 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 42 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 97 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+++ ++ + + I+I+ Sbjct: 98 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLVEAVKRLAAEPPQETFILIE 157 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 158 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 217 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 218 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 277 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 278 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 337 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 338 ISRWTGESLTRIMERLQRAVLESRRNAALSVPIIRQGLLAISVESLRN 385 >gi|256370455|ref|YP_003107966.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|256000618|gb|ACU49017.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] Length = 347 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/348 (24%), Positives = 175/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ I +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|225626436|ref|ZP_03784475.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo] gi|237816407|ref|ZP_04595400.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A] gi|225618093|gb|EEH15136.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo] gi|237788474|gb|EEP62689.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A] Length = 388 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 42 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 97 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 98 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 157 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 158 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 217 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 218 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 277 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 278 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 337 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 338 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 385 >gi|256060021|ref|ZP_05450203.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261323998|ref|ZP_05963195.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261299978|gb|EEY03475.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] Length = 347 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/348 (24%), Positives = 175/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ I +R+ L II Q +L I+ + +N Sbjct: 297 INRWTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|319409430|emb|CBI83079.1| putative DNA polymerase III [Bartonella schoenbuchensis R1] Length = 346 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 24/342 (7%) Query: 18 FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FL+HF + + YG D+GL+ E +F K + DPFS + LNA EI K+ + Sbjct: 12 FLTHFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIDDPFSTIRLNAAEIDKDPVRLQD 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E ++ SLF ++I I N + +K L L+ +I + ++I++ ++KK LR I E Sbjct: 72 EAHTLSLFGGDRLIWISNGANQKGFLAALKLLIKEPPKACFVLIEAGDLKKGVGLRNIVE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++ LA+ CY D+ L +I+E L + ++S EA++ L +LG DR+ SR EL+KL Sbjct: 132 TASTALALPCYTDDIRSLDRVIDEVLNNFKMTLSLEARKWLYESLGADRLISRGELEKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI---------YNAIMLADFFLAS 243 Y L+ +T + VK ++ + L +E+I+A + G + Y + FF+ S Sbjct: 192 LYALKKDQVTLEDVKAVVSEASALSQDEVIDAILLGDVAGFEMHFSRYATMQNTLFFVLS 251 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 H FQ L+ + E + +I + I + +N+ +++L+ W Sbjct: 252 AAQRH---------FQQLQLLRYQVEVEGKAAFAVISQARPPIFFVGKNV-EKALKYWGL 301 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + KI + +RK +L + I+ Q +L +A +A K Sbjct: 302 EQIAYAMEKIQCAVLDSRKNPFLGEAIVHQVLLGLAVSAQKR 343 >gi|23502905|ref|NP_699032.1| DNA polymerase III subunit delta [Brucella suis 1330] gi|62290901|ref|YP_222694.1| DNA polymerase III subunit delta [Brucella abortus bv. 1 str. 9-941] gi|82700812|ref|YP_415386.1| DNA polymerase III subunit delta [Brucella melitensis biovar Abortus 2308] gi|161619971|ref|YP_001593858.1| DNA polymerase III subunit delta [Brucella canis ATCC 23365] gi|163844075|ref|YP_001628479.1| DNA polymerase III subunit delta [Brucella suis ATCC 23445] gi|189025114|ref|YP_001935882.1| DNA polymerase III subunit delta [Brucella abortus S19] gi|254690189|ref|ZP_05153443.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|254694679|ref|ZP_05156507.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|254696305|ref|ZP_05158133.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|254702353|ref|ZP_05164181.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|254705058|ref|ZP_05166886.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|254707425|ref|ZP_05169253.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|254709034|ref|ZP_05170845.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|254731222|ref|ZP_05189800.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|256030559|ref|ZP_05444173.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|256158555|ref|ZP_05456445.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|256253964|ref|ZP_05459500.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|256258443|ref|ZP_05463979.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260169464|ref|ZP_05756275.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|260546162|ref|ZP_05821902.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260567473|ref|ZP_05837943.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260755730|ref|ZP_05868078.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260758954|ref|ZP_05871302.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260760676|ref|ZP_05873019.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|260884756|ref|ZP_05896370.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|261215007|ref|ZP_05929288.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|261221106|ref|ZP_05935387.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261314910|ref|ZP_05954107.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261316533|ref|ZP_05955730.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261752916|ref|ZP_05996625.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261755761|ref|ZP_05999470.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|261758991|ref|ZP_06002700.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|265987607|ref|ZP_06100164.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|265997067|ref|ZP_06109624.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|297247285|ref|ZP_06931003.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str. B3196] gi|306842828|ref|ZP_07475468.1| DNA polymerase III, delta subunit [Brucella sp. BO2] gi|23348936|gb|AAN30947.1| conserved hypothetical protein [Brucella suis 1330] gi|62197033|gb|AAX75333.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616913|emb|CAJ12014.1| putative DNA polymerase III, delta subunit [Brucella melitensis biovar Abortus 2308] gi|161336782|gb|ABX63087.1| DNA polymerase III, delta subunit [Brucella canis ATCC 23365] gi|163674798|gb|ABY38909.1| DNA polymerase III, delta subunit [Brucella suis ATCC 23445] gi|189020686|gb|ACD73408.1| putative DNA polymerase III, delta subunit [Brucella abortus S19] gi|260096269|gb|EEW80145.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260156991|gb|EEW92071.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260669272|gb|EEX56212.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260671108|gb|EEX57929.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|260675838|gb|EEX62659.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260874284|gb|EEX81353.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260916614|gb|EEX83475.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|260919690|gb|EEX86343.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261295756|gb|EEX99252.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261303936|gb|EEY07433.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261738975|gb|EEY26971.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|261742669|gb|EEY30595.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261745514|gb|EEY33440.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|262551535|gb|EEZ07525.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|264659804|gb|EEZ30065.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|297174454|gb|EFH33801.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str. B3196] gi|306287022|gb|EFM58533.1| DNA polymerase III, delta subunit [Brucella sp. BO2] Length = 347 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|110635645|ref|YP_675853.1| DNA polymerase III subunit delta [Mesorhizobium sp. BNC1] gi|110286629|gb|ABG64688.1| DNA polymerase III, delta subunit [Chelativorans sp. BNC1] Length = 345 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/317 (22%), Positives = 165/317 (52%), Gaps = 1/317 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D+GL+ E F + + DPFS+V ++A E + +E + +F+ Sbjct: 22 VVLLYGPDRGLVSERARLFAQKSGLPLDDPFSVVKIDAAEADQP-GRLLDEARTVPMFAD 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + ++ + + ++ + + +++I++ ++KK+ +LR E+ +A+ C Sbjct: 81 RRLVWVRGVGSQSAIAADIAALVEEPPSDCLVLIEAGDLKKSASLRTTVERGDRAIALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D+ + +I++ L + +I+ +A+ +L ANLGGDR+A+R EL+KL+ YC +T Sbjct: 141 YSDDSRSIDAVIDDVLSKAKLTITLDARHLLKANLGGDRLATRGELEKLALYCAGASEVT 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 ++ +I D + ++E ++A + G+I + L +A P+ +L L+ Q L+ Sbjct: 201 ADDIRALIGDVSGISVDEAVDAIMTGRIADFDHLFTRHVAGGSPAFLMLSAALRHVQGLQ 260 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E S + + +R+ ++++++ WN+ ++ ++ I +R+ Sbjct: 261 LMREQVEAQGKSPAAAVASARPPVFFARRSAVEQAVQRWNQAMLHAAAERLQGAILKSRQ 320 Query: 323 KKYLEKNIIFQTILYIA 339 + + + Q +L +A Sbjct: 321 HPAVAEPVSRQALLALA 337 >gi|306843473|ref|ZP_07476074.1| DNA polymerase III, delta subunit [Brucella sp. BO1] gi|306276164|gb|EFM57864.1| DNA polymerase III, delta subunit [Brucella sp. BO1] Length = 347 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ ++ DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLSLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAIENASAGMALPCYSDDARGIDGVIDDILAEWKMQIALDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|254713540|ref|ZP_05175351.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|254716105|ref|ZP_05177916.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261217876|ref|ZP_05932157.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261321274|ref|ZP_05960471.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|260922965|gb|EEX89533.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261293964|gb|EEX97460.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] Length = 347 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+R EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEMVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|153008199|ref|YP_001369414.1| DNA polymerase III subunit delta [Ochrobactrum anthropi ATCC 49188] gi|151560087|gb|ABS13585.1| DNA polymerase III, delta subunit [Ochrobactrum anthropi ATCC 49188] Length = 347 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 172/341 (50%), Gaps = 4/341 (1%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F+ + T S V + YG DKGL+ E +F + + DPF+++ + A EI+ Sbjct: 8 EVDSFLARPTN----SFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEADEIE 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + S+F +++I I+N + +KK+ + ++ + + +++++ ++KK Sbjct: 64 ADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPLETFVLVEAGDLKKG 123 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LR E ++ +A+ CY D+ + +I++ L + I+ + +Q+L A+LGGDR+A+ Sbjct: 124 AGLRSAVENASAGMALPCYSDDSRGIDGVIDDVLAEWKMQITLDGRQLLRASLGGDRLAT 183 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R EL+KL Y I V++ + D L +E+I+A + G + + D + S Sbjct: 184 RGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEVSFDRVVKSG 243 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL+ +++FQ ++ + I + S ++ I ++ +++ S+ W Sbjct: 244 TAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAAARPPIFFNRKKLVENSVSRWTGE 303 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + ++ I +R+ L II Q +L I+ + +N Sbjct: 304 SLARVMERLQRAILESRQNAALAIPIIRQCLLAISVESLRN 344 >gi|49474792|ref|YP_032834.1| DNA polymerase III subunit delta [Bartonella quintana str. Toulouse] gi|49240296|emb|CAF26774.1| hypothetical protein BQ13150 [Bartonella quintana str. Toulouse] Length = 354 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 164/335 (48%), Gaps = 21/335 (6%) Query: 18 FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FL+HF + + YG D+GL+ E + +F K I DPFS V L+A EI K+ + + Sbjct: 12 FLTHFARSFPIVLIYGPDRGLVCERVQRFVKLTQIAVEDPFSTVRLDAAEIDKDPARLVD 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E + SLF ++I + N + +K L L+ +I + I+I++ ++KK LR I E Sbjct: 72 EARTLSLFGGDRLIWVSNGAHQKNFLAVLKILIKEPPEKSFILIEAGDLKKGTGLRNIIE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + +A+ C+ D+ L L+ E L + +IS +A++ LL +LGGD + SR EL+KL Sbjct: 132 SASIAMALPCFADDIRALDTLVNEVLDHFKMTISLDARKWLLHHLGGDHLVSRGELEKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y LE I + VK ++ D L +E+I+A + G I + HA L Sbjct: 192 LYALEKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDIAG--------FEAHFSRHATLQ 243 Query: 253 GFL--------QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L + FQ L+ + + S +I + + I ++ ++ +L W Sbjct: 244 NALFFILNTAQRHFQQLQLLRYQIDVEGKSAFTVISQAQPPIFFQRKKTIEHALNYWGME 303 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + ++ + +RK L + II Q +L +A Sbjct: 304 QISYAMERLQGAVLESRKNPLLGEAIIRQALLALA 338 >gi|319780619|ref|YP_004140095.1| DNA polymerase III, subunit delta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166507|gb|ADV10045.1| DNA polymerase III, delta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 347 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 156/323 (48%), Gaps = 12/323 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D+GL+ E F + DPFS+V L E+ ++ +E + +FS Sbjct: 22 IVLLYGPDRGLVSERAKAFAGKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + N S +K + D ++ + + + II+I++ ++KK LR I E + +A+ C Sbjct: 82 RRLLWVRNASGQKALADDVKALTAEPARDAIILIEAGDLKKGVGLRAIVEAADNAMALPC 141 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D + +I+ L S++ EA+Q L NLGGDR+ASR E++KL Y I Sbjct: 142 YADEARDIDTVIDGELGRAGMSMTMEARQALRRNLGGDRLASRGEIEKLVLYAHGQTEIG 201 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL---QKFQ 259 + VK + D ++ ++A ++GKI DF A + FL + Sbjct: 202 LEEVKAMSGDVSGASFDDAVDALLEGKI------GDFDTAFTRHCQSGGQPFLVLSSAMR 255 Query: 260 LLEKIHIIK---ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 L++I I++ E N + ++ + +R +++++L W+ + L ++ Sbjct: 256 QLQQIQIMRGQMESGNRNAASVVAAARPPVFFSRRKLVEKALERWSTEALGRALTRLQTA 315 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 + R++ L + Q +L IA Sbjct: 316 VLQTRRRPDLSVALARQALLGIA 338 >gi|260467204|ref|ZP_05813381.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum WSM2075] gi|259029057|gb|EEW30356.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum WSM2075] Length = 348 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 156/323 (48%), Gaps = 12/323 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D+GL+ E F + DPFS+V L E+ ++ +E + +FS Sbjct: 22 IVLLYGPDRGLVSERAKAFAAKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + N S +K + D ++ + + + II+I++ ++KK LR + E +A+ C Sbjct: 82 RRLLWVRNASGQKALADDVKALAAEPARDAIILIEAGDLKKGVGLRAVVEAADIAMALPC 141 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D + +I++ L S++ EA+Q L NLGGDR+ASR E++KL Y I Sbjct: 142 YADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDRLASRGEIEKLVLYAHGQKEIG 201 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------SKMPSHALLHGFLQ 256 + V+ + D ++ ++A ++GK+ DF A S P +L ++ Sbjct: 202 LEEVRAMSGDVSGASFDDAVDALLEGKV------GDFDTAFTRHCQSGGPPFLVLSSAMR 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + Q ++ + E + ++ + +R +++++L W+ + + L ++ Sbjct: 256 QLQQIQVMRGQMEQGGRNAASVVAGARPPVFFSRRKLVEKALERWSSDALGRALTRLQTA 315 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 + R++ L + Q +L IA Sbjct: 316 VLQTRRRPDLSAALARQALLGIA 338 >gi|114705822|ref|ZP_01438725.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506] gi|114538668|gb|EAU41789.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506] Length = 345 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 2/328 (0%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S+ V + YG D GL+ E + I DPF+ V L+A E++K+I ++E + SL Sbjct: 19 SYPVILLYGPDPGLVSERAATIAGHSGIDPSDPFASVSLSADELEKDIGRLYDEALTVSL 78 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F ++I + T K + + + + K + I+I+++ ++K+N LR E+ +A Sbjct: 79 FGGTRLIRVRGAGTGKVLSEAVATLSEKKLEGAILIVEAGDLKRNAALRLSVERAKFAIA 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + CY D L +I+E I +E ++ L + LG +R+ASR E++KL Y Sbjct: 139 LPCYQDEGRALDRMIDEEFSRAGLQIDREGREELKSRLGANRMASRGEVEKLCVYAYGTE 198 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V I+ D ++E I+ATI G + L + + P L L+ Q Sbjct: 199 RVTADDVAAIVGDVSADAVDEAIDATISGAVKKLPALIERLTDAGTPIFQLQQNLLRTIQ 258 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + I E +++++ + ++ L+ +L W + + T +I+ I Sbjct: 259 QLTAMREIVERQGEPVSRVVERRRPHF--KRKAALETALASWPLDALARTARRIETDILR 316 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347 +RK+ + I Q +L IA A KN Sbjct: 317 SRKENQMALTITRQMMLSIAVEAAKNRR 344 >gi|239833098|ref|ZP_04681427.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG 3301] gi|239825365|gb|EEQ96933.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG 3301] Length = 347 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 173/341 (50%), Gaps = 4/341 (1%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F+ + T S V + YG DKGL+ E +F + + DPF+++ + A EI+ Sbjct: 8 EVDSFLARPTS----SFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEADEIE 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + S+F +++I I+N + +KK+ + ++ + + +++++ ++KK Sbjct: 64 ADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPQETFVLVEAGDLKKG 123 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LR E + +A+ CY D+ + +I++ L + I+ + +Q+L A+LGGDR+A+ Sbjct: 124 AGLRSAVENAPAGMALPCYSDDSRGIDGVIDDVLAEWKIQITLDGRQLLRASLGGDRLAT 183 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R EL+KL Y I V++ + D L +E+I+A + G + + D + S Sbjct: 184 RGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEISFDRVVKSG 243 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL+ +++FQ ++ + I + S ++ T I ++ +++ ++ W+ Sbjct: 244 TAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAATRPPISFNRKKLIENAVSRWSGE 303 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + ++ + +R+ L II Q +L I+ A +N Sbjct: 304 SLARVMERLQRAVLESRQNASLAIPIIRQCLLAISVEALRN 344 >gi|49476274|ref|YP_034315.1| DNA polymerase III subunit delta [Bartonella henselae str. Houston-1] gi|49239082|emb|CAF28385.1| hypothetical protein BH16220 [Bartonella henselae str. Houston-1] Length = 350 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 23/342 (6%) Query: 18 FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FL F + + YG D+GL+ E + F K I DPF V L+A EI K+ + + Sbjct: 12 FLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAAEIDKDPARLLD 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E + SL ++I + N + +K LD L+ +I + I+I++ ++KK LR I E Sbjct: 72 EARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDLKKGTGLRNIIE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + +A+ C+ D+ L LI+E L + +++ +A++ LL +LGGD + SR+EL+KL Sbjct: 132 TASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGDHLVSRSELEKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI---------YNAIMLADFFLAS 243 Y LE I + VK ++ D L +E+I+ + G + Y + A FF+ S Sbjct: 192 LYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYATLQGALFFILS 251 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 H Q+ Q+L + I E N+ F I Q + I ++ ++ +L W + Sbjct: 252 TAQRH------FQQLQIL-RYQIDVEGKNM-FTAISQ-AQPPIFFQRKKTIERALSYWGR 302 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + +I H + +RK L + II Q +L +A A + Sbjct: 303 EQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQ 344 >gi|319406358|emb|CBI79997.1| putative DNA polymerase III [Bartonella sp. AR 15-3] Length = 347 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/341 (29%), Positives = 173/341 (50%), Gaps = 11/341 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55 MA ++H+ Q FL HF + + YG D+GL+ E +F K + +PF+ Sbjct: 1 MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFTT 54 Query: 56 VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115 V L+A EI K+ + +E + SLF ++I + N + ++ L L+ +I + I+ Sbjct: 55 VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWVSNGANQQGFLKALKLLITEPPEASFIL 114 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I++ ++KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L Sbjct: 115 IEAGDLKKGVGLRNIIEMASTAIALPCYTDNTHSLDILIDEILGEFNITLSLEARQCLHQ 174 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 N+G DR+ASR+EL+KL Y + + + VK I+ D L +E+I+A + G + Sbjct: 175 NIGEDRLASRSELEKLCLYTFKKAHVAFEDVKAIVSDVSTLSQDEVIDAVLLGDLVGFET 234 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +A S +L+ + FQ L+ + E + ++ + + I ++ I++ Sbjct: 235 YFSCCIAVNKTSLFVLNTAQRHFQQLQLLRYQIEIEGKNSFVVVSQAQPPIFFQRKKIVE 294 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 ++LR WN + + KI I +RK L + II + +L Sbjct: 295 QALRYWNLEKILYAMKKIQSAILESRKNPLLSEAIIHKVLL 335 >gi|294851286|ref|ZP_06791959.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|294819875|gb|EFG36874.1| DNA polymerase III [Brucella sp. NVSL 07-0026] Length = 346 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/348 (23%), Positives = 174/348 (50%), Gaps = 7/348 (2%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA ++H+ F+ + T S V + YG DKGL+ E ++ + DPF+++ Sbjct: 1 MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + A EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I+ Sbjct: 57 MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+L Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR+A+ EL+KL Y I V++ + D L +E+++A + G + + Sbjct: 177 GGDRLATHGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + S LL +++FQ ++ + I + S ++ I ++ +++ + Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344 >gi|319899480|ref|YP_004159577.1| hypothetical protein BARCL_1344 [Bartonella clarridgeiae 73] gi|319403448|emb|CBI77016.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 347 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 163/324 (50%), Gaps = 5/324 (1%) Query: 18 FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FL +F + + YG D+GL+ E +F K + +PFS V L+A EI K+ + N Sbjct: 12 FLKYFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIENPFSTVRLDAAEIDKDPARLGN 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E + SLF ++I + N K L L+ +I + I+I++ ++KK LR I E Sbjct: 72 EARTLSLFGGDRLIWVSNGDNHKGFLKALKFLITEPPKKSFILIEAGDLKKGVGLRNIIE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++ +A+ CY DN L LI+E L ++S EA+Q L N+G DR+ASR+EL+KL Sbjct: 132 MASTAIALPCYADNVHSLNGLIDEILDEFSITLSLEARQCLHQNIGEDRLASRSELEKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y L+ I + VK ++ D L +E+I+A + G + ++ +L+ Sbjct: 192 LYALKKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDLAGFETYFSRYVVINSRFLFILN 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + FQ L+ + E + +++ + I ++ ++++LR WN + + K Sbjct: 252 VAQRNFQQLQLLRYQVEIEGKNSFEVVAQARPPIFFQRKKKVEQALRYWNLEQILYAMKK 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336 I I +RK L + II Q +L Sbjct: 312 IQSAILESRKNPLLNETIIHQLLL 335 >gi|254472510|ref|ZP_05085910.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062] gi|211958793|gb|EEA93993.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062] Length = 346 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/326 (29%), Positives = 155/326 (47%), Gaps = 6/326 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + DPFS V L+A +I + S +E + LF Sbjct: 22 LILVYGPDTGLVNERAQALISKAAAENDDPFSQVKLDAADIAADPSRLVDEALTIPLFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I + T K VL +E ++ N I+I++ ++KK + LRK E + +AI C Sbjct: 82 RRTIWVRENGT-KSVLPAVEPLLKNNDFTAFIVIEAGDLKKTSGLRKKIEASKTAVAIPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + D + L++E ISKEA+ L LG DRIASR EL+KL Y + D I Sbjct: 141 FADTARDVDRLVDEETQSAGLQISKEARMALHTLLGADRIASRGELKKLCLYAMNDNRIE 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 HV++II D ++E+I+A G + AS + L+ FQ+L Sbjct: 201 VHHVEEIIGDASAFAMDELIDAAALGDTVTLDHGLERLSASGTDVGVIASQALRHFQML- 259 Query: 263 KIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 H+ +K I+ E +I I +R+ + + IWN++ + L +++ + A Sbjct: 260 --HLCRLKANQRIAVEDVIGGIRPPIFWKRRSKIVRQVEIWNEDFLERALIRLNDAVKEA 317 Query: 321 RKKKYLEKNIIFQTILYIAQTACKNN 346 R L I+ T+L IAQ A +N Sbjct: 318 RFNANLSTAIVSHTLLAIAQVAKASN 343 >gi|13473770|ref|NP_105338.1| DNA polymerase III subunit delta [Mesorhizobium loti MAFF303099] gi|14024521|dbj|BAB51124.1| mlr4475 [Mesorhizobium loti MAFF303099] Length = 347 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 75/323 (23%), Positives = 159/323 (49%), Gaps = 12/323 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D+GL+ E F + + DPFS+V L E+ ++ +E + +FS Sbjct: 22 IVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + N + +K + + ++ + + + II+I++ ++KK LR + E + +A+ C Sbjct: 82 RRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDLKKGVGLRAVVEGADNAMALPC 141 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D + +I++ L S++ EA+Q L NLGGDR+ASR E++KL Y I Sbjct: 142 YADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDRLASRGEIEKLILYAHGQKEIG 201 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------SKMPSHALLHGFLQ 256 + V+ + D ++ ++A ++GK+ DF A S P +L ++ Sbjct: 202 LEDVRAMSGDVSGTSFDDAVDALLEGKV------GDFDTAFTRHCQSGGPPFLVLSSAMR 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + Q ++ + + + ++ + +R +++++L W+ + + L ++ Sbjct: 256 QLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERWSSDALSRALTRLQTA 315 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 + RK+ L + + Q +L IA Sbjct: 316 VLQTRKRPDLSEALARQALLGIA 338 >gi|163869289|ref|YP_001610545.1| DNA polymerase III subunit delta [Bartonella tribocorum CIP 105476] gi|161018992|emb|CAK02550.1| putative DNA polymerase III [Bartonella tribocorum CIP 105476] Length = 346 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 174/350 (49%), Gaps = 30/350 (8%) Query: 1 MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55 MA ++H+ Q FL+ F + + YG D+GLI E +F K + DPFS Sbjct: 1 MAQKKAHEVDQ------FLTRFSRAFPIVLIYGPDRGLICERAQRFAKLTKVAIEDPFST 54 Query: 56 VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115 + L+A +I K+ + NE + SLF ++I I + + +K L L+ +I K I+ Sbjct: 55 IRLDAADIDKDPACLENEARTFSLFGGDRLIWISHAANQKGFLAALKLLIEKPPEKSFIL 114 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I++ ++KK LR + E + +A+ C+ D+ L LI+E L +K++S +A++ L Sbjct: 115 IEAGDLKKGTGLRNVIETAANAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHE 174 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI----- 230 +LG DR+ SR EL+KL Y L ++ IT + VK I+ D L +EII+A + G I Sbjct: 175 SLGVDRLVSRGELEKLCLYAL-NVHITLEDVKAIVSDVSALSQDEIIDALLLGDISGFEA 233 Query: 231 ----YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 + A+ A FF+ S H FQ L+ + E + ++ + I Sbjct: 234 HFNRHAALQGALFFILSTAQRH---------FQQLQLLRYQVEVEGKTPVTVVSQARPPI 284 Query: 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 ++ ++++++ W + + +I + +RK L + II Q +L Sbjct: 285 FFQRKKNVEQAVKYWKLEQISYAMERIQSAVLESRKNPLLGEAIIRQALL 334 >gi|121602554|ref|YP_988388.1| DNA polymerase III subunit delta [Bartonella bacilliformis KC583] gi|120614731|gb|ABM45332.1| DNA polymerase III, delta subunit [Bartonella bacilliformis KC583] Length = 347 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 23/333 (6%) Query: 18 FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 FL+HF + + YG D+GL+ E + +F K I DPF+ V L+A EI K+ + + Sbjct: 12 FLTHFSRSFPIVLIYGPDRGLVCERVQRFIKLTQIATDDPFATVRLDAAEIDKDPARLGD 71 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 E + SLF +++ + N + +K L+ L+ +I + I+I++ ++KK LR I E Sbjct: 72 EARTLSLFGSDRLVWVSNGANQKNFLEALKLLIAEPPEKSFILIEAGDLKKGIGLRNIVE 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + +A+ CY D+ L LI+E L + ++S EA++ L +LGGD + SR EL+KL Sbjct: 132 TASVAMALPCYADDVRSLDTLIDEVLESFKMTLSLEARKGLYESLGGDHLVSRRELEKLC 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG---------KIYNAIMLADFFLAS 243 Y E IT + VK ++ D +E+I+A + G Y A+ F + S Sbjct: 192 LYASEKRHITLEDVKAVVSDVSAFSSDEVIDAILLGDGKEFEVHFSRYVAMHNTPFLVLS 251 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 H FQ L+ + E + ++ + I ++ ++++L+ W Sbjct: 252 TAQRH---------FQQLQILRYQVEIEQKTAFAVMSQARPPIFFQRKKTVEKALKYWTL 302 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + KI + +RK L + II + +L Sbjct: 303 EKISYAMEKIQCALLESRKNPLLGEAIIHRVLL 335 >gi|154245395|ref|YP_001416353.1| DNA polymerase III subunit delta [Xanthobacter autotrophicus Py2] gi|154159480|gb|ABS66696.1| DNA polymerase III, delta subunit [Xanthobacter autotrophicus Py2] Length = 342 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/325 (21%), Positives = 159/325 (48%), Gaps = 4/325 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GL+ E + HDPF+LV L +I + +E ++ LF Sbjct: 22 VVLIFGPDTGLVHERAQGLVRRAVPDAHDPFALVRLEGDDISSDPRRLIDETSTIGLFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + + ++ L+ ++ C+ ++++++ ++KK LR + E + LAI+C Sbjct: 82 ERVVWVR--AGSRNIVPALQPVLAGR-CDALVVVEAGDLKKGAPLRALCENAPNALAIAC 138 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D+ L L++ + +I ++A+ +L++ +GGDR+ASR E+ KL Y ++ Sbjct: 139 YADSDRDLSRLVDAMMAEAGLTIDRDARDLLVSLIGGDRLASRGEIAKLILYAQGQQRVS 198 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ I+ D L +++++++ + G+ A+ + + A+L L+ L Sbjct: 199 LEDVRTIVGDASALALDDVVDSALAGETREALAALAKAMGAATRPDAVLGSLLRALTALH 258 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + S ++++ + ++ ++++LR + + + L +D + AR+ Sbjct: 259 PM-TLAVAGGASPDQVVGSARPPVHFSRKAKMEKALRALDPDRCLKALLAVDDAVLAARR 317 Query: 323 KKYLEKNIIFQTILYIAQTACKNNN 347 L I + +L +AQ A + Sbjct: 318 NAPLAPAICERVVLQVAQQAGRGRR 342 >gi|298293751|ref|YP_003695690.1| DNA polymerase III subunit delta [Starkeya novella DSM 506] gi|296930262|gb|ADH91071.1| DNA polymerase III, delta subunit [Starkeya novella DSM 506] Length = 340 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 8/282 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GL+ E + + DPF LV L+ EI + +E + +LF Sbjct: 22 VLLLFGPDSGLVRERARAYLARAAEGSSDPFGLVRLDGDEIAGDPGRLVDEAGTVALFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I + S + V+ +E ++ + I++I++ ++K+ LR + E LAI+C Sbjct: 82 RRVISLRVGS--RNVVPAVEALLAAPPGDAIVVIEAGDLKRGQGLRALCEASPRALAITC 139 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D L LI+ + SI ++A+ L+ LGGDR+ASR E+ KL Y + IT Sbjct: 140 YADTDRDLTRLIDTMVTEAGLSIDRDARAELMGLLGGDRLASRGEIAKLLLYAAGEPRIT 199 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQL 260 +HV+ I+ D L ++EI ++ G+ M + F AS M + +L + Q Sbjct: 200 AEHVRAIVGDASSLALDEIADSAFAGQPTE--MASAFAKASGEGMRADIILGSVCRTGQA 257 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 L + + + +I E+ I+ I ++ +++++LR W+ Sbjct: 258 LHLLRLAADAGSI--ERAIESARPAIHFRRKPLIEKALRSWS 297 >gi|315122027|ref|YP_004062516.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495429|gb|ADR52028.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 113 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/109 (63%), Positives = 84/109 (77%) Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +A+FF SKM HALL+GFLQKFQLLEKI+I E IS EK IQK EK IP KR +LQ Sbjct: 1 MAEFFFGSKMSPHALLNGFLQKFQLLEKIYIESEFLEISIEKTIQKFEKTRIPKKRLLLQ 60 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + L+IWNKN++++ LHKI+ IHL RKK+ LEK+IIFQ IL I+QTA K Sbjct: 61 KFLQIWNKNIIKKILHKINQEIHLLRKKRSLEKSIIFQIILLISQTAHK 109 >gi|182677221|ref|YP_001831367.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633104|gb|ACB93878.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 340 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%) Query: 1 MATIESH---KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M I+SH +F+ + T ++FL ++ +G+D GL+ E + DPF + Sbjct: 1 MVAIKSHEADRFLARPTTHVFL----YLVHGTDNGLVAERVKTIVARSVDDPKDPFQFLR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++ + +E ++ LF ++ ILI + K + +E I+ + II++ Sbjct: 57 LDGDDLAADPQRLADEAHTVPLFGGRRAILIG--ARGKAFIQAVEPILAVPPQDCTIIVE 114 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + +KK+N LRK+ E+ + AI CYPD++ L LIE +++I +AK+ LL+ L Sbjct: 115 AGALKKDNALRKLCERDKNAAAIECYPDSQRDLQALIEAETAATRQTIRADAKEELLSLL 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G DR+ +R EL KL Y + IT HV+ I+ D L+++ INA G+ NA +A Sbjct: 175 GADRLTTRGELDKLLLYTHGEAEITLSHVEAIVADASSLFVDGAINAAFAGEATNADRIA 234 >gi|148251787|ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizobium sp. BTAi1] gi|146403960|gb|ABQ32466.1| DNA polymerase III, delta subunit [Bradyrhizobium sp. BTAi1] Length = 342 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 4/211 (1%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + YG D GL+ E + + DPFS+V L+ E+ S +E + L Sbjct: 19 ARPLILLYGPDTGLVRERADTLMASAVDNPDDPFSVVKLDGDELAAEPSRLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++ I + S ++ L ++ +++ C I+I++ +I+ ++ LRKI EK T+ Sbjct: 79 FGGRRAIRVRAGSRNFASGVETLSQMTVRD-CR--IVIEAGDIRPDSPLRKICEKATTAA 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI CYPD + L LI+E L + I+ +A+ L+A LGGDR ASRNEL+KL+ + + Sbjct: 136 AIGCYPDTERDLARLIDEELRVAALRIAPDARASLMALLGGDRQASRNELRKLTLFAHGE 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +T HV ++ D + ++ I++ GK Sbjct: 196 GEVTLDHVMAVVADASEMKLDPIVDGAFGGK 226 >gi|218670995|ref|ZP_03520666.1| DNA polymerase III subunit delta [Rhizobium etli GR56] Length = 220 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 107/195 (54%) Query: 36 ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEK 95 E Q + DPFSL L+ ++QK+ +E S LF +K+I I + EK Sbjct: 3 ERAGQLAGKTGVALDDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEK 62 Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155 ++D L + K + +I+++ ++KK + LRK AE +V+ + Y D+ L LI+ Sbjct: 63 YLVDSLALLAEKPLEAAYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLID 122 Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 L + I+ A+Q L+A +GGDRIASRNE++KL+ YC + E HV +II D Sbjct: 123 AELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASA 182 Query: 216 LYIEEIINATIQGKI 230 + +++ ++A + G + Sbjct: 183 ISVDDAVDAILGGDL 197 >gi|86747513|ref|YP_484009.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris HaA2] gi|86570541|gb|ABD05098.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris HaA2] Length = 342 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 2/207 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G D GL+ E + + +DPF+LV L+ E+ S +E NS +F Sbjct: 22 IILLFGPDAGLVRERADALIASALDDPNDPFALVRLDGDELAAEPSRLVDEANSIPMFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I I S + + +E ++ I+I++ +IK +N LRK EK S +AI C Sbjct: 82 RRAIRIRAGS--RSFVAGVETLVASPPKECRIVIEAGDIKPDNALRKACEKAASAVAIGC 139 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD + L LI++ L Q I ++A+ +L+ LGGDR ASRNE++KL+ Y IT Sbjct: 140 YPDAEADLAKLIDDELRAAQLQIGRDARGVLMTLLGGDRQASRNEVRKLALYAHGQGEIT 199 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229 V + D L ++ I++A GK Sbjct: 200 LDDVIACVSDASDLKLDVIVDAAFSGK 226 >gi|27375740|ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA 110] gi|27348878|dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 4/208 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + + +DPFSLV L+ E+ S +E + LF Sbjct: 22 IVLLYGPDAGLVRERADALIASAVDDPNDPFSLVRLDGDELSAEPSRLVDEAMTVPLFGG 81 Query: 83 KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++ I + S +D L E+ +K+ C I+I++ E++ + LRK E+ + +AI Sbjct: 82 QRAIRVRAGSRSFASGIDTLAEMGVKD-CR--IVIEAGELRPESPLRKACERAKTAVAIG 138 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CYPD + L L+++ L I I+++A+ L++ LGGDR ASRNEL+KL+ Y I Sbjct: 139 CYPDTERDLAKLMDDELRIANLRIAQDARAALMSFLGGDRQASRNELRKLTLYAHGKGEI 198 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229 T + V ++ D L ++ I++ G+ Sbjct: 199 TLEDVMAVVADASELKLDPIVDGAFAGR 226 >gi|158422193|ref|YP_001523485.1| DNA polymerase III subunit delta [Azorhizobium caulinodans ORS 571] gi|158329082|dbj|BAF86567.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 337 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/319 (21%), Positives = 154/319 (48%), Gaps = 4/319 (1%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V + +G D GL+ E K + DPF++V L E+ + +E + LF Sbjct: 20 HAVVLIFGPDMGLVRERAAGLVKRVVPDVADPFAVVRLEGDELSGDPQRLIDETQTVGLF 79 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++++ + + + + LE ++ + + ++++++ ++KK LR + E LAI Sbjct: 80 GGERVVWVR--AGSRNFVPALEPVL-EVGGSTLVVVEAGDLKKGAPLRTLCEASPKALAI 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 CY D L L++ L +I ++AK++L++ +GGDR+ASR E+ KL+ Y Sbjct: 137 PCYADGDRDLGKLVDTMLSEAGLAIDRDAKELLVSLIGGDRLASRGEIAKLALYAQGQGR 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T + V+ I+ D L +++++++T+ G+ A + A+L L+ Sbjct: 197 VTLEDVRVIVGDASALALDDVVDSTLAGQAVEATAALAKAWGAATRPDAVLGALLRALSS 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L ++ + + + +++I + + ++ L+ +LR N + +D + A Sbjct: 257 LHQMALQVQAGTPA-DRVIDQARPMVHFSRKPKLERALRSLNAERCLRAILLVDEAVLAA 315 Query: 321 RKKKYLEKNIIFQTILYIA 339 R+ + + I + +L ++ Sbjct: 316 RRNAGMAQAITERVVLQLS 334 >gi|217976533|ref|YP_002360680.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2] gi|217501909|gb|ACK49318.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2] Length = 338 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + E+ KF+++ ++F V++ YG D GL+ E K DPF L+ + + Sbjct: 6 SFEADKFLERPAPHIF----VYLLYGPDAGLVAERARALVKKSVDNPKDPFQLLRIGGDD 61 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + +E N+ LF ++ I IE + + + LE + III++ +K Sbjct: 62 LAADPLRLADEANTIGLFGDRRAIWIE--AQGRAFVTALEPLFAAPPQGSTIIIEAGALK 119 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K+ LR++ E+ S AI+C PD++ + LIE S+S EAK +L + LG DR+ Sbjct: 120 KDAVLRRLCEREKSAAAIACMPDSQEEIAHLIEREAAGAGLSVSPEAKTLLASLLGQDRL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A+R EL+KL Y I +HV+ I+ D L ++ ++ G Sbjct: 180 ATRGELEKLVLYAHGAGAIGLEHVEAIVSDASSLLLDHAVDGAFGG 225 >gi|307943447|ref|ZP_07658791.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4] gi|307773077|gb|EFO32294.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4] Length = 347 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 154/338 (45%), Gaps = 6/338 (1%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E+ +F+ +FIF G D GL+ E Q K S DPF+L ++A EI Sbjct: 8 EADRFVANPPTG---GGVIFIF-GPDTGLVSERATQLVKKASEGDSDPFNLAKIDASEIV 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + LF ++II I+ S K + L+ ++ + +I+I+ ++KK Sbjct: 64 SDPTRLIDEFLTIPLFGGRRIIWIKETSG-KNLSPALDPVLKLDDWPSLIVIEGGDVKKG 122 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LRK+ E +AI CY D + LI+E +IS+EA+ L + LGGDR+AS Sbjct: 123 VGLRKLVESHKRAVAIPCYSDGDRTIDQLIDEETRAANITISREARAALHSLLGGDRMAS 182 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R EL+KL Y L I + +I D E+I+A G + + + Sbjct: 183 RGELKKLCLYTLGKERIETDDIAAVIGDASAFETSELIDAAALGDLATLDHGLERLSEAG 242 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + + L+ FQLL ++ + + +++ I +R + L+IW Sbjct: 243 ANASVIANQALKHFQLLHRMRADVDQGRPA-SQVVDGQRPPIFFARRPGIDRQLQIWATK 301 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + L + ++R L ++ + +L +A+ A Sbjct: 302 DLEKGLSILADATRISRLNDNLGVPVLSEALLTVARAA 339 >gi|254501308|ref|ZP_05113459.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11] gi|222437379|gb|EEE44058.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11] Length = 346 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 148/291 (50%), Gaps = 13/291 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GL+ E ++ S DPF+L+ ++A E+ + S +E+ + LF Sbjct: 22 VVLVFGPDTGLVSERASRLVAKASEGDSDPFNLIKIDASELSSDSSRLIDEVLTVPLFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++I+ +++ + K ++ ++ ++ + ++++++ +IKK LRK+ E +A+ C Sbjct: 82 RRIVWVKD-AGGKNLVPSVDPVLKLDDWQTLVVLEAGDIKKGVGLRKLIEPHKKAVALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y DN + LI+E +IS+EA+ L + LGGDR+ASR EL+KL Y ++ I Sbjct: 141 YADNDRGIDHLIDEETREAGLTISREARAALHSLLGGDRMASRGELKKLCLYAMQKERID 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKI----YNAIMLADFFL-ASKMPSHALLHGFLQK 257 + V+ II D E+I+A G + + L D AS + + AL H Sbjct: 201 TEDVEAIIGDASAFETSELIDAAAGGDLSTLDHGLERLTDAGSKASVIANQALKH----- 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN-KNLVR 307 FQ L ++ I + S ++++ I ++ + LRIW K+L R Sbjct: 256 FQSLHRMRIEIDAGK-SAQQVVDGQRPPIFFSRKPKFSQQLRIWTIKDLER 305 >gi|299133189|ref|ZP_07026384.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2] gi|298593326|gb|EFI53526.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2] Length = 342 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + V + YG D GL+ E + + +DPFS+V ++ E+ + S +E + L Sbjct: 19 ARPVILLYGPDAGLVRERADALLASAVDDPNDPFSMVKMDGDELAADPSRLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++ I I S +D L ++ K+ C I+I++ E++ + LRK E+ + + Sbjct: 79 FGGRRAIRIRAGSRNFASGIDTLADMSPKD-CR--IVIEAGELRPDAPLRKACERSRTAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI+CY D + L LI+E L +IS +A+ L+ LGGDR ASRNE++KL+ Y Sbjct: 136 AIACYADTERDLARLIDEELRPIGATISSDARAALVGLLGGDRQASRNEIRKLALYAHGA 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +T V ++ D L ++ II+ GK A+M A + Sbjct: 196 KEVTLADVAAVVTDASALALDPIIDGAFAGKA--AVMEAAY 234 >gi|209883519|ref|YP_002287376.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5] gi|209871715|gb|ACI91511.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5] Length = 342 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 4/211 (1%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + V + YG D GL+ E + + +DPFS+V ++ E+ + + +E + L Sbjct: 19 ARPVILLYGPDTGLVRERADALLSSAVADPNDPFSMVKMDGDELAGDPARLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++ I I S +D L + K+ C +I+I++ E++ + LRK E+ S + Sbjct: 79 FGGRRAIRIRAGSRNFASAIDTLAGMAPKD-C--MIVIEAGELRPDAPLRKACERSRSAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI+CY D + L LI+E L +I+ +A+ L LGGDR ASRNE++KL+ Y Sbjct: 136 AIACYTDTERDLARLIDEELRANGTTIAADARAALTGLLGGDRQASRNEIRKLALYTHGA 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +T V ++ D L ++ II+ G+ Sbjct: 196 KEVTLADVAAVVTDASALALDPIIDGAFAGR 226 >gi|118591436|ref|ZP_01548834.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614] gi|118436108|gb|EAV42751.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614] Length = 346 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/331 (23%), Positives = 158/331 (47%), Gaps = 4/331 (1%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 I + N + V + +G D GL+ E + S DPF+LV L+A ++ + + Sbjct: 9 IDRFVANPPEAGGVVLIFGPDTGLVSERAARLVNKASEGESDPFNLVKLDASDLGSDPNR 68 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E+ + LF ++I+ +++ S+ + + +E ++ ++ +++++ +IKK LRK Sbjct: 69 LIDEVLTVPLFGGRRIVWVKDASS-RNLNPAVEPVLKQDDWQTLVVLEGGDIKKGVGLRK 127 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + E +A+ CY DN + LI+E S+++EA+ L + LGGDR+ASR EL+ Sbjct: 128 LIEPHKRAVALPCYADNDRGIDQLIDEETREAGLSVTREARAALHSLLGGDRMASRGELK 187 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y L I V+ II D + E+I+A G + + + + Sbjct: 188 KLCLYALNKGRIDSDDVEAIIGDASAFEMSELIDAAASGDLALLDHGLERLAEAGSKASV 247 Query: 250 LLHGFLQKFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 + + L+ FQ L ++ I I++ N + ++ I ++ + LRIW+ + Sbjct: 248 IANQTLKHFQHLHRMRIDIEQGKNA--QAVVDGQRPPIFFSRKPRFTQQLRIWSLTDLER 305 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + ++R L ++ + +L + Sbjct: 306 AMDILSEATRISRLNDALGVPVLSEALLKLG 336 >gi|146337358|ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizobium sp. ORS278] gi|146190164|emb|CAL74156.1| conserved hypothetical protein; putative DNA polymerase III, delta subunit [Bradyrhizobium sp. ORS278] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 2/210 (0%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + YG D GL+ E + DPFS+V L+ E+ S +E + L Sbjct: 19 ARPLILLYGPDAGLVRERAEALIASAVDNPDDPFSVVRLDGDELAAEPSRLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F ++ I + S + +E + N+ + I+I++ +I+ ++ LRKI EK + +A Sbjct: 79 FGGRRAIRVRAGS--RIFASGVETLSQMNVRDCRIVIEAGDIRPDSPLRKICEKAATAVA 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I CYPD + L LI++ L ++ +A+ L+A LGGDR ASRNE++KL+ + + Sbjct: 137 IGCYPDTERDLARLIDDELRTANLRMAPDARSYLMALLGGDRQASRNEIRKLTLFAHGEG 196 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGK 229 +T HV ++ D + ++ I++ GK Sbjct: 197 EVTLDHVMAVVADASEMKLDPIVDGAFGGK 226 >gi|91974914|ref|YP_567573.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB5] gi|91681370|gb|ABE37672.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisB5] Length = 342 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 2/210 (0%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + YG D GL+ E + + +DPF+LV L+ E+ S +E S + Sbjct: 19 ARPIILLYGPDSGLVRERADALIASALDDPNDPFALVRLDGDELASEPSRLVDEAMSIPM 78 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F ++ I + + + + +E + ++I++ +IK +N LRK EK S +A Sbjct: 79 FGGRRAIRVR--AGSRSFVAGVETLAASPPRECRVVIEAGDIKPDNALRKACEKAPSAVA 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I CYPD + L LI++ L I ++A+ +L+ LGGDR ASRNE++KL+ Y Sbjct: 137 IGCYPDAEADLARLIDDELRHSNLQIGRDARAVLMTLLGGDRQASRNEVRKLALYAHGQS 196 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGK 229 IT V + D L ++ I++A GK Sbjct: 197 EITLDDVMACVSDASDLKLDVIVDAAFSGK 226 >gi|85714100|ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A] gi|85699226|gb|EAQ37094.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A] Length = 342 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 6/221 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + YG D GLI E N + +DPFSLV L+ ++ S +E + L Sbjct: 19 ARPIILLYGPDAGLIRERANALMSSAVDDPNDPFSLVRLDGDDLSAEPSRLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++ I I+ S +D L + I++ C I+I++ E+K + LRK E+ + + Sbjct: 79 FGGRRAIRIKAGSRSFASGVDALADSTIQD-CR--IVIEAGELKPESPLRKACERAKNAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI+CYPD + L LI+E + + +A+ L++ LGGDR ASRNEL+K++ Y Sbjct: 136 AIACYPDTERDLARLIDEEFRASKLKTAPDARAALISLLGGDRQASRNELRKIALYTHGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 IT V ++ D ++ +I+A G+ A++ A+F Sbjct: 196 GEITLVDVMAVVSDASDFKLDPVIDAAFAGQ--PAVVEAEF 234 >gi|316931730|ref|YP_004106712.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris DX-1] gi|315599444|gb|ADU41979.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris DX-1] Length = 343 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 3/208 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + DPF+LV L+ E+ S +E + +F Sbjct: 22 IVLLYGPDAGLVRERADALIAASLDDAKDPFALVRLDGDELASEPSRLVDEALAIPMFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VLAIS 141 ++ I + S + + +E +I ++I++ +IK +N LRK+ EK T+ +AI Sbjct: 82 RRAIRVRAGS--RSFVAGVEALIASPPKECRVVIEAGDIKPDNALRKVCEKATTGAVAIG 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CYPD + + LI++ L I K+AK +L LGGDR ASRNEL+KL+ Y + Sbjct: 140 CYPDAEADIARLIDDELRGSSLQIGKDAKAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229 T V + D L ++ I++A GK Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227 >gi|75674292|ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter winogradskyi Nb-255] gi|74419162|gb|ABA03361.1| DNA polymerase III, delta subunit [Nitrobacter winogradskyi Nb-255] Length = 342 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 4/211 (1%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + YG D GL+ E N + +DPFSLV L+ ++ S +E + L Sbjct: 19 ARPIILLYGPDAGLVRERANALISSAVEDPNDPFSLVRLDGDDLAAEPSRLVDEAMTVPL 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++ I I+ S +D L I++ C I+I++ E++ + LRK E+ + + Sbjct: 79 LGGRRAIRIKAGSRSFASGVDTLANSTIQD-CR--IVIEAGELRPESPLRKACERAKNAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI+CYPD + L LI+E L I+ +A+ L++ LGGDR ASRNEL+K++ Y Sbjct: 136 AIACYPDTERDLARLIDEELRASDLKIAPDARAALMSLLGGDRQASRNELRKIALYAHGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229 IT V ++ D ++ +I+A G+ Sbjct: 196 GEITLLDVMAVVSDASDFKLDPVIDAAFAGR 226 >gi|170750489|ref|YP_001756749.1| DNA polymerase III subunit delta [Methylobacterium radiotolerans JCM 2831] gi|170657011|gb|ACB26066.1| DNA polymerase III, delta subunit [Methylobacterium radiotolerans JCM 2831] Length = 345 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 4/209 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GL+ E + ++ DPF+LV ++ + + +E + LF Sbjct: 23 VILVFGPDTGLVTERARKLAEDFVDDPADPFALVRIDGDALAADPGRLCDEAGTMGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I + + + +E ++ + + I++++ ++ KNN LR + E+ LAI C Sbjct: 83 RRSIWVRPGT--RNYAPAVEAVLGATVADARIVVEAGDLAKNNPLRALCERSPKALAIPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDIL 200 Y D++ L DLIE +L I + A+++L +LGGDR AS E++KL+ Y D Sbjct: 141 YADDERTLSDLIERTLQERGLRIDRAAREVLARSLGGDRRASLMEIEKLALYAAGEGDKT 200 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGK 229 +T +HV+ + D + +I+A G+ Sbjct: 201 VTLEHVEAVTSDVAASVLNTLIDAAFDGR 229 >gi|192288723|ref|YP_001989328.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris TIE-1] gi|192282472|gb|ACE98852.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris TIE-1] Length = 343 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 3/208 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + DPF+LV L+ E+ S +E + +F Sbjct: 22 IVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDELAAEPSRLVDEALAIPMFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAIS 141 ++ I + S + + +E +I I+I++ +IK +N LRK EK T +AI Sbjct: 82 RRAIRVRAGS--RSFVAGVEALITSPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIG 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CYPD + + LI++ L I+K+A+ +L LGGDR ASRNEL+KL+ Y + Sbjct: 140 CYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229 T V + D L ++ I++A GK Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227 >gi|39933366|ref|NP_945642.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris CGA009] gi|39652991|emb|CAE25733.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 343 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 3/208 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + DPF+LV L+ E+ S +E + +F Sbjct: 22 IVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDELSAEPSRLVDEALAIPMFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAIS 141 ++ I + S + + +E +I I+I++ +IK +N LRK EK T +AI Sbjct: 82 RRAIRVRAGS--RSFVAGVEALIASPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIG 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CYPD + + LI++ L I+K+A+ +L LGGDR ASRNEL+KL+ Y + Sbjct: 140 CYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229 T V + D L ++ I++A GK Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227 >gi|92115732|ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14] gi|91798626|gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14] Length = 342 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + + DPFSLV L+ ++ S +E + LF Sbjct: 22 IILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGDDLATEPSRLVDEAMTVPLFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I ++ + + +E + I + I+I++ E++ LRK E+ + +AI+C Sbjct: 82 RRAIRVK--AGTRNFAGGIETLADSAIQDCRIVIEAGELRPEAPLRKACERAKNAVAIAC 139 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD + L LI++ L + I+ +A+ L++ LGGDR ASRNEL+K++ Y I Sbjct: 140 YPDTERDLARLIDDELRLSNLKIAPDARATLMSLLGGDRQASRNELRKIALYAHGQREIA 199 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229 V ++ D ++ I++A G+ Sbjct: 200 LDDVMAVVSDASDFKLDPIVDAAFAGQ 226 >gi|300024792|ref|YP_003757403.1| DNA polymerase III subunit delta [Hyphomicrobium denitrificans ATCC 51888] gi|299526613|gb|ADJ25082.1| DNA polymerase III, delta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 347 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 160/328 (48%), Gaps = 19/328 (5%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M I++H+ F++ L + +F+GSD GL+ E + ++ + P ++ Sbjct: 1 MVAIKAHQAESFMKSPPAQLAAA----LFFGSDPGLVSERSTVLARTLAARENPPGEILR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ E+ ++ E+ +F+ ++I+ +++ L + I+ + ++I++ Sbjct: 57 LDDSELDEDTGRLETELQMRPMFASRRIV---RAIAGRRISAQLLKPILSSPFEGLLIVE 113 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + +K ++TLR + EK + A++CYPD + LI E L SI +A+ +L + L Sbjct: 114 AGNLKTDDTLRALFEKTENCFAVACYPDAAADIDGLIAEVLSSFSLSIEGDARALLQSRL 173 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G DR SR E++KL+ + L +IT + V++++ D L +E I A +G+ A+ Sbjct: 174 GADRALSRAEIEKLALHSLGKQMITLEDVENVVGDAADLALERIAEAAAEGRTATAMTDF 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM----KRNI 293 LA+ + A++ Q++ L K+H ++ S++ + + K + P +R+ Sbjct: 234 GRALAAGESAQAIIL-VTQRYFL--KLHKVR--SDVDAGQRLDDALKAVRPPIFFKQRDA 288 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLAR 321 +R W + + + L +I AR Sbjct: 289 FARQIRNWPRPQLDQALRRIAETAKSAR 316 >gi|220921034|ref|YP_002496335.1| DNA polymerase III subunit delta [Methylobacterium nodulans ORS 2060] gi|219945640|gb|ACL56032.1| DNA polymerase III, delta subunit [Methylobacterium nodulans ORS 2060] Length = 342 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 2/207 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ E + ++ DPF+LV L+ + + +E + LF Sbjct: 23 VILVYGPDTGLVAERARRLAESAVADPSDPFALVKLDGDTLAGDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I + S + +E ++ + I++++ ++ K+ LR + E+ LA+ C Sbjct: 83 QRAIWVRPGS--RNYAPAVEAVLKAELAATRIVVEAGDLAKSAPLRALCERSQRALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD+ L +LI+ L I+++A+++ +A+LGGDR AS E++KL+ Y IT Sbjct: 141 YPDDARTLAELIDSRLQDEGLRIARDAREVFVASLGGDRRASLGEIEKLALYARGRGEIT 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229 + V+ I D + +I+A G+ Sbjct: 201 LEDVEAIASDVSGSALNALIDAAFAGQ 227 >gi|170739701|ref|YP_001768356.1| DNA polymerase III subunit delta [Methylobacterium sp. 4-46] gi|168193975|gb|ACA15922.1| DNA polymerase III, delta subunit [Methylobacterium sp. 4-46] Length = 342 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ E + DPF+LV ++ + + +E + LF Sbjct: 23 VILVYGPDTGLVAERARSLAEGAVADPSDPFALVKIDGDVLAGDPGRLLDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I + S + + +E ++ + +++++ ++ K+ LR + E+ LA+ C Sbjct: 83 QRAIWVRPGS--RPIAPAVEALLKAELPAARVVVEAGDLAKSAPLRVLCERSPRALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD+ L DLI+ L I+++A++ L A+LGGDR AS E++KL+ Y I+ Sbjct: 141 YPDDARTLADLIDARLQAEGLRIARDARETLAASLGGDRRASLGEIEKLALYARGQREIS 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + V+ + D + +I+A G+ A Sbjct: 201 LEDVEAVASDVSGSVLNALIDAAFAGQAGEA 231 >gi|328541705|ref|YP_004301814.1| DNA polymerase III, delta subunit [polymorphum gilvum SL003B-26A1] gi|326411457|gb|ADZ68520.1| DNA polymerase III, delta subunit [Polymorphum gilvum SL003B-26A1] Length = 347 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/331 (22%), Positives = 151/331 (45%), Gaps = 12/331 (3%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D GL+ E ++ S DPFSL L+A ++ + +E + LF ++ Sbjct: 24 LVYGPDTGLVSERAQALVESASDGSDDPFSLARLDAADLASDPDRLIDEALTVPLFGGRR 83 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +I + + + + ++ + ++ C ++I++ ++KK LRK+ E +A+ CY Sbjct: 84 VIWVRD-AGGRNLVPAVAPLLKLADCPAFVVIEAGDLKKGTGLRKLFEADRRAVALPCYA 142 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 D + LI+E + +IS+EA+ L LG DR+ASR EL+KL Y I Sbjct: 143 DTGRDIDYLIDEETRLAGLTISREARAALHGLLGADRMASRGELRKLCLYAHGRQRIDTD 202 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAI-----MLADFFLASKMPSHALLHGFLQKFQ 259 + II D + E+I+A G + + A+ AS + AL+H FQ Sbjct: 203 DIAAIIGDASAFEMSELIDAAAGGDLAALDHGLERLEAEGGNASVIAGQALVH-----FQ 257 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L ++ + + +I+ + ++ L +++W+ + + + ++ + Sbjct: 258 GLHRMRAEFDAGTPA-AQIVDAARPPVFFKRKAALARQIQLWSAADLDKAMERLAEAMRT 316 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350 AR + ++ + +L +A+ A + + Sbjct: 317 ARLNDRIGMPVLSEALLTLARVARARGSARR 347 >gi|323137157|ref|ZP_08072236.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242] gi|322397515|gb|EFY00038.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242] Length = 339 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 135/306 (44%), Gaps = 26/306 (8%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQ 64 + KF+ +FL F+ +GSD G++ E + K + DPF V ++ + Sbjct: 9 AEKFVSAPPDGVFL----FLVFGSDAGMVRERALTIVSKRVD-DRRDPFQFVEMSGDAVS 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + +E N+T LF ++ IL+E + K V+ + +I +++ + +K++ Sbjct: 64 ADPLALLDEANTTPLFGGRRAILVE--TGAKSVIPAVTSLISAPPAACTVVLTAGALKRD 121 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LRK+ E I C PD + L LI+ +L EA+ +LLA LG DR+ S Sbjct: 122 APLRKLVEGAKQGAGIECQPDTEHDLHALIDRTLREAGLVAGPEARGLLLAALGEDRLMS 181 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R EL KL+ Y + V+ I+ + + ++ A G++ L +F Sbjct: 182 RGELTKLALYMHGREHVEAADVEAIVAHASGVASDRVVTAAFGGEV--GATLESYFAQGG 239 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP--------MKRNILQE 296 P A+L G ++ L + + ++ E+ +T+ + M R +L+E Sbjct: 240 DPG-AILFGAMRYAVALHR-------ARLAMEREGGRTDAGVTVLMRAGFGFMHRALLEE 291 Query: 297 SLRIWN 302 L+ W Sbjct: 292 HLKRWT 297 >gi|315122026|ref|YP_004062515.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495428|gb|ADR52027.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 86 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 64/86 (74%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I S++F +KS L S+FVFIFYGSDKGLIFEL+NQFKK I + +HD F VVLNA Sbjct: 1 MVAIRSNEFTKKSIDQLLTSYFVFIFYGSDKGLIFELVNQFKKRIGVLHHDQFYFVVLNA 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII 86 L+IQ+N WNE+ S SLF++KK+ Sbjct: 61 LDIQENPEILWNEVKSISLFNEKKLF 86 >gi|83594958|ref|YP_428710.1| DNA polymerase III subunit delta [Rhodospirillum rubrum ATCC 11170] gi|83577872|gb|ABC24423.1| DNA polymerase III, delta subunit [Rhodospirillum rubrum ATCC 11170] Length = 342 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 118/243 (48%), Gaps = 5/243 (2%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D+GL+ E + Q + + DPF + L+ +++ + + +E + + ++ Sbjct: 23 LVYGPDEGLVRERLEQLARTVVADPKDPFRITDLSGDDLRADPARLADEAAALAFGGGRR 82 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 ++ + ++ + L+ + + +++++ ++ + LRK+ E ++ A+ CY Sbjct: 83 LVRLRQMTDQHAPR--LKAFVEAPVGEALVLVQGGDLTARSALRKLFEGASAAAALPCYA 140 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 D L L+ +L + + + E L+ANLGGDR SR+EL KL +YC + ++ Sbjct: 141 DEGRSLETLVRATLAEARLAAAPEVIDYLVANLGGDRGVSRSELAKLVTYCGKATSVSLD 200 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 + D+ + ++ + NA +G A+ D M + ALL G + F ++ Sbjct: 201 DALACVGDSAQIGLDMLTNAVAEGDSATALRALDRLGQEGMATVALLRGLTRHFT---RL 257 Query: 265 HII 267 H++ Sbjct: 258 HLV 260 >gi|296446252|ref|ZP_06888199.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b] gi|296256289|gb|EFH03369.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b] Length = 343 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 13/302 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEI 63 E+ +F+ +FL F+ +G+D GL+ E + K + DPF + ++ + Sbjct: 8 EAQRFVDAPPAAIFL----FLLHGADAGLVRERALALIAKRVD-DRRDPFQCIEMSGDAV 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + +E N+ +F ++ IL+E S K + LE+++ + +++ + +K+ Sbjct: 63 AADPLSLLDEANTVPMFGGRRAILVEAGS--KSINAPLEQLLAAPPRDCAVVVTAGVLKR 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LRK+ E AI C PD + L LI+ESL + + EA+ +L A LG DR Sbjct: 121 DAPLRKLIEPAKLGAAIECQPDAEQDLEALIDESLRAAGLAATPEARMLLRAALGEDRRM 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SR EL KL+ Y + + + V+DI+ + + ++ G A D LA Sbjct: 181 SRAELAKLALYKHGETTVEAKDVEDIVAHASAIASDRLVIDAFSGVAAAAGEELDRALAG 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK---IIQKTEKNIIPMKRNILQESLRI 300 LL G L+ L + + + + I+ ++ + P R L+ L+ Sbjct: 241 GADPGQLLGGALRYAMALHRARLAADREGGRTDAGVTILMRSGFGVFP--RPALERHLKS 298 Query: 301 WN 302 W Sbjct: 299 WT 300 >gi|23011672|ref|ZP_00051963.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ ++ + + +E + LF Sbjct: 23 VVLVYGPDTGLVADRATRLVRGMVSDPDDPFALIRIDGDALASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLGRSAPLRTLCEGSARALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YPDDERTLADLIERTLQDDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGTVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + V+ I+ D + +I+A G+ A Sbjct: 201 VEDVEAIVSDVGASVLNALIDAAFAGRASEA 231 >gi|188580906|ref|YP_001924351.1| DNA polymerase III subunit delta [Methylobacterium populi BJ001] gi|179344404|gb|ACB79816.1| DNA polymerase III, delta subunit [Methylobacterium populi BJ001] Length = 343 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ ++ + + +E + LF Sbjct: 23 VVLVYGPDTGLVADRAARLVRGMVADPDDPFALIKIDGDTLASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSAKALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + V+ I+ D + +I+A G+ A Sbjct: 201 VEDVEAIVSDVGASVLNALIDAAFAGRAGEA 231 >gi|115522416|ref|YP_779327.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisA53] gi|115516363|gb|ABJ04347.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 4/210 (1%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + +G+D GL+ E K+ HDPF+LV L+ +I S +E + + Sbjct: 19 ARPIILLFGADSGLVRERAEALIKSAVDDPHDPFALVRLDGDDIAAEPSRLVDEALTIPM 78 Query: 80 FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++ I + S ++ L E +K+ C ++I++ ++K + LRK E+ + + Sbjct: 79 FGGRRAIRVRAGSKSFVSSVEALSESALKD-CR--VVIEAGDLKADAALRKTCERAKNAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I CY D+ + LI+E L I ++ +A+ IL A LGGDR +SRNEL+KL+ Y Sbjct: 136 TIPCYLDDARAIGSLIDEELRIANLRLAPDARAILAALLGGDRQSSRNELRKLTLYAHGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQG 228 IT V + D L ++ +++ G Sbjct: 196 SEITLDDVIACVSDASDLKLDPVVDYAFAG 225 >gi|90421810|ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB18] gi|90103824|gb|ABD85861.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisB18] Length = 342 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 2/207 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + YG D GL+ E + DPFS V L+ E+ S +E + +F Sbjct: 22 IILLYGPDAGLVRERAEALIASAVDDPSDPFSTVRLDGDELAAEPSRLVDEAMTIPMFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ I + + K + +E + + + + I+I++ ++K + LRK E+ + +AI C Sbjct: 82 RRAIRVR--AGSKNFVSGVETLALSALKDCRIVIEAGDLKPDAALRKACERAKTAVAIGC 139 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D + L L+++ I+ + + +L++ LGGDR ASRNE++KL Y +T Sbjct: 140 YTDGERDLAKLVDDEFRNANLRIAPDVRALLVSLLGGDRQASRNEVRKLVLYTHGQSEVT 199 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229 V ++ D L ++ +I+ GK Sbjct: 200 LDDVMAVVADASELKLDPVIDGAFAGK 226 >gi|240138145|ref|YP_002962617.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens AM1] gi|240008114|gb|ACS39340.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens AM1] Length = 343 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ ++ + + +E + LF Sbjct: 23 VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 V+ I+ D + +I+A G+ A Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231 >gi|254560707|ref|YP_003067802.1| DNA polymerase III subunit delta, holA [Methylobacterium extorquens DM4] gi|254267985|emb|CAX23853.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens DM4] Length = 343 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ ++ + + +E + LF Sbjct: 23 VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 V+ I+ D + +I+A G+ A Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231 >gi|114326671|ref|YP_743828.1| DNA polymerase III subunit delta [Granulibacter bethesdensis CGDNIH1] gi|114314845|gb|ABI60905.1| DNA polymerase III, delta subunit [Granulibacter bethesdensis CGDNIH1] Length = 351 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 7/284 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG D GL+ E + ++ DPF ++ L A + + NE+ SL Sbjct: 21 AVLLYGDDHGLVRERGTSLTRLVAGQIDDPFRVIELAA----EQAADLPNEMAGLSLTGG 76 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I I + + + ++ ++I+++ + + LR +AEK S +I+C Sbjct: 77 RRVIRIREAA---DIFAAPLQAGLERQGEALVILEAGTLTPRSKLRVLAEKMASAASIAC 133 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD L I++SL + SI +A + L +LG DR +R E+ KL+ Y +D T Sbjct: 134 YPDEGRSLSQTIQDSLARDRVSIEADALKWLCDHLGADRALTRREIDKLALYVGQDGTAT 193 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + I D L +E+ + A++ G I A L+ S A++ LQ Q L Sbjct: 194 IEAAHACIGDLAGLSLEDALYASVIGDISGAERALSLALSEGTTSIAVVRMALQHMQRLR 253 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 K+ + + + S + +++ + + + ++L +W ++ Sbjct: 254 KLRAVMQENGTSAAEAVRQAKPPVFFKRVPAFTKALTLWRDEML 297 >gi|163851014|ref|YP_001639057.1| DNA polymerase III subunit delta [Methylobacterium extorquens PA1] gi|163662619|gb|ABY29986.1| DNA polymerase III, delta subunit [Methylobacterium extorquens PA1] Length = 343 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ + + + +E + LF Sbjct: 23 VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIEGDTLASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YPD++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 V+ I+ D + +I+A G+ A Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231 >gi|163796493|ref|ZP_02190453.1| DNA polymerase III [alpha proteobacterium BAL199] gi|159178343|gb|EDP62887.1| DNA polymerase III [alpha proteobacterium BAL199] Length = 347 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/260 (23%), Positives = 121/260 (46%), Gaps = 10/260 (3%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F+++ L V I YG D G + E + +++ DPF++ VL+ E + Sbjct: 7 ELEGFVRQPPAGL---RGVLI-YGPDGGKVRETAERIGRSVVTDLSDPFNVTVLSGDEAE 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + SL ++++ + + + + L + +++++++++K Sbjct: 63 ADPARVADEAAARSLMGGRRLVRVRD--ARDRTAEALANAFSGPDTDTLVVVEASDLKAG 120 Query: 125 NTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 LRK+ E K + + AI+CY D+ L ++ +S ++ +A Q LL LG DR+A Sbjct: 121 TGLRKLFEDKRSDLAAIACYADDARDLARVLRDSFEAAGVRVASDANQFLLERLGSDRMA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLA 242 +R EL KL+ + ++ + + + D L I+ +I A G+ + D F Sbjct: 181 TRTELDKLALMVGQGGVLDLETAMEAVGDGAALEIDSLITAAADGRPEGIVSGLDRAFRQ 240 Query: 243 SKMPSHAL--LHGFLQKFQL 260 + P L G+ Q+ L Sbjct: 241 GESPIRVLRTAQGYFQRLHL 260 >gi|218682742|ref|ZP_03530343.1| DNA polymerase III subunit delta [Rhizobium etli CIAT 894] Length = 212 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 109/201 (54%) Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 S++ I Y D+ L LI+ L + I+ A+Q L+A +GGDRIASRNE++KL+ YC Sbjct: 1 SIMTIPSYADDSRALNALIDTELGTEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 60 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + E HV +II D + +++ ++A + G + + +SK +L L Sbjct: 61 RGYPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNAFLHAMQKISSSKTAIFLVLQACL 120 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++FQLL+ + E + +I+Q +++ ++ I++++LR W + +++ Sbjct: 121 KQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQALRHWTAESIARESNRLQA 180 Query: 316 RIHLARKKKYLEKNIIFQTIL 336 I +R+++ LE ++ QT+L Sbjct: 181 AILQSRRRQVLEDSVAMQTLL 201 >gi|218529841|ref|YP_002420657.1| DNA polymerase III subunit delta [Methylobacterium chloromethanicum CM4] gi|218522144|gb|ACK82729.1| DNA polymerase III, delta subunit [Methylobacterium chloromethanicum CM4] Length = 343 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 2/211 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YG D GL+ + + + + DPF+L+ ++ + + +E + LF Sbjct: 23 VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + S + ++ ++ I++++ ++ ++ LR + E LA+ C Sbjct: 83 SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D++ L DLIE +L I ++A+ +L +LG DR AS +E+ KL+ Y + Sbjct: 141 YTDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 V+ I+ D + +I+A G+ A Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231 >gi|144900373|emb|CAM77237.1| DNA polymerase III, delta subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 341 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/294 (21%), Positives = 133/294 (45%), Gaps = 9/294 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + +G D GL+ E + K + +DPF + L A ++ + + +E + +L Sbjct: 21 AILVFGPDNGLVRERAVKLAKTVLPDLNDPFRVAELTAAALKDDPARLADEAAAMALTGG 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++++ + L L + + N + ++++++ E+ ++LRK+ E + +A++ Sbjct: 81 RRVVMVRDAG---DTLSSLFQSFLDNPTGDAMVVVEAGELGPRSSLRKLFEGAANAVALA 137 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 Y D L +I E L + S +A L+ +LGGDR +R+ELQKL+ Y I Sbjct: 138 SYADEGASLQQVIAEELKVSGLSAEADAMSFLMDHLGGDRRLTRSELQKLALYMGGPGRI 197 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + + I DT L ++++ AT G A + D A+L + FQ Sbjct: 198 SLEDAIACIGDTAALSMDDLSLATADGDHGTAQRVLDRLTREGTSPVAVLRALSRHFQ-- 255 Query: 262 EKIHIIKECSNI--SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++H+ + S ++ + + +I + + L W+ + L ++ Sbjct: 256 -RLHLAAGTMAMGKSADQAMNALKPPVIFKAADRFRRQLSRWSAERAGQALERL 308 >gi|294085218|ref|YP_003551978.1| DNA polymerase III subunit delta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664793|gb|ADE39894.1| DNA polymerase III, delta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 344 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 5/212 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 F+F+G+D GLI E + S D FS+ L++ I+ ++S + ++S ++F+ Sbjct: 21 AFLFHGNDIGLIHERALALASHYSDNLDDVFSVTRLDSRAIENDVSVIADALSSIAVFAD 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 +++L+ TE V C + ++ + ++I+++ E + + K+ E Sbjct: 81 TRLVLVRGRGTEL-VEACKLALTPRDNTPPLEGAVLIVEARETTTRHAIVKLFETGDICA 139 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +I CY D+ + DL++ S +I + +++A LG DR +SR E++KLS + Sbjct: 140 SIGCYADDSGTIRDLVQTSFAALSINIDRPVMDLIVAKLGADRASSRREIEKLSLMAGQG 199 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 +T Q ++D + D+ VL I+++ A G I Sbjct: 200 GTLTAQDIEDALEDSTVLAIDDVAGAVADGDI 231 >gi|209965831|ref|YP_002298746.1| DNA polymerase III subunit delta [Rhodospirillum centenum SW] gi|209959297|gb|ACI99933.1| DNA polymerase III, delta subunit, putative [Rhodospirillum centenum SW] Length = 345 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 74/334 (22%), Positives = 153/334 (45%), Gaps = 19/334 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +FYG D GL+ E Q + + DPF + L + +I + + +E+ + +L Sbjct: 21 AVLFYGPDSGLVRERAAQLCRTVVEDLSDPFRVAELKSDQIAADPARLHDEMAAIALTGG 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNI--CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++++ L + L ++K++ + ++++++ ++ K + LR +AE+ S AI Sbjct: 81 RRLV---RLRDAEDALAAALGRLLKDLPAGDSLLVVEAGDLGKASKLRALAEEADSAAAI 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLE 197 +CY + + L + L +I +A+ L NL GDR+ +RNE+ KL+ Y + Sbjct: 138 ACYVEGEEELAGTVARILGEHGLAIDPDARAWLAGNLVGDRVMARNEIDKLALYMASAPK 197 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +T + V+ ++ D+ L +EE A G + A S ALL + Sbjct: 198 GAKVTLEDVRAVVGDSAALELEEPALAAADGDMAAVDRSLRRLFAEGTASVALLRTAQRH 257 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIP-----MKRNILQESLRIWNKNLVRETLHK 312 FQ ++HI ++++ + Q+ K++ P M+ L +R W L+++ L + Sbjct: 258 FQ---RLHIA--VAHVARGQTPQQAVKSLRPPVFFKMEAQ-LTSQVRRWTLPLLQQALTR 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + ++ ++ I + +AQ A + Sbjct: 312 LLEAEADCKRTNMPDETICARAFFQLAQLARRGG 345 >gi|83309128|ref|YP_419392.1| DNA polymerase III subunit delta [Magnetospirillum magneticum AMB-1] gi|82943969|dbj|BAE48833.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 340 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 2/239 (0%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + +G D GL+ E + + +++ DPF + L +++ S +E + +L Sbjct: 21 AVLVFGPDLGLVRERVQRLIRSVVPDASDPFRVAELTPAALKEVPSRLADEAAAMALGGG 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ +++ + + + + + + + +++I+ E+ ++LRK+ E + A++C Sbjct: 81 RRAVVLRDAGDGQS--GAVSSFLARPMGDALVVIEGGELGPRSSLRKLFEGADNGAALAC 138 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D L +I+E L +A L +LGGDR +R EL KL+ Y ++ Sbjct: 139 YGDEGGSLAGVIQEELKAAGLMAEPDAMAYLTEHLGGDRRLTRAELGKLALYMGGPGRVS 198 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + DT L ++++ AT G A + D L +L + FQ L Sbjct: 199 LDDAVACVGDTAALGLDDLALATADGDHAGAQRVLDRLLREGGQPVGMLRSVARHFQRL 257 >gi|23016031|ref|ZP_00055792.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum magnetotacticum MS-1] Length = 340 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 8/242 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + +G D GL+ E + + +++ DPF + L ++ S +E + +L Sbjct: 21 AVLVFGPDLGLVRERVQRLIRSVVPDTSDPFRVAELTPAALKDIPSRLADEAAAMALGGG 80 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++++ + + + + + + + +++I+ E+ ++LRK+ E + A++C Sbjct: 81 RRVVVLRDAGDGQS--GAVSSFLARPMGDALVVIEGGELGPRSSLRKLFEGADNAAALAC 138 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D L +I+E L +A L +LGGDR +R EL KL+ Y + Sbjct: 139 YGDEGGSLAGVIQEELKSAGLMAEPDAMAYLTEHLGGDRRLTRAELGKLALYMGGPGRV- 197 Query: 203 EQHVKDIIC---DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 H++D + DT L ++++ +T G A + D L +L + FQ Sbjct: 198 --HLEDAVACVGDTAALGLDDLALSTADGDHAGAQRVLDRLLREGSQPVGMLRSVARHFQ 255 Query: 260 LL 261 L Sbjct: 256 RL 257 >gi|83944974|ref|ZP_00957340.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii HTCC2633] gi|83851756|gb|EAP89611.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 119/256 (46%), Gaps = 12/256 (4%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S+ V++ YG D G++ E + K + DPFS+ L +I+ + + + + + SL Sbjct: 18 SYTVYLIYGPDGGMVRERADTLSKALVKDPDDPFSVTRLTDEDIKADPAALADALAALSL 77 Query: 80 FSKKKII---LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++ L + + K++ ++E + + ++I+S ++KK + LRK AE Sbjct: 78 TRDPRLVRLRLSGDSAPVAKLIAEVDEGVTPS--EATLVIESGDLKKTSKLRKAAEDGKR 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC- 195 LA CY D L+ L E+ ++ EA+ +L L GDR +R+E+ KL Y Sbjct: 136 TLAAPCYADTARDLITLAEDMFRAEHLTLEPEARAMLAPFLEGDRALARSEIDKLILYKG 195 Query: 196 ------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +D +IT Q + DI +++I++ + G I A L++ + Sbjct: 196 LADQREGQDDVITRQDIADISAVGSEAAMDQILDPALGGDIRAADAAYARGLSAGLNPVG 255 Query: 250 LLHGFLQKFQLLEKIH 265 +L G ++ + H Sbjct: 256 VLRGLQRRIDQFDTFH 271 >gi|329113641|ref|ZP_08242419.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001] gi|326697048|gb|EGE48711.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001] Length = 337 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/280 (22%), Positives = 122/280 (43%), Gaps = 8/280 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G D GLI E I+ + DPF + VL+ ++ E + SL Sbjct: 20 ILLLHGEDTGLIKERAQDAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSLMGG 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + S VL LE + ++ + +II+++ + + LR EK + +I C Sbjct: 76 RRVVRVRDAS--DTVLKPLEAFLAQS-SDTLIILEAPGLSSRSKLRNFLEKHANCASIGC 132 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YP+ +L I L + I+ +A L + LG DR A+R+E++KL Y + +T Sbjct: 133 YPEEGRNLESSITHMLTEHKVRIASDALHWLTSRLGADRAAARSEIEKLCLYAGDSGSLT 192 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 V+ I D + +E+ A +G A + LA A+ FL L Sbjct: 193 LDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLHRLR 252 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 ++ + +S ++ + + ++L +W+ Sbjct: 253 RVRAAM-AAGVSRSDAVKALRPPVFFKRTASFNKALELWS 291 >gi|148261040|ref|YP_001235167.1| DNA polymerase III subunit delta [Acidiphilium cryptum JF-5] gi|326404439|ref|YP_004284521.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301] gi|146402721|gb|ABQ31248.1| DNA polymerase III, delta subunit [Acidiphilium cryptum JF-5] gi|325051301|dbj|BAJ81639.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301] Length = 334 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 102/215 (47%), Gaps = 10/215 (4%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + FV + YG D L+ E + K ++ + DPF L L+A ++ E + + Sbjct: 18 ARFVLV-YGPDTSLVAERARRLAKLVAGSLDDPFRLTELDADTAER----LPEEAGAQAF 72 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++L+ + + +++V E ++ + +I+ ++ + LR +AEK A Sbjct: 73 GGGRRVVLLRD-AGDRQVAPV--EAALEGKGDALIVAIGGDLPGRSKLRALAEKHAEAAA 129 Query: 140 ISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+CY PD +E +L I +EA + + LGG+ A R+ ++L+ Y + Sbjct: 130 IACYLPDGAAR-GPALEAALRAAGVGIGREALALAASRLGGETGALRDAAERLALYAGPN 188 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + + V+ ++ D +++ I+A + G + A Sbjct: 189 GAVDIEAVEAVLDDQGSASMQDAIDAALAGDVKAA 223 >gi|114571498|ref|YP_758178.1| DNA polymerase III subunit delta [Maricaulis maris MCS10] gi|114341960|gb|ABI67240.1| DNA polymerase III, delta subunit [Maricaulis maris MCS10] Length = 350 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 16/241 (6%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 S + KN S ++ YG D+GL E + I DPF+L L +++ Sbjct: 4 SAREADARVKNPDPSIRAYLIYGPDRGLTHERAQTLVRAILEDPDDPFALTQLTEEDLKS 63 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI------CNHIIIIKSN 119 + + + + + SL K+++ + L+ E +E IIK + +++++S Sbjct: 64 DPAGLADAMAALSLTGGKRLVRV-RLTGETGSGPIIE--IIKGLESGSETAEAVLLVESG 120 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 ++ LRK E + I+CY D L L E L + +++EA+ L L G Sbjct: 121 DLTPRGKLRKAFEPAKKAITIACYADTSHSLESLCESMLKVEGLQLAREARTEWLPRLEG 180 Query: 180 DRIASRNELQKL-------SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 DR +R E++KL S D IT + V+ + D ++ ++ T+ G + Sbjct: 181 DRALARGEIEKLILYKGLRSQRAEGDDTITREDVEAVAADQGEAQLDAVLAPTLLGLLAK 240 Query: 233 A 233 A Sbjct: 241 A 241 >gi|258543601|ref|YP_003189034.1| DNA polymerase III subunit delta [Acetobacter pasteurianus IFO 3283-01] gi|256634679|dbj|BAI00655.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256637735|dbj|BAI03704.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256640789|dbj|BAI06751.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643844|dbj|BAI09799.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646899|dbj|BAI12847.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649952|dbj|BAI15893.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652942|dbj|BAI18876.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655996|dbj|BAI21923.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 337 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 8/280 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G D GLI E I+ + DPF + VL+ ++ E + SL Sbjct: 20 ILLLHGEDTGLIKERAQNAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSLMGG 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + S +L LE + +N + ++I+++ + + LR EK + +I C Sbjct: 76 RRVVRVRDAS--DALLKPLEAFLAQN-SDTLVILEAPGLSSRSKLRGFLEKHPNCASIGC 132 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YP+ +L I L I +A L + LG DR A+R+E++KL Y + +T Sbjct: 133 YPEEGRNLESSITRMLAEHNVRIDSDALHWLTSRLGADRAAARSEIEKLCLYAGDTGNLT 192 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 V+ I D + +E+ A +G A + LA A+ FL L Sbjct: 193 LDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLHRLR 252 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 ++ + +S + ++ + + +L +W+ Sbjct: 253 RVRAAM-AAGVSRSEAVKALRPPVFFKRTASFNRALELWS 291 >gi|330993122|ref|ZP_08317060.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1] gi|329759892|gb|EGG76398.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1] Length = 340 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/284 (20%), Positives = 124/284 (43%), Gaps = 10/284 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GLI E K I HDPF + +L + + + E+ + SL Sbjct: 20 VIMLHGDDVGLIRERATTAAKAICPDLHDPFRVAMLG----RADHARLEEEMTALSLTGG 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I + T++ +L+ L+ + + + ++I+++ + + LR EK I C Sbjct: 76 RRVIWLRE-GTDEGLLEALKRGLAQQ-SDALVIVEAPGLDSRSRLRGFVEKDAQCALIGC 133 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YP+ L I + L I +A ++ G DR A+R+E++KL+ + + Sbjct: 134 YPEEGRALEGAIRQMLAAQDVGIDPDALGWMVERAGPDRAATRSEVEKLALFAGRGGRLG 193 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA--SKMPSHALLHGFLQKFQL 260 + V+ + D + +E+ A + G+ A A L PS+ L + Sbjct: 194 LEDVRACVGDAAGVSMEDAAFAAMAGQRREADAAAQRALTVDGSSPSN-LTRALMSHIHR 252 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L + + + + +S +++ + + + + ++L +W + Sbjct: 253 LRRARLAMD-AGMSRADAMRQLQPPVFFKRTDSFGQALGLWPAD 295 >gi|288959463|ref|YP_003449804.1| DNA polymerase III subunit delta [Azospirillum sp. B510] gi|288911771|dbj|BAI73260.1| DNA polymerase III subunit delta [Azospirillum sp. B510] Length = 341 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/296 (20%), Positives = 129/296 (43%), Gaps = 16/296 (5%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D GL+ + K + DPF + + + + +E + S ++ Sbjct: 23 LLYGPDSGLVRDRAQTLGKTVVPDLSDPFRVAEFLGRALADDPARLADEAAAISFTGGRR 82 Query: 85 IILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 +I + + E + + ++++++ ++ + LR + E + AI CY Sbjct: 83 LIRVRDAEDNCAAAFTAFLESLPPG--DSLVVVEAGDLSARSKLRLLFEGDDAAAAIPCY 140 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + + L +I + L + + L ANL GDR+ +R E++KL+ Y +D + Sbjct: 141 VEEEASLGRVIADILQGHGLTADPDVLGFLAANLVGDRMVARGEVEKLALYMGKDKRVRL 200 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYN-AIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + + I D+ L ++E + A +G LA F P +L G + FQ L+ Sbjct: 201 EDAQACIGDSAALSMDEPVWAAAEGDFATLDRSLARLFAEGTSPVP-ILRGAQRHFQRLQ 259 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIP-----MKRNILQESLRIWNKNLVRETLHKI 313 + C ++ K + +++ P +K +++++ R W+ N VR+ L ++ Sbjct: 260 LL-----CVQVAAGKSPEAAVESLRPPVFFKLKTRLVKQA-RHWSSNHVRQALERL 309 >gi|218660469|ref|ZP_03516399.1| DNA polymerase III subunit delta [Rhizobium etli IE4771] Length = 178 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 87/162 (53%) Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 +V+ + Y D+ L LI+ L + I+ A+Q L+A +GGDRIASRNE++KL+ YC Sbjct: 6 AVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 65 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + E HV +II D + +++ ++A + G + + +SK +L L Sbjct: 66 RGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFLVLQACL 125 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 ++FQLL+ + E + +++Q +++ ++ IL++ Sbjct: 126 KQFQLLDTMRAEMEEKRLQAPQVMQTMGRHLHFRRKPILEQG 167 >gi|295691569|ref|YP_003595262.1| DNA polymerase III subunit delta [Caulobacter segnis ATCC 21756] gi|295433472|gb|ADG12644.1| DNA polymerase III, delta subunit [Caulobacter segnis ATCC 21756] Length = 350 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 97/192 (50%), Gaps = 11/192 (5%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +F+++ T ++ + YG D+G++ + N K + DPF L +++ + Sbjct: 10 ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALAKRVVERPDDPFDTAQLTESDVEAD 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120 + +E+++ SL ++++ + L+ EK D E + +++ H+ +I++ Sbjct: 66 PAKLEDELSAMSLMGGRRLVRL-RLNGEKAGPDKAAAEAVTRHVEGHLNPDAFFLIEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK + I CY D L L ++L + S++ EA + ++ L + Sbjct: 125 LGRDSQLRKVGEKASGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALDLFVSRLPKE 184 Query: 181 RIASRNELQKLS 192 R +R E+++L+ Sbjct: 185 RGVARAEIERLA 196 >gi|312115575|ref|YP_004013171.1| DNA polymerase III subunit delta [Rhodomicrobium vannielii ATCC 17100] gi|311220704|gb|ADP72072.1| DNA polymerase III, delta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/321 (19%), Positives = 143/321 (44%), Gaps = 7/321 (2%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+FYGSD I + + L L+ ++ + E+ + SLF Sbjct: 23 FLFYGSDALQIAARAEALSRALLKKLGPDAELARLHDTDLAADPDRVIVELTTRSLFGGT 82 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 +I+ + +L + + + +++ I + +I ++ ++KK++ L + E + AI+CY Sbjct: 83 RIVWLTSLPAKAQAI--VQDAIARPFDGAFLIAQAPDMKKSHKLAQSFEAAPYLAAIACY 140 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 +++ ++ I I EA ++ A + +R E +KL +Y ED IT Sbjct: 141 GEDRDSVVAGIRHQAAEAGYEIDGEAAALVAARCDCSALLARAETEKLITYAGEDRCITA 200 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+D + D + +I++A + G AI+ + ++A++ + F+ L + Sbjct: 201 AQVEDCLNDQQTAGLSDIVDAALDGDGRKAILAFERYMAAEANVSPV---FVVLASSLLR 257 Query: 264 IHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 +H ++ + S + I++ + +++ L +R W + L ++ + R Sbjct: 258 LHALRAAVDAGASPMQAIKELRPPVFFKQQDALAAQVRKWTVPALAARLGDLNAALRDTR 317 Query: 322 KKKYLEKNIIFQTILYIAQTA 342 K L ++I + +L +A+ A Sbjct: 318 LKPALAEDIAARFLLTVAKEA 338 >gi|58038887|ref|YP_190851.1| DNA polymerase III subunit delta [Gluconobacter oxydans 621H] gi|58001301|gb|AAW60195.1| DNA polymerase III, delta subunit [Gluconobacter oxydans 621H] Length = 334 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 11/230 (4%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S + +G D GLI E Q + ++ T DPF + L+ E Q + E + SL Sbjct: 18 SWRAIVLHGEDTGLIRERAAQAVRLVAGTTDDPFQVAQLD-RETQDRLE---EEATALSL 73 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + L L + +++ +I+I++ I + LR +AE V + Sbjct: 74 IGGRRVVWVRE---GQDSLAPLFKRVLETDTETLIVIEAPGITARSKLRALAEAHKQVAS 130 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+CYP+ L + ++L +I ++A L LG DR R E++KL Y E+ Sbjct: 131 IACYPEEGRALSQTVTDALGQAGVTIDRDALIWLTGVLGSDRSGVRGEIEKLVLYAGENG 190 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + Q V+D + D +E+ + + G M+AD L + A Sbjct: 191 RLDLQAVQDCVGDAGGNSLEDAAFSALCGN----RMMADQALERALADGA 236 >gi|91762513|ref|ZP_01264478.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|91718315|gb|EAS84965.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 331 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 100/349 (28%), Positives = 164/349 (46%), Gaps = 50/349 (14%) Query: 19 LSHFVF-IFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 L ++ F +FYG ++GL E I N F++N H EI +I+ F+N + + Sbjct: 13 LDNYKFHLFYGENEGLKEENIKNLFEENYKDKIH------RYEEKEILDDINIFFNSVLT 66 Query: 77 TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 S F +K+I+I N +T+K + +EE+I KN + II+ S ++K +TLRK EK S Sbjct: 67 KSFFDNEKLIII-NRATDK-IKTIIEELIEKNPEDIKIILNSKNLEKKSTLRKFFEKEKS 124 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ + Y DN L +I SL K IS++ +L+ GDR NEL+K+ ++ Sbjct: 125 IVCVPFYEDNNQTLNSII--SLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENF 182 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------------ 242 L + L I+EII T Y+A L D LA Sbjct: 183 SL---------------NKKNLNIQEIIKLTNLADNYSASELVDHSLAKNTRKTVTILSE 227 Query: 243 ---SKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 S + ++ L K + L KI+ +I E +NI E+ I + I + ++ + + Sbjct: 228 NNYSDEDNIIIIRTLLAKLKRLVKIYDLIDEKNNI--EQAISACKPPIFWKDKPLVTQQV 285 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 R W K+ + + ++K + L +K L KNI+ +I + K NN Sbjct: 286 RSWKKDGLEQLIYKTNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331 >gi|16127981|ref|NP_422545.1| DNA polymerase III subunit delta [Caulobacter crescentus CB15] gi|13425525|gb|AAK25713.1| hypothetical protein CC_3751 [Caulobacter crescentus CB15] Length = 350 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/194 (20%), Positives = 97/194 (50%), Gaps = 11/194 (5%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +F+++ T ++ + YG D+G++ + N + + DPF L ++ + Sbjct: 10 ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDAD 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120 + +E+++ SL ++++ + LS++K D E + +++ + ++++ Sbjct: 66 PAKLEDELSAMSLMGGRRLVRL-RLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK I CY D L L ++L + S++ EA ++ ++ L + Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSRLPKE 184 Query: 181 RIASRNELQKLSSY 194 R +R E+++L+ Y Sbjct: 185 RGVARAEIERLALY 198 >gi|221236803|ref|YP_002519240.1| DNA polymerase III subunit delta [Caulobacter crescentus NA1000] gi|220965976|gb|ACL97332.1| DNA polymerase III, delta subunit [Caulobacter crescentus NA1000] Length = 350 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/194 (20%), Positives = 97/194 (50%), Gaps = 11/194 (5%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +F+++ T ++ + YG D+G++ + N + + DPF L ++ + Sbjct: 10 ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDAD 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120 + +E+++ SL ++++ + LS++K D E + +++ + ++++ Sbjct: 66 PAKLEDELSAMSLMGGRRLVRL-RLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK I CY D L L ++L + S++ EA ++ ++ L + Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALELFVSRLPKE 184 Query: 181 RIASRNELQKLSSY 194 R +R E+++L+ Y Sbjct: 185 RGVARAEIERLALY 198 >gi|167648983|ref|YP_001686646.1| DNA polymerase III subunit delta [Caulobacter sp. K31] gi|167351413|gb|ABZ74148.1| DNA polymerase III, delta subunit [Caulobacter sp. K31] Length = 350 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 87/176 (49%), Gaps = 7/176 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG D+G++ + +Q K + DPF L ++ +E+++ S+ Sbjct: 22 AVVIYGRDRGVVRDRADQLVKRLFERPDDPFDTAQLTESDLDAQAGKLEDELSALSMMGG 81 Query: 83 KKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNEIKKNNTLRKIAEKFTS 136 ++++ + L+ EK D E + +++ + +I++ + +++TLRK+AEK Sbjct: 82 RRLVRL-RLTGEKGGPDKQAAEALTRHVEGQLNPDAFFLIEAGALGRDSTLRKVAEKAAG 140 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 I CY D L L E++ + S++ EA + ++ L +R +R E+++L+ Sbjct: 141 AAVIPCYEDEAGDLARLTRETMAKDKVSLNGEALDLFVSRLPKERGVARAEIERLA 196 >gi|197106980|ref|YP_002132357.1| putative DNA polymerase III, delta subunit [Phenylobacterium zucineum HLK1] gi|196480400|gb|ACG79928.1| putative DNA polymerase III, delta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/174 (21%), Positives = 87/174 (50%), Gaps = 7/174 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D G++ + +Q DPF + +L +++ + E+ + SL ++ Sbjct: 24 LIYGRDLGVVRDRGHQLAAKTVPNPDDPFDVAILTEVDVADDPPRLEGELAAQSLMGGRR 83 Query: 85 IILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNEIKKNNTLRKIAEKFTSVL 138 ++ + LS+EK +D + E + ++ + +I++ + +++ LRK+ EK + Sbjct: 84 LVRL-RLSSEKPAVDKAVAEALERHAKGELNPDAFFLIEAGNLGRDSALRKVGEKQPACA 142 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 I CY D + L++E+L ++ +A + +A + +R +R E+++L+ Sbjct: 143 TIPCYEDEPGDVARLVKETLARDNVGLNADALALFVARMPKERGVARQEIERLA 196 >gi|304320512|ref|YP_003854155.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis HTCC2503] gi|303299414|gb|ADM09013.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis HTCC2503] Length = 351 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 14/257 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V +FYG D GL+ E + I +DPF+ + L+ +I+ ++ +E + S Sbjct: 22 VALFYGPDGGLVQERARRLSHYIVEDVNDPFNAISLSEGDIE-SVGQLADEAMALSFMGG 80 Query: 83 KKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++I + K V L I N +++I++ ++KK + LRK EK AI Sbjct: 81 ERLIRLRTPGEKAAKGVTHLLTRIEAGAAPNALVVIEAGDLKKTSALRKACEKSRFAAAI 140 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 CYP L + I L SI A L+ +G D +EL+KL Y L Sbjct: 141 GCYPQEGKDLAETIRTRLKQESLSIDDAALLRLVTLMGDDHGVLSSELEKLILYMGPQSL 200 Query: 201 ------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +TE + + + EI + T++G ++ L++ ++ +LL G Sbjct: 201 RAGTAEVTETDIAQALAQSTADATFEIADLTLRG---DSPTLSEALFRARGAGVSLL-GV 256 Query: 255 LQKFQ-LLEKIHIIKEC 270 L+ Q L ++ +KE Sbjct: 257 LRILQGRLARLMTVKEA 273 >gi|315497184|ref|YP_004085988.1| DNA polymerase iii, delta subunit [Asticcacaulis excentricus CB 48] gi|315415196|gb|ADU11837.1| DNA polymerase III, delta subunit [Asticcacaulis excentricus CB 48] Length = 350 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D+G + E + I DPF++ +L +I + + +E+ + SL ++ Sbjct: 24 LIYGKDRGQVLERGQALAQKIVPDIKDPFNVSLLTDTDIDADPARLEDELQAQSLMGGRR 83 Query: 85 IILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ + E + +K+V L+ + ++ + +I++ + ++ +RK+A+ ++ + Sbjct: 84 LVRLKFFSEKAALDKQVAAALKAHVAGDLNRDAFFLIEAGGLGGDSAVRKLADADKAIAS 143 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I+CY D ++ + E+L + +++ +A I A L +R +R E+++L CL Sbjct: 144 IACYEDETGDVVRMARETLAQNEVALTPDAMDIFAARLPKERGVARQEIERL---CL 197 >gi|296114816|ref|ZP_06833465.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC 23769] gi|295978630|gb|EFG85359.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC 23769] Length = 339 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 7/211 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GLI E Q + I+ DPF + +L + E + SL Sbjct: 20 VILLHGEDTGLIRERATQAAQVITPELDDPFRVAILG----RDAHDRMAEECAALSLVGG 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + ++E + + + ++I+++ ++ + LR + EK + AI+C Sbjct: 76 RRVVWVRE--ARDGLTGPVKECLAADT-DTLLIMEAPGLESRSKLRALLEKAPNCAAIAC 132 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YP+ L I + LL I +A DR A+R E++KL + + +T Sbjct: 133 YPEEGRVLEGSIRQMLLALGVEIDPDALSWFAERASPDRAATRAEVEKLFLFAGQGGRLT 192 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + V+ I D + +E+ A + G A Sbjct: 193 HEDVQACIGDAASVSLEDAAFAAMSGDRAGA 223 >gi|162148178|ref|YP_001602639.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus PAl 5] gi|209542817|ref|YP_002275046.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus PAl 5] gi|161786755|emb|CAP56338.1| putative DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209530494|gb|ACI50431.1| DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 337 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 9/297 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GLI E I+ DPF + VL+ + EI + SL Sbjct: 20 VILLHGDDSGLIRERARLAATAIAPNLDDPFRVAVLD----RDAADRLDEEIFALSLAGG 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + L + + + ++I+++ + LR +AE AI+C Sbjct: 76 RRVVWVRDGGDS---LTAPLKASLARPSDTLVIVEAPGLASRARLRALAEAQADCAAIAC 132 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 YP+ L I + L I +A LG +R A+R E++KL+ Y ++ Sbjct: 133 YPEEGRALEASIRQMLAEEDIRIDPDALSWFAGLLGPNRAATRGEVEKLALYAGRGGQLS 192 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 V+ I D + +E+ A G A + + LA A+ L L Sbjct: 193 LDDVRMCIGDAAGVSLEDAAFAATAGDRAGADIAIERALAEGTSPIAVARSLLSHLHRLR 252 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + I + S ++ + + + ++L +W + E + R+ L Sbjct: 253 RARIAMDGGQ-SRADAMRGLRPPVFFKRTDAFGQALSLWTAARLMEAAEQT-QRLEL 307 >gi|71083061|ref|YP_265780.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|71062174|gb|AAZ21177.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 331 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 159/343 (46%), Gaps = 49/343 (14%) Query: 24 FIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++FYG ++GL E I N F+KN H EI +I+ F+N I + S F Sbjct: 19 YLFYGDNEGLKEENIKNLFEKNYKDKIHR------YEEKEILDDINIFFNNIFNKSFFDN 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +K+I+I N +T+K + +EE++ K + II+ S ++K ++LRK+ EK S+ I Sbjct: 73 EKLIII-NRATDK-IKTIIEELMEKKPEDIQIILNSKNLEKKSSLRKLFEKEKSIACIPF 130 Query: 143 YPDNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 Y DN L +I SL K IS++ +L+ GDR NEL+K+ ++ L Sbjct: 131 YEDNNQTLNSII--SLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENFSL---- 184 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG------- 253 + L I+EII T Y+A L D LA + G Sbjct: 185 -----------NKKNLNIQEIIKLTNIADNYSASELVDHSLAKNTRKTVTILGENNYSDE 233 Query: 254 --------FLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L K + L KIH +++E +NI E+ I + I + ++ + +R W K+ Sbjct: 234 DNIIIIRTLLAKLKRLVKIHELVEEKNNI--EQAITACKPPIFWKDKPLVIQQIRSWKKD 291 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + ++K + L +K L KNI+ +I + K NN Sbjct: 292 GLEQLIYKTNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331 >gi|302381489|ref|YP_003817312.1| DNA polymerase III subunit delta [Brevundimonas subvibrioides ATCC 15264] gi|302192117|gb|ADK99688.1| DNA polymerase III, delta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 350 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/196 (19%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E +F+ + + + + +G D+ + E K I+ +DPF++ VL +I Sbjct: 8 EVDRFLARPDAGIRAA----VIHGKDRSGVAERAEILCKAITPDLNDPFNVTVLTDSDID 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC------NHIIIIKS 118 + + + + S+ ++++ + L +K +D + +K + +++I++ Sbjct: 64 GDEARLEEALTALSMIGGRRLVRV-RLGADKASIDKMLAAALKTHGEGGYNPDAMLVIEA 122 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + +++ LRK AE + + I+CY D + + E+L + ++ +A + +A L Sbjct: 123 GALGRDSVLRKAAEAGKASVGIACYEDEAGDIARMTREALAADKVGLTSDALAVFVARLP 182 Query: 179 GDRIASRNELQKLSSY 194 +R R E+++L+ Y Sbjct: 183 KERGLMRQEIERLALY 198 >gi|57238818|ref|YP_179954.1| hypothetical protein Erum0870 [Ehrlichia ruminantium str. Welgevonden] gi|58578747|ref|YP_196959.1| hypothetical protein ERWE_CDS_00830 [Ehrlichia ruminantium str. Welgevonden] gi|58616807|ref|YP_196006.1| hypothetical protein ERGA_CDS_00800 [Ehrlichia ruminantium str. Gardel] gi|57160897|emb|CAH57802.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58416419|emb|CAI27532.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] gi|58417373|emb|CAI26577.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 339 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 121/244 (49%), Gaps = 12/244 (4%) Query: 25 IFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + YG+D G I ++I+ + N+ F++ ++ I KN T + E+++ +F Sbjct: 22 LIYGNDYGKISMYRDKIISSIRSNVD------FTITNIDFPSINKNPGTLFVELSTVPMF 75 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +K++++ N EK + + L +I+ NI N+ +II + E+ ++TLR+ + +S ++I Sbjct: 76 CTRKLLILTN--GEKVLSNELRDILEHNIGNNYVIIIAGELPNDSTLRQYYDSSSSAVSI 133 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 CY D+ +L ++ + L + E Q L +L + A ++EL+KL Y Sbjct: 134 GCYKDDNNNLAFIVSDFLTENNVQFNNEILQYLCHSLSKNPHALQSELEKLILYIGNSKN 193 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T Q +++ + +++ + ++ I N ++ L +K L+ L+ F Sbjct: 194 LTIQSIQEGLLTELDPVSDDLYISIVERDIENFTKFSNILLKNKFTPILLIRVLLKYFLR 253 Query: 261 LEKI 264 LE I Sbjct: 254 LEYI 257 >gi|73666710|ref|YP_302726.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake] gi|72393851|gb|AAZ68128.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake] Length = 334 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 11/254 (4%) Query: 25 IFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG+D G I N +K+ I I + FS ++ + KN ST + E+ + S+F K Sbjct: 22 LIYGNDYGKI----NMYKEKIIKHINTNTEFSTSNIDYPTVNKNPSTLFIELTTISMFCK 77 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 K+I+I N EK + L+ I+ NI + +II S E+ +++LR+ + + +I C Sbjct: 78 NKLIIIAN--GEKSISQELKNILNNNIGRNYVIITSGELSIDSSLRQYYDNSLNAASIGC 135 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D+ +L +I + L + + Q L + L + A ELQKL Y + +T Sbjct: 136 YKDDNDNLAFIISDFLTQNKVHYNCTTLQYLCSVLSQNCNALEPELQKLMLYIGNNKNLT 195 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK-IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + +++ + T + I E + +I K + N ++ L +K AL+ ++ F L Sbjct: 196 TKDIQESLL-TEIDPISEDLCISIAEKNLENFTKFSNILLKNKFTPIALIRILIKYFLRL 254 Query: 262 EK-IHIIKECSNIS 274 E I ++K+ +I+ Sbjct: 255 EYLIRVVKDGESIN 268 >gi|329847391|ref|ZP_08262419.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19] gi|328842454|gb|EGF92023.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19] Length = 350 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 8/179 (4%) Query: 20 SHFVFIF-YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 SH + + YG D+ + E K I DPF++ ++ +I+ + + E+ S S Sbjct: 18 SHVLGVLIYGKDRSQVIERATVLAKRIVPDITDPFNVSLITDTDIENDPARLEGELQSLS 77 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNIC------NHIIIIKSNEIKKNNTLRKIAE 132 + ++++ ++ TEK LD ++K +II++ + + LR++A+ Sbjct: 78 MMGGRRLVRLK-FFTEKAALDKAVAAVVKQHAAGDYNREAFLIIEAGSLGGESALRRLAD 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++++I+CY D ++ + E+ S++ A I L +R + E+++L Sbjct: 137 ADKALVSIACYEDETGDIIRMAREAFAANGVSLTTGAMDIFAQRLPKERGIAHQEIERL 195 >gi|254418443|ref|ZP_05032167.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3] gi|196184620|gb|EDX79596.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3] Length = 350 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 83/175 (47%), Gaps = 9/175 (5%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + +G D+ + E + I+ +DPF++ VL +I + S + + SL ++ Sbjct: 24 VIHGKDRSGVAERAEVLCRAITPDLNDPFNVTVLTDSDIDSDESKLEEALTAMSLMGGRR 83 Query: 85 IILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++ I LS K +D +K N + +++++++++ + + LRK AEK Sbjct: 84 LVRI-RLSALKPGVDKAVAAAVKIHAEGGYN-PDAMLVVEADQLGRESALRKTAEKEAGA 141 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I CY D + + E+L + ++ +A + L +R R E+++L+ Sbjct: 142 VGIVCYEDETGDIARMTREALAADKVGLTADALDRFVGRLPRERGLMRQEIERLA 196 >gi|154251731|ref|YP_001412555.1| DNA polymerase III subunit delta [Parvibaculum lavamentivorans DS-1] gi|154155681|gb|ABS62898.1| DNA polymerase III, delta subunit [Parvibaculum lavamentivorans DS-1] Length = 347 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 70/351 (19%), Positives = 153/351 (43%), Gaps = 28/351 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E+ +F K + + YG D GL+ E I + + DPF + L+ +++ Sbjct: 7 EADRFATKPDPKVV----AVLAYGPDAGLVRERIKMLARTVVDDLADPFRVAELSDTDLK 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 ++ + +E + ++ ++++ + + + E + + ++++++ E+ Sbjct: 63 QDPARLSDEAAAIAMLGGRRVVRVRGAADATAKI--FESFLENPAGDALVLVEAGELGPR 120 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 ++LR + E + AI+CY D+ L ++I L A + L +LG DR + Sbjct: 121 SSLRLLFEGAANAAAIACYADDAGVLENVIRTRLANEGLVPEPAALEYLRDHLGSDRGVT 180 Query: 185 RNELQKLSSYC-----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +NEL+KL Y E +T + + D ++++I+A + G + + Sbjct: 181 QNELEKLILYAGPGKQGEKRAVTLDDARASVGDNAGTSLDDVIDAAMGGDLDGLDVALAR 240 Query: 240 FLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A++ + A+L+ + QL I+ S++ E I+ + ++N +Q + Sbjct: 241 ARAAETNAIAILNALSRHLMQLHLATARIETGSDV--EGAIRSFRPPVHFSRKNAVQRQM 298 Query: 299 RIWNKNLVRETLHKIDHRIHLA-------RKKKYLEKNIIFQTILYIAQTA 342 ++WN+ ++D + LA + + I QT+L IAQ A Sbjct: 299 KLWNR-------KRLDRALALALEAEGQCKSSGQPDVAICGQTLLRIAQGA 342 >gi|296533439|ref|ZP_06896022.1| DNA-directed DNA polymerase III delta subunit [Roseomonas cervicalis ATCC 49957] gi|296266219|gb|EFH12261.1| DNA-directed DNA polymerase III delta subunit [Roseomonas cervicalis ATCC 49957] Length = 345 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 16/289 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + +G D GLI E ++ + +DPF L L E E+ + ++ Sbjct: 21 AVLLHGDDAGLIQERAEALVASV-VGGNDPFRLAELP-REAAAKPGALAGEMAALAMTGG 78 Query: 83 KKIILIENLSTEKKVLDCLEEII---IKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + + D L + + +++++ E+ LR E Sbjct: 79 RRLVRVRDAT------DALANAVKEALAGPGEALLVLEGGELTARAKLRTQLEAARDAAV 132 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+CY + L I L +I A L + LG DR+ R E++KL+ Y Sbjct: 133 IACYRERGAELAASIGRMLQEQGVAIDPPALDWLSSRLGEDRMLLRREVEKLALYAGAGG 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 ++E+ V + L ++E + A G I A + A A+L L+ Q Sbjct: 193 RLSEEDVLACAGEGSTLDLDEALIAATAGDIPLADRALEAAFAEGASPIAVLRAALRHVQ 252 Query: 260 LLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++H+ + ++ + + + +LR+W+ L+ Sbjct: 253 ---RLHLASLAVARGQPASAAMEGLRPPVFFRAKPGFERALRLWSPALL 298 >gi|329891185|ref|ZP_08269528.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC 11568] gi|328846486|gb|EGF96050.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC 11568] Length = 350 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 7/176 (3%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + +G D+ + E + I+ +DPF++ +L +I + + + S+ ++ Sbjct: 24 VIHGKDRSGVTERALTLCRTITPDLNDPFNVTLLTEADIDGDAVRLEEALTALSMIGGRR 83 Query: 85 IILIENLSTEKKVLDCLEEIIIKNI------CNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++ I +S K +D + + +++I++ + + + LRK AEK + Sbjct: 84 LVRI-RMSDGKAGVDKAVAAALTAHAEGAYNPDAMLVIEAGALGRESALRKAAEKAQGAV 142 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 AI+CY D + + E+L + +S +A +A L +R R E+++L Y Sbjct: 143 AIACYEDEVGDVARMTREALGADKVGLSSDALDRFVARLPRERGLMRQEIERLILY 198 >gi|218513713|ref|ZP_03510553.1| DNA polymerase III subunit delta [Rhizobium etli 8C-3] Length = 71 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 7/69 (10%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKN 66 L+ ++QK+ Sbjct: 57 LDIADLQKD 65 >gi|88657564|ref|YP_506954.1| hypothetical protein ECH_0126 [Ehrlichia chaffeensis str. Arkansas] gi|88599021|gb|ABD44490.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 334 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 9/249 (3%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNE 73 NL L++ + I YG+D G I+ +KK I + + F++ ++ + KN ST + E Sbjct: 14 NLQLTNNILI-YGNDYG----KISMYKKKIINHVNTNSEFAISNIDFSTVNKNPSTLFIE 68 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + S+F + K+I++ N EK + L+ ++ NI N+ III S E+ ++TLR+ + Sbjct: 69 LTTISMFCQNKLIILAN--GEKSISQELKHVLSNNIGNNYIIITSGELSPDSTLRQYYDN 126 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + +I CY D+ +L +I + L + + Q L L + A + EL+KL Sbjct: 127 SRNAASIGCYKDDNDNLSFIISDFLTKNKVQYNATTLQYLHNVLSQNCNALQPELEKLIL 186 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y + +T Q++++ + E++ + + + N +D L +K AL+ Sbjct: 187 YIGNNKNLTIQNIQESLLTEIDPISEDLCVSVAEKNLENFTKFSDVLLKNKFTPIALIRI 246 Query: 254 FLQKFQLLE 262 ++ F LE Sbjct: 247 LIKYFSRLE 255 >gi|148284276|ref|YP_001248366.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str. Boryong] gi|146739715|emb|CAM79535.1| DNA polymerase III, delta subunit [Orientia tsutsugamushi str. Boryong] Length = 339 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 19/188 (10%) Query: 27 YGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 YG+D GLI E+ F N+ I +D L + + I +NS +LFS+ Sbjct: 26 YGNDHGLIDYRCQEITKLFNANLRI--YDYRELTEADFIFI----------LNSNNLFSQ 73 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++I+ I N T + L++ + N N +I++ NE ++T R+ E + A+ C Sbjct: 74 REIVKIYN--TPGNINAALKKALTFNNQNFLIVL-GNEFSASSTTRQWFETQKYLAALGC 130 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y +N + L+ + + K+I+ EA GD+ NE+ KL YC + I+ Sbjct: 131 YTENSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCDTIS 190 Query: 203 EQHVKDII 210 ++ V I Sbjct: 191 KKEVNKCI 198 >gi|189183151|ref|YP_001936936.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str. Ikeda] gi|189179922|dbj|BAG39702.1| hypothetical protein OTT_0244 [Orientia tsutsugamushi str. Ikeda] Length = 339 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 27 YGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 YG+D GLI E+I F N+ I +D L + + I +NS +LFS+ Sbjct: 26 YGNDHGLIDYRCQEIIKLFNANLRI--YDYRELTEADFIFI----------LNSNNLFSQ 73 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++I+ I N T + L++ + N N +I++ S E ++T R+ E + A+ C Sbjct: 74 REIVKIYN--TPGNINAALKKALTFNNKNFLIMLGS-EFSASSTTRQWFETQKYLAALGC 130 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y ++ + L+ + + K+I+ EA GD+ NE+ KL YC + I+ Sbjct: 131 YTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCDTIS 190 Query: 203 EQHVKDII 210 +Q V I Sbjct: 191 KQEVNKCI 198 >gi|51473388|ref|YP_067145.1| DNA polymerase III subunit delta [Rickettsia typhi str. Wilmington] gi|51459700|gb|AAU03663.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 321 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81 + YG DKG I ++ + KN+++ +L+++E + NI +F +NS + F Sbjct: 22 ALLLYGPDKGYIEKICTRLVKNLNM---------LLSSIEYEDLNILSFEILLNSHNFFG 72 Query: 82 KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +K++I I ++ LD L+ I+ + N + I ++ + +++K E + A+ Sbjct: 73 QKELIKIRSIGNS---LDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAAV 128 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 +CY D++ + +I L K ISKEA L +L GD +E+ KL + + Sbjct: 129 ACYHDDEAKIERIILAKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIYFVHDVHE 188 Query: 201 ITEQHVKDII 210 IT HV ++I Sbjct: 189 ITLNHVLEVI 198 >gi|254373632|ref|ZP_04989116.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548] gi|151571354|gb|EDN37008.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548] Length = 325 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|89257146|ref|YP_514508.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica LVS] gi|115315485|ref|YP_764208.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica OSU18] gi|156503371|ref|YP_001429436.1| DNA polymerase III, subunit delta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011053|ref|ZP_02275984.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254368371|ref|ZP_04984389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica 257] gi|290954108|ref|ZP_06558729.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312493|ref|ZP_06803261.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica URFT1] gi|89144977|emb|CAJ80337.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica LVS] gi|115130384|gb|ABI83571.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134254179|gb|EBA53273.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica 257] gi|156253974|gb|ABU62480.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 325 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|187932239|ref|YP_001892224.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187713148|gb|ACD31445.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 325 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLSL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|328676247|gb|AEB27117.1| DNA polymerase III delta subunit [Francisella cf. novicida Fx1] Length = 325 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S K+N T Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120 Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + + K + DN I+++D + L + S++KEA Q+L G+ IA++ Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|254368393|ref|ZP_04984410.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|157121287|gb|EDO65488.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] Length = 325 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|162447751|ref|YP_001620883.1| DNA polymerase III subunit delta [Acholeplasma laidlawii PG-8A] gi|161985858|gb|ABX81507.1| DNA polymerase III, delta subunit [Acholeplasma laidlawii PG-8A] Length = 315 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/264 (21%), Positives = 117/264 (44%), Gaps = 17/264 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G LI E I ++ + D F++V L+ALE + I E+ + S FS Sbjct: 4 TYLLVGQSAFLINEQIKTYQDKFKL---DQFNIVKLDALETE--IEVINQELQTVSFFSD 58 Query: 83 KKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 K+++IE+L + KVL + + + ++I+ E+ K++ L EK+T + Sbjct: 59 LKMVVIEHLDGLTRYDDKVLSTFYKYLESPSSDIVLILTITELPKDHNLGSYLEKYTFIE 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I L+ I ES I ++ Q+++ D + E+ K+ Y ++ Sbjct: 119 TIQSLEGET--LISYIRESFHKEGYQIEDKSIQLIIERTQNDLFSIHQEISKIKMYAYDE 176 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + V ++ I A ++G I + + + D + +KMP+ + + Sbjct: 177 KIVFVEDVDLLVTRNLEDNIFSFSTAYLKGNIKSYMQIYDDLVTNKMPTITIFN------ 230 Query: 259 QLLEKIHIIKECSNISFEKIIQKT 282 L +H+I + ++ + + QKT Sbjct: 231 HLFNTMHLIMQTKDLMEQGLNQKT 254 >gi|56707362|ref|YP_169258.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110669832|ref|YP_666389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis FSC198] gi|224456430|ref|ZP_03664903.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370934|ref|ZP_04986939.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874196|ref|ZP_05246906.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|56603854|emb|CAG44830.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320165|emb|CAL08213.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151569177|gb|EDN34831.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840195|gb|EET18631.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|282158494|gb|ADA77885.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis NE061598] Length = 325 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|134302695|ref|YP_001122663.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134050472|gb|ABO47543.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 325 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + K + DN I+++D + L + S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLS 192 + L+ LS Sbjct: 177 KQILKLLS 184 >gi|160893074|ref|ZP_02073862.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50] gi|156865157|gb|EDO58588.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50] Length = 337 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/253 (22%), Positives = 113/253 (44%), Gaps = 23/253 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNI--SITYHDP------FSLVVLNALEIQKNISTFWNEI 74 V++ YG + L+NQ++ + ++T D F+ + +EI T Sbjct: 28 VYLLYGDET----YLVNQYRDKLLSAVTDRDDNMNFAKFAGEKTDPMEIIGFCETM---- 79 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 F+ ++++L E KK + E I + +I+ +E+ K N L K +K Sbjct: 80 ---PFFADRRVVLAEGTGLFKKSCEEFAERIKELPDTSLILFVESEVDKRNKLYKTVDKL 136 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSS 193 L C+ + + + + G+ K I+ +A + L+ + G D + +NE+ KL S Sbjct: 137 GEAL---CFETPNEKTLAVWVKGMFKGEGKQITDDAIRSLIEHTGSDMNSIKNEIDKLIS 193 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y ++ +T V+++ +I E+I+A + + AI L L ++ P+ +L Sbjct: 194 YTVDREAVTASDVENLCVGNSEGHIFEMIDAISRKQQDRAIHLYHELLENREPAMRILFL 253 Query: 254 FLQKFQLLEKIHI 266 +++ LL K + Sbjct: 254 IARQYDLLLKTKM 266 >gi|294055838|ref|YP_003549496.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM 45221] gi|293615171|gb|ADE55326.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM 45221] Length = 364 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 22/208 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINS 76 F FI G D L+ E ++ + + D S V++ E+++ + F + + + Sbjct: 6 FTFI-CGDDDYLVSERGKEWFRAQTKDLMDDLSKEVIDGRAGNYAEVEEALGRFRSAVQT 64 Query: 77 TSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHI------IIIKSNEIK 122 S+F ++K++ ++++ + LD L+++ K I ++I + + Sbjct: 65 LSMFGERKVVWLKDVNFLADSVTGRAQGTLDLLDDL--KGFLGGIDPSGVGVLITAQPVD 122 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K K +K AI+ D+ L LIEE IS++A Q+L+ + G+ Sbjct: 123 KRRAFFKWIQKTAEFTAIAGGKDSAQALAALIEEQCKAAGAQISRDAVQLLIGKVNGNTR 182 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDII 210 E +KL ++ E I E+ V D++ Sbjct: 183 LIVEECRKLCTFVGEGGSIGERLVVDLV 210 >gi|118496787|ref|YP_897837.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida U112] gi|194324532|ref|ZP_03058304.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida FTE] gi|118422693|gb|ABK89083.1| DNA polymerase III, delta subunit [Francisella novicida U112] gi|194321367|gb|EDX18853.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida FTE] Length = 325 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD L Q NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHD---------LSDQ-NIDI 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S K+N T Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120 Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + + K + DN I+++D + L + S++KEA Q+L G+ IA++ Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|94496573|ref|ZP_01303149.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58] gi|94423933|gb|EAT08958.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58] Length = 346 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 63/346 (18%), Positives = 133/346 (38%), Gaps = 53/346 (15%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ YG D+ L + ++ + + L+A ++++ + +E + S+F K Sbjct: 26 FLLYGPDEAGSQALAKRLERAMGPQAE----RIDLDAPTLREDPARLSDEAAAFSMFGDK 81 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA-ISC 142 + I + + + L L ++ + +I + +K + L K+A +LA IS Sbjct: 82 RWIRVNGIGDD--CLPALNALLDAEAAGNPVIAVAGALKPTSKLAKLALDHKGILACISY 139 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL--------GGDRIASRNELQKLSSY 194 PD + E + IG I+++ L ++L GGDR E++KL Y Sbjct: 140 QPDGREA------EQIAIG---IARDGGLRLSSDLARRIVDLSGGDRALMAGEIEKLILY 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINA-------TIQGKIYNAIMLADF-------- 239 D D E ++A T G + NA++ D Sbjct: 191 L------------DAAPDRPAEATGEALDALSADNPETEVGPLVNAVLGGDLRAMHRELT 238 Query: 240 -FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + A++ L + LL I + S E + + + + ++ ++ + Sbjct: 239 ALAQAGAAMAAVIRPLLTRAMLLATIRDAFDASG-RLEAAVDQAGRAVFWKEKGLVTRQV 297 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R+W+ + + ++ +R + L ++ +L IA+ A + Sbjct: 298 RLWDAPGIARVIQRLLAAERSSRGGRGLGDLMVRHELLAIARQAAR 343 >gi|157803359|ref|YP_001491908.1| DNA polymerase III subunit delta [Rickettsia canadensis str. McKiel] gi|157784622|gb|ABV73123.1| hypothetical protein A1E_00875 [Rickettsia canadensis str. McKiel] Length = 323 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 13/170 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++E + NI++ +NS + F Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNM---------LQTSIEYTELNIASLEILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I + S + L+ I+ ++ N + I E+ +++ RK E + A + Sbjct: 73 QKELIKVR--SVGNSIDQNLKIILSRDYINFPVFI-GEEMTSSSSFRKFFETEEYLAATA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 CY D+++ + +I + + K ISKEA L A+L GD NE+ KL Sbjct: 130 CYHDDEVKIERIILDKVGKTNKIISKEANAYLKAHLKGDHNLVCNEINKL 179 >gi|254372151|ref|ZP_04987643.1| DNA polymerase III [Francisella tularensis subsp. novicida GA99-3549] gi|151569881|gb|EDN35535.1| DNA polymerase III [Francisella novicida GA99-3549] Length = 325 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ N FK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S K+N T Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120 Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + + K + DN I+++D + L + S++KEA Q+L G+ IA++ Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|328675340|gb|AEB28015.1| DNA polymerase III delta subunit [Francisella cf. novicida 3523] Length = 325 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S K+N T Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQVLVDKLINDDDNVYLLVFSGMKKQNTTAK 120 Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + + K + DN I++++ + L + S++KEA Q+L G+ IA++ Sbjct: 121 WFQSLEHKAIHIRIFQPSLDNSINIINYETQQLGL---SLTKEATQLLALKTEGNLIATK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|91205921|ref|YP_538276.1| DNA polymerase III subunit delta [Rickettsia bellii RML369-C] gi|157826718|ref|YP_001495782.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389] gi|91069465|gb|ABE05187.1| DNA polymerase III delta subunit [Rickettsia bellii RML369-C] gi|157802022|gb|ABV78745.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389] Length = 330 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K SI Y D NIS+ +NS Sbjct: 22 ALLLYGPDKGYIDKICRHLVKKFNMLQTSIEYSDL-------------NISSLEILLNSP 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F++K++I I+ + + L+ I+ N N + I +I +++ RK E S+ Sbjct: 69 NFFNQKELIRIKGVGNS--IDKNLKVILNDNYINFPVFI-GEDITSSSSFRKFFETEESL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 +++CY D++ + ++ E L K I +EA L +L GD NE+ KL + + Sbjct: 126 ASLACYHDDEAKIEKIVLEKLAKCNKIIDREALIYLKNHLKGDHELVSNEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 +T +K+++ Sbjct: 186 KQEVTLNDIKEVL 198 >gi|325661908|ref|ZP_08150528.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325471760|gb|EGC74978.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 326 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 11/240 (4%) Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + FS++++I++EN K L + + + + E+ K L K + Sbjct: 65 ETMPFFSERRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAK 124 Query: 135 TSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++ + ++ + ++ +++ K IS+ Q LLA G D + EL+KL Sbjct: 125 GRIVELGRQDEHTLVRWILGMVKRE----GKQISERTVQFLLAKTGDDMENLQRELEKLF 180 Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y LE IT + V++ IC TH+ I E++ A + K A+ L LA K P +L Sbjct: 181 CYTLEKDAITVEDVEE-ICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRIL 239 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +++F+LL ++ + + S ++I +KT + + + Q +++ K +RE L Sbjct: 240 FLLVRQFRLLLEVKELDQ-SGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE 296 >gi|331085701|ref|ZP_08334784.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406624|gb|EGG86129.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 326 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 8/190 (4%) Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + FS++++I++EN K L + + + + E+ K L K + Sbjct: 65 ETMPFFSERRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAK 124 Query: 135 TSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++ + ++ + ++ +++ K IS+ Q LLA G D + EL+KL Sbjct: 125 GRIVELGRQDEHTLVRWILGMVKRE----GKQISERTVQFLLAKTGDDMENLQRELEKLF 180 Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y LE IT + V++ IC TH+ I E++ A + K A+ L LA K P +L Sbjct: 181 CYTLEKDAITVEDVEE-ICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRIL 239 Query: 252 HGFLQKFQLL 261 +++F+LL Sbjct: 240 FLLVRQFRLL 249 >gi|282889594|ref|ZP_06298135.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500517|gb|EFB42795.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 341 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 7/212 (3%) Query: 52 PFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNIC 110 P++ V A + I E+N+ +F+ ++++LI++L KK + LEE + Sbjct: 54 PYAFVQKEAESL--PIQELKEELNTGDMFASRRVVLIQHLDALKKPQREYLEEYCLHPSA 111 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISK 167 ++ + + L K EK + + + K + +I ++ + G KS+ Sbjct: 112 QLCLVCSAATFNRTTQLYKKMEKAGVIFDVEEKKPWELEKYLIEQVIADARVEG-KSMDS 170 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 A Q+L+ +G +R EL+KL Y IT Q ++ I + I ++ +A Q Sbjct: 171 SAAQLLVKQVGTNRSMLHQELEKLCCYVGNRTSITTQDIQAICANVPSETIWQLGDAIFQ 230 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I + I + L P LL +FQ Sbjct: 231 RDIKSVIRIGLALLDEGTPFLILLRQIRSQFQ 262 >gi|208780598|ref|ZP_03247937.1| DNA polymerase III, delta subunit [Francisella novicida FTG] gi|208743573|gb|EDZ89878.1| DNA polymerase III, delta subunit [Francisella novicida FTG] Length = 325 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ N FK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNYEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126 +NE++S SLFS K I + +KK+ L + +I + N +++ S K+N T Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120 Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + + K + DN I+++D + L + S++KEA Q+L G+ IA++ Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|157828118|ref|YP_001494360.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932819|ref|YP_001649608.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. Iowa] gi|157800599|gb|ABV75852.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907906|gb|ABY72202.1| DNA polymerase III, delta subunit [Rickettsia rickettsii str. Iowa] Length = 324 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I E+ + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEELTSSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKNNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT V ++I Sbjct: 186 AREITLNDVLEVI 198 >gi|238917138|ref|YP_002930655.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750] gi|238872498|gb|ACR72208.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750] Length = 324 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 20/243 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNIS------ITYHDPFSLVVLNALEIQKNISTFWNEINS 76 V++ YG ++ L + ++ K I+ +Y+D + V + +++ + Sbjct: 16 VYLLYGEEEYLKKQYRDRLKNAIAGDDTMNYSYYDSDNASVKDIIDV----------CET 65 Query: 77 TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFT 135 F++K+++++EN K D L + I K+I ++++I+ ++ K N + K + Sbjct: 66 LPFFAQKRLVIMENTGFLKSSNDELADYI-KHIPDYLVIVMVEKDVDKRNKVYKAVDSVG 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 V + P L I L IS+EA ++L G R E++KL SYC Sbjct: 125 YVCEMK--PQTTATLEKWIAGLLAKDNLKISREACDLILDKTGAGMDYIRQEIEKLVSYC 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++T + V+ + +I ++I+A K A+ L L K P +L+ + Sbjct: 183 QGRNVVTAEDVEKVCATQTTSHIFDMISAIANKKQQQALDLYYDLLELKEPPMRILYLIV 242 Query: 256 QKF 258 ++F Sbjct: 243 RQF 245 >gi|238650454|ref|YP_002916306.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic] gi|238624552|gb|ACR47258.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic] Length = 324 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I E+ + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT V ++I Sbjct: 186 AREITLNDVLEVI 198 >gi|157825377|ref|YP_001493097.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford] gi|157799335|gb|ABV74589.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford] Length = 326 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNIS-----ITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K+++ I Y D NIS+ +NS Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNMLQTCIEYAD-------------LNISSVEILLNSP 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I ++ + + L+ I+ + N + I EI + ++RK E + Sbjct: 69 NFFGQKELIKIRSIGNS--LDNNLKTILSSDYINFPVFI-GEEITASGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 A++CY D++ + +I + + K ISKEA L A+L GD +E+ KL Sbjct: 126 AAVACYHDDEAKIERIILDKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKL 179 >gi|255320936|ref|ZP_05362110.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SK82] gi|262380211|ref|ZP_06073366.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SH164] gi|255302105|gb|EET81348.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SK82] gi|262298405|gb|EEY86319.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SH164] Length = 331 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 7/197 (3%) Query: 72 NEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLR 128 N +NS SLFS+ + + N+ + L L+ I N N ++++ K + + Sbjct: 63 NALNSLSLFSQHLAVEVHGNIKPDAGALKQLKNYIQHNESNLLLVVMPKQDSSSLKSAFF 122 Query: 129 KIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 ++ E V+ ++ YP + ++ + E L I + +EA Q L+ + + +A++N Sbjct: 123 QVVEANGVVVPLVANYPKERQQILSIEAEKLGI---QLDQEAWQWLMQHHEHNLLAAKNS 179 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L ++S E LI +H+ + D ++ +A + G + +I + + LAS P Sbjct: 180 LMRVSDTFPEQRLILTEHLYACLQDQSRYSTYDLSDALLAGNLAQSIRIFQYLLASGEPM 239 Query: 248 HALLHGFLQKFQLLEKI 264 +L ++ +LL ++ Sbjct: 240 SLILWTISREMRLLMQL 256 >gi|260590116|ref|ZP_05856029.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583] gi|331084373|ref|ZP_08333477.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|260539628|gb|EEX20197.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583] gi|330401637|gb|EGG81218.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 326 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 15/233 (6%) Query: 76 STSLFSKKKIILIENLSTEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAE 132 + F+ +++I +E+ K L E + + IC ++ N++ K N + K + Sbjct: 66 TMPFFADRRVIFLEDTGFFKNQCGDLPEYMAELPEYIC---MVFIENDVDKRNRMYKAVK 122 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K+ + N I M + + K I+++ ++ L+ G D EL+KL Sbjct: 123 KYGRAVEFGVQDSNTI--MRWVLGMMKREGKKITQKDMELFLSKTGTDMGNIERELEKLL 180 Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y ++ +IT Q +++ +C T + +I ++I A + A+ L LA K P +L Sbjct: 181 CYTMDREIITAQDIEN-VCTTQITNHIFDMIRAVTEKNQKKALDLYYELLALKEPPMRIL 239 Query: 252 HGFLQKFQLLEKIHIIKEC----SNISFEKIIQK-TEKNIIPMKRNILQESLR 299 ++F L+ ++ + +C S I+ + IQ KN + R E LR Sbjct: 240 FLLARQFNLIMQVKELSKCGYDQSQIAKKAGIQPFVVKNYLTYARKYSTEELR 292 >gi|239948156|ref|ZP_04699909.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922432|gb|EER22456.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 324 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYVDL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I EI + + +K E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 + IT V ++I Sbjct: 186 EREITLNDVLEVI 198 >gi|34580809|ref|ZP_00142289.1| hypothetical protein [Rickettsia sibirica 246] gi|28262194|gb|EAA25698.1| unknown [Rickettsia sibirica 246] Length = 324 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ +++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I E+ + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT +V ++I Sbjct: 186 AREITLNNVLEVI 198 >gi|157964254|ref|YP_001499078.1| DNA polymerase III subunit delta [Rickettsia massiliae MTU5] gi|157844030|gb|ABV84531.1| DNA polymerase III, delta subunit [Rickettsia massiliae MTU5] Length = 324 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ K++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I E+ + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEMISSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT V ++I Sbjct: 186 AREITLNDVLEVI 198 >gi|330813397|ref|YP_004357636.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. IMCC9063] gi|327486492|gb|AEA80897.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. IMCC9063] Length = 337 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 158/344 (45%), Gaps = 47/344 (13%) Query: 25 IFYGSDKGLIFELIN------QFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG + LI E+ N + KN++I Y + + L +N F IN+ Sbjct: 20 LLYGENLSLISEIENIITAEAKTTKNLTIKKYQEEYLL---------QNKDIFDQLINAE 70 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 SLF +++++I + K+++ +E ++ II + S + K + LR +AE T+ Sbjct: 71 SLFGDQEMVVIS--KSTDKIIELYDEKNAQDNDKQIIFL-SGPLTKKSKLRNLAETSTNF 127 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I+CY D L ++ + L + S+S+E I S E+ L+ + Sbjct: 128 TCIACYNDTPEQLQSILFQKLKDNKISVSREF------------INSIFEINSLNRQDIN 175 Query: 198 DIL-----------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 D + ITE+++K I + EIIN + G N + + Sbjct: 176 DAVSKVQLIQNTSKITEENLKTIFHSSENSNNFEIINFCLLGDKKNINKVLSNIYEQGIN 235 Query: 247 SHALLHGFLQKFQLLEKIHIIK-ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + +L K+++ + I I++ + ++ ++++ + I ++++++E LR W+K+ Sbjct: 236 FNEILAAL--KYKVKKLIDILESDIADKDPNQLVESFKPPIFWKEKSMVKEQLRRWDKSE 293 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNNNF 348 +++ L +I + I + KK Y NII Q I+ + +C +N + Sbjct: 294 LKQ-LMEIVYDIEVECKKNYDVSNIILQQFIVSTSNKSCLDNRY 336 >gi|317495075|ref|ZP_07953447.1| DNA polymerase III [Gemella moribillum M424] gi|316914847|gb|EFV36321.1| DNA polymerase III [Gemella moribillum M424] Length = 326 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 22/208 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYH---DPFSLVVLNALEIQKNISTFWNEINSTSL 79 V++ YG + FE +N ++K I+ Y D F+ V +N + + T E S+ L Sbjct: 4 VYVIYGEN----FEAVNDYEKEITRNYVKEVDEFNRVKINMND--HTLETLVYECRSSGL 57 Query: 80 FSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 F +K+++ EN L+ KK+ +D L + + +NI + +I+I N +K ++ +KI Sbjct: 58 FGNEKVVVAENCNFLLAKPKKLKVEHNVDVLTKYL-ENINDEVILILKNS-EKIDSRKKI 115 Query: 131 AEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 ++ + + + + K H L+D I + + ISK Q L+ D + EL+ Sbjct: 116 VKQLKEIGEVKEFSNFKEHQLIDYIVKQVGELGLEISKADAQFLVDYTQLDLANIKKELE 175 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLY 217 KL YC E I+++ + +++C + Y Sbjct: 176 KLVLYCGEIGRISKKDI-ELLCTRSLDY 202 >gi|190570628|ref|YP_001974986.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019121|ref|ZP_03334928.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356900|emb|CAQ54278.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995230|gb|EEB55871.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 339 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + +GSD + + + N+ + +S+ V++ + K+ ++E+ + S+F+KK+ Sbjct: 22 LIHGSDNSKVDIFVQEIIANL-----NEYSVQVMDFAVVNKSPGLLFSELANISMFTKKR 76 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 ++ + N+S + L I+ NI +H I++ +N++ ++T + E I+CY Sbjct: 77 LVKLINVSGS--ISKELRNILDHNIGDHYIVMIANDLPYSSTTKSYMESSKIFGVITCYK 134 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 D+ +L D+I L + E L + ++ +EL+KL Y Sbjct: 135 DSGSNLCDIISSYLKQNDIECTSEIIYHLQSYFNHSKLPIYSELEKLVLY 184 >gi|262277796|ref|ZP_06055589.1| putative DNA-directed DNA polymerase III [alpha proteobacterium HIMB114] gi|262224899|gb|EEY75358.1| putative DNA-directed DNA polymerase III [alpha proteobacterium HIMB114] Length = 334 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 17/302 (5%) Query: 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 LF + + + YG + L E++++ + I + F + E+ K+I N +N Sbjct: 13 LFSDYKINLIYGENFHLKTEILSKLTQ---IFKENEFKTKFIKEDELLKDIEILDNYLNQ 69 Query: 77 TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 SLF +K+I++I+ S K+LD I I +I++ N KK+ +LR AEK Sbjct: 70 DSLFGEKEILIIQEASD--KLLDY---INFSEIDKKLILVTDNLTKKS-SLRNKAEKEKI 123 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+CY D++ L L+ L + EA L +R + L+KL Sbjct: 124 ISCIACYEDDEKTLQSLLRNGLTKLDIKVPYEAIDQLFNINKLNRNDINSGLEKL-ELIT 182 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQG--KIYNAIMLADFFLASKMPSHALLHGF 254 +D + + + T EI NA + G K N I L+ F+ S + L G Sbjct: 183 KDKKLDSESFSSLFNTTSSFDAFEISNALLSGDKKALNKI-LSSFYHFSINFNEVL--GP 239 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLRIWNKNLVRETLHKI 313 L K+++ + I I + N + ++ T K I K +NI+Q L WNKN + L KI Sbjct: 240 L-KYKINKLIDIYEYNENETKITVLVDTYKPPIFWKEKNIIQTQLSKWNKNELDTLLDKI 298 Query: 314 DH 315 + Sbjct: 299 NE 300 >gi|302671159|ref|YP_003831119.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus B316] gi|302395632|gb|ADL34537.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus B316] Length = 336 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 2/194 (1%) Query: 76 STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 + S K++IL+EN K L E + I E+ K + K K Sbjct: 77 TMPFLSDKRVILVENSGFFKSGCAELAEYLKNPSETTFFIFAEKEVDKRKDIYKTVSKIG 136 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I C ++ L I + K IS A L+ +G D EL+KL YC Sbjct: 137 --FEICCDEQDERMLSSWIASKVKSEDKIISPRALSFLIDRVGTDMSNISTELEKLICYC 194 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 L+ ITE+ ++ + + I + +A ++ AI L LA K P +L Sbjct: 195 LDRSEITEEDIEAVCANWLTNRIFAMTDAIVEKNQKRAIDLYYDLLALKEPPAKILALIT 254 Query: 256 QKFQLLEKIHIIKE 269 ++F L+ ++ + E Sbjct: 255 RQFNLMLQVKEMNE 268 >gi|296133955|ref|YP_003641202.1| DNA polymerase III, delta subunit [Thermincola sp. JR] gi|296032533|gb|ADG83301.1| DNA polymerase III, delta subunit [Thermincola potens JR] Length = 346 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 21/254 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSLF 80 V++F+G + L+ E++ +FK + F++ V+ KN+S + Sbjct: 18 VYLFWGEETFLLEEVLAKFKYQLIPPDVMDFNMDVVEG----KNVSPEDIVRLATTLPFM 73 Query: 81 SKKKIILIEN---LSTEKKVLD------CLEEIII----KNICNHIIIIKSNEIKKNNTL 127 S K++++IEN +KK + EE++I + + +I S+ + + L Sbjct: 74 SDKRVVIIENADLFKAQKKTGEKSDQAKSQEELLIEYCKQPLDTTCLIFTSDSVDRKKKL 133 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K ++ + +A+ P I L D +E + K+I EA L+A +G + E Sbjct: 134 FKAVQE--TGMAVEFTPLKDIELNDWVENRINGMGKNIETEAIDELVAAVGSNLRMLDAE 191 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL +Y + +I + V ++ T L I E+++A + AI L + P Sbjct: 192 LRKLFNYTGDRKVINREDVLQLVSKTTNLSIFELVDAVGERNSQKAIQLMREMIIYGEPP 251 Query: 248 HALLHGFLQKFQLL 261 LL + F+ L Sbjct: 252 VRLLFMVAKHFRTL 265 >gi|15892161|ref|NP_359875.1| DNA polymerase III subunit delta [Rickettsia conorii str. Malish 7] gi|15619292|gb|AAL02776.1| unknown [Rickettsia conorii str. Malish 7] Length = 324 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ ++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVHSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I E+ + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT V ++I Sbjct: 186 AREITLNDVLEVI 198 >gi|167626871|ref|YP_001677371.1| DNA polymerase III subunit delta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596872|gb|ABZ86870.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 325 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN + +F+ G + +I ++ +QFK K+ I+YHD LN ++N+ Sbjct: 11 KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHD------LN----EQNLDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + E++S SLFS K+I + +KK+ L + +I N +++ S K+N + + Sbjct: 61 LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSGMKKQNTSAK 120 Query: 129 KIAEKFTSVLAISCY-P--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + IS + P DN I+++D + L + S+++ A Q+L+ G+ IAS+ Sbjct: 121 WFQSLEHRAIHISIFNPNIDNAINIIDYEAKQLGL---SLTQPAVQLLVQKTEGNLIASK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|225378291|ref|ZP_03755512.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM 16841] gi|225209858|gb|EEG92212.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+ +++ILIEN K + L E + + + + E+ K + L K + + Sbjct: 68 PFFADRRVILIENSGFFKGSCEELAEYMPQVPDTTLFLFVEEEVDKRSKLYKAVKNVGKI 127 Query: 138 LAISCYPDNKIHLMDLIEESLLIG----QKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + I +L+ +L K+I+ Q+ L+ G D EL+KL Sbjct: 128 VEFT------IQTEELLTRWILTRLKKEGKNITGSVMQLFLSKTGTDMGNIDRELEKLIC 181 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 YC++ +I + V+ + + I +++NA + A+ L L K PS +++ Sbjct: 182 YCMDKDVIEAKDVEAVTTEQTTNKIFDMVNAIAEHNQKKALDLYYDLLTLKEPSMRIMYL 241 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP--MKRNILQ 295 ++FQ+L +K+ S F+ + I P ++RN+ Q Sbjct: 242 ISRQFQILLN---VKDMSQKGFDNNTMAQKAGIPPFAVRRNVTQ 282 >gi|89092045|ref|ZP_01165000.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] gi|89083780|gb|EAR62997.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] Length = 338 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 11/228 (4%) Query: 75 NSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRK 129 N+ SLF++KKII + S++ KK + L++ + ++I++I ++++ K + K Sbjct: 68 NALSLFAEKKIIELRLGSSKLNKKSSEILQQYLSNPAPDNILMIIADKLDGSSKKSAWFK 127 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K +++ I +P L + I + + + EA Q+L + G+ +A++ EL Sbjct: 128 AIDKCGAIVEI--WPVETAQLPNWIRQRAAQIELQLDDEAIQLLCDRIEGNLLAAKQELS 185 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL S + ++T V D + D+ I + +A +QG+ + Sbjct: 186 KL-SLLFPNQMVTADAVVDAVSDSSRYDIYGLSDAALQGQSARCCKILQVLRQDGTEPPV 244 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE--KNIIPMKRNILQ 295 +L ++ + L I + S SF+ + Q+ PM R Q Sbjct: 245 VLWALSKELRSLAAIQQA-QSSGQSFDAVCQRERIWGKRKPMARQAAQ 291 >gi|210609806|ref|ZP_03288113.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787] gi|210152733|gb|EEA83739.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787] Length = 326 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 7/232 (3%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+++++I++EN K L + I + +I +EI K L K A+ V Sbjct: 68 PFFAERRLIILENSGFFKNASPELSDYIKELPETTSMIFVESEIDKRGKLYKAAKDKGRV 127 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + ++ L+ I S+ K ++++ + L +G D + EL+KL Y L+ Sbjct: 128 VELGR--QDESTLLRWIAGSVRRENKQVTEQVIRFFLTKVGTDMENIQRELEKLFCYTLD 185 Query: 198 DILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT Q V++ IC T + I +++NA + + A+ +A K P +L + Sbjct: 186 KSEITAQDVEE-ICTTQITNQIFDMVNAVAEKQQRKALDYYYDLVALKEPPMRILFLLTR 244 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +F+LL + +K+ + + ++ + P QE R ++ +RE Sbjct: 245 QFRLLLE---VKDMDKRGYPRKEIASKVGLHPFVVGKYQEQARAFSSKALRE 293 >gi|229586433|ref|YP_002844934.1| DNA polymerase III subunit delta [Rickettsia africae ESF-5] gi|228021483|gb|ACP53191.1| DNA polymerase III, delta subunit [Rickettsia africae ESF-5] Length = 324 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 21/193 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ +++ SI Y D NIS+ +NS+ Sbjct: 22 ALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADL-------------NISSLEILLNSS 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + F +K++I I S + L+ I+ + N + I I + ++RK E + Sbjct: 69 NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEAITSSGSIRKFFETEEYL 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A++CY D++ + +I + K ISKEA L A+L GD +E+ KL + + Sbjct: 126 AAVACYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLIYFVHD 185 Query: 198 DILITEQHVKDII 210 IT V ++I Sbjct: 186 AREITLNDVLEVI 198 >gi|15604063|ref|NP_220578.1| DNA polymerase III subunit delta [Rickettsia prowazekii str. Madrid E] gi|7388403|sp|Q9ZDX5|Y189_RICPR RecName: Full=Uncharacterized protein RP189 gi|3860754|emb|CAA14655.1| unknown [Rickettsia prowazekii] gi|292571783|gb|ADE29698.1| DNA polymerase III, delta subunit [Rickettsia prowazekii Rp22] Length = 321 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 23/194 (11%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG DKG I ++ KN+ SI Y D +++ L+ L +NS Sbjct: 22 ALLLYGPDKGYIEKICTYLIKNLNMLQSSIEYED-LNILSLDIL------------LNSP 68 Query: 78 SLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + F +K++I + ++ LD L+ I+ + N + I ++ + +++K E Sbjct: 69 NFFGQKELIKVRSIGNS---LDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEY 124 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++CY D++ + +I L K ISKEA L +L GD +E+ KL + Sbjct: 125 LAVVACYHDDEAKIERIILGKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIFFAH 184 Query: 197 EDILITEQHVKDII 210 + IT HV ++I Sbjct: 185 DVHEITLNHVLEVI 198 >gi|269123150|ref|YP_003305727.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112] gi|268314476|gb|ACZ00850.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112] Length = 295 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 22/227 (9%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 +S F +E+N+ SLFS+ I++++N + K + + ++ + + + +II K+N Sbjct: 34 VSEFLSELNAGSLFSEPTILILKNANKVKDINNVIKNVNLNTFNDKDVIIDYEANKENKK 93 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 ++++ F V I +NK L+ I+E L K SK++ IL +G D + +N Sbjct: 94 IKELLNNF-EVHEILDDRENKNVLIKYIQERL----KCNSKDSNNILEI-IGQDFYSLKN 147 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E+ K+ SY L + ++K I+ +I + + K + +F + M Sbjct: 148 EIDKICSY-LNGEEFSFDNIKPILSKNTNFFIFNLTEDILNKK------MIEFPIKENM- 199 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-----KNIIP 288 ALL F+++ K+HI+ + NI++ + E KN+ P Sbjct: 200 --ALLSSLSNDFEIMYKLHIL-DIKNINYNNFKSQYENHKFFKNLNP 243 >gi|149173352|ref|ZP_01851982.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797] gi|148847534|gb|EDL61867.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797] Length = 338 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 23/252 (9%) Query: 16 NLFLSHF--VFIFYGSDKGLIFELINQFK-------KNISITYHDPFSLVVLNALEIQKN 66 N S F V + YG D+ + E I + ++ SIT +D LE + Sbjct: 11 NPAASEFGPVVVLYGDDRYMKQEAIKAIEPLVLGEEEDTSITRYDG------KRLEKELP 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIKK 123 ST ++E+ + S++ K+++++++ EK V LE+ + + +I+ K Sbjct: 65 PSTLFDELKTVSMWGDKRLVIVDD--AEKFVSAFRGKLEKYLEAPSKSSFLILDVKSWSK 122 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRI 182 + L K+ K L + C L I + + + QK IS+EA +L+ +G Sbjct: 123 STRLAKLVSKIG--LDLECKELKGGALAKWICDTAGQLHQKQISREAAALLVELVGTHCG 180 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 EL+KL+++ + I+ ++ ++ + +A G I +A+ D L Sbjct: 181 QIHQELEKLTTFVGDQPRISPDDIRAVVGGWKAETTWAMTDAVRDGNIGDALHYLDNLLV 240 Query: 243 SKMPSHALLHGF 254 + +L G Sbjct: 241 AGEAPQKILGGL 252 >gi|67459470|ref|YP_247094.1| DNA polymerase III subunit delta [Rickettsia felis URRWXCal2] gi|67005003|gb|AAY61929.1| DNA polymerase III, delta subunit [Rickettsia felis URRWXCal2] Length = 321 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 13/170 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++E + NIS+ +NS + F Sbjct: 22 ALLLYGPDKGYIEKIYKHLVKSLNM---------LQTSIEYSELNISSLEILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I S + L+ I+ + N + I EI + + +K E + A++ Sbjct: 73 QKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 CY D++ + +I + K ISKEA L A+L GD +E+ KL Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKL 179 >gi|99035034|ref|ZP_01314830.1| hypothetical protein Wendoof_01000344 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 330 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112 +S+ V++ + K+ S ++E+ + S+F+ KK+I + N+S + L+ ++ N H Sbjct: 45 YSVQVMDFAIVNKSPSLLFSELANASMFTSKKLIKLINVSG--GISKELKNVLDYNASGH 102 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 +++ +N++ N+ + E I+CY D+ +L D+I L Sbjct: 103 YVMMVANDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148 >gi|42520244|ref|NP_966159.1| hypothetical protein WD0364 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409982|gb|AAS14093.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 330 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112 +S+ V++ + K+ S ++E+ + S+F+ KK+I + N+S + L+ ++ N H Sbjct: 45 YSVQVMDFAIVNKSPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNASGH 102 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 +++ +N++ N+ + E I+CY D+ +L D+I L Sbjct: 103 YVMMVANDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148 >gi|302385261|ref|YP_003821083.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1] gi|302195889|gb|ADL03460.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1] Length = 323 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 33/293 (11%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L NQ K ++ F+ +++++ IS ++ F++ Sbjct: 16 VYLLYGEEAFLKNSYKNQMKAAVTAGDTMNFNQFEGKGIDVREIISLG----DTMPFFAE 71 Query: 83 KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 K++IL+EN S +++ L +I C +I ++S K++ +K+ E L Sbjct: 72 KRLILVENSGFFKSASEEMASYLSQIP-DTTC--LIFVESEVDKRSKMFKKVKE-----L 123 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI------LLANLGGDRIAS-RNELQKL 191 + ++ D+ + S G +S+E K+I L N+ GD + + R EL+KL Sbjct: 124 GYAA----EMERQDMAQLSRWAGT-LLSREGKKITGHTMELFLNMTGDDMENIRMELEKL 178 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 SY L +IT++ V+ I I +++ A + + A+ L + L K P +L Sbjct: 179 ISYTLGREIITDEDVETICTVRTTNKIFDMVAAIVNRQTKKAMDLYEDLLTLKEPPMRIL 238 Query: 252 HGFLQKF-QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++F QLL+ +KE +K ++ I P + R +++ Sbjct: 239 FLIARQFNQLLQ----VKELMGKGMDKGGISSKLKIPPFAAGKIMPQARTFSR 287 >gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO] gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO] Length = 1379 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 15/165 (9%) Query: 99 DC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 DC +E + ++ N ++I +K N LRK+ E F V +S YP + + ++ Sbjct: 27 DCKIESVFFDSVSNELLIKTDRCVKNTNELRKLLESFFEV-PVSFYPVEAFKEISIDVDA 85 Query: 158 L---LIGQ----KSISKEAKQILL---ANLGGDRIASR-NELQKLSSYCL-EDILITEQH 205 L L G +S + E ++++L G DRI S+ N+++ L S L +D+ I Q Sbjct: 86 LRRELNGSFPYVQSAAVEGEKVVLKVSGEFGRDRIKSKMNQVKDLISKQLGKDLEIHVQV 145 Query: 206 VKD-IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 V+ I + H L +EE+ + + + +D+ S +PS++ Sbjct: 146 VESQAIVEKHDLIVEEVQDQKKKSRNRKRYQKSDYLTPSNLPSNS 190 >gi|257869953|ref|ZP_05649606.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2] gi|257804117|gb|EEV32939.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2] Length = 341 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 37/246 (15%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + KF+Q+ + FL+ F S L F + +P LV+ Sbjct: 24 TEKFLQEQVRQAFLTRFEV----SKDDLNFASFD--------MEREPLDLVI-------- 63 Query: 66 NISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIII 116 E S F +++I +E L+ EKK LD + +KN + +++ Sbjct: 64 ------QEAQSLPFFGDQRLIFVERPFFLTAEKKANVPEHDLDDFL-LYLKNPMDTAVLV 116 Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 E K + +KI ++ + I P + + ++++L +++EA ++ L Sbjct: 117 IFAEYDKLDERKKITKQLKKAGIIIDVAPMKEADVRRYLQQTLTNDGIEMTREAFELFLR 176 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 + ELQKL Y +D IT++ V+ +I T + E+ N +QGK+ +A Sbjct: 177 LTDLHLSKAMQELQKLRLYAGKDAKITKEIVQQLIPKTLEHNVFELTNDVLQGKVADAWR 236 Query: 236 LADFFL 241 L D L Sbjct: 237 LYDDLL 242 >gi|257454414|ref|ZP_05619676.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60] gi|257448180|gb|EEV23161.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60] Length = 339 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 40/256 (15%) Query: 73 EINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT--LRK 129 E+NS SLF K I++ N +K+ L L + N N ++II KK+ + Sbjct: 68 ELNSLSLFDDNKAIIVHGNHKPDKEALAELAQFATSNPSNCLVIISDKYDKKSQSSAFFS 127 Query: 130 IAEKFTSVLAISCY------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + +KF V+ Y + H D E ++K A Q+L+A + +A Sbjct: 128 LCDKFGQVIECHLYQEQQREQLLQQHAQDFGLE--------LTKPAWQMLIAQTQHNLLA 179 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE--IINATIQGKIYNAIMLADFFL 241 + L +L SY D T + I+E + + + ++ L+D L Sbjct: 180 AYQSLWRL-SYLYA--------TTDANPPTRFVTIDESQLFDGLVSQSMFTTFDLSDAML 230 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 A Q ++L+++ +E ++ +I K +NI+ ++ +SL IW Sbjct: 231 AGDTA---------QVAKILQQLKASEEPESLVL-WMIAKDMRNILSLQSGASYQSLGIW 280 Query: 302 N--KNLVRETLHKIDH 315 + L + LH+ H Sbjct: 281 QSKQQLYSKALHRHSH 296 >gi|254292381|ref|YP_003058404.1| DNA polymerase III subunit delta [Hirschia baltica ATCC 49814] gi|254040912|gb|ACT57707.1| DNA polymerase III, delta subunit [Hirschia baltica ATCC 49814] Length = 334 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 85/181 (46%), Gaps = 9/181 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D G++ + + + +V L+ E++K+ +++ SL Sbjct: 21 VVLAFGEDLGVVSDAAQTLVQKWRKVENSELDIVRLHEDELKKDPGLLTEHLSAVSLLGI 80 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+I+ + N S K+++ +++I + + +I+++ E+KK++ LR F++ Sbjct: 81 KQILRVRLSNESIAKQLIAIVDQIATGKLYPENFLILEAGELKKSSKLRT---SFSTSPD 137 Query: 140 ISC---YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 +C + D+ + + I L I + A + A L GDR + E++KLS Y Sbjct: 138 TACLQFFADSDVETSEYIRIKLSDQNIQIDELALEQFAAELPGDRRLANAEIEKLSLYAF 197 Query: 197 E 197 + Sbjct: 198 D 198 >gi|297584662|ref|YP_003700442.1| DNA polymerase III subunit delta [Bacillus selenitireducens MLS10] gi|297143119|gb|ADH99876.1| DNA polymerase III, delta subunit [Bacillus selenitireducens MLS10] Length = 343 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 61/313 (19%), Positives = 140/313 (44%), Gaps = 21/313 (6%) Query: 23 VFIFYGSDKGLIFELINQ-FKKNISITYHD-PFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++ YG++ L+ +++ + ++++S +D +S +N + I+ + E + Sbjct: 18 VYVLYGTETYLMEDVMQRILRQSLSDDEYDFNYSKFDMNEIPIELAV----EEAFTFPFM 73 Query: 81 SKKKIILIEN---LSTEKKVLD------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 K+++LI + L+ +K D L + + ++II ++ K + + + Sbjct: 74 GGKRVVLIRDPWFLTAQKPKTDVEHNTDALLTYVSQAPEETVMIIMASYEKLDERKKLVK 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 E P ++ L D I + KEA L G D + +E+ KL Sbjct: 134 ELKKQTRVFKAEPMSERELRDWISAKSADAEVQFEKEAADAFLTLTGADLMIMSSEINKL 193 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + Y + +IT++ V D++ + I +++AT++ +I A+ + L K +L Sbjct: 194 TLYAADGGVITKEIVYDLVARSLEEDIFALVDATVKQRIDEAMKIYKDLLKQKEAPIKIL 253 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVR--E 308 +++F++L H +KE + + + + I P + + + + K +L++ + Sbjct: 254 ALVVRQFRIL---HQVKELKDQGYSEKAMAGKLKIHPYVVKLAAKQVSSFRKHDLLKQID 310 Query: 309 TLHKIDHRIHLAR 321 L ++DH+I R Sbjct: 311 ELAELDHQIKTGR 323 >gi|241667450|ref|ZP_04755028.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875998|ref|ZP_05248708.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842019|gb|EET20433.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 325 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 22/187 (11%) Query: 15 KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN + +F+ G + +I ++ +QFK K+ I+YHD LN ++N+ Sbjct: 11 KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHD------LN----EQNLDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + E++S SLFS K+I + +KK+ L + +I N +++ S K+N + + Sbjct: 61 LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSGMKKQNTSAK 120 Query: 129 KIAEKFTSVLAISCY-PD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + IS + P+ N I+++D + L + S+++ A Q+L+ G+ IAS+ Sbjct: 121 WFQSLEHRAIHISIFNPNIHNAINIIDYEAKQLGL---SLTQPAIQLLVQKTEGNLIASK 177 Query: 186 NELQKLS 192 ++ LS Sbjct: 178 QIIKLLS 184 >gi|281356142|ref|ZP_06242635.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC BAA-548] gi|281317511|gb|EFB01532.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC BAA-548] Length = 358 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 29/64 (45%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 KSI A Q L LGGD RNEL+KL SY + IT + + C T E Sbjct: 163 KSIEPAAAQFLTETLGGDSGTLRNELEKLFSYTGDAPAITLNDCRAVCCRTPETVSWEFT 222 Query: 223 NATI 226 A + Sbjct: 223 GAIV 226 >gi|283795071|ref|ZP_06344224.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1] gi|291077412|gb|EFE14776.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1] Length = 415 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 8/190 (4%) Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEI---IIKNICNHIIIIKSNEIKKNNTLRKIA 131 N+ FS++++IL+E+ K D L E I C ++ ++S K+N +K+ Sbjct: 156 NTMPFFSERRLILVEDSGFFKAASDELVEAMADIPDTTC--MVFVESAVDKRNRLYKKVK 213 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 E A + L L + I+ ++ L G D +EL+KL Sbjct: 214 E---LGYAAELKKQDASQLARWAAGILARNGRKITAATMELFLEKTGDDMETISSELEKL 270 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 SY + ++T + V+ + I E++NA + GK A+ L + L K P +L Sbjct: 271 ISYTMGREVVTAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKEPPMRIL 330 Query: 252 HGFLQKFQLL 261 ++F L Sbjct: 331 FLIARQFNQL 340 >gi|225677392|ref|ZP_03788360.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590568|gb|EEH11827.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 338 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 51 DPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC 110 D +S+ V++ + K+ ++E+ + S+F+ KK+I + N+S + L+ ++ N Sbjct: 43 DEYSVQVMDFAIVNKSPGLLFSELANISMFTSKKLIKLINVS--GGISKELKNVLDYNAS 100 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 H +++ + ++ N+ + E I+CY D+ +L D+I L Sbjct: 101 GHYVMMTATDLPHNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148 >gi|328876798|gb|EGG25161.1| hypothetical protein DFA_03409 [Dictyostelium fasciculatum] Length = 2186 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 21 HFVFIFYGSDKGLI--FELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 H+ + +G + G I F+L Q KK++SI PF LVV+ L+ QKN F N N Sbjct: 888 HYAKVIHGKECGAIASFDLTKEQQKKDLSICLESPFPLVVITLLDEQKNSVPFSNTPNPK 947 Query: 78 SL 79 SL Sbjct: 948 SL 949 >gi|119477449|ref|ZP_01617640.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] gi|119449375|gb|EAW30614.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] Length = 335 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 24/262 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +Q+ N L ++I G + L+ E + ++ FS VL+ + S Sbjct: 8 LQQHLSNTLLP--LYIVSGDEGLLVQECCDAIRR---CCRKQGFSREVLHV-----DASF 57 Query: 70 FWNEI----NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK---NIC-NHIIIIKSNEI 121 W+++ N+ SLFS+KK LIE K D + + + NI +++++I N++ Sbjct: 58 DWSDLLASANAMSLFSEKK--LIELRMPTGKPGDAGGKALTQYSGNISPDNVLLIICNKL 115 Query: 122 KKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESL-LIGQKSISKEAKQILLANLGG 179 + ++T K + + A + C+P + L I + L ++G K+ S EA Q+L + G Sbjct: 116 EASSTRTKWYKAVEAAGASVPCWPIDAKQLPRWISQRLNMVGLKADS-EALQMLADRVEG 174 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E++KL + E+ +I + + D + +I+ I G + ++ + Sbjct: 175 NLLAAAQEIEKLRLFS-ENNIIDADTIAAAVADNARYDVFGLIDRAIAGDVRGSLKILQG 233 Query: 240 FLASKMPSHALLHGFLQKFQLL 261 A ALL ++ + L Sbjct: 234 LKAEGTEPLALLWAITRELRTL 255 >gi|170017694|ref|YP_001728613.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20] gi|169804551|gb|ACA83169.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20] Length = 333 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 100/215 (46%), Gaps = 13/215 (6%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIII 116 Q+++S ++ S F +++ILI+N L+ + K+ D L ++I + +++++ Sbjct: 56 QQDLSEVIDDAMSLPFFGDRRVILIQNPEFLTAKGKISETNQDQLSKLIESPVADNVVVF 115 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++K + + + I N+ I + L ++S +A Q L+ Sbjct: 116 LINDLKIDKRKKITKQVLKHAEQIELAALNESAAKQAITQQLQQQNYTMSPDALQELVVR 175 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 NEL KL +Y + D IT V ++ T + ++++A + KI A+++ Sbjct: 176 TNAQYTVMVNELPKLLAYAVYDKKITLDAVNALVPKTLTANVFDLVDAVMTKKIKQALII 235 Query: 237 ADFFLASKMPS---HALLHGFLQKFQLLEKIHIIK 268 L + P+ +A+L G +F+LL ++ +K Sbjct: 236 YRALLQNGEPALRVNAVLTG---QFRLLIQVAGLK 267 >gi|60117405|gb|AAX14459.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila mojavensis] Length = 177 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112 +S+ V++ + K S ++E+ + S+F+ KK+I + N+S + L+ ++ N+ H Sbjct: 45 YSVQVMDFAIVNKLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGH 102 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 +++ ++++ N+ + E I+CY D+ +L D+I L Sbjct: 103 YVMMVASDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148 >gi|291550850|emb|CBL27112.1| DNA polymerase III, delta subunit [Ruminococcus torques L2-14] Length = 327 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 9/188 (4%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI-IIIKSNEIKKNNTLRKI--AEKF 134 F+++++I+ EN K IK++ I EI K N L K ++ + Sbjct: 68 PFFAERRLIVFENTGFFKTAAGADLADYIKDMPETTCFIFVEEEIDKRNKLYKAVKSKGY 127 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L+ K + L+ + QK IS+ L +G D + EL+K+ Y Sbjct: 128 IAELSTQDAGTLKRWVAGLVRKE----QKQISESVIVYFLDKVGTDMENIQGELEKVFCY 183 Query: 195 CLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 LE IT++ + D +C T + +I E+++A G A+ L LA K P +L Sbjct: 184 ALERDTITKEDI-DAVCVTQITNHIFEMVDAVAAGNQQKALDLYYELLALKEPPMRILFL 242 Query: 254 FLQKFQLL 261 ++++++L Sbjct: 243 LVRQYRML 250 >gi|224086395|ref|XP_002307879.1| predicted protein [Populus trichocarpa] gi|222853855|gb|EEE91402.1| predicted protein [Populus trichocarpa] Length = 644 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 145 DNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + IH+ I +L+ QK I + +IL+ LG DR+ ++ + L DI +T Sbjct: 182 EAGIHVRRQIYPEILLHQKLDDILPQLYEILITELGIDRLKQMLGIEGGTQRGLSDIFVT 241 Query: 203 EQHVKDII----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 EQ ++ I+ + V I++I+++ ++ AD+ + P H + +G LQ Sbjct: 242 EQGMRRIVEMLGTEGFVDQIDDILSSE------ENVLFADYTV--PFPVHRISYGILQSK 293 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +I+ F+ + K + P R IL+ Sbjct: 294 DAAGAFKLIEVELGFMFDVLFTKVMTTVCPRPRIILR 330 >gi|58698431|ref|ZP_00373341.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630216|ref|YP_002727007.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi] gi|58535054|gb|EAL59143.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592197|gb|ACN95216.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi] Length = 330 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112 +S+ V++ + K S ++E+ + S+F+ KK+I + N+S + L+ ++ N+ H Sbjct: 45 YSVQVMDFAIVNKLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGH 102 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 +++ ++++ N+ + E I+CY D+ +L D+I L Sbjct: 103 YVMMVASDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148 >gi|148241175|ref|YP_001226332.1| DNA polymerase III subunit delta [Synechococcus sp. RCC307] gi|147849485|emb|CAK26979.1| DNA polymerase III, delta subunit [Synechococcus sp. RCC307] Length = 321 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 33/201 (16%) Query: 111 NHIIIIKSNE----IKKNNTLRKIAE--KFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 +H++++ + + ++ LRK+AE KF + AI + L++L++ S Q Sbjct: 95 SHLVLVSAGKPDARLRTTKALRKVAEEKKFP-LPAIW----DGAGLIELVQRSAAAAQLQ 149 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH--VLYIEEII 222 + A ++L +G D EL+KL+ YC E + E VK + L + E Sbjct: 150 LEPAAAELLADTIGNDSSRLAGELEKLALYCGEKAVDVE-AVKALAGPAQHNALAVGE-- 206 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHAL-------LHGFLQKFQLLEKIH-----IIKEC 270 A + G + A+ D +A+ P L L G+L LLE+ +I + Sbjct: 207 -ALLAGDVGGALTQIDGLMAANEPPLRLVASLVSQLRGWLW-LTLLEQSGEQDPMVIAKA 264 Query: 271 SNISFEK---IIQKTEKNIIP 288 + I K +++K + + P Sbjct: 265 AGIGNPKRIYVMRKQLRGVRP 285 >gi|329770384|ref|ZP_08261766.1| DNA polymerase III [Gemella sanguinis M325] gi|328836507|gb|EGF86167.1| DNA polymerase III [Gemella sanguinis M325] Length = 326 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 21/186 (11%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79 ++I YG + FE IN F+K ++ Y +L N ++ N +T N E S+ L Sbjct: 4 IYIVYGEN----FEAINDFEKKVAQNYLK--TLDEFNYIKFNMNDTTIENLVYECRSSGL 57 Query: 80 FSKKKIILIEN----LSTEKKV-LDCLEEII---IKNICNHIIII-KSNE-IKKNNTLRK 129 F +K+++ EN L+ KK+ +D E++ ++NI + +I+I KSNE I + K Sbjct: 58 FGNEKVVVAENCNFLLAKPKKLKVDHNIEVLSNYLENISSEVILILKSNEKIDSRKKIVK 117 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 ++ + S + N+ + D I E++ ISKE Q L+ D + E++ Sbjct: 118 KIKEIGEIKEFSNF--NETQIADYIVEAVKEKNLKISKENAQFLVNYTRLDFANIKREIE 175 Query: 190 KLSSYC 195 KL YC Sbjct: 176 KLVLYC 181 >gi|47459195|ref|YP_016057.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K] gi|47458524|gb|AAT27846.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K] Length = 310 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 42/273 (15%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG++ LI+ NQ KK IS + +P + + NI NEI S LFS Sbjct: 1 MYFIYGNENYLIW---NQIKKLISKSKTEPI------IFDEESNIYELINEIESYDLFSN 51 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICN------HIIIIKSNEIKKNNTLRKIAEKFTS 136 +K I+++NL KK L EI+I ++ N I +++ ++I N+L + Sbjct: 52 EKTIIVKNLWLLKKEDKKLSEILISSLENINSKYKIIFLLEEDKINNKNSLIHFLLNNSK 111 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V + Y N L+ +IE+ ++ + +IS EA + + D E+ KL Sbjct: 112 VDNVKKY--NPKELISVIEKIIVAKKGTISHEAIIEFILKVPNDLRIIIQEIDKL----- 164 Query: 197 EDILITEQHVKDIICDTHVLYIE----EIINA-----------TIQGKIYNAIMLADFFL 241 +L+T+ K+I+ Y E INA T+Q KI N + L Sbjct: 165 --LLLTKDITKEIVISETSDYFESDAFSFINAINEFDFKKIYETLQEKIINYEEIGQ--L 220 Query: 242 ASKMPSHALLHGFLQ-KFQLLEKIHIIKECSNI 273 ++ SH L + FQL + + I+E NI Sbjct: 221 LGQLNSHLNLSFLIHTNFQLGKNLKKIEEQYNI 253 >gi|222445688|ref|ZP_03608203.1| hypothetical protein METSMIALI_01329 [Methanobrevibacter smithii DSM 2375] gi|222435253|gb|EEE42418.1| hypothetical protein METSMIALI_01329 [Methanobrevibacter smithii DSM 2375] Length = 432 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 10/147 (6%) Query: 77 TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEK 133 T + KK IL + + + EE I+K++ N I+I SN +I+ + + K Sbjct: 2 TQIMDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTK 61 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + S ++D EE +L Q +I A ++ ++GGD R + +S Sbjct: 62 VNATVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSP 114 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEE 220 + + + + ++ I D V+Y+EE Sbjct: 115 LPVGSVPVYQAAIERIRKDGSVVYMEE 141 >gi|148643448|ref|YP_001273961.1| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii ATCC 35061] gi|148552465|gb|ABQ87593.1| thiamine biosynthesis protein, ThiC [Methanobrevibacter smithii ATCC 35061] Length = 432 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 10/147 (6%) Query: 77 TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEK 133 T + KK IL + + + EE I+K++ N I+I SN +I+ + + K Sbjct: 2 TQIMDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTK 61 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + S ++D EE +L Q +I A ++ ++GGD R + +S Sbjct: 62 VNATVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSP 114 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEE 220 + + + + ++ I D V+Y+EE Sbjct: 115 LPVGSVPVYQAAIERIRKDGSVVYMEE 141 >gi|58584436|ref|YP_198009.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418752|gb|AAW70767.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 336 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 12/111 (10%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKII----LIENLSTE-KKVLDCLEEIIIK 107 +S+ +++ + K+ ++E+ + S+F+ KK+I + N+S E K VLD Sbjct: 45 YSVQMMDFAMVNKSPGLLFSELANISMFTSKKLIKLINVTGNISKELKNVLDY------- 97 Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 N H +I+ + ++ N+T++ E + I+CY ++ +L D+I L Sbjct: 98 NAGGHYVIMIATDLSYNSTIKSYIESSKTFGVIACYKNSGSNLYDIISSYL 148 >gi|331090750|ref|ZP_08339597.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330399858|gb|EGG79517.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 328 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 15/169 (8%) Query: 164 SISKEAKQI-------LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 ++ KE KQI LL+ G D + E++KL Y L + +I + + D IC + Sbjct: 145 NVKKEGKQIAESTIYYLLSKCGTDMENLQKEMEKLFCYTLNNDVINMEDI-DAICTMQIT 203 Query: 217 -YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 I +++NA + K A+ LA K P+ +L+ ++F+LL + +KE + + Sbjct: 204 NEIFDMVNAVAEKKQKRALDRYYDLLALKEPAMRILYLLSRQFRLLME---VKEMAGEGY 260 Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLAR 321 +K ++ + P E R +++ +R+ L + I+ R+ R Sbjct: 261 DKKTIASKAGLHPYAVGKYIEQSRSFSQEELRKILEESVDIEERVKTGR 309 >gi|312216522|emb|CBX96472.1| hypothetical protein [Leptosphaeria maculans] Length = 752 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 T +L I CY +N+ L+ I+ L+ Q+ + A+ + G R E + Sbjct: 279 TLMLIIPCYNENEGELLSSIDS--LVEQRGLHGYARACFIICDGRARGPGMTET---TGD 333 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 CL D ++TE+ + I ++ Y E ++ TIQ IY + +F KM Sbjct: 334 CLLDTILTEKTYRKHIEKAYIAYDNEPMDVTIQKGIYRGL---PYFCIVKM 381 >gi|238923979|ref|YP_002937495.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656] gi|238875654|gb|ACR75361.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656] Length = 336 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 25/249 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + ++ D + I QK I + F+ Sbjct: 16 VYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++ILIE+ K D L E + + H I ++ + + K + L K A K Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123 Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192 C N + + +E+L IG K +S+ A + G D EL+KL Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC++ +I V+ + + + E+++A K A+ L LA K P+ +++ Sbjct: 181 CYCMDKDVIELSDVETVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240 Query: 253 GFLQKFQLL 261 ++F +L Sbjct: 241 LISRQFNIL 249 >gi|291524724|emb|CBK90311.1| DNA polymerase III, delta subunit [Eubacterium rectale DSM 17629] Length = 336 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 25/249 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + ++ D + I QK I + F+ Sbjct: 16 VYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++ILIE+ K D L E + + H I ++ + + K + L K A K Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123 Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192 C N + + +E+L IG K +S+ A + G D EL+KL Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC++ +I V+ + + + E+++A K A+ L LA K P+ +++ Sbjct: 181 CYCMDKDVIELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240 Query: 253 GFLQKFQLL 261 ++F +L Sbjct: 241 LISRQFNIL 249 >gi|254479241|ref|ZP_05092585.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM 12653] gi|214034810|gb|EEB75540.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM 12653] Length = 338 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 40/224 (17%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++FYG ++ L+ + + + K + + + + +V+ ++ + + FS Sbjct: 18 LYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYVEAIIENCETLPFFSN 77 Query: 83 KKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KI++++N + K++ D + +++ N ++++ +I L K EK Sbjct: 78 YKIVVVKNEEEQLSKIGDKELKRLTDYFKNMVLGNTSLVVVVVSGEKIDSRKKLYKFMEK 137 Query: 134 FTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +V+ P+ ++ L K +K+ + L+ N+G D + NEL+K+ Sbjct: 138 EAAVVEFKKLTPEEAVNYAGYF---LKKHGKKAAKKDVEYLVKNIGTDLYSIVNELEKVI 194 Query: 193 SYCLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAI 234 +Y + L E+ V + +V ++ I + + Y A+ Sbjct: 195 AYSEGETLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238 >gi|239616501|ref|YP_002939823.1| flavin reductase domain protein FMN-binding [Kosmotoga olearia TBF 19.5.1] gi|239505332|gb|ACR78819.1| flavin reductase domain protein FMN-binding [Kosmotoga olearia TBF 19.5.1] Length = 172 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 28/134 (20%) Query: 112 HIIIIKSNEIK----KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 ++I K+NE K N + +AE T +AI N H D I+ES + G +S+ Sbjct: 14 YVITSKTNEKKNGQIANVVFQVVAEPPT--IAICINKQNLTH--DFIQESRVFGVSVLSQ 69 Query: 168 EAKQILLANLGGDRIASRNELQK---------------LSSYCLEDILITEQHVKDIICD 212 + L+ + G S EL K L YC+ ++ +V D+ Sbjct: 70 DTPLKLIGHFG---FRSGRELDKFKEINHKIGVTGVPLLEDYCIANLEAKVVNVVDV--G 124 Query: 213 THVLYIEEIINATI 226 THVLYI EI+NA + Sbjct: 125 THVLYIGEIVNAEV 138 >gi|291563976|emb|CBL42792.1| DNA polymerase III, delta subunit [butyrate-producing bacterium SS3/4] Length = 325 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 75 NSTSLFSKKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 ++ F++++++LI+ S +++++ + EI ++ C ++ NE+ K N L K Sbjct: 64 DTMPFFAERRLVLIDGSGFFKSSAPEELVNYIPEIP-ESTC---MVFVENEVDKRNKLYK 119 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + A + LM L K I+++ + + G D R EL+ Sbjct: 120 KVK--DNGYAAELKKQDADQLMRWAAGILSKDGKKITRQVMEYFMERTGDDMENIRMELE 177 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL Y + +IT++ V +++ HV I E++ A + G A+ L + L K P Sbjct: 178 KLICYTMGREVITKEDV-EVVGTVHVTNRIFEMVTAIVAGNTRKAMDLYEDLLTLKEPPM 236 Query: 249 ALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTE 283 ++ ++F QLL+ +KE + K QK+E Sbjct: 237 RIMFLIAKQFNQLLQ----VKELAG----KGAQKSE 264 >gi|327401013|ref|YP_004341852.1| Type II site-specific deoxyribonuclease [Archaeoglobus veneficus SNP6] gi|327316521|gb|AEA47137.1| Type II site-specific deoxyribonuclease [Archaeoglobus veneficus SNP6] Length = 216 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 22/137 (16%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 G + ELI +FKK+ TY + K+ T N+ L + K ++EN Sbjct: 56 GQMTELIKEFKKDGGWTYEE------------WKDWYTR-KYPNTIKLATNKVHNMLENF 102 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 KKVLD L+E I++ +++IK+ E + + L+K+AE+ S ++ PD + Sbjct: 103 ---KKVLDELDEEIVRRWVEDLVLIKTYEGLVLQEAILKKVAEELNSTYRLAT-PDEESK 158 Query: 150 LMDLIEESLLIGQKSIS 166 +D + L+I K + Sbjct: 159 GIDGV---LIIDNKEVP 172 >gi|88860572|ref|ZP_01135210.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudoalteromonas tunicata D2] gi|88817770|gb|EAR27587.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudoalteromonas tunicata D2] Length = 346 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 19/135 (14%) Query: 71 WNEI----NSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 W E+ NS SLFS +KII ++ ++ K L L E + I+I+K Sbjct: 60 WQELEQHFNSLSLFSDRKIIELDLGEQKAGTSGSKTLKWLAETSNPDC---ILILKG--- 113 Query: 122 KKNNTLRKIAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 KN T + F ++ AI CY + HL+ + + Q +++ +AK LL + Sbjct: 114 AKNGTDVQKTAWFKALEAIGLFVPCYEISGNHLLTWLNQHCQTLQLNLAHDAKLFLLEST 173 Query: 178 GGDRIASRNELQKLS 192 G+ +A+ EL+KLS Sbjct: 174 QGNLLATYQELEKLS 188 >gi|291528954|emb|CBK94540.1| DNA polymerase III, delta subunit [Eubacterium rectale M104/1] Length = 336 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 25/249 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + + D + I QK I + F+ Sbjct: 16 VYLLYGQERYLIKQYRDKLIKAM-VNEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++ILIE+ K D L E + + H I ++ + + K + L K A K Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123 Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192 C N + + +E+L IG K +S+ A + G D EL+KL Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC++ +I V+ + + + E+++A K A+ L LA K P+ +++ Sbjct: 181 CYCMDKDVIELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240 Query: 253 GFLQKFQLL 261 ++F +L Sbjct: 241 LISRQFNIL 249 >gi|56963415|ref|YP_175146.1| DNA polymerase III subunit delta [Bacillus clausii KSM-K16] gi|56909658|dbj|BAD64185.1| DNA polymerase III delta subunit HolA [Bacillus clausii KSM-K16] Length = 340 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 53/266 (19%), Positives = 113/266 (42%), Gaps = 18/266 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V+ YG+++ LI + + + + + + + L + + E + FSK Sbjct: 18 VYFLYGTERYLIEQFLQKASEALFAGEEGEMNDIRLRLQDT--PLGEVVEEAETVPFFSK 75 Query: 83 KKIILIEN--LSTEKKV-------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 +K+++I++ L+T +KV + LE + ++++ + K + + + Sbjct: 76 RKLVVIQDFYLATSQKVATKLEHDIPALEAYLDSPAQETVLVVVAPYEKLDERKKITKKL 135 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 AI P ++ +E +I ++AKQ+L G + + EL+K Sbjct: 136 KKQTSAIDVNPFDEKETFAWMEAIAKQEGVAIEQDAKQLLYKRTGPNLMLLHRELEKCML 195 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL-- 251 Y + +T V +++ +T + +I+ T +G+ +A+ L L K A+L Sbjct: 196 YSKDGDPVTASIVDELVAETVEQSVFTVIDYTAKGRAGDAVRLYHQLLRQKEEPLAILAL 255 Query: 252 --HGFLQKFQL---LEKIHIIKECSN 272 F Q FQ+ L K + KE ++ Sbjct: 256 LTRQFRQFFQVKTRLAKGYTQKEMAS 281 >gi|154502623|ref|ZP_02039683.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149] gi|153796815|gb|EDN79235.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149] Length = 337 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 30/198 (15%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+++++I+ EN K L E I I E+ K + L K Sbjct: 80 PFFAERRLIVFENTGLFKSSGADLAEYIKTMPETTYFIFVEEEVDKRSKLYK-------- 131 Query: 138 LAISCYPDNKIHLMDLI--EESLL----IGQKSISKEAKQI-------LLANLGGDRIAS 184 A+ K H+++L +ES L +G ++ +E KQI L +G D Sbjct: 132 -AVKA----KGHIVELPFQDESTLKRWILG--NVRREGKQISDASVGYFLGKVGTDMQNI 184 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLAS 243 + EL+KL Y L +IT + + D +C + +I E++NA + K A+ L LA Sbjct: 185 QGELEKLFCYTLHRDVITPEDI-DAVCINQIGNHIFEMVNAVAEKKQRKALDLYYELLAL 243 Query: 244 KMPSHALLHGFLQKFQLL 261 K P +L ++++++L Sbjct: 244 KEPPMRILFLLVRQYRIL 261 >gi|46446734|ref|YP_008099.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila UWE25] gi|46400375|emb|CAF23824.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila UWE25] Length = 343 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 12/255 (4%) Query: 52 PFSLVVLNALEI----QKNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCLEEIII 106 P V+ ++EI Q + ++E+ S +LF+ K++ I+N KK +++ LE+ Sbjct: 48 PSPNVLEESIEIIDGTQTTLDMLFSELYSHNLFADKRLFWIQNADKLKKNLIEALEKYFP 107 Query: 107 KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYP-DNKIHLMDLIEESLLIGQKS 164 + + +I+ + K + K AEK +L ++ P + + L++ + L +K Sbjct: 108 QIPSSQYLILSAPSWNKQTSFYKAAEKEGIILELTEPKPWEKEKKLIEWASKQLSAKRKI 167 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 I + Q+L+ G D E++KL Y + IT+Q + I I ++ A Sbjct: 168 IPYQVCQLLVKQTGLDSSLLIQEIEKLLCYIGDRNEITQQDIIKICNYQPSDTIWQLGEA 227 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 + AI++A L LL +FQ + HI C ++ K Q+ Sbjct: 228 LFKRDGLAAILIAQSLLTEGQSLLPLLRQIRSQFQT--QFHI---CVMLANGKAAQEISH 282 Query: 285 NIIPMKRNILQESLR 299 +K N+L +++ Sbjct: 283 EFPYLKGNLLDRTIQ 297 >gi|254456431|ref|ZP_05069860.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] gi|207083433|gb|EDZ60859.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] Length = 330 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 23/196 (11%) Query: 18 FLSHFVFIFYGSDKGLIFELINQF---KKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 F + + +FYG ++GL + N K+NIS Y + EI +N + F + Sbjct: 13 FDQNKLILFYGKNEGLKNDSTNNLLKNKENIS-KYEEK---------EILENTNIFLENV 62 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI----IIIKSNEIKKNNTLRKI 130 SLF +KII+I K+V D + +II + I III ++ ++K + LR Sbjct: 63 FCKSLFENEKIIII------KRVTDKILKIIEEIEEKKIEDLKIIINADILEKKSKLRSF 116 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK + ++ YPD L L + SIS +++ GDR NEL K Sbjct: 117 FEKSREHVCVAFYPDTNQVLSKLTYNFFNQKKISISPANINLIVNKCNGDRETLFNELDK 176 Query: 191 LSSYCLEDILITEQHV 206 + + ITE+ + Sbjct: 177 IEYFSKSGKKITEESI 192 >gi|194476915|ref|YP_002049094.1| hypothetical protein PCC_0445 [Paulinella chromatophora] gi|171191922|gb|ACB42884.1| hypothetical protein PCC_0445 [Paulinella chromatophora] Length = 322 Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 19/128 (14%) Query: 121 IKKNNTLRKIA--EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ N L+KIA +KF + A+ YP+ K +L+ +++ I+ +A ++L +G Sbjct: 109 LQTNKLLKKIAIEQKFM-LPALWDYPNQK----ELVRQTIHKTGLRINNQALEVLSTAVG 163 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE-----EIINATIQGKIYNA 233 D + +NE++KL+ Y I+ E V ++Y++ EI A I+G+I A Sbjct: 164 KDSMNLKNEIEKLALYSGHKIITAEAVVA-------LIYLQSTNNLEIGIALIKGQIGEA 216 Query: 234 IMLADFFL 241 I L D L Sbjct: 217 ISLIDILL 224 >gi|288869602|ref|ZP_05975181.2| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii DSM 2374] gi|288860548|gb|EFC92846.1| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii DSM 2374] Length = 428 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 10/144 (6%) Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTS 136 KK IL + + + EE I+K++ N I+I SN +I+ + + K + Sbjct: 1 MDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTKVNA 60 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + S ++D EE +L Q +I A ++ ++GGD R + +S + Sbjct: 61 TVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSPLPV 113 Query: 197 EDILITEQHVKDIICDTHVLYIEE 220 + + + ++ I D V+Y+EE Sbjct: 114 GSVPVYQAAIERIRKDGSVVYMEE 137 >gi|325262637|ref|ZP_08129374.1| DNA polymerase III, delta subunit [Clostridium sp. D5] gi|324032469|gb|EGB93747.1| DNA polymerase III, delta subunit [Clostridium sp. D5] Length = 329 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 26/199 (13%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+++++++ EN K L + I + I NE+ K + L F +V Sbjct: 68 PFFAERRLLVFENTGFFKSAGADLADYIKEMPDTTFFIFIENEVDKRSKL------FKAV 121 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSI----SKEAKQI-------LLANLGGDRIASRN 186 A K H+++L + + +K + KE KQI LL +G D + Sbjct: 122 KA-------KGHIVELPFQDEMTLKKWVLGLVRKENKQISESTVTYLLNKVGTDMENIQK 174 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKM 245 EL+KL Y LE I + V D +C T + +I +++NA K A+ L +A K Sbjct: 175 ELEKLFCYTLEKDGILPEDV-DAVCVTQISNHIFDMVNAVADKKQERALELYYELVALKE 233 Query: 246 PSHALLHGFLQKFQLLEKI 264 P +L+ +++++L ++ Sbjct: 234 PPMRILYLMTRQYRILHQV 252 >gi|47224193|emb|CAG13113.1| unnamed protein product [Tetraodon nigroviridis] Length = 827 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 12/90 (13%) Query: 73 EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHI---IIIKSNEIKKNNTLR 128 E STS K K + +N+S E+KV +CLEE+ ++C + I + +TL+ Sbjct: 605 ETESTSSIRKHKAAVAKNVSQREEKVKECLEELT--SLCKQLGKAFGIHYYNMFSTSTLK 662 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 KIAEK +SC P+ + + + E+ L Sbjct: 663 KIAEK------LSCEPEELLQIDGVTEDKL 686 >gi|239995377|ref|ZP_04715901.1| putative DNA polymerase III, delta subunit, probably ATP hydrolase [Alteromonas macleodii ATCC 27126] Length = 342 Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 37/249 (14%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I ++F Q TK L + VF G + F++I Q + + +++V Sbjct: 3 IYPNQFSQDITKALRPCYLVF---GDEPQQKFDVIEQIRAKAKANGFEERTVLVAE---- 55 Query: 64 QKNISTF-WNEI----NSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIII 115 + F WN++ S SLFS ++ I +E L T K + L+E+ + +++ Sbjct: 56 ----TGFNWNQLIEATQSMSLFSSQQFIELE-LPTGKPGTEGSKMLQEVAASLNPDILLL 110 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + +I K+ K + + A + CYP L + + L Q S+S +++ Sbjct: 111 VHGPKIGKDVQRGKWFKVLDDLGASVLCYPLEGKQLNAWLNQQLNAHQLSVSASGAKMIA 170 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 G+ +A++ E+ KL+ +L Q + D E+I A + +N Sbjct: 171 DFCEGNMLAAKQEIDKLA------LLYPHQSISD----------EQIEKAMVDQSRFNVF 214 Query: 235 MLADFFLAS 243 L D L+ Sbjct: 215 QLVDVMLSG 223 >gi|257414009|ref|ZP_04744970.2| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82] gi|257201505|gb|EEU99789.1| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82] Length = 342 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 4/185 (2%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 F+ +++ILIE+ K + L E + + H I ++ E+ K + + K + Sbjct: 82 PFFADRRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEE-EVDKRSKMYKTVKNNGK 140 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 ++ S + L I L K+I+ Q+ L+ G D EL+KL Y L Sbjct: 141 IVEFSAQSEE--LLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYAL 198 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +IT + V + + I E++NA + A+ L L K P ++ + Sbjct: 199 DRDVITAEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITR 258 Query: 257 KFQLL 261 +FQ+L Sbjct: 259 QFQIL 263 Searching..................................................done Results from round 2 >gi|319407833|emb|CBI81486.1| putative DNA polymerase III [Bartonella sp. 1-1C] Length = 347 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 181/348 (52%), Gaps = 1/348 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + K+ S + + YG D+GL+ E +F K + +PFS V L+A Sbjct: 1 MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFSTVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SLF ++I I N + +K L L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITELPEASFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L N+G D Sbjct: 120 LKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNVTLSLEARQYLHQNIGED 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR+EL+KL Y L+ I + VK I+ D L +E+++A + G + + + + Sbjct: 180 RLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVVDAVLLGDLASFEIYFSRY 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A S +L+ + FQ L+ + E + +I + + I ++ I++++LR Sbjct: 240 CAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFTVISQAQPPIFFQRKKIIEQALRY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 WN + + KI I +RK L + II Q +L + A NNF Sbjct: 300 WNLEKILCAMKKIQSAILESRKNPPLSEVIIHQVLLKLTIIAKCQNNF 347 >gi|319404873|emb|CBI78474.1| putative DNA polymerase III [Bartonella rochalimae ATCC BAA-1498] Length = 347 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 180/348 (51%), Gaps = 1/348 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + K+ S + + YG D+GL+ E +F K + +PFS V L+A Sbjct: 1 MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFSTVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SLF ++I I N + +K L L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITEPPEASFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L N+G D Sbjct: 120 LKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNATLSLEARQYLHQNIGED 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR+EL+KL Y L+ I + VK I+ D L +E+I+A + G + + + Sbjct: 180 RLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVIDAVLLGDLASFEIYFSRC 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A S +L+ + FQ L+ + E + +I + + I ++ I++++L+ Sbjct: 240 CAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFIVISQAQPPIFFQRKKIVEQALKY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 WN + + KI I +RK L + II Q +L + A NNF Sbjct: 300 WNLEKILYAMKKIQSAILESRKNPLLSEVIIHQALLKLTIIAKHQNNF 347 >gi|319406358|emb|CBI79997.1| putative DNA polymerase III [Bartonella sp. AR 15-3] Length = 347 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 176/347 (50%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + K+ S + + YG D+GL+ E +F K + +PF+ V L+A Sbjct: 1 MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFTTVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SLF ++I + N + ++ L L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLGDEARTLSLFGGDRLIWVSNGANQQGFLKALKLLITEPPEASFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L N+G D Sbjct: 120 LKKGVGLRNIIEMASTAIALPCYTDNTHSLDILIDEILGEFNITLSLEARQCLHQNIGED 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR+EL+KL Y + + + VK I+ D L +E+I+A + G + Sbjct: 180 RLASRSELEKLCLYTFKKAHVAFEDVKAIVSDVSTLSQDEVIDAVLLGDLVGFETYFSCC 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +A S +L+ + FQ L+ + E + ++ + + I ++ I++++LR Sbjct: 240 IAVNKTSLFVLNTAQRHFQQLQLLRYQIEIEGKNSFVVVSQAQPPIFFQRKKIVEQALRY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 WN + + KI I +RK L + II + +L + A N Sbjct: 300 WNLEKILYAMKKIQSAILESRKNPLLSEAIIHKVLLKLTIIAKNQKN 346 >gi|240851360|ref|YP_002972763.1| putative DNA polymerase III subunit delta [Bartonella grahamii as4aup] gi|240268483|gb|ACS52071.1| putative DNA polymerase III subunit delta [Bartonella grahamii as4aup] Length = 346 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + + + + YG D+GLI E F K + DPFS + L+A Sbjct: 1 MAQKKAHE-VDQFLTRFSRAFPIVLIYGPDRGLICERAQCFAKLTQVAIEDPFSTIRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + NE + SLF ++I I N + +K L L+ +I K + I+I+S + Sbjct: 60 AEIDKDPARLENEARTLSLFGGDRLIWISNAANQKGFLAALKILIEKPPESCFILIESGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR + E + +A+ C+ D+ L LI+E L +K++S +A++ L +LG D Sbjct: 120 LKKGTGLRNVVETSSKAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHESLGAD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ SR EL+KL Y ++ IT + VK I+ D L +E+I+A + G I + Sbjct: 180 RLISRGELEKLCLYA-ANVHITLEDVKAIVSDVSALSQDEVIDALLLGDISGFEAHFNRH 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A +L + FQ L+ + E S ++ + I ++ ++++L+ Sbjct: 239 AALHGALFFILSAAQRHFQQLQLLRYQVEVEGKSPFTVVSQARPPIFFQRKKTVEQALKY 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W + + +I + +RK L + II Q +L + A + Sbjct: 299 WKLEQISYAMERIQGAVLDSRKNPLLGEAIIRQVLLGLTIIARRQ 343 >gi|121602554|ref|YP_988388.1| DNA polymerase III subunit delta [Bartonella bacilliformis KC583] gi|120614731|gb|ABM45332.1| DNA polymerase III, delta subunit [Bartonella bacilliformis KC583] Length = 347 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 1/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + S + + YG D+GL+ E + +F K I DPF+ V L+A Sbjct: 1 MAQKKAHE-VDHFLTHFSRSFPIVLIYGPDRGLVCERVQRFIKLTQIATDDPFATVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SLF +++ + N + +K L+ L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLGDEARTLSLFGSDRLVWVSNGANQKNFLEALKLLIAEPPEKSFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E + +A+ CY D+ L LI+E L + ++S EA++ L +LGGD Sbjct: 120 LKKGIGLRNIVETASVAMALPCYADDVRSLDTLIDEVLESFKMTLSLEARKGLYESLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + SR EL+KL Y E IT + VK ++ D +E+I+A + G + + Sbjct: 180 HLVSRRELEKLCLYASEKRHITLEDVKAVVSDVSAFSSDEVIDAILLGDGKEFEVHFSRY 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +A +L + FQ L+ + E + ++ + I ++ ++++L+ Sbjct: 240 VAMHNTPFLVLSTAQRHFQQLQILRYQVEIEQKTAFAVMSQARPPIFFQRKKTVEKALKY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W + + KI + +RK L + II + +L + + Sbjct: 300 WTLEKISYAMEKIQCALLESRKNPLLGEAIIHRVLLELVFMIRRQ 344 >gi|49474792|ref|YP_032834.1| DNA polymerase III subunit delta [Bartonella quintana str. Toulouse] gi|49240296|emb|CAF26774.1| hypothetical protein BQ13150 [Bartonella quintana str. Toulouse] Length = 354 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 1/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + S + + YG D+GL+ E + +F K I DPFS V L+A Sbjct: 1 MAQKKAHE-VDHFLTHFARSFPIVLIYGPDRGLVCERVQRFVKLTQIAVEDPFSTVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SLF ++I + N + +K L L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLVDEARTLSLFGGDRLIWVSNGAHQKNFLAVLKILIKEPPEKSFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E + +A+ C+ D+ L L+ E L + +IS +A++ LL +LGGD Sbjct: 120 LKKGTGLRNIIESASIAMALPCFADDIRALDTLVNEVLDHFKMTISLDARKWLLHHLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + SR EL+KL Y LE I + VK ++ D L +E+I+A + G I Sbjct: 180 HLVSRGELEKLCLYALEKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDIAGFEAHFSRH 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + +L+ + FQ L+ + + S +I + + I ++ ++ +L Sbjct: 240 ATLQNALFFILNTAQRHFQQLQLLRYQIDVEGKSAFTVISQAQPPIFFQRKKTIEHALNY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W + + ++ + +RK L + II Q +L +A A + Sbjct: 300 WGMEQISYAMERLQGAVLESRKNPLLGEAIIRQALLALAIIARRQ 344 >gi|319409430|emb|CBI83079.1| putative DNA polymerase III [Bartonella schoenbuchensis R1] Length = 346 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 175/345 (50%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + S + + YG D+GL+ E +F K + DPFS + LNA Sbjct: 1 MAVKKAHE-VDHFLTHFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIDDPFSTIRLNA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ +E ++ SLF ++I I N + +K L L+ +I + ++I++ + Sbjct: 60 AEIDKDPVRLQDEAHTLSLFGGDRLIWISNGANQKGFLAALKLLIKEPPKACFVLIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E ++ LA+ CY D+ L +I+E L + ++S EA++ L +LG D Sbjct: 120 LKKGVGLRNIVETASTALALPCYTDDIRSLDRVIDEVLNNFKMTLSLEARKWLYESLGAD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ SR EL+KL Y L+ +T + VK ++ + L +E+I+A + G + M + Sbjct: 180 RLISRGELEKLCLYALKKDQVTLEDVKAVVSEASALSQDEVIDAILLGDVAGFEMHFSRY 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + +L + FQ L+ + E + +I + I + +N ++++L+ Sbjct: 240 ATMQNTLFFVLSAAQRHFQQLQLLRYQVEVEGKAAFAVISQARPPIFFVGKN-VEKALKY 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W + + KI + +RK +L + I+ Q +L +A +A K Sbjct: 299 WGLEQIAYAMEKIQCAVLDSRKNPFLGEAIVHQVLLGLAVSAQKR 343 >gi|319899480|ref|YP_004159577.1| hypothetical protein BARCL_1344 [Bartonella clarridgeiae 73] gi|319403448|emb|CBI77016.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 347 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 173/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + K S + + YG D+GL+ E +F K + +PFS V L+A Sbjct: 1 MAHKKAHE-VDQFLKYFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIENPFSTVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + NE + SLF ++I + N K L L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLGNEARTLSLFGGDRLIWVSNGDNHKGFLKALKFLITEPPKKSFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E ++ +A+ CY DN L LI+E L ++S EA+Q L N+G D Sbjct: 120 LKKGVGLRNIIEMASTAIALPCYADNVHSLNGLIDEILDEFSITLSLEARQCLHQNIGED 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR+EL+KL Y L+ I + VK ++ D L +E+I+A + G + + Sbjct: 180 RLASRSELEKLCLYALKKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDLAGFETYFSRY 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + +L+ + FQ L+ + E + +++ + I ++ ++++LR Sbjct: 240 VVINSRFLFILNVAQRNFQQLQLLRYQVEIEGKNSFEVVAQARPPIFFQRKKKVEQALRY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 WN + + KI I +RK L + II Q +L + A + + Sbjct: 300 WNLEQILYAMKKIQSAILESRKNPLLNETIIHQLLLELTIIAKRQKD 346 >gi|49476274|ref|YP_034315.1| DNA polymerase III subunit delta [Bartonella henselae str. Houston-1] gi|49239082|emb|CAF28385.1| hypothetical protein BH16220 [Bartonella henselae str. Houston-1] Length = 350 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 169/350 (48%), Gaps = 1/350 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++H+ + K S + + YG D+GL+ E + F K I DPF V L+A Sbjct: 1 MVQKKAHE-VDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI K+ + +E + SL ++I + N + +K LD L+ +I + I+I++ + Sbjct: 60 AEIDKDPARLLDEARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E + +A+ C+ D+ L LI+E L + +++ +A++ LL +LGGD Sbjct: 120 LKKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + SR+EL+KL Y LE I + VK ++ D L +E+I+ + G + + Sbjct: 180 HLVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRY 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + +L + FQ L+ + + + I + + I ++ ++ +L Sbjct: 240 ATLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSY 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350 W + + + +I H + +RK L + II Q +L +A A + K Sbjct: 300 WGREQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQMTALK 349 >gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] gi|254040481|gb|ACT57277.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA Sbjct: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE Sbjct: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD Sbjct: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF Sbjct: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI Sbjct: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT Sbjct: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 >gi|163869289|ref|YP_001610545.1| DNA polymerase III subunit delta [Bartonella tribocorum CIP 105476] gi|161018992|emb|CAK02550.1| putative DNA polymerase III [Bartonella tribocorum CIP 105476] Length = 346 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 172/345 (49%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + + + + + YG D+GLI E +F K + DPFS + L+A Sbjct: 1 MAQKKAHE-VDQFLTRFSRAFPIVLIYGPDRGLICERAQRFAKLTKVAIEDPFSTIRLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +I K+ + NE + SLF ++I I + + +K L L+ +I K I+I++ + Sbjct: 60 ADIDKDPACLENEARTFSLFGGDRLIWISHAANQKGFLAALKLLIEKPPEKSFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR + E + +A+ C+ D+ L LI+E L +K++S +A++ L +LG D Sbjct: 120 LKKGTGLRNVIETAANAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHESLGVD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ SR EL+KL Y L ++ IT + VK I+ D L +EII+A + G I + Sbjct: 180 RLVSRGELEKLCLYAL-NVHITLEDVKAIVSDVSALSQDEIIDALLLGDISGFEAHFNRH 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + +L + FQ L+ + E + ++ + I ++ ++++++ Sbjct: 239 AALQGALFFILSTAQRHFQQLQLLRYQVEVEGKTPVTVVSQARPPIFFQRKKNVEQAVKY 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W + + +I + +RK L + II Q +L + A + Sbjct: 299 WKLEQISYAMERIQSAVLESRKNPLLGEAIIRQALLGLTIIARRQ 343 >gi|222087924|ref|YP_002546462.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84] gi|221725372|gb|ACM28528.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84] Length = 345 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 182/344 (52%), Gaps = 1/344 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I+SH+F +N ++ +F+ YG D+GL+ E Q + DPFSL+ L+ Sbjct: 1 MSEIKSHEF-DGFLQNAARNYRLFVIYGPDRGLVSERAGQVAGKTGVDLKDPFSLIKLDV 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++Q + +E+N+ LF +K++ I + EK ++D L+ I +II++ + Sbjct: 60 GDLQNDAGRLLDEVNAIGLFGGEKLVWIRGAANEKALIDSLQIIADNPPNASFVIIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK + LRK+AE + + CY D+ L LI+ L IS A+Q+LL LGGD Sbjct: 120 LKKGSGLRKVAEASRKIATVPCYADDGRALNSLIDTELASENLRISPAARQMLLELLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNE++KL+ YC + I E HV DII D + ++ ++A ++G + Sbjct: 180 RIASRNEVRKLALYCRGEGTIEEGHVADIIGDASAISADDAVDAILKGDSDAFLHAMQKI 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ASK +L G L++FQLL+ + + + +++Q +++ ++ I++++LR Sbjct: 240 AASKTSMFLVLQGCLRQFQLLDVMRTEMDEKRVPPAQVMQTLGRHLHFRRKPIIEQALRS 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W + ++++ I R++ LE I QT+L + + Sbjct: 300 WTAPAIAREMNRLQSAILQTRQRASLEDTIATQTLLATTLQSAR 343 >gi|148559309|ref|YP_001259862.1| DNA polymerase III subunit delta [Brucella ovis ATCC 25840] gi|148370566|gb|ABQ60545.1| DNA polymerase III, delta subunit [Brucella ovis ATCC 25840] Length = 388 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 42 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 100 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+++ ++ + + I+I++ + Sbjct: 101 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLVEAVKRLAAEPPQETFILIEAGD 160 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 161 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 220 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 221 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 280 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 281 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 340 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 341 WTGESLTRIMERLQRAVLESRRNAALSVPIIRQGLLAISVESLRNAR 387 >gi|225626436|ref|ZP_03784475.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo] gi|237816407|ref|ZP_04595400.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A] gi|225618093|gb|EEH15136.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo] gi|237788474|gb|EEP62689.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A] Length = 388 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 42 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 100 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 101 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 160 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 161 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 220 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 221 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 280 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 281 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 340 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 341 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 387 >gi|86359696|ref|YP_471588.1| DNA polymerase III subunit delta [Rhizobium etli CFN 42] gi|86283798|gb|ABC92861.1| putative DNA polymerase III, delta subunit protein [Rhizobium etli CFN 42] Length = 346 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 7/347 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSAGN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNGLIDAELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCSGLNTVEEHHVSEIIGDASAISVDDAVDAVLSGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDMMRAEMEEKRVQAPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 LR W+ + +++ I +R+++ LE ++ QT+L + + Sbjct: 297 LRHWSAENIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343 >gi|241206935|ref|YP_002978031.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860825|gb|ACS58492.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 346 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 189/347 (54%), Gaps = 7/347 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKST+N + +F+ YG D+GL+ E +Q + DPFSL Sbjct: 1 MAEIKSHEFESFLQKSTRN----YRIFVIYGPDRGLVSERASQLAGKSGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E+ S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAESARSVMTIPSYADDSRALNGLIDTELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +E+ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVEDAVDAILGGDLNAFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + + + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQTPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 LR W + +++ I +R+++ LE ++ QT+L + + Sbjct: 297 LRQWTAESIARECNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343 >gi|294851286|ref|ZP_06791959.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|294819875|gb|EFG36874.1| DNA polymerase III [Brucella sp. NVSL 07-0026] Length = 346 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 171/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+ EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATHGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|23502905|ref|NP_699032.1| DNA polymerase III subunit delta [Brucella suis 1330] gi|62290901|ref|YP_222694.1| DNA polymerase III subunit delta [Brucella abortus bv. 1 str. 9-941] gi|82700812|ref|YP_415386.1| DNA polymerase III subunit delta [Brucella melitensis biovar Abortus 2308] gi|161619971|ref|YP_001593858.1| DNA polymerase III subunit delta [Brucella canis ATCC 23365] gi|163844075|ref|YP_001628479.1| DNA polymerase III subunit delta [Brucella suis ATCC 23445] gi|189025114|ref|YP_001935882.1| DNA polymerase III subunit delta [Brucella abortus S19] gi|254690189|ref|ZP_05153443.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|254694679|ref|ZP_05156507.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|254696305|ref|ZP_05158133.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|254702353|ref|ZP_05164181.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|254705058|ref|ZP_05166886.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|254707425|ref|ZP_05169253.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|254709034|ref|ZP_05170845.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|254731222|ref|ZP_05189800.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|256030559|ref|ZP_05444173.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|256158555|ref|ZP_05456445.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|256253964|ref|ZP_05459500.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|256258443|ref|ZP_05463979.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260169464|ref|ZP_05756275.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|260546162|ref|ZP_05821902.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260567473|ref|ZP_05837943.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260755730|ref|ZP_05868078.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260758954|ref|ZP_05871302.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260760676|ref|ZP_05873019.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|260884756|ref|ZP_05896370.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|261215007|ref|ZP_05929288.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|261221106|ref|ZP_05935387.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261314910|ref|ZP_05954107.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261316533|ref|ZP_05955730.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261752916|ref|ZP_05996625.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261755761|ref|ZP_05999470.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|261758991|ref|ZP_06002700.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|265987607|ref|ZP_06100164.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|265997067|ref|ZP_06109624.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|297247285|ref|ZP_06931003.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str. B3196] gi|306842828|ref|ZP_07475468.1| DNA polymerase III, delta subunit [Brucella sp. BO2] gi|23348936|gb|AAN30947.1| conserved hypothetical protein [Brucella suis 1330] gi|62197033|gb|AAX75333.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616913|emb|CAJ12014.1| putative DNA polymerase III, delta subunit [Brucella melitensis biovar Abortus 2308] gi|161336782|gb|ABX63087.1| DNA polymerase III, delta subunit [Brucella canis ATCC 23365] gi|163674798|gb|ABY38909.1| DNA polymerase III, delta subunit [Brucella suis ATCC 23445] gi|189020686|gb|ACD73408.1| putative DNA polymerase III, delta subunit [Brucella abortus S19] gi|260096269|gb|EEW80145.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038] gi|260156991|gb|EEW92071.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40] gi|260669272|gb|EEX56212.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292] gi|260671108|gb|EEX57929.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str. 86/8/59] gi|260675838|gb|EEX62659.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870] gi|260874284|gb|EEX81353.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68] gi|260916614|gb|EEX83475.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str. Tulya] gi|260919690|gb|EEX86343.1| DNA polymerase III subunit delta [Brucella ceti B1/94] gi|261295756|gb|EEX99252.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94] gi|261303936|gb|EEY07433.1| DNA polymerase III subunit delta [Brucella pinnipedialis M163/99/10] gi|261738975|gb|EEY26971.1| DNA polymerase III subunit delta [Brucella sp. F5/99] gi|261742669|gb|EEY30595.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513] gi|261745514|gb|EEY33440.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686] gi|262551535|gb|EEZ07525.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1] gi|264659804|gb|EEZ30065.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1] gi|297174454|gb|EFH33801.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str. B3196] gi|306287022|gb|EFM58533.1| DNA polymerase III, delta subunit [Brucella sp. BO2] Length = 347 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|254718099|ref|ZP_05179910.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|265983052|ref|ZP_06095787.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306839724|ref|ZP_07472526.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653] gi|264661644|gb|EEZ31905.1| DNA polymerase III subunit delta [Brucella sp. 83/13] gi|306405184|gb|EFM61461.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653] Length = 347 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGDSLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|256370455|ref|YP_003107966.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] gi|256000618|gb|ACU49017.1| DNA polymerase III subunit delta [Brucella microti CCM 4915] Length = 347 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ I +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|254713540|ref|ZP_05175351.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|254716105|ref|ZP_05177916.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261217876|ref|ZP_05932157.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261321274|ref|ZP_05960471.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] gi|260922965|gb|EEX89533.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1] gi|261293964|gb|EEX97460.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1] Length = 347 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEMVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|256060021|ref|ZP_05450203.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261323998|ref|ZP_05963195.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] gi|261299978|gb|EEY03475.1| DNA polymerase III subunit delta [Brucella neotomae 5K33] Length = 347 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAINR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ I +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|17986295|ref|NP_538929.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|225853488|ref|YP_002733721.1| DNA polymerase III subunit delta [Brucella melitensis ATCC 23457] gi|256045659|ref|ZP_05448537.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|256263032|ref|ZP_05465564.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|260562961|ref|ZP_05833447.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|265992081|ref|ZP_06104638.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|17981878|gb|AAL51193.1| DNA polymerase iii, delta subunit [Brucella melitensis bv. 1 str. 16M] gi|225641853|gb|ACO01767.1| DNA polymerase III, delta subunit [Brucella melitensis ATCC 23457] gi|260152977|gb|EEW88069.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. 16M] gi|263003147|gb|EEZ15440.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str. Rev.1] gi|263092905|gb|EEZ17080.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str. 63/9] gi|326410052|gb|ADZ67117.1| DNA polymerase III subunit delta [Brucella melitensis M28] gi|326539769|gb|ADZ87984.1| DNA polymerase III, delta subunit [Brucella melitensis M5-90] Length = 347 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARSTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|190893974|ref|YP_001980516.1| DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652] gi|190699253|gb|ACE93338.1| putative DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652] Length = 346 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 188/347 (54%), Gaps = 7/347 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLTEKPLEATYLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE +V+ + Y D+ L LI+ L + I+ A+Q LLA + Sbjct: 117 AGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALLALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +++Q +++ ++ IL+++ Sbjct: 237 QKISSSKAAIFLVLQACLKQFQLLDTMRAEMEEKRVQAPQVMQTMGRHLHFRRKPILEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 LR W+ + + +++ I +R+++ LE +I QT+L + + Sbjct: 297 LRQWSADSIARESNRLQAAILQSRRRQVLEDSIAMQTLLSTTLQSGR 343 >gi|256112381|ref|ZP_05453302.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|265993816|ref|ZP_06106373.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] gi|262764797|gb|EEZ10718.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str. Ether] Length = 347 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ + DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARSTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L EE+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTEEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|306843473|ref|ZP_07476074.1| DNA polymerase III, delta subunit [Brucella sp. BO1] gi|306276164|gb|EFM57864.1| DNA polymerase III, delta subunit [Brucella sp. BO1] Length = 347 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H+ + S V + YG DKGL+ E ++ ++ DPF+++ + A Sbjct: 1 MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLSLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N +KK+ + ++ + + I+I++ + Sbjct: 60 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ +A+Q+L A+LGGD Sbjct: 120 LKKGAGLRSAIENASAGMALPCYSDDARGIDGVIDDILAEWKMQIALDARQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+++A + G + + D Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL +++FQ ++ + I + S ++ I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ + +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346 >gi|209551497|ref|YP_002283414.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537253|gb|ACI57188.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 346 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 186/347 (53%), Gaps = 7/347 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERAAQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDPLALLAEKPLEAAHLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE S++ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSIMTIPSYADDSRALNTLIDAELSAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNGFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + E + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 LR W + +++ I +R+++ LE ++ QT+L + + Sbjct: 297 LRQWTAEAIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343 >gi|153008199|ref|YP_001369414.1| DNA polymerase III subunit delta [Ochrobactrum anthropi ATCC 49188] gi|151560087|gb|ABS13585.1| DNA polymerase III, delta subunit [Ochrobactrum anthropi ATCC 49188] Length = 347 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 174/347 (50%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++++ + S V + YG DKGL+ E +F + + DPF+++ + A Sbjct: 1 MAQKKANE-VDSFLARPTNSFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N + +KK+ + ++ + + +++++ + Sbjct: 60 DEIEADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPLETFVLVEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E ++ +A+ CY D+ + +I++ L + I+ + +Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDSRGIDGVIDDVLAEWKMQITLDGRQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+I+A + G + + D Sbjct: 180 RLATRGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEVSFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL+ +++FQ ++ + I + S ++ I ++ +++ S+ Sbjct: 240 VKSGTAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAAARPPIFFNRKKLVENSVSR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + ++ I +R+ L II Q +L I+ + +N Sbjct: 300 WTGESLARVMERLQRAILESRQNAALAIPIIRQCLLAISVESLRNAR 346 >gi|239833098|ref|ZP_04681427.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG 3301] gi|239825365|gb|EEQ96933.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG 3301] Length = 347 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 175/347 (50%), Gaps = 1/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++++ + S V + YG DKGL+ E +F + + DPF+++ + A Sbjct: 1 MAQKKANE-VDSFLARPTSSFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI+ + + +E + S+F +++I I+N + +KK+ + ++ + + +++++ + Sbjct: 60 DEIEADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPQETFVLVEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR E + +A+ CY D+ + +I++ L + I+ + +Q+L A+LGGD Sbjct: 120 LKKGAGLRSAVENAPAGMALPCYSDDSRGIDGVIDDVLAEWKIQITLDGRQLLRASLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL Y I V++ + D L +E+I+A + G + + D Sbjct: 180 RLATRGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEISFDRV 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + S LL+ +++FQ ++ + I + S ++ T I ++ +++ ++ Sbjct: 240 VKSGTAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAATRPPISFNRKKLIENAVSR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W+ + + ++ + +R+ L II Q +L I+ A +N Sbjct: 300 WSGESLARVMERLQRAVLESRQNASLAIPIIRQCLLAISVEALRNAR 346 >gi|116254458|ref|YP_770296.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. viciae 3841] gi|115259106|emb|CAK10217.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 346 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 187/347 (53%), Gaps = 7/347 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E + + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERASLLAARSGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++QK+ +E+ S LF +K+I I + EK ++D L + K + +I++ Sbjct: 57 LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAASLIVE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A + Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNALIDTELGAEKLGITPAARQALIALI 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + + Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNAFLHAM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +SK +L L++FQLL+ + + + +I+Q +++ ++ I++++ Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQPPQIMQTMGRHLHFRRKPIIEQA 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 LR W + +++ I +R+++ LE ++ QT+L + + Sbjct: 297 LRQWTAESIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343 >gi|222150241|ref|YP_002551198.1| DNA polymerase III subunit delta [Agrobacterium vitis S4] gi|221737223|gb|ACM38186.1| DNA polymerase III, delta subunit [Agrobacterium vitis S4] Length = 347 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 184/350 (52%), Gaps = 7/350 (2%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M ++SH+F +QKS ++ + +F+ YG D GL+ E K+ + DPFS++ Sbjct: 1 MVEVKSHEFDGFLQKSVRH----YKMFLVYGPDVGLVAERAAALAKSTGVALDDPFSVIR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L++ ++Q + +E+N+ LF +++ I ++ EK V+D L+ + + +I++ Sbjct: 57 LDSGDLQSDPGKLLDEMNALGLFGGDRLVWIRGIANEKSVVDGLQILAKDPPDSSCLILE 116 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + ++KK + RKIAE ++ I CY D+ + LI+ K ++ A+ +L +L Sbjct: 117 AGDLKKGSATRKIAEPARNIAVIPCYQDDARAINALIDAEFSAAVKRLTPAARSLLSESL 176 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GGDR ASRNE+ KL YCL D L+ E HV+ II D + +E ++A + G + Sbjct: 177 GGDRRASRNEISKLLLYCLHDDLVDETHVEQIIGDASAVSTDEAVDAVLAGNSDALLHAV 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 SK P +L G L++FQLL+ + + +++Q + + ++ + ++S Sbjct: 237 QKIATSKTPMFLVLQGCLRQFQLLDIMRSEMDEKRQQAGQVMQTLGRQVHFKRKPLFEKS 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L+ W + + + ++ I +R++ LE ++ QT+L I + + + Sbjct: 297 LKNWPSDALSVEMRRLQAAILASRRQPSLEDSLSLQTLLAITLQSARRSR 346 >gi|325294120|ref|YP_004279984.1| DNA polymerase III, delta subunit [Agrobacterium sp. H13-3] gi|325061973|gb|ADY65664.1| putative DNA polymerase III, delta subunit [Agrobacterium sp. H13-3] Length = 345 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 184/346 (53%), Gaps = 1/346 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I+SH+F ++ +N VF+ YG D+GL+ E N K I D F+ + L+A Sbjct: 1 MTEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERANLIAKKTGIDPDDAFASLKLSA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++Q + +E+N+ LF +K++ I++ S EK ++D L+ + +II++ + Sbjct: 60 SDLQGDPGRLLDEVNAIGLFGGEKLVWIKSASAEKALVDALQILAETPPEASFLIIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRKIAE S+ AI CY D+ L LI++ L I+ A+Q L+ LGGD Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSADNLRIAPAARQRLIEQLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNE++KL+ YC +I E V II D + ++ ++A ++G Sbjct: 180 RIASRNEIRKLALYCRGAEVIEEDDVLAIIGDASTVSADDAVDAILKGDRNAFFHATQKI 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ++SK P +L G L++FQLL+++ + +++Q ++I ++ +++ +LR Sbjct: 240 VSSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPVIERALRT 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 W + ++++ I +R+++ LE ++ T+L + + Sbjct: 300 WQPAAIAREMNRLQAAILQSRQRQSLEDSVALLTLLSTTLQSGRGG 345 >gi|15889999|ref|NP_355680.1| DNA polymerase III subunit delta [Agrobacterium tumefaciens str. C58] gi|15157968|gb|AAK88465.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 345 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 185/346 (53%), Gaps = 1/346 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I+SH+F ++ +N VF+ YG D+GL+ E K I D F+ + L A Sbjct: 1 MAEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERAGLIAKKTGIDPDDAFASLKLTA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++Q + +E+N+ LF +K++ +++ S EK ++D L+ + +II++ + Sbjct: 60 SDLQGDPGRLLDEVNAIGLFGGEKLVWVKSASAEKALVDALQILADTPPEASFLIIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRKIAE S+ AI CY D+ L LI++ L I+ A+Q L+ LGGD Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSANNLRIAPAARQRLIEQLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNE++KL+ YCL +I E + II D + ++ ++A ++G Sbjct: 180 RIASRNEIRKLALYCLGADVIEEDDILAIIGDASTVSADDAVDAILKGDRNAFFHATQKI 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ++SK P +L G L++FQLL+++ + +++Q ++I ++ I++ +LR Sbjct: 240 ISSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPIIERALRT 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 W + ++++ I +R+++ LE+++ T+L + + Sbjct: 300 WQPAAIAREMNRLQAAILQSRQRQSLEESVALLTLLSTTLQSGRGG 345 >gi|150398392|ref|YP_001328859.1| DNA polymerase III subunit delta [Sinorhizobium medicae WSM419] gi|150029907|gb|ABR62024.1| DNA polymerase III, delta subunit [Sinorhizobium medicae WSM419] Length = 343 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 181/345 (52%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I+SH+F + + +F+ YG D+GL+ E + I DPF++V ++A Sbjct: 1 MSEIKSHEF-DNFLQRSAAGYRLFLLYGPDRGLVSERATALAETFGIPLDDPFAVVKMDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +Q + +E+N+ LF +K++ + STEK ++D L+ + +I+++ + Sbjct: 60 TGLQG-AGSLLDEVNAIGLFGGEKLVWMRGASTEKALIDALQFLASDPPVGARLIVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK+ E SV +I+CY D+ L LI++ L IS ++ L+ LGGD Sbjct: 119 LKKGAALRKVGESSRSVASIACYSDDARGLQALIDKELSDAGLRISPAGRERLMDALGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASRNEL+KL+ YCL ++ E V I+ D + +++ ++A ++G + Sbjct: 179 RMASRNELRKLALYCLGKDMVDEVDVLGIVGDASAISVDDAVDAVLKGDPDALLHAMKKI 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 SK P +L L++FQ L+ + + + +++ + + ++ +++ +L+ Sbjct: 239 TTSKTPPFLVLQACLRQFQQLDVMRAEMDANRQPPAQVVATLGRGLHFRRKPVVEAALKH 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W +R L ++ I+ +R ++ LE++++ Q +L I + + Sbjct: 299 WTAPAIRRELSRLQSTIYQSRSRQSLEESLVIQNLLAITIQSARR 343 >gi|163757460|ref|ZP_02164549.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43] gi|162284962|gb|EDQ35244.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43] Length = 342 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 1/343 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I++H+F + + + YG D+GL+ E Q + D FS++ L A Sbjct: 1 MAQIKNHEF-AGFVRRQGTPFRIVLVYGPDRGLVSERAAQVAAKTGVDLSDDFSVLKLEA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + +E + SLF +++ I+N E+ ++D + + + ++I++ + Sbjct: 60 SDLSGDPGRLADEFGAISLFGGDRLVWIKNAGNERGLVDAVAAVSQSDPGTSHLLIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK E + LAI CY D+ + LI+E L +I EA+Q L LGGD Sbjct: 120 LKKGAGLRKTIEAAKTALAIPCYADDARGVQALIDEELGGAGLTIQGEARQRLSQLLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL+ YC +T+ V + I D L +++ I A G + Sbjct: 180 RLASRGELKKLALYCHGSGTVTDADVVEAIGDVAALSVDDAIEAVFSGDPGRLEAALERI 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 LASK +L G + + + L+ + + E + +++ + I ++ I++ +LR Sbjct: 240 LASKTSVFLVLRGCMVQLEQLDGMRSLVEGHSRQPAQVMADKGRGIHFKRKPIVERALRH 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 W + ++++ + RK+ LE +I Q +L + Sbjct: 300 WTLKAINAEMYRLAQAVLETRKRPQLEASIARQALLRTCLLSR 342 >gi|13473770|ref|NP_105338.1| DNA polymerase III subunit delta [Mesorhizobium loti MAFF303099] gi|14024521|dbj|BAB51124.1| mlr4475 [Mesorhizobium loti MAFF303099] Length = 347 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 74/344 (21%), Positives = 165/344 (47%), Gaps = 1/344 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++ + + + + YG D+GL+ E F + + DPFS+V L Sbjct: 1 MAQKKAFE-VDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ ++ +E + +FS ++++ + N + +K + + ++ + + + II+I++ + Sbjct: 60 SEVDRDEGRLLDEARTVPMFSDRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR + E + +A+ CY D + +I++ L S++ EA+Q L NLGGD Sbjct: 120 LKKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR E++KL Y I + V+ + D ++ ++A ++GK+ + Sbjct: 180 RLASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRH 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 S P +L +++ Q ++ + + + ++ + +R +++++L Sbjct: 240 CQSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALER 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W+ + + L ++ + RK+ L + + Q +L IA + + Sbjct: 300 WSSDALSRALTRLQTAVLQTRKRPDLSEALARQALLGIAVESAR 343 >gi|227823851|ref|YP_002827824.1| DNA polymerase III subunit delta [Sinorhizobium fredii NGR234] gi|227342853|gb|ACP27071.1| DNA polymerase III, delta subunit protein [Sinorhizobium fredii NGR234] Length = 343 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 183/345 (53%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ ++SH+F ++ +F+ YG D+GL+ E Q + DPF+LV L+A Sbjct: 1 MSEVKSHEF-DGFLNRGASNYRLFLLYGPDRGLVSERAAQLAAGCGVALDDPFALVKLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+Q+ +E+N+ LF +K++ I ++EK + + L+ + +II++ + Sbjct: 60 SELQQ-AGRVLDEVNAIGLFGGEKLVWIRGAASEKAIAEALQILADTPPTGSTLIIEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRKI E +V +I+CY D+ L LI++ L I A++ LL LGGD Sbjct: 119 LKKGAALRKIGETSRAVASIACYSDDARSLQALIDKELAEAGLRIGPAARERLLEALGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASRNEL+KL+ YC +I E+ V I+ D + +++ ++A ++G + + Sbjct: 179 RMASRNELRKLALYCRGKDMIDEEDVLAIVGDASAISVDDAVDAVLKGDVDALLHAMKKI 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +SK P +L L++FQ L+ + + S +++ + + ++ I++ +L+ Sbjct: 239 TSSKTPPFLVLQACLRQFQQLDVMRAEMDTSRQPANQVVASLGRGLHFRRKPIVEAALKH 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W +R L ++ I+ +R ++ LE +++ Q +L IA + + Sbjct: 299 WTAPAIRRELSRLQATIYQSRARQSLEDSLVLQNLLAIAIQSARR 343 >gi|15967086|ref|NP_387439.1| DNA polymerase III subunit delta [Sinorhizobium meliloti 1021] gi|307302548|ref|ZP_07582305.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C] gi|307316121|ref|ZP_07595565.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83] gi|15076359|emb|CAC47912.1| Putative DNA polymerase III, delta subunit [Sinorhizobium meliloti 1021] gi|306897961|gb|EFN28703.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83] gi|306903218|gb|EFN33808.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C] Length = 343 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 179/345 (51%), Gaps = 2/345 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ ++SH+F + + +F+ YG D+GL+ E ++ + I DPF++V L+A Sbjct: 1 MSEVKSHEF-DSFLQRSAAIYRLFLLYGPDRGLVSERASELAGSFGIPLDDPFAVVKLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +Q + +E+N+ LF K++ + S EK + + L+ + +I+++ + Sbjct: 60 ATLQG-AGSVLDEVNAIGLFGGDKLVWVRGASAEKALTEALQILAADPPAGARLIVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK+ E SV +I+CY D+ L L++ L I A++ L+ LGGD Sbjct: 119 LKKGAALRKVGETSRSVASIACYSDDIRGLQALVDTELSEAGLRIGPAARERLVEALGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASRNEL+KL+ YC ++ E V I+ D + +++ ++A ++G + Sbjct: 179 RMASRNELRKLALYCRGKDMVDEDDVLGIVGDASAISVDDAVDAVLKGDADALLHAMKKI 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 SK P +L L++FQ L+ + + S S +++ + + ++ +++ +L+ Sbjct: 239 TTSKTPPFLVLQACLRQFQQLDVMRAEMDASRQSAGQVVASLGRGLHFRRKPVVEAALKH 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 W +R L ++ I+ +R ++ LE++++ Q +L I + + Sbjct: 299 WTGPAIRRELGRLQATIYQSRSRQSLEESLVIQNLLAITIQSARR 343 >gi|319780619|ref|YP_004140095.1| DNA polymerase III, subunit delta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166507|gb|ADV10045.1| DNA polymerase III, delta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 347 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 162/344 (47%), Gaps = 1/344 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++++ + + + YG D+GL+ E F + DPFS+V L Sbjct: 1 MAQKKAYE-VDGWLAKPDQRISIVLLYGPDRGLVSERAKAFAGKTGLPLDDPFSVVRLEG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ ++ +E + +FS ++++ + N S +K + D ++ + + + II+I++ + Sbjct: 60 SEVDRDEGRLLDEARTVPMFSDRRLLWVRNASGQKALADDVKALTAEPARDAIILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR I E + +A+ CY D + +I+ L S++ EA+Q L NLGGD Sbjct: 120 LKKGVGLRAIVEAADNAMALPCYADEARDIDTVIDGELGRAGMSMTMEARQALRRNLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR E++KL Y I + VK + D ++ ++A ++GKI + Sbjct: 180 RLASRGEIEKLVLYAHGQTEIGLEEVKAMSGDVSGASFDDAVDALLEGKIGDFDTAFTRH 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 S +L +++ Q ++ + E N + ++ + +R +++++L Sbjct: 240 CQSGGQPFLVLSSAMRQLQQIQIMRGQMESGNRNAASVVAAARPPVFFSRRKLVEKALER 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W+ + L ++ + R++ L + Q +L IA + + Sbjct: 300 WSTEALGRALTRLQTAVLQTRRRPDLSVALARQALLGIAVESSR 343 >gi|260467204|ref|ZP_05813381.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum WSM2075] gi|259029057|gb|EEW30356.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum WSM2075] Length = 348 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 76/344 (22%), Positives = 162/344 (47%), Gaps = 1/344 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++ + + + + YG D+GL+ E F + DPFS+V L Sbjct: 1 MAQKKAFE-VDSWLAKPDARISIVLLYGPDRGLVSERAKAFAAKTGLPLDDPFSVVRLEG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ ++ +E + +FS ++++ + N S +K + D ++ + + + II+I++ + Sbjct: 60 SEVDRDEGRLLDEARTVPMFSDRRLLWVRNASGQKALADDVKALAAEPARDAIILIEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR + E +A+ CY D + +I++ L S++ EA+Q L NLGGD Sbjct: 120 LKKGVGLRAVVEAADIAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGD 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR E++KL Y I + V+ + D ++ ++A ++GK+ + Sbjct: 180 RLASRGEIEKLVLYAHGQKEIGLEEVRAMSGDVSGASFDDAVDALLEGKVGDFDTAFTRH 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 S P +L +++ Q ++ + E + ++ + +R +++++L Sbjct: 240 CQSGGPPFLVLSSAMRQLQQIQVMRGQMEQGGRNAASVVAGARPPVFFSRRKLVEKALER 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W+ + + L ++ + R++ L + Q +L IA + + Sbjct: 300 WSSDALGRALTRLQTAVLQTRRRPDLSAALARQALLGIAVESAR 343 >gi|254501308|ref|ZP_05113459.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11] gi|222437379|gb|EEE44058.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11] Length = 346 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 163/338 (48%), Gaps = 3/338 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+T+++ + I + + V + +G D GL+ E ++ S DPF+L+ ++A Sbjct: 1 MSTLKAAE-IDRFVASPPDGGGVVLVFGPDTGLVSERASRLVAKASEGDSDPFNLIKIDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ + S +E+ + LF ++I+ +++ K ++ ++ ++ + ++++++ + Sbjct: 60 SELSSDSSRLIDEVLTVPLFGGRRIVWVKDAGG-KNLVPSVDPVLKLDDWQTLVVLEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRK+ E +A+ CY DN + LI+E +IS+EA+ L + LGGD Sbjct: 119 IKKGVGLRKLIEPHKKAVALPCYADNDRGIDHLIDEETREAGLTISREARAALHSLLGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL Y ++ I + V+ II D E+I+A G + + Sbjct: 179 RMASRGELKKLCLYAMQKERIDTEDVEAIIGDASAFETSELIDAAAGGDLSTLDHGLERL 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + + + L+ FQ L ++ I + S ++++ I ++ + LRI Sbjct: 239 TDAGSKASVIANQALKHFQSLHRMRIEIDA-GKSAQQVVDGQRPPIFFSRKPKFSQQLRI 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 W + + + ++R L ++ + +L + Sbjct: 298 WTIKDLERAMGILSEATRVSRLNDNLGVPVLSEALLTV 335 >gi|118591436|ref|ZP_01548834.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614] gi|118436108|gb|EAV42751.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614] Length = 346 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 160/338 (47%), Gaps = 3/338 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + I + N + V + +G D GL+ E + S DPF+LV L+A Sbjct: 1 MTVLKAAE-IDRFVANPPEAGGVVLIFGPDTGLVSERAARLVNKASEGESDPFNLVKLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + + +E+ + LF ++I+ +++ S + + +E ++ ++ +++++ + Sbjct: 60 SDLGSDPNRLIDEVLTVPLFGGRRIVWVKDAS-SRNLNPAVEPVLKQDDWQTLVVLEGGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKK LRK+ E +A+ CY DN + LI+E S+++EA+ L + LGGD Sbjct: 119 IKKGVGLRKLIEPHKRAVALPCYADNDRGIDQLIDEETREAGLSVTREARAALHSLLGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL Y L I V+ II D + E+I+A G + + Sbjct: 179 RMASRGELKKLCLYALNKGRIDSDDVEAIIGDASAFEMSELIDAAASGDLALLDHGLERL 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + + + L+ FQ L ++ I E + + ++ I ++ + LRI Sbjct: 239 AEAGSKASVIANQTLKHFQHLHRMRIDIE-QGKNAQAVVDGQRPPIFFSRKPRFTQQLRI 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 W+ + + + ++R L ++ + +L + Sbjct: 298 WSLTDLERAMDILSEATRISRLNDALGVPVLSEALLKL 335 >gi|110635645|ref|YP_675853.1| DNA polymerase III subunit delta [Mesorhizobium sp. BNC1] gi|110286629|gb|ABG64688.1| DNA polymerase III, delta subunit [Chelativorans sp. BNC1] Length = 345 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 172/347 (49%), Gaps = 2/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++H + + V + YG D+GL+ E F + + DPFS+V ++A Sbjct: 1 MAQKKAHD-VDGWLARPDSTIVVVLLYGPDRGLVSERARLFAQKSGLPLDDPFSVVKIDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E +E + +F+ ++++ + + ++ + + ++ + + +++I++ + Sbjct: 60 AE-ADQPGRLLDEARTVPMFADRRLVWVRGVGSQSAIAADIAALVEEPPSDCLVLIEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK+ +LR E+ +A+ CY D+ + +I++ L + +I+ +A+ +L ANLGGD Sbjct: 119 LKKSASLRTTVERGDRAIALPCYSDDSRSIDAVIDDVLSKAKLTITLDARHLLKANLGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+A+R EL+KL+ YC +T ++ +I D + ++E ++A + G+I + L Sbjct: 179 RLATRGELEKLALYCAGASEVTADDIRALIGDVSGISVDEAVDAIMTGRIADFDHLFTRH 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +A P+ +L L+ Q L+ + E S + + +R+ ++++++ Sbjct: 239 VAGGSPAFLMLSAALRHVQGLQLMREQVEAQGKSPAAAVASARPPVFFARRSAVEQAVQR 298 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 WN+ ++ ++ I +R+ + + + Q +L +A + Sbjct: 299 WNQAMLHAAAERLQGAILKSRQHPAVAEPVSRQALLALAIEGARARR 345 >gi|254472510|ref|ZP_05085910.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062] gi|211958793|gb|EEA93993.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062] Length = 346 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 3/349 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + I + N S + + YG D GL+ E + DPFS V L+A Sbjct: 1 MVALKAAE-IDRYIANPPDSVNLILVYGPDTGLVNERAQALISKAAAENDDPFSQVKLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +I + S +E + LF ++ I + T K VL +E ++ N I+I++ + Sbjct: 60 ADIAADPSRLVDEALTIPLFGGRRTIWVRENGT-KSVLPAVEPLLKNNDFTAFIVIEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK + LRK E + +AI C+ D + L++E ISKEA+ L LG D Sbjct: 119 LKKTSGLRKKIEASKTAVAIPCFADTARDVDRLVDEETQSAGLQISKEARMALHTLLGAD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASR EL+KL Y + D I HV++II D ++E+I+A G + Sbjct: 179 RIASRGELKKLCLYAMNDNRIEVHHVEEIIGDASAFAMDELIDAAALGDTVTLDHGLERL 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 AS + L+ FQ+L + K I+ E +I I +R+ + + I Sbjct: 239 SASGTDVGVIASQALRHFQMLHLCRL-KANQRIAVEDVIGGIRPPIFWKRRSKIVRQVEI 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349 WN++ + L +++ + AR L I+ T+L IAQ A +N Sbjct: 298 WNEDFLERALIRLNDAVKEARFNANLSTAIVSHTLLAIAQVAKASNRRR 346 >gi|307943447|ref|ZP_07658791.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4] gi|307773077|gb|EFO32294.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4] Length = 347 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 155/350 (44%), Gaps = 3/350 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + + N V +G D GL+ E Q K S DPF+L ++A Sbjct: 1 MTALKASE-ADRFVANPPTGGGVIFIFGPDTGLVSERATQLVKKASEGDSDPFNLAKIDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 EI + + +E + LF ++II I+ S K + L+ ++ + +I+I+ + Sbjct: 60 SEIVSDPTRLIDEFLTIPLFGGRRIIWIKETSG-KNLSPALDPVLKLDDWPSLIVIEGGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK+ E +AI CY D + LI+E +IS+EA+ L + LGGD Sbjct: 119 VKKGVGLRKLVESHKRAVAIPCYSDGDRTIDQLIDEETRAANITISREARAALHSLLGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL Y L I + +I D E+I+A G + + Sbjct: 179 RMASRGELKKLCLYTLGKERIETDDIAAVIGDASAFETSELIDAAALGDLATLDHGLERL 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + + + L+ FQLL ++ + +++ I +R + L+I Sbjct: 239 SEAGANASVIANQALKHFQLLHRMRADVD-QGRPASQVVDGQRPPIFFARRPGIDRQLQI 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350 W + + L + ++R L ++ + +L +A+ A + + Sbjct: 298 WATKDLEKGLSILADATRISRLNDNLGVPVLSEALLTVARAAKARSTRRR 347 >gi|90421006|ref|ZP_01228910.1| putative DNA polymerase III, delta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334784|gb|EAS48560.1| putative DNA polymerase III, delta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 346 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 171/344 (49%), Gaps = 3/344 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA + + ++ S V + YG D GL+ E + + + DPF+ V L A Sbjct: 1 MAQKKPGE-VEAFLSRPDFSFPVILLYGPDPGLVSERSEKVAELSGVDRSDPFAAVTLAA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E++K+I ++E + S+F ++I + K + + + E+ K + I+I+++ + Sbjct: 60 DELEKDIGRLYDEAQTVSMFGGTRLIRVRGAGNGKSLAEAVAELSAKKLDGAIVILEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK++ LR AE+ +A+ CY D + +I+E + +I +EA+ L A LG + Sbjct: 120 LKKSSALRANAERGKFAIALPCYQDEGRAIDKMIDEEMRESGLTIGREARDELRARLGAN 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASR E++KL Y L +TE+ V+ I+ D +EE I+A G++ L D Sbjct: 180 RIASRGEIRKLCLYALGTSSVTEEDVRAIVGDVSADTLEETIDAAASGEVRRLPHLIDRL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +++ + L L+ FQ L+ + + E +++++ +++ ++ +L Sbjct: 240 VSAGTATFQLHQQLLRYFQQLQTMREMVEKGGEPVGRVVERRRP--HFRRKHAMEVALSA 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W + + L +ID I +RK+ L I QT+L +A A + Sbjct: 298 WPLDAITTILQRIDADILASRKEGGLALTITRQTLLDVAVEAAR 341 >gi|304392704|ref|ZP_07374644.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130] gi|303295334|gb|EFL89694.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130] Length = 350 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 165/349 (47%), Gaps = 3/349 (0%) Query: 1 MATIESHKFIQKSTK--NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +++ + ++ H +++ YG D GL FE ++ K+ D F+ V L Sbjct: 1 MAQLKASEADRRIAAMEKSGPDHALYLIYGPDHGLAFERASRIAKSSGADMEDAFATVRL 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 +A + + S +E ++ S+F K++I + +T K +L +E ++ + ++II++ Sbjct: 61 DADDAASDPSRLADEAHTVSMFGGKRLIWVRG-TTRKNLLKAVEPLLALPPEDAVVIIET 119 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++KK LR EK LA+ CY D + L+ + + K+I +E + L+ LG Sbjct: 120 GDLKKTAALRSRIEKSPHALAVPCYADGGAAVSQLVADMVQQAGKTIDRETARALVDLLG 179 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 GDR+ASR E+ KL Y ED IT HV I+ D L I+ +++A G + Sbjct: 180 GDRLASRGEIDKLLLYTGEDREITMDHVSTIVGDAASLAIDSVVDAAATGDMAKMEKTTK 239 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 LA +++ L+ FQ+L S II I +++ + +L Sbjct: 240 RLLAQGTAPFLIINACLRHFQMLHMARARMASSRQDAGSIIGGLRPPINFQRKDAVVRAL 299 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 R+W+ + +T ++D + R LE+ ++ +L I + A + + Sbjct: 300 RLWSGPDLEKTSRRLDAVLLECRSNAALEQPLLMTMLLAITRQAQRLSR 348 >gi|114705822|ref|ZP_01438725.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506] gi|114538668|gb|EAU41789.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506] Length = 345 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 3/347 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++ + + S+ V + YG D GL+ E + I DPF+ V L+A Sbjct: 1 MAQKKAGE-VDAFLSRPDFSYPVILLYGPDPGLVSERAATIAGHSGIDPSDPFASVSLSA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E++K+I ++E + SLF ++I + T K + + + + K + I+I+++ + Sbjct: 60 DELEKDIGRLYDEALTVSLFGGTRLIRVRGAGTGKVLSEAVATLSEKKLEGAILIVEAGD 119 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +K+N LR E+ +A+ CY D L +I+E I +E ++ L + LG + Sbjct: 120 LKRNAALRLSVERAKFAIALPCYQDEGRALDRMIDEEFSRAGLQIDREGREELKSRLGAN 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR E++KL Y +T V I+ D ++E I+ATI G + L + Sbjct: 180 RMASRGEVEKLCVYAYGTERVTADDVAAIVGDVSADAVDEAIDATISGAVKKLPALIERL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + P L L+ Q L + I E +++++ ++ L+ +L Sbjct: 240 TDAGTPIFQLQQNLLRTIQQLTAMREIVERQGEPVSRVVERRRP--HFKRKAALETALAS 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 W + + T +I+ I +RK+ + I Q +L IA A KN Sbjct: 298 WPLDALARTARRIETDILRSRKENQMALTITRQMMLSIAVEAAKNRR 344 >gi|328541705|ref|YP_004301814.1| DNA polymerase III, delta subunit [polymorphum gilvum SL003B-26A1] gi|326411457|gb|ADZ68520.1| DNA polymerase III, delta subunit [Polymorphum gilvum SL003B-26A1] Length = 347 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 73/350 (20%), Positives = 154/350 (44%), Gaps = 3/350 (0%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + I++ + + + YG D GL+ E ++ S DPFSL L+A Sbjct: 1 MVALKATE-IERFVARPPAAAAIILVYGPDTGLVSERAQALVESASDGSDDPFSLARLDA 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + +E + LF +++I + + + ++ + ++ C ++I++ + Sbjct: 60 ADLASDPDRLIDEALTVPLFGGRRVIWVRDAGG-RNLVPAVAPLLKLADCPAFVVIEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LRK+ E +A+ CY D + LI+E + +IS+EA+ L LG D Sbjct: 119 LKKGTGLRKLFEADRRAVALPCYADTGRDIDYLIDEETRLAGLTISREARAALHGLLGAD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR EL+KL Y I + II D + E+I+A G + + Sbjct: 179 RMASRGELRKLCLYAHGRQRIDTDDIAAIIGDASAFEMSELIDAAAGGDLAALDHGLERL 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + + L FQ L ++ + +I+ + ++ L +++ Sbjct: 239 EAEGGNASVIAGQALVHFQGLHRMRAEFDA-GTPAAQIVDAARPPVFFKRKAALARQIQL 297 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350 W+ + + + ++ + AR + ++ + +L +A+ A + + Sbjct: 298 WSAADLDKAMERLAEAMRTARLNDRIGMPVLSEALLTLARVARARGSARR 347 >gi|218463266|ref|ZP_03503357.1| DNA polymerase III subunit delta [Rhizobium etli Kim 5] Length = 300 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 157/297 (52%) Query: 48 TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK 107 +DPFSL L+ ++QK+ +E S LF +K+I I + EK + D L + K Sbjct: 1 ALNDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLADSLAHLAEK 60 Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 + +I+++ ++KK + LRK AE +V+ + Y D+ L LI+ L + I+ Sbjct: 61 PLEATYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITP 120 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 A+Q L+A +GGDRIASRNE++KL+ YC + E HV +II D +++ ++A + Sbjct: 121 AARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASATSVDDAVDAILG 180 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 G + + +SK +L L++FQLL+ + E + +++ +++ Sbjct: 181 GDLNGFLHAMQKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQVMHTMGRHLH 240 Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 ++ IL+++LR W+ + +++ I +R+++ LE ++ QT+L + + Sbjct: 241 FRRKPILEQALRQWSAESIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 297 >gi|154245395|ref|YP_001416353.1| DNA polymerase III subunit delta [Xanthobacter autotrophicus Py2] gi|154159480|gb|ABS66696.1| DNA polymerase III, delta subunit [Xanthobacter autotrophicus Py2] Length = 342 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 159/325 (48%), Gaps = 4/325 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +G D GL+ E + HDPF+LV L +I + +E ++ LF Sbjct: 22 VVLIFGPDTGLVHERAQGLVRRAVPDAHDPFALVRLEGDDISSDPRRLIDETSTIGLFGG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++ + + + ++ L+ ++ C+ ++++++ ++KK LR + E + LAI+C Sbjct: 82 ERVVWVR--AGSRNIVPALQPVLAGR-CDALVVVEAGDLKKGAPLRALCENAPNALAIAC 138 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y D+ L L++ + +I ++A+ +L++ +GGDR+ASR E+ KL Y ++ Sbjct: 139 YADSDRDLSRLVDAMMAEAGLTIDRDARDLLVSLIGGDRLASRGEIAKLILYAQGQQRVS 198 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ I+ D L +++++++ + G+ A+ + + A+L L+ L Sbjct: 199 LEDVRTIVGDASALALDDVVDSALAGETREALAALAKAMGAATRPDAVLGSLLRALTALH 258 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + S ++++ + ++ ++++LR + + + L +D + AR+ Sbjct: 259 PMTLAV-AGGASPDQVVGSARPPVHFSRKAKMEKALRALDPDRCLKALLAVDDAVLAARR 317 Query: 323 KKYLEKNIIFQTILYIAQTACKNNN 347 L I + +L +AQ A + Sbjct: 318 NAPLAPAICERVVLQVAQQAGRGRR 342 >gi|148251787|ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizobium sp. BTAi1] gi|146403960|gb|ABQ32466.1| DNA polymerase III, delta subunit [Bradyrhizobium sp. BTAi1] Length = 342 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 7/340 (2%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F+ + + + + YG D GL+ E + + DPFS+V L+ E+ Sbjct: 10 DAFLGRPDP----ARPLILLYGPDTGLVRERADTLMASAVDNPDDPFSVVKLDGDELAAE 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 S +E + LF ++ I + + + +E + + + I+I++ +I+ ++ Sbjct: 66 PSRLVDEAMTVPLFGGRRAIRVR--AGSRNFASGVETLSQMTVRDCRIVIEAGDIRPDSP 123 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 LRKI EK T+ AI CYPD + L LI+E L + I+ +A+ L+A LGGDR ASRN Sbjct: 124 LRKICEKATTAAAIGCYPDTERDLARLIDEELRVAALRIAPDARASLMALLGGDRQASRN 183 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL+KL+ + + +T HV ++ D + ++ I++ GK + + Sbjct: 184 ELRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVETEFGKAMIAGTY 243 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ + L K + S I++ + ++ + +LR ++ + Sbjct: 244 PGVIISAAQRHAAWLHKSALAV-ASGTPVSSILEGGFPRLHFSRKPSAETALRNFSPARL 302 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + ++ RK+ L I +T+L IA A + Sbjct: 303 LPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVNARRKG 342 >gi|158422193|ref|YP_001523485.1| DNA polymerase III subunit delta [Azorhizobium caulinodans ORS 571] gi|158329082|dbj|BAF86567.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 337 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 156/339 (46%), Gaps = 5/339 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M + + + H V + +G D GL+ E K + DPF++V L Sbjct: 1 MVAVRAGD-ADTALARRDPRHAVVLIFGPDMGLVRERAAGLVKRVVPDVADPFAVVRLEG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ + +E + LF ++++ + + + + LE ++ + ++++++ + Sbjct: 60 DELSGDPQRLIDETQTVGLFGGERVVWVR--AGSRNFVPALEPVLEVG-GSTLVVVEAGD 116 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK LR + E LAI CY D L L++ L +I ++AK++L++ +GGD Sbjct: 117 LKKGAPLRTLCEASPKALAIPCYADGDRDLGKLVDTMLSEAGLAIDRDAKELLVSLIGGD 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R+ASR E+ KL+ Y +T + V+ I+ D L +++++++T+ G+ A Sbjct: 177 RLASRGEIAKLALYAQGQGRVTLEDVRVIVGDASALALDDVVDSTLAGQAVEATAALAKA 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + A+L L+ L ++ + + +++I + + ++ L+ +LR Sbjct: 237 WGAATRPDAVLGALLRALSSLHQMALQVQA-GTPADRVIDQARPMVHFSRKPKLERALRS 295 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 N + +D + AR+ + + I + +L ++ Sbjct: 296 LNAERCLRAILLVDEAVLAARRNAGMAQAITERVVLQLS 334 >gi|146337358|ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizobium sp. ORS278] gi|146190164|emb|CAL74156.1| conserved hypothetical protein; putative DNA polymerase III, delta subunit [Bradyrhizobium sp. ORS278] Length = 342 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 152/346 (43%), Gaps = 4/346 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M + + I + + + YG D GL+ E + DPFS+V L+ Sbjct: 1 MVALRG-RDIDAFLAKPDAARPLILLYGPDAGLVRERAEALIASAVDNPDDPFSVVRLDG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E+ S +E + LF ++ I + + + +E + N+ + I+I++ + Sbjct: 60 DELAAEPSRLVDEAMTVPLFGGRRAIRVR--AGSRIFASGVETLSQMNVRDCRIVIEAGD 117 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 I+ ++ LRKI EK + +AI CYPD + L LI++ L ++ +A+ L+A LGGD Sbjct: 118 IRPDSPLRKICEKAATAVAIGCYPDTERDLARLIDDELRTANLRMAPDARSYLMALLGGD 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R ASRNE++KL+ + + +T HV ++ D + ++ I++ GK Sbjct: 178 RQASRNEIRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVETEFGKA 237 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + ++ + L K + S I++ + ++ + +LR Sbjct: 238 MIAGTYPGVIISAAQRHAAWLHKSALAV-ASGAPVSSILEGGFPRLHFSRKPSAEVALRN 296 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 ++ + + ++ RK+ L I +T+L IA A + Sbjct: 297 FSPARLLPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVAARRKG 342 >gi|90421810|ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB18] gi|90103824|gb|ABD85861.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisB18] Length = 342 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 146/342 (42%), Gaps = 7/342 (2%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F+ + + + YG D GL+ E + DPFS V L+ E+ Sbjct: 8 EVDSFLARPDSG----RPIILLYGPDAGLVRERAEALIASAVDDPSDPFSTVRLDGDELA 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 S +E + +F ++ I + + K + +E + + + + I+I++ ++K + Sbjct: 64 AEPSRLVDEAMTIPMFGGRRAIRVR--AGSKNFVSGVETLALSALKDCRIVIEAGDLKPD 121 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LRK E+ + +AI CY D + L L+++ I+ + + +L++ LGGDR AS Sbjct: 122 AALRKACERAKTAVAIGCYTDGERDLAKLVDDEFRNANLRIAPDVRALLVSLLGGDRQAS 181 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 RNE++KL Y +T V ++ D L ++ +I+ GK + + Sbjct: 182 RNEVRKLVLYTHGQSEVTLDDVMAVVADASELKLDPVIDGAFAGKPSLVETEFTKAMNAG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 ++ + L+ K + + + S ++ + ++ I++ LR + Sbjct: 242 SNPGTIMMAAQRHAALMHKAALAVDAGS-SESSAVEGGFPRLHFSRKAIVEAGLRNFTAQ 300 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ + RK+ L I + +L IA A + Sbjct: 301 RLLAIIDQLGNAALEMRKQSALAPVIAQRALLAIAVNARRRG 342 >gi|86747513|ref|YP_484009.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris HaA2] gi|86570541|gb|ABD05098.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris HaA2] Length = 342 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 7/340 (2%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + F+ + + + +G D GL+ E + + +DPF+LV L+ E+ Sbjct: 9 ATSFLARPDPG----RPIILLFGPDAGLVRERADALIASALDDPNDPFALVRLDGDELAA 64 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 S +E NS +F ++ I I + + + +E ++ I+I++ +IK +N Sbjct: 65 EPSRLVDEANSIPMFGGRRAIRIR--AGSRSFVAGVETLVASPPKECRIVIEAGDIKPDN 122 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 LRK EK S +AI CYPD + L LI++ L Q I ++A+ +L+ LGGDR ASR Sbjct: 123 ALRKACEKAASAVAIGCYPDAEADLAKLIDDELRAAQLQIGRDARGVLMTLLGGDRQASR 182 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE++KL+ Y IT V + D L ++ I++A GK + + Sbjct: 183 NEVRKLALYAHGQGEITLDDVIACVSDASDLKLDVIVDAAFSGKPQVVESEFAKAMVAGT 242 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 ++ + L K + + + + ++ + +LR + Sbjct: 243 YPGQIILAAQRHAAFLHKTSLAVDA-GTPAATALDSGFPRLHFSRKAASETALRNLGPSR 301 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ R++ L I +T+L IA +A + Sbjct: 302 LAQIIDQLATAALDTRRQATLGAAIAQRTLLSIAVSARRR 341 >gi|192288723|ref|YP_001989328.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris TIE-1] gi|192282472|gb|ACE98852.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris TIE-1] Length = 343 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 8/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ F+ + + + YG D GL+ E + DPF+LV L+ E+ Sbjct: 7 KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + +F ++ I + + + + +E +I I+I++ +IK Sbjct: 63 AAEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALITSPPRECRIVIEAGDIKP 120 Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +N LRK EK + +AI CYPD + + LI++ L I+K+A+ +L LGGDR Sbjct: 121 DNALRKACEKAATGAVAIGCYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQ 180 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 ASRNEL+KL+ Y +T V + D L ++ I++A GK + Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMV 240 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + ++ + L K ++ E ++ + ++ + +LR + Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLVVE-GGTPAAVVLDSGFPRLHFSRKAAAETALRNLS 299 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ R++ L I +T+L IA +A + Sbjct: 300 TTRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342 >gi|288959463|ref|YP_003449804.1| DNA polymerase III subunit delta [Azospirillum sp. B510] gi|288911771|dbj|BAI73260.1| DNA polymerase III subunit delta [Azospirillum sp. B510] Length = 341 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 135/340 (39%), Gaps = 8/340 (2%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F++ + + + YG D GL+ + K + DPF + + + Sbjct: 9 DGFLRSPDRKV----RAVLLYGPDSGLVRDRAQTLGKTVVPDLSDPFRVAEFLGRALADD 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN 125 + +E + S +++I + + E + + ++++++ ++ + Sbjct: 65 PARLADEAAAISFTGGRRLIRVRDA--EDNCAAAFTAFLESLPPGDSLVVVEAGDLSARS 122 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 LR + E + AI CY + + L +I + L + + L ANL GDR+ +R Sbjct: 123 KLRLLFEGDDAAAAIPCYVEEEASLGRVIADILQGHGLTADPDVLGFLAANLVGDRMVAR 182 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E++KL+ Y +D + + + I D+ L ++E + A +G A Sbjct: 183 GEVEKLALYMGKDKRVRLEDAQACIGDSAALSMDEPVWAAAEGDFATLDRSLARLFAEGT 242 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 +L G + FQ L+ + + + S E ++ + + L + R W+ N Sbjct: 243 SPVPILRGAQRHFQRLQLLCVQV-AAGKSPEAAVESLRPPVFFKLKTRLVKQARHWSSNH 301 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 VR+ L ++ ++ ++ + + + +A + Sbjct: 302 VRQALERLVDAEADCKRTNMPDETLCARVLFQLASLGARR 341 >gi|91974914|ref|YP_567573.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB5] gi|91681370|gb|ABE37672.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisB5] Length = 342 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 7/338 (2%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68 F+ + + + + YG D GL+ E + + +DPF+LV L+ E+ S Sbjct: 12 FLARPDA----ARPIILLYGPDSGLVRERADALIASALDDPNDPFALVRLDGDELASEPS 67 Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +E S +F ++ I + + + + +E + ++I++ +IK +N LR Sbjct: 68 RLVDEAMSIPMFGGRRAIRVR--AGSRSFVAGVETLAASPPRECRVVIEAGDIKPDNALR 125 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K EK S +AI CYPD + L LI++ L I ++A+ +L+ LGGDR ASRNE+ Sbjct: 126 KACEKAPSAVAIGCYPDAEADLARLIDDELRHSNLQIGRDARAVLMTLLGGDRQASRNEV 185 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KL+ Y IT V + D L ++ I++A GK + + Sbjct: 186 RKLALYAHGQSEITLDDVMACVSDASDLKLDVIVDAAFSGKPAVVESEFAKAMVAGTYPG 245 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + L K + E + + + ++ + +LR + + Sbjct: 246 QIILAAQRHAAFLHKTSLAVEAGAAAATALDSGF-PRLHFSRKAASETALRNLGAPRLAQ 304 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + ++ R++ L I +T+L IA +A + N Sbjct: 305 IIDQLATAALETRRQATLGAAIAQRTLLSIAVSARRRN 342 >gi|85714100|ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A] gi|85699226|gb|EAQ37094.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A] Length = 342 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 153/340 (45%), Gaps = 7/340 (2%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F+ + + + + YG D GLI E N + +DPFSLV L+ ++ Sbjct: 10 DSFLARPDP----ARPIILLYGPDAGLIRERANALMSSAVDDPNDPFSLVRLDGDDLSAE 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 S +E + LF ++ I I+ + + ++ + I + I+I++ E+K + Sbjct: 66 PSRLVDEAMTVPLFGGRRAIRIK--AGSRSFASGVDALADSTIQDCRIVIEAGELKPESP 123 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 LRK E+ + +AI+CYPD + L LI+E + + +A+ L++ LGGDR ASRN Sbjct: 124 LRKACERAKNAVAIACYPDTERDLARLIDEEFRASKLKTAPDARAALISLLGGDRQASRN 183 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL+K++ Y IT V ++ D ++ +I+A G+ + + + Sbjct: 184 ELRKIALYTHGQGEITLVDVMAVVSDASDFKLDPVIDAAFAGQPAVVEAEFAKAMIAGIY 243 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ ++ L K ++ E S S + + ++ ++ +L ++ + + Sbjct: 244 PGLVISAAQRQVAALHKAALLME-SGASPSSAAESGFPRLHFSRKAAVETALNNFSASRL 302 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ RK+ L I + ++ IA A + Sbjct: 303 IQVMDQLAGAALETRKRATLASAIAQRALMSIAVNARRRG 342 >gi|39933366|ref|NP_945642.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris CGA009] gi|39652991|emb|CAE25733.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 343 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 8/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ F+ + + + YG D GL+ E + DPF+LV L+ E+ Sbjct: 7 KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + +F ++ I + + + + +E +I I+I++ +IK Sbjct: 63 SAEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALIASPPRECRIVIEAGDIKP 120 Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +N LRK EK + +AI CYPD + + LI++ L I+K+A+ +L LGGDR Sbjct: 121 DNALRKACEKAATGAVAIGCYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQ 180 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 ASRNEL+KL+ Y +T V + D L ++ I++A GK + Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMV 240 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + ++ + L K ++ E ++ + ++ + +LR + Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLVVE-GGTPAAVVLDSGFPRLHFSRKAAAETALRNLS 299 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ R++ L I +T+L IA +A + Sbjct: 300 TTRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342 >gi|75674292|ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter winogradskyi Nb-255] gi|74419162|gb|ABA03361.1| DNA polymerase III, delta subunit [Nitrobacter winogradskyi Nb-255] Length = 342 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 150/340 (44%), Gaps = 7/340 (2%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F+ + + + + YG D GL+ E N + +DPFSLV L+ ++ Sbjct: 10 DGFLARPDP----ARPIILLYGPDAGLVRERANALISSAVEDPNDPFSLVRLDGDDLAAE 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 S +E + L ++ I I+ + + ++ + I + I+I++ E++ + Sbjct: 66 PSRLVDEAMTVPLLGGRRAIRIK--AGSRSFASGVDTLANSTIQDCRIVIEAGELRPESP 123 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 LRK E+ + +AI+CYPD + L LI+E L I+ +A+ L++ LGGDR ASRN Sbjct: 124 LRKACERAKNAVAIACYPDTERDLARLIDEELRASDLKIAPDARAALMSLLGGDRQASRN 183 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL+K++ Y IT V ++ D ++ +I+A G+ + + Sbjct: 184 ELRKIALYAHGQGEITLLDVMAVVSDASDFKLDPVIDAAFAGRPAAVEAEFAKAMVAGTY 243 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ + L K ++ E S ++ + ++ ++ +L ++ + Sbjct: 244 PGLVISAAQRFVAALHKAALLME-EGASASSATERGFPRLHFSRKASVETALSHFSAPRL 302 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ RK+ L I + ++ IA A + Sbjct: 303 VQVMDQLARAALETRKQAALASAITQRALMSIAVNARRRG 342 >gi|115522416|ref|YP_779327.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisA53] gi|115516363|gb|ABJ04347.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 149/343 (43%), Gaps = 7/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 E F+ + + + + +G+D GL+ E K+ HDPF+LV L+ +I Sbjct: 7 KEIDAFLARPDS----ARPIILLFGADSGLVRERAEALIKSAVDDPHDPFALVRLDGDDI 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + +F ++ I + + K + +E + + + ++I++ ++K Sbjct: 63 AAEPSRLVDEALTIPMFGGRRAIRVR--AGSKSFVSSVEALSESALKDCRVVIEAGDLKA 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LRK E+ + + I CY D+ + LI+E L I ++ +A+ IL A LGGDR + Sbjct: 121 DAALRKTCERAKNAVTIPCYLDDARAIGSLIDEELRIANLRLAPDARAILAALLGGDRQS 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SRNEL+KL+ Y IT V + D L ++ +++ G + + Sbjct: 181 SRNELRKLTLYAHGQSEITLDDVIACVSDASDLKLDPVVDYAFAGNPAQVETEFAKAMNA 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 +L + LL K ++ + + + ++ ++ +LR W Sbjct: 241 GTYPGLILSAAQRHAALLHKAALLVDQGTPASSAAESGF-PRLHFSRKTQVEAALRAWTA 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + ++ +RK+ L I + +L IA A + Sbjct: 300 PKLVQVIDQLATATLDSRKQAGLAAAIAQRALLSIAVNARRRG 342 >gi|316931730|ref|YP_004106712.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris DX-1] gi|315599444|gb|ADU41979.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris DX-1] Length = 343 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 8/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ F+ + + + YG D GL+ E + DPF+LV L+ E+ Sbjct: 7 KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDAKDPFALVRLDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + +F ++ I + + + + +E +I ++I++ +IK Sbjct: 63 ASEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALIASPPKECRVVIEAGDIKP 120 Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +N LRK+ EK T+ +AI CYPD + + LI++ L I K+AK +L LGGDR Sbjct: 121 DNALRKVCEKATTGAVAIGCYPDAEADIARLIDDELRGSSLQIGKDAKAVLTTLLGGDRQ 180 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 ASRNEL+KL+ Y +T V + D L ++ I++A GK + Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVIVETEFAKAMV 240 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + ++ + L K + E ++ + ++ + +LR + Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLAVE-GGTPAAMVLDSGFPRLHFSRKAAAETALRNLS 299 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ R++ L I +T+L IA +A + Sbjct: 300 ATRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342 >gi|27375740|ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA 110] gi|27348878|dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 7/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 E F+ + + + YG D GL+ E + + +DPFSLV L+ E+ Sbjct: 7 KEIDAFLARPDAG----RPIVLLYGPDAGLVRERADALIASAVDDPNDPFSLVRLDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + LF ++ I + + + ++ + + + I+I++ E++ Sbjct: 63 SAEPSRLVDEAMTVPLFGGQRAIRVR--AGSRSFASGIDTLAEMGVKDCRIVIEAGELRP 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LRK E+ + +AI CYPD + L L+++ L I I+++A+ L++ LGGDR A Sbjct: 121 ESPLRKACERAKTAVAIGCYPDTERDLAKLMDDELRIANLRIAQDARAALMSFLGGDRQA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SRNEL+KL+ Y IT + V ++ D L ++ I++ G+ + + Sbjct: 181 SRNELRKLTLYAHGKGEITLEDVMAVVADASELKLDPIVDGAFAGRPDIVETEFAKAMIA 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ ++ L K + ++ + ++ ++ +LR ++ Sbjct: 241 GTYPGVIISAAQRQAAWLHKSALAI-ADGQPASAVLDGGFPRLHFSRKPAVETALRNFSV 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ RK+ L I +T++ IA A + Sbjct: 300 ARLAAIIEQLATAALDTRKQSTLAAAIAQRTLMAIAANAKRRG 342 >gi|144900373|emb|CAM77237.1| DNA polymerase III, delta subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 341 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 143/341 (41%), Gaps = 7/341 (2%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 ++ FI+ + + +G D GL+ E + K + +DPF + L A ++ Sbjct: 7 KAEAFIRAPDP----AMRAILVFGPDNGLVRERAVKLAKTVLPDLNDPFRVAELTAAALK 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + +L ++++++ + + + + + ++++++ E+ Sbjct: 63 DDPARLADEAAAMALTGGRRVVMVRDAGD--TLSSLFQSFLDNPTGDAMVVVEAGELGPR 120 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 ++LRK+ E + +A++ Y D L +I E L + S +A L+ +LGGDR + Sbjct: 121 SSLRKLFEGAANAVALASYADEGASLQQVIAEELKVSGLSAEADAMSFLMDHLGGDRRLT 180 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R+ELQKL+ Y I+ + I DT L ++++ AT G A + D Sbjct: 181 RSELQKLALYMGGPGRISLEDAIACIGDTAALSMDDLSLATADGDHGTAQRVLDRLTREG 240 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 A+L + FQ L S ++ + + +I + + L W+ Sbjct: 241 TSPVAVLRALSRHFQRLHLAAGTM-AMGKSADQAMNALKPPVIFKAADRFRRQLSRWSAE 299 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + L ++ + I + I+ + + A ++ Sbjct: 300 RAGQALERLIEAEMDCKSTGMPATEICSRVIMTLCRAAGRS 340 >gi|23016031|ref|ZP_00055792.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum magnetotacticum MS-1] Length = 340 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 137/336 (40%), Gaps = 3/336 (0%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 I+ K + + +G D GL+ E + + +++ DPF + L ++ S Sbjct: 8 IEAFLKAPDPAMRAVLVFGPDLGLVRERVQRLIRSVVPDTSDPFRVAELTPAALKDIPSR 67 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E + +L ++++++ + + + + + + + +++I+ E+ ++LRK Sbjct: 68 LADEAAAMALGGGRRVVVLRDAGDGQSG--AVSSFLARPMGDALVVIEGGELGPRSSLRK 125 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + E + A++CY D L +I+E L +A L +LGGDR +R EL Sbjct: 126 LFEGADNAAALACYGDEGGSLAGVIQEELKSAGLMAEPDAMAYLTEHLGGDRRLTRAELG 185 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ Y + + + DT L ++++ +T G A + D L Sbjct: 186 KLALYMGGPGRVHLEDAVACVGDTAALGLDDLALSTADGDHAGAQRVLDRLLREGSQPVG 245 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L + FQ L + S ++ + + +I + + L W + + + Sbjct: 246 MLRSVARHFQRLHLAAGLM-AQGKSTDQAMAALKPPVIFKAADRFKRQLSRWPADRLGKA 304 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 L + + I + ++ IA+ A + Sbjct: 305 LDLLTEAEVDCKTTGMPAAEIASRALMMIARAAARR 340 >gi|83309128|ref|YP_419392.1| DNA polymerase III subunit delta [Magnetospirillum magneticum AMB-1] gi|82943969|dbj|BAE48833.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 340 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 138/341 (40%), Gaps = 7/341 (2%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 F++ ++ + +G D GL+ E + + +++ DPF + L ++ Sbjct: 7 RVEAFLKSPDPSI----RAVLVFGPDLGLVRERVQRLIRSVVPDASDPFRVAELTPAALK 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + S +E + +L ++ +++ + + + + + + + +++I+ E+ Sbjct: 63 EVPSRLADEAAAMALGGGRRAVVLRDAGDGQSG--AVSSFLARPMGDALVVIEGGELGPR 120 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 ++LRK+ E + A++CY D L +I+E L +A L +LGGDR + Sbjct: 121 SSLRKLFEGADNGAALACYGDEGGSLAGVIQEELKAAGLMAEPDAMAYLTEHLGGDRRLT 180 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 R EL KL+ Y ++ + DT L ++++ AT G A + D L Sbjct: 181 RAELGKLALYMGGPGRVSLDDAVACVGDTAALGLDDLALATADGDHAGAQRVLDRLLREG 240 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 +L + FQ L + S ++ + + +I + + L W + Sbjct: 241 GQPVGMLRSVARHFQRLHLAAGLM-AQGKSTDQAMSALKPPVIFKAADRFKRQLSRWPAD 299 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + L + + I + ++ IA+ A + Sbjct: 300 RLGKALDLLTEAEVDCKTTGMPAAEIASRALMMIARAAARR 340 >gi|209883519|ref|YP_002287376.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5] gi|209871715|gb|ACI91511.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5] Length = 342 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 76/343 (22%), Positives = 147/343 (42%), Gaps = 7/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 E F+ + + V + YG D GL+ E + + +DPFS+V ++ E+ Sbjct: 7 KEIDTFLARPDP----ARPVILLYGPDTGLVRERADALLSSAVADPNDPFSMVKMDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + +E + LF ++ I I + + ++ + + +I+I++ E++ Sbjct: 63 AGDPARLVDEAMTVPLFGGRRAIRIR--AGSRNFASAIDTLAGMAPKDCMIVIEAGELRP 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LRK E+ S +AI+CY D + L LI+E L +I+ +A+ L LGGDR A Sbjct: 121 DAPLRKACERSRSAVAIACYTDTERDLARLIDEELRANGTTIAADARAALTGLLGGDRQA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SRNE++KL+ Y +T V ++ D L ++ II+ G+ LA+ Sbjct: 181 SRNEIRKLALYTHGAKEVTLADVAAVVTDASALALDPIIDGAFAGRAAAVETAYAKALAA 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ + L K + E S ++ + +R ++ +LR + Sbjct: 241 GTYPGQIIASAQRHAAQLHKARLALE-EGRSEMDALESGFPRLHFSRRTHVETALRGLSS 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + R++ L I + ++ IA A Sbjct: 300 ERLLRIISLLAEAAFDMRRQADLAGTIGGRALMSIAVNARARR 342 >gi|299133189|ref|ZP_07026384.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2] gi|298593326|gb|EFI53526.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2] Length = 342 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 77/342 (22%), Positives = 148/342 (43%), Gaps = 7/342 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 E F+ + + V + YG D GL+ E + + +DPFS+V ++ E+ Sbjct: 7 KEIDSFLARPDP----ARPVILLYGPDAGLVRERADALLASAVDDPNDPFSMVKMDGDEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + S +E + LF ++ I I + + ++ + + + I+I++ E++ Sbjct: 63 AADPSRLVDEAMTVPLFGGRRAIRIR--AGSRNFASGIDTLADMSPKDCRIVIEAGELRP 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LRK E+ + +AI+CY D + L LI+E L +IS +A+ L+ LGGDR A Sbjct: 121 DAPLRKACERSRTAVAIACYADTERDLARLIDEELRPIGATISSDARAALVGLLGGDRQA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SRNE++KL+ Y +T V ++ D L ++ II+ GK +A+ Sbjct: 181 SRNEIRKLALYAHGAKEVTLADVAAVVTDASALALDPIIDGAFAGKAAVMEAAYTKAIAA 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ + L K + E S + + +R ++ +LR + Sbjct: 241 GTYPGQIIASAQRHAAQLHKARLALE-DGRSESDALDGGFPRLHFSRRTPVEAALRNLSS 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + R++ L I + ++ IA A + Sbjct: 300 ERLLRIITLLADAALEMRRQADLAATIGQRALMAIAVNARQR 341 >gi|92115732|ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14] gi|91798626|gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14] Length = 342 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 149/343 (43%), Gaps = 7/343 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 + F+ + + + YG D GL+ E + + DPFSLV L+ ++ Sbjct: 7 KDVDSFLARPDPG----RPIILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGDDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 S +E + LF ++ I ++ + + +E + I + I+I++ E++ Sbjct: 63 ATEPSRLVDEAMTVPLFGGRRAIRVK--AGTRNFAGGIETLADSAIQDCRIVIEAGELRP 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 LRK E+ + +AI+CYPD + L LI++ L + I+ +A+ L++ LGGDR A Sbjct: 121 EAPLRKACERAKNAVAIACYPDTERDLARLIDDELRLSNLKIAPDARATLMSLLGGDRQA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 SRNEL+K++ Y I V ++ D ++ I++A G+ + + Sbjct: 181 SRNELRKIALYAHGQREIALDDVMAVVSDASDFKLDPIVDAAFAGQPAVVETEFAKAMVA 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ ++ L K + E + + ++ ++ +LR ++ Sbjct: 241 GTYPGLVILAAQRQVAALHKAALAMEGGASASSAAESGF-PRLHFSRKTAVETALRNFSA 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + ++ ARK+ L I + ++ IA A + Sbjct: 300 ARLLQVMDQLAVAALEARKQTVLAPVIAQRALMSIAVNARRRG 342 >gi|209965831|ref|YP_002298746.1| DNA polymerase III subunit delta [Rhodospirillum centenum SW] gi|209959297|gb|ACI99933.1| DNA polymerase III, delta subunit, putative [Rhodospirillum centenum SW] Length = 345 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 68/346 (19%), Positives = 144/346 (41%), Gaps = 9/346 (2%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 F+++ + +FYG D GL+ E Q + + DPF + L + +I Sbjct: 6 KNVEGFLKRPLPQV----RAVLFYGPDSGLVRERAAQLCRTVVEDLSDPFRVAELKSDQI 61 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + +E+ + +L ++++ + + + ++++++ ++ K Sbjct: 62 AADPARLHDEMAAIALTGGRRLVRLRDAEDALAAALGRLLK-DLPAGDSLLVVEAGDLGK 120 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + LR +AE+ S AI+CY + + L + L +I +A+ L NL GDR+ Sbjct: 121 ASKLRALAEEADSAAAIACYVEGEEELAGTVARILGEHGLAIDPDARAWLAGNLVGDRVM 180 Query: 184 SRNELQKLSSY---CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +RNE+ KL+ Y + +T + V+ ++ D+ L +EE A G + Sbjct: 181 ARNEIDKLALYMASAPKGAKVTLEDVRAVVGDSAALELEEPALAAADGDMAAVDRSLRRL 240 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A S ALL + FQ L I + + ++ ++ + L +R Sbjct: 241 FAEGTASVALLRTAQRHFQRLH-IAVAHVARGQTPQQAVKSLRPPVFFKMEAQLTSQVRR 299 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 W L+++ L ++ ++ ++ I + +AQ A + Sbjct: 300 WTLPLLQQALTRLLEAEADCKRTNMPDETICARAFFQLAQLARRGG 345 >gi|220921034|ref|YP_002496335.1| DNA polymerase III subunit delta [Methylobacterium nodulans ORS 2060] gi|219945640|gb|ACL56032.1| DNA polymerase III, delta subunit [Methylobacterium nodulans ORS 2060] Length = 342 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 145/332 (43%), Gaps = 6/332 (1%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 + V + YG D GL+ E + ++ DPF+LV L+ + + +E Sbjct: 15 RGPDPRIAVILVYGPDTGLVAERARRLAESAVADPSDPFALVKLDGDTLAGDPGRLVDEA 74 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + LF ++ I + + +E ++ + I++++ ++ K+ LR + E+ Sbjct: 75 GTVGLFGGQRAIWVR--PGSRNYAPAVEAVLKAELAATRIVVEAGDLAKSAPLRALCERS 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 LA+ CYPD+ L +LI+ L I+++A+++ +A+LGGDR AS E++KL+ Y Sbjct: 133 QRALALPCYPDDARTLAELIDSRLQDEGLRIARDAREVFVASLGGDRRASLGEIEKLALY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V+ I D + +I+A G+ F M + +L Sbjct: 193 ARGRGEITLEDVEAIASDVSGSALNALIDAAFAGQAGETERSYRRFQTEGMDASVMLGAG 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 L+ L + + E S +++ + ++ I++ L W+ + +R + ++ Sbjct: 253 LRHVLTLLTVRL--EGDGKSPSQLVANWR-GLHFRRQKIVEIQLARWSPDGLRRAVTRLQ 309 Query: 315 HRIHLARK-KKYLEKNIIFQTILYIAQTACKN 345 + R+ +I L +A A + Sbjct: 310 EAVLACRRADADFAHSIASDVFLRLALEASRR 341 >gi|23011672|ref|ZP_00051963.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 145/348 (41%), Gaps = 6/348 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ ++ Sbjct: 1 MTAVKAGDIESLIRRGPDARIAVVLVYGPDTGLVADRATRLVRGMVSDPDDPFALIRIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DALASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CYPD++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LGRSAPLRTLCEGSARALALPCYPDDERTLADLIERTLQDDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGTVGVEDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +++ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLALRL--DNPRGSASQLVANWR-GLHFRRKALAETQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNNN 347 W+ +++ + + + R+ + L L IA A + N Sbjct: 296 WSAPALQQAVTWLQETVLACRRSEPDLAHAQALGVFLRIAVEASRRRN 343 >gi|188580906|ref|YP_001924351.1| DNA polymerase III subunit delta [Methylobacterium populi BJ001] gi|179344404|gb|ACB79816.1| DNA polymerase III, delta subunit [Methylobacterium populi BJ001] Length = 343 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 144/347 (41%), Gaps = 6/347 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ ++ Sbjct: 1 MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDTGLVADRAARLVRGMVADPDDPFALIKIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CYPD++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LARSAPLRTLCEGSAKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGSVGVEDVEAIVSDVGASVLNALIDAAFAGRAGEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +++ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQLVANWR-GLHFRRKALAETQLSR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 W+ +++ + + + R+ + L L IA A + Sbjct: 296 WSGPGLQQVVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEASRRR 342 >gi|254560707|ref|YP_003067802.1| DNA polymerase III subunit delta, holA [Methylobacterium extorquens DM4] gi|254267985|emb|CAX23853.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens DM4] Length = 343 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 6/347 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ ++ Sbjct: 1 MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CYPD++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +I+ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQIVANWR-GLHFRRKALAETQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 W+ +++ + + + R+ + L L IA A + Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342 >gi|240138145|ref|YP_002962617.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens AM1] gi|240008114|gb|ACS39340.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium extorquens AM1] Length = 343 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 6/347 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ ++ Sbjct: 1 MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CYPD++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +I+ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSANQIVANWR-GLHFRRKALAETQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 W+ +++ + + + R+ + L L IA A + Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342 >gi|163851014|ref|YP_001639057.1| DNA polymerase III subunit delta [Methylobacterium extorquens PA1] gi|163662619|gb|ABY29986.1| DNA polymerase III, delta subunit [Methylobacterium extorquens PA1] Length = 343 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 142/347 (40%), Gaps = 6/347 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ + Sbjct: 1 MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIEG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CYPD++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +I+ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQIVANWR-GLHFRRKALAETQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 W+ +++ + + + R+ + L L IA A + Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342 >gi|298293751|ref|YP_003695690.1| DNA polymerase III subunit delta [Starkeya novella DSM 506] gi|296930262|gb|ADH91071.1| DNA polymerase III, delta subunit [Starkeya novella DSM 506] Length = 340 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 156/336 (46%), Gaps = 4/336 (1%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ + + V + +G D GL+ E + + DPF LV L+ EI + Sbjct: 9 VEATLTRIDPLRPVLLLFGPDSGLVRERARAYLARAAEGSSDPFGLVRLDGDEIAGDPGR 68 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E + +LF +++I + + V+ +E ++ + I++I++ ++K+ LR Sbjct: 69 LVDEAGTVALFGGRRVISLR--VGSRNVVPAVEALLAAPPGDAIVVIEAGDLKRGQGLRA 126 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + E LAI+CY D L LI+ + SI ++A+ L+ LGGDR+ASR E+ Sbjct: 127 LCEASPRALAITCYADTDRDLTRLIDTMVTEAGLSIDRDARAELMGLLGGDRLASRGEIA 186 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y + IT +HV+ I+ D L ++EI ++ G+ M + Sbjct: 187 KLLLYAAGEPRITAEHVRAIVGDASSLALDEIADSAFAGQPTEMASAFAKASGEGMRADI 246 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L + Q L + + + +I E+ I+ I ++ +++++LR W+ + Sbjct: 247 ILGSVCRTGQALHLLRLAADAGSI--ERAIESARPAIHFRRKPLIEKALRSWSAARLEAA 304 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 L +D + AR+ L I + +L +A A + Sbjct: 305 LLALDDALLAARRNAALGPAIAERALLQVAGQARRG 340 >gi|218529841|ref|YP_002420657.1| DNA polymerase III subunit delta [Methylobacterium chloromethanicum CM4] gi|218522144|gb|ACK82729.1| DNA polymerase III, delta subunit [Methylobacterium chloromethanicum CM4] Length = 343 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 141/347 (40%), Gaps = 6/347 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + V + YG D GL+ + + + + DPF+L+ ++ Sbjct: 1 MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF + I + S + ++ ++ I++++ + Sbjct: 61 DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + ++ LR + E LA+ CY D++ L DLIE +L I ++A+ +L +LG D Sbjct: 119 LARSAPLRTLCEGSPKALALPCYTDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS +E+ KL+ Y + V+ I+ D + +I+A G+ A F Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M A+L L+ L + + + S +++ + ++ + + L Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQLVANWR-GLHFRRKALAETQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 W+ +++ + + + R+ + L L IA + Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIETARRR 342 >gi|182677221|ref|YP_001831367.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633104|gb|ACB93878.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 340 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 161/346 (46%), Gaps = 14/346 (4%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M I+SH+ F+ + T ++FL ++ +G+D GL+ E + DPF + Sbjct: 1 MVAIKSHEADRFLARPTTHVFL----YLVHGTDNGLVAERVKTIVARSVDDPKDPFQFLR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ ++ + +E ++ LF ++ ILI + K + +E I+ + II++ Sbjct: 57 LDGDDLAADPQRLADEAHTVPLFGGRRAILI--GARGKAFIQAVEPILAVPPQDCTIIVE 114 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + +KK+N LRK+ E+ + AI CYPD++ L LIE +++I +AK+ LL+ L Sbjct: 115 AGALKKDNALRKLCERDKNAAAIECYPDSQRDLQALIEAETAATRQTIRADAKEELLSLL 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G DR+ +R EL KL Y + IT HV+ I+ D L+++ INA G+ NA +A Sbjct: 175 GADRLTTRGELDKLLLYTHGEAEITLSHVEAIVADASSLFVDGAINAAFAGEATNADRIA 234 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 ++ LL L++ L + + K+ + ++ Sbjct: 235 RRVFEEAGDANMLLGMALRQALSLHRAKLDKDMGLAPRGGAPFAAS-----WRMGNAEQH 289 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 L W+ + E + + AR++ L + I + + +A A Sbjct: 290 LSRWSVERLSEASTLLGEAVRQARREPKLAEAIALRALWSVAFLAR 335 >gi|217976533|ref|YP_002360680.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2] gi|217501909|gb|ACK49318.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2] Length = 338 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 145/344 (42%), Gaps = 14/344 (4%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + E+ KF+++ ++F V++ YG D GL+ E K DPF L+ + + Sbjct: 6 SFEADKFLERPAPHIF----VYLLYGPDAGLVAERARALVKKSVDNPKDPFQLLRIGGDD 61 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + +E N+ LF ++ I IE + + + LE + III++ +K Sbjct: 62 LAADPLRLADEANTIGLFGDRRAIWIE--AQGRAFVTALEPLFAAPPQGSTIIIEAGALK 119 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K+ LR++ E+ S AI+C PD++ + LIE S+S EAK +L + LG DR+ Sbjct: 120 KDAVLRRLCEREKSAAAIACMPDSQEEIAHLIEREAAGAGLSVSPEAKTLLASLLGQDRL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A+R EL+KL Y I +HV+ I+ D L ++ ++ G A A Sbjct: 180 ATRGELEKLVLYAHGAGAIGLEHVEAIVSDASSLLLDHAVDGAFGGDFAAVEAGARRLAA 239 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + LL L+ L + + + + + +R+W Sbjct: 240 QGADVNQLLGAALRYSLGLRRARLEIDAGGGHGHGYGFG--------RSRAFDQHVRLWT 291 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + + R++ L + I + + +A A Sbjct: 292 AERLARAIDILAEAVRRTRREPKLAQPIALRALWSVASAAQARG 335 >gi|114326671|ref|YP_743828.1| DNA polymerase III subunit delta [Granulibacter bethesdensis CGDNIH1] gi|114314845|gb|ABI60905.1| DNA polymerase III, delta subunit [Granulibacter bethesdensis CGDNIH1] Length = 351 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 147/336 (43%), Gaps = 11/336 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 ++ F+++ + + + YG D GL+ E + ++ DPF ++ L A + Sbjct: 5 ARQAEAFLRQPDQAV----RAVLLYGDDHGLVRERGTSLTRLVAGQIDDPFRVIELAAEQ 60 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 NE+ SL +++I I + + + ++ ++I+++ + Sbjct: 61 AAD----LPNEMAGLSLTGGRRVIRIREAAD---IFAAPLQAGLERQGEALVILEAGTLT 113 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + LR +AEK S +I+CYPD L I++SL + SI +A + L +LG DR Sbjct: 114 PRSKLRVLAEKMASAASIACYPDEGRSLSQTIQDSLARDRVSIEADALKWLCDHLGADRA 173 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +R E+ KL+ Y +D T + I D L +E+ + A++ G I A L+ Sbjct: 174 LTRREIDKLALYVGQDGTATIEAAHACIGDLAGLSLEDALYASVIGDISGAERALSLALS 233 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 S A++ LQ Q L K+ + + + S + +++ + + + ++L +W Sbjct: 234 EGTTSIAVVRMALQHMQRLRKLRAVMQENGTSAAEAVRQAKPPVFFKRVPAFTKALTLWR 293 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 ++ + ++ ++ I Q ++ I Sbjct: 294 DEMLAAICDMLWQAEKACKQSGAPDETICRQAVMSI 329 >gi|170750489|ref|YP_001756749.1| DNA polymerase III subunit delta [Methylobacterium radiotolerans JCM 2831] gi|170657011|gb|ACB26066.1| DNA polymerase III, delta subunit [Methylobacterium radiotolerans JCM 2831] Length = 345 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 139/324 (42%), Gaps = 7/324 (2%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + + V + +G D GL+ E + ++ DPF+LV ++ Sbjct: 1 MTAVKAGEIEGLIRRGPDPRIPVILVFGPDTGLVTERARKLAEDFVDDPADPFALVRIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF ++ I + + +E ++ + + I++++ + Sbjct: 61 DALAADPGRLCDEAGTMGLFGGRRSIWVR--PGTRNYAPAVEAVLGATVADARIVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + KNN LR + E+ LAI CY D++ L DLIE +L I + A+++L +LGGD Sbjct: 119 LAKNNPLRALCERSPKALAIPCYADDERTLSDLIERTLQERGLRIDRAAREVLARSLGGD 178 Query: 181 RIASRNELQKLSSYCLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 R AS E++KL+ Y + +T +HV+ + D + +I+A G+ Sbjct: 179 RRASLMEIEKLALYAAGEGDKTVTLEHVEAVTSDVAASVLNTLIDAAFDGRREAVERDYR 238 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 F + +L L+ L + + + T + + ++ ++ L Sbjct: 239 RFRHEGLDPGVVLGSALRHALTLLTTRLDNPEKTPAM---MAATWRGLHFKRKASIEGQL 295 Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322 W +R+ + + + R+ Sbjct: 296 GAWPPGTLRQAVAALQEAVLACRR 319 >gi|170739701|ref|YP_001768356.1| DNA polymerase III subunit delta [Methylobacterium sp. 4-46] gi|168193975|gb|ACA15922.1| DNA polymerase III, delta subunit [Methylobacterium sp. 4-46] Length = 342 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 145/346 (41%), Gaps = 6/346 (1%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I + V + YG D GL+ E + DPF+LV ++ Sbjct: 1 MTAIRPGDVEGLLRRGPDPRVAVILVYGPDTGLVAERARSLAEGAVADPSDPFALVKIDG 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + +E + LF ++ I + + + +E ++ + +++++ + Sbjct: 61 DVLAGDPGRLLDEAGTVGLFGGQRAIWVR--PGSRPIAPAVEALLKAELPAARVVVEAGD 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + K+ LR + E+ LA+ CYPD+ L DLI+ L I+++A++ L A+LGGD Sbjct: 119 LAKSAPLRVLCERSPRALALPCYPDDARTLADLIDARLQAEGLRIARDARETLAASLGGD 178 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R AS E++KL+ Y I+ + V+ + D + +I+A G+ A F Sbjct: 179 RRASLGEIEKLALYARGQREISLEDVEAVASDVSGSVLNALIDAAFAGQAGEAERSYRRF 238 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 M + +L L+ L + + S +I+ + ++ I++ L Sbjct: 239 RVEGMDASVMLGAALRH--ALALLAARLDGQGQSPGQIVASWR-GLHFRRQRIVEVQLAR 295 Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKN 345 W+ +R + ++ + R+ + + ++ IA A + Sbjct: 296 WSPEALRRAVARLQEAVLACRRAEAEFAHALASDVLVRIALEAGRR 341 >gi|258543601|ref|YP_003189034.1| DNA polymerase III subunit delta [Acetobacter pasteurianus IFO 3283-01] gi|256634679|dbj|BAI00655.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256637735|dbj|BAI03704.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256640789|dbj|BAI06751.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643844|dbj|BAI09799.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646899|dbj|BAI12847.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649952|dbj|BAI15893.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652942|dbj|BAI18876.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655996|dbj|BAI21923.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 337 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 134/328 (40%), Gaps = 8/328 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + +G D GLI E I+ + DPF + VL+ ++ E + SL Sbjct: 17 AWRILLLHGEDTGLIKERAQNAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSL 72 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + S +L LE + +N + ++I+++ + + LR EK + + Sbjct: 73 MGGRRVVRVRDASD--ALLKPLEAFLAQN-SDTLVILEAPGLSSRSKLRGFLEKHPNCAS 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I CYP+ +L I L I +A L + LG DR A+R+E++KL Y + Sbjct: 130 IGCYPEEGRNLESSITRMLAEHNVRIDSDALHWLTSRLGADRAAARSEIEKLCLYAGDTG 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V+ I D + +E+ A +G A + LA A+ FL Sbjct: 190 NLTLDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLH 249 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L ++ + +S + ++ + + +L +W+ + + + + + Sbjct: 250 RLRRVRAAM-AAGVSRSEAVKALRPPVFFKRTASFNRALELWSLPALTKAVEETQALEYA 308 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347 ++ + + + + + A Sbjct: 309 CKQTGSPDALLCRRYVSTLTARAAMQAR 336 >gi|83594958|ref|YP_428710.1| DNA polymerase III subunit delta [Rhodospirillum rubrum ATCC 11170] gi|83577872|gb|ABC24423.1| DNA polymerase III, delta subunit [Rhodospirillum rubrum ATCC 11170] Length = 342 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 151/341 (44%), Gaps = 7/341 (2%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F++K + + YG D+GL+ E + Q + + DPF + L+ +++ + Sbjct: 9 DGFLRKPDPKI----RCVLVYGPDEGLVRERLEQLARTVVADPKDPFRITDLSGDDLRAD 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + +E + + ++++ + ++ + L+ + + +++++ ++ + Sbjct: 65 PARLADEAAALAFGGGRRLVRLRQMTDQHA--PRLKAFVEAPVGEALVLVQGGDLTARSA 122 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 LRK+ E ++ A+ CY D L L+ +L + + + E L+ANLGGDR SR+ Sbjct: 123 LRKLFEGASAAAALPCYADEGRSLETLVRATLAEARLAAAPEVIDYLVANLGGDRGVSRS 182 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL KL +YC + ++ + D+ + ++ + NA +G A+ D M Sbjct: 183 ELAKLVTYCGKATSVSLDDALACVGDSAQIGLDMLTNAVAEGDSATALRALDRLGQEGMA 242 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + ALL G + F L + + S ++ + + ++ + ++ W+ + Sbjct: 243 TVALLRGLTRHFTRLHLVAGLI-AGGTSVDQALAALKPPVMFKLAPRFRSQVQRWSAERL 301 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + L + A+ E+ ++ + +L +A+ A + Sbjct: 302 AQALDLLLDAEIDAKSSGLPERALVERLLLRLARGAKTASR 342 >gi|329113641|ref|ZP_08242419.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001] gi|326697048|gb|EGE48711.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001] Length = 337 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 136/328 (41%), Gaps = 8/328 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + +G D GLI E I+ + DPF + VL+ ++ E + SL Sbjct: 17 AWRILLLHGEDTGLIKERAQDAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSL 72 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + S VL LE + ++ + +II+++ + + LR EK + + Sbjct: 73 MGGRRVVRVRDASD--TVLKPLEAFLAQS-SDTLIILEAPGLSSRSKLRNFLEKHANCAS 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I CYP+ +L I L + I+ +A L + LG DR A+R+E++KL Y + Sbjct: 130 IGCYPEEGRNLESSITHMLTEHKVRIASDALHWLTSRLGADRAAARSEIEKLCLYAGDSG 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V+ I D + +E+ A +G A + LA A+ FL Sbjct: 190 SLTLDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLH 249 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L ++ + +S ++ + + ++L +W+ + + + + + Sbjct: 250 RLRRVRAAM-AAGVSRSDAVKALRPPVFFKRTASFNKALELWSLPALTKAVEETQALEYA 308 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347 ++ + + + + + A Sbjct: 309 CKQTGSPDALLCRRYVSTLTARAAMQAR 336 >gi|330993122|ref|ZP_08317060.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1] gi|329759892|gb|EGG76398.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1] Length = 340 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 132/329 (40%), Gaps = 11/329 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +G D GLI E K I HDPF + +L + + + E+ + SL Sbjct: 19 RVIMLHGDDVGLIRERATTAAKAICPDLHDPFRVAMLG----RADHARLEEEMTALSLTG 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++I + T++ +L+ L+ + + + ++I+++ + + LR EK I Sbjct: 75 GRRVIWLRE-GTDEGLLEALKRGLAQQ-SDALVIVEAPGLDSRSRLRGFVEKDAQCALIG 132 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CYP+ L I + L I +A ++ G DR A+R+E++KL+ + + Sbjct: 133 CYPEEGRALEGAIRQMLAAQDVGIDPDALGWMVERAGPDRAATRSEVEKLALFAGRGGRL 192 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQL 260 + V+ + D + +E+ A + G+ A A L L + Sbjct: 193 GLEDVRACVGDAAGVSMEDAAFAAMAGQRREADAAAQRALTVDGSSPSNLTRALMSHIHR 252 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + +S +++ + + + + ++L +W + + Sbjct: 253 LRRARLAMDA-GMSRADAMRQLQPPVFFKRTDSFGQALGLWPADALLRAAQDTQTLELAC 311 Query: 321 RKKKYLEKNIIFQ---TILYIAQTACKNN 346 R+ + + + + +AQ A + Sbjct: 312 RQTGSPDIVLCLRHVARLCGLAQQARRRR 340 >gi|163796493|ref|ZP_02190453.1| DNA polymerase III [alpha proteobacterium BAL199] gi|159178343|gb|EDP62887.1| DNA polymerase III [alpha proteobacterium BAL199] Length = 347 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 137/335 (40%), Gaps = 8/335 (2%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F+++ L + YG D G + E + +++ DPF++ VL+ E + Sbjct: 7 ELEGFVRQPPAGL----RGVLIYGPDGGKVRETAERIGRSVVTDLSDPFNVTVLSGDEAE 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + +E + SL ++++ + + + + L + +++++++++K Sbjct: 63 ADPARVADEAAARSLMGGRRLVRVRDA--RDRTAEALANAFSGPDTDTLVVVEASDLKAG 120 Query: 125 NTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 LRK+ E K + + AI+CY D+ L ++ +S ++ +A Q LL LG DR+A Sbjct: 121 TGLRKLFEDKRSDLAAIACYADDARDLARVLRDSFEAAGVRVASDANQFLLERLGSDRMA 180 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 +R EL KL+ + ++ + + + D L I+ +I A G+ + D Sbjct: 181 TRTELDKLALMVGQGGVLDLETAMEAVGDGAALEIDSLITAAADGRPEGIVSGLDRAFRQ 240 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 +L FQ L + + + ++ + + + W Sbjct: 241 GESPIRVLRTAQGYFQRLH-LAASRAAEGRNPADAVKSLRPPVFFKAVEAMTRQVARWTP 299 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + L ++ + + ++ Q ++ + Sbjct: 300 TALAGALARLGQAEIRCKTTGFPDEAECGQALIDV 334 >gi|162148178|ref|YP_001602639.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus PAl 5] gi|209542817|ref|YP_002275046.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus PAl 5] gi|161786755|emb|CAP56338.1| putative DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209530494|gb|ACI50431.1| DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 337 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 123/328 (37%), Gaps = 8/328 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + V + +G D GLI E I+ DPF + VL+ + EI + SL Sbjct: 17 ALRVILLHGDDSGLIRERARLAATAIAPNLDDPFRVAVLD----RDAADRLDEEIFALSL 72 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + L + + + ++I+++ + LR +AE A Sbjct: 73 AGGRRVVWVRDGGDS---LTAPLKASLARPSDTLVIVEAPGLASRARLRALAEAQADCAA 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+CYP+ L I + L I +A LG +R A+R E++KL+ Y Sbjct: 130 IACYPEEGRALEASIRQMLAEEDIRIDPDALSWFAGLLGPNRAATRGEVEKLALYAGRGG 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 ++ V+ I D + +E+ A G A + + LA A+ L Sbjct: 190 QLSLDDVRMCIGDAAGVSLEDAAFAATAGDRAGADIAIERALAEGTSPIAVARSLLSHLH 249 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + I + S ++ + + + ++L +W + E + Sbjct: 250 RLRRARIAMD-GGQSRADAMRGLRPPVFFKRTDAFGQALSLWTAARLMEAAEQTQRLELE 308 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347 ++ + + + I +A TA Sbjct: 309 CKQTGAPDLALCRRHIARLAATAMAGRR 336 >gi|296114816|ref|ZP_06833465.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC 23769] gi|295978630|gb|EFG85359.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC 23769] Length = 339 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 129/333 (38%), Gaps = 9/333 (2%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71 ST + V + +G D GLI E Q + I+ DPF + +L + Sbjct: 9 ASTLRDPGAWRVILLHGEDTGLIRERATQAAQVITPELDDPFRVAILG----RDAHDRMA 64 Query: 72 NEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 E + SL ++++ + + ++E + + + ++I+++ ++ + LR + Sbjct: 65 EECAALSLVGGRRVVWVREA--RDGLTGPVKECLAADT-DTLLIMEAPGLESRSKLRALL 121 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 EK + AI+CYP+ L I + LL I +A DR A+R E++KL Sbjct: 122 EKAPNCAAIACYPEEGRVLEGSIRQMLLALGVEIDPDALSWFAERASPDRAATRAEVEKL 181 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHAL 250 + + +T + V+ I D + +E+ A + G A + + +++ +M Sbjct: 182 FLFAGQGGRLTHEDVQACIGDAASVSLEDAAFAAMSGDRAGADLAIERAMSTDRMNPIGA 241 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L L ++ + + + + + ++ IW+ + + + Sbjct: 242 ARALLSHIHRLRRVRLAMDA-GQGRADAMSALRPPVFFKRTEQFGRAVTIWDADALMQAA 300 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 ++ + + + I +A A Sbjct: 301 TWTQQLELACKQTGSPDVVLCKRHIARLATQAR 333 >gi|323137157|ref|ZP_08072236.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242] gi|322397515|gb|EFY00038.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242] Length = 339 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 13/348 (3%) Query: 1 MATIES---HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M ++S KF+ +FL F+ +GSD G++ E DPF V Sbjct: 1 MVAVKSGAAEKFVSAPPDGVFL----FLVFGSDAGMVRERALTIVSKRVDDRRDPFQFVE 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 ++ + + +E N+T LF ++ IL+E + K V+ + +I +++ Sbjct: 57 MSGDAVSADPLALLDEANTTPLFGGRRAILVETGA--KSVIPAVTSLISAPPAACTVVLT 114 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + +K++ LRK+ E I C PD + L LI+ +L EA+ +LLA L Sbjct: 115 AGALKRDAPLRKLVEGAKQGAGIECQPDTEHDLHALIDRTLREAGLVAGPEARGLLLAAL 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G DR+ SR EL KL+ Y + V+ I+ + + ++ A G++ Sbjct: 175 GEDRLMSRGELTKLALYMHGREHVEAADVEAIVAHASGVASDRVVTAAFGGEVGA---TL 231 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQE 296 + + A A+L G ++ L + + E + + M R +L+E Sbjct: 232 ESYFAQGGDPGAILFGAMRYAVALHRARLAMEREGGRTDAGVTVLMRAGFGFMHRALLEE 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L+ W + + + AR + + +A+ A + Sbjct: 292 HLKRWTSARLGALVEPLRVAQTRARANAGVALMEAENALWEVAKAARR 339 >gi|300024792|ref|YP_003757403.1| DNA polymerase III subunit delta [Hyphomicrobium denitrificans ATCC 51888] gi|299526613|gb|ADJ25082.1| DNA polymerase III, delta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 347 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 154/331 (46%), Gaps = 11/331 (3%) Query: 1 MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 M I++H+ F++ L + +F+GSD GL+ E + ++ + P ++ Sbjct: 1 MVAIKAHQAESFMKSPPAQLAAA----LFFGSDPGLVSERSTVLARTLAARENPPGEILR 56 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ E+ ++ E+ +F+ ++I+ +++ L + I+ + ++I++ Sbjct: 57 LDDSELDEDTGRLETELQMRPMFASRRIVR---AIAGRRISAQLLKPILSSPFEGLLIVE 113 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + +K ++TLR + EK + A++CYPD + LI E L SI +A+ +L + L Sbjct: 114 AGNLKTDDTLRALFEKTENCFAVACYPDAAADIDGLIAEVLSSFSLSIEGDARALLQSRL 173 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G DR SR E++KL+ + L +IT + V++++ D L +E I A +G+ A+ Sbjct: 174 GADRALSRAEIEKLALHSLGKQMITLEDVENVVGDAADLALERIAEAAAEGRTATAMTDF 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 LA+ + A++ + F L K+ + + ++ I +R+ Sbjct: 234 GRALAAGESAQAIILVTQRYFLKLHKVRSDVDA-GQRLDDALKAVRPPIFFKQRDAFARQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 +R W + + + L +I AR E Sbjct: 293 IRNWPRPQLDQALRRIAETAKSARLSSRYED 323 >gi|154251731|ref|YP_001412555.1| DNA polymerase III subunit delta [Parvibaculum lavamentivorans DS-1] gi|154155681|gb|ABS62898.1| DNA polymerase III, delta subunit [Parvibaculum lavamentivorans DS-1] Length = 347 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 66/348 (18%), Positives = 144/348 (41%), Gaps = 12/348 (3%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E+ +F K + + YG D GL+ E I + + DPF + L+ +++ Sbjct: 7 EADRFATKPDPKVV----AVLAYGPDAGLVRERIKMLARTVVDDLADPFRVAELSDTDLK 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 ++ + +E + ++ ++++ + + E + + ++++++ E+ Sbjct: 63 QDPARLSDEAAAIAMLGGRRVVRVRGAAD--ATAKIFESFLENPAGDALVLVEAGELGPR 120 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 ++LR + E + AI+CY D+ L ++I L A + L +LG DR + Sbjct: 121 SSLRLLFEGAANAAAIACYADDAGVLENVIRTRLANEGLVPEPAALEYLRDHLGSDRGVT 180 Query: 185 RNELQKLSSYC-----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +NEL+KL Y E +T + + D ++++I+A + G + + Sbjct: 181 QNELEKLILYAGPGKQGEKRAVTLDDARASVGDNAGTSLDDVIDAAMGGDLDGLDVALAR 240 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A++ + A+L+ + L E + E I+ + ++N +Q ++ Sbjct: 241 ARAAETNAIAILNALSRHLMQLHLATARIETGS-DVEGAIRSFRPPVHFSRKNAVQRQMK 299 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 +WN+ + L + + I QT+L IAQ A Sbjct: 300 LWNRKRLDRALALALEAEGQCKSSGQPDVAICGQTLLRIAQGARAARR 347 >gi|58038887|ref|YP_190851.1| DNA polymerase III subunit delta [Gluconobacter oxydans 621H] gi|58001301|gb|AAW60195.1| DNA polymerase III, delta subunit [Gluconobacter oxydans 621H] Length = 334 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 126/319 (39%), Gaps = 8/319 (2%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S + +G D GLI E Q + ++ T DPF + L+ ++ E + SL Sbjct: 18 SWRAIVLHGEDTGLIRERAAQAVRLVAGTTDDPFQVAQLD----RETQDRLEEEATALSL 73 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + L L + +++ +I+I++ I + LR +AE V + Sbjct: 74 IGGRRVVWVREG---QDSLAPLFKRVLETDTETLIVIEAPGITARSKLRALAEAHKQVAS 130 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+CYP+ L + ++L +I ++A L LG DR R E++KL Y E+ Sbjct: 131 IACYPEEGRALSQTVTDALGQAGVTIDRDALIWLTGVLGSDRSGVRGEIEKLVLYAGENG 190 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Q V+D + D +E+ + + G A + LA A+ L Sbjct: 191 RLDLQAVQDCVGDAGGNSLEDAAFSALCGNRMMADQALERALADGANPVAVARTVLGVLV 250 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L+K+ + ++ + + + ++L W + + Sbjct: 251 RLQKV-AQGVQDGQGRAESMKALKPPVFFKRTAAFNQALDRWPLAALSTAARETQAFELA 309 Query: 320 ARKKKYLEKNIIFQTILYI 338 ++ + + + I + Sbjct: 310 CKQSASPDMALCRRHIASL 328 >gi|312115575|ref|YP_004013171.1| DNA polymerase III subunit delta [Rhodomicrobium vannielii ATCC 17100] gi|311220704|gb|ADP72072.1| DNA polymerase III, delta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 140/340 (41%), Gaps = 7/340 (2%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 KF+ + F+FYGSD I + + L L+ ++ + Sbjct: 11 KFLAAPPPAIGG----FLFYGSDALQIAARAEALSRALLKKLGPDAELARLHDTDLAADP 66 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 E+ + SLF +I+ + +L K +++ I + +I ++ ++KK++ L Sbjct: 67 DRVIVELTTRSLFGGTRIVWLTSLPA--KAQAIVQDAIARPFDGAFLIAQAPDMKKSHKL 124 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + E + AI+CY +++ ++ I I EA ++ A + +R E Sbjct: 125 AQSFEAAPYLAAIACYGEDRDSVVAGIRHQAAEAGYEIDGEAAALVAARCDCSALLARAE 184 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +KL +Y ED IT V+D + D + +I++A + G AI+ + ++A++ Sbjct: 185 TEKLITYAGEDRCITAAQVEDCLNDQQTAGLSDIVDAALDGDGRKAILAFERYMAAEANV 244 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + L + + S + I++ + +++ L +R W + Sbjct: 245 SPVFVVLASSLLRLHALRAAVDA-GASPMQAIKELRPPVFFKQQDALAAQVRKWTVPALA 303 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L ++ + R K L ++I + +L +A+ A + Sbjct: 304 ARLGDLNAALRDTRLKPALAEDIAARFLLTVAKEARAASR 343 >gi|296446252|ref|ZP_06888199.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b] gi|296256289|gb|EFH03369.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b] Length = 343 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 142/331 (42%), Gaps = 8/331 (2%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++S + Q+ + F+F+ +G+D GL+ E DPF + ++ Sbjct: 1 MVAVKSRE-AQRFVDAPPAAIFLFLLHGADAGLVRERALALIAKRVDDRRDPFQCIEMSG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + + +E N+ +F ++ IL+E + K + LE+++ + +++ + Sbjct: 60 DAVAADPLSLLDEANTVPMFGGRRAILVE--AGSKSINAPLEQLLAAPPRDCAVVVTAGV 117 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +K++ LRK+ E AI C PD + L LI+ESL + + EA+ +L A LG D Sbjct: 118 LKRDAPLRKLIEPAKLGAAIECQPDAEQDLEALIDESLRAAGLAATPEARMLLRAALGED 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R SR EL KL+ Y + + + V+DI+ + + ++ G A D Sbjct: 178 RRMSRAELAKLALYKHGETTVEAKDVEDIVAHASAIASDRLVIDAFSGVAAAAGEELDRA 237 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK---IIQKTEKNIIPMKRNILQES 297 LA LL G L+ L + + + + I+ ++ + P R L+ Sbjct: 238 LAGGADPGQLLGGALRYAMALHRARLAADREGGRTDAGVTILMRSGFGVFP--RPALERH 295 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 L+ W + + + AR + + Sbjct: 296 LKSWTAAKIAGVIAPLREAQRRARVDASVAE 326 >gi|218670995|ref|ZP_03520666.1| DNA polymerase III subunit delta [Rhizobium etli GR56] Length = 220 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 113/219 (51%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94 E Q + DPFSL L+ ++QK+ +E S LF +K+I I + E Sbjct: 2 SERAGQLAGKTGVALDDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANE 61 Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 K ++D L + K + +I+++ ++KK + LRK AE +V+ + Y D+ L LI Sbjct: 62 KYLVDSLALLAEKPLEAAYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLI 121 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + L + I+ A+Q L+A +GGDRIASRNE++KL+ YC + E HV +II D Sbjct: 122 DAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDAS 181 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + +++ ++A + G + + +SK +L Sbjct: 182 AISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFIVLQA 220 >gi|296533439|ref|ZP_06896022.1| DNA-directed DNA polymerase III delta subunit [Roseomonas cervicalis ATCC 49957] gi|296266219|gb|EFH12261.1| DNA-directed DNA polymerase III delta subunit [Roseomonas cervicalis ATCC 49957] Length = 345 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 10/330 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + +G D GLI E ++ +DPF L L E E+ + ++ Sbjct: 20 RAVLLHGDDAGLIQERAEALVASVVGG-NDPFRLAEL-PREAAAKPGALAGEMAALAMTG 77 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++ + + + + + ++E + +++++ E+ LR E I+ Sbjct: 78 GRRLVRVRDATD--ALANAVKEALA-GPGEALLVLEGGELTARAKLRTQLEAARDAAVIA 134 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY + L I L +I A L + LG DR+ R E++KL+ Y + Sbjct: 135 CYRERGAELAASIGRMLQEQGVAIDPPALDWLSSRLGEDRMLLRREVEKLALYAGAGGRL 194 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 +E+ V + L ++E + A G I A + A A+L L+ Q L Sbjct: 195 SEEDVLACAGEGSTLDLDEALIAATAGDIPLADRALEAAFAEGASPIAVLRAALRHVQRL 254 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + ++ + + + +LR+W+ L+ + + Sbjct: 255 HLASLAV-ARGQPASAAMEGLRPPVFFRAKPGFERALRLWSPALLEAAGTALLEAEKRGK 313 Query: 322 K----KKYLEKNIIFQTILYIAQTACKNNN 347 + + + +L +A+ A Sbjct: 314 SGSAARPIPDATVARAAVLTLARQAVALRR 343 >gi|148261040|ref|YP_001235167.1| DNA polymerase III subunit delta [Acidiphilium cryptum JF-5] gi|326404439|ref|YP_004284521.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301] gi|146402721|gb|ABQ31248.1| DNA polymerase III, delta subunit [Acidiphilium cryptum JF-5] gi|325051301|dbj|BAJ81639.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301] Length = 334 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 130/323 (40%), Gaps = 8/323 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG D L+ E + K ++ + DPF L L+A + E + + Sbjct: 19 RFVLVYGPDTSLVAERARRLAKLVAGSLDDPFRLTELDADTAE----RLPEEAGAQAFGG 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++L+ + + E ++ + +I+ ++ + LR +AEK AI+ Sbjct: 75 GRRVVLLRDAGDRQV---APVEAALEGKGDALIVAIGGDLPGRSKLRALAEKHAEAAAIA 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY + +E +L I +EA + + LGG+ A R+ ++L+ Y + + Sbjct: 132 CYLPDGAARGPALEAALRAAGVGIGREALALAASRLGGETGALRDAAERLALYAGPNGAV 191 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + V+ ++ D +++ I+A + G + A L A++ L + L Sbjct: 192 DIEAVEAVLDDQGSASMQDAIDAALAGDVKAADHAIGLALEEGAAPVAVIRVLLGELAGL 251 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + S + + ++ ++ +++ W + + + + + Sbjct: 252 RLM-ADAVAGGASPRDAVAARRPPVFFKRQPVVMKAVARWREPAIMAAIERGLRAEADCK 310 Query: 322 KKKYLEKNIIFQTILYIAQTACK 344 + + + I+ Q +L +AQ A + Sbjct: 311 RTGAVPEAIVRQMLLGLAQRAAR 333 >gi|114571498|ref|YP_758178.1| DNA polymerase III subunit delta [Maricaulis maris MCS10] gi|114341960|gb|ABI67240.1| DNA polymerase III, delta subunit [Maricaulis maris MCS10] Length = 350 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 135/352 (38%), Gaps = 15/352 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 S + KN S ++ YG D+GL E + I DPF+L L +++ Sbjct: 4 SAREADARVKNPDPSIRAYLIYGPDRGLTHERAQTLVRAILEDPDDPFALTQLTEEDLKS 63 Query: 66 NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEIK 122 + + + + + SL K+++ + + +++ ++ + +++++S ++ Sbjct: 64 DPAGLADAMAALSLTGGKRLVRVRLTGETGSGPIIEIIKGLESGSETAEAVLLVESGDLT 123 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 LRK E + I+CY D L L E L + +++EA+ L L GDR Sbjct: 124 PRGKLRKAFEPAKKAITIACYADTSHSLESLCESMLKVEGLQLAREARTEWLPRLEGDRA 183 Query: 183 ASRNELQKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 +R E++KL Y D IT + V+ + D ++ ++ T+ G + A Sbjct: 184 LARGEIEKLILYKGLRSQRAEGDDTITREDVEAVAADQGEAQLDAVLAPTLLGLLAKADS 243 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + + + +L ++ L +H + ++ + + + Sbjct: 244 AYHRSITAGGSAVGILRALQRRLDQLGAVHAAGGNEG-----AMARSGAPRYGPQADAFK 298 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L +W + ++ + ++ +L +A+ A + Sbjct: 299 RQLSLWRGRRLEHARQLAFDAERAVKRSGAPAEALVGDLLLRLARGAAQMGR 350 >gi|304320512|ref|YP_003854155.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis HTCC2503] gi|303299414|gb|ADM09013.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis HTCC2503] Length = 351 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 69/354 (19%), Positives = 129/354 (36%), Gaps = 11/354 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I++ + T V +FYG D GL+ E + I +DPF+ + L+ Sbjct: 1 MVAIKTGEIGSWLTARPK-GVAVALFYGPDGGLVQERARRLSHYIVEDVNDPFNAISLSE 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKS 118 +I+ + +E + S +++I + K V L I N +++I++ Sbjct: 60 GDIES-VGQLADEAMALSFMGGERLIRLRTPGEKAAKGVTHLLTRIEAGAAPNALVVIEA 118 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++KK + LRK EK AI CYP L + I L SI A L+ +G Sbjct: 119 GDLKKTSALRKACEKSRFAAAIGCYPQEGKDLAETIRTRLKQESLSIDDAALLRLVTLMG 178 Query: 179 GDRIASRNELQKLSSYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 D +EL+KL Y +TE + + + EI + T++G Sbjct: 179 DDHGVLSSELEKLILYMGPQSLRAGTAEVTETDIAQALAQSTADATFEIADLTLRGDSPT 238 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + + +L + L + E + ++ I ++ Sbjct: 239 LSEALFRARGAGVSLLGVLRILQGRLARLMTVK-EAEAAGRPRADAMKSVRPPIFYGEQR 297 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 L W+ + + A++ +I +T+ +A+ A + Sbjct: 298 AFTALLEKWSLRDLERAAMTLLEADLAAKQTGVPATEVIERTLFRLARLAQRPG 351 >gi|294085218|ref|YP_003551978.1| DNA polymerase III subunit delta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664793|gb|ADE39894.1| DNA polymerase III, delta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 344 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 139/333 (41%), Gaps = 8/333 (2%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 + F+F+G+D GLI E + S D FS+ L++ I+ ++S + ++ Sbjct: 14 HPPAHMRAFLFHGNDIGLIHERALALASHYSDNLDDVFSVTRLDSRAIENDVSVIADALS 73 Query: 76 STSLFSKKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKI 130 S ++F+ +++L+ TE +++ + + + ++I+++ E + + K+ Sbjct: 74 SIAVFADTRLVLVRGRGTE--LVEACKLALTPRDNTPPLEGAVLIVEARETTTRHAIVKL 131 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +I CY D+ + DL++ S +I + +++A LG DR +SR E++K Sbjct: 132 FETGDICASIGCYADDSGTIRDLVQTSFAALSINIDRPVMDLIVAKLGADRASSRREIEK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS + +T Q ++D + D+ VL I+++ A G I + + Sbjct: 192 LSLMAGQGGTLTAQDIEDALEDSTVLAIDDVAGAVADGDIPRLQSAITKAWSEDANPVMV 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + G F+ L + S + I+ + + + L W L Sbjct: 252 IRGCHNYFRSLLIAAHAVSTGS-SRDMAIKSLRPPVHFKLQGRMAAQLNKWGYQQAMAAL 310 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 K+ + ++ I Q +L + A Sbjct: 311 DKLQDIELALKSSSPDDRVICMQGLLGLCLRAR 343 >gi|73666710|ref|YP_302726.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake] gi|72393851|gb|AAZ68128.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake] Length = 334 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 16/329 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALE 62 + H F S + YG+D G I N +K+ I I + FS ++ Sbjct: 7 KLHSFFNNP-----QSFNNILIYGNDYGKI----NMYKEKIIKHINTNTEFSTSNIDYPT 57 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + KN ST + E+ + S+F K K+I+I N EK + L+ I+ NI + +II S E+ Sbjct: 58 VNKNPSTLFIELTTISMFCKNKLIIIAN--GEKSISQELKNILNNNIGRNYVIITSGELS 115 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +++LR+ + + +I CY D+ +L +I + L + + Q L + L + Sbjct: 116 IDSSLRQYYDNSLNAASIGCYKDDNDNLAFIISDFLTQNKVHYNCTTLQYLCSVLSQNCN 175 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A ELQKL Y + +T + +++ + E++ + + + N ++ L Sbjct: 176 ALEPELQKLMLYIGNNKNLTTKDIQESLLTEIDPISEDLCISIAEKNLENFTKFSNILLK 235 Query: 243 SKMPSHALLHGFLQKFQLLE-KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 +K AL+ ++ F LE I ++K+ +I+ + ++ I +++ + Sbjct: 236 NKFTPIALIRILIKYFLRLEYLIRVVKDGESIN--QALKSIHPPIFFKSIPTIKKHISTI 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNI 330 + V + K+ +K ++ I Sbjct: 294 SYFEVNNIIKKLAEIEIQCKKSDLNQEVI 322 >gi|57238818|ref|YP_179954.1| hypothetical protein Erum0870 [Ehrlichia ruminantium str. Welgevonden] gi|58578747|ref|YP_196959.1| hypothetical protein ERWE_CDS_00830 [Ehrlichia ruminantium str. Welgevonden] gi|58616807|ref|YP_196006.1| hypothetical protein ERGA_CDS_00800 [Ehrlichia ruminantium str. Gardel] gi|57160897|emb|CAH57802.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58416419|emb|CAI27532.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] gi|58417373|emb|CAI26577.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 339 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 143/307 (46%), Gaps = 5/307 (1%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG+D G I ++ +I F++ ++ I KN T + E+++ +F + Sbjct: 21 ILIYGNDYGKISMYRDKIISSIRSNVD--FTITNIDFPSINKNPGTLFVELSTVPMFCTR 78 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 K++++ N EK + + L +I+ NI N+ +II + E+ ++TLR+ + +S ++I CY Sbjct: 79 KLLILTN--GEKVLSNELRDILEHNIGNNYVIIIAGELPNDSTLRQYYDSSSSAVSIGCY 136 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 D+ +L ++ + L + E Q L +L + A ++EL+KL Y +T Sbjct: 137 KDDNNNLAFIVSDFLTENNVQFNNEILQYLCHSLSKNPHALQSELEKLILYIGNSKNLTI 196 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 Q +++ + +++ + ++ I N ++ L +K L+ L+ F LE Sbjct: 197 QSIQEGLLTELDPVSDDLYISIVERDIENFTKFSNILLKNKFTPILLIRVLLKYFLRLEY 256 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 I I S I +++++ + + I+++ + + + V + K+ +K Sbjct: 257 I-IRTITSGIPIDQVLKLIQPPVFFKLVPIIKKHVVNVSYDEVNYIIRKLLEIEIQCKKS 315 Query: 324 KYLEKNI 330 + I Sbjct: 316 DSNHEII 322 >gi|218682742|ref|ZP_03530343.1| DNA polymerase III subunit delta [Rhizobium etli CIAT 894] Length = 212 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 111/209 (53%) Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 S++ I Y D+ L LI+ L + I+ A+Q L+A +GGDRIASRNE++KL+ YC Sbjct: 1 SIMTIPSYADDSRALNALIDTELGTEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 60 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + E HV +II D + +++ ++A + G + + +SK +L L Sbjct: 61 RGYPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNAFLHAMQKISSSKTAIFLVLQACL 120 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++FQLL+ + E + +I+Q +++ ++ I++++LR W + +++ Sbjct: 121 KQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQALRHWTAESIARESNRLQA 180 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACK 344 I +R+++ LE ++ QT+L + + Sbjct: 181 AILQSRRRQVLEDSVAMQTLLSTTLQSGR 209 >gi|88657564|ref|YP_506954.1| hypothetical protein ECH_0126 [Ehrlichia chaffeensis str. Arkansas] gi|88599021|gb|ABD44490.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 334 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 146/328 (44%), Gaps = 14/328 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALE 62 + H F NL L++ + + YG+D G I +KK I + + F++ ++ Sbjct: 7 KLHSFFN----NLQLTNNI-LIYGNDYGKIS----MYKKKIINHVNTNSEFAISNIDFST 57 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + KN ST + E+ + S+F + K+I++ N EK + L+ ++ NI N+ III S E+ Sbjct: 58 VNKNPSTLFIELTTISMFCQNKLIILAN--GEKSISQELKHVLSNNIGNNYIIITSGELS 115 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 ++TLR+ + + +I CY D+ +L +I + L + + Q L L + Sbjct: 116 PDSTLRQYYDNSRNAASIGCYKDDNDNLSFIISDFLTKNKVQYNATTLQYLHNVLSQNCN 175 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A + EL+KL Y + +T Q++++ + E++ + + + N +D L Sbjct: 176 ALQPELEKLILYIGNNKNLTIQNIQESLLTEIDPISEDLCVSVAEKNLENFTKFSDVLLK 235 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +K AL+ ++ F LE + I + + I+ I +++ + Sbjct: 236 NKFTPIALIRILIKYFSRLEYL-IRTIKNGEPINQAIKSIHPPIFFKSIPTIKKHVSAIP 294 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNI 330 + + K+ +K ++ I Sbjct: 295 YAEINNIIKKLVEIEIQCKKSDSNQEVI 322 >gi|91762513|ref|ZP_01264478.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|91718315|gb|EAS84965.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 331 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 151/328 (46%), Gaps = 13/328 (3%) Query: 21 HFVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + +FYG ++GL E I N F++N H EI +I+ F+N + + S Sbjct: 16 YKFHLFYGENEGLKEENIKNLFEENYKDKIH------RYEEKEILDDINIFFNSVLTKSF 69 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F +K+I+I + K+ +EE+I KN + II+ S ++K +TLRK EK S++ Sbjct: 70 FDNEKLIIINRATD--KIKTIIEELIEKNPEDIKIILNSKNLEKKSTLRKFFEKEKSIVC 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + Y DN L +I + IS++ +L+ GDR NEL+K+ ++ L Sbjct: 128 VPFYEDNNQTLNSIISLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENFSLNKK 187 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Q + + E+++ ++ + + S + ++ L K + Sbjct: 188 NLNIQEIIKLTNLADNYSASELVDHSLAKNTRKTVTILSENNYSDEDNIIIIRTLLAKLK 247 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L KI+ + + N + E+ I + I + ++ + +R W K+ + + ++K + L Sbjct: 248 RLVKIYDLIDEKN-NIEQAISACKPPIFWKDKPLVTQQVRSWKKDGLEQLIYKTNEIELL 306 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347 +K L KNI+ +I + K NN Sbjct: 307 VKKNSVLAKNILAD---FIINNSKKTNN 331 >gi|83944974|ref|ZP_00957340.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii HTCC2633] gi|83851756|gb|EAP89611.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 68/346 (19%), Positives = 138/346 (39%), Gaps = 13/346 (3%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ S+ V++ YG D G++ E + K + DPFS+ L +I+ + + Sbjct: 8 ADRALAQPDGSYTVYLIYGPDGGMVRERADTLSKALVKDPDDPFSVTRLTDEDIKADPAA 67 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLR 128 + + + SL +++ + V + E+ ++I+S ++KK + LR Sbjct: 68 LADALAALSLTRDPRLVRLRLSGDSAPVAKLIAEVDEGVTPSEATLVIESGDLKKTSKLR 127 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K AE LA CY D L+ L E+ ++ EA+ +L L GDR +R+E+ Sbjct: 128 KAAEDGKRTLAAPCYADTARDLITLAEDMFRAEHLTLEPEARAMLAPFLEGDRALARSEI 187 Query: 189 QKLSSYC-------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 KL Y +D +IT Q + DI +++I++ + G I A L Sbjct: 188 DKLILYKGLADQREGQDDVITRQDIADISAVGSEAAMDQILDPALGGDIRAADAAYARGL 247 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 ++ + +L G ++ + H S + + + + S ++W Sbjct: 248 SAGLNPVGVLRGLQRRIDQFDTFH-----SGGGDAGALARAGAPRFGPPADQFKRSAKLW 302 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + ++ + I+ IL +++ A + Sbjct: 303 TGRRLDQARKYAFDAERAVKRSGAPAEAIVGDLILRLSRAAAQARR 348 >gi|71083061|ref|YP_265780.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|71062174|gb|AAZ21177.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 331 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 153/335 (45%), Gaps = 13/335 (3%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 K ++ ++FYG ++GL E I N F+KN H EI +I+ F+N Sbjct: 9 PKIKLNNYKFYLFYGDNEGLKEENIKNLFEKNYKDKIH------RYEEKEILDDINIFFN 62 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 I + S F +K+I+I + K+ +EE++ K + II+ S ++K ++LRK+ E Sbjct: 63 NIFNKSFFDNEKLIIINRATD--KIKTIIEELMEKKPEDIQIILNSKNLEKKSSLRKLFE 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K S+ I Y DN L +I + IS++ +L+ GDR NEL+K+ Sbjct: 121 KEKSIACIPFYEDNNQTLNSIISLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIE 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++ L + Q + + E+++ ++ + + S + ++ Sbjct: 181 NFSLNKKNLNIQEIIKLTNIADNYSASELVDHSLAKNTRKTVTILGENNYSDEDNIIIIR 240 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L K + L KIH + E N + E+ I + I + ++ + +R W K+ + + ++K Sbjct: 241 TLLAKLKRLVKIHELVEEKN-NIEQAITACKPPIFWKDKPLVIQQIRSWKKDGLEQLIYK 299 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + L +K L KNI+ +I + K NN Sbjct: 300 TNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331 >gi|315497184|ref|YP_004085988.1| DNA polymerase iii, delta subunit [Asticcacaulis excentricus CB 48] gi|315415196|gb|ADU11837.1| DNA polymerase III, delta subunit [Asticcacaulis excentricus CB 48] Length = 350 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 52/347 (14%), Positives = 133/347 (38%), Gaps = 14/347 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E F++ +++ + YG D+G + E + I DPF++ +L +I Sbjct: 8 EIEGFLKAPPRDVIAC----LIYGKDRGQVLERGQALAQKIVPDIKDPFNVSLLTDTDID 63 Query: 65 KNISTFWNEINSTSLFSKKKIILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSN 119 + + +E+ + SL ++++ + E + +K+V L+ + ++ + +I++ Sbjct: 64 ADPARLEDELQAQSLMGGRRLVRLKFFSEKAALDKQVAAALKAHVAGDLNRDAFFLIEAG 123 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + ++ +RK+A+ ++ +I+CY D ++ + E+L + +++ +A I A L Sbjct: 124 GLGGDSAVRKLADADKAIASIACYEDETGDVVRMARETLAQNEVALTPDAMDIFAARLPK 183 Query: 180 DRIASRNELQKLSSYCLEDILITEQH--VKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +R +R E+++L + T +++ + + + K+ A Sbjct: 184 ERGVARQEIERLCLFIGPGSRRTIDDKELQEFLGVEPDASLFDAALQAFGAKMALAQAGL 243 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A A L L I I ++ + + + Sbjct: 244 RRAFAEGEDGSAALRALNGHLVKLRLIQAQI-AKGIDAKQAARAAG--VFWKQEAEFLRQ 300 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R W+ + ++ + + + + + IA A + Sbjct: 301 ARAWSDFYLDPLSKELIETDKQCKSTGMPDLLLAERLYMSIAGRARR 347 >gi|221236803|ref|YP_002519240.1| DNA polymerase III subunit delta [Caulobacter crescentus NA1000] gi|220965976|gb|ACL97332.1| DNA polymerase III, delta subunit [Caulobacter crescentus NA1000] Length = 350 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 134/346 (38%), Gaps = 14/346 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +F+++ T ++ + YG D+G++ + N + + DPF L ++ Sbjct: 9 VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDA 64 Query: 66 NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120 + + +E+++ SL ++++ + +K+ + L + + + ++++ Sbjct: 65 DPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK I CY D L L ++L + S++ EA ++ ++ L + Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALELFVSRLPKE 184 Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 R +R E+++L+ Y I T + D + + + GK+ A Sbjct: 185 RGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQQALR 244 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A A + L ++ + + + + + + + Sbjct: 245 RAAAEGEGGPAAVRAMGYYLGRLRRV-LTLHKNGVDLQAAAKAAG--VFWKQEREFLRQA 301 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R WN + E +I + ++ I + L IA A + Sbjct: 302 RAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARR 347 >gi|16127981|ref|NP_422545.1| DNA polymerase III subunit delta [Caulobacter crescentus CB15] gi|13425525|gb|AAK25713.1| hypothetical protein CC_3751 [Caulobacter crescentus CB15] Length = 350 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 134/346 (38%), Gaps = 14/346 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +F+++ T ++ + YG D+G++ + N + + DPF L ++ Sbjct: 9 VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDA 64 Query: 66 NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120 + + +E+++ SL ++++ + +K+ + L + + + ++++ Sbjct: 65 DPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK I CY D L L ++L + S++ EA ++ ++ L + Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSRLPKE 184 Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 R +R E+++L+ Y I T + D + + + GK+ A Sbjct: 185 RGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQQALR 244 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A A + L ++ + + + + + + + Sbjct: 245 RAAAEGEGGPAAVRAMGYYLGRLRRV-LTLHKNGVDLQAAAKAAG--VFWKQEREFLRQA 301 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R WN + E +I + ++ I + L IA A + Sbjct: 302 RAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARR 347 >gi|295691569|ref|YP_003595262.1| DNA polymerase III subunit delta [Caulobacter segnis ATCC 21756] gi|295433472|gb|ADG12644.1| DNA polymerase III, delta subunit [Caulobacter segnis ATCC 21756] Length = 350 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 137/346 (39%), Gaps = 14/346 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +F+++ T ++ + YG D+G++ + N K + DPF L +++ Sbjct: 9 VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALAKRVVERPDDPFDTAQLTESDVEA 64 Query: 66 NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120 + + +E+++ SL ++++ + +K + + + ++ + +I++ Sbjct: 65 DPAKLEDELSAMSLMGGRRLVRLRLNGEKAGPDKAAAEAVTRHVEGHLNPDAFFLIEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + +++ LRK+ EK + I CY D L L ++L + S++ EA + ++ L + Sbjct: 125 LGRDSQLRKVGEKASGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALDLFVSRLPKE 184 Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 R +R E+++L+ + I T + D + + + GK+ A Sbjct: 185 RGVARAEIERLALFLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQAALR 244 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A A + L ++ + + + + + + + + Sbjct: 245 RAAAEGEGGPAAVRAISYYLGRLRRV-LTLHKNGVDLQAAAKASG--VFWKQEREFLRQA 301 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R WN + E ++ + + ++ I + L IA A + Sbjct: 302 RAWNLEAILEIQGEVLNADRACKTSGSPDQLIAERLALMIAGRARR 347 >gi|329847391|ref|ZP_08262419.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19] gi|328842454|gb|EGF92023.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19] Length = 350 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 125/351 (35%), Gaps = 18/351 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E + ++ + YG D+ + E K I DPF++ ++ +I+ Sbjct: 8 EIDALFKNPPSHVLG----VLIYGKDRSQVIERATVLAKRIVPDITDPFNVSLITDTDIE 63 Query: 65 KNISTFWNEINSTSLFSKKKIILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSN 119 + + E+ S S+ ++++ + E + +K V +++ + +II++ Sbjct: 64 NDPARLEGELQSLSMMGGRRLVRLKFFTEKAALDKAVAAVVKQHAAGDYNREAFLIIEAG 123 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + + LR++A+ ++++I+CY D ++ + E+ S++ A I L Sbjct: 124 SLGGESALRRLADADKALVSIACYEDETGDIIRMAREAFAANGVSLTTGAMDIFAQRLPK 183 Query: 180 DRIASRNELQKLSSYCLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +R + E+++L + T + ++D + + + G++ +A Sbjct: 184 ERGIAHQEIERLILFIGPHSHKTLEERELQDFLGVEPEASLFKAAQDAFGGRMKSAQAGL 243 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQ 295 A + + ++ + K+ + + Sbjct: 244 RRAFAEGETGPDAMRALSGHYNKVKLLKTNMSKGMGGKEAAKVS-----GVFWKDEADML 298 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + W+ +L+ + + + I + L IA A + Sbjct: 299 RQAQTWSFDLLDPLASDLIEADKQCKSTGMPDLLIAERLYLQIAGKANRAG 349 >gi|167648983|ref|YP_001686646.1| DNA polymerase III subunit delta [Caulobacter sp. K31] gi|167351413|gb|ABZ74148.1| DNA polymerase III, delta subunit [Caulobacter sp. K31] Length = 350 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 129/345 (37%), Gaps = 14/345 (4%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +F++ ++ + YG D+G++ + +Q K + DPF L ++ Sbjct: 10 ERFLRDPAADV----RAVVIYGRDRGVVRDRADQLVKRLFERPDDPFDTAQLTESDLDAQ 65 Query: 67 ISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEI 121 +E+++ S+ ++++ + +K+ + L + + + +I++ + Sbjct: 66 AGKLEDELSALSMMGGRRLVRLRLTGEKGGPDKQAAEALTRHVEGQLNPDAFFLIEAGAL 125 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 +++TLRK+AEK I CY D L L E++ + S++ EA + ++ L +R Sbjct: 126 GRDSTLRKVAEKAAGAAVIPCYEDEAGDLARLTRETMAKDKVSLNGEALDLFVSRLPKER 185 Query: 182 IASRNELQKLSSYCLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +R E+++L+ + + T + D + + + G++ A Sbjct: 186 GVARAEIERLALFLGPGSGAVATPADLTDFLGVEPEASLGDAAVDAFGGRLGPAQAGLRR 245 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A A + L + + + + + + + R Sbjct: 246 AAAEGEGGPAAVRAMGYHLGRLRRT-LTLHKNGVDLAAAAKASG--VFWKTEREFLRQAR 302 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 W + + +I + ++ I + L IA A + Sbjct: 303 AWTLDQLLAVQAEILAADKACKTSGSPDQLISERLALQIAGKARR 347 >gi|302381489|ref|YP_003817312.1| DNA polymerase III subunit delta [Brevundimonas subvibrioides ATCC 15264] gi|302192117|gb|ADK99688.1| DNA polymerase III, delta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 350 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 50/347 (14%), Positives = 126/347 (36%), Gaps = 14/347 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E +F+ + + + + +G D+ + E K I+ +DPF++ VL +I Sbjct: 8 EVDRFLARPDAGIRAA----VIHGKDRSGVAERAEILCKAITPDLNDPFNVTVLTDSDID 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSN 119 + + + + S+ ++++ + + + + L + + + +++I++ Sbjct: 64 GDEARLEEALTALSMIGGRRLVRVRLGADKASIDKMLAAALKTHGEGGYNPDAMLVIEAG 123 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + +++ LRK AE + + I+CY D + + E+L + ++ +A + +A L Sbjct: 124 ALGRDSVLRKAAEAGKASVGIACYEDEAGDIARMTREALAADKVGLTSDALAVFVARLPK 183 Query: 180 DRIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +R R E+++L+ Y I + + + + + G+ A Sbjct: 184 ERGLMRQEIERLALYVGPGSGRTIDVEELDAHLGVEADASLADAALQAFGGRPAPAQSGL 243 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 LA + + L K+ I + + + Sbjct: 244 RRALAEGESAVMAVRSASIH---LGKLRRINVLQGSGAGAKEAAKAAGVFWKQEAEMLRQ 300 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R W + ++ + E I + +L I+ A + Sbjct: 301 ARAWRLEELDVVQDSVNTADVATKTTGLPEHLIAERLLLEISARARR 347 >gi|329891185|ref|ZP_08269528.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC 11568] gi|328846486|gb|EGF96050.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC 11568] Length = 350 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 54/348 (15%), Positives = 129/348 (37%), Gaps = 14/348 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +F++ + + + +G D+ + E + I+ +DPF++ +L +I Sbjct: 9 VDRFLKAPDAGVRAA----VIHGKDRSGVTERALTLCRTITPDLNDPFNVTLLTEADIDG 64 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSNE 120 + + + S+ ++++ I + V + + + + +++I++ Sbjct: 65 DAVRLEEALTALSMIGGRRLVRIRMSDGKAGVDKAVAAALTAHAEGAYNPDAMLVIEAGA 124 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + + + LRK AEK +AI+CY D + + E+L + +S +A +A L + Sbjct: 125 LGRESALRKAAEKAQGAVAIACYEDEVGDVARMTREALGADKVGLSSDALDRFVARLPRE 184 Query: 181 RIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 R R E+++L Y I + + + + + G+ A Sbjct: 185 RGLMRQEIERLILYIGPGSGRTIDIEELDAHLGVEPDASLSDAALQAFGGRPGPAQAGLR 244 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 LA + + L +I++++ + E + + + Sbjct: 245 RALAEGESAVMAVRMASLHLGKLRRINVLQANGAGAKEAAKAAG---VFWKQEAEMLRQS 301 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 R W L+ E ++ + + E I + +L IA A + Sbjct: 302 RAWRLELLDEVQDSVNTADVMTKTTGMPEALIAERLLLEIAARAKRMG 349 >gi|254418443|ref|ZP_05032167.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3] gi|196184620|gb|EDX79596.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3] Length = 350 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 131/347 (37%), Gaps = 14/347 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E +F++ + + + +G D+ + E + I+ +DPF++ VL +I Sbjct: 8 EIDRFLKAPDPAVRAA----VIHGKDRSGVAERAEVLCRAITPDLNDPFNVTVLTDSDID 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSN 119 + S + + SL ++++ I + + V + + + + +++++++ Sbjct: 64 SDESKLEEALTAMSLMGGRRLVRIRLSALKPGVDKAVAAAVKIHAEGGYNPDAMLVVEAD 123 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 ++ + + LRK AEK + I CY D + + E+L + ++ +A + L Sbjct: 124 QLGRESALRKTAEKEAGAVGIVCYEDETGDIARMTREALAADKVGLTADALDRFVGRLPR 183 Query: 180 DRIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +R R E+++L+ + I + ++ + + + + A Sbjct: 184 ERGLMRQEIERLALFIGPGSGRTIDVEELEQHLGVEPDASLSDAALQAFGARPGPAQSGL 243 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A S + L +I+I++ + E + + + Sbjct: 244 RRAFAEGESSVLAVRSAALHLGRLRRINILQANGAGAKEAAKAAG---VFWKQEAEMLRQ 300 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 R W + E L I+ + ++ I + +L IA A + Sbjct: 301 ARAWRLEALDEVLDSINTADVATKTTGMPDQLIAERLLLEIAGRARR 347 >gi|197106980|ref|YP_002132357.1| putative DNA polymerase III, delta subunit [Phenylobacterium zucineum HLK1] gi|196480400|gb|ACG79928.1| putative DNA polymerase III, delta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 48/342 (14%), Positives = 124/342 (36%), Gaps = 10/342 (2%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 I++ + + YG D G++ + +Q DPF + +L +++ + Sbjct: 9 IERFLAKADAAVRAALIYGRDLGVVRDRGHQLAAKTVPNPDDPFDVAILTEVDVADDPPR 68 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-----ICNHIIIIKSNEIKKN 124 E+ + SL ++++ + S + V + E + ++ + +I++ + ++ Sbjct: 69 LEGELAAQSLMGGRRLVRLRLSSEKPAVDKAVAEALERHAKGELNPDAFFLIEAGNLGRD 128 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + LRK+ EK + I CY D + L++E+L ++ +A + +A + +R + Sbjct: 129 SALRKVGEKQPACATIPCYEDEPGDVARLVKETLARDNVGLNADALALFVARMPKERGVA 188 Query: 185 RNELQKLSSYCL-EDILITE-QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 R E+++L+ + I ++D + + + G++ A Sbjct: 189 RQEIERLALFLGPGSGTIAAPAQLEDFLGVEPEASLFDAAADAFGGRLAEAQAGLRRAAQ 248 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 A + L + + + E + + R W+ Sbjct: 249 EGESGPAAVRAIGMHLGKLRRTLTLAKAGAGLQEAAKAS---GVFWKQEREFLRQARAWS 305 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + ++ + ++ I + L +A A + Sbjct: 306 LEELDRIQPEVLAADKACKTAGSPDRLIAERLALTVAGRARR 347 >gi|218660469|ref|ZP_03516399.1| DNA polymerase III subunit delta [Rhizobium etli IE4771] Length = 178 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 87/164 (53%) Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +V+ + Y D+ L LI+ L + I+ A+Q L+A +GGDRIASRNE++KL+ Sbjct: 3 AARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLA 62 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + E HV +II D + +++ ++A + G + + +SK +L Sbjct: 63 LYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFLVLQ 122 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 L++FQLL+ + E + +++Q +++ ++ IL++ Sbjct: 123 ACLKQFQLLDTMRAEMEEKRLQAPQVMQTMGRHLHFRRKPILEQ 166 >gi|294010026|ref|YP_003543486.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S] gi|292673356|dbj|BAI94874.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S] Length = 345 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 125/344 (36%), Gaps = 11/344 (3%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 K + + + L F+ +G D+ L + ++ + + L+ ++ + Sbjct: 9 EKALDAAGQGLAPDCRFFLLHGPDEAGSAALAKRLERAMGPDAER----IDLDPSTLRDD 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + +E S S+F ++ I ++ + L ++ + +I + +K + Sbjct: 65 PARLADEAASFSMFGDRR--WIRVTGMGEESVPALNALLEAEAAGNPVIAVAGALKGTSK 122 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L K+A +A + Y + + G +S E + + GDR Sbjct: 123 LLKLALDHKQTMAFASYQPDAREAEQIAVAIGREGGLRLSPELGRRIADLTNGDRTLMAG 182 Query: 187 ELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 E++KL Y TE+ + + D ++NA + G + Sbjct: 183 EVEKLILYLDAAPDRPREATEEALDALSADNPDSDAAPLVNAVLGGDLRGMHRELGRLAE 242 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + A+L L + LL I + S + ++ K + ++ ++ +RIW+ Sbjct: 243 AGTAMAAVLRPLLTRAMLLANIRADFDESGR-LDGAVEAAGKAVFWKEKGVVTRQVRIWD 301 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ +R + L ++ +L IA+ A + Sbjct: 302 AAGIARVIQRLAQAERASRSGRGLGDLMVRHELLAIARQAARER 345 >gi|307297020|ref|ZP_07576836.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum L-1] gi|306877546|gb|EFN08774.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum L-1] Length = 345 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 124/344 (36%), Gaps = 11/344 (3%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 K + + + F+ YG D+ L + ++ + + L+ ++ + Sbjct: 9 EKALDAAGQGSAADCRFFLLYGPDEAGSTTLAKRLERAMGPDAER----IDLDGPTLRDD 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + +E + S+F K+ I I + E L L ++ + +I + +K + Sbjct: 65 PARLADEAAAFSMFGDKRWIRINGMGEE--SLPALTALLEAEAAGNPVIAVAGALKPTSK 122 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L K+A +A + Y + + G +S + + + GDR Sbjct: 123 LLKLALDHKQTMAFASYQPDAREAEQIAVAIAREGGLRLSSDLGRRIADLTNGDRTLMAG 182 Query: 187 ELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 E++KL Y T + + + D ++NA + G + Sbjct: 183 EVEKLILYLDAAPDRPREATGEALDALSADNPDSDAAPLVNAVLGGDLRGMHRELGRLAE 242 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + A+L L + LL I + S E ++ K + ++ ++ +RIW+ Sbjct: 243 AGTTMAAVLRPLLTRAMLLANIRADFDDSGR-LEGAVEAAGKAVFWKEKGVVTRQVRIWD 301 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ +R + L ++ +L IA+ A + Sbjct: 302 ATGIARVIQRLAQAERASRSGRGLGDLMVRHELLAIARQAARER 345 >gi|148284276|ref|YP_001248366.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str. Boryong] gi|146739715|emb|CAM79535.1| DNA polymerase III, delta subunit [Orientia tsutsugamushi str. Boryong] Length = 339 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 16/320 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79 YG+D GLI + K + +D L + + I +NS +L Sbjct: 21 RAIAVYGNDHGLIDYRCQEITKLFNANLRIYDYRELTEADFIFI----------LNSNNL 70 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 FS+++I+ I N + L++ + N N +I++ NE ++T R+ E + A Sbjct: 71 FSQREIVKIYNTPG--NINAALKKALTFNNQNFLIVL-GNEFSASSTTRQWFETQKYLAA 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + CY +N + L+ + + K+I+ EA GD+ NE+ KL YC + Sbjct: 128 LGCYTENSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCD 187 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+++ V I + + + +G N + + +P +L ++ + Sbjct: 188 TISKKEVNKCISTEILGTSDLMCIYFAKGIAMNFFKEVEKIRNNNIPDVWILRALIRYYI 247 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L I ++K +S E+ I+ + +I Q + N V TL+++ Sbjct: 248 NL-YIVLMKREHGVSIEQAIKSIQPSIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELS 306 Query: 320 ARKKKYLEKNIIFQTILYIA 339 + + NII L I Sbjct: 307 VKTTHHHINNIIEVVFLKIT 326 >gi|157803359|ref|YP_001491908.1| DNA polymerase III subunit delta [Rickettsia canadensis str. McKiel] gi|157784622|gb|ABV73123.1| hypothetical protein A1E_00875 [Rickettsia canadensis str. McKiel] Length = 323 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++ +++ + + NI++ +NS + F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSL--------NMLQTSIEYTELNIASLEILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I + ++ + L+ I+ ++ N + I E+ +++ RK E + A + Sbjct: 73 QKELIKVRSVGN--SIDQNLKIILSRDYINFPVFI-GEEMTSSSSFRKFFETEEYLAATA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D+++ + +I + + K ISKEA L A+L GD NE+ KL + + I Sbjct: 130 CYHDDEVKIERIILDKVGKTNKIISKEANAYLKAHLKGDHNLVCNEINKLIYFVHDRKEI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAIYFSKKDYSNFLQELDILKKQNINEVLMIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + ETL + + Sbjct: 250 -YIVLSKVKNGECLELAIKSLSPPIFYQYINDFTKIASSLSLAECLETLKLLQQAEVEYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|189183151|ref|YP_001936936.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str. Ikeda] gi|189179922|dbj|BAG39702.1| hypothetical protein OTT_0244 [Orientia tsutsugamushi str. Ikeda] Length = 339 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 16/320 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79 YG+D GLI + K + +D L + + I +NS +L Sbjct: 21 RAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEADFIFI----------LNSNNL 70 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 FS+++I+ I N + L++ + N N +I++ +E ++T R+ E + A Sbjct: 71 FSQREIVKIYNTPG--NINAALKKALTFNNKNFLIML-GSEFSASSTTRQWFETQKYLAA 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + CY ++ + L+ + + K+I+ EA GD+ NE+ KL YC + Sbjct: 128 LGCYTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCD 187 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I++Q V I + + + +G N + + +P +L ++ + Sbjct: 188 TISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILRALIRYYI 247 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L I ++K+ +S E+ I+ + I Q + N V TL+++ Sbjct: 248 NL-YIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELS 306 Query: 320 ARKKKYLEKNIIFQTILYIA 339 + + N+I L I Sbjct: 307 VKTTHHYINNMIEVVFLKIT 326 >gi|88606763|ref|YP_505775.1| DNA polymerase III, delta subunit [Anaplasma phagocytophilum HZ] gi|88597826|gb|ABD43296.1| DNA polymerase III, delta subunit [Anaplasma phagocytophilum HZ] Length = 338 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 49/331 (14%), Positives = 135/331 (40%), Gaps = 12/331 (3%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNIS--ITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ + YG+D I+ + + I +T + FS++ K + ++++ Sbjct: 17 AYGSVLLYGNDYS----RISHYSQKIINLLTCKEEFSVLRTEFSHASKEPEQLFVDLSTV 72 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +F +K ++++ + + + L + N C+ +I+++ E+ ++LR Sbjct: 73 PMFHQKSLVILTDA--KDSLSPDLRTAVDNLNPCHCYVIVQAKELSSTSSLRTYYNNHVM 130 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 AI+CY ++ ++ +++ E L Q + + E +L L + EL+KL Y Sbjct: 131 YAAIACYKED--NINNIVAEFLAENQVTYNTETFALLCNLLQTSNACIQPELEKLLLYLG 188 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ++ + +++ +++I A G + + AD L +K+ + ++ ++ Sbjct: 189 TKRNLSIEDLQESFAADFDPALDDICVAIADGNLKSFNRAADALLQNKIAAVLIIRSSIK 248 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F LE + + K S ++ + I L++ + +V+ L ++ Sbjct: 249 YFMTLEYL-LRKVRSGCDINTAVKSVQPPIFFRLVAQLKKHVSTVPYQMVQLILRRLHEA 307 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + ++++ + + + + Sbjct: 308 EVQCKLSDSSQESMFRYLMYSLILSIQQIRR 338 >gi|157828118|ref|YP_001494360.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932819|ref|YP_001649608.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. Iowa] gi|157800599|gb|ABV75852.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907906|gb|ABY72202.1| DNA polymerase III, delta subunit [Rickettsia rickettsii str. Iowa] Length = 324 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I E+ + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEELTSSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKNNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|94496573|ref|ZP_01303149.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58] gi|94423933|gb|EAT08958.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58] Length = 346 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 130/344 (37%), Gaps = 11/344 (3%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 K + + + F+ YG D+ L + ++ + + L+A ++++ Sbjct: 9 EKALDAPGQGAAANTRFFLLYGPDEAGSQALAKRLERAMGPQAER----IDLDAPTLRED 64 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + +E + S+F K+ I + + + L L ++ + +I + +K + Sbjct: 65 PARLSDEAAAFSMFGDKRWIRVNGIGDD--CLPALNALLDAEAAGNPVIAVAGALKPTSK 122 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L K+A +LA Y + + G +S + + ++ GGDR Sbjct: 123 LAKLALDHKGILACISYQPDGREAEQIAIGIARDGGLRLSSDLARRIVDLSGGDRALMAG 182 Query: 187 ELQKLSSY--CLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 E++KL Y D T + + + D + ++NA + G + Sbjct: 183 EIEKLILYLDAAPDRPAEATGEALDALSADNPETEVGPLVNAVLGGDLRAMHRELTALAQ 242 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + A++ L + LL I + S E + + + + ++ ++ +R+W+ Sbjct: 243 AGAAMAAVIRPLLTRAMLLATIRDAFDASGR-LEAAVDQAGRAVFWKEKGLVTRQVRLWD 301 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ +R + L ++ +L IA+ A + Sbjct: 302 APGIARVIQRLLAAERSSRGGRGLGDLMVRHELLAIARQAARER 345 >gi|91205921|ref|YP_538276.1| DNA polymerase III subunit delta [Rickettsia bellii RML369-C] gi|157826718|ref|YP_001495782.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389] gi|91069465|gb|ABE05187.1| DNA polymerase III delta subunit [Rickettsia bellii RML369-C] gi|157802022|gb|ABV78745.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389] Length = 330 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K F+++ + NIS+ +NS + F+ Sbjct: 21 KALLLYGPDKGYIDKICRHLVKK--------FNMLQTSIEYSDLNISSLEILLNSPNFFN 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I+ + + L+ I+ N N + I +I +++ RK E S+ +++ Sbjct: 73 QKELIRIKGVGN--SIDKNLKVILNDNYINFPVFI-GEDITSSSSFRKFFETEESLASLA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + ++ E L K I +EA L +L GD NE+ KL + + + Sbjct: 130 CYHDDEAKIEKIVLEKLAKCNKIIDREALIYLKNHLKGDHELVSNEINKLIYFVHDKQEV 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T +K+++ + ++ Q + + D + ++ ++ + L Sbjct: 190 TLNDIKEVLSSEIIANGSDLAMYFSQKNYVSFLKELDILKKQNINEVLMIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + + I+ I N + N +TL + + Sbjct: 250 -YIVLAKVKNGERVDSAIKSLSPPIFYQYINDFTKIANSLNLAECLKTLRILQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|238650454|ref|YP_002916306.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic] gi|238624552|gb|ACR47258.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic] Length = 324 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I E+ + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|225677392|ref|ZP_03788360.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590568|gb|EEH11827.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 338 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 139/340 (40%), Gaps = 16/340 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + +F++K + + +GSD ++ + + I + D +S+ V++ + Sbjct: 7 KVKRFLEKPD-----ALRGVLIHGSDNS----RVDFYVQEIIASL-DEYSVQVMDFAIVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K+ ++E+ + S+F+ KK+I + N+S + L+ ++ N H +++ + ++ N Sbjct: 57 KSPGLLFSELANISMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMTATDLPHN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + E I+CY D+ +L D+I L + E L + ++ Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241 +EL+KL Y E + ++ + ++++ +A + I ++D + Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AL+ F LE + + + +S + I + + + + L+ Sbjct: 235 QENFSPIALIRIISNYFLRLETVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 + +++ L K+ +K K I Q I +I T Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQQVICHITNT 333 >gi|15892161|ref|NP_359875.1| DNA polymerase III subunit delta [Rickettsia conorii str. Malish 7] gi|15619292|gb|AAL02776.1| unknown [Rickettsia conorii str. Malish 7] Length = 324 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ ++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVHSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I E+ + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|51473388|ref|YP_067145.1| DNA polymerase III subunit delta [Rickettsia typhi str. Wilmington] gi|51459700|gb|AAU03663.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 321 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 121/305 (39%), Gaps = 14/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLF 80 + YG DKG I ++ + KN+++ +L+++E + NI +F +NS + F Sbjct: 21 KALLLYGPDKGYIEKICTRLVKNLNM---------LLSSIEYEDLNILSFEILLNSHNFF 71 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +K++I I ++ + L+ I+ + N + I ++ + +++K E + A+ Sbjct: 72 GQKELIKIRSIGN--SLDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAAV 128 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 +CY D++ + +I L K ISKEA L +L GD +E+ KL + + Sbjct: 129 ACYHDDEAKIERIILAKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIYFVHDVHE 188 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT HV ++I + + N + D + ++ ++ + Sbjct: 189 ITLNHVLEVISSEITANGSNLAIYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLN 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L I + K + E I+ I N + +TL + Sbjct: 249 L-YIVLSKVKNGECLELAIKSLSPPIFYHNINDFINIAHALSLTECLKTLKLLQQAEVDY 307 Query: 321 RKKKY 325 + Sbjct: 308 KLNPA 312 >gi|157964254|ref|YP_001499078.1| DNA polymerase III subunit delta [Rickettsia massiliae MTU5] gi|157844030|gb|ABV84531.1| DNA polymerase III, delta subunit [Rickettsia massiliae MTU5] Length = 324 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I E+ + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEMISSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|34580809|ref|ZP_00142289.1| hypothetical protein [Rickettsia sibirica 246] gi|28262194|gb|EAA25698.1| unknown [Rickettsia sibirica 246] Length = 324 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 120/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ +++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVQSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I E+ + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T +V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNNVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLSL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|157825377|ref|YP_001493097.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford] gi|157799335|gb|ABV74589.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford] Length = 326 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 121/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + ++ NIS+ +NS + F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSLNMLQ------TCIEYADL--NISSVEILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + + L+ I+ + N + I EI + ++RK E + A++ Sbjct: 73 QKELIKIRSIGN--SLDNNLKTILSSDYINFPVFI-GEEITASGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILDKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V +I ++ + N + + + ++ ++ + L Sbjct: 190 TLNDVLKVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I ++K + + E I+ I N + + ETL + + Sbjct: 250 -YIVLLKVKNGVRLELAIKSLSPPIFYQYINDFTKIATSLSLTECLETLKLLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|15604063|ref|NP_220578.1| DNA polymerase III subunit delta [Rickettsia prowazekii str. Madrid E] gi|7388403|sp|Q9ZDX5|Y189_RICPR RecName: Full=Uncharacterized protein RP189 gi|3860754|emb|CAA14655.1| unknown [Rickettsia prowazekii] gi|292571783|gb|ADE29698.1| DNA polymerase III, delta subunit [Rickettsia prowazekii Rp22] Length = 321 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 116/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ KN+++ + ++ NI + +NS + F Sbjct: 21 RALLLYGPDKGYIEKICTYLIKNLNMLQS------SIEYEDL--NILSLDILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I + ++ + L+ I+ + N + I ++ + +++K E + ++ Sbjct: 73 QKELIKVRSIGN--SLDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAVVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I L K ISKEA L +L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIFFAHDVHEI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T HV ++I + + N + D + ++ ++ + L Sbjct: 190 TLNHVLEVISSEITANGSNLAIYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + + +TL + + Sbjct: 250 -YIVLSKVKNGECLEIAIKSLSPPIFYHNINDFTKIVHALSLTECIKTLKLLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|229586433|ref|YP_002844934.1| DNA polymerase III subunit delta [Rickettsia africae ESF-5] gi|228021483|gb|ACP53191.1| DNA polymerase III, delta subunit [Rickettsia africae ESF-5] Length = 324 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ +++++ + ++ NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVQSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I I + ++RK E + A++ Sbjct: 73 QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEAITSSGSIRKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLIYFVHDAREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + D + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLSL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|67459470|ref|YP_247094.1| DNA polymerase III subunit delta [Rickettsia felis URRWXCal2] gi|67005003|gb|AAY61929.1| DNA polymerase III, delta subunit [Rickettsia felis URRWXCal2] Length = 321 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 117/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++++ + E+ NIS+ +NS + F Sbjct: 21 RALLLYGPDKGYIEKIYKHLVKSLNMLQ------TSIEYSEL--NISSLEILLNSPNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I EI + + +K E + A++ Sbjct: 73 QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + + I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFIHDRREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V +I ++ + N + + + ++ ++ + L Sbjct: 190 TLNDVLKVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + S E I+ I N + + +TL + + Sbjct: 250 -YIVLSKIKNGESLELAIKSLSPPIFYQYINDFTKIANSLSLTECLQTLKLLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|239948156|ref|ZP_04699909.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922432|gb|EER22456.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 324 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG DKG I ++ K++ +++ + + NIS+ +NS++ F Sbjct: 21 RALLLYGPDKGYIEKICKHLVKSL--------NMLQTSIEYVDLNISSLEILLNSSNFFG 72 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++I I ++ + L+ I+ + N + I EI + + +K E + A++ Sbjct: 73 QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 CY D++ + +I + K ISKEA L A+L GD +E+ KL + ++ I Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFVHDEREI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T V ++I ++ + N + + + ++ ++ + L Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I + K + E I+ I N + + +TL + + Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPAIFYQYINDFTKIAGSLSLTECLKTLKLLQQAEVDYK 308 Query: 322 KKKY 325 Sbjct: 309 LNPA 312 >gi|114798351|ref|YP_762230.1| DNA polymerase III subunit delta [Hyphomonas neptunium ATCC 15444] gi|114738525|gb|ABI76650.1| DNA polymerase III, delta subunit [Hyphomonas neptunium ATCC 15444] Length = 343 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 110/341 (32%), Gaps = 13/341 (3%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + F ++ ++ + + D+GL F+ + VL+ I+K Sbjct: 8 AEGFARRPDPEVW----AVLAFSEDEGLAFDAGQALIAGWGGKPG--MDVTVLDDDAIKK 61 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN---HIIIIKSNEIK 122 + ++ + + SL + + + + L +II++ + Sbjct: 62 EPALLFDALEAVSLLGDSRAVRVRTSGDKIAALLAEAIAAGDKDPRRFAAKLIIEAGSLP 121 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + LR AE + + + + ++ +LL I A + +L G R Sbjct: 122 GKSKLRAAAEGAKRAACLQFFAEEDTDVASRVKTALLAEGAVIDPPALDAFVGDLPGHRA 181 Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + +E++KL+ Y + + V+ + I +NA + G A D Sbjct: 182 LANSEIEKLALYARGLGRPLNLEDVRALSATDVKQAISGAVNAALDGHPGAAQTALDKLS 241 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + ++L + + H + + K + P + L W Sbjct: 242 ENGTSGISILRSLQMEVLRMLSAHEKIAGGDGNPGKY---LRPPVWPSDWPAFRVRLGKW 298 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + +I + + ++ I +A+ A Sbjct: 299 PARRLMRVMERIHDAERQTKLAGPIGDPVVRLLINDLAKAA 339 >gi|84687978|ref|ZP_01015842.1| hypothetical protein 1099457000203_RB2654_15544 [Maritimibacter alkaliphilus HTCC2654] gi|84664010|gb|EAQ10510.1| hypothetical protein RB2654_15544 [Rhodobacterales bacterium HTCC2654] Length = 340 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 124/347 (35%), Gaps = 20/347 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+++ K + + + YG+D + + + K + + L + A ++ Sbjct: 7 EANRHFAKPAPDTTGT----LIYGTDAMRVALKRQDLLKNLLGEGAEEEMRLTRMLAGDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + + + + I + F + + +E+ + K+ L++ + +++ + Sbjct: 63 RADPAALSDAIKAQGFFPGPRAVFVEDATDVHGDKITQALDDW---QPGDAHVVVTGGNL 119 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG- 179 K LRK EK S AI Y D D I++ L I EA + L A Sbjct: 120 KPTGKLRKYFEKHPSAFAIGIYDDPMSR--DEIQDELRKAGLNQIDPEAMRDLEALARSL 177 Query: 180 DRIASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D R ++KLS Y L D L+T V + ++++++AT +G+ L Sbjct: 178 DPGDFRQTVEKLSLYKLGDPSLLTPDDVDACAPASTEAVLDDLLHATAEGRAGELGPLLT 237 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A + L F+ L E N + + R+ + Sbjct: 238 RLEAQGIAPTRLAIATTNHFRTLHMAASDPEGPNKGIFR----ARPPVHFKSRDRMTRQA 293 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACK 344 W + L I R + +I +T++ +A A + Sbjct: 294 SRWGAAKLETALDMIIEADLTLRSTSKAPQMALIERTLIRLAFMAAR 340 >gi|269958414|ref|YP_003328201.1| DNA polymerase III, delta subunit [Anaplasma centrale str. Israel] gi|269848243|gb|ACZ48887.1| DNA polymerase III, delta subunit [Anaplasma centrale str. Israel] Length = 350 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + +GSD G ++ + + I I + F + + L+ ++ + + Sbjct: 18 YGSVLLHGSDYG----RMSMYTQKILDRINRNSEFVIHKMEFLKANRDPEQLLVSLMTVP 73 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 +FSKK +IL+ + + + L I N+ + +II++ E+ +TL+ Sbjct: 74 MFSKKSLILLTDA--KDTLSADLRAAIEGMNMQHCYMIIQARELSGTSTLKGYYSSHKKF 131 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A+ CY + + ++ + L S ++L L + EL+KL Y E Sbjct: 132 AAVGCYKEE--DVSFIVADFLAKHGISYRHSTFKLLCTKLKNGSACLQPELEKLLLYLGE 189 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + + V+ + ++++ A G + +A+ D + +++ ++ L+ Sbjct: 190 QKSLAAEDVQKSLSTDVDPVLDDLCVAITDGNLGDALKHVDTLMQNRLSPILVIRSSLKY 249 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F LE + + S S + ++ + + L+ S + V+ L ++ Sbjct: 250 FMQLEYL-LRTTQSQASIDSALKALQPPVFFRLIPKLKRSAESVSYRTVQVILRRLLEAE 308 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + ++ + + + + + Sbjct: 309 IQCKLSDTSQEVVFKYLMCSLTAFVKRAKS 338 >gi|254292381|ref|YP_003058404.1| DNA polymerase III subunit delta [Hirschia baltica ATCC 49814] gi|254040912|gb|ACT57707.1| DNA polymerase III, delta subunit [Hirschia baltica ATCC 49814] Length = 334 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 127/331 (38%), Gaps = 19/331 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 ++ F+Q+ + V + +G D G++ + + + +V L+ E++ Sbjct: 7 KALNFVQRPKAGI----NVVLAFGEDLGVVSDAAQTLVQKWRKVENSELDIVRLHEDELK 62 Query: 65 KNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEI 121 K+ +++ SL K+I+ + N S K+++ +++I K + +I+++ E+ Sbjct: 63 KDPGLLTEHLSAVSLLGIKQILRVRLSNESIAKQLIAIVDQIATGKLYPENFLILEAGEL 122 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 KK++ LR + + D+ + + I L I + A + A L GDR Sbjct: 123 KKSSKLRTSFSTSPDTACLQFFADSDVETSEYIRIKLSDQNIQIDELALEQFAAELPGDR 182 Query: 182 IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + E++KLS Y + I +K I + +A + G I A D F Sbjct: 183 RLANAEIEKLSLYAFDLGRSIQPDDIKAICSTEQPRGADNAADAALAGDIDEANKSLDRF 242 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + + + L ++LL I + + R + L+ Sbjct: 243 LDAGGSAISALRTL--HYRLLRVIDAQSGA---------RFLRPPVFDRDRPAFNKMLKD 291 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNII 331 W+ + L + ++ + I+ Sbjct: 292 WDAARLNRALSTLYAAEKTCKQGGIPAEAIL 322 >gi|162447751|ref|YP_001620883.1| DNA polymerase III subunit delta [Acholeplasma laidlawii PG-8A] gi|161985858|gb|ABX81507.1| DNA polymerase III, delta subunit [Acholeplasma laidlawii PG-8A] Length = 315 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 116/263 (44%), Gaps = 17/263 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G LI E I ++ + D F++V L+A ++ I E+ + S FS Sbjct: 5 YLLVGQSAFLINEQIKTYQDKFKL---DQFNIVKLDA--LETEIEVINQELQTVSFFSDL 59 Query: 84 KIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+++IE+L + KVL + + + ++I+ E+ K++ L EK+T + Sbjct: 60 KMVVIEHLDGLTRYDDKVLSTFYKYLESPSSDIVLILTITELPKDHNLGSYLEKYTFIET 119 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I L+ I ES I ++ Q+++ D + E+ K+ Y ++ Sbjct: 120 IQSL--EGETLISYIRESFHKEGYQIEDKSIQLIIERTQNDLFSIHQEISKIKMYAYDEK 177 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 ++ + V ++ I A ++G I + + + D + +KMP+ + + Sbjct: 178 IVFVEDVDLLVTRNLEDNIFSFSTAYLKGNIKSYMQIYDDLVTNKMPTITIFN------H 231 Query: 260 LLEKIHIIKECSNISFEKIIQKT 282 L +H+I + ++ + + QKT Sbjct: 232 LFNTMHLIMQTKDLMEQGLNQKT 254 >gi|222475558|ref|YP_002563975.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma marginale str. Florida] gi|222419696|gb|ACM49719.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma marginale str. Florida] Length = 380 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 127/332 (38%), Gaps = 12/332 (3%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73 N S+ + +GSD ++ + + I + F + + L ++ Sbjct: 44 NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLRANRDPEQLLVS 99 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 + + +F +K ++L+ + + + L+ I+ + + +II++ E+ +TL+ Sbjct: 100 LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 157 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A+ CY + + ++ + L + S ++L L + EL+KL Sbjct: 158 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 215 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E ++ + V+ + +++I A G + + + AD + ++ + Sbjct: 216 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 275 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L+ F LE + + + +S + ++ + + L+ + + ++ L + Sbjct: 276 SSLKYFMQLEYL-LRAAQNQVSIDNALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 334 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + ++ + + +A + Sbjct: 335 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 366 >gi|254450348|ref|ZP_05063785.1| DNA polymerase III delta subunit [Octadecabacter antarcticus 238] gi|198264754|gb|EDY89024.1| DNA polymerase III delta subunit [Octadecabacter antarcticus 238] Length = 342 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 54/351 (15%), Positives = 131/351 (37%), Gaps = 26/351 (7%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64 ++ + +K N + YG D + + + K + + L ++ +++ Sbjct: 8 ANSYFRKPDPNGAG----ILIYGGDAMRVALKRQDVIKTLVGPNGEEEMRLTRMSGADLR 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 K+ + + I + F +++ +E ++ K ++ L++ + + +++ + ++ Sbjct: 64 KDPALLGDAIKAQGFFPGPRVVFVEEVTDVAAKAIIPALKDWVA---GDAQVVVTAGQLA 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLAN----L 177 ++LRK+ E S A Y D D IE +L + + I ++A ++ A Sbjct: 121 AKSSLRKLFESHPSAYAAGIYDDPP--TRDEIETALRVAGLNNIDRDAMDLIAALSREMA 178 Query: 178 GGDRIASRNELQKLSSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 GD R ++KL Y E +T V+ ++ +++I+NA K + Sbjct: 179 PGD---LRQTIEKLGLYMAGETAAVTVSDVEACAPLSNEAALDDILNAVADLKATEIGPI 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 A AL G ++ F+ L + + I + + +R+ + Sbjct: 236 LSRLYAQGTQPVALCIGAMRHFRQLHV--VASDPGGPLAG--IGRLRPPVFGPRRDRIVR 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACKNN 346 W + + L I R ++ ++ + + +A Sbjct: 292 QASTWGRFRLERALGTITDADLTLRSSSTAPDRALVERMFIRLAMLGRSRG 342 >gi|42520244|ref|NP_966159.1| hypothetical protein WD0364 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409982|gb|AAS14093.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 330 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 135/334 (40%), Gaps = 16/334 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + KF++K + + +GSD + + + N+ +S+ V++ + Sbjct: 7 KVKKFLEKPD-----ALRGVLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K+ S ++E+ + S+F+ KK+I + N+S + L+ ++ N H +++ +N++ N Sbjct: 57 KSPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMVANDLPYN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + E I+CY D+ +L D+I L + E L + ++ Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241 +EL+KL Y E + ++ + ++++ +A + I ++D + Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AL+ F LE + + + +S + I + + + + L+ Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 + +++ L K+ +K K I + Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327 >gi|255004676|ref|ZP_05279477.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma marginale str. Virginia] Length = 349 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 128/332 (38%), Gaps = 12/332 (3%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73 N S+ + +GSD ++ + + I + F + + L+ ++ Sbjct: 13 NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLKANRDPEQLLVS 68 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 + + +F +K ++L+ + + + L+ I+ + + +II++ E+ +TL+ Sbjct: 69 LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 126 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A+ CY + + ++ + L + S ++L L + EL+KL Sbjct: 127 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 184 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E ++ + V+ + +++I A G + + + AD + ++ + Sbjct: 185 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 244 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L+ F LE + + + +S + ++ + + L+ + + ++ L + Sbjct: 245 SSLKYFMQLEYL-LRAAQNQVSIDSALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 303 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + ++ + + +A + Sbjct: 304 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 335 >gi|56417193|ref|YP_154267.1| hypothetical protein AM1185 [Anaplasma marginale str. St. Maries] gi|56388425|gb|AAV87012.1| hypothetical protein AM1185 [Anaplasma marginale str. St. Maries] Length = 349 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 128/332 (38%), Gaps = 12/332 (3%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73 N S+ + +GSD ++ + + I + F + + L+ ++ Sbjct: 13 NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLKANRDPEQLLVS 68 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 + + +F +K ++L+ + + + L+ I+ + + +II++ E+ +TL+ Sbjct: 69 LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 126 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A+ CY + + ++ + L + S ++L L + EL+KL Sbjct: 127 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 184 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E ++ + V+ + +++I A G + + + AD + ++ + Sbjct: 185 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 244 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L+ F LE + + + +S + ++ + + L+ + + ++ L + Sbjct: 245 SSLKYFMQLEYL-LRAAQNQVSIDNALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 303 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + ++ + + +A + Sbjct: 304 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 335 >gi|160893074|ref|ZP_02073862.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50] gi|156865157|gb|EDO58588.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50] Length = 337 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 131/320 (40%), Gaps = 19/320 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 V++ YG + L+ + ++ ++ + F+ + +EI + Sbjct: 27 PVYLLYGDETYLVNQYRDKLLSAVTDRDDNMNFAKFAGEKTDPMEIIGFCE-------TM 79 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+ ++++L E KK + E I + +I+ +E+ K N L K +K Sbjct: 80 PFFADRRVVLAEGTGLFKKSCEEFAERIKELPDTSLILFVESEVDKRNKLYKTVDKLGEA 139 Query: 138 LAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 L C+ N+ L ++ K I+ +A + L+ + G D + +NE+ KL SY + Sbjct: 140 L---CFETPNEKTLAVWVKGMFKGEGKQITDDAIRSLIEHTGSDMNSIKNEIDKLISYTV 196 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T V+++ +I E+I+A + + AI L L ++ P+ +L + Sbjct: 197 DREAVTASDVENLCVGNSEGHIFEMIDAISRKQQDRAIHLYHELLENREPAMRILFLIAR 256 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ LL K + N ++ +K+ E R +++ +++ + Sbjct: 257 QYDLLLKTKMCL-AENKNYADTASVLGVPSWSVKK--YAEQCRNYSEQELKKIMEACQDT 313 Query: 317 IHLARKKKYLEKNIIFQTIL 336 + + + + + +L Sbjct: 314 DYKLKTSQA-SDVVAVEVLL 332 >gi|99035034|ref|ZP_01314830.1| hypothetical protein Wendoof_01000344 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 330 Score = 158 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 135/334 (40%), Gaps = 16/334 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + KF++K + + +GSD + + + N+ +S+ V++ + Sbjct: 7 KVKKFLEKPD-----ALRGVLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K+ S ++E+ + S+F+ KK+I + N+S + L+ ++ N H +++ +N++ N Sbjct: 57 KSPSLLFSELANASMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMVANDLPYN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + E I+CY D+ +L D+I L + E L + ++ Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241 +EL+KL Y E + ++ + ++++ +A + I ++D + Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AL+ F LE + + + +S + I + + + + L+ Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 + +++ L K+ +K K I + Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327 >gi|254439606|ref|ZP_05053100.1| hypothetical protein OA307_4476 [Octadecabacter antarcticus 307] gi|198255052|gb|EDY79366.1| hypothetical protein OA307_4476 [Octadecabacter antarcticus 307] Length = 342 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 123/333 (36%), Gaps = 22/333 (6%) Query: 24 FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG D + + + K + + L ++ +++K+ + + I + F Sbjct: 22 ILIYGGDPMRVALKRQDVIKMLVGPNGEEEMRLTRMSGADLRKDPALLGDAIKAQGFFPG 81 Query: 83 KKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ +E ++ K ++ L++ N + I++ + ++ ++LRK+ E S A Sbjct: 82 PRVVFVEEVTDVAAKAIIPALKDW---NAGDAQIVVTAGQLAAKSSLRKLFESHPSAYAA 138 Query: 141 SCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLAN----LGGDRIASRNELQKLSSYC 195 Y D D IE +L +I ++A ++ A GD R ++KL Y Sbjct: 139 GIYDDPP--TRDEIETALRDANINNIDRDAMDLITALSREMAPGD---LRQTIEKLGLYM 193 Query: 196 LEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + +T V+ ++ +++I+N K + A AL G Sbjct: 194 TGETAGVTITDVEACAPLSNEAGLDDILNVVADLKATEIGPILSRLYAQGTQPVALCIGA 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + F+ L + + S I + + +R+ + W + + L I Sbjct: 254 MHHFRQLHI--VASDPGGPSAG--IGRLRPPVFGPRRDRIVRQASTWGRIKLERALGTIT 309 Query: 315 HRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346 R ++ ++ + + +A Sbjct: 310 DADLTLRSANTAPDRALVERMFIRLAMLGRSRG 342 >gi|58698431|ref|ZP_00373341.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630216|ref|YP_002727007.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi] gi|58535054|gb|EAL59143.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592197|gb|ACN95216.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi] Length = 330 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 134/334 (40%), Gaps = 16/334 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + +F++K + +GSD + + + N+ +S+ V++ + Sbjct: 7 KVKRFLEKPDALSG-----VLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K S ++E+ + S+F+ KK+I + N+S + L+ ++ N+ H +++ ++++ N Sbjct: 57 KLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGHYVMMVASDLPYN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + E I+CY D+ +L D+I L + E L + ++ Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241 +EL+KL Y E + ++ + ++++ +A + I ++D + Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMLRFIRISDALIS 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AL+ F LE + + + +S + I + + + + L+ Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 + +++ L K+ +K K I + Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327 >gi|190570628|ref|YP_001974986.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019121|ref|ZP_03334928.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356900|emb|CAQ54278.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995230|gb|EEB55871.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 339 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 141/332 (42%), Gaps = 17/332 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + KF++K + + +GSD + + F + I + +S+ V++ + Sbjct: 7 KVKKFLEKPD-----TLSGVLIHGSDNSKV----DIFVQEIIANLN-EYSVQVMDFAVVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K+ ++E+ + S+F+KK+++ + N+S + L I+ NI +H I++ +N++ + Sbjct: 57 KSPGLLFSELANISMFTKKRLVKLINVSG--SISKELRNILDHNIGDHYIVMIANDLPYS 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 +T + E I+CY D+ +L D+I L + E L + ++ Sbjct: 115 STTKSYMESSKIFGVITCYKDSGSNLCDIISSYLKQNDIECTSEIIYHLQSYFNHSKLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFF-L 241 +EL+KL Y + + + + ++ + +A + + I ++D L Sbjct: 175 YSELEKLVLYLGKRKDLKLADIDLCFSTSGNDYVTLDNLCSAIVSKDMGQFIKISDVLIL 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AL+ F LE + ++ + + ++ + I + + + + L+ Sbjct: 235 QENFSPIALIRIISNYFLRLESVLLLIQ-NGMNEQAAIDQLSPPLFFKQLQSFKSHLKSL 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333 + +++ L + ++ L+ +IFQ Sbjct: 294 QLSELKKILENLMSLEVTCKRTD-LDHKMIFQ 324 >gi|260432315|ref|ZP_05786286.1| DNA polymerase III, delta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260416143|gb|EEX09402.1| DNA polymerase III, delta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 342 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 123/351 (35%), Gaps = 25/351 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + K + + YG+D + + + T + L + ++ Sbjct: 7 EADGYFSKPDPDKTG----LLIYGADAMRVALKRQQVLAALLGPTAEEEMRLTRMPGADL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 + + + + + + F + + +E+ + V + + + II+ + ++K Sbjct: 63 RGDRAMLLDAVKAVGFFPGPRAVFVEDATD--SVAPAILTALEDWAPGDAQIIVTAGQLK 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQIL----LANL 177 ++ LRK E + A+ Y D IE +L + I +++ +L Sbjct: 121 ASSKLRKAFEAHRNAYAVGIYDDPPSRAE--IERALAQAGLTDIPRDSMAMLGDLAAELS 178 Query: 178 GGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 GD + L+KL+ Y D +T + ++ ++ +++++N +G+ L Sbjct: 179 PGDFAQT---LEKLALYKRGDGTALTVEDIEACAPQSNEAALDDVLNVVAEGRAPEIGPL 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 A L G + F+ L + I K I +R+ + Sbjct: 236 IRRLQAQGTNPVTLCIGATRHFRTL----YACASDPGGAAQGIGKLRPPIYGKRRDRILR 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W ++ L + R + ++ + ++ IA A Sbjct: 292 QAQAWGAQKLQTALTVLTDTDLSLRSAGQTAPAMALVERALIRIAMLARSR 342 >gi|58584436|ref|YP_198009.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418752|gb|AAW70767.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 336 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 144/338 (42%), Gaps = 17/338 (5%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + KF++K LS + +G+D + + ++S +S+ +++ + Sbjct: 7 KVKKFLEKP---DILSG--VLIHGNDNSKVDFFTQEIVASLSE-----YSVQMMDFAMVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K+ ++E+ + S+F+ KK+I + N++ + L+ ++ N H +I+ + ++ N Sbjct: 57 KSPGLLFSELANISMFTSKKLIKLINVTG--NISKELKNVLDYNAGGHYVIMIATDLSYN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 +T++ E + I+CY ++ +L D+I L + E L + + Sbjct: 115 STIKSYIESSKTFGVIACYKNSGSNLYDIISSYLKRNDIKYTNEIIYHLQSYFNYSNLPI 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYI--EEIINATIQGKIYNAIMLADFF-L 241 +EL+KL Y E + ++ + Y+ + + +A + N I ++D L Sbjct: 175 HSELEKLVLYLGERKDLKPADIELCLSTFSNDYVTPDNLCSAIANKDMANFIKISDTLIL 234 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 L+ F LEK+ + + ++ + I + + + + L+I+ Sbjct: 235 QENFSPIGLIRIISNYFLSLEKVLLSIQ-GGMNEQVAIDQLNPPLFFKQLQSFKSHLKIF 293 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + +++ L + +K L+ +IFQ L +A Sbjct: 294 QLSELKKILESLISLEITCKKTD-LDHRMIFQHALQMA 330 >gi|254456431|ref|ZP_05069860.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] gi|207083433|gb|EDZ60859.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. HTCC7211] Length = 330 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 133/319 (41%), Gaps = 10/319 (3%) Query: 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 F + + +FYG ++GL + N KN ++ EI +N + F + Sbjct: 13 FDQNKLILFYGKNEGLKNDSTNNLLKNKE-------NISKYEEKEILENTNIFLENVFCK 65 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 SLF +KII+I+ ++ + + EEI K I + III ++ ++K + LR EK Sbjct: 66 SLFENEKIIIIKRVTDKILKII--EEIEEKKIEDLKIIINADILEKKSKLRSFFEKSREH 123 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++ YPD L L + SIS +++ GDR NEL K+ + Sbjct: 124 VCVAFYPDTNQVLSKLTYNFFNQKKISISPANINLIVNKCNGDRETLFNELDKIEYFSKS 183 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE+ + + I ++I+ + I + + + FL K Sbjct: 184 GKKITEESIIKLTNLIENHSISDLIDNCLAKNKKKIINILNENNFGNEDCIIITRTFLLK 243 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + + K+ SN + + I + I + I ++ + W +++ ++K++ Sbjct: 244 SKKILKLCSEF-KSNKNIDLTISSAKPPIFWKDKEITKQQIYKWTPENIKKLIYKLNEIE 302 Query: 318 HLARKKKYLEKNIIFQTIL 336 L +K N+I IL Sbjct: 303 LLIKKNINNSINLITDFIL 321 >gi|262277796|ref|ZP_06055589.1| putative DNA-directed DNA polymerase III [alpha proteobacterium HIMB114] gi|262224899|gb|EEY75358.1| putative DNA-directed DNA polymerase III [alpha proteobacterium HIMB114] Length = 334 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 11/324 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 + LF + + + YG + L E+ K I + F + E+ K+I N + Sbjct: 11 EKLFSDYKINLIYGENFHLKTEI---LSKLTQIFKENEFKTKFIKEDELLKDIEILDNYL 67 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 N SLF +K+I++I+ S D L + I + + +I+ ++ + K ++LR AEK Sbjct: 68 NQDSLFGEKEILIIQEAS------DKLLDYINFSEIDKKLILVTDNLTKKSSLRNKAEKE 121 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I+CY D++ L L+ L + EA L +R + L+KL Sbjct: 122 KIISCIACYEDDEKTLQSLLRNGLTKLDIKVPYEAIDQLFNINKLNRNDINSGLEKLELI 181 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +D + + + T EI NA + G + F + + +L Sbjct: 182 T-KDKKLDSESFSSLFNTTSSFDAFEISNALLSGDKKALNKILSSFYHFSINFNEVLGPL 240 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 K L I+ E ++ + I ++NI+Q L WNKN + L KI+ Sbjct: 241 KYKINKLIDIYEYNENETK-ITVLVDTYKPPIFWKEKNIIQTQLSKWNKNELDTLLDKIN 299 Query: 315 HRIHLARKKKYLEKNIIFQTILYI 338 L + + + I + +L I Sbjct: 300 EIEILCKLNYEIAETIFNKFLLDI 323 >gi|255263399|ref|ZP_05342741.1| DNA polymerase III, delta subunit [Thalassiobium sp. R2A62] gi|255105734|gb|EET48408.1| DNA polymerase III, delta subunit [Thalassiobium sp. R2A62] Length = 340 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 51/337 (15%), Positives = 122/337 (36%), Gaps = 16/337 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 K S + +G+D + I + L ++ E++K+ + + Sbjct: 13 KKPDPSKTGLLIFGADPMRVAGRRQEVIAALIGPQGEEEMRLTRMSGSELRKDPAMLNDA 72 Query: 74 INSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 I + S F ++ +E+++ K + L++ + II+ + ++ +TLRK+ Sbjct: 73 IKAQSFFPGPRVAFVEDVTDAMSKFIATALQDW---QDGDAQIIVTAGQLTAKSTLRKMF 129 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQ 189 E ++ A+ Y D +E +L ++A + LLA D R ++ Sbjct: 130 EGHSNAFAVGLYDDPPSREE--VEATLRDAGVKTDDRDAMEALLALSRALDPGDFRQTVE 187 Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL Y D ++ ++ + +++++N + + + +A Sbjct: 188 KLGLYKRGDDTPVSVTDIEACAPTSIEADLDDVLNIVAEARAVEIGPIMAKLVAQGTNPV 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L G + F+ L + S +Q+ + ++R+ + W + Sbjct: 248 TLCIGATRHFRTLHT--AASDPGGPSAG--VQRLRPPVFGLRRDRVIRQASKWGLARLET 303 Query: 309 TLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACK 344 L + R + +I + + +A A + Sbjct: 304 ALTVLTDTDLQLRSSSRAPQMALIERAFIRLAMLAAR 340 >gi|148555759|ref|YP_001263341.1| DNA polymerase III subunit delta [Sphingomonas wittichii RW1] gi|148500949|gb|ABQ69203.1| DNA polymerase III, delta subunit [Sphingomonas wittichii RW1] Length = 340 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 125/342 (36%), Gaps = 13/342 (3%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 IQ++ + + + YG D+ L + K + + L +++++ + Sbjct: 8 IQRALDRPDPAVRLILLYGPDESGSRALAARIDKAMGAEAER----IDLAGAQLKEDPAR 63 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E S SLF + I ++ E ++D + ++ + +++ + ++K+ L K Sbjct: 64 LADEAASISLFGGARHIRVDPAGDE--IIDAAQALLEAASGGNPVVVIAGNLRKDAKLVK 121 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +A LA + Y + + + A Q ++A DR EL+ Sbjct: 122 LALASPMALAFASYLPEGRAADQVAVDIARELGLRLDPRAAQAIVAATNADRALIARELE 181 Query: 190 KLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 KL+ + + + I + I++A + G+ A A+ L Sbjct: 182 KLALFLDASPDDPKPADAAAFETIGAVNDESDLSAIVDAVMGGRPEQA--AAELALIGAP 239 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + L++ + + + S + ++ K I + ++ L+ W+ + Sbjct: 240 EAIGAVRAVLRRLAQIAPLRAEV-AAGQSVDAVMAGAGKAIFWKDQKVVAGLLQRWSPDR 298 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + ++ ++ +I + +L IA+ A Sbjct: 299 IATATTRLAALERAYKRSGSPGMILIGEELLTIARVAASARR 340 >gi|254464990|ref|ZP_05078401.1| DNA polymerase III, delta [Rhodobacterales bacterium Y4I] gi|206685898|gb|EDZ46380.1| DNA polymerase III, delta [Rhodobacterales bacterium Y4I] Length = 342 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 117/350 (33%), Gaps = 23/350 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + K + YG+D + + + + L L ++ Sbjct: 7 EADGYFAKPDPGKTG----ILIYGADAMRVSLKRQQVLAALLGPGAEEEMRLSRLPGADL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F + + +E + + + + + I++ + ++K Sbjct: 63 RKDPAQLLDAVKAVGFFPGVRAVFVEG-ANDTATPAIIAALEEWQPGDAQIVVTAGQLKA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 + LRK E ++ A Y D IE L + ++ L Sbjct: 122 TSKLRKAFEGHSNAYAAGIYDDPPSRAE--IERILGEAGIRDVPGDSMSALTDIANDTGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD SR ++KL+ Y D ++ + + + + +++++N +G+ L Sbjct: 180 GD--FSRM-IEKLALYKHGDSSPLSLEDIGAVAPQSTEAALDDVLNVVAEGRSAEIGPLI 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A + L G + F+ L + + I + + +R+ + Sbjct: 237 RRLQAQGTNAVTLCIGATRHFRTL----YTIAGAPGGPAQGISQLRPPLYGKRRDRMLRQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W N + L I R + ++ + ++ +A Sbjct: 293 AQNWGANRLETALTIITDTDLALRSAGQTAPALALMERALIRLAMLGRAR 342 >gi|259417127|ref|ZP_05741046.1| DNA polymerase III, delta subunit [Silicibacter sp. TrichCH4B] gi|259346033|gb|EEW57847.1| DNA polymerase III, delta subunit [Silicibacter sp. TrichCH4B] Length = 342 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 119/350 (34%), Gaps = 23/350 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + + + YG+D + + + + L + A ++ Sbjct: 7 EAEGYFARPDPGKTG----LLIYGADAMRVSLKRQQMLAALLGPGAEEEMRLTRMPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F + + +E+ + + + + I++ + ++K Sbjct: 63 RKDPAQLLDAVKAVGFFPGIRAVFVED-ANDTATPAITTALQEWQPGDAQIVVTAGQLKA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 ++ LRK E T+ A Y D IE L + ++ L Sbjct: 122 SSKLRKAFETHTNAYATGIYDDPPSRAE--IERILGEAGMRDVPGDSMSALTDIANEIGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD SR ++KLS Y D +T + + + + +++++N +G+ + + Sbjct: 180 GD--FSRM-IEKLSLYKHRDSTPLTLEDIGAVAPQSTEAALDDLLNVVAEGRSTDIGPVL 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A + L G + F+ L + I + +R+ + Sbjct: 237 RRLQAQGTNAVTLCIGATRHFRTL----YTIAAHPGGPAQGIGGLRPPLYGKRRDRMLRQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W ++ L + R + + + + ++ +A A Sbjct: 293 AQGWGAQKLQNALTILTDTDLQLRSAGQSAPAQALTERAMIRLAMLARSR 342 >gi|254460162|ref|ZP_05073578.1| DNA polymerase III, delta [Rhodobacterales bacterium HTCC2083] gi|206676751|gb|EDZ41238.1| DNA polymerase III, delta [Rhodobacteraceae bacterium HTCC2083] Length = 341 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 128/352 (36%), Gaps = 21/352 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59 ++ E+ + K S + YG D I + I + L + Sbjct: 3 LSAREASGYFAKPDA----SKTGLLIYGPDAMRIALKRQQVIAALIGSKGEEEMRLTRIP 58 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIK 117 A +++K+ + + + + S F ++ +E+ K + LEE + II+ Sbjct: 59 AADLRKDPAALIDAMTAQSFFPGPRVAFVEDAGDGLSKVIAPALEEW---RNGDAQIIVT 115 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLAN 176 + ++ + LRK+ E ++ A+ Y D IE L + ++ ++ L A Sbjct: 116 AGQLNARSALRKLFEGHSNAFAVGIYDDPPSRAE--IEAELTRAKITMPERDVMDDLTAL 173 Query: 177 LGG-DRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 D R L+KL+ Y L D ++ + + + + ++++IN + + Sbjct: 174 SKDLDPGDFRQTLEKLALYKLNDPTLLSSEDIANCAPTSTEAGLDDVINIVAEARSGEIG 233 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 + A + AL L+ F+ L + I K + +R+ + Sbjct: 234 PIMRKLQAQGVQPVALCIATLRHFKTL----YAAASDPGGAAQGIGKLRPPVFGPRRDRM 289 Query: 295 QESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILYIAQTACK 344 + W + + L I R + E ++ + ++ +A A K Sbjct: 290 LRQAQGWGIHNLEAALSLIVDTDLKLRSASQHAPEMALVERCLIRLAMMARK 341 >gi|99079884|ref|YP_612038.1| DNA polymerase III, delta subunit [Ruegeria sp. TM1040] gi|99036164|gb|ABF62776.1| DNA polymerase III, delta subunit [Ruegeria sp. TM1040] Length = 342 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 118/351 (33%), Gaps = 25/351 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + + + YG+D + + + + L + A E+ Sbjct: 7 EAEGYFARPDPGKTG----LLIYGADAMRVSLKRQQMLAALLGPGAEEEMRLTRMPASEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +K+ + + + + F + + +E+ + + + I++ + ++K Sbjct: 63 RKDPAQLLDAVKAVGFFPGIRAVFVEDA--NDSATPAITTALEAWQPGDAQIVVTAGQLK 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL---- 177 ++ LRK E T+ A Y D IE L + ++ L Sbjct: 121 ASSKLRKAFETHTNAYATGIYDDPPSRAE--IERILSEAGVRDVPGDSMSALADIANDIG 178 Query: 178 GGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 GD SR ++KLS Y ++ +T + + + + +++++N +G+ + + Sbjct: 179 PGD--FSRM-IEKLSLYKNGDNSPLTLEDIDAVAPQSTEAALDDLLNVVAEGRSADIGPV 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 A + L G + F+ L + I + +R+ + Sbjct: 236 LRRLQAQGTNAVTLCIGATRHFRTL----YTIAAHPGGAAQGIGGLRPPLYGKRRDRMLR 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W ++ L + R + + + ++ +A A Sbjct: 292 QAQGWGAQKLQNALTILTDTDLQLRSAGQSAPALALTERAMIRLAMLARAR 342 >gi|254477238|ref|ZP_05090624.1| DNA polymerase III, delta [Ruegeria sp. R11] gi|214031481|gb|EEB72316.1| DNA polymerase III, delta [Ruegeria sp. R11] Length = 342 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 52/350 (14%), Positives = 124/350 (35%), Gaps = 23/350 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + + + YGSD + + + T + L + A ++ Sbjct: 7 EAEGYFARPDSGKTG----ILIYGSDAMRVSLKRQQMLAALLGPTAEEEMRLTRMPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F + + +E+ + + + + + I++ + ++K Sbjct: 63 RKDPAQLMDAVKAVGFFPGIRAVFVED-ANDTATPAIISALEAWQPGDAQIVVTAGQLKA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 + LRK E + A Y D IE L Q + ++ L+ Sbjct: 122 TSKLRKAFEGHGNAYATGIYDDPPSR--SEIERILSEAQIRDVPGDSMSALVDIANDIGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD SR ++KL+ Y ED +T ++ + + +++++N +G+ L Sbjct: 180 GD--FSRM-VEKLALYKYEDSSPLTLDDIQAVAPQSTEAALDDMLNIVAEGRGAEIGPLM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A + L G + F+ L I + + I + +R+ L Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRDRLLRQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W + L + R + ++ + ++ +A+ + N Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSRVN 342 >gi|126738685|ref|ZP_01754390.1| hypothetical protein RSK20926_09472 [Roseobacter sp. SK209-2-6] gi|126720484|gb|EBA17190.1| hypothetical protein RSK20926_09472 [Roseobacter sp. SK209-2-6] Length = 342 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 116/340 (34%), Gaps = 19/340 (5%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + + YG+D + + + + L + E++K+ + + Sbjct: 13 AKPDPAKTGLLIYGADAMRVALKRQQMLAALLGPGAEEEMRLSRMAGGELRKDPALLLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + F + + +E + + L + + I++ + ++K + LRK E Sbjct: 73 VKAVGFFPGARAVFVEE-ANDTAAPAILAALEDWQPGDAQIVVTAGQLKATSKLRKGFEG 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNEL 188 ++ A+ Y D IE L + ++ L GD SR + Sbjct: 132 HSNAYAMGIYDDPPSRAE--IERILGEAGIREVPSDSMSALTDIANDIGPGD--FSRM-V 186 Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +KLS Y D ++ + ++ + + +++++N +G+ L A + Sbjct: 187 EKLSLYKHGDSAPLSLEDIQAVAPQSTEAALDDVLNVVAEGRTPEIGPLMGRLQAQGTNA 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L G + F+ L + + I + +R+ + + W ++ Sbjct: 247 VTLCIGATRHFRTL----YSVAAAPGGPAQGIGSLRPPLYGKRRDRVLRQAQNWGAERLQ 302 Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + L + R + ++ + ++ ++ Sbjct: 303 KALTLLTDTDLQLRSAGQTAPALALMERALIRLSMLGRAR 342 >gi|119385491|ref|YP_916547.1| DNA polymerase III, delta subunit [Paracoccus denitrificans PD1222] gi|119375258|gb|ABL70851.1| DNA polymerase III, delta subunit [Paracoccus denitrificans PD1222] Length = 342 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 40/344 (11%), Positives = 117/344 (34%), Gaps = 16/344 (4%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +++ + + + +G D + + K + + L + +++K+ Sbjct: 10 RYLARPDP----TRPALLLHGQDAMRVALKRAEAVKALVGEGAEEEMRLTRIPGADLRKD 65 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + + + + F ++++ + + + + I + +I++ + K++ Sbjct: 66 PAALLDAVKAVGFFPGQRVV-LVDDAPDAAAPAVASAIAEWKPGDAVIVVAGGALGKSSA 124 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIAS 184 LRK+ E + + Y D + I L + ++A + L+A D Sbjct: 125 LRKLFEPHPAAVTAPIYDDPPG--EEEIGRWLKDAGLREVPRDAMRDLMALSRALDPGDF 182 Query: 185 RNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 R ++K+ Y D +T + + T ++E+I+ +G+ L Sbjct: 183 RQTVEKIGLYKHGDPEPLTPAEIAALAPATIEAEVDELIDCVAEGRAREFGTLMRRIEGQ 242 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 L L+ F+ L + + + + +R+ + + W Sbjct: 243 GTVPVTLCIAALRHFRALHA--GASDPGGPGAG--LSRLRPPVFGPRRDRMIRQAQDWGM 298 Query: 304 NLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACKNN 346 + + +H++ + R ++ + +L + Sbjct: 299 RALEDAIHQLIETDLVLRSSSRAPAMALMERMLLRLCMMPRGGR 342 >gi|163739860|ref|ZP_02147267.1| DNA polymerase III, delta [Phaeobacter gallaeciensis BS107] gi|161386894|gb|EDQ11256.1| DNA polymerase III, delta [Phaeobacter gallaeciensis BS107] Length = 342 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 123/348 (35%), Gaps = 23/348 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + K F+ YG D + + + T + L + A ++ Sbjct: 7 EADGYFAKPDPGKTG----FLIYGPDAMRVSLKRQQMLAALLGPTAEEEMRLTRMPAADL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F + + +E+ + + + + + II+ + ++K Sbjct: 63 RKDPALLMDAVKAVGFFPGIRAVFVED-ANDTAAPAVIAALEGWQQGDAQIIVTAGQLKA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 ++ LRK E + A Y D IE L + + ++ L+ Sbjct: 122 SSKLRKAFEGHRNAYATGIYDDPPSR--GEIERILGTARIRDVPGDSMSALVDIANEIGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD SR ++KL+ Y ED +T ++ I + +++++N +G+ L Sbjct: 180 GD--FSRM-VEKLALYKYEDSTPLTLDDIQAIAPQSTEAAVDDMLNIVAEGRGAEIGPLM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A + L G + F+ L I + + I + +R L Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRERLLRQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTAC 343 + W + L + R + ++ + ++ +A+ + Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSR 340 >gi|163743395|ref|ZP_02150775.1| hypothetical protein RG210_07825 [Phaeobacter gallaeciensis 2.10] gi|161383389|gb|EDQ07778.1| hypothetical protein RG210_07825 [Phaeobacter gallaeciensis 2.10] Length = 342 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 23/348 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + K + YG D + + + T + L + A ++ Sbjct: 7 EADGYFAKPDPGKTG----LLIYGPDTMRVSLKRQQMLAALLGPTAEEEMRLTRMPAADL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F + + +E+ + E + + + II+ + ++K Sbjct: 63 RKDPALLMDAVKAVGFFPGIRAVFVED-ANETAAPAVIAALEAWQQGDAQIIVTAGQLKA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 + LRK E + A Y D IE L + + ++ L+ Sbjct: 122 TSKLRKAFEGHRNAYATGIYDDPPSR--GEIERILGDARIRDVPGDSMSALVDIANEIGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD SR ++KL+ Y ED +T ++ I + +++++N +G+ L Sbjct: 180 GD--FSRM-VEKLALYKYEDSAPLTLDDIQAIAPQSTEAAVDDVLNIVAEGRGAEIGPLM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A + L G + F+ L I + + I + +R+ L Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRDRLLRQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTAC 343 + W + L + R + ++ + ++ +A+ + Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSR 340 >gi|87201229|ref|YP_498486.1| DNA polymerase III, delta subunit [Novosphingobium aromaticivorans DSM 12444] gi|87136910|gb|ABD27652.1| DNA polymerase III, delta subunit [Novosphingobium aromaticivorans DSM 12444] Length = 340 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 46/328 (14%), Positives = 121/328 (36%), Gaps = 12/328 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +F F G D+ + N+ + V L E++++ +E S SLF Sbjct: 20 RIFYFCGPDEAGASDAANRIAAMLGEAEK-----VELTGAELRRDPVKLADEARSVSLFG 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++II + +T + ++ ++ + ++I + + + K+ E T + Sbjct: 75 DRRIIHVR--ATGDDAFEAVDTLVASPVEGWPVLIVATSATDKSRIAKLLENRTDAMVGM 132 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LE 197 +P + + + + +++ + + + + D +R+E++K++ Y Sbjct: 133 FHPPDMKSVAGAVRDMADAAGVNLTGDLAERIARSTALDTRMARSEIEKIALYLDASPQA 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + + +I + + ++NA + G + + LL F ++ Sbjct: 193 RRTADAEVLDEICAVSEDDSLMPVVNAVLGGDVRKLSSELARMREVGLNPVGLLLAFERR 252 Query: 258 FQLLEKIHIIK-ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 L ++ + S+I+ + + + R L + LR W + L ++ Sbjct: 253 ATQLAQLAGRMGDRSDINAFMEQETAARRVFFRDRPDLTQQLRRWRGPRLARLLERLAQL 312 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344 + ++ Q + IA+ A + Sbjct: 313 HRTLMADNRNGELVLAQGLAEIARAAAR 340 >gi|114769848|ref|ZP_01447458.1| hypothetical protein OM2255_09776 [alpha proteobacterium HTCC2255] gi|114549553|gb|EAU52435.1| hypothetical protein OM2255_09776 [alpha proteobacterium HTCC2255] Length = 340 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 128/344 (37%), Gaps = 16/344 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59 +A +++ + N H + YG+D + K I + L ++ Sbjct: 3 LAGDKANNYFSNPDAN----HTSILIYGADSMRVALRRQELLKSLIGDNAEEEMRLTRVS 58 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118 A +++K+ + + + ++ F + + +E+ + + +++ + + +++ + Sbjct: 59 ASDLRKDPALLLDGLKASGFFPGLRAVFVEDATD--TIAAIIDKAMQDWQKGDAFLVLTA 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ + LRK E + + +AI Y D ++I + + +AK+ L+A Sbjct: 117 GQLNARSKLRKTIENYNNSVAIGIYNDPPNE-KEIISTASKHNLNNFDNDAKKELIALGR 175 Query: 179 G-DRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 D + L+KLS Y +D IT ++ T ++E IN + + Sbjct: 176 SLDPGDFQQTLEKLSLYKFKDDTVITSTDIQSCAPVTIDAALDEAINIIADARSDEVGPI 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + L + F+ L + ++ + + + + +++ + Sbjct: 236 LNRLFGQGTNPTTLCIAATRHFRNL----YLAASHSLGPDVALSRARPPVFGHRKDRMVR 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339 R W + + L + + R + I+ + + I+ Sbjct: 292 QARGWGGIRLEKALGVLINTDLSLRSSSKAPAQAILERAFIRIS 335 >gi|126736213|ref|ZP_01751956.1| DNA polymerase III, delta [Roseobacter sp. CCS2] gi|126714379|gb|EBA11247.1| DNA polymerase III, delta [Roseobacter sp. CCS2] Length = 340 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 40/335 (11%), Positives = 123/335 (36%), Gaps = 12/335 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + LSH + +G+D + + + + L +NA +++K+ + + Sbjct: 13 RQPDLSHTALLIFGADPMRVADKRQQVINAMVGPQGEEEMRLTRINAADLRKDPALLDDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 I + F ++ +E+ + + + + ++I + ++ + LRK+ E Sbjct: 73 IKAQGFFPGHRVAFVEDATDGLSKVIA-AALSDWQAGDAQVVITAGQLTAKSALRKVVEG 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASRNELQKL 191 ++ ++I Y + + +E++L ++ L++ + R ++K+ Sbjct: 132 HSNAVSIGLY--DAPPTIADVEQALKDAGVIQPERDVMDTLMSLANSLEPGDFRQMIEKV 189 Query: 192 SSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 S Y D ++ + + + +++++ G+ L A + L Sbjct: 190 SLYKRGDDSPLSIADLTANAPQSAEVDVDDVLEIVTTGQADRLGPLLRNLYAQGVTPVTL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 G ++ F+ L + + + + + +R+ + W ++ + + L Sbjct: 250 SIGAMRHFRRLHV--VASDPGGPAAGA--GRLRPPVFGPRRDKMVGQASHWGRDRLEKAL 305 Query: 311 HKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344 + R ++ + ++ +A A + Sbjct: 306 TALTDVDLQLRSANTAPPNALMERVLIRLAMLARR 340 >gi|126724366|ref|ZP_01740209.1| hypothetical protein RB2150_11061 [Rhodobacterales bacterium HTCC2150] gi|126705530|gb|EBA04620.1| hypothetical protein RB2150_11061 [Rhodobacterales bacterium HTCC2150] Length = 341 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 128/354 (36%), Gaps = 25/354 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59 +A E+ +F K ++ + YG+D + + + I + + L + Sbjct: 3 LAGREAARFFAKPDPSVTG----ILIYGADAMRVALKRQDIIASLIGPSGEEEMRLSRIP 58 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118 A E++K+ + + + + F ++ +E+ + ++ ++ + I++ + Sbjct: 59 AAELRKDPAMLSDALKAQGFFPGPRVAFVEDAGD--GLTAAIKSALLDWQPGDAQIVVTA 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANL 177 ++ ++LRK E S A Y D + IE L I A L + Sbjct: 117 GQLAARSSLRKYFETHKSAFAAGIYDDPP--TRESIEADLKSAGVGQIDNSAMTDLTSLA 174 Query: 178 ----GGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 GD + ++KL+ Y D ++ + + +T ++++++ + + + Sbjct: 175 RDLQPGD---FKQTMEKLALYKHGDKSPVSSADIDAVSPNTVEAALDDVLHVVAELRTGD 231 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 L +A + L G + F+ L + + + + + +R+ Sbjct: 232 IAPLMRRLVAQGVQPVGLCIGATRHFRTLHA--AASDPGGVQSG--LSRVRPPVFGPRRD 287 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE--KNIIFQTILYIAQTACK 344 + + W + + L + R + ++ + ++ ++ + Sbjct: 288 RMSKQASNWGPHRLEAALAMLLDTDLELRSAGQVAPQMALVERALIRLSMMGKR 341 >gi|56698257|ref|YP_168630.1| hypothetical protein SPO3434 [Ruegeria pomeroyi DSS-3] gi|56679994|gb|AAV96660.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 342 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 46/350 (13%), Positives = 116/350 (33%), Gaps = 23/350 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ + + + +G+D I + + + L + E+ Sbjct: 7 EADGYFARPDAGKTG----ILIHGADAMRIALKRQQIIAALLGPGGEEEMRLTRMPGAEL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +K+ + + + + F +++ +E+ E L + + I++ + ++K Sbjct: 63 RKDAAQLLDAVKAVGFFPGPRVVFVEDCP-ETSAPAVLTALEDWQPGDAQIVVTAGQLKP 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178 ++ +RK E + A Y D IE L + E +L Sbjct: 122 SSKIRKAFETHPNAYAAGIYDDPPSRAE--IERMLSAAGIRDVPPEPMTVLSDLARDLGP 179 Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 GD + ++KL+ Y L D + + + + +++++N +GK L Sbjct: 180 GDFAQT---MEKLALYKLGDTAPLVLEDIAACAPRSTEAALDDVLNVVAEGKEGEIGPLI 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 A +L G + F+ L + + I + +R+ + Sbjct: 237 RRLQAQGTTPVSLCIGATRHFRTL----YTCASAPGGPSQGIGALRPPVFGPRRDRILNQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + W + L + R + + ++ + ++ +A + Sbjct: 293 AQRWGARRLEAALTVLTDTDLALRSAGQSAPQMALVERAMIRLAWLSRSR 342 >gi|332187674|ref|ZP_08389409.1| DNA polymerase III, delta subunit [Sphingomonas sp. S17] gi|332012240|gb|EGI54310.1| DNA polymerase III, delta subunit [Sphingomonas sp. S17] Length = 339 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 45/341 (13%), Positives = 106/341 (31%), Gaps = 13/341 (3%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 I+++ +++ +G D+ EL + + + L++ ++ + + Sbjct: 8 IRQALSRPSADIRLYLLHGPDEAGASELARLLAEAMGREAER----IDLDSATLKSDPAR 63 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E + SLF + I I + E L ++ + ++ + +K + K Sbjct: 64 LTDEAAALSLFGGPRFIRIAGIGEE--GLAAFTALLEAESAGNPVVAIAPTVKTTAKIVK 121 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +A +A CY L ++ L+ G DR EL+ Sbjct: 122 LALDSPRAMAFGCYAPTAADAERLAVTMASEMGLRLAAGVPARLVEAAGADRAVITRELE 181 Query: 190 KLSSY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 KL+ Y + I D + + + A ++G++ + Sbjct: 182 KLALYLDADTDRPREADHAAMDAIGADLGEAEMGDAVEAVVEGRVGDLGGELALLDEGGA 241 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 L ++ L ++ + E ++++ + +LR W + Sbjct: 242 SPIPWLRALARRLIALAEMRADID-KGEPVEAVMKRHR--VFFRDEAKTARALRRWTPAM 298 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + L +I + IAQ + Sbjct: 299 LARALTRIRAAERAVMAPGNAGAVLAEAEATIIAQGIARRG 339 >gi|84500592|ref|ZP_00998841.1| hypothetical protein OB2597_11556 [Oceanicola batsensis HTCC2597] gi|84391545|gb|EAQ03877.1| hypothetical protein OB2597_11556 [Oceanicola batsensis HTCC2597] Length = 341 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 122/336 (36%), Gaps = 13/336 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + YG+D I + + L L A EI+++ + + Sbjct: 13 ARPEADRTGLLIYGADGMRIALRRQEVIAALVGPQGEEEMRLTRLPAAEIRRDPALLADA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 I + F +++ +E+ +TE L + + ++I + ++K + LRK E Sbjct: 73 IKAVGFFPGPRVVFVED-ATEVHAPAILPALEDWREGDAQVVITAGQLKPTSKLRKFFES 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKL 191 + A + Y + + IE L + +S++A + L A D R L+KL Sbjct: 132 HRNAYAAAIYDNPPTRVE--IEAELKRSGLTDLSQDALRDLSALAMAIDPGDFRQTLEKL 189 Query: 192 SSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 Y D +T + + + I+++++ + K L A + L Sbjct: 190 VLYKHGDATPVTPADLAAVAPASTEAEIDDMLDIVAEAKAAEIGPLMQRLRAQGIQPVTL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 G ++ F+ L + + I K + +R+ + + W +++ L Sbjct: 250 CIGLMRHFRTL----YAVAAAPGGAGEGINKVRPPVYGPRRDRVLRQAQGWGALKLQQAL 305 Query: 311 HKIDHRIHLARKKK--YLEKNIIFQTILYIAQTACK 344 +I R ++ ++++ +A A + Sbjct: 306 TEITETDLALRSAAQTAPAMALVERSLIRLAMMARR 341 >gi|294675812|ref|YP_003576427.1| DNA polymerase II [Rhodobacter capsulatus SB 1003] gi|294474632|gb|ADE84020.1| DNA polymerase II [Rhodobacter capsulatus SB 1003] Length = 341 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 24/353 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59 +A I + ++ K + + YG+D + I L L+ Sbjct: 3 LAGIAATRYFGKPDP----ARLGLLIYGADAMRVALRRQEVIAALIGPEGEAEMRLTRLS 58 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118 +++K+ S + I F +++ +E + + + + II+ + Sbjct: 59 GADLRKDASQVIDGIKEIGFFPGPRVVFVEEATD--TTAPAFDAAVKAWTHGDAQIIVTA 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK-----EAKQIL 173 + + LRKI E + AI Y D IEE L + + Sbjct: 117 GALTAKSALRKIFENHPNAYAIGIYDDPPSREE--IEEILKKAGLRAIPNETMTDVLALS 174 Query: 174 LANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 A GD R ++K++ Y D +T V T I+E++ G+ + Sbjct: 175 KALDPGD---FRQTIEKIALYKHGDMSPLTPAEVALSAPSTVEAEIDEVLELVADGRPLD 231 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + + L + F+ L + + I K + +R+ Sbjct: 232 LARMMRRIEGQGVQPVTLAIMATRHFRTLHM--AASDPGGVGAG--IGKLRPPVFGPRRD 287 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344 +LQ W + E L + R K + +I + ++ +A A K Sbjct: 288 VLQRQASRWGMMRLEEALKVLIEADLTLRSASKAPQMAVIERALMRLASLAAK 340 >gi|89070616|ref|ZP_01157896.1| hypothetical protein OG2516_11956 [Oceanicola granulosus HTCC2516] gi|89043763|gb|EAR49965.1| hypothetical protein OG2516_11956 [Oceanicola granulosus HTCC2516] Length = 341 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 119/336 (35%), Gaps = 16/336 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 ++ + + YG D I + + L + A E++K+ + + Sbjct: 13 RSPDPARTGLLIYGPDAMRIAAKRQQVLAALLGPNAESEMRLARIPASELRKDPAALLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 + + F + +L+E + + L + + + + +I+ + ++ ++LRK+ E Sbjct: 73 VKAQGFFPGPRAVLVEEAAD--GLSTTLSAALKEWSAGDAQVIVTAGQLTARSSLRKLFE 130 Query: 133 KFTSVLAISCYPD--NKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 S A + Y D + + ++ + SL + + GD R L+ Sbjct: 131 SHPSAYAAAIYDDPPGRDEIAGMLKDASLSDVAGEALEALAALARELPPGD---FRQTLE 187 Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL+ Y L ++ + V + + ++ ++ A G + L A + Sbjct: 188 KLALYKLGATEPVSVEEVALMAPASSEAGVDAVLEAVASGATESIGPLLRRLYAQGVQPV 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L G ++ F++L + + + + +R+ + + W + Sbjct: 248 TLCIGAVRHFRILHT--AASDPGG--PGSGVARLRPPVFGRRRDRIVRQAQQWGVVKLEA 303 Query: 309 TLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTAC 343 L + R + ++ + ++ +A A Sbjct: 304 GLSILTDTDLRLRSVSAAPAQALMERALIRLAMLAR 339 >gi|110677468|ref|YP_680475.1| hypothetical protein RD1_0052 [Roseobacter denitrificans OCh 114] gi|109453584|gb|ABG29789.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 333 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 44/327 (13%), Positives = 107/327 (32%), Gaps = 21/327 (6%) Query: 24 FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG+D + + + + L LN +++K+ + + + + F Sbjct: 22 ILIYGADAMRVALKRQQLLAALLGKEAEEEMRLTRLNGGDLRKDPALLLDAVKAVGFFPG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + ++ + E L + + II+ + +K + LRK E + A Sbjct: 82 PRAAFVQE-ANENTAPAILTALADWQPGDAQIIVTAGALKPTSKLRKAFEAHPNAYAAGI 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQKLSSYC-LEDI 199 Y + IE +L ++ + + L D R ++KL+ Y + Sbjct: 141 Y--DNPPTRAEIETTLAETGLALPTGDVMAALSDLAQAIDPGDFRQTIEKLALYKLHDPA 198 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+ Q + + +++++ + + + + +A L G ++ F+ Sbjct: 199 PISLQDIAACAPTSTEADVDDVLMVVAEARAHEIGPMMQKLIAQGANPVGLCIGAMRHFR 258 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + S I R+ + R W + L + Sbjct: 259 ALH--RAACDTSG----------RPTIFGPNRDRMLAQSRKWGAAKLETALTVLMDTDLQ 306 Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344 R + ++ + + +A A + Sbjct: 307 LRSAGQHAPGMALVERAFIRLAMLAPR 333 >gi|83949883|ref|ZP_00958616.1| hypothetical protein ISM_02275 [Roseovarius nubinhibens ISM] gi|83837782|gb|EAP77078.1| hypothetical protein ISM_02275 [Roseovarius nubinhibens ISM] Length = 341 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 119/327 (36%), Gaps = 13/327 (3%) Query: 24 FIFYGSDKGLIFELINQFKKN-ISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG+D + + K I + L + A +++K+ + + I + F Sbjct: 22 LLIYGADAMRVAMRRQEVIKALIGPQGEEEMRLTRMPAADLRKDPALLLDAIKAQGFFPG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++ +E+ +TE L + + II+ + +K + +RK E + A + Sbjct: 82 PRVAFVED-ATETAAPAILAALEDWAEGDAQIIVTAGTLKPTSKIRKAFEGHKNAYAAAI 140 Query: 143 YPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKLSSYCLEDIL 200 Y D IE L + EA L+A D R L+KLS Y L D Sbjct: 141 YDDPPSRAE--IEAELSRAGLGNVPGEAMTDLVALSKALDPGDFRQTLEKLSLYKLGDDS 198 Query: 201 -ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 ++ + +++ + +++++ +G+ + A + L + F+ Sbjct: 199 PLSSEDIQNCAPGSTEAETDDVLHIVAEGRSQEIGPVLKRLKAQGVQPVGLCIAATRHFR 258 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + + I + + +R+ + + W + + L + Sbjct: 259 TLYT--AASDPGG--AAQGIARMRPPVFGPRRDRMLRQAQGWGAAKLEQALSILLETDLT 314 Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344 R + + ++ + ++ +A A + Sbjct: 315 LRSAGRVAPDMALVERALIRLAMLARR 341 >gi|86136915|ref|ZP_01055493.1| hypothetical protein MED193_14612 [Roseobacter sp. MED193] gi|85826239|gb|EAQ46436.1| hypothetical protein MED193_14612 [Roseobacter sp. MED193] Length = 342 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/340 (13%), Positives = 113/340 (33%), Gaps = 19/340 (5%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 S + YG+D + + + + L + +++K+ + + Sbjct: 13 AKPDPSKTGLLIYGADAMRVALKRQQMLAALLGPGADEEMRLSRMPGSDLRKDPAQLLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + F + + +E + + L + + II+ + ++K + LRK E Sbjct: 73 VKAVGFFPGARAVFVEE-ANDTAAPAILAALEEWQPGDAQIIVTAGQLKATSKLRKGFEA 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNEL 188 + A Y D IE L Q + ++ L GD SR + Sbjct: 132 HNNAYATGIYDDPPSRAE--IERILSGAQIRDVPSDSMSALTDIANDIGPGD--FSRM-I 186 Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KLS Y D ++ ++ + + +++++N +G+ L + + Sbjct: 187 DKLSLYKHGDRAPLSLDDIQAVAPQSTEAALDDVLNVVAEGRTPEIGPLISRLQSQGTNA 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L G + F+ L + I + + +R+ + + W + ++ Sbjct: 247 VTLCIGATRHFRTL----YTVAADPGGPAQGIGRLRPPLYGKRRDRVLRQAQGWGADRLQ 302 Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 L + R + ++ + ++ ++ Sbjct: 303 RGLTILTDTDLALRSAGQTAPALALMERALIRLSMLGRAR 342 >gi|291535780|emb|CBL08892.1| DNA polymerase III, delta subunit [Roseburia intestinalis M50/1] Length = 328 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 11/311 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ L + ++ KN D + I N + + F+ Sbjct: 16 IYLLYGTEAYLKKQYKDKL-KNAMAAPDDNMNFTTFEGKNI--NPKEVIDLAETLPFFAD 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++ILIE+ K + L E + + I E+ K + + K + ++ S Sbjct: 73 RRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEEEVDKRSKMYKTVKNNGKIVEFS- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L I L K+I+ Q+ L+ G D EL+KL Y L+ +IT Sbjct: 132 -AQSEELLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYALDRDVIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V + + I E++NA + A+ L L K P ++ ++FQ+L Sbjct: 191 AEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITRQFQILL 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 + + + I + +KRNI + + ++ L+ ++ + Sbjct: 251 NVR-DMAGRGMDNQSIAKNAGIPPFAVKRNI--SQAKGFTMEQLKRALYDGADLEESVKT 307 Query: 320 ARKKKYLEKNI 330 R + + Sbjct: 308 GRMNDQMAVEL 318 >gi|330813397|ref|YP_004357636.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. IMCC9063] gi|327486492|gb|AEA80897.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp. IMCC9063] Length = 337 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 142/333 (42%), Gaps = 7/333 (2%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 L + YG + LI E+ N T + ++ + +N F IN Sbjct: 11 QELLKKKFTLLYGENLSLISEIENIITAEAKTTKN--LTIKKYQEEYLLQNKDIFDQLIN 68 Query: 76 STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 + SLF +++++I + ST+K + L + + II S + K + LR +AE T Sbjct: 69 AESLFGDQEMVVI-SKSTDKII--ELYDEKNAQDNDKQIIFLSGPLTKKSKLRNLAETST 125 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + I+CY D L ++ + L + S+S+E + +R + + K+ Sbjct: 126 NFTCIACYNDTPEQLQSILFQKLKDNKISVSREFINSIFEINSLNRQDINDAVSKVQL-I 184 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ITE+++K I + EIIN + G N + + + +L Sbjct: 185 QNTSKITEENLKTIFHSSENSNNFEIINFCLLGDKKNINKVLSNIYEQGINFNEILAALK 244 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K + L I + + ++ ++++ + I ++++++E LR W+K+ +++ + + Sbjct: 245 YKVKKLIDI-LESDIADKDPNQLVESFKPPIFWKEKSMVKEQLRRWDKSELKQLMEIVYD 303 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 +K + I+ Q I+ + +C +N + Sbjct: 304 IEVECKKNYDVSNIILQQFIVSTSNKSCLDNRY 336 >gi|149173352|ref|ZP_01851982.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797] gi|148847534|gb|EDL61867.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797] Length = 338 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 125/327 (38%), Gaps = 20/327 (6%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN- 66 +F+ + F V + YG D+ + E I + + D S+ + ++K Sbjct: 7 EFLLNPAASEF--GPVVVLYGDDRYMKQEAIKAIEPLVLGEEEDT-SITRYDGKRLEKEL 63 Query: 67 -ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 ST ++E+ + S++ K+++++++ LE+ + + +I+ K+ Sbjct: 64 PPSTLFDELKTVSMWGDKRLVIVDDAEKFVSAFRGKLEKYLEAPSKSSFLILDVKSWSKS 123 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI-GQKSISKEAKQILLANLGGDRIA 183 L K+ L + C L I ++ QK IS+EA +L+ +G Sbjct: 124 TRLAKLV--SKIGLDLECKELKGGALAKWICDTAGQLHQKQISREAAALLVELVGTHCGQ 181 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 EL+KL+++ + I+ ++ ++ + +A G I +A+ D L + Sbjct: 182 IHQELEKLTTFVGDQPRISPDDIRAVVGGWKAETTWAMTDAVRDGNIGDALHYLDNLLVA 241 Query: 244 KMPSHALLHGF----LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 +L G + F+ ++ ++ I++ + P + + LR Sbjct: 242 GEAPQKILGGLNFVWRKYFKATQQ-----AVQGTPLKQAIKQAG--VFPRDIDSTERYLR 294 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYL 326 + + H + + K L Sbjct: 295 RLTRKRAEKICHWLLETDLNLKGKSRL 321 >gi|257414009|ref|ZP_04744970.2| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82] gi|257201505|gb|EEU99789.1| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82] Length = 342 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 11/311 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ L + ++ KN D + I N + + F+ Sbjct: 30 IYLLYGTEAYLKKQYKDKL-KNAMAAPDDNMNFTTFEGKNI--NPKEVIDLAETLPFFAD 86 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++ILIE+ K + L E + + I E+ K + + K + ++ S Sbjct: 87 RRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEEEVDKRSKMYKTVKNNGKIVEFS- 145 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L I L K+I+ Q+ L+ G D EL+KL Y L+ +IT Sbjct: 146 -AQSEELLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYALDRDVIT 204 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V + + I E++NA + A+ L L K P ++ ++FQ+L Sbjct: 205 AEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITRQFQILL 264 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 + + + I + +KRNI + + ++ L+ ++ + Sbjct: 265 NVR-DMAGRGMDNQSIAKNAGIPPFAVKRNI--SQAKGFTMAQLKRALYDGADLEESVKT 321 Query: 320 ARKKKYLEKNI 330 R + + Sbjct: 322 GRMNDQMAVEL 332 >gi|126463256|ref|YP_001044370.1| DNA polymerase III, delta [Rhodobacter sphaeroides ATCC 17029] gi|126104920|gb|ABN77598.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides ATCC 17029] Length = 330 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ +++ K S + +G D + + I L L A ++ Sbjct: 7 EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +++ + + + + F + +L+E + + + +++ + + +++ + + Sbjct: 63 RRDPAALMDAMTAKGFFDGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180 ++L+K+ E + + I Y D + ++ L I +A L A D Sbjct: 121 GRSSLKKLFEAHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178 Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R ++KL+ Y L D ++ V ++ + ++E+I+A +G+ L Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRTEVSPLVRR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A + + AL G ++ F+ L ++ + ++ +Q R Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286 Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338 W N + E + + R + ++ + ++ + Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326 >gi|322421078|ref|YP_004200301.1| DNA polymerase III subunit delta [Geobacter sp. M18] gi|320127465|gb|ADW15025.1| DNA polymerase III, delta subunit [Geobacter sp. M18] Length = 329 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 46/335 (13%), Positives = 123/335 (36%), Gaps = 13/335 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + K S +++ YG + L+ + + F+L V E Sbjct: 1 MKPEEFNRAVEKGELAS--LYLLYGDEPYLVERAVKKLLDRAVDPGFRDFNLNVFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + ++ + +F++++++L++ ++ L + +I+++ ++ Sbjct: 59 KGDE--VFSASQTLPMFAERRVVLVKKGGDLSASAMEVLLPYLQDPSPGTCLILQAEKVD 116 Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 +K + Y L + + + K I A ++L +G + Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIEPAAAELLAYLVGNNL 173 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 ++++KL YC + +T VK I+ DT V + E +A ++ A+ + L Sbjct: 174 QELVSQIEKLCIYCGKKETVTVADVKAIVSDTKVESVFEFTDALGSKELPRALKMLTALL 233 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 +L + ++ L ++ + + E K + R + Sbjct: 234 QDGEAPLRILGAVARHYRQLWQVRELLDRKVPQAELAKASGINPYFLGK---VTAQARNY 290 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 ++ ++ + A K LE+ + + ++ Sbjct: 291 TTGELKRIFERMLE-LDQAFKSGGLEEPLFERFVM 324 >gi|77464415|ref|YP_353919.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides 2.4.1] gi|77388833|gb|ABA80018.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides 2.4.1] Length = 330 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 49/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ +++ K S + +G D + + I L L A ++ Sbjct: 7 EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +++ + + + + F + +L+E + + + +++ + + +++ + + Sbjct: 63 RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180 ++L+K+ E S + I Y D + ++ L I +A L A D Sbjct: 121 GRSSLKKLFEAHPSAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178 Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R ++KL+ Y L D ++ V ++ + ++E+I+A +G+ L Sbjct: 179 PGDVRQTVEKLALYKLGDPAPLSAADVAEMAPVSIEAGVDEVIHAVAEGRRTEVSPLVRR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A + + AL G ++ F+ L ++ + ++ +Q R Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286 Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338 W N + E + + R + ++ + ++ + Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326 >gi|332559305|ref|ZP_08413627.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides WS8N] gi|332277017|gb|EGJ22332.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides WS8N] Length = 330 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ +++ K S + +G D + + I L L A ++ Sbjct: 7 EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +++ + + + + F + +L+E + + + +++ + + +++ + + Sbjct: 63 RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180 ++L+K+ E + + I Y D + ++ L I +A L A D Sbjct: 121 GRSSLKKLFESHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178 Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R ++KL+ Y L D ++ V ++ + ++E+I+A +G+ L Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRTEVSPLVRR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A + + AL G ++ F+ L ++ + ++ +Q R Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286 Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338 W N + E + + R + ++ + ++ + Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326 >gi|84515042|ref|ZP_01002405.1| hypothetical protein SKA53_12498 [Loktanella vestfoldensis SKA53] gi|84511201|gb|EAQ07655.1| hypothetical protein SKA53_12498 [Loktanella vestfoldensis SKA53] Length = 340 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 124/336 (36%), Gaps = 14/336 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + +H + +G+D + + + + L +NA +++K+ + + Sbjct: 13 RKPDPAHAGLLIFGADPMRVATKRQQAIAALVGPQGDEEMRLTRINAADLRKDAALLDDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 I + F ++ +E+ + + +E + + +++ + ++ + LRK E Sbjct: 73 IKAQGFFPGHRVAFVEDATD--TLSKLIEAALTDWRPGDAQLVVTAGQLTAKSALRKAFE 130 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASRNELQK 190 + +AI Y D M I +L ++ L A G + R + K Sbjct: 131 SHRNAMAIGIYDDPPS--MSDIARALADAGLEQPGRDVMDALFALAGTLEPGDFRQTVDK 188 Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + Y D +T V + + ++++++ G++ + A + Sbjct: 189 VGLYKQGDATPLTIADVMANAPQSAEVDVDDVLDVVTAGQVDQLGPVLRGLYAQGVTPVT 248 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L G ++ F+ L + + S + + + +R+ + + W ++ + + Sbjct: 249 LCIGAMRHFRRLHV--VASDPGGASAG--VARLRPPVYGPRRDKIARQVSHWGRDRLEKA 304 Query: 310 LHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344 L + R + ++ +T++ +A A + Sbjct: 305 LTALTDTDLQLRSASTAPQAALMERTLIRLAMMARR 340 >gi|85704106|ref|ZP_01035209.1| hypothetical protein ROS217_13946 [Roseovarius sp. 217] gi|85671426|gb|EAQ26284.1| hypothetical protein ROS217_13946 [Roseovarius sp. 217] Length = 342 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 111/338 (32%), Gaps = 15/338 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + YG+D + + + T L + A +++K+ + + Sbjct: 13 AKPEAQRTGLLIYGADAMRVALKRQEMLAALLGPTADAEMRLTRMPAADLRKDPAALMDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + F + +E+ + + L + + I++ + +K + +RK E Sbjct: 73 VKAQGFFPGPRAAFVED-ANDTAADAILAALSDWRAGDAQIVVTAGALKSTSKIRKAFES 131 Query: 134 FTSVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + A+ Y D + L L + + + GD R ++K Sbjct: 132 HPNAYAVGLYDDPPSREEIEAALTRAGLRDVPGPVMADLTALARDLDPGD---FRQTVEK 188 Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 L+ Y L D + + + +++I+N +G+ + A Sbjct: 189 LALYKLGDATPLNASDIAACAPASTEADLDDILNIVAEGRSSEIGPVMRRLKAQGTQPVG 248 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L G + F+ L + I + I +R+ + + W +++ Sbjct: 249 LCIGATRHFRAL----YTAASDPGGAAQGIARMRPPIFGPRRDRMLRQAQGWGAERLQQA 304 Query: 310 LHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 L + R ++ E ++ + ++ +A A Sbjct: 305 LTILTDTDLTLRSAAQRAPEMALVERALIRLAMLASAR 342 >gi|221640306|ref|YP_002526568.1| DNA polymerase III subunit delta [Rhodobacter sphaeroides KD131] gi|221161087|gb|ACM02067.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides KD131] Length = 330 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ +++ K S + +G D + + I L L A ++ Sbjct: 7 EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +++ + + + + F + +L+E + + + +++ + + +++ + + Sbjct: 63 RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180 ++L+K+ E + + I Y D + ++ L I +A L A D Sbjct: 121 GRSSLKKLFEAHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178 Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R ++KL+ Y L D ++ V ++ + ++E+I+A +G+ L Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRVEVSPLVRR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A + + AL G ++ F+ L ++ + ++ +Q R Sbjct: 239 LEAQGVNAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286 Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338 W N + E + + R + ++ + ++ + Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326 >gi|149915699|ref|ZP_01904225.1| hypothetical protein RAZWK3B_07077 [Roseobacter sp. AzwK-3b] gi|149810591|gb|EDM70434.1| hypothetical protein RAZWK3B_07077 [Roseobacter sp. AzwK-3b] Length = 341 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 117/336 (34%), Gaps = 13/336 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + +G D + I L + A +++K+ + + Sbjct: 13 ARPEAGRTGLLIHGPDGMRVALRRQEVIAALIGPQGEQEMRLTRIPAADLRKDPAMLLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + F ++ +E+ S E ++ + + +++ + ++K + LRK+ E Sbjct: 73 VKAQGFFPGPRVAFVEDAS-ETVAQIIIDALAEWREGDAQVVVTAGQLKPASKLRKLFEG 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKL 191 + A + Y D IE +L + I+ +A + L A D R ++K+ Sbjct: 132 HPNAYAAAIYDDPPSRAE--IEATLKRVGLTNIAGDAMRDLTALAHDLDPGDFRQTMEKI 189 Query: 192 SSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + L D ++ + V + +++I+N + + + A + L Sbjct: 190 GLFKLGDPDPLSSEDVAACAPSSTEAELDDILNIVAEARSGEIGPMMKRLRAQGVQPVTL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + F+ L + I + + +R+ + + W +++ L Sbjct: 250 CISATRHFRTL----YAAASDPGGPAQGIGRVRPPVFGPRRDRMVRQAQGWGAQKLQDAL 305 Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACK 344 + R + ++ +T++ +A A + Sbjct: 306 GYLTDTDLELRSAGQHAPAMALVERTLIRLAMMAAR 341 >gi|260574446|ref|ZP_05842450.1| DNA polymerase III delta [Rhodobacter sp. SW2] gi|259023342|gb|EEW26634.1| DNA polymerase III delta [Rhodobacter sp. SW2] Length = 339 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 54/343 (15%), Positives = 123/343 (35%), Gaps = 22/343 (6%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ ++ K + +G D + I L L+A ++ Sbjct: 7 EASRYFGKPDP----KRTGLLIFGQDAMRVALRRQEVIAALIGPEGEAEMRLARLSAADL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN--ICNHIIIIKSNEI 121 +K+ + + + F ++ +E S + L I +K+ + +I+ + + Sbjct: 63 RKDPAALIDACRAQGFFPGPRVAFLEEASD---AVAPLVAIALKDWRPGDATLIVTAGNL 119 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGGD 180 + L+K+ + S ++I Y D IE L +IS A LLA LG D Sbjct: 120 TGKSALKKLFDDHGSAISIGLYDDPPSREE--IEAVLTKSGLAAISPAAMTDLLA-LGRD 176 Query: 181 R--IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 R ++KLS Y +D +T + V + ++++++A +G+ L Sbjct: 177 LDPGDFRQTVEKLSLYKWQDATPLTPEDVAACAPGSIEAEVDDVLHAVAEGRGNAVGPLM 236 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 + +L L+ F+ L + + + + + +R+ + + Sbjct: 237 RRLEGQGVLPVSLCINALRHFRTLHF--AAADPGGPASG--LARMRPPVFGPRRDRMLQQ 292 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339 ++ W + L + R ++ + ++ +A Sbjct: 293 VQGWGLRNLETALSLLVETDLTLRSTSRAPAMAVMERALIRLA 335 >gi|310817223|ref|YP_003965187.1| hypothetical protein EIO_2816 [Ketogulonicigenium vulgare Y25] gi|308755958|gb|ADO43887.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25] Length = 343 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 112/331 (33%), Gaps = 18/331 (5%) Query: 25 IFYGSDKGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + G D + E Q + L + A +++K+ + + + + F Sbjct: 23 LIAGEDSVRVAERRRQLLTALLGPNAESEMRLTRIAAADLRKDGALLLDALKAIGFFPGP 82 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + +L+E+ + + + + + + +II + + ++LRK+AE A+ Sbjct: 83 RAVLLEDATD--GLTQQIGKAMKDWAQGDAQLIITAGALTARSSLRKLAEAAPRFAAVVL 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSI----SKEAKQILLANLGGDRIASRNELQKLSSY-CLE 197 Y D + + L S K A L L D R ++K+S Y + Sbjct: 141 YDDPPGPEE--VAQMLAEAGLSTVAPEGKAAILALSKLL--DPGDFRQTIEKISLYKIGD 196 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + + + +H + +I A G+ A + L L+ Sbjct: 197 SSPVGLEDIAACAPQSHEADTDTLIAAVALGQREAIAGQLRLLYAQGVQPVGLCIATLRH 256 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F+ L + ++ + + + +R+ + R WN V E LH I Sbjct: 257 FRQLHG--AMTYPGGVAEG--LTRATPPVFGPRRDAIIAQSRGWNVARVEEALHSILETD 312 Query: 318 HLAR-KKKYLEKNIIFQTILYIAQTACKNNN 347 R ++ + +L +A A Sbjct: 313 LRLRASNPPPAGPLVERMLLRLASFARAQTR 343 >gi|325661908|ref|ZP_08150528.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325471760|gb|EGC74978.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 326 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 9/314 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + ++ K I + D + I + + FS+ Sbjct: 16 IYLLYGEEVYLKKQYKDRLSKAI-VNEGDTMNYSYYEGKGIH--PGELIDLAETMPFFSE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I++EN K L + + + + E+ K L K + ++ + Sbjct: 73 RRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAKGRIVELG- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L+ I + K IS+ Q LLA G D + EL+KL Y LE IT Sbjct: 132 -RQDEHTLVRWILGMVKREGKQISERTVQFLLAKTGDDMENLQRELEKLFCYTLEKDAIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V++I I E++ A + K A+ L LA K P +L +++F+LL Sbjct: 191 VEDVEEICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRILFLLVRQFRLLL 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 ++ + S ++I +KT + + + Q +++ K +RE L + + + K Sbjct: 251 EVK-ELDQSGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE-MAADLEESVK 306 Query: 323 KKYLEKNIIFQTIL 336 L + + + Sbjct: 307 TGRLTDALATELFI 320 >gi|117926654|ref|YP_867271.1| DNA polymerase III subunit delta [Magnetococcus sp. MC-1] gi|117610410|gb|ABK45865.1| DNA polymerase III, delta subunit [Magnetococcus sp. MC-1] Length = 346 Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 127/329 (38%), Gaps = 19/329 (5%) Query: 23 VFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + YG ++G I + + ++ + F L ++ + F + + S Sbjct: 20 VILLYGQEQGRIEDAAKKIEQWVLGPDADADFDLERFYGGDL--DEGRFLSSCRAIPFLS 77 Query: 82 KKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 ++++++ K L LE + + +++ ++ + ++TLRK EK Sbjct: 78 PMRLVVVKEADKLLLPLRKSFLSYLEN---EPSKSSVVLFLADNLDASHTLRKGLEKHEQ 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGGDRIASRNELQKLSSYC 195 + Y + IEE L S + +L+ L GD ++ EL+KL Y Sbjct: 135 SWVVPFYALAGREMGGWIEEHLRCHGFSAAEPDLIPLLVQLLEGDTRSAEQELEKLFLYV 194 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALLHG 253 + I + + I+ + + ++ +A ++G A+ D + + + LL Sbjct: 195 GKPGPIRLEDARAIVGEAALHSGFDLADAVLRGDAAKALHTLDGLVQAGGMSEALPLLGL 254 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 Q+ + L + + +S +++ +K I +++ R + + E L Sbjct: 255 ITQRIRRLAQAQGWMQR-GMSGDEVTRKLR--IFWKEKDHFLAQCRQVSAKHLAEGLITC 311 Query: 314 DHRIHLAR--KKKYLEKNIIFQTILYIAQ 340 + + + + ++ IL +A+ Sbjct: 312 QNADRQLKGAEGARPPEQVLGIMILRLAR 340 >gi|163734315|ref|ZP_02141755.1| hypothetical protein RLO149_08724 [Roseobacter litoralis Och 149] gi|161392323|gb|EDQ16652.1| hypothetical protein RLO149_08724 [Roseobacter litoralis Och 149] Length = 333 Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 107/327 (32%), Gaps = 21/327 (6%) Query: 24 FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG+D + + + + L LN +++K+ + + + + F Sbjct: 22 ILIYGADAMRVALKRQQLLAALLGKEAEEEMRLTRLNGGDLRKDPALLLDAVKAVGFFPG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + ++ + E L + + II+ + +K + LRK E + A Sbjct: 82 PRAAFVQE-ANENTAPAILTALADWQSGDAQIIVTAGALKPTSKLRKAFEAHPNAYAAGI 140 Query: 143 YPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQKLSSYC-LEDI 199 Y + IE +L ++ + + L D R ++KLS Y + Sbjct: 141 Y--DNPPTRAEIETTLAETGLALPTGDVMAALSDLAQAIDPGDFRQTIEKLSLYKLHDPA 198 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+ Q + + +++++ + + + + +A L G ++ F+ Sbjct: 199 PISLQDIAACAPTSTEADVDDVLMVVAEARAHEIGPMMQKLIAQGANPVGLCIGAMRHFR 258 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + S I R+ + R W + L + Sbjct: 259 ALH--RAACDTSG----------RPTIFGPNRDRMLAQSRKWGAVKLETALTVLTDTDLK 306 Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344 R + ++ + + +A A + Sbjct: 307 LRSAGQHAPGMALVERAFIRLAMLAPR 333 >gi|331085701|ref|ZP_08334784.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406624|gb|EGG86129.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 326 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 9/314 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + ++ K I + D + I + + FS+ Sbjct: 16 IYLLYGEEVYLKKQYKDRLSKAI-VNEGDTMNYSYYEGKGIH--PEELIDLAETMPFFSE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I++EN K L + + + + E+ K L K + ++ + Sbjct: 73 RRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAKGRIVELG- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L+ I + K IS+ Q LLA G D + EL+KL Y LE IT Sbjct: 132 -RQDEHTLVRWILGMVKREGKQISERTVQFLLAKTGDDMENLQRELEKLFCYTLEKDAIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V++I I E++ A + K A+ L LA K P +L +++F+LL Sbjct: 191 VEDVEEICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRILFLLVRQFRLLL 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 ++ + S ++I +KT + + + Q +++ K +RE L + + + K Sbjct: 251 EVK-ELDQSGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE-MAADLEESVK 306 Query: 323 KKYLEKNIIFQTIL 336 L + + + Sbjct: 307 TGRLTDALATELFI 320 >gi|159042611|ref|YP_001531405.1| DNA polymerase III subunit delta [Dinoroseobacter shibae DFL 12] gi|157910371|gb|ABV91804.1| DNA polymerase III, delta subunit [Dinoroseobacter shibae DFL 12] Length = 341 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 114/339 (33%), Gaps = 12/339 (3%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVLNALEIQ 64 + + + + YG+D + K + D L L+ +++ Sbjct: 4 APRDLPGFVARPEPGRAGILLYGADAMRVSLRRQALLKALVGEKGDEEMRLTRLHGPDLR 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 ++ + + + + S++ + + + + +T++ + + ++++ + + Sbjct: 64 RDPAALMDAMKAISMYPGPRAVHV-DAATDQAAPAITAALGDWREGDAVLVVTAGSLGAK 122 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRI 182 + LRK E + A Y D IE L + ++A L D Sbjct: 123 SALRKAFEGHRNAYAAGIYDDPPDRAE--IEALLRSAGIAEVGRDAMSDLTDLSRAVDPG 180 Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 ++KL+ Y D IT + + + T I+ +++A + ++ L Sbjct: 181 DFAQIVEKLALYKHGDASPITPEDLAAVAPATTEAEIDALLHAVAEAEVARIPPLVARLS 240 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + L G + F+ L + + I + + RN + + W Sbjct: 241 GQGEGAVRLCIGAVMHFRRLYT--AAIDPGGPAAG--ISRARPPVFGPARNRMIRQAQSW 296 Query: 302 NKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339 + L + R + + ++ + ++ +A Sbjct: 297 GAPKLETALSILTETDLALRSSQKAPQMALMERALIRLA 335 >gi|225378291|ref|ZP_03755512.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM 16841] gi|225209858|gb|EEG92212.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 123/312 (39%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L + ++ KK + + D + + N + + F+ Sbjct: 15 KIYLLYGDEAYLKKQYKDKLKKAL-VQPDDTMNFTAYEGKDT--NPKEVIDLSETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++ILIEN K + L E + + + + E+ K + L K + ++ + Sbjct: 72 DRRVILIENSGFFKGSCEELAEYMPQVPDTTLFLFVEEEVDKRSKLYKAVKNVGKIVEFT 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + L I L K+I+ Q+ L+ G D EL+KL YC++ +I Sbjct: 132 IQTEEL--LTRWILTRLKKEGKNITGSVMQLFLSKTGTDMGNIDRELEKLICYCMDKDVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + V+ + + I +++NA + A+ L L K PS +++ ++FQ+L Sbjct: 190 EAKDVEAVTTEQTTNKIFDMVNAIAEHNQKKALDLYYDLLTLKEPSMRIMYLISRQFQIL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318 + + QK ++RN + ++ + + +++ + + + Sbjct: 250 LNVK-DMSQKGFDNNTMAQKAGIPPFAVRRN-VTQA-KGFTMQQLKQAIRDGVDFEEAVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRMNDQMAVEL 318 >gi|103488495|ref|YP_618056.1| DNA polymerase III, delta subunit [Sphingopyxis alaskensis RB2256] gi|98978572|gb|ABF54723.1| DNA polymerase III, delta subunit [Sphingopyxis alaskensis RB2256] Length = 343 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 115/336 (34%), Gaps = 9/336 (2%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 L + + + G D+ + + + L ++ ++ S E Sbjct: 13 TRLDPAVRLILLTGPDEATMDAVATHLVGLAGKEAER----LDLTNGQLAQDPSLLAVEA 68 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 S SLF+ ++I ++ L +E ++ + +I + + L K+ E Sbjct: 69 ASMSLFAPNRLIRVDLSGGGDDSLAAVEALLAAETAINPVIATGASVTAKSKLVKLVEGS 128 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 +A CY ++ L+ + + ++ Q+L+ + GD+ R E++K++ Y Sbjct: 129 DHAVAAICYQPDRRALVGIAMAAAQDQGLRLANAEAQLLVDLVSGDQALMRREIEKIALY 188 Query: 195 ----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 +T + + TH + IN + GK+ + A + + Sbjct: 189 LDAGADRQRQVTAADIAALGAATHEEDVSACINVALGGKVRELPDMLATAAAVGVAEIRI 248 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L ++ + ++ + +R+ + L IW+ + + Sbjct: 249 IRALAIRAVQLARLRAEVD-GGAHPATVVSARSSGVFWKERDAVTAQLHIWDSLRIARLM 307 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 ++ + + + + IA A + Sbjct: 308 SRLLDCERALKASGTPGAVLFRKLMTDIAHQAARAR 343 >gi|197117150|ref|YP_002137577.1| DNA polymerase III subunit delta [Geobacter bemidjiensis Bem] gi|197086510|gb|ACH37781.1| DNA polymerase III, delta subunit [Geobacter bemidjiensis Bem] Length = 329 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 115/314 (36%), Gaps = 12/314 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + K S +++ YG + L+ + + + F+L V E Sbjct: 1 MKPEEFSKAVDKGELAS--LYLLYGDEPYLVERAVKKLLERAVDPSFRDFNLNVFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + ++ + +F++++++L++ ++ L + +I+++ ++ Sbjct: 59 KGDE--VFSAAQTLPMFAERRVVLVKKGGELSAGAMEILLSYVQDPCPGTCLILQAEKVD 116 Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 +K + Y L + + + K I A ++L +G + Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIDSAAAELLAYLVGNNL 173 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 ++++KL YC + I VK I+ DT V + E +A ++ A+ + L Sbjct: 174 QELVSQIEKLCIYCGKKESIGVADVKAIVSDTKVESVFEFTDALGAKELPRALRMLTSLL 233 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 +L + ++ L ++ + + E K + + R + Sbjct: 234 QDGEAPLRILGAVSRHYRQLWQMRELLDRRLSPAELAKASGINPYFLKK---VTDQARNY 290 Query: 302 NKNLVRETLHKIDH 315 +++ ++ Sbjct: 291 TVGELKQVFERMLE 304 >gi|260429417|ref|ZP_05783394.1| DNA polymerase III, delta subunit [Citreicella sp. SE45] gi|260420040|gb|EEX13293.1| DNA polymerase III, delta subunit [Citreicella sp. SE45] Length = 342 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 119/337 (35%), Gaps = 15/337 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNIS 68 Q + S + YG D + + L + A E++++ + Sbjct: 8 AQAFFRKPDASRAGVLLYGEDAMRVAHRRQEVIAALVGPEGEAEMRLTRIQAPELRRDPA 67 Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTL 127 + I + F ++ +E+ + D + + + +I+ + ++ + L Sbjct: 68 MLLDAIKAQGFFPGPRVAFVEDAGD--GLSDVIGTALGDWRDGDAQVIVTAGQLAAKSKL 125 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASR 185 RK+ E + LAI Y D D IE +L + + A + L D R Sbjct: 126 RKLFESHHNALAIGIYSDPPGR--DEIEAALRAAGLEQVDRAAFEALEGLGRALDPGDFR 183 Query: 186 NELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L+K++ Y L+D + + V + +++I++ +G+ L Sbjct: 184 QVLEKVALYKLDDPTPLAPEEVAACAPASIEAELDDILHVVAEGRSAEIGPLVQRLAGQG 243 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + LL ++ F++L + + +Q+ + +R+ + + W + Sbjct: 244 VTPVTLLIMAMRHFRVL----YALASAPGGPQAGVQRLRPPLFGPRRDRMLRQAQGWQPD 299 Query: 305 LVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIA 339 + L + R ++ ++ + + +A Sbjct: 300 RLEAALAMLMDTDLSLRSAGQRAPAMALVERGFVRLA 336 >gi|114765736|ref|ZP_01444834.1| hypothetical protein 1100011001327_R2601_12473 [Pelagibaca bermudensis HTCC2601] gi|114541953|gb|EAU44988.1| hypothetical protein R2601_12473 [Roseovarius sp. HTCC2601] Length = 342 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 125/343 (36%), Gaps = 15/343 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIS 68 Q + S + +G D + + + L + A E++++ + Sbjct: 8 AQAFFRKPDPSRAGVLLFGEDAMRVAHRRQEVIGALVGPEGEAEMRLTRIPASELRRDSA 67 Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTL 127 + I S F ++ +E+ + + D ++ + + + II+ + ++ + L Sbjct: 68 MLLDAIKSQGFFPGPRVAFVEDATD--GLTDVIKTALDEWREGDAQIIVTAGQLAAKSKL 125 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASR 185 RK+ E F + +I Y D D IE +L + + A L D R Sbjct: 126 RKLFEGFHNAFSIGIYSDPPGR--DEIEAALRKAGLEQVDRAAFDALEGLARALDPGDFR 183 Query: 186 NELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L+K++ Y L+D +T V + +++I+N +G+ L Sbjct: 184 QVLEKVALYKLDDPEPLTPDEVALCAPASIEAELDDILNVVAEGRSAEIGPLVQRLEGQG 243 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + LL ++ F++L + + +Q+ + +R+ + + W+ + Sbjct: 244 VNPVTLLIMAMRHFRVL----YALASAQGGPQAGVQRLRPPLFGPRRDRMLRQAQNWSAD 299 Query: 305 LVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + L + R ++ ++ + + +A + + Sbjct: 300 RLEAALGMLMDTDLSIRSAGQRAPAMALVERGFVRLAWLSNRR 342 >gi|167759412|ref|ZP_02431539.1| hypothetical protein CLOSCI_01759 [Clostridium scindens ATCC 35704] gi|167662969|gb|EDS07099.1| hypothetical protein CLOSCI_01759 [Clostridium scindens ATCC 35704] Length = 326 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 113/312 (36%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L + ++ K + D + N + + + F+ Sbjct: 15 PAYLLYGEEAYLKKQYKDKLTKAMLPE-SDTVNYAYYEGKGT--NPAELIDLAETMPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++I++EN K L + I I +E+ K + K + + + Sbjct: 72 DRRLIVVENSGFFKNATPELADYIKNMPETACFIFVESEVDKRGKMYKAVKDKGRAVEMG 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ L+ + + K I + + L+A G D E++KL SY L I Sbjct: 132 --RQDEKTLLYWLAGMVKKEGKQIKESTARYLVAKTGTDMENLEKEMEKLFSYTLGQTEI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T Q V +I I +++ A + A+ LA K P +L+ ++F+LL Sbjct: 190 TVQDVDEICTTQVTNKIFDMVEAVAAKQQKQALDYYYDLLALKEPPMRILYLLARQFKLL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318 ++ +I + + + I + R ++K +R + + + + Sbjct: 250 MEVK-DLSGRGYDKPQIAKTAGLHPFVAGKYI--KQCRSFSKEELRSIMEEAANTEEMVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRLNDRMSVEL 318 >gi|149201528|ref|ZP_01878502.1| hypothetical protein RTM1035_03290 [Roseovarius sp. TM1035] gi|149144576|gb|EDM32605.1| hypothetical protein RTM1035_03290 [Roseovarius sp. TM1035] Length = 342 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 111/340 (32%), Gaps = 19/340 (5%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + YG+D + + T L L A +++K+ + + Sbjct: 13 AKPEAQRTGILIYGADAMRVALRRQEMLAALLGPTADAEMRLTRLPAGDLRKDPAALLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + + F + +E+ + + L + + II+ + +K + +RK E Sbjct: 73 VKAQGFFPGPRAAFVED-ANDTAADAILAALSDWQAGDAQIIVTAGALKATSKIRKAFES 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNEL 188 + A+ Y D IE +L + + + GD R + Sbjct: 132 HPNAYAVGIYDDPPSREE--IEATLARAGLRDVPGPVMADLTALARDLDPGD---FRQTI 186 Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +KL+ Y L D + + + +++I+N +G+ + A Sbjct: 187 EKLALYKLGDATPLNAADIAACAPASTEADLDDILNIVAEGRSAEIGPVMRRLKAQGTQP 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L G + F+ L + I + I +R+ + + W ++ Sbjct: 247 VGLCIGATRHFRAL----YTAASDPGGAAQGIARMRPPIFGPRRDRMLRQAQGWGAERLQ 302 Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345 + L + R ++ + ++ + ++ +A A Sbjct: 303 QALTILTDTDLTLRSAGQRAPDMALVERALIRLAMLATAR 342 >gi|126728333|ref|ZP_01744149.1| hypothetical protein SSE37_20122 [Sagittula stellata E-37] gi|126711298|gb|EBA10348.1| hypothetical protein SSE37_20122 [Sagittula stellata E-37] Length = 341 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 119/347 (34%), Gaps = 21/347 (6%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64 + F +K + YG D + + + + LN E++ Sbjct: 8 ADAFFRKPDPKAAG----VLIYGEDTMRVAMKRQELVANLTGPGADEEMRITRLNGAELR 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKK 123 ++ + + + +T F + +++E V D L+ + + I+ + Sbjct: 64 RDPAALLDAVKATGFFPGARAVVVEEAGD--GVTDALKAALDDWQEGDATIVATGGSLAA 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGGDR- 181 + LRK+ E A + Y N IE L S + ++A L LG D Sbjct: 122 KSALRKLFEGSKRAFAAALY--NNALTRSEIEAELKRAGISEVGRDAMGAL-EGLGRDLT 178 Query: 182 -IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R L+K++ Y L+D ++ V+ + ++++ + +G+ + Sbjct: 179 PGDFRMTLEKIALYKLDDSAPLSVAEVELNAPASFEADMDDVFHILAEGRTGEIAPVMQR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + LL + F++L + + I + + +R+ + + Sbjct: 239 LSGQGVAPVTLLIMGTRHFRMLYTLASAPGG----PAQGIGRLRPPVYGPRRDRILRQAQ 294 Query: 300 IWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACK 344 W + + L + R +K ++ + + +A A + Sbjct: 295 GWRLDRLESALELLMDADLTLRSAGQKAPAFALVERAFVRLAHLARR 341 >gi|154502623|ref|ZP_02039683.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149] gi|153796815|gb|EDN79235.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149] Length = 337 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 119/315 (37%), Gaps = 11/315 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + +F K + D + ++ I + + F++ Sbjct: 28 IYLLYGEENYLKKQYKERFVKAMLPQ-GDTMNYAYYEGKGVE--IREVIDLAETLPFFAE 84 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I+ EN K L E I I E+ K + L K + ++ + Sbjct: 85 RRLIVFENTGLFKSSGADLAEYIKTMPETTYFIFVEEEVDKRSKLYKAVKAKGHIVELPF 144 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L I ++ K IS + L +G D + EL+KL Y L +IT Sbjct: 145 --QDESTLKRWILGNVRREGKQISDASVGYFLGKVGTDMQNIQGELEKLFCYTLHRDVIT 202 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + + + + +I E++NA + K A+ L LA K P +L ++++++L Sbjct: 203 PEDIDAVCINQIGNHIFEMVNAVAEKKQRKALDLYYELLALKEPPMRILFLLVRQYRIL- 261 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR- 321 H+ +K I + + P E R + +R L + R Sbjct: 262 -FHVQSLQKKGYGKKEI-AAKAGLHPFAAGKYMEQTRYFKSEELRAVLE--ESADLEERV 317 Query: 322 KKKYLEKNIIFQTIL 336 K L + + L Sbjct: 318 KTGRLTDTLAVELFL 332 >gi|70732746|ref|YP_262509.1| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf-5] gi|68347045|gb|AAY94651.1| DNA polymerase III, delta subunit [Pseudomonas fluorescens Pf-5] Length = 345 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 124/305 (40%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G D L E + + + D + +A + T S SLF+ Sbjct: 18 PIYVISGDDPLLCQEAADAIRSAVRQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +K+++ + + K L E + + +++I ++ + K + Sbjct: 75 EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S S++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDANQLPQWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALSR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + +LL + + + +K+ + + ++ ++ ++L+ ++ + L +I Sbjct: 254 ELRLLANLALQF-SQGVPLDKVFSQARPPVWDKRKPLMSKALQRYSAQRWGQLLLDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|225573010|ref|ZP_03781765.1| hypothetical protein RUMHYD_01201 [Blautia hydrogenotrophica DSM 10507] gi|225039624|gb|EEG49870.1| hypothetical protein RUMHYD_01201 [Blautia hydrogenotrophica DSM 10507] Length = 327 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 113/315 (35%), Gaps = 9/315 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + L + + + D + I+ + + F+ Sbjct: 15 PVYLLFGEEAYLRQQYKQKLLDALMPE-EDTMNYSRYEGKGIE--PREIIDLAETMPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++IL+E+ K + L E + +I +E+ K + K A+ V + Sbjct: 72 DRRVILLEDTGFFKNKCEELAEYFKQLPDYLCMIFVESEVDKRGKMYKAAKAAGRVTEFA 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 N L + + L K I++ ++ L G D R EL+KL Y + ++ Sbjct: 132 --VQNIQTLTRWVLQMLGREGKRITQRDMELFLTKTGTDMGNIRMELEKLLVYTMGREIV 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + ++ + I +++ A + A+ L + L K P +L ++F L Sbjct: 190 SSADIEAVCTTQTSNKIFDMVRAVTERNQKKALDLYNDLLTLKEPPMRILFLLAKQFNQL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + E E Q + RN + ++ + + +R+ + L Sbjct: 250 MITKEMSEKGYGQPEIASQLGVPP--FVVRNYF-QIVKRYRLSQLRQAVEDFTEAEELV- 305 Query: 322 KKKYLEKNIIFQTIL 336 K L + + ++ Sbjct: 306 KTGRLGDVLSVELLI 320 >gi|167035838|ref|YP_001671069.1| DNA polymerase III subunit delta [Pseudomonas putida GB-1] gi|166862326|gb|ABZ00734.1| DNA polymerase III, delta subunit [Pseudomonas putida GB-1] Length = 351 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 117/305 (38%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 24 PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 80 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + +++I ++ + K + Sbjct: 81 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDGSAQKTKWGKALIEGAH 140 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 141 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 200 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 201 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 259 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + + L + + + +K + + +R ++ ++L+ + + + +I Sbjct: 260 ELRQLAGL-AQQFSQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 318 Query: 314 DHRIH 318 D +I Sbjct: 319 DAQIK 323 >gi|170719811|ref|YP_001747499.1| DNA polymerase III subunit delta [Pseudomonas putida W619] gi|169757814|gb|ACA71130.1| DNA polymerase III, delta subunit [Pseudomonas putida W619] Length = 351 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 24 PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADASF---DWGTLLQAGASLSLFA 80 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + ++++ ++ + K + + Sbjct: 81 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLVSLPKLDGSAQKTKWGKALIEGSH 140 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 141 CQFIQIWPVDAQQLPQWISQRLAQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLA- 199 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 200 DGSQVTVETVQAAVADSARFDVFGLVDAILNGEAVHALRMLEGLRGEGVEPPVILWALAR 259 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + +LL + + +K + + +R ++ ++L+ + + + +I Sbjct: 260 ELRLLAGLSQQF-SQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 318 Query: 314 DHRIH 318 D +I Sbjct: 319 DAQIK 323 >gi|291563976|emb|CBL42792.1| DNA polymerase III, delta subunit [butyrate-producing bacterium SS3/4] Length = 325 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 119/315 (37%), Gaps = 13/315 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++ +G + L+ + ++ I ++ ++++ IS ++ F Sbjct: 14 RRVYLLFGDEPFLVNSYKKRLREAIIGDDTMNYNYFEGKGPDVKEIIS----LADTMPFF 69 Query: 81 SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++++LI+ K L I + + ++ NE+ K N L K + Sbjct: 70 AERRLVLIDGSGFFKSSAPEELVNYIPEIPESTCMVFVENEVDKRNKLYKKVKDNGYAAE 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + LM L K I+++ + + G D R EL+KL Y + Sbjct: 130 LK--KQDADQLMRWAAGILSKDGKKITRQVMEYFMERTGDDMENIRMELEKLICYTMGRE 187 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +IT++ V+ + I E++ A + G A+ L + L K P ++ ++F Sbjct: 188 VITKEDVEVVGTVHVTNRIFEMVTAIVAGNTRKAMDLYEDLLTLKEPPMRIMFLIAKQFN 247 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316 L ++ + E + + ++ ++ R + + + + + + Sbjct: 248 QLLQVKELAGKGAQKSEIASRVKVPP--FVAGKLMAQA-RAFTREQILSYVEFCVESEEA 304 Query: 317 IHLARKKKYLEKNII 331 + R L ++ Sbjct: 305 VKTGRLSDRLAVELL 319 >gi|225027579|ref|ZP_03716771.1| hypothetical protein EUBHAL_01836 [Eubacterium hallii DSM 3353] gi|224955095|gb|EEG36304.1| hypothetical protein EUBHAL_01836 [Eubacterium hallii DSM 3353] Length = 327 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 112/288 (38%), Gaps = 6/288 (2%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V++ G + L+ KN I D + +I +++T + F Sbjct: 14 HKVYLLTGDEPYLVL-QAKHMLKNAMIKEGDTMNYAAFTDGKI--DLNTLQELAFTYPFF 70 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 S+K+++L++ K D I+ III E+ K + + K +K V Sbjct: 71 SEKRLLLLDGTGILKTGKDEFVSIMENMPETTCIIICEPEVDKRSKVYKWIKKNGYVGEF 130 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + L+ I L +K I + + L G D +NE+ KL +Y + Sbjct: 131 LKKNQTEKVLLRWIAALLGKEKKQIRENNARYFLQKTGDDMFQIKNEIDKLIAYAGDREE 190 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT+ + + I ++++A + A+ + + K P +L ++++++ Sbjct: 191 ITQADIDAVASGEVQDKIFDLVDAIARKNKAAALSYYNDLILLKEPPMHILFLIVRQYRI 250 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L I + I + +++N ++ LR + + ++ + Sbjct: 251 LHII-ANMRGLRKPDDAIAKTAGIPRFAIRKN--EQQLRGYGEKMLEK 295 >gi|210609806|ref|ZP_03288113.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787] gi|210152733|gb|EEA83739.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787] Length = 326 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 60/314 (19%), Positives = 126/314 (40%), Gaps = 17/314 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNIS---ITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 +++ YG + L Q+K + + D + I + + Sbjct: 16 IYLLYGEEAYLK----KQYKDKLHYAIVPPDDTMNYAYYEGKGINAKE--VIDLAETLPF 69 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F+++++I++EN K L + I + +I +EI K L K A+ V+ Sbjct: 70 FAERRLIILENSGFFKNASPELSDYIKELPETTSMIFVESEIDKRGKLYKAAKDKGRVVE 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + ++ L+ I S+ K ++++ + L +G D + EL+KL Y L+ Sbjct: 130 LG--RQDESTLLRWIAGSVRRENKQVTEQVIRFFLTKVGTDMENIQRELEKLFCYTLDKS 187 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT Q V++I I +++NA + + A+ +A K P +L ++F+ Sbjct: 188 EITAQDVEEICTTQITNQIFDMVNAVAEKQQRKALDYYYDLVALKEPPMRILFLLTRQFR 247 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316 LL ++ + ++I K + + + QE R ++ +RE + ++ Sbjct: 248 LLLEVK-DMDKRGYPRKEIASKVGLHPFVVGK--YQEQARAFSSKALREIIEDSVDMEEA 304 Query: 317 IHLARKKKYLEKNI 330 + R L + Sbjct: 305 VKTGRLSDMLGVEL 318 >gi|148549873|ref|YP_001269975.1| DNA polymerase III subunit delta [Pseudomonas putida F1] gi|148513931|gb|ABQ80791.1| DNA polymerase III, delta subunit [Pseudomonas putida F1] Length = 345 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 117/305 (38%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + +++I ++ + K + Sbjct: 75 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGAH 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + + L + + + +K + I +R ++ ++L+ + + + +I Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|313500775|gb|ADR62141.1| HolA [Pseudomonas putida BIRD-1] Length = 345 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 118/305 (38%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + +++I ++ + K + T Sbjct: 75 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGTH 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + + L + + + +K + I +R ++ ++L+ + + + +I Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|253579922|ref|ZP_04857190.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848921|gb|EES76883.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 328 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 120/314 (38%), Gaps = 9/314 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L + K ++ D + I ++ + + F++ Sbjct: 16 VYLLYGEEAYLKQQYKQNLVKALNPD-GDTMNFNHYEGKGI--DVKQLIDLCETMPFFAE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++L+E+ K + L + + + ++ E+ K N + K + S+ Sbjct: 73 RRVVLLEDTGFFKNKCEELADYMKELPDYLYLVFAETEVDKRNRMYKAVKACGSIA--EF 130 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ LM L K I++ ++LL G D R E++KL SY ++T Sbjct: 131 IRQDEKTLMRWAAGILGKAGKKITQRDMELLLTKTGTDMGNLRMEMEKLISYTEGRDVVT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + +++I I +++ A + A+ L L K P +L ++++ L Sbjct: 191 AEDIEEICTTQTTNRIFDMVRAVTEKNQKRALELYYDLLTLKEPPMRILFLLAKQYRQL- 249 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + ++ +I K ++ + R + + + + + + K Sbjct: 250 LLAKQFAAAGLAQTEIASKLGVPGFVVR--NITTCARAYTISELEQAVKDFVDAE-ESVK 306 Query: 323 KKYLEKNIIFQTIL 336 LE + + ++ Sbjct: 307 TGRLEDKLSVELLI 320 >gi|26991476|ref|NP_746901.1| DNA polymerase III subunit delta [Pseudomonas putida KT2440] gi|24986554|gb|AAN70365.1|AE016678_6 DNA polymerase III, delta subunit [Pseudomonas putida KT2440] Length = 345 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 116/305 (38%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + +++I ++ + K + Sbjct: 75 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGAH 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + + L + + +K + I +R ++ ++L+ + + + +I Sbjct: 254 ELRQLAGLAQQF-SQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|325276213|ref|ZP_08142012.1| DNA polymerase III subunit delta [Pseudomonas sp. TJI-51] gi|324098642|gb|EGB96689.1| DNA polymerase III subunit delta [Pseudomonas sp. TJI-51] Length = 345 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + ++ D + +A + T S SLF+ Sbjct: 18 PVYVVSGDDPLLCQEAADAIRQAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + ++++ ++ + K + Sbjct: 75 QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLVSLPKLDGSAQKTKWGKALIEGAH 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 135 CQFIQIWPVDAHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 GNQ-ITVETVQSAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVVLWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313 + + L + + + +K + + +R ++ ++L+ + + + +I Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|104783756|ref|YP_610254.1| DNA polymerase III subunit delta [Pseudomonas entomophila L48] gi|95112743|emb|CAK17471.1| DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudomonas entomophila L48] Length = 345 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G D L E + + D + +A + S SLF+ Sbjct: 18 PVYIVSGDDPLLCQEAADAIRGAARQQGFDERQVFSADANF---DWGNLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 QRRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALIEGEH 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S ++A ++ A + G+ +A+ E++KL Sbjct: 135 CQFVQIWPVDAQQLPQWINQRLSQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 195 GNQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKI 313 + +LL + + + +K + + +R ++ ++L+ + + + +I Sbjct: 254 ELRLLAGLALQF-SQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAMLLQDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|238917138|ref|YP_002930655.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750] gi|238872498|gb|ACR72208.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750] Length = 324 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 12/312 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG ++ L + ++ K I+ D + ++ ++ + + F++ Sbjct: 16 VYLLYGEEEYLKKQYRDRLKNAIAGD--DTMNYSYYDSD--NASVKDIIDVCETLPFFAQ 71 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 K+++++EN K D L + I +I++ ++ K N + K + V + Sbjct: 72 KRLVIMENTGFLKSSNDELADYIKHIPDYLVIVMVEKDVDKRNKVYKAVDSVGYVCEMK- 130 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 P L I L IS+EA ++L G R E++KL SYC ++T Sbjct: 131 -PQTTATLEKWIAGLLAKDNLKISREACDLILDKTGAGMDYIRQEIEKLVSYCQGRNVVT 189 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ + +I ++I+A K A+ L L K P +L+ +++F + Sbjct: 190 AEDVEKVCATQTTSHIFDMISAIANKKQQQALDLYYDLLELKEPPMRILYLIVRQFNGIL 249 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 ++ + IS ++I K + + Q + + N + + L+ K + + Sbjct: 250 QVKDLM-SRGISGKEIASKIGAAPFVVGK--YQAQAKYFEMNTLLDALNECAKTEEAVKQ 306 Query: 320 ARKKKYLEKNII 331 R L +I Sbjct: 307 GRLNDRLGVELI 318 >gi|323483818|ref|ZP_08089196.1| hypothetical protein HMPREF9474_00945 [Clostridium symbiosum WAL-14163] gi|323402840|gb|EGA95160.1| hypothetical protein HMPREF9474_00945 [Clostridium symbiosum WAL-14163] Length = 323 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 18/316 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWNEINSTS 78 V++ YG + L + K+ ++ ++ F L+ E+ + + Sbjct: 15 KVYLLYGEESFLKQSYKKKLKEAVAGDDTMNYNYFEGKGLDVNELIS----LSD---TMP 67 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 FS K++I+IE+ K + L + + I+ + + K N L K ++ Sbjct: 68 FFSDKRLIIIEDSGFFKTSSEALADYLPMIPDTTCIVFVEDGVDKRNRLFKKVKELGHAA 127 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L L + I+ + L G D R EL+KL SY + Sbjct: 128 EMK--RQDSAQLARWAGTILAQNGRKITGSTMNLFLERTGDDMENIRMELEKLISYTMGS 185 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++T + V+ + I +++NA + K A+ L + L K P +L ++F Sbjct: 186 DVVTTEDVEAVTTVQVTNKIFDMVNAIVTRKTRLAMDLYEDLLTLKEPPMRILFLIARQF 245 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDH 315 L + I K + + + + + + + + + Sbjct: 246 NQLLLVK-EMTAKGTDRGTIASKLKIPPFVAGK--VSAQAGAFTREQILSYVKGCVEAEE 302 Query: 316 RIHLARKKKYLEKNII 331 + + + ++ Sbjct: 303 AVKTGKMNDRMAVELL 318 >gi|283795071|ref|ZP_06344224.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1] gi|291077412|gb|EFE14776.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1] Length = 415 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 12/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G ++ L + ++ I+ ++ +++++ + N+ FS Sbjct: 107 RFYLLFGEEEFLKQSYKKRLREAIAGDDTMNYNYFEGKGMDVRE----LISLANTMPFFS 162 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++IL+E+ K D L E + ++ + + K N L K ++ + Sbjct: 163 ERRLILVEDSGFFKAASDELVEAMADIPDTTCMVFVESAVDKRNRLYKKVKELGYAAELK 222 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + L L + I+ ++ L G D +EL+KL SY + ++ Sbjct: 223 --KQDASQLARWAAGILARNGRKITAATMELFLEKTGDDMETISSELEKLISYTMGREVV 280 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T + V+ + I E++NA + GK A+ L + L K P +L ++F L Sbjct: 281 TAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKEPPMRILFLIARQFNQL 340 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIH 318 + + + + ++ ++ R + + + E + + + Sbjct: 341 FLTKELLDSGADRAAIASKLKVPP--FVAGKLMPQA-RSFTREQIAGCVEACVEAEEAVK 397 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 398 TGRLGDRMAVEL 409 >gi|254236882|ref|ZP_04930205.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa C3719] gi|126168813|gb|EAZ54324.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa C3719] Length = 345 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + ++ F + E + S SLF+ Sbjct: 18 PVYVISGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K++I + + K L+E + + + ++++ ++ + K A+ + Sbjct: 75 EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGNA 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S S EA +++ A + G+ +A+ E++KL Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I V+ + D+ + +I+A + G+ +A+ + + + +L G + Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +LL + + I EK + + +R +L +L+ + + + L Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310 >gi|109897885|ref|YP_661140.1| DNA polymerase III, delta subunit [Pseudoalteromonas atlantica T6c] gi|109700166|gb|ABG40086.1| DNA polymerase III, delta subunit [Pseudoalteromonas atlantica T6c] Length = 340 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 130/324 (40%), Gaps = 18/324 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + INQ ++ + D +V +A + +T + SLFS Sbjct: 18 PFYLIFGDEPQQKLTAINQIRELATEQGFDERQTLVADAQF---DWATLLEATQTLSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 ++ I +E + L E+ +N + +++I +I K+ K + Sbjct: 75 SRQYIELELPTGKPGTQGSKILTELSAQNNPDILLVIHGAKIGKDVQNSKWFKAIDKHGT 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + CYP L + E + ++ + ++L G+ +A+ E++KL + Sbjct: 135 YVPCYPLEGNALQQWLMEQMRTQGLHVTPDVTRLLAEYCEGNLLAASQEIEKLCL-LYPN 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 T + V+ + D + ++I+ + G ++ + + + + ++ +++ Sbjct: 194 GNPTIEEVEQAVVDQSRYNVFQLIDVLLAGDSQKSVKMLYRLESEGVEPNIIMWALTREW 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI---DH 315 Q L + + + I + I ++ + +L+ + +++ HK+ D Sbjct: 254 QTLRALQA-----SKQAGQAINWNQHRIWKNRQGMYLSALQRLSPIHMQQLQHKLNIMDS 308 Query: 316 RIHLAR-KKKYLEKNIIFQTILYI 338 + ++ ++ Y+E + +L+I Sbjct: 309 ALKQSQVERPYVE--LCHLCLLFI 330 >gi|302671159|ref|YP_003831119.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus B316] gi|302395632|gb|ADL34537.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus B316] Length = 336 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 5/251 (1%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L + ++ K ++ + + N + + S Sbjct: 26 RCYLVYGEEAYLRNQNRDKLVKALAGDPAS-MNFSRYEGDSL--NPGEIIDMAETMPFLS 82 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++IL+EN K L E + I E+ K + K I Sbjct: 83 DKRVILVENSGFFKSGCAELAEYLKNPSETTFFIFAEKEVDKRKDIYKTV--SKIGFEIC 140 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 C ++ L I + K IS A L+ +G D EL+KL YCL+ I Sbjct: 141 CDEQDERMLSSWIASKVKSEDKIISPRALSFLIDRVGTDMSNISTELEKLICYCLDRSEI 200 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 TE+ ++ + + I + +A ++ AI L LA K P +L ++F L+ Sbjct: 201 TEEDIEAVCANWLTNRIFAMTDAIVEKNQKRAIDLYYDLLALKEPPAKILALITRQFNLM 260 Query: 262 EKIHIIKECSN 272 ++ + E Sbjct: 261 LQVKEMNENHR 271 >gi|89052900|ref|YP_508351.1| DNA polymerase III, delta subunit [Jannaschia sp. CCS1] gi|88862449|gb|ABD53326.1| DNA polymerase III, delta subunit [Jannaschia sp. CCS1] Length = 343 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 109/333 (32%), Gaps = 22/333 (6%) Query: 25 IFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G D + + + + + L + +++ + + + + + F Sbjct: 23 LIFGDDAMRVALKRQDLLAALLGAAAEEEMRLTRMTGADLRSDSAGLLDAVKAVGFFPGP 82 Query: 84 KIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + +L+E + K EE + II + + + LRK+ E A + Sbjct: 83 RAVLVEGATDGLAKVFTAAFEEW---QDGDAQIIATAGRLTAKSALRKVFEGNKRAYAAA 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNELQKLSSYCL 196 Y D IE+ L + +EA L GD R + KL Y Sbjct: 140 IYDDPPGRAE--IEDMLKAAGITNTDREAMVDLEGLARSIGPGD---FRQMVDKLGLYKR 194 Query: 197 EDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D + ++ + T +++I++AT + + + +L L Sbjct: 195 GDATPVLPADIEAVAPLTREAELDDILHATAEAETGAIGPILVRLKQQGTTPVSLCIAAL 254 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + F+ L + +Q + +R+ + W ++ + L + Sbjct: 255 RHFRALHSAAAHPDG----PAAGLQAMRPPVFGPRRDRMARQASRWGQSALEAALSMLVE 310 Query: 316 RIHLARK-KKYLEKNIIFQTILYIAQTACKNNN 347 R + ++ +T++ +A + Sbjct: 311 TDLTLRSASTAPQMAVMERTLIRLAMLPGRGRR 343 >gi|197301864|ref|ZP_03166933.1| hypothetical protein RUMLAC_00590 [Ruminococcus lactaris ATCC 29176] gi|197299094|gb|EDY33625.1| hypothetical protein RUMLAC_00590 [Ruminococcus lactaris ATCC 29176] Length = 328 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 127/324 (39%), Gaps = 12/324 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L + +F K + D + I + + + F++ Sbjct: 16 VYLLYGEEGYLKKQYKKRFIKAMIPE-GDTMNYAHYEGKNI--PVKEVIDLAETMPFFAE 72 Query: 83 KKIILIENLSTEKKVL-DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++I+ EN K L + I + I E+ K N L K A++ Sbjct: 73 KRLIVFENTGFFKTAAGAELADYIKEMPETTYFIFVEEEVDKRNKLYKAVNTKGYAAALT 132 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ L I + L K +S L +G D + EL+K+ Y ++ + Sbjct: 133 --MQDEEVLKRWIGQILRREGKEMSGATISYFLGKVGTDMENIQRELEKVICYGIDKATL 190 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T + + + +I ++++A G A+ L +A K P +L+ ++++ L Sbjct: 191 TREEIDAVCVTQLSNHIFDMVDAVAAGNQRKALDLYYELIALKEPPMRILYMLTRQYRSL 250 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + + ++I K + + ++++ + + +R+++ + + A Sbjct: 251 YFVKALM-NQGYGKKEIASKAGLHPFVVGKSMV--QCKRFRMGQLRQSMEE-GAGLEQAV 306 Query: 322 KKKYLEKNIIFQTILYIAQTACKN 345 K L +N+ + L+I + + K Sbjct: 307 KTGTLSENLAVE--LFIVKQSEKR 328 >gi|107103507|ref|ZP_01367425.1| hypothetical protein PaerPA_01004577 [Pseudomonas aeruginosa PACS2] gi|116052028|ref|YP_789129.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa UCBPP-PA14] gi|218889728|ref|YP_002438592.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa LESB58] gi|254242675|ref|ZP_04935997.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 2192] gi|296387482|ref|ZP_06876957.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PAb1] gi|313109430|ref|ZP_07795390.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 39016] gi|115587249|gb|ABJ13264.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126196053|gb|EAZ60116.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 2192] gi|218769951|emb|CAW25713.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa LESB58] gi|310881892|gb|EFQ40486.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 39016] Length = 345 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + ++ F + E + S SLF+ Sbjct: 18 PVYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K++I + + K L+E + + + ++++ ++ + K A+ + Sbjct: 75 EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGNA 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S S EA +++ A + G+ +A+ E++KL Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I V+ + D+ + +I+A + G+ +A+ + + + +L G + Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +LL + + I EK + + +R +L +L+ + + + L Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310 >gi|302385261|ref|YP_003821083.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1] gi|302195889|gb|ADL03460.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1] Length = 323 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 124/314 (39%), Gaps = 14/314 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L NQ K ++ F+ +++++ IS + + F+ Sbjct: 15 PVYLLYGEEAFLKNSYKNQMKAAVTAGDTMNFNQFEGKGIDVREIIS-LGD---TMPFFA 70 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +K++IL+EN K + + + + +I +E+ K + + K ++ + Sbjct: 71 EKRLILVENSGFFKSASEEMASYLSQIPDTTCLIFVESEVDKRSKMFKKVKELGYAAEME 130 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + L L K I+ ++ L G D R EL+KL SY L +I Sbjct: 131 --RQDMAQLSRWAGTLLSREGKKITGHTMELFLNMTGDDMENIRMELEKLISYTLGREII 188 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T++ V+ I I +++ A + + A+ L + L K P +L ++F L Sbjct: 189 TDEDVETICTVRTTNKIFDMVAAIVNRQTKKAMDLYEDLLTLKEPPMRILFLIARQFNQL 248 Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRI 317 ++ + + I K + I+ ++ R +++ + ++ + + + Sbjct: 249 LQVKELM-GKGMDKGGISSKLKIPP--FAAGKIMPQA-RTFSREQILSYVNLCVEAEEAV 304 Query: 318 HLARKKKYLEKNII 331 R + ++ Sbjct: 305 KTGRLNDRMAVELL 318 >gi|323692782|ref|ZP_08107009.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323503096|gb|EGB18931.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 323 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 18/316 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWNEINSTS 78 V++ YG + L + K+ ++ ++ F L+ E+ + + Sbjct: 15 KVYLLYGEESFLKQSYKKKLKEAVAGDDTMNYNYFEGKGLDVNELIS----LSD---TMP 67 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 FS K++I+IEN K + L + + I+ + + K N L K ++ Sbjct: 68 FFSDKRLIIIENSGFFKTSSEALADYLPMIPDTTCIVFVEDAVDKRNRLFKKVKELGHAA 127 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L L + I+ + L G D R EL+KL SY + Sbjct: 128 EMK--RQDSAQLARWAGTILAQNGRKITGSTMNLFLERTGDDMENIRMELEKLISYTMGS 185 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++T + ++ + I +++NA + K A+ L + L K P +L ++F Sbjct: 186 DVVTTEDMEAVTTVQVTNKIFDMVNAIVTRKTRLAMDLYEDLLTLKEPPMRILFLIARQF 245 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDH 315 L + I K + + + + + + + + + Sbjct: 246 NQLLLVK-EMTAKGTDRGTIASKLKIPPFVAGK--VSAQAGAFTREQILSYVKGCVEAEE 302 Query: 316 RIHLARKKKYLEKNII 331 + + + ++ Sbjct: 303 AVKTGKMNDRMAVELL 318 >gi|330887938|gb|EGH20599.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. mori str. 301020] Length = 345 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 120/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDPLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPGDVGQLPQWIRQRLSQAGLAATQDALELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVEPPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|15599184|ref|NP_252678.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PAO1] gi|9950180|gb|AAG07376.1|AE004816_12 DNA polymerase III, delta subunit [Pseudomonas aeruginosa PAO1] Length = 345 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + ++ F + E + S SLF+ Sbjct: 18 PVYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K++I + + K L+E + + + ++++ ++ + K A+ + Sbjct: 75 EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLGLPKLDGSTQKTKWAKALIDGNA 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S S EA +++ A + G+ +A+ E++KL Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I V+ + D+ + +I+A + G+ +A+ + + + +L G + Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +LL + + I EK + + +R +L +L+ + + + L Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310 >gi|330811917|ref|YP_004356379.1| DNA polymerase III, delta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380025|gb|AEA71375.1| putative DNA polymerase III, delta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 345 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 122/305 (40%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYIISGDDPLLCQEAADAIRSAARQQGFDERQVFAADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K+++ + + K L E + + +++I ++ + K + Sbjct: 75 EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGPQ 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S S++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDVSQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + + +A + G+ +A+ + + + +L + Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLTDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + +LL + + + +K + + ++ ++ ++L+ ++ + + L +I Sbjct: 254 ELRLLANLSLQY-SQGVPLDKAFSQARPPVWDKRKPLMSKALQRYSASRWAQLLLEAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|253699413|ref|YP_003020602.1| DNA polymerase III subunit delta [Geobacter sp. M21] gi|251774263|gb|ACT16844.1| DNA polymerase III, delta subunit [Geobacter sp. M21] Length = 329 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 114/314 (36%), Gaps = 12/314 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + K +++ YG + L+ + + + F+L V E Sbjct: 1 MKPEEFSKAVDKGELA--PLYLLYGDEPYLVERAVKKLLERAVDPSFRDFNLNVFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + ++ + +F++++++L++ ++ L + +I+++ ++ Sbjct: 59 KGDE--VFSAAQTLPMFAERRVVLVKKGGELSAGAMEILLSYVQDPCPGTCLILQAEKVD 116 Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 +K + Y L + + + K I A ++L +G + Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIDAAAAELLAYLVGNNL 173 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 ++++KL YC + I VK I+ DT V + E +A ++ A+ + L Sbjct: 174 QELVSQIEKLCIYCGKKESIGVADVKAIVSDTKVESVFEFTDALGAKELPRALRMLTSLL 233 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 +L + ++ L ++ + + E K + + R + Sbjct: 234 QDGEAPLRILGAVSRHYRQLWQVRELLDRRLPPAELAKASGINPYFLKK---VTDQARNY 290 Query: 302 NKNLVRETLHKIDH 315 +++ ++ Sbjct: 291 TVGELKQVFERMLE 304 >gi|146279167|ref|YP_001169326.1| DNA polymerase III, delta [Rhodobacter sphaeroides ATCC 17025] gi|145557408|gb|ABP72021.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides ATCC 17025] Length = 330 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 124/340 (36%), Gaps = 26/340 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63 E+ +++ K + + +G D + + I L + A ++ Sbjct: 7 EAVRYLAKPDP----ARAGLLVFGQDAMRVALKRQEAILGLIGAEGAAEMRLTRIPASDL 62 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122 +++ + + + + F + +L+E + + D + +++ + + +++ + + Sbjct: 63 RRDPAALMDAMMAKGFFDGPRAVLLEEATD--GLADLIGKVLREWRPGDAQVVVTAGGLT 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180 + L+K+ E + + I Y D + I+ L I A L A D Sbjct: 121 GRSALKKLFEAHPNAVCIGLYDDPP--TREEIDTMLRQAGLGRIDPAAMAGLAALARDLD 178 Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 R ++KL+ Y L D ++ + ++ + ++E+I+A +G+ Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSSADLAEMAPASIEAGVDEVIHAVAEGRRAEVSPFVRR 238 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A + + AL G ++ F+ L +I E ++ +Q R Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRIAAGAEPGRGG------------FNPRQERMQRQAR 286 Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338 W + + E L + R + ++ + ++ + Sbjct: 287 QWGVSRLEEALTLLVETDLTLRSASRAPAMAVMERALIRL 326 >gi|291528954|emb|CBK94540.1| DNA polymerase III, delta subunit [Eubacterium rectale M104/1] Length = 336 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 117/312 (37%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + + D + I + + + F+ Sbjct: 15 KVYLLYGQERYLIKQYRDKLIKAM-VNEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++ILIE+ K D L E + + + I + K + L K A K + + Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L I + K +S+ A + G D EL+KL YC++ +I Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + + + E+++A K A+ L LA K P+ +++ ++F +L Sbjct: 190 ELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318 + + I K +++ Q R ++ + ++ + + + Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRMNDQMAVEL 318 >gi|291548510|emb|CBL21618.1| DNA polymerase III, delta subunit [Ruminococcus sp. SR1/5] Length = 364 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 117/325 (36%), Gaps = 11/325 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L + K ++ D + I ++ + ++ F++ Sbjct: 49 AYLLYGEEAYLKQQYKRNLVKALNPD-DDTMNFTRYEGKGI--DVRELLSLCDTMPFFAE 105 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++++L+E+ K + L + + ++ +E+ K + + K + +I Sbjct: 106 RRVVLLEDTGFFKNKCEELADYMKALPDYLYLVFCESEVDKRSRMYKAV---KACGSIGE 162 Query: 143 YPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + ++ LM L + I++ ++LL G D R EL+KL SY + ++ Sbjct: 163 FKQQDEKTLMRWAAGILGKNGRRITQRDVELLLTMTGTDMGNIRMELEKLISYTVGRDVV 222 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T ++ + I +++ A + A+ L L + P +L ++F+ + Sbjct: 223 TAADIQAVCTTQTTNKIFDMVRAVTEKNQKRALDLYYDLLTLREPPMRILFLLAKQFRQI 282 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 +S +I K ++ L R + + + A Sbjct: 283 CLTKK-MSQEGLSQTEIASKLGVPSFVVR--NLASCARSYTVEELENAVRDFVDAE-EAV 338 Query: 322 KKKYLEKNIIFQTILYIAQTACKNN 346 K L + + ++ +A Sbjct: 339 KTGTLGDVLSVELLIVKYSSARAVR 363 >gi|152989624|ref|YP_001346505.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PA7] gi|150964782|gb|ABR86807.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa PA7] Length = 345 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 118/297 (39%), Gaps = 10/297 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + L E + ++ F + E + S SLF++ Sbjct: 19 VYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFAE 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 K++I + + K ++E + + + ++++ ++ + K A+ A Sbjct: 76 KRLIELRLPSGKPGDKGAAIIQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGGAA 135 Query: 140 --ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I +P + L I + L S S EA +++ A + G+ +A+ E++KL Sbjct: 136 QFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAEG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + I V+ + D+ I +I+A + G+ +A+ + + + +L G ++ Sbjct: 196 NQ-IDAATVQAAVADSARFDIFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLARE 254 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 +LL + + I EK + + +R +L +L+ + + + L Sbjct: 255 IRLLAGL-AQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310 >gi|291524724|emb|CBK90311.1| DNA polymerase III, delta subunit [Eubacterium rectale DSM 17629] Length = 336 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 118/312 (37%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + ++ D + I + + + F+ Sbjct: 15 KVYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++ILIE+ K D L E + + + I + K + L K A K + + Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L I + K +S+ A + G D EL+KL YC++ +I Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + + + E+++A K A+ L LA K P+ +++ ++F +L Sbjct: 190 ELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318 + + I K +++ Q R ++ + ++ + + + Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRMNDQMAVEL 318 >gi|153854187|ref|ZP_01995495.1| hypothetical protein DORLON_01486 [Dorea longicatena DSM 13814] gi|149753236|gb|EDM63167.1| hypothetical protein DORLON_01486 [Dorea longicatena DSM 13814] Length = 326 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 112/312 (35%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L + ++ K I D + I N + + F+ Sbjct: 15 PVYLLYGEEAYLKKQYRDRITKAIFPD-GDTVNYAYYEGKGI--NPGELIDLAETMPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K+++I++EN K L + I + NE K + K + V+ ++ Sbjct: 72 KRRLIVVENSGFFKNATPDLADYIKTMPDTACFLFVENEADKRGKMYKAVKSKGRVVEMA 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ L+ + ++ I ++ + LL+ G D EL+KL YC+ I Sbjct: 132 --RQDEKTLLYWVAGNVKKEGYKIKEQTARYLLSTTGTDMENLEKELEKLFCYCMGKEEI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 ++ I I +++ A A+ LA K P +L+ ++F+LL Sbjct: 190 EISDIEAICTTQITNKIFDMVEAVAMKNQKKALDYYYDLLALKEPPMRILYLLTRQFKLL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318 ++ + I + + + + + R + K +R L + + Sbjct: 250 LEVKDLV-GKRYDKSSIAKTVGLHPFVAGKYM--QQCRTFEKKELRNILEEAVDTEEMVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRLNDVMSVEL 318 >gi|313905056|ref|ZP_07838426.1| DNA polymerase III, delta subunit [Eubacterium cellulosolvens 6] gi|313470126|gb|EFR65458.1| DNA polymerase III, delta subunit [Eubacterium cellulosolvens 6] Length = 325 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 114/308 (37%), Gaps = 5/308 (1%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ YG ++ L + + K + D + ++ + ++ + F Sbjct: 14 RQTYLLYGEEEYLKSQYRDLLLKALVPD-RDSMNYNHYAGKDV--DEGAIISQAETMPFF 70 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 + +++I+IE+ KK + L + + + ++I +E+ K N L K K + Sbjct: 71 ADRRVIVIEDSGLFKKKSEKLADYMAELPDYLVMIFVESEVDKRNRLFKAVGKSGRTVVF 130 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 N+ L I + + K I++ Q L G D +EL+KL +Y ++ + Sbjct: 131 D--TQNEETLTRWILQRMGKEGKKITRNDMQHFLEVTGTDMANINSELEKLLAYTMDSDV 188 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT + + + I E++ A + + A+ LA K P +L+ ++F + Sbjct: 189 ITGEDIDAVCAPQISNKIFEMVRAVAEHRQKEALDYYYDLLALKEPPMRILYFLAKEFNM 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + E + + K L + + ++ + Sbjct: 249 LLVVKTMAVAGFANREIASKIGRPPFVVSKSMGLIRNYTSAQLENIVRDFTDMEEAVKTG 308 Query: 321 RKKKYLEK 328 R + Sbjct: 309 RMTDTVSV 316 >gi|222055266|ref|YP_002537628.1| DNA polymerase III, delta subunit [Geobacter sp. FRC-32] gi|221564555|gb|ACM20527.1| DNA polymerase III, delta subunit [Geobacter sp. FRC-32] Length = 330 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 118/326 (36%), Gaps = 13/326 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + K + YG + LI + + + I F+ + E Sbjct: 1 MKPDEFTRAVDKGSIA--PFYYLYGDEPYLIEKGVKRLLDRIVSADFRDFNFNIFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + ++ + +F+ ++ IL++ LD L + +I + +I Sbjct: 59 KG--EEIFSAAQTLPMFADRRAILVKKSQDLSAAALDVLLTYLQNPSPTTCLIFQGEKID 116 Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 + +K ++ Y L I E + K I A +L +G + Sbjct: 117 QRKKFFAEIKKSDCLVEFKRPYE---NQLGAFIREEIKACGKRIDPAAADLLAYMVGNNL 173 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 ++++K+ +YC I +K ++ DT V + E+ +A + A+ L Sbjct: 174 QELASQIEKVVTYCGGRDSILMDDIKAVVSDTKVDTVFELADAVGEKDPTKAMRTLYTIL 233 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 LL + F+ L ++ + + +S +I + N + + ++ ++ Sbjct: 234 RDGEAPLMLLAMLARHFRQLWRVRELMDR-RVSSAEIGKSAGINPYFL-KKVMDQARNYR 291 Query: 302 NKNL--VRETLHKIDHRIHLARKKKY 325 L + E L ++D + + K Sbjct: 292 TAELKVIFERLLELDSALKTSGGKPA 317 >gi|332307122|ref|YP_004434973.1| DNA polymerase III, delta subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174451|gb|AEE23705.1| DNA polymerase III, delta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 340 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 135/343 (39%), Gaps = 21/343 (6%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + ++F K L ++ +G + INQ ++ D +V +A Sbjct: 2 QVYPNRFAASLNKGLQ---PFYLIFGDEPQQKLTAINQIREIALAQGFDERQTLVADAQF 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + T + SLFS ++ I +E + L E+ +N + +++I + Sbjct: 59 ---DWLTLLEATQTLSLFSSRQYIELELPTGKPGTQGSKILTELSTQNNPDILLVIHGAK 115 Query: 121 IKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 I K+ K + + CYP L + E + + S + ++L G Sbjct: 116 IGKDVQNSKWFKALDKQGSYVPCYPLEGNALYQWLTEQMRTQGLNASSDISRLLAEYCEG 175 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E++KL + T + V+ + D + ++I+ + G ++ + Sbjct: 176 NLLAASQEIEKLCL-LYPNGNPTLEQVEQAVVDQSRYNVFQLIDVLLAGDSQKSVKMLYR 234 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + + + +L +++Q L + N + + I + I ++ + +L+ Sbjct: 235 LESEGVEPNIVLWALTREWQTLSALQA-----NKTAGQSINWNQHRIWKNRQGLYLSALQ 289 Query: 300 IWNKNLVRETLHKI---DHRIHLAR-KKKYLEKNIIFQTILYI 338 + +++ HK+ D + ++ ++ Y+E + +L+I Sbjct: 290 RLSPVHLQQLQHKLNVMDCALKQSQVERPYVE--LCHLCLLFI 330 >gi|238923979|ref|YP_002937495.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656] gi|238875654|gb|ACR75361.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656] Length = 336 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 118/312 (37%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG ++ LI + ++ K + ++ D + I + + + F+ Sbjct: 15 KVYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++ILIE+ K D L E + + + I + K + L K A K + + Sbjct: 72 DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L I + K +S+ A + G D EL+KL YC++ +I Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + + + E+++A K A+ L LA K P+ +++ ++F +L Sbjct: 190 ELSDVETVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318 + + I K +++ Q R ++ + ++ + + + Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306 Query: 319 LARKKKYLEKNI 330 R + + Sbjct: 307 TGRMNDQMAVEL 318 >gi|157644757|gb|ABV59086.1| DNA polymerase III delta subunit [Pseudomonas syringae pv. averrhoi] Length = 345 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDVGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|327482399|gb|AEA85709.1| DNA polymerase III subunit delta [Pseudomonas stutzeri DSM 4166] Length = 343 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 125/307 (40%), Gaps = 17/307 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + + FS + +E + S SLF+ Sbjct: 18 PVYVVCGDEHLLCQEACDAIRAATRAQG---FSERQVFHVETGFDWGQLIEAGASLSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K++I I N K L + + + + +++I ++ + K A+ Sbjct: 75 EKRLIELRIPNGKPGDKGAAALLDYLARPADDTVLLISLPKLDGSTQKTKWAKALIEGKD 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V + +P + L I + L S +EA +++ A + G+ +A+ E++KL Sbjct: 135 VQFLQIWPVDAAQLPQWIRQRLAQVGLSADQEAVELIAARVEGNLLAAAQEIEKLKLLA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I+ V+ + D+ + +I+A +QG+ +A+ + + + + +L + Sbjct: 194 DAGQISADTVQAAVADSARYDVFGLIDAALQGQAAHALHMLEGLRGEGVEAPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI-----WNKNLVRETLH 311 + +LL I + + ++ + + +R ++ ++L+ W+ + Sbjct: 254 ELRLLANI-SQQYGQGVPLDRAFSQARPPVWDKRRPLVSKALQRHDAAGWS--RLLMAAQ 310 Query: 312 KIDHRIH 318 +ID +I Sbjct: 311 RIDEQIK 317 >gi|146284082|ref|YP_001174235.1| DNA polymerase III subunit delta [Pseudomonas stutzeri A1501] gi|145572287|gb|ABP81393.1| DNA polymerase III, delta subunit [Pseudomonas stutzeri A1501] Length = 343 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 124/307 (40%), Gaps = 17/307 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + + FS + +E + S SLF+ Sbjct: 18 PVYVVCGDEHLLCQEACDAIRAATRAQG---FSERQVFHVETGFDWGQLIEAGASLSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K++I I N K L + + + + +++I ++ + K A+ Sbjct: 75 EKRLIELRIPNGKPGDKGAAALLDYLARPADDTVLLISLPKLDGSTQKTKWAKALIEGKD 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V + +P + L I + L S +EA +++ A + G+ +A+ E++KL Sbjct: 135 VQFLQIWPVDAAQLPQWIRQRLAQVGLSADQEAVELIAARVEGNLLAAAQEIEKLKLLA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I+ V+ + D+ + +I+A + G+ +A+ + + + + +L + Sbjct: 194 DAGQISADTVQAAVADSARYDVFGLIDAALHGQAAHALHMLEGLRGEGVEAPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI-----WNKNLVRETLH 311 + +LL I + + ++ + + +R ++ ++L+ W+ + Sbjct: 254 ELRLLANI-SQQYGQGVPLDRAFSQARPPVWDKRRPLVSKALQRHDAAGWS--RLLMAAQ 310 Query: 312 KIDHRIH 318 +ID +I Sbjct: 311 RIDEQIK 317 >gi|77461180|ref|YP_350687.1| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf0-1] gi|77385183|gb|ABA76696.1| putative DNA polymerase III, delta subunit [Pseudomonas fluorescens Pf0-1] Length = 345 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYIISGDDPLLCQEAADAIRSAARQQGFDERQVFAADANF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136 +K+++ + + K L E + + +++I ++ + K + Sbjct: 75 EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGQQ 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S S++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDANQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + V+ + D+ + + +A + G+ +A+ + + + +L + Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLTDAVLNGEPAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + +LL I + +K + + + ++ ++ ++L+ ++ + L +I Sbjct: 254 ELRLLANISLQY-SQGTPLDKCFSQAKPPVWDKRKPLMSKALQRYSAQRWAQLLLEAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|229592791|ref|YP_002874910.1| DNA polymerase III subunit delta [Pseudomonas fluorescens SBW25] gi|229364657|emb|CAY52583.1| putaitve DNA polymerase III, delta subunit [Pseudomonas fluorescens SBW25] Length = 345 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 122/305 (40%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVVSGDDPLLCQEAADAIRTAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +K+++ + + K E + + +++I ++ + K + Sbjct: 75 EKRLLELRLPSGKPGDKGAAAFIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFIQIWPVDSNQLPQWIRQRLSQSGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ED IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 194 EDGQITVETVQGAVADSARFDVFGLVDAILNGEPAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + ++L I + +K + + + ++ ++ ++L+ + + L +I Sbjct: 254 ELRVLANIALQY-SQGTPLDKAFSQAKPPVWDKRKPLMSKALQRHSAQRWAQLLLEAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|153813607|ref|ZP_01966275.1| hypothetical protein RUMOBE_04030 [Ruminococcus obeum ATCC 29174] gi|149830305|gb|EDM85398.1| hypothetical protein RUMOBE_04030 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 114/313 (36%), Gaps = 11/313 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + L + + ++ D + I+ + + + F+ Sbjct: 35 NAYLLFGEEAYLKIQYKEKLIHALNPD-DDTMNFTKYEGKGIE--VREMIDLCETMPFFA 91 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++L+EN K D L + + ++ E+ K + + K + ++ + Sbjct: 92 DHRVVLVENSGFFKNKCDELADYMKTLPDYLRLVFVEEEVDKRSRMYKAVKNCGRIVEFA 151 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ LM L + I+ ++ L G D R EL+KL +Y + ++ Sbjct: 152 --KQDEKTLMRWAAGILAREGRKITTRDMELFLTKTGTDMGNIRMELEKLITYTMGQDIV 209 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T + +++I I +++ A + A+ L + L + P +L ++F+ + Sbjct: 210 TREDIEEICTTRTENKIFDMVRAVTERNQRRALDLYNDLLTLREPPMRILFLLSKQFRQM 269 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI---DHRIH 318 S +I + + NIL + R ++ + + + + Sbjct: 270 CLAKK-MAGEGASQNEIATRLGVPSFVAR-NILACA-RAYSVEELEQAEEDFVDAEEAVK 326 Query: 319 LARKKKYLEKNII 331 R + L ++ Sbjct: 327 TGRLQDVLSVELL 339 >gi|312963228|ref|ZP_07777712.1| DNA polymerase III delta subunit [Pseudomonas fluorescens WH6] gi|311282494|gb|EFQ61091.1| DNA polymerase III delta subunit [Pseudomonas fluorescens WH6] Length = 345 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 122/305 (40%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYIVSGDDPLLCQEAADAIRTAARQQGFDERQVFSADASF---DWGTMLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +K+++ + + K L E + + +++I ++ + K + Sbjct: 75 EKRLLELRLPSGKPGDKGAAALMEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFIQIWPVDSSQLPQWIRQRLSQSGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ED IT + V+ + D+ + +++A + G+ +A+ + + + +L + Sbjct: 194 EDGQITVETVQGAVADSARFDVFGLVDAILNGEPAHALRMLEGLRGEGVEPPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + ++L I + +K + + ++ ++ ++L+ + + L +I Sbjct: 254 ELRVLANIALQY-SQGTPLDKCFSQARPPVWDKRKPLMSKALQRHSAQRWAQLLLEAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|237798419|ref|ZP_04586880.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021271|gb|EGI01328.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 345 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALIDGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|289648427|ref|ZP_06479770.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi str. 2250] Length = 345 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDVGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|330938267|gb|EGH41930.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. pisi str. 1704B] Length = 345 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGESAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|260590116|ref|ZP_05856029.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583] gi|331084373|ref|ZP_08333477.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|260539628|gb|EEX20197.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583] gi|330401637|gb|EGG81218.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 326 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 128/315 (40%), Gaps = 11/315 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L + + KK + + D + + + + + + F+ Sbjct: 16 VYLLYGEENYLKQQYKEKLKKAL-VQEDDSMNFSMFEGKKTE--PKAIIDLAETMPFFAD 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I +E+ K L E + + ++ N++ K N + K +K+ + Sbjct: 73 RRVIFLEDTGFFKNQCGDLPEYMAELPEYICMVFIENDVDKRNRMYKAVKKYGRAVEFG- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + +M + + K I+++ ++ L+ G D EL+KL Y ++ +IT Sbjct: 132 -VQDSNTIMRWVLGMMKREGKKITQKDMELFLSKTGTDMGNIERELEKLLCYTMDREIIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 Q ++++ +I ++I A + A+ L LA K P +L ++F L+ Sbjct: 191 AQDIENVCTTQITNHIFDMIRAVTEKNQKKALDLYYELLALKEPPMRILFLLARQFNLIM 250 Query: 263 KIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 ++ + +C + S + + +N L + R ++ +R+ + + Sbjct: 251 QVKELSKCGYDQSQIAKKAGIQP---FVVKNYLTYA-RKYSTEELRKAVEECVAAETKV- 305 Query: 322 KKKYLEKNIIFQTIL 336 K ++ + + +L Sbjct: 306 KTGFMTDTMSVELLL 320 >gi|28871929|ref|NP_794548.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato str. DC3000] gi|28855182|gb|AAO58243.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT Q V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ + ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPVWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|298488996|ref|ZP_07007019.1| DNA polymerase III delta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156494|gb|EFH97591.1| DNA polymerase III delta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|330953015|gb|EGH53275.1| DNA polymerase III subunit delta [Pseudomonas syringae Cit 7] gi|330960156|gb|EGH60416.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. maculicola str. ES4326] gi|330969447|gb|EGH69513.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aceris str. M302273PT] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|257482217|ref|ZP_05636258.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987611|gb|EGH85714.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011320|gb|EGH91376.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGMPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|320322693|gb|EFW78786.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea str. B076] gi|320330522|gb|EFW86501.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea str. race 4] gi|330873689|gb|EGH07838.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea str. race 4] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRSLANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|213966844|ref|ZP_03394995.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato T1] gi|301381975|ref|ZP_07230393.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato Max13] gi|302058765|ref|ZP_07250306.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato K40] gi|302135141|ref|ZP_07261131.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928694|gb|EEB62238.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato T1] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT Q V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|331014750|gb|EGH94806.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L S +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT Q V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ + ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPVWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|71735953|ref|YP_276512.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556506|gb|AAZ35717.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 345 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 122/305 (40%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I +++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLSKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRSLANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|330873575|gb|EGH07724.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963475|gb|EGH63735.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 345 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVDGAH 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|254482602|ref|ZP_05095841.1| DNA polymerase III, delta subunit [marine gamma proteobacterium HTCC2148] gi|214037293|gb|EEB77961.1| DNA polymerase III, delta subunit [marine gamma proteobacterium HTCC2148] Length = 337 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 118/299 (39%), Gaps = 18/299 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----INST 77 V++ G + L+ E +Q + ++ ++ N W+E +S Sbjct: 18 PVYLISGDEPLLVQECCDQVRLAARNAGCTDREVIDVS------NPGFKWDEILGSASSM 71 Query: 78 SLFSKKKIILIE---NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLF+ +K++ + + +E + I +++I + +I K +T K + Sbjct: 72 SLFADRKLVELRIPTGKPGAEGSKALVEYLNISAGSEDVLLIIAGKIDKQSTNSKWYKAL 131 Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + A+ +P + L +++ + SI +A Q+L + G+ +A+ E++KL Sbjct: 132 DNAGAAVQVWPVDAKDLPRWLQQRVSAAGMSIDNDALQLLCDRVEGNLLAAVQEVEKLKL 191 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 IT + V + + + ++ + ++G ++ + L Sbjct: 192 LAEG-GQITAETVTTSVSNNARYNLFDMTDNALKGNAAGSLKMLHGLRGEGTEPAVALWA 250 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L++ + L + + S + ++ + + + ++Q +L +++ + + + Sbjct: 251 LLREIRTLYQAQQSVD-SGQNPQQALSSLR--VWKNRIGLMQGALGRHSRDSLSHLMEQ 306 >gi|66047581|ref|YP_237422.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae B728a] gi|63258288|gb|AAY39384.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae B728a] Length = 345 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 116/299 (38%), Gaps = 10/299 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ IT + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + L + + +K+ I ++ ++ ++L+ + + L Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQR 311 >gi|331090750|ref|ZP_08339597.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330399858|gb|EGG79517.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 328 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 125/312 (40%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + L + ++ K + I+ D + I ++ + + FS Sbjct: 15 RVYLLFGEENYLKKQYKDRLTKAL-ISEGDTMNYAYYEGKGI--DVKEIIDLSETMPFFS 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++I+IEN K L E + + I E+ K + K + ++ ++ Sbjct: 72 ERRLIVIENSGFFKNATAELAEYMKEIPETTYFIFVETELDKRGKMFKAVKDKGRIVELA 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ L+ I ++ K I++ LL+ G D + E++KL Y L + +I Sbjct: 132 --RQDEKTLVRWIYGNVKKEGKQIAESTIYYLLSKCGTDMENLQKEMEKLFCYTLNNDVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + + I I +++NA + K A+ LA K P+ +L+ ++F+LL Sbjct: 190 NMEDIDAICTMQITNEIFDMVNAVAEKKQKRALDRYYDLLALKEPAMRILYLLSRQFRLL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318 ++ + I K + P E R +++ +R+ L I+ R+ Sbjct: 250 MEVK-EMAGEGYDKKTIASKAG--LHPYAVGKYIEQSRSFSQEELRKILEESVDIEERVK 306 Query: 319 LARKKKYLEKNI 330 R L + Sbjct: 307 TGRLGDVLAVEL 318 >gi|302185152|ref|ZP_07261825.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae 642] Length = 345 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ I + V+ + D+ + + +A + G+ +A+ + + + + +L + Sbjct: 194 EEGQINVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + + L + + +K+ I ++ ++ ++L+ + L +I Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHTAKRWSQLLMDAQRI 312 Query: 314 DHRIH 318 D +I Sbjct: 313 DAQIK 317 >gi|163745428|ref|ZP_02152788.1| hypothetical protein OIHEL45_07555 [Oceanibulbus indolifex HEL-45] gi|161382246|gb|EDQ06655.1| hypothetical protein OIHEL45_07555 [Oceanibulbus indolifex HEL-45] Length = 332 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 49/340 (14%), Positives = 110/340 (32%), Gaps = 23/340 (6%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64 S + + + + YGSD + + K + + L + A E++ Sbjct: 4 SPREAKPYFTRPDPARTGLLIYGSDAMRVALKRQEFLKNLLGANAEEEMRLSRMPAGELR 63 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKK 123 ++ + + I + F + L+E + L + + + II+ + ++KK Sbjct: 64 RDPAMLLDAIKAVGFFPGPRAALVEEA--NDNIAKILLDALKDWQPGDAQIIVTAGDLKK 121 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRI 182 + + K E + A Y DN + IE+ L + +A L D Sbjct: 122 TSKVLKAFESHPNAYATPIY-DNPPDRAE-IEQMLKDAGLTPEADAMAALSDLARTLDPG 179 Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 R L+K++ Y L D I + + +++I++ + + + Sbjct: 180 DFRQTLEKITLYKLGDSTPIGLDDIAACAPTSTEAEVDDILHVVAETRAAEIGPVMSKLQ 239 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + L + F+ L +I + I R+ R W Sbjct: 240 GQGVNAVTLTIMATRHFRTLYRIAA-------NPGAPIYGVR------DRDRAMRQARNW 286 Query: 302 NKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIA 339 + L + R + ++ + + +A Sbjct: 287 GAAKLETALAVLTETDLKLRSAGQHAPALALVERAFIRLA 326 >gi|325262637|ref|ZP_08129374.1| DNA polymerase III, delta subunit [Clostridium sp. D5] gi|324032469|gb|EGB93747.1| DNA polymerase III, delta subunit [Clostridium sp. D5] Length = 329 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 123/311 (39%), Gaps = 11/311 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + ++F K + D + + ++ + + F++ Sbjct: 16 IYLLYGEENYLKRQYKDRFTKAMLPD-GDTMNYAYYEGKGV--DVREVIDLAETLPFFAE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++++ EN K L + I + I NE+ K + L K + ++ + Sbjct: 73 RRLLVFENTGFFKSAGADLADYIKEMPDTTFFIFIENEVDKRSKLFKAVKAKGHIVELPF 132 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 +++ L + + K IS+ LL +G D + EL+KL Y LE I Sbjct: 133 --QDEMTLKKWVLGLVRKENKQISESTVTYLLNKVGTDMENIQKELEKLFCYTLEKDGIL 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V + +I +++NA K A+ L +A K P +L+ +++++L Sbjct: 191 PEDVDAVCVTQISNHIFDMVNAVADKKQERALELYYELVALKEPPMRILYLMTRQYRILH 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 + +K+ + + ++ + P + + + + +R + I+ R+ Sbjct: 251 Q---VKDLLKKGYGRKEIASKAGLHPFAAGKYMDQAKQFKSSELRAIMEDSADIEERVKT 307 Query: 320 ARKKKYLEKNI 330 R L + Sbjct: 308 GRLTDVLAVEL 318 >gi|255280059|ref|ZP_05344614.1| DNA polymerase III, delta subunit [Bryantella formatexigens DSM 14469] gi|255269150|gb|EET62355.1| DNA polymerase III, delta subunit [Bryantella formatexigens DSM 14469] Length = 324 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 118/313 (37%), Gaps = 11/313 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + L + ++ ++ + + D +L I N ++ + F+ Sbjct: 15 NIYLLCGEEDYLKKQYKHRLQEAL-VAPEDTVNLNCYAGKNISVNE--LIDQAETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++++IE+ K L + + + +E+ K L K + ++ Sbjct: 72 ERRLLVIEDSGFFKSASAQLAQYLENVPPTTYFLFVEDEVDKRQKLYKAVKNHGRIVEFK 131 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + L I L ++I++ A ++ L G D EL+KL Y +E +I Sbjct: 132 --RQTEDTLSRWILGILKKENRNITRRALELFLEKTGTDMNNISTELEKLLCYTMEKEVI 189 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T + V++I V I E++NA G A+ L LA K P +L ++F L Sbjct: 190 TPKDVEEICTTQTVNKIFEMVNAVSAGNNRRALDLYYDLLALKEPPMRILFLVTRQFNQL 249 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318 ++ ++ + I K + + + +R + + + + Sbjct: 250 LQVKGLR-SQGYDADSIAGKLGIQRFVAQ--GCVRQSERFTEAQLRRLVTQCVETEEAVK 306 Query: 319 LARKKKYLEKNII 331 + L +I Sbjct: 307 TGNLNEKLGVELI 319 >gi|46907709|ref|YP_014098.1| DNA polymerase III subunit delta [Listeria monocytogenes serotype 4b str. F2365] gi|47094095|ref|ZP_00231820.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|226224082|ref|YP_002758189.1| hypothetical protein Lm4b_01491 [Listeria monocytogenes Clip81459] gi|254852105|ref|ZP_05241453.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL R2-503] gi|300764854|ref|ZP_07074844.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL N1-017] gi|46880978|gb|AAT04275.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017525|gb|EAL08333.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|225876544|emb|CAS05253.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605407|gb|EEW18015.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL R2-503] gi|300514530|gb|EFK41587.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL N1-017] gi|328465523|gb|EGF36752.1| DNA polymerase III subunit delta [Listeria monocytogenes 1816] Length = 343 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|254992216|ref|ZP_05274406.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-064] Length = 343 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSKNNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|290893842|ref|ZP_06556820.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-071] gi|290556559|gb|EFD90095.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-071] gi|313608731|gb|EFR84555.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL F2-208] Length = 343 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|16803521|ref|NP_465006.1| DNA polymerase III subunit delta [Listeria monocytogenes EGD-e] gi|224500500|ref|ZP_03668849.1| DNA polymerase III subunit delta [Listeria monocytogenes Finland 1988] gi|224501579|ref|ZP_03669886.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL R2-561] gi|16410910|emb|CAC99559.1| lmo1481 [Listeria monocytogenes EGD-e] Length = 343 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|89092045|ref|ZP_01165000.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] gi|89083780|gb|EAR62997.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92] Length = 338 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 121/297 (40%), Gaps = 10/297 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + ++ + ++ ++ N+ SLF+ Sbjct: 18 PVYLITGDEPLLSEEASDLLRQTLQQQGFTEREVLHVDGSFSW---EYLLECANALSLFA 74 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +KKII + S+ KK + L++ + ++I++I ++++ ++ + A Sbjct: 75 EKKIIELRLGSSKLNKKSSEILQQYLSNPAPDNILMIIADKLDGSSKKSAWFKAIDKCGA 134 Query: 140 I-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I +P L + I + + + EA Q+L + G+ +A++ EL KLS + Sbjct: 135 IVEIWPVETAQLPNWIRQRAAQIELQLDDEAIQLLCDRIEGNLLAAKQELSKLSL-LFPN 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++T V D + D+ I + +A +QG+ + +L ++ Sbjct: 194 QMVTADAVVDAVSDSSRYDIYGLSDAALQGQSARCCKILQVLRQDGTEPPVVLWALSKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + L I + S SF+ + Q+ I ++ + +++ + + + L + Sbjct: 254 RSLAAIQ-QAQSSGQSFDAVCQRER--IWGKRKPMARQAAQRLKPQQINQALRQCAE 307 >gi|260753981|ref|YP_003226874.1| DNA polymerase III subunit delta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553344|gb|ACV76290.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 337 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 121/323 (37%), Gaps = 13/323 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + V + YG D + +Q + + ++ ++ + + +E + SLF Sbjct: 20 NAVILLYGPDIAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 S + + +E E +L L+ +I N+ +II + +K+ + L K+A +LA Sbjct: 74 SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 + Y + L+ I + Q L +R +E++K + Y D Sbjct: 132 ASYLPEGENANRLVRALGEEKGLRIRPDIAQKLAIYAENNRALLVSEIEKYTLYLNSDKN 191 Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 +T + + I D + + + I + L+ L+ Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNIALLEQELASLSDVGIEPILLIRVLLR 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + LL + +S +K+I+ + I ++ + ++L +W + + + + + Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 ++ K + + Q +L + Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333 >gi|217964373|ref|YP_002350051.1| DNA polymerase III, delta subunit [Listeria monocytogenes HCC23] gi|217333643|gb|ACK39437.1| DNA polymerase III, delta subunit [Listeria monocytogenes HCC23] gi|307571062|emb|CAR84241.1| DNA polymerase III, delta subunit [Listeria monocytogenes L99] Length = 343 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ + E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLK-VLEQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|255027487|ref|ZP_05299473.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J2-003] Length = 343 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDEMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|254931416|ref|ZP_05264775.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262] gi|293582966|gb|EFF94998.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262] Length = 343 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILKGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|47095434|ref|ZP_00233044.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254827769|ref|ZP_05232456.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL N3-165] gi|254829760|ref|ZP_05234415.1| DNA polymerase III subunit delta [Listeria monocytogenes 10403S] gi|254898353|ref|ZP_05258277.1| DNA polymerase III subunit delta [Listeria monocytogenes J0161] gi|254912155|ref|ZP_05262167.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936483|ref|ZP_05268180.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900] gi|47016255|gb|EAL07178.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258600149|gb|EEW13474.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL N3-165] gi|258609076|gb|EEW21684.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900] gi|293590127|gb|EFF98461.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 343 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|254824460|ref|ZP_05229461.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J1-194] gi|255520861|ref|ZP_05388098.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J1-175] gi|293593697|gb|EFG01458.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL J1-194] Length = 343 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEVYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|296133955|ref|YP_003641202.1| DNA polymerase III, delta subunit [Thermincola sp. JR] gi|296032533|gb|ADG83301.1| DNA polymerase III, delta subunit [Thermincola potens JR] Length = 346 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 134/331 (40%), Gaps = 25/331 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINSTSLF 80 V++F+G + L+ E++ +FK + F++ V+ + ++I + Sbjct: 17 PVYLFWGEETFLLEEVLAKFKYQLIPPDVMDFNMDVVEGKNVSPEDIVRL---ATTLPFM 73 Query: 81 SKKKIILIENLSTEKKVLDC-------------LEEIIIKNICNHIIIIKSNEIKKNNTL 127 S K++++IEN K L E + + +I S+ + + L Sbjct: 74 SDKRVVIIENADLFKAQKKTGEKSDQAKSQEELLIEYCKQPLDTTCLIFTSDSVDRKKKL 133 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K ++ + + D I L D +E + K+I EA L+A +G + E Sbjct: 134 FKAVQETGMAVEFTPLKD--IELNDWVENRINGMGKNIETEAIDELVAAVGSNLRMLDAE 191 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL +Y + +I + V ++ T L I E+++A + AI L + P Sbjct: 192 LRKLFNYTGDRKVINREDVLQLVSKTTNLSIFELVDAVGERNSQKAIQLMREMIIYGEPP 251 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL + F+ L + + + +++ + + + ++ + + +++ + Sbjct: 252 VRLLFMVAKHFRTLLQAKTLYLT-GYAEKQVATQLQIHPYVARKCV--RQSKNFSREELE 308 Query: 308 ETLHKIDHR---IHLARKKKYLEKNIIFQTI 335 + L KI I + ++ L ++F + Sbjct: 309 QALEKILETDISIKTSYREPVLALELLFVNL 339 >gi|56552329|ref|YP_163168.1| DNA polymerase III subunit delta [Zymomonas mobilis subsp. mobilis ZM4] gi|56543903|gb|AAV90057.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 337 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 120/323 (37%), Gaps = 13/323 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + V + YG D + +Q + + ++ ++ + + +E + SLF Sbjct: 20 NAVILLYGPDVAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 S + + +E E +L L+ +I N+ +II + +K+ + L K+A +LA Sbjct: 74 SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 + Y + L+ I + Q L +R +E++K + Y D Sbjct: 132 ASYLPEGENANRLVMALGEEKGLRIRPDVAQKLAIYAENNRALLVSEIEKYALYLNSDKN 191 Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 +T + + I D + + + + L+ L+ Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNTALLEQELASLSDVGIEPILLIRVLLR 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + LL + +S +K+I+ + I ++ + ++L +W + + + + + Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 ++ K + + Q +L + Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333 >gi|167746551|ref|ZP_02418678.1| hypothetical protein ANACAC_01261 [Anaerostipes caccae DSM 14662] gi|167653511|gb|EDR97640.1| hypothetical protein ANACAC_01261 [Anaerostipes caccae DSM 14662] Length = 326 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 121/319 (37%), Gaps = 17/319 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77 +++FYG +K L+ + ++ K+ + + F + EI I + Sbjct: 16 NLYLFYGKEKYLVAQTRDKLKEALIPSGDTMNYSYFEGKKTDIPEI-------LELIQTM 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+ ++++++ KK D + + I++I +++ K + + K K Sbjct: 69 PFFNDYRLLVLDQTELGKKSNDDFLNALKEMPETTILLIIEDDVDKRSKIYKYINKEGCA 128 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++ + L+ + + L QK ++++ Q+ L G D +NEL+KL SY Sbjct: 129 VSFE--TPKEKDLVLWVAQMLKKEQKKMTQKDIQLFLYKTGQDMFTIKNELEKLISYTKG 186 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +I + ++ + I ++ A + + + L + K +L +++ Sbjct: 187 REVIGAEDLEALTTAQTTNQIFVMLEAIAKKQRDTVLKLYYDLIELKESPFGILALLVRQ 246 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L + + + E + + L++ +R++ + + + K Sbjct: 247 CNQLLQTQSLLKAGKSQGEMAKELKVPP-FVAGK--LKQQVRLFKREEL-YEMIKKCAAT 302 Query: 318 HLARKKKYLEKNIIFQTIL 336 K + I + +L Sbjct: 303 DEGIKTGKITDRIGVELLL 321 >gi|330505007|ref|YP_004381876.1| DNA polymerase III subunit delta [Pseudomonas mendocina NK-01] gi|328919293|gb|AEB60124.1| DNA polymerase III subunit delta [Pseudomonas mendocina NK-01] Length = 342 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 114/298 (38%), Gaps = 10/298 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + L E + + F + E + S SLF+ Sbjct: 18 PVYAISGDEPLLCQETADAIRNACRQQG---FGERQVFNAEANFDWGNLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +K+++ + + K L E + + + ++++ ++ + K A+ A Sbjct: 75 EKRLLELRLPSGKPGDKGAAALLEYLARPPEDTVLLLSLPKLDGSTQKSKWAKALIDGQA 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L + S +A +++ A + G+ +A+ E++KL Sbjct: 135 SQFIQIWPVDANQLPQWIRQRLAQAGLNASADAVEMIAARVEGNLLAAAQEVEKLKLLAD 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + V+ + D+ + +I+ + G +A+ + + + + +L + Sbjct: 195 GNQ-VDAETVQAAVADSARFDVFGLIDCALGGDAAHALRMLEGLRGEGVETPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +LL I + I +K + +R ++ ++L+ + + L + Sbjct: 254 EIRLLAGIAHQ-QSQGIPLDKAFSSARPPVWDKRRPLVSKALQRHSSKRWGQLLQQAQ 310 >gi|254486189|ref|ZP_05099394.1| DNA polymerase III, delta [Roseobacter sp. GAI101] gi|214043058|gb|EEB83696.1| DNA polymerase III, delta [Roseobacter sp. GAI101] Length = 332 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 45/322 (13%), Positives = 110/322 (34%), Gaps = 23/322 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG D + +F K + + L + A +++++ + I + F Sbjct: 22 LLIYGGDPMRVAMRRQEFLKALLGANAEEEMRLTRIQAADLRRDPPMLLDAIKAVGFFPG 81 Query: 83 KKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + +E+ + L + + + II+ + ++KK + + K E + A Sbjct: 82 PRAAFVEDA--NDNIAKILMDALAGWQPGDAQIIVTAGDLKKTSKVLKAFEAHKTAFATP 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKLSSY-CLEDI 199 Y DN + IE L + S +A L D R ++K++ Y + Sbjct: 140 IY-DNPPDRAE-IERILAEARLSPEPDAMGALTELARVLDPGDFRQMVEKITLYKIGDAG 197 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T + V + + +++I++ + + + + A + + L+ + F+ Sbjct: 198 PLTAEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTLIIMATRHFR 257 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L +I + I R+ + W + L + Sbjct: 258 TLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETALTVLTDTDLT 304 Query: 320 ARK--KKYLEKNIIFQTILYIA 339 R + ++ + + +A Sbjct: 305 LRSAGQHAPTMALVERAFIRLA 326 >gi|160880101|ref|YP_001559069.1| DNA polymerase III, delta subunit [Clostridium phytofermentans ISDg] gi|160428767|gb|ABX42330.1| DNA polymerase III, delta subunit [Clostridium phytofermentans ISDg] Length = 325 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 116/311 (37%), Gaps = 12/311 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG++ L N+ K I D + + +I N + + + FS + Sbjct: 17 YLLYGNEAYLKRFYKNKLKAGILGD-SDEMNFTYVEGKDI--NCNEMIHIAQTMPFFSDR 73 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 +++LIEN K + I ++ NE+ K N L K + + + Sbjct: 74 RLLLIENSGWFKN-QSEFADYIRDMPETTYVVFVENEVDKRNRLYKAVKDLGYISEL--N 130 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 ++ L + L K I+ L +G + ++E+ KL SYC E +ITE Sbjct: 131 GLDEKSLKMWVVSLLQRENKKITDATLTYFLNKVGTNLDNIQSEIDKLVSYCYEREVITE 190 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 + +K + + + ++++A A+ + L + +L+ + L+ + Sbjct: 191 EDIKAVCSEQITGKMFQMLDAIASKNQKLALEMYYDLLTLREKPMTILYLLNRHINLIMQ 250 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIHLA 320 + + E + K R + + ++++L +I+ ++ Sbjct: 251 CKALLSKRTSNAEIASKIGVPPFAVAKYAA---QARNFTEENLKKSLILGTEIEEQVKTG 307 Query: 321 RKKKYLEKNII 331 R + ++ Sbjct: 308 RLIDQIGVELL 318 >gi|304310514|ref|YP_003810112.1| DNA polymerase III delta subunit [gamma proteobacterium HdN1] gi|301796247|emb|CBL44455.1| DNA polymerase III delta subunit [gamma proteobacterium HdN1] Length = 344 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 125/322 (38%), Gaps = 17/322 (5%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I+ H Q ++I G + L+ E + + + + + + A + Sbjct: 7 QIKPHFERQGPQA-------LYIVSGEEPLLMQEACDAIRASARASGYLEREVY---ASD 56 Query: 63 IQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + NS SLF ++K+I ++ + + L + + + ++++ + Sbjct: 57 AHISWPAIFEAANSLSLFGERKLIELRLDKVKFDDSAKKILSSYLERPNPDTLLLMILPK 116 Query: 121 IKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 ++K + K + + I +P L I+ + S+EA +L + G Sbjct: 117 LEKAFSTTKWFQSIEQKAIVIQVWPLETKDLPRWIDTRIRQAGMQASREAIALLAERVEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E++KL + ++ + D + ++++ +++G A+ + F Sbjct: 177 NLLAAAQEIEKLRL-LNGAGHLDAAAIESTVSDHARYNLFDLVDQSLEGNAETALKMLHF 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 AS LL F+++ + L + + ++ K++Q I ++ ++++L Sbjct: 236 CRASGEEPLILLWAFVKELRALYAM-LEQQQRGTPPAKLLQDFR--IWNKRKPTIEKALN 292 Query: 300 IWNKNLVRETLHKIDHRIHLAR 321 + V L A+ Sbjct: 293 KQSLLRVETALSISSQIDRAAK 314 >gi|284801868|ref|YP_003413733.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5578] gi|284995010|ref|YP_003416778.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5923] gi|284057430|gb|ADB68371.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5578] gi|284060477|gb|ADB71416.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5923] Length = 343 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEMVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVDHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|254516565|ref|ZP_05128624.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR5-3] gi|219674988|gb|EED31355.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR5-3] Length = 344 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 122/297 (41%), Gaps = 9/297 (3%) Query: 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 H V++ G + L+ E +Q + +V ++ + N + +S Sbjct: 13 DRTLHSVYLISGDETLLVQECADQVRAAAKRAGCHERHVV--DSSDRGFNWQDLTQDSSS 70 Query: 77 TSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLF+++++I I N + L E + + I++I + +I K +T K + Sbjct: 71 MSLFAEQRLIELRIPNGKPGAEGSKALLEYLAHAPDSDILLIVAGKIDKASTNSKWYKAI 130 Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + +P N L +E SI ++ +L + G+ +A+ EL+KL Sbjct: 131 DQAGATVQLWPVNADDLPRWLEGRARSINLSIDRDGLSLLAERVEGNLLAAVQELEKLRL 190 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 D IT + V D + ++ + +I+ + G+ +++ + + ALL G Sbjct: 191 LA-GDATITAKQVADAVANSARFDVFTLIDVALAGRAGDSLRMLHGLRSEGTQPPALLWG 249 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ +LL + + + + + + + +++++Q ++R E L Sbjct: 250 LVRELRLLRAV-LQAVAAGRQPMQALNEAR--VWKSRQSVIQAAMRRHTIASCEELL 303 >gi|332311923|gb|EGJ25018.1| DNA polymerase III subunit [Listeria monocytogenes str. Scott A] Length = 343 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILKGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I + + I I A+ + L K +L Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLHDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + + + + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|16800584|ref|NP_470852.1| DNA polymerase III subunit delta [Listeria innocua Clip11262] gi|16413989|emb|CAC96747.1| lin1516 [Listeria innocua Clip11262] Length = 343 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 120/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTTEKSKNKVEHDAAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L +E L +S+EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWLEAKLNENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + +++ + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAASKLK--VHPFRVKLASKQAKNFSELQLNQALKR 309 Query: 313 IDHRIHLAR 321 + + Sbjct: 310 LAEIDLEMK 318 >gi|225388434|ref|ZP_03758158.1| hypothetical protein CLOSTASPAR_02170 [Clostridium asparagiforme DSM 15981] gi|225045515|gb|EEG55761.1| hypothetical protein CLOSTASPAR_02170 [Clostridium asparagiforme DSM 15981] Length = 325 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 114/317 (35%), Gaps = 12/317 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L N+ K+ ++ D + I N+ ++ F++ Sbjct: 16 AYLLFGDEAFLKKSYKNRLKEAVTGG--DTMNYNYYEGKGI--NVPEILGMADTMPFFAE 71 Query: 83 KKIILIENLSTEKKVLDC--LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++IL+E+ K + L E + ++ E+ K + L K +K+ + Sbjct: 72 KRLILVEDSGFFKGGGEAESLAEYLPNVPDTTCLLFVETEVDKRSKLYKAVKKYGYAAEM 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 L L K I+ + L+ G D +EL KL SY L + Sbjct: 132 V--RQEPAQLARWAAGVLAREGKKITGRTMDLFLSKTGDDMENILSELDKLISYTLGRDV 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT+ V+ + I ++I A + A+ L + L K P +L ++F Sbjct: 190 ITDADVEAVCVTQVTNKIFDMITAISSRQTRKAMDLYEDLLTLKEPPMRILFLIARQFNQ 249 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 + ++ + + I K + + +L + + K + ++ A Sbjct: 250 ILQVKELM-GKGMDKSTIASKLKLAPFVAGKIML--QAKSFTKEQIFSYVNLCVDAE-EA 305 Query: 321 RKKKYLEKNIIFQTILY 337 K L + + ++ Sbjct: 306 VKTGKLADRLAVELLIA 322 >gi|241761615|ref|ZP_04759702.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373923|gb|EER63456.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 337 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 120/323 (37%), Gaps = 13/323 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + V + YG D + +Q + + ++ ++ + + +E + SLF Sbjct: 20 NAVILLYGPDIAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 S + + +E E +L L+ +I N+ +II + +K+ + L K+A +LA Sbjct: 74 SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 + Y + L+ I + Q L +R +E++K + Y D Sbjct: 132 ASYLPEGENANRLVIALGEEKGLRIRPDIAQKLAIYAENNRALLVSEIEKYALYLNSDKN 191 Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 +T + + I D + + + + L+ L+ Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNTALLEQELASLSDVGIEPILLIRVLLR 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + LL + +S +K+I+ + I ++ + ++L +W + + + + + Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310 Query: 317 IHLARKKKYLEKNIIFQTILYIA 339 ++ K + + Q +L + Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333 >gi|167766649|ref|ZP_02438702.1| hypothetical protein CLOSS21_01155 [Clostridium sp. SS2/1] gi|167711772|gb|EDS22351.1| hypothetical protein CLOSS21_01155 [Clostridium sp. SS2/1] Length = 346 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 119/317 (37%), Gaps = 19/317 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77 ++FYG +K +I ++ NQ KK + F +A+EI + Sbjct: 35 RFYLFYGEEKYMISQMKNQLKKALVSEDDTMNYSYFEGKRADAIEI-------VELAKTL 87 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 FS + ++++ KK D E + + +++ + + K + + K K Sbjct: 88 PFFSDHRFLILDETGLGKKSDDTFIEGLKEASDTSVVLFIEDSVDKRSKIYKFLSKEGHA 147 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + D L + L K +S + L G D +NEL+KL SY E Sbjct: 148 VCFESAGD--KELSRWLISLLKKEGKQMSSATMRSFLYRCGSDMYTLKNELEKLISYVGE 205 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 IT + ++++ I ++ A + + + L + K +L +++ Sbjct: 206 REEITIRDLEELTSSQTTNQIFVMLEAIARKQREKVLTLYYDLIELKESPFGILALLVRQ 265 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKID 314 L ++ +C S I ++ + + L++ ++++ + +R E K D Sbjct: 266 CNQLLQVK-DLDCLGKSNGMIAKQMKVPAFVAGK--LKDQAKMFSMDTLRDMIEACAKTD 322 Query: 315 HRIHLARKKKYLEKNII 331 I + + ++ Sbjct: 323 ESIKTGKISDRVGVELL 339 >gi|146308803|ref|YP_001189268.1| DNA polymerase III subunit delta [Pseudomonas mendocina ymp] gi|145577004|gb|ABP86536.1| DNA polymerase III, delta subunit [Pseudomonas mendocina ymp] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 120/328 (36%), Gaps = 11/328 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + L E + + FS + E + S SLF+ Sbjct: 18 PVYAISGDEPLLCQEAADAVRNACRQQG---FSERQVFNAEANFDWGNLLQAGASLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +K+++ + + K L E + + + ++++ ++ + K A+ Sbjct: 75 EKRLLELRLPSGKPGDKGTAALLEYLGRPPEDTVLLLSLPKLDGSTQKSKWAKALIDGQV 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L I + L S S +A +++ A + G+ +A+ E++KL Sbjct: 135 SQFIQIWPVDANQLPQWIRQRLAQAGLSASADAVEMIAARVEGNLLAAAQEVEKLKLLAE 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + V+ + D+ + +I+ + G +A+ + + + + +L + Sbjct: 195 GNQ-VDAETVQAAVADSARFDVFGLIDCALAGDAAHALRVLEGLRGEGVETPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + +LL I + I +K + +R ++ ++L+ + + L + Sbjct: 254 EIRLLAGIAHQ-QSQGIPLDKAFASARPPVWDKRRPLVSKALQRHSSKRWGQLLQQAQLI 312 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344 K + +L + + Sbjct: 313 DAQI-KGQAPGDPWSDLALLTLQLAGQR 339 >gi|291550850|emb|CBL27112.1| DNA polymerase III, delta subunit [Ruminococcus torques L2-14] Length = 327 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 125/324 (38%), Gaps = 14/324 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST-FWNEINSTSLFS 81 V++ G + L + N+F K + + + E + + + F+ Sbjct: 16 VYLLCGEEGYLKKQYKNRFVKAMLPEGD----TMNYSYYEGKNTPVKEAIDLAETLPFFA 71 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++++I+ EN K L + I I EI K N L K + + + Sbjct: 72 ERRLIVFENTGFFKTAAGADLADYIKDMPETTCFIFVEEEIDKRNKLYKAVKSKGYIAEL 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 S + L + + QK IS+ L +G D + EL+K+ Y LE Sbjct: 132 S--TQDAGTLKRWVAGLVRKEQKQISESVIVYFLDKVGTDMENIQGELEKVFCYALERDT 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT++ + + +I E+++A G A+ L LA K P +L ++++++ Sbjct: 190 ITKEDIDAVCVTQITNHIFEMVDAVAAGNQQKALDLYYELLALKEPPMRILFLLVRQYRM 249 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + ++I K + +N ++++ + + +R + + Sbjct: 250 LFHVKALA-NQGYGRKEIASKAGLHPFVAGKN-MEQA-KRFKMGQLRRVMEEGAQLEQDV 306 Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344 K L N+ + L+I + + + Sbjct: 307 -KTGLLTDNLAVE--LFIVKQSER 327 >gi|297584662|ref|YP_003700442.1| DNA polymerase III subunit delta [Bacillus selenitireducens MLS10] gi|297143119|gb|ADH99876.1| DNA polymerase III, delta subunit [Bacillus selenitireducens MLS10] Length = 343 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 134/323 (41%), Gaps = 21/323 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG++ L+ +++ + + F+ + EI I E + Sbjct: 17 RVYVLYGTETYLMEDVMQRILRQSLSDDEYDFNYSKFDMNEI--PIELAVEEAFTFPFMG 74 Query: 82 KKKIILIEN---LSTEKKVLD------CLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 K+++LI + L+ +K D L + + ++II ++ ++ + L K Sbjct: 75 GKRVVLIRDPWFLTAQKPKTDVEHNTDALLTYVSQAPEETVMIIMASYEKLDERKKLVK- 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E P ++ L D I + KEA L G D + +E+ K Sbjct: 134 -ELKKQTRVFKAEPMSERELRDWISAKSADAEVQFEKEAADAFLTLTGADLMIMSSEINK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ Y + +IT++ V D++ + I +++AT++ +I A+ + L K + Sbjct: 193 LTLYAADGGVITKEIVYDLVARSLEEDIFALVDATVKQRIDEAMKIYKDLLKQKEAPIKI 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE-- 308 L +++F++L ++ +K+ EK + K I P + + + + K+ + + Sbjct: 253 LALVVRQFRILHQVKELKDQG--YSEKAMAGKLK-IHPYVVKLAAKQVSSFRKHDLLKQI 309 Query: 309 -TLHKIDHRIHLARKKKYLEKNI 330 L ++DH+I R L + Sbjct: 310 DELAELDHQIKTGRISDELGVEL 332 >gi|239626098|ref|ZP_04669129.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520328|gb|EEQ60194.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 325 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 106/263 (40%), Gaps = 9/263 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G + L N+ K I+ ++ + + + I + + FS+ Sbjct: 16 VYLLFGEEAFLKKSYKNRLKDAITDGDTMNYNYYEGKGMNVNEIIG-LSD---TMPFFSE 71 Query: 83 KKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K++IL+E+ K D + + + +I +E+ K + L K +K+ + Sbjct: 72 KRLILMEDSGFFKGGAGADEMTQYMEHIPETTCLIFVESEVDKRSRLYKAVKKYGYAAEL 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 S + L L + I+ ++ L+ G D +EL+KL SY + + Sbjct: 132 S--HQDSSQLARWAAGILSKNGRKITGRTMELFLSKTGDDMENISSELEKLISYTMGRDI 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T++ V+ I I ++I+A + A+ L + L K P +L ++F Sbjct: 190 VTDEDVETICTTQVTNKIFDMISAISARQTRKAMDLYEDLLTLKEPPMRILFLIARQFNQ 249 Query: 261 LEKIHIIKECSNISFEKIIQKTE 283 + ++ + + I K + Sbjct: 250 ILQVKELV-GKGMDKGTIASKLK 271 >gi|260438536|ref|ZP_05792352.1| DNA polymerase III, delta subunit [Butyrivibrio crossotus DSM 2876] gi|292809125|gb|EFF68330.1| DNA polymerase III, delta subunit [Butyrivibrio crossotus DSM 2876] Length = 326 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 11/294 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L N+ K+ I D + +I +I F + + FS+ Sbjct: 16 AYLIYGEEDYLKNFYKNKLKEAICGD--DTMNFSYYGGKDI--DIKDFIDTSQTMPFFSE 71 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAIS 141 +++IL+E KK + E + + + +E+ K N L KI EK Sbjct: 72 RRLILVEGSGLFKKSSTEVAEAVDIAPESTYFVFVEDEVDKRNKLFKIISEKGYVCEMK- 130 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + LM K I+K L+ G D +NE KL Y + I Sbjct: 131 --EQKEAELMTWGVRIFAAADKRITKSNMAYFLSKTGSDMNNIKNEADKLIDYAKDSEEI 188 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T++ + + + +++ A + L L K P +L ++F L Sbjct: 189 TKEDIDAVCIVQIQDKVFDMVEALAMRDRDKVLRLYSDLLELKEPPMKILAIMGKQFATL 248 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + + ++ E + + K + + + + +I Sbjct: 249 YGVKCMMDNNSPQGEIADKLGIRPFFISK---YISQAKGFTSKELECGMKEIAE 299 >gi|85709983|ref|ZP_01041048.1| DNA polymerase III delta subunit [Erythrobacter sp. NAP1] gi|85688693|gb|EAQ28697.1| DNA polymerase III delta subunit [Erythrobacter sp. NAP1] Length = 346 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 112/348 (32%), Gaps = 15/348 (4%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 H + +F F G D+ + + D + L+ +++++ Sbjct: 5 HSEFARGLPRTAQQASIFFFCGPDEAG----ASAAATKVIEALPDAGERIELSGGDLKRD 60 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI----CNHIIIIKSNEIK 122 + +E S SLF K+ IL+ E D L+ +I +++ + Sbjct: 61 PAKLGDEARSGSLFGDKRHILVRATGDEAH--DALKALIETADVGGGDAAPVLVVATSAT 118 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + K+ EK L YP + + + + + + + G D Sbjct: 119 DKSRTAKLLEKRPDALVTMFYPPDLSSVAASVRSMADGAGLRLGGDLAERIARAAGLDVR 178 Query: 183 ASRNELQKLSSY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 +++E+ KL+ Y + + +I T I+NA + G++ + Sbjct: 179 LAQSEVDKLALYLDASSQSPKTASVEDYGEIGASTEEDGFAPIVNAVLGGELGKLAVELK 238 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE-KIIQKTEKNIIPMKRNILQES 297 + LL ++ L +I +K I + +++ Sbjct: 239 RMKELGLNPVGLLLALERRAAQLAQIAARLGPRGSFENLDRGEKARLGIFWKEERDIRQQ 298 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + W + + ++ + ++ Q + IA+ A K Sbjct: 299 VTRWRTAKLERLVPRLIALHQSLLANSQAAELLLAQDLAEIARFAAKG 346 >gi|78223501|ref|YP_385248.1| DNA polymerase III subunit delta [Geobacter metallireducens GS-15] gi|78194756|gb|ABB32523.1| DNA polymerase III, delta subunit [Geobacter metallireducens GS-15] Length = 334 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 119/328 (36%), Gaps = 14/328 (4%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + + ++ F+G + L+ + + + F+L V E Sbjct: 1 MKIDEFNKALDRGEIS--PLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + + + +F+ ++++L++ L+ L + ++ ++ Sbjct: 59 KGDE--VASVAQTLPMFADRRMVLVKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVD 116 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + E + C + L I E K + A ++L+ +G + Sbjct: 117 QRKKF--FQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPAAAEMLVYLVGNNLG 174 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +L+K++ Y + I+ + V+ I+ DT V + ++ NA + + A+ L Sbjct: 175 ELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILR 234 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL + F+ L ++ + + ++ I + I P + R ++ Sbjct: 235 DGEAPLMLLAMIARHFRQLWRVRDLM--AQKVPQQDISRL-AGINPYFIKGVMAQARNFS 291 Query: 303 KNLVRETLHKIDHRIHLAR----KKKYL 326 + +++ + + K+ L Sbjct: 292 ASELKKVFEGLYATDLALKGGGAKRPTL 319 >gi|95930684|ref|ZP_01313418.1| DNA polymerase III, delta subunit [Desulfuromonas acetoxidans DSM 684] gi|95133336|gb|EAT15001.1| DNA polymerase III, delta subunit [Desulfuromonas acetoxidans DSM 684] Length = 331 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 5/269 (1%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG + L+ + + F+L+VL+ + + + + + F++ Sbjct: 18 LLFLYGEEAFLLEQSLKHLLNTAVDPATRDFNLLVLSGKD--ADPTLVMDTARTFPAFAE 75 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++++I+ LD L I + ++ +N I K + +K + I Sbjct: 76 RRVVVIKQAQDLSAGTLDALVPYIQEPAAECCLVFCANRIDKRKKFFQSFKKTGEL--IE 133 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 P + + + K S++ + +G EL KL+SY + +I Sbjct: 134 FKPLFANKIPAFVRDQARQFGKQFSEDGLSLFCKRVGTYLTEIHGELLKLASYLGDKPVI 193 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V ++CDT V I ++ + K+ A+ L++ +L + F+ L Sbjct: 194 DVDDVAAVVCDTRVDSIFDLTDVVGARKLPQALTLSERLQLEGEAPLKILAMLTRHFRQL 253 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMK 290 K + E + + Sbjct: 254 WKTRSLLEQGASQQDVAKAVRINPYFVER 282 >gi|94501465|ref|ZP_01307984.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65] gi|94426430|gb|EAT11419.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65] Length = 342 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 114/302 (37%), Gaps = 15/302 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + L E+ Q + + F+ ++ E N S ++ N+ SLF+ Sbjct: 18 PFYVVSGDEPLLSQEIGEQLRS---VARQQGFTEREVHHAEHNYNWSELYDSANAMSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++KII I+N + + + +++ II + K K + A Sbjct: 75 ERKIIEVRIDNGKPGDAGAKTMLGLCEQPNPDNLFIIFLPRLDKKQQNSKWFKALDKAGA 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ +P + L I + +EA +L G+ +A+ E++KL+ + Sbjct: 135 FIAHWPIERQQLPGWIANRMRQHGMKADREALALLADRTDGNLLAAAQEVEKLTL--VGK 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT + ++ + + + + A ++G + + + L F Sbjct: 193 NEITIEDIEASVGEASRFDVFALSEAALKGDKKRCLHVLQVLQGEGLNVLQPLAIFANDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR----NILQESLRIWNKNLVRETLHKID 314 + L + + + S +S +K +Q+ + + K+ LR + + ++ID Sbjct: 253 RQLLSMQQLIQ-SGLSDDKALQQLK--VFWPKKQQQLKAATRRLRTQDIEECLQLCNQID 309 Query: 315 HR 316 Sbjct: 310 MA 311 >gi|160940348|ref|ZP_02087693.1| hypothetical protein CLOBOL_05238 [Clostridium bolteae ATCC BAA-613] gi|158436928|gb|EDP14695.1| hypothetical protein CLOBOL_05238 [Clostridium bolteae ATCC BAA-613] Length = 353 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 106/273 (38%), Gaps = 15/273 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWN 72 V++ +G + L ++ ++ ++ ++ F +N EI Sbjct: 36 KDRTFKPVYLLFGEEAFLKKSYKSRLREALTDGDTMNYNYFEGKGMNVNEIIG------- 88 Query: 73 EINSTSLFSKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 ++ F++K++IL+E+ K D L E + + ++ +E+ K + L K Sbjct: 89 LADTMPFFAEKRLILMEDSGFFKGGAGADELTEYMGGIPESTCLVFVESEVDKRSRLYKA 148 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K+ +S L L + I+ + L+ G D +EL+K Sbjct: 149 VKKYGYAAELS--HQEPAQLARWAAGILSKNGRKITGRTMEFFLSKAGDDMENISSELEK 206 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L SY L +IT++ V+ I I ++I A + A+ L + L K P + Sbjct: 207 LISYTLGREVITDEDVETICTTQVTNKIFDMITAIAARQTRKAMDLYEDLLTLKEPPMRI 266 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L ++F + ++ + + I + + Sbjct: 267 LFLIARQFNQILQVKDLM-GKGMDKSTIASRLK 298 >gi|315303226|ref|ZP_07873876.1| DNA polymerase III, delta subunit [Listeria ivanovii FSL F6-596] gi|313628408|gb|EFR96891.1| DNA polymerase III, delta subunit [Listeria ivanovii FSL F6-596] Length = 343 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 120/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L++EK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+ A L G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLQENDIHMSQSAINRLTELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC E IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFETKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIAGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + +++N + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSENKLNQALKR 309 Query: 313 IDHRIHLAR 321 + + + Sbjct: 310 LAEIDYEMK 318 >gi|83855267|ref|ZP_00948797.1| hypothetical protein NAS141_11066 [Sulfitobacter sp. NAS-14.1] gi|83843110|gb|EAP82277.1| hypothetical protein NAS141_11066 [Sulfitobacter sp. NAS-14.1] Length = 332 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 43/331 (12%), Positives = 109/331 (32%), Gaps = 23/331 (6%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + + YG D + + K + + L + A +++++ + Sbjct: 13 AKPDPTKTGLLIYGGDAMRVALKRQTFLKNLLGPNAEEEMRLTRIQAADLRRDAPMLLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 I + F + +E+ + L + + + I++ + ++KK + + K E Sbjct: 73 IKAVGFFPGPRAAFVEDA--NDNIAKILTDALADWQPGDAQIVVSAGDLKKTSKVLKAFE 130 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKL 191 + A Y DN + IE L + S +A L D R + K+ Sbjct: 131 AHKNAFATPIY-DNPPDRAE-IERVLAEAKLSPEADAMGALSELARVLDPGDFRQMVDKI 188 Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + Y + +T + V + + +++I++ + + + + A + + L Sbjct: 189 TLYKIGDAGPLTAEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTL 248 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + F+ L +I + I R+ + W + L Sbjct: 249 IIMATRHFRTLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETAL 295 Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIA 339 + R + ++ + + +A Sbjct: 296 TVLTDTDLTLRSAGQHAPTMALVERAFIRLA 326 >gi|332981263|ref|YP_004462704.1| DNA polymerase III subunit delta [Mahella australiensis 50-1 BON] gi|332698941|gb|AEE95882.1| DNA polymerase III, delta subunit [Mahella australiensis 50-1 BON] Length = 338 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 129/327 (39%), Gaps = 14/327 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++FYG ++ + + + Q K + ++ VL+ + ++ LF Sbjct: 17 RLYLFYGQEEYVKEQALAQLKDTLLDGAVRDMNMTVLDGETASVD--DVLACADTLPLFG 74 Query: 82 KKKIILIEN------LSTEKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKF 134 +++++I N + L + I + ++ + +I+KN L K K+ Sbjct: 75 GRRLVVIRNYAPLMGRGADTVDRKRLVDYIAHIPEHLCLVFVCRGDIRKNTALFKAIGKY 134 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 +V+ + D L+ I + K+IS + Q + G + +E+ K++ Y Sbjct: 135 GAVVDFAQLKD--KELILWIRTAFKRLGKAISSQDAQYMAMMAGSELETLVHEIHKVADY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 E +I Q + ++ I ++++A Q + A+ + L S +L Sbjct: 193 AGEARVICAQDIDAVVTRISSANIFKMVDAIGQKDVDKALYHMNELLESGQSPIGMLSMI 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++F++L + ++ + S +I + + I N L+ ++K + E L Sbjct: 253 ARQFRILLQCRLLLD-KGYSAREISSQLKLPIF--AVNSYINQLKEFDKRQIVEALRHCL 309 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQT 341 + + + I+ + +L + Sbjct: 310 QSDLDMKSTSFNQAMILERLVLSLKNN 336 >gi|149185094|ref|ZP_01863411.1| DNA polymerase III delta subunit [Erythrobacter sp. SD-21] gi|148831205|gb|EDL49639.1| DNA polymerase III delta subunit [Erythrobacter sp. SD-21] Length = 347 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 93/304 (30%), Gaps = 10/304 (3%) Query: 52 PFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN 111 P V + E++ + + +E STSLF K+ I E + L+ ++ Sbjct: 46 PGERVEIPGAELRADPAKLGDEARSTSLFGDKRHIWSRVAGDEAH--EALKTLLETGDMG 103 Query: 112 H----IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 +I+ + + K+ EK + YP + + + + Sbjct: 104 AGEAWPVIVVATSATDKSRTAKLLEKRKDAVVAMFYPPDLRSVTQSVRGMGDAAGLKLDS 163 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIIN 223 + + D +++E+ KL++Y +H+ I + ++N Sbjct: 164 AVAERIARAANLDVRLAQSEVTKLATYLDATPQSPRPAAMEHLDAIGAASEEDGFASLVN 223 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 A + G+ + L ++ L +I +K Sbjct: 224 AVLAGQGPKVATEIARMKQIGLNPVGTLLAIERRAAQLARISAALGNRRYQDLDKGEKAR 283 Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 I + + E ++ W + ++ + ++ Q + IA+ A Sbjct: 284 LGIFWKEERDIAEQVQRWRGPKLDRLTLRLTELHRELLTNSQSSELLLAQGLTGIARVAG 343 Query: 344 KNNN 347 Sbjct: 344 AGRR 347 >gi|148265160|ref|YP_001231866.1| DNA polymerase III, delta subunit [Geobacter uraniireducens Rf4] gi|146398660|gb|ABQ27293.1| DNA polymerase III, delta subunit [Geobacter uraniireducens Rf4] Length = 331 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 121/311 (38%), Gaps = 10/311 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F + K ++ YG + LI + + + + F+L V E Sbjct: 1 MKPEEFARALEKGDI--GPLYYMYGDEPYLIERGVKRLLEQVVSPDFRDFNLNVFYGNEC 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + ++ + +FS+++ IL++ L+ L + + +I + +I Sbjct: 59 KG--EEIFSAAQTLPMFSERRAILVKKSHELSAATLEVLTGYVQNPSPSTCLIFQGEKID 116 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + E + + + L I E + K I A +L +G + Sbjct: 117 QRKKF--FTEMKKTGELVEFKRPYENQLGPFIREEVKAYGKRIEPAAADLLAYMVGNNLQ 174 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 ++++K+++Y + IT VK+I+ DT V + E+ +A + + A+ L Sbjct: 175 ELASQIEKVATYSGKRESITVGDVKEIVSDTKVDTVFELADAFGEKNLSKALRTLYTILR 234 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L + F+ L ++ + + I +I + N + + +++++ R + Sbjct: 235 DGEAPLLVLAMLSRHFRQLWRVRELLDRK-IPTNEIGKAAGINPYFL-KKVIEQA-RNYR 291 Query: 303 KNLVRETLHKI 313 ++ ++ Sbjct: 292 TTELKGVFERL 302 >gi|166032761|ref|ZP_02235590.1| hypothetical protein DORFOR_02476 [Dorea formicigenerans ATCC 27755] gi|166027118|gb|EDR45875.1| hypothetical protein DORFOR_02476 [Dorea formicigenerans ATCC 27755] Length = 328 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 114/311 (36%), Gaps = 11/311 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L + ++ K + D + I N+ + + F++ Sbjct: 16 AYLLYGEEAYLKKQYRDRLTKAVLPE-GDTVNYAHYEGKGI--NVPEIIDLAETMPFFAE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 K++I+IE+ K + I + +E+ K + + K + V+ + Sbjct: 73 KRLIVIEDSGLFKNADAKFADYIKSMPETVCFVFVESEVDKRSKMYKAVKDTGRVVELG- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L+ + ++ + I + + +L+ G D E++KL SY L IT Sbjct: 132 -RQDEKTLLLWLAGNIKREGRQIKQSTAEYMLSRTGTDMENLEREMEKLFSYTLGRNEIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + I I ++I A + A+ LA K P +L+ ++F+LL Sbjct: 191 VADIDAICTTQITNKIFDMIEAVATRQQRKALDYYYDLLALKEPPMRILYLLARQFRLLL 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 + +K+ N +K + + P + R + ++ + + + Sbjct: 251 Q---VKDLMNQGADKSTIAKKAGLHPFVAGKYMQQSRSFTMRELKGIMEEAADTEEAVKT 307 Query: 320 ARKKKYLEKNI 330 R + + Sbjct: 308 GRLSDTMSVEL 318 >gi|330895575|gb|EGH27883.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. japonica str. M301072PT] Length = 320 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 117/297 (39%), Gaps = 13/297 (4%) Query: 30 DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89 D L E + + D + +A + T S SLF++++++ + Sbjct: 1 DPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFAERRLLELR 57 Query: 90 --NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYP 144 + K L E + + +++I ++ + K + + +P Sbjct: 58 LPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWP 117 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 + L I + L + +++A +++ A + G+ +A+ E++KL E+ IT + Sbjct: 118 VDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVE 176 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 V+ + D+ + + +A + G+ +A+ + + + + +L ++ + L + Sbjct: 177 TVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANM 236 Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318 + +K+ I ++ ++ ++L+ + + L +ID +I Sbjct: 237 SQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 292 >gi|329897213|ref|ZP_08271953.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC3088] gi|328921368|gb|EGG28762.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC3088] Length = 338 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 119/301 (39%), Gaps = 13/301 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I E + ++ + + ++ + F + N+ SLF+ Sbjct: 18 PVYLVSGEEPLQIQECCDAIRQAARKQGCEERIVHHADSGSFNWD--DFSADSNALSLFA 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKN---NTLRKIAEKFT 135 +++I + K L E + I++I ++++ K+ + K + Sbjct: 76 SQRLIEVRLGKQKAGKDGSAALVEYCERCEPGTDILLITTDKLDKSTLNSKWVKQIDSVG 135 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 VL I +P L I++ L SI +A ++L + G+ +A+ +++KL Y Sbjct: 136 GVLRI--WPVEPAQLPSWIDQRLRQAGLSIESDALKLLSERVEGNLLAAAQDIEKLKLYA 193 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + I V++ + D+ + ++ ++ + G + I + + A+ F Sbjct: 194 GNNSAIDLTTVQEAVADSARFNVYDLADSLLSGDAEHCIRMLRGVRDEGTDAAAVHWVFR 253 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++ LL + N + + +Q + +++++ +++ + + ++ Sbjct: 254 KEILLLVDLKTAMNEGN-NPAQAMQ--RFGVWKNRQHLVGSAVKRLSAKRLERATSQLAD 310 Query: 316 R 316 Sbjct: 311 A 311 >gi|83941789|ref|ZP_00954251.1| hypothetical protein EE36_06133 [Sulfitobacter sp. EE-36] gi|83847609|gb|EAP85484.1| hypothetical protein EE36_06133 [Sulfitobacter sp. EE-36] Length = 332 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/331 (12%), Positives = 110/331 (33%), Gaps = 23/331 (6%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + + YG D + + + K + + L + A +++++ + Sbjct: 13 AKPDPTKTGLLIYGGDAMRVALKRQSFLKNLLGPNAEEEMRLTRIQAADLRRDAPMLLDA 72 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132 I + F + +E+ + L + + + I++ + ++KK + + K E Sbjct: 73 IKAVGFFPGPRAAFVEDA--NDNIAKILTDALADWQPGDAQIVVSAGDLKKTSKVLKAFE 130 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKL 191 + A Y DN + IE L + S +A L D R + K+ Sbjct: 131 AHKNAFATPIY-DNPPDRAE-IERVLAEAKLSPEADAMGALSELARVLDPGDFRQMVDKI 188 Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + Y + +T + V + + +++I++ + + + + A + + L Sbjct: 189 TLYKIGDAGPLTSEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTL 248 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + F+ L +I + I R+ + W + L Sbjct: 249 IIMATRHFRTLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETAL 295 Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIA 339 + R + ++ + + +A Sbjct: 296 TVLTDTDLTLRSAGQHAPTMALVERAFIRLA 326 >gi|289625787|ref|ZP_06458741.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 305 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 112/274 (40%), Gaps = 10/274 (3%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNIC 110 F + + + + T S SLF++++++ + + K L E + Sbjct: 6 FDERQVFSADASFDWGTLLQAGASMSLFAERRLLELRLPSGKPGDKGAAALMEYCARPAE 65 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYPDNKIHLMDLIEESLLIGQKSISK 167 + +++I ++ + K + + +P + L I + L + ++ Sbjct: 66 DTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWPVDVGQLPQWIRQRLSQAGLAATQ 125 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 +A +++ A + G+ +A+ E++KL E+ IT + V+ + D+ + + +A + Sbjct: 126 DAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVADSARFDVFGLTDAVLN 184 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 G+ +A+ + + + + +L ++ + L + + +K+ I Sbjct: 185 GEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQGVPLDKVFSSARPPIW 243 Query: 288 PMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318 ++ ++ ++L+ + + L +ID +I Sbjct: 244 DKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 277 >gi|153814296|ref|ZP_01966964.1| hypothetical protein RUMTOR_00505 [Ruminococcus torques ATCC 27756] gi|145848692|gb|EDK25610.1| hypothetical protein RUMTOR_00505 [Ruminococcus torques ATCC 27756] Length = 327 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 5/249 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + + + + D + V I +I + + F+ Sbjct: 16 IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I+ E+ K L + I + E+ K N L K + ++ ++ Sbjct: 73 RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L + + +K + L +G D EL+KL Y + IT Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGKDRIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + I +I E++NA A+ L LA K P +L ++++LL Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLLF 250 Query: 263 KIHIIKECS 271 + + Sbjct: 251 HVKGLMANG 259 >gi|315282384|ref|ZP_07870806.1| DNA polymerase III, delta subunit [Listeria marthii FSL S4-120] gi|313613966|gb|EFR87688.1| DNA polymerase III, delta subunit [Listeria marthii FSL S4-120] Length = 343 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 118/303 (38%), Gaps = 14/303 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEAVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE + +S+ A L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKISENHMQMSQTAITRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + +++ + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSERQLNQALKR 309 Query: 313 IDH 315 + Sbjct: 310 LAE 312 >gi|289434761|ref|YP_003464633.1| hypothetical protein lse_1396 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171005|emb|CBH27547.1| holA [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 343 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 121/309 (39%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L++EK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L+ +S+ A L+ G + NELQKL Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLIENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYSFETKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S +++ K + + P + + + + +++ + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309 Query: 313 IDHRIHLAR 321 + + + Sbjct: 310 LAEIDYEMK 318 >gi|317500014|ref|ZP_07958249.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|316898499|gb|EFV20535.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 327 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 5/239 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + + + + D + V I +I + + F+ Sbjct: 16 IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I+ E+ K L + I + E+ K N L K + ++ ++ Sbjct: 73 RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L + + +K + L +G D EL+KL Y + IT Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGRDRIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + I +I E++NA A+ L LA K P +L ++++LL Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLL 249 >gi|331087756|ref|ZP_08336682.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|330409737|gb|EGG89173.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 327 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 5/249 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L + + + + D + V I +I + + F+ Sbjct: 16 IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I+ E+ K L + I + E+ K N L K + ++ ++ Sbjct: 73 RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L + + +K + L +G D EL+KL Y + IT Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGRDRIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + I +I E++NA A+ L LA K P +L ++++LL Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLLF 250 Query: 263 KIHIIKECS 271 + + Sbjct: 251 HVKGLMANG 259 >gi|254448579|ref|ZP_05062038.1| DNA polymerase III, delta subunit [gamma proteobacterium HTCC5015] gi|198261768|gb|EDY86054.1| DNA polymerase III, delta subunit [gamma proteobacterium HTCC5015] Length = 354 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 118/298 (39%), Gaps = 16/298 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I + Q + L V++ G + E ++ + H + ++ Sbjct: 13 MAKIGAQNIQQHLARGLQ---PVYLVAGDEPLQSMETVDAIRAAARQAGHSLREVFEVDR 69 Query: 61 LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + S NS SLF++++I + + + + K+ + E + + I++I+S Sbjct: 70 QF---DWSRLLESGNSMSLFAEQRILEVRLPSGAPGKEGGKAIVEYCQRPADDAILLIQS 126 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 +I K + + + + +P ++ I E + ++A +++ + Sbjct: 127 GKIDKRSKNSAWFKALMQFVVVEVWPIKPAEIVRWIGERMASRGLQADRDAVRLVAQRVE 186 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN--AIML 236 G+ +A+ E++KL L +T + V++ + ++ ++I++ + G+ + + Sbjct: 187 GNMLAAAQEIEKLLL-LLGPGAVTAEQVREAVANSARYNPFDLIDSALMGEKAAPRCVRM 245 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 + +L + + + L + + E ++ K + ++N++ Sbjct: 246 LQGLKGEGVQPPQVLAPLVNELRNLHAMALQVEAGR-PPAAVMGK----VWNQRKNLV 298 >gi|196248980|ref|ZP_03147680.1| DNA polymerase III, delta subunit [Geobacillus sp. G11MC16] gi|196211856|gb|EDY06615.1| DNA polymerase III, delta subunit [Geobacillus sp. G11MC16] Length = 347 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 125/325 (38%), Gaps = 18/325 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YGS+ L+ E + K ++L V + E + E + F Sbjct: 24 PLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAA--LEEAETVPFFG 81 Query: 82 KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 ++++ILI++ +K++ L LE I++ + ++ + + K+A Sbjct: 82 ERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLA 141 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ + V+ + + + L + + IS EA LL G A NE+ KL Sbjct: 142 KEHSEVVVAASLAEGE--LRAWVRRRIESQGAQISDEAIDALLRRAGTQLAALANEINKL 199 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + + + V+ ++ T + ++ + I A+ L + +L Sbjct: 200 ALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDLLENNEEPIKIL 259 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 F+LL ++ + + + I K + L ++ R ++ + + + Sbjct: 260 ALLAGHFRLLAQVKWLAQAGYGQTQ--IASALKVHPFRVKLALGQAARF-SEQELAKAID 316 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 ++ + K +++ + + +L Sbjct: 317 ELAAADYEV-KSGAMDRRLAVELLL 340 >gi|119504402|ref|ZP_01626482.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2080] gi|119459910|gb|EAW41005.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2080] Length = 348 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/329 (13%), Positives = 115/329 (34%), Gaps = 14/329 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + ++ E + + ++ ++ + + SLF+ Sbjct: 18 RCYLVFGDETLIVEECADTVRAAARAAGCTEREIIEISG---AGDWQQLLQSAGALSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +K+I I + + L+E + + + +++I + ++ K + K + L Sbjct: 75 DRKLIEIRLPSGKPGTEGSKALQEYLTLDTEDVLLVI-AGKVDKQSQRAKWFTRIDQEGL 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 AI +P + L +++ L ++A Q+L + G+ +A+ E+ KL + Sbjct: 134 AIQIWPVGRHDLPGFLQQRLKSAGLRADRDAVQLLAERVEGNLLAAVQEVDKLRL-LVTS 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V + + + + G AI A A+L + Sbjct: 193 EHVTVDTVLSSVLANARYSTFGLADTALSGDAVAAIRTLRGLQAESTQPPAVLWPLNRDI 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--LHKIDHR 316 LL +H + + + + + + ++Q + N + L + Sbjct: 253 TLLASLH-DDCAKGQPLSRAMNQ--RGVWRSRMPLVQGAAERQNAKGIARLQKLAFLADA 309 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACKN 345 +K I+ Q ++ +AQ Sbjct: 310 TVKGFEKGNPWD-ILDQVVVLLAQGPKSG 337 >gi|83589440|ref|YP_429449.1| DNA polymerase III, delta subunit [Moorella thermoacetica ATCC 39073] gi|83572354|gb|ABC18906.1| DNA polymerase III, delta subunit [Moorella thermoacetica ATCC 39073] Length = 330 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 119/321 (37%), Gaps = 15/321 (4%) Query: 22 FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++FYGS+ G + E +K + F L+ E+ + Sbjct: 17 PVYLFYGSE-GYLKERALKILEKKLIPPETGDFDYQELDGRELTGAEVIML--AATLPAM 73 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++++I++ + E + + + K ++++ + I K L+ + E ++ Sbjct: 74 AERRLVVIKDPAGEIWQDEDFLKYLTKPEPATCLVLVVNGSIDKR--LKAVKEINSTGRV 131 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + C P L + + ++ IL GGD +RNEL K +Y + Sbjct: 132 VECSPLQGEDLAAWLIKEARQEGYNLPPATALILARAGGGDLRQARNELDKAMAYTGKPG 191 Query: 200 LITEQHVKDIICD-THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+ +I + I ++++A K AI L ++ ++ Sbjct: 192 TITPATVQALIPEIEAENTIFQLVDALGNRKPELAIGFLRQLLERGEAPLGIVAMLARQL 251 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 +L+ + H+ + N+ + P + R ++ + + L ++ Sbjct: 252 RLIYRAHLGGDKRNL-------AARLGVKPFVARKVAAQARNFSLPVAGQALEELLKVDT 304 Query: 319 LARKKKYLEKNIIFQTILYIA 339 + + ++ Q I I Sbjct: 305 ALKTGQGEAGPLLEQAIWTII 325 >gi|138896086|ref|YP_001126539.1| DNA polymerase III subunit delta [Geobacillus thermodenitrificans NG80-2] gi|134267599|gb|ABO67794.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 339 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 125/325 (38%), Gaps = 18/325 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YGS+ L+ E + K ++L V + E + E + F Sbjct: 16 PLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAA--LEEAETVPFFG 73 Query: 82 KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 ++++ILI++ +K++ L LE I++ + ++ + + K+A Sbjct: 74 ERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLA 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ + V+ + + + L + + IS EA LL G A NE+ KL Sbjct: 134 KEHSEVVVAASLAEGE--LRAWVRRRIESQGAQISDEAIDALLRRAGTQLAALANEINKL 191 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + + + V+ ++ T + ++ + I A+ L + +L Sbjct: 192 ALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDLLENNEEPIKIL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 F+LL ++ + + + I K + L ++ R ++ + + + Sbjct: 252 ALLAGHFRLLAQVKWLAQAGYGQTQ--IASALKVHPFRVKLALGQAARF-SEQELAKAID 308 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 ++ + K +++ + + +L Sbjct: 309 ELAAADYEV-KSGAMDRRLAVELLL 332 >gi|119477449|ref|ZP_01617640.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] gi|119449375|gb|EAW30614.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2143] Length = 335 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 128/304 (42%), Gaps = 16/304 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + L+ E + ++ FS VL+ ++ + S N+ SLFS Sbjct: 18 PLYIVSGDEGLLVQECCDAIRRCCRKQG---FSREVLH-VDASFDWSDLLASANAMSLFS 73 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +KK+I + L + +++++I N+++ ++T K + + Sbjct: 74 EKKLIELRMPTGKPGDAGGKALTQYSGNISPDNVLLIICNKLEASSTRTKWYKAVEAAGA 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++ C+P + L I + L + EA Q+L + G+ +A+ E++KL + E+ Sbjct: 134 SVPCWPIDAKQLPRWISQRLNMVGLKADSEALQMLADRVEGNLLAAAQEIEKLRLFS-EN 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +I + + D + +I+ I G + ++ + A ALL ++ Sbjct: 193 NIIDADTIAAAVADNARYDVFGLIDRAIAGDVRGSLKILQGLKAEGTEPLALLWAITREL 252 Query: 259 QLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKID 314 + L I + + I ++++Q + ++ + + +L+ N +R+ ++ D Sbjct: 253 RTLCHCAEQIAQGNGI--DRVLQGQR--VWDKRKAMTKSALQRLNTQQLRQLIIAANRTD 308 Query: 315 HRIH 318 + Sbjct: 309 QSVK 312 >gi|89101075|ref|ZP_01173914.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911] gi|89084218|gb|EAR63380.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911] Length = 346 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 114/326 (34%), Gaps = 14/326 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ LI E N+ F+L + E I + + Sbjct: 16 PIYLLYGTEGFLINETKQLLINNVLAEDESDFNLSTYDLEET--PIEAALEDAETFPFMG 73 Query: 82 KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++I + N + L LE + + II+ + K ++ + E Sbjct: 74 DKRLIFLHNPSFLTSEKTKGKTEHNLAKLESYLKEPSPYSIIVFAAPYEKLDDRKKITKE 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + L I E I ++A Q++L G + E+ KL+ Sbjct: 134 LKKKASVLEAKKLGEQELKVWIRERAAQNGVQIEEDAVQLMLTLAGTNLFMLTGEIDKLA 193 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E+ LI + V ++ + I +++ + KI A+ + L +L Sbjct: 194 LYADEEKLIDAEAVDKLVARSLEQNIFTLVDKVVHRKIDEALRIYYDLLKQNEEPIKILS 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+L I+ +KE S + + + P + + +++ + + Sbjct: 254 ILTGQFRL---IYQVKELSRRGYGQQQTAGYLKVHPFRVKLAAGQAQLFGDEELSRIMKL 310 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ +I + + Sbjct: 311 LAEADYEMKTGGMNKEMLIEMFLFRL 336 >gi|254490458|ref|ZP_05103644.1| DNA polymerase III, delta subunit [Methylophaga thiooxidans DMS010] gi|224464202|gb|EEF80465.1| DNA polymerase III, delta subunit [Methylophaga thiooxydans DMS010] Length = 339 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 114/300 (38%), Gaps = 11/300 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L+ E + ++ + + + + + + S + SLF+ Sbjct: 19 VYLIYGDEALLVEEAAEKVRQQVRQAGANDREVWHVESRF---DWSQIKWHEQTLSLFAS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139 +++I I + S K + L + + + ++I S +I + K E Sbjct: 76 QRLIEIRLPSGSPGKDGGEALRRFVAEPPADTTLLIISGKIDARSQKAKWFTELDRLGAT 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I +P + + L I + + +K+ ++ + G+ A+ E+ KL D Sbjct: 136 IPVWPIDIVQLPSWINQRMQQKGLKSNKQFASLIAERVEGNLFAAAQEVDKLQLLS-TDG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +TE + + D +++ + G+ + + A + A+ + Sbjct: 195 ELTESLILQSVADNARFEAFGLMDTVLMGQSAKIPRIIERLRAEGVDILAVFSAVAWSLR 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKIDHR 316 + + + E++ + + +++++++L+ +++ + + +ID Sbjct: 255 RMVDMSEQLQ-QGAQLERVFASQKPPVWDKNKSVMRQALQRYDQQHWRLCLQQMAEIDQA 313 >gi|313633200|gb|EFS00078.1| DNA polymerase III, delta subunit [Listeria seeligeri FSL N1-067] Length = 343 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGDEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L++EK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+ A L+ G + NELQKL Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLHENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYSFETKEITIQVVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S +++ K + + P + + + + +++ + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309 Query: 313 IDHRIHLAR 321 + + + Sbjct: 310 LAEIDYEMK 318 >gi|291522753|emb|CBK81046.1| DNA polymerase III, delta subunit [Coprococcus catus GD/7] Length = 327 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 112/313 (35%), Gaps = 6/313 (1%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L + ++ K I D + I + ++ FS Sbjct: 15 NVYLLYGDEAYLRNQYRDKL-KKAMINEGDTMNFSCFEGKGI--DEKELTAMADTVPFFS 71 Query: 82 KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++I++EN K + L E + I+ +E+ K + L K + Sbjct: 72 DYRLIIVENSGFFKTSGHEALAEYMKHIPETTCIVFVESEVDKRSKLFKAVSSTGYAANL 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + D LM + + K I ++ Q L + D R E++KL Y + Sbjct: 132 TMPGD--KQLMLWLGGIVKRENKMIQEQTMQYFLQLVEHDMNGMRQEMEKLICYVGHRQV 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + V + C + ++I+A + A+ L D +A K P +L+ +++F Sbjct: 190 IEKADVDAVCCVFVENKVFDMISAVAEKNQKRAMQLYDDLVALKEPPMRILYLMIKQFNT 249 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L ++ + + + ++ I + L I +++ I Sbjct: 250 LYEVRDLAVKGYPASAIAEKTAIRDFIVKRNISLGRHFEIAALREAVAYGTELEEEIKTG 309 Query: 321 RKKKYLEKNIIFQ 333 R L ++ Q Sbjct: 310 RITDRLAVELMIQ 322 >gi|226324469|ref|ZP_03799987.1| hypothetical protein COPCOM_02250 [Coprococcus comes ATCC 27758] gi|225206917|gb|EEG89271.1| hypothetical protein COPCOM_02250 [Coprococcus comes ATCC 27758] Length = 267 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 8/203 (3%) Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F+++++I++EN K L E + +I +E+ K L K ++ ++ Sbjct: 7 FFAERRLIVLENTGFLKNATPELAEYLKNMPETTYMIFVESELDKRGKLYKAIKEKGHIV 66 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + ++ L+ I + +S+ A + LLA G D EL+KL YC+ Sbjct: 67 ELK--RQDEKTLIRWILGMAKKEKLQMSEAAVRYLLAKTGNDMENLGQELEKLFCYCMNH 124 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT + +I +I ++++A + A+ L K P +L+ ++F Sbjct: 125 TEITAADIDEICTTQIGNHIFDMVDAVAAKEQKKALDYYYDLLTLKEPPMRILYLLTRQF 184 Query: 259 QLLEKIHIIKECSNISFEKIIQK 281 I+ E + I QK Sbjct: 185 ------RILMEVKEMDRTGIPQK 201 >gi|313637793|gb|EFS03143.1| DNA polymerase III, delta subunit [Listeria seeligeri FSL S4-171] Length = 343 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 14/309 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L++EK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L IE L +S+ A L+ G + NELQKL Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLHENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E IT Q V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYSFETKEITIQVVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S +++ K + + P + + + + +++ + + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309 Query: 313 IDHRIHLAR 321 + + + Sbjct: 310 LAEIDYEMK 318 >gi|192360566|ref|YP_001980975.1| DNA polymerase III subunit delta [Cellvibrio japonicus Ueda107] gi|190686731|gb|ACE84409.1| DNA polymerase III, delta subunit [Cellvibrio japonicus Ueda107] Length = 349 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 115/327 (35%), Gaps = 16/327 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M + + TK L +++ G + LI E + + F L Sbjct: 1 MPKLRPEQLAAALTKQLA---PIYLVSGDEPLLIQEACDSIRAAARKQG---FGERELYH 54 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKS 118 + + NS SLF++KKII + S K L+E +++++I + Sbjct: 55 ADSNFEWGQLLSAANSLSLFAEKKIIELRMPSGKPGDKGGKILQEYAQSPAPDNLLLIVT 114 Query: 119 NEIKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 ++ K + I +P +L I + L +A ++L + + Sbjct: 115 EKLDGAAQKSKWFKALEDAGQHIQVWPITAGNLPRWIGQRLQQAGLQADPDAIELLASRI 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ E++KL I + + + D+ + + + + G A+ Sbjct: 175 EGNLLAAVQEIEKLKLLA-NQGRINYELMASAVADSARYDVFGLTDKALHGDARAAVKTL 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +L + ++L ++ F+ ++ + ++ +++ + Sbjct: 234 HGLKTEGTEPITILWAITRDIRILIQV-SQAVGQGKHFDWAAKQAG--VWDKRQPLIKAA 290 Query: 298 LRIWNKNLVRETLHK---IDHRIHLAR 321 L +++ L K ID I R Sbjct: 291 LNRLKPAQLQQLLRKANGIDKAIKGMR 317 >gi|39997305|ref|NP_953256.1| DNA polymerase III subunit delta [Geobacter sulfurreducens PCA] gi|39984196|gb|AAR35583.1| DNA polymerase III, delta subunit, putative [Geobacter sulfurreducens PCA] gi|298506243|gb|ADI84966.1| DNA polymerase III, delta subunit [Geobacter sulfurreducens KN400] Length = 337 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 39/319 (12%), Positives = 109/319 (34%), Gaps = 10/319 (3%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++S + + ++ FYG + L+ + + + + F+L V E Sbjct: 1 MKSDELDNAIERGEIA--PLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNES 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + + + +F+ ++++L++ L+ L + ++ ++I Sbjct: 59 KGD--DIATAAQTLPMFADRRMVLVKRAGDLSAAALETLAACVADPAPQTCLLFVGDKID 116 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + + + L I + K I A ++L+ +G + Sbjct: 117 KRKKF--FLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGAAVEMLVYLVGNNLG 174 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +L+K++++ +T + V++++ DT V + ++ NA + + ++ L Sbjct: 175 ELATQLEKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILR 234 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL + F+ L ++ + E + + + R + Sbjct: 235 DGEAPLMLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLK---GVMDQARNFT 291 Query: 303 KNLVRETLHKIDHRIHLAR 321 +R + + Sbjct: 292 VADLRRVFEGLYAADLALK 310 >gi|226943039|ref|YP_002798112.1| DNA polymerase III subunit delta [Azotobacter vinelandii DJ] gi|226717966|gb|ACO77137.1| DNA polymerase III, delta subunit [Azotobacter vinelandii DJ] Length = 346 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 132/329 (40%), Gaps = 13/329 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L E + + + +A + + S SLF+ Sbjct: 18 PVYVVSGDEPLLCQEACDAIRTAARAQGFSERQVFNADAGF---DWNQLHEAGASLSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTS 136 +K+++ I N K + E + + +++++I ++ + K Sbjct: 75 EKRLLELRIANGKPGDKGAAAILEYLARPAEDNLLLIDLPKLDAATQKSKWAKALLDAPQ 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V + +P + L I + L + S+EA +++ A + G+ +A+ E++KL Sbjct: 135 VQFVQVWPVDAQQLPQWIRQRLAQAGLAASQEALELIAARVEGNLLAAAQEIEKLKLLA- 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E+ I+ V+ + D+ + +++A + G+ +A+ + + + + +L + Sbjct: 194 ENNQISADTVQAAVADSARFDVFGLLDAALAGQAAHALRMLEGLRGEGVETPVILWALAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + L + + + EK + I +R +L ++L+ ++ + L +D + Sbjct: 254 ELRQLAGL-AQQYAQGVPLEKAFAQARPPIWEKRRPLLAKALQRYSATRWSQLL--LDAQ 310 Query: 317 IHLAR-KKKYLEKNIIFQTILYIAQTACK 344 + A+ K + + L +A + Sbjct: 311 LIDAQIKGQAEGEPWNGLARLALAIAGQR 339 >gi|154482560|ref|ZP_02025008.1| hypothetical protein EUBVEN_00227 [Eubacterium ventriosum ATCC 27560] gi|149736585|gb|EDM52471.1| hypothetical protein EUBVEN_00227 [Eubacterium ventriosum ATCC 27560] Length = 283 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 105/272 (38%), Gaps = 8/272 (2%) Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +I+ + + F++ ++I++EN K + L E + I + +++ K + Sbjct: 12 DINEVIDSAETVPFFAEYRLIVMENTGLFKSGGEQLAEYMKTIPSTTIFLFVESDVDKRS 71 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + K + + I + + K I+K L+A++G D Sbjct: 72 KMYKAVKSAGYICEI--NRQTENDIAIWAARIFDYNGKKITKANMSYLIASVGTDMEVLS 129 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E++KL SY L +I+++ + + + I ++++A + +A K Sbjct: 130 REIEKLISYALNKNVISKEDIDAVCIKQLNVRIFDMMDAISVKNQKKTLDCYYELIAEKE 189 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 P +L ++F L+ + ++ E++ + I R ++ Sbjct: 190 PPMRILFMISRQFNLMLQAK-DLSSRGMNREQVAHTMGVQSFIAGKCI--NQCRNFSMAE 246 Query: 306 VRETL-HKIDHRIHLARKKKYLEKNIIFQTIL 336 ++ L ++ + K +++NI + +L Sbjct: 247 LKSGLAESVNTESLI--KSGMMDENIGVEMLL 276 >gi|229828445|ref|ZP_04454514.1| hypothetical protein GCWU000342_00506 [Shuttleworthia satelles DSM 14600] gi|229793039|gb|EEP29153.1| hypothetical protein GCWU000342_00506 [Shuttleworthia satelles DSM 14600] Length = 334 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 112/316 (35%), Gaps = 13/316 (4%) Query: 21 HFVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 H ++ YG D + + FS + + +++ + + Sbjct: 23 HRAYLLYGEEDYLKLQYRDRLVRALTGGQESMNFSRMEGDDCDLKG----LIDLAQTMPF 78 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 F+ + ILI D L + ++I ++K+ K K+ Sbjct: 79 FADHRCILIMESGFFNSSNDELAAYLETVPETAVLIFVEKAVRKSTRPFKAITKYGYAC- 137 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++ LM I L +K++S EA + G + E +KL +YCL+ Sbjct: 138 -EFLKPDERTLMQWIGGRLSKEKKTMSPEAWREFFLRSGENMENMEREYEKLVTYCLDRE 196 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I V+ I + ++I+A + + +A+K P +L ++F Sbjct: 197 RIELDDVRAITSRPLNNRVFDLIDAMARRDGKLLLEHYADMIAAKEPPLRILSLIERQFI 256 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHR 316 + + ++S +I QK + P ++ S +++ +R+ L ++ R Sbjct: 257 QMLAVR-QMSSDHLSDREIGQKI--AVSPYIVGKIRRSSESYSQEQIRQLLADASDMEER 313 Query: 317 IHLARKKKYLEKNIIF 332 I + L ++ Sbjct: 314 IKTGKITDRLGVEVLM 329 >gi|225567877|ref|ZP_03776902.1| hypothetical protein CLOHYLEM_03950 [Clostridium hylemonae DSM 15053] gi|225163355|gb|EEG75974.1| hypothetical protein CLOHYLEM_03950 [Clostridium hylemonae DSM 15053] Length = 326 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 112/311 (36%), Gaps = 11/311 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG + L + ++ + + D + I I+ + + F++ Sbjct: 16 VYLLYGEEAYLKKQYKDKLTRAMLPD-GDTVNYAYYEGKGIH--ITELIDLAETMPFFAE 72 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I++EN K L + I + +E K + K + V+ + Sbjct: 73 RRLIVVENSGLFKNAAPELADYIRSMPGTACFLFVESETDKRGKMFKAVKDKGRVVEMG- 131 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 ++ L+ + ++ K I + + L++ G D EL+KL Y ++ IT Sbjct: 132 -RQDEKTLIMWVGGNVKREGKQIKESTVRYLISKTGTDMENLDRELEKLFCYAIDRSEIT 190 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + + I ++I A A+ LA K P +L+ ++F+LL Sbjct: 191 PADIDAVCTTQITNKIFDMIEAVAAKHQKKALDYYYDLLALKEPPMRILYLLSRQFKLLY 250 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319 ++ + +I + + + I R + + ++ + + + Sbjct: 251 EVKDLL-GRGFDKAQIAKTAGLHPFVAGKYI--SQSRTFAVHELKRIMEDAADTEELVKT 307 Query: 320 ARKKKYLEKNI 330 R + + Sbjct: 308 GRLNDVMSVEL 318 >gi|296282120|ref|ZP_06860118.1| DNA polymerase III delta subunit [Citromicrobium bathyomarinum JL354] Length = 349 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 108/327 (33%), Gaps = 13/327 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F G D + I D V L+ E++++ +E S+SLF Sbjct: 30 FFLCGPD----ESAASAAAATIVGNLKDAGERVDLSGAELRRDPVRLADEARSSSLFGDA 85 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 + IL+ E D L+ + +++ + + K+ L Y Sbjct: 86 RHILVRATGEEAH--DALKLHLEAEGEACPVLVVAVNATDKSRSAKLVAGAKGTLVAMFY 143 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 P N + + + + + + Q + G DR + E++KL+ Y L+ T Sbjct: 144 PPNLGDMANTVRDLADRAGLRLGGDLAQRIARASGLDRRLAEAEVEKLALY-LDAAPDTP 202 Query: 204 QHVKDIICDTHVLYIEE-----IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + D EE ++NA + G + + F ++ Sbjct: 203 KTADAAAWDAIGASSEEDGFMPLVNAALGGHAKRLPGELARLHTLALNPVGVALAFERRA 262 Query: 259 QLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L ++ ++ QK + I L E LRIW + + ++ Sbjct: 263 AHLAQLSARMRPGEDVGSFVDAQKRARRIFFKDERDLAEQLRIWRGKRLDRLVSRLTALH 322 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344 + ++ Q I +IA+ A + Sbjct: 323 QALLANSQQAELLLSQEIAWIARVASR 349 >gi|116872910|ref|YP_849691.1| DNA polymerase III subunit delta [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741788|emb|CAK20912.1| DNA polymerase III delta subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 343 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 118/303 (38%), Gaps = 14/303 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ + E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PVEMVIQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L++EK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + I N+ L +E L + +EA L+ G + NELQKL Sbjct: 133 LKKTATVIEAKRPNENELKKWLEAKLTENNMQMEQEAIIRLIELTSGQLTTAMNELQKLM 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC + IT Q+V+ ++ + I +++ I I A+ + L K +L Sbjct: 193 LYCFDSKKITIQNVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ ++ E S ++ K + + P + + + + +++ + L + Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSELQLNRALKR 309 Query: 313 IDH 315 + Sbjct: 310 LAE 312 >gi|294055838|ref|YP_003549496.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM 45221] gi|293615171|gb|ADE55326.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM 45221] Length = 364 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 107/263 (40%), Gaps = 17/263 (6%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINSTSLFSK 82 G D L+ E ++ + + D S V++ E+++ + F + + + S+F + Sbjct: 11 GDDDYLVSERGKEWFRAQTKDLMDDLSKEVIDGRAGNYAEVEEALGRFRSAVQTLSMFGE 70 Query: 83 KKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKI 130 +K++ +++ +LD L+ + + ++I + + K K Sbjct: 71 RKVVWLKDVNFLADSVTGRAQGTLDLLDDLKGFLGGIDPSGVGVLITAQPVDKRRAFFKW 130 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K AI+ D+ L LIEE IS++A Q+L+ + G+ E +K Sbjct: 131 IQKTAEFTAIAGGKDSAQALAALIEEQCKAAGAQISRDAVQLLIGKVNGNTRLIVEECRK 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L ++ E I E+ V D++ + E +A K+ + + S L Sbjct: 191 LCTFVGEGGSIGERLVVDLVPNFGDADFFEAADAFFSLKLDWTLEALRRHFFTNNDSRGL 250 Query: 251 LHGFLQKFQLLEKIHIIKECSNI 273 L + +LL ++ ++ + I Sbjct: 251 LGSLQSRNRLLIQLRVLLDAKAI 273 >gi|241896585|ref|ZP_04783881.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC 33313] gi|241870177|gb|EER73928.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC 33313] Length = 347 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 126/321 (39%), Gaps = 27/321 (8%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NEINSTSL 79 + ++ G D+ LI N ++ H + L ++ + + ++ S Sbjct: 24 YPIYFVQGQDQYLI----NLVREKFLTIIHPDDRALNLAQFDLTEVPLSLAIDDAKSVPF 79 Query: 80 FSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 F ++++++ S + ++ L + I + I++I + ++ + Sbjct: 80 FGNQRVVILDNPYFLTGERQKSNLEHHVEDLVDYIKQPEPQTIVVIFAPYDKLDNRKKVT 139 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ L+ D + I++ + I+ AKQ L+ +EL Sbjct: 140 KLLKEQARYLSFVNLSD--KDINRFIDQRVNEAGYFINSAAKQELIRLTNSSLTQIMSEL 197 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL Y L + I VK+++ T I ++I+ ++G++ A+ L L++ Sbjct: 198 DKLMLYTLSEKQINVSDVKELVTHTLSENIFDLIDCLLKGQLTRAVNLYHELLSTGEEPL 257 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L + +F+LL + + S S + I + + + P + + + +R ++ + Sbjct: 258 RLHGALIGQFRLL----LQVKSSEKSEKGIASELK--VHPYRVKLAKRVVRKFSYVRLAS 311 Query: 309 T---LHKIDHRIHLARKKKYL 326 L ++ ++ + L Sbjct: 312 AYLGLVSMEEQLKSTSRDPEL 332 >gi|120555657|ref|YP_960008.1| DNA polymerase III, delta subunit [Marinobacter aquaeolei VT8] gi|120325506|gb|ABM19821.1| DNA polymerase III, delta subunit [Marinobacter aquaeolei VT8] Length = 337 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 121/310 (39%), Gaps = 14/310 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNISTFWNEINSTSLFS 81 V++ G + LI E +Q + + L L + Q + +T +E N+ SLF+ Sbjct: 19 VYLISGDEPLLIQECCDQVRAAAREAGY----LDRLTFHADNQFDWNTVADECNALSLFA 74 Query: 82 KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVL 138 +K+ I I +L T K LE+++ + I+++ S + T RK E + Sbjct: 75 EKRRIEI-HLPTGKLGDGRRVLEQVLQSPPEDVILLLISARLDAAETKRKWYKELQGHGV 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + +P +++ S+++ A IL L G+ +A+ EL +L+ Sbjct: 134 HVPIWPVEGDKFPGWLQQRATAKGLSLTRGALDILAERLEGNLLAASQELDRLTLLTNG- 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I E+ V+ + D+ E++ + GK +A + LL ++ Sbjct: 193 KTIDEETVEQAVQDSARFNGFELVTELLSGKAVHACRMIGVLEQEGENPLGLLTVLVRDL 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L+ ++ + ++ + P + +Q++ R + + + ++ Sbjct: 253 HLIVELKTALPQGENPAGFL---KKRGVFQPKRSAAVQQAARRLSLAQLHQAINLCSQTD 309 Query: 318 HLARKKKYLE 327 A+ L Sbjct: 310 RAAKGFDSLS 319 >gi|296123825|ref|YP_003631603.1| DNA polymerase III, subunit delta [Planctomyces limnophilus DSM 3776] gi|296016165|gb|ADG69404.1| DNA polymerase III, delta subunit [Planctomyces limnophilus DSM 3776] Length = 328 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 109/303 (35%), Gaps = 11/303 (3%) Query: 37 LINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE- 94 N + I + D SL L + +E++ S++ +++I+IE Sbjct: 28 RQNVLARLIELALGGDDASLTRLTGKTAEW--PNVKDELSMVSMWGDRRLIVIEEADDFV 85 Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 K +E+ + I++++ + K + K+ + L + C L + Sbjct: 86 SKYRGSIEKYFEQPAKKSILLLEVKSLPKTTRIAKLC--ASKGLEVDCSELKGPALNKWL 143 Query: 155 EESLL-IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 K++++EA +L+ +G D EL KLSSY I + V+ ++ Sbjct: 144 TNLAKVQFGKTLTREALSLLVELVGEDLGTYEQELSKLSSYTGARTQIELEDVRSMVGGW 203 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + +A G++ ++ + L + LL G ++ L + ++ Sbjct: 204 TTETTWSMTDAARDGQLARSLECLEDLLRANEAPQKLLGGISFVYRKLAI--AAELSRSM 261 Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333 + +++ + P + ++ R + + + L + I + Sbjct: 262 PLPQAMKEAG--VFPRDQGAVEAYFRRIGRARADRLYQILLEADLGLKGGSKLPERIQME 319 Query: 334 TIL 336 +L Sbjct: 320 RLL 322 >gi|163816653|ref|ZP_02208016.1| hypothetical protein COPEUT_02843 [Coprococcus eutactus ATCC 27759] gi|158447910|gb|EDP24905.1| hypothetical protein COPEUT_02843 [Coprococcus eutactus ATCC 27759] Length = 338 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 39/335 (11%), Positives = 122/335 (36%), Gaps = 19/335 (5%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I+S +F + +++ YG ++ L+ + ++ ++ D + + + Sbjct: 20 IKSGEFAK-----------IYLLYGKERYLVNQYRDKLLGALT-DKDDNLNFMKFAGNGV 67 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 N + N F+ ++++L+EN K + + +I ++I ++ Sbjct: 68 --NTQEIIDFSNEMPFFADRRVVLVENSGLFKSSNEEFAKKLINIENTSVVIFVEMDVDT 125 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 L K E + A+ ++ ++ ++ + + + A ++ + D Sbjct: 126 RYKLYK--EVDKNGEALEFVTPDEKMMVTWVKSIFRDAEVATTDTAIYRIIESAKMDMNC 183 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 +NE+ K+ SY + ++E V + + ++I+ I + A + L + Sbjct: 184 IKNEVDKMISYAGDTKQVSEYDVDLLCSQDAESKVYQMIDLIIAKQKEKAARMYHDLLEN 243 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 K + ++++ L + + + + +N + R + Sbjct: 244 KEAPIMINSCIMRQYNKLLLVKMAMAEGAQDASLAKLTSGP--VWAVKN-YKAQCRPYTV 300 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 ++ + K + + + + ++ + I+ + Sbjct: 301 EQLKGIVEKCNDMDYKLKTGQVMDAAALEVMIVEL 335 >gi|299822874|ref|ZP_07054760.1| DNA-directed DNA polymerase III delta subunit [Listeria grayi DSM 20601] gi|299816403|gb|EFI83641.1| DNA-directed DNA polymerase III delta subunit [Listeria grayi DSM 20601] Length = 342 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 120/311 (38%), Gaps = 18/311 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G++ +I E + I + F+ + E + T E S F Sbjct: 15 PLYLIIGTEDYIINETKKKLSDQILEAENSEFNYANFDLEET--PVETVIEEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKVL------DCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130 +++++ N L+ EK + LE + + ++ I + ++ + L K+ Sbjct: 73 DRRLVIASNPVFLTAEKTKSKIEHRTENLERYLAEPAPYSVLCIIARTPKLDERKKLTKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K I P + L + + + I A L+ + S NELQK Sbjct: 133 IKKQ--ATVIEAKPPAEKELKQWLMNEIAKAEMKIEPAALDRLIELTNINLTTSMNELQK 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y E+ L+T V+ ++ + I +++ I I A+ + L K + Sbjct: 191 LMLYGQEERLVTVDSVEQLVVRSLEQNIFLLLDKMIAFDIAGALRIYYDLLKQKEEPIKI 250 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+LL ++ I+ E S +++ K + P + + R +++ + L Sbjct: 251 MALIASQFRLLNQLKIL-EKQGYSQQQMATKLR--VHPFRVKLASRQARNFSQPDLDFIL 307 Query: 311 HKIDHRIHLAR 321 ++ + + Sbjct: 308 KQLAAIDYELK 318 >gi|282889594|ref|ZP_06298135.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500517|gb|EFB42795.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 341 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 125/326 (38%), Gaps = 16/326 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ D + N +K + P++ V A + I E+N+ +F Sbjct: 23 PIYLLITPDDFERQKAENLLRKEVLGGQMSSPYAFVQKEAESL--PIQELKEELNTGDMF 80 Query: 81 SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + ++++LI++L KK LEE + ++ + + L K EK + Sbjct: 81 ASRRVVLIQHLDALKKPQREYLEEYCLHPSAQLCLVCSAATFNRTTQLYKKMEKAGVIFD 140 Query: 140 IS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + K + +I ++ + KS+ A Q+L+ +G +R EL+KL Y Sbjct: 141 VEEKKPWELEKYLIEQVIADA-RVEGKSMDSSAAQLLVKQVGTNRSMLHQELEKLCCYVG 199 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT Q ++ I + I ++ +A Q I + I + L P LL Sbjct: 200 NRTSITTQDIQAICANVPSETIWQLGDAIFQRDIKSVIRIGLALLDEGTPFLILLRQIRS 259 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL---RIWNKNLVRETLHKI 313 +FQ ++ I + + MK IL+++L R + ++ + I Sbjct: 260 QFQTKYQLCSIHAAGGSPADMA---AQFP--YMKGAILEKNLSMARAYGLERFKKGMMLI 314 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIA 339 D LA+ + + + + Sbjct: 315 DETELLAKNSGSDTACLAERLFIKLT 340 >gi|294501311|ref|YP_003565011.1| DNA polymerase III subunit delta [Bacillus megaterium QM B1551] gi|295706658|ref|YP_003599733.1| DNA polymerase III subunit delta [Bacillus megaterium DSM 319] gi|294351248|gb|ADE71577.1| DNA polymerase III, delta subunit [Bacillus megaterium QM B1551] gi|294804317|gb|ADF41383.1| DNA polymerase III, delta subunit [Bacillus megaterium DSM 319] Length = 338 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 130/326 (39%), Gaps = 19/326 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + + ++ ++ F+L + + E I + + Sbjct: 16 PVYLIHGVNAFMSKKIRDKIVDYTLNEEDKEFNLSLYDLEETS--IDQVLEDAETLPFLG 73 Query: 82 KKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 K++++ +N + EK L L++ + + +I+ + ++ + + K+ Sbjct: 74 DKRVVVAKNAAFLTAEKSKDKVEHDLAKLQQYVEQPPSFSTLILLAPYEKLDERKKITKL 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K I + + I L ++ ++A +L+ +G + NE++K Sbjct: 134 LKKQ--AAYIEANEFGEKEMKQWIHNLLSKDGVNMDEDAVTLLIQLVGLNVTLVTNEIEK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + Y +D +IT++ V ++ T + +I+A IQ K+ A+ + L + + Sbjct: 192 MVLYVGQDGVITKEVVLKLVAKTLEQNVFTLIDAVIQRKVSTALNMYQDLLRNNEEPIKI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+L+ ++I Q + + P + I + R + + ++E L Sbjct: 252 LSLLATQFRLIYHTK-QLSSQGYGQQQIAQTIK--VHPFRVKIALQQSRSFEEQQLKEIL 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336 + + K ++K +I Q L Sbjct: 309 KDLAEADYEM-KTGKMDKALILQLFL 333 >gi|56963415|ref|YP_175146.1| DNA polymerase III subunit delta [Bacillus clausii KSM-K16] gi|56909658|dbj|BAD64185.1| DNA polymerase III delta subunit HolA [Bacillus clausii KSM-K16] Length = 340 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80 V+ YG+++ LI + + + + + + + L +Q E + F Sbjct: 17 PVYFLYGTERYLIEQFLQKASEALFAGEEGEMNDIRL---RLQDTPLGEVVEEAETVPFF 73 Query: 81 SKKKIILIEN--LSTEKKV-------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 SK+K+++I++ L+T +KV + LE + ++++ + K + + Sbjct: 74 SKRKLVVIQDFYLATSQKVATKLEHDIPALEAYLDSPAQETVLVVVAPYEKLDERKKITK 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + AI P ++ +E +I ++AKQ+L G + + EL+K Sbjct: 134 KLKKQTSAIDVNPFDEKETFAWMEAIAKQEGVAIEQDAKQLLYKRTGPNLMLLHRELEKC 193 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + +T V +++ +T + +I+ T +G+ +A+ L L K A+L Sbjct: 194 MLYSKDGDPVTASIVDELVAETVEQSVFTVIDYTAKGRAGDAVRLYHQLLRQKEEPLAIL 253 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++F+ ++ E Q + P + + ++ +R+ L Sbjct: 254 ALLTRQFRQFFQVKTRLAKGYTQKEMASQLK---LHPYVVKLAMQQVKALTTKQLRQAL 309 >gi|126666973|ref|ZP_01737949.1| DNA polymerase III subunit delta [Marinobacter sp. ELB17] gi|126628689|gb|EAZ99310.1| DNA polymerase III subunit delta [Marinobacter sp. ELB17] Length = 334 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 123/311 (39%), Gaps = 15/311 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNISTFWNEINSTSLF 80 V++ G + L+ E +Q +K D L L + + + +E ++ SLF Sbjct: 18 PVYLVSGDEPLLVQECCDQIRKVA----RDQGFLDRLTFHADNHFDWNIVADEFSAMSLF 73 Query: 81 SKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSV 137 ++K+ I + +L T K +E I+ + + ++++ S + T RK + Sbjct: 74 AEKRRIEV-HLPTGKLGDGRAVMERILAQPADDIVLLLISARLDAAETRRKWYKDLQGKG 132 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L + +P + +++ +++++A IL L G+ +A+ EL++L + Sbjct: 133 LHVPVWPVDADKFPGWLQQRAASRGLTLTRDALAILAERLEGNLLAASQELERLVLFSKG 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I E V+ + D+ E+++ + G +A + LL + Sbjct: 193 -ATIDEGLVEQAVQDSSRFNGFELVSELLTGNASHACKMIGILQQEGENPLGLLTVLARD 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHR 316 LL ++ S + ++ + P + L+++ + N++ + +H Sbjct: 252 IHLLLELK----ASGQNTAPAAFFKKRGVFQPQRAKALEQAAKRLNRSQLNNAIHLCSEV 307 Query: 317 IHLARKKKYLE 327 A+ L Sbjct: 308 DRAAKGFDPLG 318 >gi|311695366|gb|ADP98239.1| DNA polymerase III, delta subunit [marine bacterium HP15] Length = 335 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 123/312 (39%), Gaps = 16/312 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNA-LEIQKNISTFWNEINSTSL 79 V++ G + L+ E +Q +K +HD L + Q + + E ++ SL Sbjct: 18 PVYLISGDEPLLVQECCDQVRKAAKDAGFHD-----RLTFHADHQLDWNAVGEEFSAMSL 72 Query: 80 FSKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTS 136 F++K+ I I +L T K LE ++ + I+++ S + T RK E Sbjct: 73 FAEKRRIEI-HLPTGKLGDGRAVLERVLADPPDDIILVLISARLDAAETRRKWYKELQGK 131 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + +P + +++ S+++ A I+ L G+ +A+ EL +LS Sbjct: 132 GVHVPVWPVDADKFQGWLQQRASNRGLSLTRGALAIMSERLEGNLLAASQELDRLSLLAN 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + I E+ V+ + D+ E++ I G+ +A + LL + Sbjct: 192 GN-TIDEETVEQAVQDSSRFNGFELVTELISGRAPHAGKMITVLQQEGENPLGLLSVLSR 250 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDH 315 LL ++ S + ++ + P + ++++ R N+N + + + Sbjct: 251 DLNLLLELKSAAGQSENPAAFL---KKRGVFQPQRARAMEQAARRLNRNQLNKAITLCSQ 307 Query: 316 RIHLARKKKYLE 327 A+ L Sbjct: 308 IDRAAKGFDSLS 319 >gi|292490671|ref|YP_003526110.1| DNA polymerase III subunit delta [Nitrosococcus halophilus Nc4] gi|291579266|gb|ADE13723.1| DNA polymerase III, delta subunit [Nitrosococcus halophilus Nc4] Length = 351 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 35/297 (11%), Positives = 107/297 (36%), Gaps = 10/297 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + LI E + + + ++ ++ + S SLF+ Sbjct: 18 PIYLLFGDEPLLIEEAADLIRAQARSQGFNEREVMHVDRGF---DWGQLQLATESLSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 ++++ + + L+ + +++I SN++++ + + Sbjct: 75 SRRLLELRLSGGGVGEPGAKALQAYGKDPSRDTLLLIISNKLERRHQGSSWFSLLEQAGV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + + L IE + + EA L L G+ +A E+ KL+ C + Sbjct: 135 VVQVFKVDPSLLPRWIERRMQSKNLHPTPEAVTALAERLEGNLLACAQEIDKLALLC-PE 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I V++++ D+ ++ + + G + + A + +L + Sbjct: 194 GTIDIHGVEEVVADSARYDAFRLVESALAGDVVRISRIWRGLRAEGVDPSVVLGALAWEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + L ++ ++ +++ + ++ + +++L R L ++ Sbjct: 254 RRLVRV-ATACAQGTPVDQALREER--VWERRKALSKQALSRHAAYRWRIFLQRLSD 307 >gi|328676247|gb|AEB27117.1| DNA polymerase III delta subunit [Francisella cf. novicida Fx1] Length = 325 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQF KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + ++ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|118496787|ref|YP_897837.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida U112] gi|194324532|ref|ZP_03058304.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida FTE] gi|118422693|gb|ABK89083.1| DNA polymerase III, delta subunit [Francisella novicida U112] gi|194321367|gb|EDX18853.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. novicida FTE] Length = 325 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQF KN I+YHD +NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SDQNIDI 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + ++ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|307544815|ref|YP_003897294.1| DNA polymerase III subunit delta [Halomonas elongata DSM 2581] gi|307216839|emb|CBV42109.1| DNA polymerase III subunit delta [Halomonas elongata DSM 2581] Length = 352 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 112/303 (36%), Gaps = 10/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V I G + E + ++ + ++ + A S SLF+ Sbjct: 18 PVVIVAGDEPLQHMEACDAVRRTAREAGIEEREVLHVEANF---PWGRLLESAASLSLFA 74 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNIC-NHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +K+I + N ++ L+E ++I++I S ++ + L Sbjct: 75 SRKLIELRLNGKPGQEGAKALKEYAEGMSGSDNILLIASAKLDYREQKSAWFKALDKAGL 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + +P + L + + ++ +A ++L G+ +A+ ELQKL+ Sbjct: 135 FVPVWPVDASRLHFWLRDRASRHGLTLDLDAARLLGERTEGNLLAADQELQKLALLLPPG 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I+ Q V + D+ + +++A ++G+ + + +L ++ Sbjct: 195 ARISPQQVAGGVEDSARYDVFTLLDACLKGERARVSRILGGLRGEGVEPPIVLWALTREL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDH 315 +LL IH + S E + + I +R Q++++ + + L ++D Sbjct: 255 RLLLSIHQHLD-QGQSLEHACKAQKPPIFDKRRPAYQQAIQRLPMKRLHKLLLFAQRLDL 313 Query: 316 RIH 318 I Sbjct: 314 TIK 316 >gi|116618681|ref|YP_819052.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097528|gb|ABJ62679.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 333 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 135/329 (41%), Gaps = 24/329 (7%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +Q+ +N +++F +I G ++ L+ + F K + + ++ E + + Sbjct: 6 LQQQIENNAMANF-YIVTGEEETLLSHAKSMF-KGLVDQEDRDMNYSQIDLTE--QTLDV 61 Query: 70 FWNEINSTSLFSKKKIILIEN----LSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIK 122 N+ S F +++++++N +T K + L ++ + + +I++ +N++K Sbjct: 62 VINDAMSVPFFGDRRVVVVKNPQFLTATGKVGDRDQELLLKLFDQPVLQNIVVFFANDLK 121 Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K L K+ K +++ N+ I + L +I EA L+ Sbjct: 122 LDKRKKLAKVLLKTAENISLP--ALNERQAQQAIVQQLDQRSYAIEPEALHELMQRTNAQ 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +NEL KL +Y + IT V ++ T ++++A I+ + A+ L Sbjct: 180 YTDMKNELPKLITYAEQTKKITLDVVSALVPKTLTANAFDLVDAVIKRRPQEALTLYHDL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + L +F+LL + + + + I + + + P + + +E+LR Sbjct: 240 LQNGEAPLRLNAVLTNQFRLL----LQVAGLSGNDQDIGAQLK--VHPYRVKLAKEALRS 293 Query: 301 WNKNLVRE---TLHKIDHRIHLARKKKYL 326 + VR + I+ ++ + L Sbjct: 294 YPPQFVRTGYLGMIDIETQLKSTSQDPEL 322 >gi|118580153|ref|YP_901403.1| DNA polymerase III subunit delta [Pelobacter propionicus DSM 2379] gi|118502863|gb|ABK99345.1| DNA polymerase III, delta subunit [Pelobacter propionicus DSM 2379] Length = 338 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 102/299 (34%), Gaps = 10/299 (3%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YG + LI + F+ V E + + + +F++++ Sbjct: 21 LYGEESFLIERATRLLLEKAVDPSLKDFNFNVFFGNESRG--IDIVDAALTLPMFAERRA 78 Query: 86 ILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +L++ K L+ L E + ++ +K + +K ++ A+ Y Sbjct: 79 VLVKRAELLKVDALEVLLEYLRNPATGTCLVFNG--LKIDQR-KKFFQELKKQGALVEYK 135 Query: 145 D-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + L I K + A +L +G + ++++KL Y + IT Sbjct: 136 RLYENKLSAFILGEAKTQGKPMEPAAADLLSFLIGNNLQELSSQIEKLVLYAGDRPRITL 195 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+++ + + E+ + +A+ D + +L + F+ L + Sbjct: 196 DDVREVASSSKAFTVFELARYLGIRDLSSALKSLDTLFRNGEEVPMMLGALARHFRQLWR 255 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + + + I ++ N + + + R + + + ++ ++ Sbjct: 256 VRELLD-QGVPQSDIGRQVGINPYFLGEYL--QQARNFPRPELSSIFEELYRCDLASKS 311 >gi|187250621|ref|YP_001875103.1| DNA polymerase III subunit delta [Elusimicrobium minutum Pei191] gi|186970781|gb|ACC97766.1| DNA polymerase III, delta subunit [Elusimicrobium minutum Pei191] Length = 334 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 125/319 (39%), Gaps = 14/319 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ F G D ++ ++ + D F++ +A + + N+ +FS Sbjct: 20 PVYFFTGED---VYRKSAMLERIVKKINADDFNVTKEDAS--KTDFGEILALANTAPVFS 74 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137 ++II + N+ +K L + + + ++++ + ++K + +++K AE +V Sbjct: 75 DRRIIFLNNIDKLKKDAQSALLNYLELPMHSTVLVLFHNDAKKLKTDASVKKAAEAVGTV 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + L I+ S+ EA ++L+ G D A +E++K+S Y Sbjct: 135 IDFA--ELKGPALNAWIKNKFKEKGLSVEPEACELLIDMTGSDLAALESEIEKISLYKNM 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 T + + + + + NA + A+ L L ++L+ Sbjct: 193 QGTATSADILECVGYSREENPFALSNAVLACDRKTALTLVGKLLGEGESPVSILNKISAS 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + +I + S ++I+ ++ + ++ + ++ + +TL+KI Sbjct: 253 VLKMTRIKRLVNA-GYSNQEIVSSAG--LMFWEGRLVSSARMFPSEQTMLKTLNKIIDAD 309 Query: 318 HLARKKKYLEKNIIFQTIL 336 + + ++ + IL Sbjct: 310 IALKTSSGHDPKVLLKGIL 328 >gi|208780598|ref|ZP_03247937.1| DNA polymerase III, delta subunit [Francisella novicida FTG] gi|208743573|gb|EDZ89878.1| DNA polymerase III, delta subunit [Francisella novicida FTG] Length = 325 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ N F KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNYEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + ++ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|169832208|ref|YP_001718190.1| DNA polymerase III subunit delta [Candidatus Desulforudis audaxviator MP104C] gi|169639052|gb|ACA60558.1| DNA polymerase III, delta subunit [Candidatus Desulforudis audaxviator MP104C] Length = 335 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 11/281 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG + L + IN+ K + + F+L ++ E + + Sbjct: 18 PVYLFYGDEVFLHRQAINRLKAALLTGGAESFNLSEIDGEETA--PEEVVRAARLVPVLA 75 Query: 82 KKKIILIENLSTEKK----VLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ N+ + + LE + +++ K+ + + L ++ Sbjct: 76 VCRLVVVRNIPYFDQKPGLGSELLEAYLDAPSPSTCLVLQKAGPVDRRKKLYQLV--TRR 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 AI P + + + ++EA L+++ G EL K+ +Y Sbjct: 134 GRAIDFTPLSAGDVARWVSREAKKSGAVFTREAMDRFLSSVPGGLQGVAVELGKVLTYVG 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E +T + V ++ I ++++A +G+ AI A+ +L + Sbjct: 194 EKERVTVEDVAAVVAPRREETIFQVVDAVGEGRFEAAIDGIRVLTAAGESPLGILAMLAR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 +F+LL + E + K + + L ++ Sbjct: 254 QFRLLLCAPDLAASGLAVPEIAARLQTKP--FVIKKALAQA 292 >gi|254372151|ref|ZP_04987643.1| DNA polymerase III [Francisella tularensis subsp. novicida GA99-3549] gi|151569881|gb|EDN35535.1| DNA polymerase III [Francisella novicida GA99-3549] Length = 325 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ N F KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + ++ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|291519627|emb|CBK74848.1| DNA polymerase III, delta subunit [Butyrivibrio fibrisolvens 16/4] Length = 282 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 2/211 (0%) Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 N++ ++ + F++ ++ILIEN KK+ + L E + I I K Sbjct: 12 NVNQVIDQAETMPFFAEHRVILIENSGFGKKMPEELGEYLSTIPDFTIFIFVEPSADKRG 71 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 L K A+ + I N+ L + L K + K+A + Sbjct: 72 KLYKAAKAAGRDIEI--NMPNETVLTQWVGAMLKDSGKQMKKDAWIQFRDMTDSSMDNMK 129 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 EL KL +Y + IT + V I I ++IN+ + + L L++K Sbjct: 130 RELDKLVTYVGDRSQITIEDVNAICIPQIETKIFDMINSIALKDLPKTMDLYQDMLSAKE 189 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 P +L+ +++F+ L I +KE S Sbjct: 190 PPMRILYMIVRQFRQLAVIRELKEQGESSAS 220 >gi|254373632|ref|ZP_04989116.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548] gi|151571354|gb|EDN37008.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548] Length = 325 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 118/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQF KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + I ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDIFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|326389157|ref|ZP_08210737.1| DNA polymerase III, delta subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326206388|gb|EGD57225.1| DNA polymerase III, delta subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 340 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 108/313 (34%), Gaps = 12/313 (3%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +HK VF F G+D+ + + + + P V + E+++ Sbjct: 4 THKTFAGMMDRALRQARVFYFCGADEAGASDAAARVIERLG-----PAEKVEMTGAELRR 58 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + +E STSLF +II+I E + + +I + ++ + + Sbjct: 59 DPVRLADEARSTSLFGDHRIIIITMSGDEAY--EAISTLIADPVPGWPVLAIAGGATDKS 116 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + K+ L +P + + +++ ++ + + G D +R Sbjct: 117 RIAKLLADRDDALVTVFHPPDLRAVAEMVRTLGDTAGLRLNSGLAEQIALATGLDTRMAR 176 Query: 186 NELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +E++KL Y T + I T I +INA + G+ Sbjct: 177 SEIEKLVLYLDAAPESPRAPTPADLAAIGAATEDDSIAPLINAALGGQTKQVGHELARVT 236 Query: 242 ASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + ALL F ++ L + + ++IS + + + + L + L Sbjct: 237 AQDVNGVALLLAFERRVVTLFQLAGRLGTRTDISAFLEGEIQARRVFFRDKADLAQQLGR 296 Query: 301 WNKNLVRETLHKI 313 W + ++ Sbjct: 297 WRGARLERLAQRL 309 >gi|88705743|ref|ZP_01103453.1| DNA polymerase III, delta [Congregibacter litoralis KT71] gi|88700256|gb|EAQ97365.1| DNA polymerase III, delta [Congregibacter litoralis KT71] Length = 344 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 121/296 (40%), Gaps = 9/296 (3%) Query: 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 H V++ G + L+ E +Q + + + +++ + N + +S Sbjct: 14 RTLHRVYLISGDETLLVQECADQVRAAARRGGCNERHV--MDSSDRSFNWQDLTQDASSM 71 Query: 78 SLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF+++++I I N + L+E + + ++I + +I K +T K + Sbjct: 72 SLFAEQRLIELRIPNGKPGAEGSKALQEYLAQAPETDTLLIVAGKIDKASTNSKWYKAID 131 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + +P N L +E+ SI +E +L + G+ +A+ EL+KL Sbjct: 132 QAGATVQLWPVNADELPRWLEQRARSISLSIDREGLALLAERVEGNLLAAVQELEKLRLL 191 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D ++ + V + ++ +I+ + G+ +++ + + + ALL G Sbjct: 192 A-GDSTVSAKQVAYAVANSARFDSFALIDVALSGRAGDSLRMLHGLRSEGIQPPALLWGL 250 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ +LL + E + + + + ++ ++Q ++R + L Sbjct: 251 VRELRLLRGLLQAVEA-GQAPMQALNGAR--VWKSRQGVIQAAMRRHSVASCEVLL 303 >gi|319651624|ref|ZP_08005751.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2] gi|317396691|gb|EFV77402.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2] Length = 345 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 122/336 (36%), Gaps = 18/336 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ LI E N+ F+L + E + + + + Sbjct: 16 PIYLLYGTEPYLINETKQLLINNVLSEDEADFNLSSYDLEETPIDTA--LEDAETFPFMG 73 Query: 82 KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 ++++I + N + ++ L LE + + +++ S K ++ RK Sbjct: 74 ERRLIFLHNPVFLTSEKSKAKQEHNLSKLEAYMKEPAPYSVVVFSSAAEKLDD--RKKIT 131 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + N+ L I E + I + A +++L G + NE+ K Sbjct: 132 KQLKKTAAILEAKKLNEGELKAWIRERAALNGVQIDESAVELILTLAGTNLFILTNEIDK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ Y + I EQ + ++ + I +++ + KI A+ + L + Sbjct: 192 LALYANDTKRIDEQMAEKMVSRSLEQNIFSLVDKVVHRKIEEALRIYYDLLKQNEEPIKI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+L+ ++ ++I + I P + + +++ + + Sbjct: 252 LSVITGQFRLIYQVK-ELARRGYGQQQIAGYLK--IHPFRVKLAAGQAQMFADEELAAII 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + + +I + + A + N Sbjct: 309 SLLADADYQMKTGGMNKTMLIEMFLFRLQSQALRKN 344 >gi|90416855|ref|ZP_01224784.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2207] gi|90331202|gb|EAS46446.1| DNA polymerase III subunit delta [marine gamma proteobacterium HTCC2207] Length = 348 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 119/313 (38%), Gaps = 13/313 (4%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I + + + K L ++I G D L E + + FS + E Sbjct: 2 KIRAEQLQDQVKKQLL---PIYIISGGDPLLTQEAADSIRTGARAQG---FSERDIFHAE 55 Query: 63 IQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + NE N+ SLFS KKI I I N K L E+ ++++++ + Sbjct: 56 GNFDWNQILNESNALSLFSDKKILEIRIPNGKPGDKGAAALSELCANPNPDNLVLVILPK 115 Query: 121 IKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 ++++ K + + I +P + + I++ L S ++EA QIL + G Sbjct: 116 LERSAQNSKWMKTLEAAGGHIQVWPVDAKQMPRWIQQRLRSANISANQEAVQILADRVEG 175 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E++KL D + + ++ D+ + E ++ + G +A Sbjct: 176 NLLAAVQEIEKLKLLA-TDGTVDGSTMSSVVADSARYNLFEFVDKILIGDGQSAARSLRG 234 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + LL ++ ++L K + S + + + + + +L+ Sbjct: 235 LQNEGTDAIPLLWAITRELRILVKASDLVAGGEHSDWALKNS---GVWEKRLPLFKSALQ 291 Query: 300 IWNKNLVRETLHK 312 +R L + Sbjct: 292 RLRPAHLRMLLRQ 304 >gi|239995377|ref|ZP_04715901.1| putative DNA polymerase III, delta subunit, probably ATP hydrolase [Alteromonas macleodii ATCC 27126] Length = 342 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 136/325 (41%), Gaps = 22/325 (6%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I ++F Q TK L ++ +G + F++I Q + + +++V E Sbjct: 2 QIYPNQFSQDITKAL---RPCYLVFGDEPQQKFDVIEQIRAKAKANGFEERTVLV---AE 55 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSN 119 N + S SLFS ++ I +E L T K + L+E+ + ++++ Sbjct: 56 TGFNWNQLIEATQSMSLFSSQQFIELE-LPTGKPGTEGSKMLQEVAASLNPDILLLVHGP 114 Query: 120 EIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 +I K+ K + + ++ CYP L + + L Q S+S +++ Sbjct: 115 KIGKDVQRGKWFKVLDDLGASVLCYPLEGKQLNAWLNQQLNAHQLSVSASGAKMIADFCE 174 Query: 179 GDRIASRNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A++ E+ KL+ Y + I+++ ++ + D + ++++ + G I + Sbjct: 175 GNMLAAKQEIDKLALLYPHQS--ISDEQIEKAMVDQSRFNVFQLVDVMLSGDSTRCIKML 232 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 + + + ++ +++++ L K+ + ++ IQ + I ++ Q + Sbjct: 233 YRLESEGLEPNIIIWALIREWEQLWKLKLAQQSGAP-----IQWQKFGIWRNRQGFYQSA 287 Query: 298 LRIWN---KNLVRETLHKIDHRIHL 319 L + +++ L + DH Sbjct: 288 LNRLSVAQLEDIQKALTQSDHAFKQ 312 >gi|74318461|ref|YP_316201.1| DNA polymerase III subunit delta [Thiobacillus denitrificans ATCC 25259] gi|74057956|gb|AAZ98396.1| DNA polymerase III, delta subunit [Thiobacillus denitrificans ATCC 25259] Length = 344 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 99/281 (35%), Gaps = 8/281 (2%) Query: 74 INSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++ SLF+++++ I I + LE K + + ++ + + + Sbjct: 67 ADNLSLFAERRLTEIRIPSGKPGVDGAKALEAYAAKLPADTLTLVSLPGLDRKTQQSRWF 126 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 S + + P + L I+ L + A + L + G+ +A++ E+ K Sbjct: 127 TALAKSAVVVEARPVERAQLPAWIDRRLARQGLHAERAALEFLADQVEGNLLAAQQEIDK 186 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ L +T V+ + D L + + +A G +A S A+ Sbjct: 187 LAL-LLPPGAVTLADVEHAVVDVSRLEADALQDALYAGDAARFAQVAKDLQDSGEAVPAI 245 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L QLL ++ + + + S +++ + ++ +L+ + + L Sbjct: 246 LWQVASAVQLLLRLKL-AQSNGESLPALMRTLW-GRDKQRAPQIERALKRLSMTQIEAAL 303 Query: 311 HKIDHRIHLARKKKYLEKN--IIFQTILYIAQTACKNNNFY 349 + A+ + + + + +A + N Sbjct: 304 GALAGVDRQAKGLDRIGDPWDSLLRAAMTLAGGERRENRTR 344 >gi|182413223|ref|YP_001818289.1| DNA polymerase III, delta subunit [Opitutus terrae PB90-1] gi|177840437|gb|ACB74689.1| DNA polymerase III, delta subunit [Opitutus terrae PB90-1] Length = 389 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 18/277 (6%) Query: 13 STKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNI 67 + + G D L+ L + ++ D FS VL+ E+ I Sbjct: 21 PNRAMPAGRNFTFICGPDDFLVGRLGAEKFAALAAEVPDEFSREVLSGFANNVGEVASAI 80 Query: 68 STFWNEINSTSLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIII 115 + F + + + S+F ++++ +++ + K+L+ L+EI+ K + ++ Sbjct: 81 NRFRDSVQTISMFGGRRVVWLKDVNFLADSVTGRAESTLKLLEDLQEILTKIDPAETAVL 140 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I + + + K EK ++ + L ++ +I+ +A ++LL Sbjct: 141 ITAAPVDRRRAFPKWCEKNADFTLVAADAGDGAALEGVVLAEAKAVGATITPDAVRLLLV 200 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 +G + E+ KL++Y E I E HV ++ + E A G + + Sbjct: 201 RVGANTRLLVEEVHKLANYAGEGQPIEEAHVGELTPNVAEGDFFEAAEAFFSGDLKWTLA 260 Query: 236 LADF-FLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + F A + +L + ++L ++ + + Sbjct: 261 ALERQFFAEPNAARPILAALQNRNRILLQVRALIDAG 297 >gi|332969971|gb|EGK08971.1| DNA-directed DNA polymerase III delta subunit [Kingella kingae ATCC 23330] Length = 336 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 103/265 (38%), Gaps = 6/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + +++ E NS SLF+ Sbjct: 19 PLYLIHGEEELLRLEAVDAIRAAAKQQQYLNREVYTVDSANFDWQP--LLAEANSVSLFA 76 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +K+ I I N K+ D L+++ + + ++++ ++ K T K + + Sbjct: 77 SQKLLEIHIPNGKVGKQGGDALQQLAQQLPADTVVLLVLPKLDKMQTQSKWFTALAKNGM 136 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + P L I E L I +A Q+ + G+ +A++ E++KL + Sbjct: 137 VLEAKPIVGNSLPAWIRERLAAQGLDIDADALQLFTERVEGNLLAAKQEIEKLGLLYAQG 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +++ V+ I + + ++ +A + G + L + A L + Sbjct: 197 HVLSLDDVQAAIANVARFDVFDLSSAWLGGDTKRVVRLLEGLEAEGDEPVLALWSVAEDI 256 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + + ++ + +++ + Sbjct: 257 RTVIRLSAAL-KQGKTAQQVRNELR 280 >gi|323702390|ref|ZP_08114055.1| DNA polymerase III, delta subunit [Desulfotomaculum nigrificans DSM 574] gi|323532696|gb|EGB22570.1| DNA polymerase III, delta subunit [Desulfotomaculum nigrificans DSM 574] Length = 348 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 52/341 (15%), Positives = 125/341 (36%), Gaps = 33/341 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG ++ L + + +FK+++ D F+L VL+ E + ++T + + + Sbjct: 18 PVYLFYGEEEYLKEKAVAKFKEHLLPQAAD-FNLDVLDGEETE--LTTVVSLAENLPFMA 74 Query: 82 KKKIILIENLSTEKKVLD-----------------CLEEIIIKN-ICNHIIIIKSNEIKK 123 ++++++++N K L + + +I + + + + Sbjct: 75 ERRLVIVKNAPWFKGKAKGSADQSSGEDKSAGKEGTLLNYLNQPAPTTCLIFVTGDSVDR 134 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRI 182 L K E + + + + K I A + L+ G + Sbjct: 135 RKKLFKAVESAGKAVDFKALK--ANEMAAWVTNQVKARGKKIDAMAVRALVEANGKLGLL 192 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 NE++KL +Y E I+ V+ + I +++ + G AI LA Sbjct: 193 NLANEVEKLITYVGEAKDISLTDVQQVGVTNLEQNIFTVVDEAVSGNTAQAITGIKELLA 252 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLR 299 K +L ++F ++ I E + ++ K + +++ + R Sbjct: 253 LKEQPVKILAMLARQF----RLAIQVEALVRTGCPEREVAGKLGLHDFVVRKAL--AQAR 306 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + + L ++ +K + I T++ ++Q Sbjct: 307 KSSTAKLEWALERLAAMDAEIKKGQQDFLPAIANTLIRLSQ 347 >gi|89257146|ref|YP_514508.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica LVS] gi|115315485|ref|YP_764208.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica OSU18] gi|156503371|ref|YP_001429436.1| DNA polymerase III, subunit delta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167011053|ref|ZP_02275984.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254368371|ref|ZP_04984389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica 257] gi|290954108|ref|ZP_06558729.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312493|ref|ZP_06803261.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica URFT1] gi|89144977|emb|CAJ80337.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica LVS] gi|115130384|gb|ABI83571.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134254179|gb|EBA53273.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica 257] gi|156253974|gb|ABU62480.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 325 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|42522977|ref|NP_968357.1| DNA polymerase III, delta subunit [Bdellovibrio bacteriovorus HD100] gi|39574173|emb|CAE79350.1| DNA polymerase III, delta subunit [Bdellovibrio bacteriovorus HD100] Length = 336 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/327 (14%), Positives = 122/327 (37%), Gaps = 13/327 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I++ KF + K + ++ +G + L+ + + +FK + F+ + A Sbjct: 1 MALIDAQKFYRDLEKGQ--TAPMYFLFGEEPYLLNQSVERFKYAVLTEGAVDFNYSLFYA 58 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSN 119 + ++ + + + + + +++++++++ K LE ++ + + + +I ++ Sbjct: 59 SD--ADVVSVRDAVETLPMMAQRRLVILKEAQELTDKEWAELEPLLESPVDSTVFVILAS 116 Query: 120 EIKKNNT-LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + K +R + +K V Y + ++ I +SL +IS +A +L +G Sbjct: 117 RVDKRKKQIRLLLDKADCVEFKKPYENQIPSWINYIAQSL---GLTISNDAILLLHKLVG 173 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 EL+KL + + I V + + + + A + A+ L Sbjct: 174 HHLTEIEGELKKLGEFV-GERRIEVADVAQAVSRSKEENVFDFTKAIGENDRVKALELLV 232 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 L ++ + ++L + E + + L ++ Sbjct: 233 HLLDQGQNEIGIVSLVARHVRILLTLKRGMEEGLHGAKLAHFAQVPPYFLE--SYLDQA- 289 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKY 325 R+W + +TL + + Sbjct: 290 RLWTAKKLEQTLVVLSETDKALKSSPL 316 >gi|153875283|ref|ZP_02003154.1| DNA polymerase III, delta [Beggiatoa sp. PS] gi|152068253|gb|EDN66846.1| DNA polymerase III, delta [Beggiatoa sp. PS] Length = 365 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 105/285 (36%), Gaps = 10/285 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G D E + + + H F+ V+ A+E + S+ NS SLF+ Sbjct: 46 PIYLLTGDDPLQQMECADTLR---NFARHQGFTERVVLAVETGFDWSSLEQYANSLSLFA 102 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138 K++ I + N S L +++++I ++++ + K + + Sbjct: 103 NKRLLEIRLGNKSPGNDGTKALIAYSNNPPADNVLLITADKLDASKQKTKWFTTLDNKGI 162 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I +P L I + + + EA ++ G +A E++KL Sbjct: 163 VIQIWPLKISELPGWIAQRMKKYGLQAAPEAINLIAERSEGHLLACAQEIEKLRL-IYGT 221 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I V + + D+ + + ++ + G I ++ A + + ++ Sbjct: 222 GQINTAQVLEAVADSARFEVFDWVDTVLIGNIQRSVRQLQGLQAEGVEPILVAWALTKEI 281 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++L +I + ++ + I ++ +++ + K Sbjct: 282 RILCQITYAL-KAGQRPQQAFKTFR--IWSTRQTAFSNAIKRYPK 323 >gi|56707362|ref|YP_169258.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110669832|ref|YP_666389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis FSC198] gi|224456430|ref|ZP_03664903.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370934|ref|ZP_04986939.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874196|ref|ZP_05246906.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|56603854|emb|CAG44830.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320165|emb|CAL08213.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151569177|gb|EDN34831.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840195|gb|EET18631.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|282158494|gb|ADA77885.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis NE061598] Length = 325 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|254368393|ref|ZP_04984410.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|157121287|gb|EDO65488.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] Length = 325 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|331004485|ref|ZP_08327956.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411052|gb|EGG90473.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 341 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 117/313 (37%), Gaps = 12/313 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G D+ L + K I D + I +I + N+ FS+ Sbjct: 35 IYVLSGDDEFLKNSYKKRLKSAIVGD--DQMNFAYFEGKGI--DIDAIIDFSNTLPFFSE 90 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + ILIE+ K + + I + II ++ K + L K + + ++ Sbjct: 91 YRCILIEDSQWFKAGNEKFFDHISDKPDSTKIIFVEKDLDKRSKLYKKVKDIGYIAELNH 150 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 D + L + + K I+ +A +G D ++EL KL S+ L+ +I Sbjct: 151 PTDEE--LKNWAGNIINRAGKKITVSNMDFFIARVGNDMERIKSELDKLLSFTLDKDIIE 208 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 E+ ++ I + I E++ KI A+ + + +A K P ++ ++F L Sbjct: 209 EEDIRAITSISLTNRIFELVKMITNNKIKEALDIYEDLVALKEPPLKIIILITRQFNQLL 268 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHL 319 +I + + +I + + P L R ++ L+ + ++ I Sbjct: 269 QIK-ELTAAGFGEKDVISNMK--LNPYVAKNLIRQSRGFDIALLLSYVKNAIDLEEAIKQ 325 Query: 320 ARKKKYLEKNIIF 332 L ++ Sbjct: 326 GNINDKLALELLM 338 >gi|325107356|ref|YP_004268424.1| DNA polymerase III subunit delta [Planctomyces brasiliensis DSM 5305] gi|324967624|gb|ADY58402.1| DNA polymerase III, delta subunit [Planctomyces brasiliensis DSM 5305] Length = 335 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 109/326 (33%), Gaps = 11/326 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSL-VVLNALEIQKNISTFWNEINSTSLF 80 V + G ++ L + ++ + P + L Q +E+ + S+F Sbjct: 17 PVVVLSGGERFLKQRVQSRLLSALFPDEEKPAEMATQLEGK--QAEWRAVLDELKTISMF 74 Query: 81 SKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ + I LE +++ ++++ KN L K + LA Sbjct: 75 GGQRCVCIGTADDFVSSHRAALENYVLQPSKKSLLLLDVKSWPKNTKLAKKV--AKTGLA 132 Query: 140 ISCYPDNKIHLMD-LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I C L ++ + I + + L+ G EL KL+SY E Sbjct: 133 IECSELKGAQLAGWVVGHAKQQYDVKIPRGVAEGLIDLAGTSLGLLDQELDKLASYVGEK 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT + V+ ++ + +INA G + +A++ + + S LL G + Sbjct: 193 KAITIEDVQSVVGGWRLETTWAMINAVRDGFMDDALIEMNKLITSGEAPQKLLGGINFVY 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L + + + E + P + LR + + Sbjct: 253 RKLT---AAVRTAGPNKPLNVALKEAGVFPRDVPAAESYLRKLGRPKAERIPQMLMQADL 309 Query: 319 LARKKKYLEKNIIFQTIL-YIAQTAC 343 + L ++ + +L +A A Sbjct: 310 GMKGDSSLPPRVLLERLLVQLAPGAR 335 >gi|220935445|ref|YP_002514344.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7] gi|219996755|gb|ACL73357.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7] Length = 344 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F G + + E + + + + + + S +S SLF+ Sbjct: 18 PVYLFAGDEPLQLMEAADAVRAAARTRGYTEREVFTADRSF---DWSALTAASDSLSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +++I+ + + LE ++ + ++++ + +++K+ K + + Sbjct: 75 ERRILELRLPTGKPGTQGAKALEAYCLRLPEDTLLLVHAGKLEKSAANSKWVKSLEQAGV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I +P + I L + A ++L + G+ +A+ E++KL+ + Sbjct: 135 MIQVWPLSLAETAGWIARRLRSRGLVPDEPAVRLLAERVEGNLLAAAQEVEKLAL-LRGE 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + V + + D I ++ +A + G A+ + + + + +L ++ Sbjct: 194 GSLDADGVLEAVSDAARYTIYDLADAALAGDSARAVHVLNGLRGEGVDAVLILWALSREV 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + L I E + + K++ + +++++L R L Sbjct: 254 RSLTDIAEQMEAGTPAA-----QAMKSVWAKRAPLVKKALARHRAPAWRALL 300 >gi|149377500|ref|ZP_01895241.1| DNA polymerase III, delta subunit [Marinobacter algicola DG893] gi|149358192|gb|EDM46673.1| DNA polymerase III, delta subunit [Marinobacter algicola DG893] Length = 335 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 116/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L+ E +Q +K + + Q + + E + SLF+ Sbjct: 18 PVYLVSGDEPLLVQECCDQIRKIAREAGYQDRVTFHADQ---QLDWNRVGEEFGALSLFA 74 Query: 82 KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVL 138 +K+ I I +L T K LE ++ + ++++ S + T RK E + Sbjct: 75 EKRRIEI-HLPTGKLGDGRAVLESVLQNPPDDIVLLLISARLDAAETRRKWYKELQDKGV 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + +P + +++ S+++ A IL L G+ +A+ EL +L+ Sbjct: 134 HVPVWPIDTDKFPGWLQQRARNHGLSLTRGALDILAERLEGNLLAASQELDRLAL-LGTG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I E V+ + D+ E++ + G+ +A + LL + Sbjct: 193 ATIDEDTVEQAVQDSSRFNGFELVTELLAGRAAHARKIVGVLQQEGENPLGLLAVLTRDL 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L +++I + + ++ + P + ++++ R N++ + L Sbjct: 253 NLTMELNIAAAKRENTAGFL---KKRGVFQPQRARAVEQAARRLNRHQLNTALELCSTTD 309 Query: 318 HLAR 321 A+ Sbjct: 310 RAAK 313 >gi|77166121|ref|YP_344646.1| DNA polymerase III, delta subunit [Nitrosococcus oceani ATCC 19707] gi|254435580|ref|ZP_05049087.1| DNA polymerase III, delta subunit [Nitrosococcus oceani AFC27] gi|76884435|gb|ABA59116.1| DNA polymerase III, delta subunit [Nitrosococcus oceani ATCC 19707] gi|207088691|gb|EDZ65963.1| DNA polymerase III, delta subunit [Nitrosococcus oceani AFC27] Length = 344 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 120/323 (37%), Gaps = 13/323 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + LI E + + + ++ + + + SLF+ Sbjct: 19 PVYLLFGDEPLLIEEGADLIRSRVQSQGFYEREVMHIERGF---DWAQLQWATRGLSLFA 75 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 ++I + + + L + +++I S ++++ + + + Sbjct: 76 AHRLIELRLPTNAVSEAGAKVLRAYGENPSPDTLLLIISGKLERRHQGTRWFSALEQAGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + + L IE + S ++EA +L+ L G+ +A E+ +L+ + Sbjct: 136 VVQVFKVDISSLSRWIERRMHSRNLSPTQEAVTVLVERLEGNLLACAQEIDRLAL-LFPE 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I V++++ D + ++ + + G + + A + ++ + Sbjct: 195 ETIDVSRVEEVVADNARYDVFRLMESALAGDVVQIARIWRGLQAEGVEPVIVVGALAWEL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L ++ + ++ +++ + ++ + +++L + + L ++ Sbjct: 255 RRLARM-ARICAQGMPVDQALREQR--VWERRKALSKQALSRHSAHRWLLFLRQLGEIDR 311 Query: 319 LAR--KKKYLEKNIIFQTILYIA 339 + + + + I+ Q L IA Sbjct: 312 MVKGAARGRPWEAIL-QLCLAIA 333 >gi|328675340|gb|AEB28015.1| DNA polymerase III delta subunit [Francisella cf. novicida 3523] Length = 325 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 26/261 (9%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQF KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQVLVDKLINDDDNVYLLVFSG-MKKQNTTA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I++++ + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPSLDNSINIINYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + ++ LS + E ++ + + + ++ A + A+ + + L Sbjct: 177 KQIIKLLS--RQGSQIFDENSIRPFLHEHASFDVFDLSEAILSQHKSKALKILNSILNEN 234 Query: 245 MPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 235 DKPPLVLWALKRELRILSQLK 255 >gi|224476694|ref|YP_002634300.1| DNA polymerase III subunit delta [Staphylococcus carnosus subsp. carnosus TM300] gi|222421301|emb|CAL28115.1| putative DNA-binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 324 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 121/305 (39%), Gaps = 21/305 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG LI + + + D F+ V + E + I+ EI + FS Sbjct: 4 NIITIYGEVPELIEKKSKEIVDSYLQEPKDDFNFVSFDLAETE--INICIEEILTLPFFS 61 Query: 82 KKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130 KK+++I+N + EK D L E I K +++ + ++ + L K Sbjct: 62 DKKVVVIKNAYLFTGEKGPKDLNQNTDQLLEFIQKYDGQTLVVFEVYNPKLDERKKLVKT 121 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K T ++ I +++ + + ++ L K I ++A + + G + + EL+K Sbjct: 122 LKKETKLIKIEQMSEDE--IKNWVKNELNQQYKDIKQDALNLFIELTGINFNLIKQELEK 179 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + + + I +Q V+ I+ + + + + +G+ AI L + + K L Sbjct: 180 MVLFLGDRPTIVKQDVETIVNRSLEQNVFLLTDYIQKGQKSEAINLVNDLIIMKEEPIKL 239 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L F L I S ++I + + ++ +LR + +R+ + Sbjct: 240 LALITSNF-RLYYQCKILANKGYSQQQIAKTVGAHPF-----RVKLALRTSRQYELRQLM 293 Query: 311 HKIDH 315 I+ Sbjct: 294 SIINA 298 >gi|332993376|gb|AEF03431.1| putative DNA polymerase III subunit delta [Alteromonas sp. SN2] Length = 321 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 117/300 (39%), Gaps = 12/300 (4%) Query: 27 YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86 +G + FE+I Q + D +++V + + S SLFS ++ I Sbjct: 2 FGDEPQQKFEVIEQIRTTAKANGFDERTVLVADTGFSW---NQLLEATQSMSLFSNQQFI 58 Query: 87 LIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143 +E + L+E+ + ++++ +I K+ K + +++ CY Sbjct: 59 ELELPTGKPGAEGSKMLQEVAKGLTQDTLLLVHGPKIGKDVQRGKWFKVLDDMGVSVLCY 118 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 P L I + Q +I+ +++ G+ +A++ E+ KL+ ++E Sbjct: 119 PLEGRQLSAWISNQVKQHQLTINAAGMKMIADFCEGNLLAAKQEIDKLAL-LYPQQSVSE 177 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 ++ + D + ++++ + G + + + + + ++ ++++++L K Sbjct: 178 AQIERAMVDQSRYNVFQLVDVMLSGDANRCVKMLYRLESEGLEPNIIIWALIREWEVLWK 237 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + S + + IQ + I ++ Q +L + + + + ++ Sbjct: 238 LK-----SATANGEAIQWQKFGIWRNRQGFYQSALNRLSIEQLLQIQDALTQADLAFKQN 292 >gi|297529321|ref|YP_003670596.1| DNA polymerase III subunit delta [Geobacillus sp. C56-T3] gi|297252573|gb|ADI26019.1| DNA polymerase III, delta subunit [Geobacillus sp. C56-T3] Length = 348 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 127/341 (37%), Gaps = 20/341 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ L+ E + ++L V + E I E + F Sbjct: 16 PLYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEET--PIEAALEEAETVPFFG 73 Query: 82 KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 ++++ILI++ EK++ L LE + I++ + ++ + + K+A Sbjct: 74 ERRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLA 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ + V+ + + L + + S EA +LL G A NE+ KL Sbjct: 134 KEQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKL 191 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + I V+ ++ T + ++ + I A+ L + +L Sbjct: 192 ALFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKIL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 F+LL ++ + + I K + L ++ R + + E ++ Sbjct: 252 ALLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAIN 308 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILY--IAQTACKNNNFYK 350 ++ + K +++ + + +L A+ A + + Sbjct: 309 ELADADYEV-KSGAVDRRLAVELLLMRWSARPAQAGRHGRR 348 >gi|261418469|ref|YP_003252151.1| DNA polymerase III subunit delta [Geobacillus sp. Y412MC61] gi|319767570|ref|YP_004133071.1| DNA polymerase III subunit delta [Geobacillus sp. Y412MC52] gi|261374926|gb|ACX77669.1| DNA polymerase III, delta subunit [Geobacillus sp. Y412MC61] gi|317112436|gb|ADU94928.1| DNA polymerase III, delta subunit [Geobacillus sp. Y412MC52] Length = 348 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 127/341 (37%), Gaps = 20/341 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ L+ E + ++L V + E I E + F Sbjct: 16 PLYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEET--PIEAALEEAETVPFFG 73 Query: 82 KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 ++++ILI++ EK++ L LE + I++ + ++ + + K+A Sbjct: 74 ERRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLA 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ + V+ + + L + + S EA +LL G A NE+ KL Sbjct: 134 KEQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKL 191 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + I V+ ++ T + ++ + I A+ L + +L Sbjct: 192 ALFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKIL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 F+LL ++ + + I K + L ++ R + + E ++ Sbjct: 252 ALLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAIN 308 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYI--AQTACKNNNFYK 350 ++ + K +++ + + +L A+ A + + Sbjct: 309 ELADADYEV-KSGAVDRRLAVELLLMRWGARPAQAGRHGRR 348 >gi|170017694|ref|YP_001728613.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20] gi|169804551|gb|ACA83169.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20] Length = 333 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 125/307 (40%), Gaps = 20/307 (6%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + +N L++F + G + LI Q K I + + + Q+++S Sbjct: 6 LYQQIQNNALANFYVVI-GDEDILIQ-RAKQAFKAIIKSDDREMNFSQFDLS--QQDLSE 61 Query: 70 FWNEINSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 ++ S F +++ILI+N + D L ++I + +++++ N++K Sbjct: 62 VIDDAMSLPFFGDRRVILIQNPEFLTAKGKISETNQDQLSKLIESPVADNVVVFLINDLK 121 Query: 123 KNNTLRKIAEKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + RK K I N+ I + L ++S +A Q L+ Sbjct: 122 IDK--RKKITKQVLKHAEQIELAALNESAAKQAITQQLQQQNYTMSPDALQELVVRTNAQ 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 NEL KL +Y + D IT V ++ T + ++++A + KI A+++ Sbjct: 180 YTVMVNELPKLLAYAVYDKKITLDAVNALVPKTLTANVFDLVDAVMTKKIKQALIIYRAL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + P+ + +F+LL I+ ++ I + I P + + ++ L Sbjct: 240 LQNGEPALRVNAVLTGQFRLL-----IQVAGLKGSDQEISQQLGGIHPYRIKLARKMLGK 294 Query: 301 WNKNLVR 307 +N +R Sbjct: 295 YNLPALR 301 >gi|254787752|ref|YP_003075181.1| DNA polymerase III subunit delta [Teredinibacter turnerae T7901] gi|237685727|gb|ACR12991.1| DNA polymerase III, delta subunit [Teredinibacter turnerae T7901] Length = 349 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 17/326 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA + + + V++ G + L E + ++ L +A Sbjct: 1 MAKLRADQL---PGALKKRLAPVYLVTGDEPLLSQESCDAIRQTAKKQGFIERELYHTDA 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 +N N+ SLF+ KKII I N + E + ++++ S Sbjct: 58 GFSWDE---LYNATNAMSLFADKKIIEIRIHNGKPGDAGSKAILEFCANINDDTLLLLVS 114 Query: 119 NEIKKNN---TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 +I + K ++ V+ I +P L ++ L + EA IL A Sbjct: 115 PKIDSRSQNSKWYKAIDQAGEVITI--WPVGPAQLPRWVDTRLKQAGLNADSEAIDILCA 172 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 G+ +A+ E++KL + I Q + + + D+ +++ I G A Sbjct: 173 KTEGNLLAAVQEVEKLKLVAEGN-FIDAQMMANAVMDSARYDTFGMVDKAIFGDSRAAAE 231 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 A + ALL + + L I + + + ++ + + Sbjct: 232 SLQGLRAEGTEALALLWALTRDIRTLTNIKEGLQAGENFD---LAAKRNGVWDKRKPLFK 288 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321 ++++ + L K +A+ Sbjct: 289 QAIQRHKLPQLYGLLRKTALADRIAK 314 >gi|291458006|ref|ZP_06597396.1| DNA polymerase III, delta subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419338|gb|EFE93057.1| DNA polymerase III, delta subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 335 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 110/315 (34%), Gaps = 14/315 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++ YG + L F++ + + E + + + + Sbjct: 28 RPVYLLYGEESYLKTSYKRSFREAFGGKDS-----MNYSYFEGNVELDELLSVLETLPFL 82 Query: 81 SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ +++++E+ + L + K + +++ E+ K N L K+ ++ Sbjct: 83 AEGRLVILEDSGFCRHSAPERLCAYLPKMPKSSHLMLIEKEVDKRNRLYKLLDQGGLCCE 142 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++ ++ L + L K I A +LL G ELQKLS+Y E Sbjct: 143 MA--EQDERALSAWVARILKKEGKRIRPAAMALLLERTGKSMEHILTELQKLSAYLGERE 200 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 L+ E+ + I+ + E+++ +G A+ LA + +L F + F Sbjct: 201 LVEEEDLDAILSQNAEDRVFEMLSELGRGNRAGALCCYRELLAREEAPMKILALFRRSFN 260 Query: 260 LLEKIHIIKECSNISFEKI-IQKTEKNIIPMKRNILQESLRIWNKNLVRETLH--KIDHR 316 L E E I + I ++ ++ ++L + D Sbjct: 261 QLLLARECVEKGRNERESAGILGLKPYI---AGKLMAQARHSTTQDLKERLARCLRYDAA 317 Query: 317 IHLARKKKYLEKNII 331 I + + ++ Sbjct: 318 IKSGKLSDRMAVELL 332 >gi|320102809|ref|YP_004178400.1| DNA polymerase III subunit delta [Isosphaera pallida ATCC 43644] gi|319750091|gb|ADV61851.1| DNA polymerase III, delta subunit [Isosphaera pallida ATCC 43644] Length = 382 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 121/326 (37%), Gaps = 16/326 (4%) Query: 25 IFYGSDKGLIFELINQFKKNI------SITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + +G + L ++ + +L L+ ++ ++E + Sbjct: 27 VIFGDEPFLKSRVLAALLDRALGPNHRAEDADADMALCRLDGEAASAQVARVFDEARTLP 86 Query: 79 LFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 +K++++++E K LE+ + ++I+ N TL K+ EK Sbjct: 87 FLAKRRVVVVEEADEFVIKARKELEKFVQYPPPTGVLILSLKSFPSNTTLAKLTEK--IA 144 Query: 138 LAISCYPDNKIHLMDLIEESLLIG-QKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 LA+ C + + L+ + + +A ++++ +G + NEL KL++Y Sbjct: 145 LAVDCRAPKEAEMPGLLIQLARKDHGLKLESDAARLMVELVGPELGLMVNELGKLAAYVG 204 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT V ++ VL I ++I+ GK A+ D LA+ P L+ Sbjct: 205 TAQTITRDDVAAMVGSGRVLEIWKVIDLATTGKAGEALDALDRLLAAGEPPIKLMAAMTT 264 Query: 257 KFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 L+ H + ++ E+ + +++ + Q + + V + Sbjct: 265 TL--LKVAHAGRLRVARMTPEQAARSAGIPPFGVEKMVAQHA--HLGPSRVARLSSLLLQ 320 Query: 316 RIHLAR-KKKYLEKNIIFQTILYIAQ 340 + + I+ + I+ +A+ Sbjct: 321 TDLDLKGFSNLPPRTILERLIVELAR 346 >gi|229827348|ref|ZP_04453417.1| hypothetical protein GCWU000182_02736 [Abiotrophia defectiva ATCC 49176] gi|229788286|gb|EEP24400.1| hypothetical protein GCWU000182_02736 [Abiotrophia defectiva ATCC 49176] Length = 298 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 8/255 (3%) Query: 43 KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLE 102 KN I D +L + +I+ + FS + IL+EN + Sbjct: 10 KNAVIGSGDKMNLNTFSGK--ITDINNIIEPAETLPFFSDYRCILVENSGLF-SSANEFS 66 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 E I K + +II N++ K L K K + +N L++ I + + Sbjct: 67 EYIAKIPESTVIIFAENDVDKRTKLYKTVNKTGCAVEFEIQKEN--DLINTIIKKFAKDK 124 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 +I E + + +G +E KL SY E +T++ + + I +I+ Sbjct: 125 ITIDYELAKYFVNRIGTSMDELYSEADKLISYVYEKRTVTKEDIDTVCERQLSDKIFDIM 184 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 + + NAI + +L F L I + E Sbjct: 185 DYMGKKDRENAIGFYLDLTGLQESPVKILALINTHFTRLYNIKQLM-AEGKQGEIASLLK 243 Query: 283 EKNIIPMKRNILQES 297 + ++++ Sbjct: 244 IPPFFV--KKYVEQA 256 >gi|134302695|ref|YP_001122663.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134050472|gb|ABO47543.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 325 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 120/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 S +L ++ ++L ++ Sbjct: 234 NDKSPLVLWALKRELRILSQLK 255 >gi|149192419|ref|ZP_01870617.1| DNA polymerase III subunit delta [Vibrio shilonii AK1] gi|148833748|gb|EDL50787.1| DNA polymerase III subunit delta [Vibrio shilonii AK1] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 124/326 (38%), Gaps = 20/326 (6%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSL-VVLNALEIQKNISTFWNEINS 76 H ++ +G++ + E LI + + + H FS+ L+ ++ ++ + Sbjct: 17 HGCYLVFGNEPLFVQESRDLIIRHARQLGFEEHHRFSVNSSLDWNDV-------YDCTQA 69 Query: 77 TSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLFS K+II + + L EI + ++II ++ + K K Sbjct: 70 LSLFSSKQIIELSIPESGINAAIAKQLLEISSHLHEDIVVIITGTKLTRAQESAKWF-KA 128 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + +SC + HL + EA Q+L G+ A L+KLS Sbjct: 129 LNGCLVSCAAPDVKHLPQWVMRRCNASGLKPDGEAIQLLCQWHEGNLFALSQSLEKLSL- 187 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D + V++ + + + I+A ++GK A + A + + LL Sbjct: 188 LYPDGQLNLLRVQESLSRHNHFTVFHWIDAILEGKPKRANRILLQLEAEGVEAVILLRSI 247 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ Q L K+ + S+++ ++ + K+ + +L+ +++ + + Sbjct: 248 QKELQQLIKMQQMLTQSSLN--QVFDSFR--VWQNKKPLYSAALQRLTAIRLKQAMQLLA 303 Query: 315 HRIHLARKKKYLEK-NIIFQTILYIA 339 + + L + Q L ++ Sbjct: 304 SIEVQVKTQYELSPWPFLHQLTLNLS 329 >gi|167630488|ref|YP_001680987.1| DNA polymerase iii, delta subunit, putative [Heliobacterium modesticaldum Ice1] gi|167593228|gb|ABZ84976.1| DNA polymerase iii, delta subunit, putative [Heliobacterium modesticaldum Ice1] Length = 367 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/357 (12%), Positives = 120/357 (33%), Gaps = 39/357 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L+ E++ + + F++ L + I+ + + Sbjct: 17 PVYLIYGDEPYLMSEILEELMARFAGQPGGEFNMDRLEGDVTAEMIA---EAAQTPPFMA 73 Query: 82 KKKIILIENLSTEKKV---------------------------LDCLEEIIIKNICNHII 114 +++++++ + + L + + + Sbjct: 74 ERRLVIVRDTPLLRAARGSDGADGEGASSGKGKGASRFKTMEPEAPLLQYLADPSRTTCL 133 Query: 115 IIKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 + S + K L K EK + I ++ L + + + EA +L Sbjct: 134 VFFSPSGVDKRKRLYKAIEKAGHAVEIKKLSES--DLRNWAAQQAKAMKLPFEAEALNLL 191 Query: 174 LANLGGDRIASRNELQKLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 + G D EL+KL ++ E +T + V+ ++ T + I +A G++ Sbjct: 192 IDRAGDDLGRLVLELEKLRNFLGEPSPTRRVTPERVRRLVPATPEDNVFAIADALGDGQV 251 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 NA+ + + + LL ++ + L I S + ++ + ++ Sbjct: 252 DNALRITCDLVRNGQHPIRLLFLIIRHVRQLLHIK-ELTASGLRKTDWAREMKLPAGVVR 310 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + L+ + + +R H++ + + + +L A ++N Sbjct: 311 K--LESQADRFPREELRRLYHRLTAADVAIKTGAGEARQTLELCLLAFAGEGIQSNK 365 >gi|300113164|ref|YP_003759739.1| DNA polymerase III subunit delta [Nitrosococcus watsonii C-113] gi|299539101|gb|ADJ27418.1| DNA polymerase III, delta subunit [Nitrosococcus watsonii C-113] Length = 344 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 124/324 (38%), Gaps = 15/324 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + LI E + + ++ + + + SLF+ Sbjct: 19 PVYLLFGDEPLLIEEGADLIRSRAQSQGFYEREVMHIERGF---DWAQLQWATKGLSLFA 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I + + + L + +++I S+++++ + + + + + Sbjct: 76 ARRLIELRLPKNAVSEAGTKVLRTYGENPSPDTLLLIISDKLERRHQVSRWFSALEQTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + + L IE L S+++EA +L+ L G+ +A E+ +L+ Sbjct: 136 VVQIFKVDISSLSRWIEHRLRSRSLSLTQEAVAVLVERLEGNLLACAQEIDRLAL-LFPK 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I V++I+ D + ++ + + G + + A + ++ + Sbjct: 195 ETIDASRVEEIVADNARYDVFRLMESALAGDVVQIARIWRGLQAEGVEPVIVVGALAWEL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKIDH 315 + L ++ ++ +++ + ++ + +++L + + + L KID Sbjct: 255 RRLARM-ARACAQGKPVDQTLREQR--VWERRKIMTKKALSRHSVHRWLLFLQQLGKIDC 311 Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339 + A + + I+ Q L IA Sbjct: 312 MVKGA-VRGRPWEAIL-QLCLAIA 333 >gi|169829290|ref|YP_001699448.1| hypothetical protein Bsph_3840 [Lysinibacillus sphaericus C3-41] gi|168993778|gb|ACA41318.1| Hypothetical yqeN protein [Lysinibacillus sphaericus C3-41] Length = 343 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 128/329 (38%), Gaps = 26/329 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I E I + K+ + + L+ + + +E ++ FS Sbjct: 23 PVYLLVGEESYFIDETIKRIKEAMGPEEELEMNTFDLDEVPVDA----VMDEADTIPFFS 78 Query: 82 KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++K+I+ +N S K + LE + + + + K + RK Sbjct: 79 EQKLIIAKNASFLKAAEKGKEKIDHDVKRLEAWLSNPSDFSVTVFIAPYEKLDE--RKKV 136 Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K L I + L I+ + SI+++A ++L+ +G + + + E+ Sbjct: 137 TKMMKEHALLIEAATPKEQDLAVWIQSIVKGQGNSITQDAIELLVTMVGANMLQLQMEID 196 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ Y E IT V+D++ T +++NA + +A+ + L K Sbjct: 197 KLTLYLGEGGEITVSLVEDLVAKTLEQDAFKMLNAYLANDSVSALSIYHDLLRQKQEPIM 256 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L+ + + + + ++I + + I P + ++ E ++ + Sbjct: 257 LVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMTEQRNRPSEESLLRA 313 Query: 310 LHKIDHRIHLAR-----KKKYLEKNIIFQ 333 L+++ + +++YLE ++ Q Sbjct: 314 LYQLAEVDLQLKSTGGNRERYLELFLLRQ 342 >gi|187932239|ref|YP_001892224.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187713148|gb|ACD31445.1| DNA polymerase III, delta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 325 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69 KN ++ +FI G + I ++ NQFK KN I+YHD ++NI Sbjct: 11 KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +NE++S SLFS K I + +KK+ L + +I + N +++ S +KK NT Sbjct: 61 LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K + DN I+++D + L S++KEA Q+L G+ IA+ Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLS---LSLTKEATQLLALKTEGNLIAT 176 Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L+ LS +D + +++ ++ + + + ++ A + A+ + + L Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233 Query: 244 KMPSHALLHGFLQKFQLLEKIH 265 +L ++ ++L ++ Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255 >gi|51891613|ref|YP_074304.1| hypothetical protein STH475 [Symbiobacterium thermophilum IAM 14863] gi|51855302|dbj|BAD39460.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 344 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 113/330 (34%), Gaps = 23/330 (6%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 H+ + + + + V++ YG + L+ E+ + + F+ VL Sbjct: 4 HEVLDEIGRGIL--RPVYLVYGEEGFLVEEVYRALRAAVVHPETADFNFHVLEPG--PDQ 59 Query: 67 ISTFWNEINSTSLFSKKKIILI----------ENLSTEKKVLDC----LEEIIIKNICNH 112 +S + + F++K+++++ S E+ D L + + + Sbjct: 60 LSQALSLAQTQPFFAEKRLVVVKECPAIVPRRRGGSDEQAPADAGDAALLGYLKAPVAST 119 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 +++ + ++ K A+ C P + K + +A + Sbjct: 120 VLLFLAAQVDVRRKTTKALMAA--GAAVECRPLKPEDAAMWAQRRAQSEGKRLGGQAAHL 177 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L+ +G D EL+KL Y I V+ ++ I + +A ++ + Sbjct: 178 LVERVGTDLGMLARELEKLVLYVGPAGEIRAADVETMVSAMAETEIFRLSDAVLRRERAR 237 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ L + L LL +F+ L + + +S ++ Q ++ P Sbjct: 238 AVALLERLLQQVDHPLQLLSALTGRFRQLLLVKALA-ARRLSPKEAAQLA--HMHPYAYG 294 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322 L E ++ + L ++ + Sbjct: 295 KLAEHAATVDRAEIVRALKRLLEADLAIKS 324 >gi|254284078|ref|ZP_04959046.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR51-B] gi|219680281|gb|EED36630.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR51-B] Length = 343 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 115/309 (37%), Gaps = 14/309 (4%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 ++ + ++ L ++ G + L+ E + + D + Sbjct: 2 QVKPEQLSRQLDAGLA---RCYLVTGDEPLLVQESADAIRAAARAAGCDERERIDTTTPA 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + SLF+++K++ + S + L+ + + + ++II + + Sbjct: 59 GWQD---LLQSGGALSLFAQRKLVEVHVPSGKPGTEGSKALQAYLDREGDDVLLII-AGK 114 Query: 121 IKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 I K++ K + ++ +P + + ++ L +EA Q+L + G Sbjct: 115 IDKSSRRGKWFNALDQAGVVVTVWPVSPQEMPRWLQGRLQQAGLRADREALQLLSERVEG 174 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E++KL + IT Q V + + D + +I+ + G A+ Sbjct: 175 NLLAAMQEVEKLKLLA-DSNDITAQTVIECVFDNARYSVFGLIDKALAGDARGALRTLRG 233 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A LL ++ +LL +I + + + + + + ++Q+ L Sbjct: 234 LRAEATAPPVLLWAINREVKLLAEI-TDDIARGTAAHSAMNQ--RGVWRNRTALVQQGLD 290 Query: 300 IWNKNLVRE 308 + + E Sbjct: 291 RHTPSSIAE 299 >gi|73662480|ref|YP_301261.1| DNA polymerase III subunit delta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494995|dbj|BAE18316.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 324 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 123/299 (41%), Gaps = 18/299 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ + YG LI + + N D F+ V N + +++ E + Sbjct: 1 MSNNIITIYGEVPELIEKKSAEEINNYLNAPKDDFNFVKYNL--YEHDLAPVIEESLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK++L++N + EK +D L E I K + +II + +++ + L Sbjct: 59 FFSDKKVVLVQNAYLFTGEKPPKDLNHNIDQLIEFIEKYDGDTLIIFEVYHSKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + +M +++ L K I ++A + + G + + E Sbjct: 119 VKTLKKNAQLKKIEQMSEEE--IMQWMKKELHENFKDIKQDALDLFIELTGVNFNIVKQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL + + I +Q V I+ + + + + + K NAI L + +A K Sbjct: 177 LEKLILFLGDRSTINKQDVYQIVNRSLEQNVFLLTDYIQKNKKSNAIQLVNDLIAMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL ++L + I+ + S ++I + N+ P + + R + + Sbjct: 237 IKLLALITSNYRLFYQSKILSQ-KGYSGQQIAKTI--NVHPYRVKLALNQARNYQLENL 292 >gi|85375279|ref|YP_459341.1| DNA polymerase III delta subunit [Erythrobacter litoralis HTCC2594] gi|84788362|gb|ABC64544.1| DNA polymerase III delta subunit [Erythrobacter litoralis HTCC2594] Length = 345 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 108/322 (33%), Gaps = 13/322 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 VF F G D+ + + + DP + L+ +++++ +E S+SLF Sbjct: 21 VFFFCGPDE----AGASAAAEAVCGALADPGERIELSGADLKRDPVALGDEARSSSLFGD 76 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + I + E D L + +++ ++ + K+ + L Sbjct: 77 ARHIFVRANGDEAH--DALANLFAGEGDACPVLVVASAATDKSRTAKLLARREDALVAML 134 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LED 198 YP + + + + + + + + D+ +R+E++KL+ Y Sbjct: 135 YPPDLRSMTATVRDLADTAGVRLGGDLAERIARAATLDQRLARSEIEKLALYLDAAPATP 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 Q I T I+NA + G + S A+ ++ Sbjct: 195 KQADAQDWHAIGAKTEEDGFMPIVNAALGGHAKRLPGELQRMRELSINSVAIALAVERRT 254 Query: 259 QLLEKI--HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 L ++ + + F + ++ + I L+E LRIW + + ++ Sbjct: 255 AQLAQLAGRLGRSGDVDGFIQSEKQARR-IFWKDERDLREQLRIWRGARLDRLVERVTAL 313 Query: 317 IHLARKKKYLEKNIIFQTILYI 338 + ++ Q + I Sbjct: 314 HRSLLANSQSGELLLAQELTTI 335 >gi|90022950|ref|YP_528777.1| DNA polymerase III subunit delta [Saccharophagus degradans 2-40] gi|89952550|gb|ABD82565.1| DNA polymerase III, delta subunit [Saccharophagus degradans 2-40] Length = 348 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 128/358 (35%), Gaps = 22/358 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I + + + KN V + G + ++ E + + F+ L+ Sbjct: 1 MARINADQ-LASHIKNALP--PVILITGDEALVVQESCDAVRAAARKQG---FTERELHH 54 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + + NS SLFS+KKII + N L E+ K + +I++ Sbjct: 55 TDAGFSWDQLLQSANSLSLFSEKKIIEIRVTNGKPGDAGSKALVELCQKPSADTLILLVF 114 Query: 119 NEIKKNNTLRKIAEKFTSVLAISC----YPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 +I K K ++ AI C +P L I++ L A IL Sbjct: 115 PKIDKRAQNSKWF---KALEAIGCIVTVWPVGMPQLPRWIDQRLKAAGLRADSAAIDILA 171 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 A + G+ +A+ E++KL + LI Q + + ++ + +++ + G A Sbjct: 172 AKVEGNLLAAAQEIEKLKLVA-TNELIDSQLMTSAVMESARYDVFGLLDKALLGDAQAAS 230 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 +L ++ ++L I + + + ++ ++ Sbjct: 231 RTLLGLKGEGTEPTVILWALTREARILASIKEATDAGEHFGQAA---KRNGVWDKRQRLV 287 Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 Q++L + + L K R K + + + +L I + ++F RT Sbjct: 288 QQALSQQSAKKLHMLLRKCA---LADRTIKGMSRGDAWAILLDITLSLAGVDSFTPRT 342 >gi|148657183|ref|YP_001277388.1| DNA polymerase III subunit delta [Roseiflexus sp. RS-1] gi|148569293|gb|ABQ91438.1| DNA polymerase III, delta subunit [Roseiflexus sp. RS-1] Length = 315 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 115/303 (37%), Gaps = 12/303 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG D+ E + K + D ++ L+ + + + Sbjct: 2 LYLIYGPDEYARSEALAALKARVPADVAD-LNMTTLDGRRTTLD--DLVTACEAMPFLAD 58 Query: 83 KKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++++++ +L +K D L + + ++ I+S ++ + + L +K SV Sbjct: 59 RRLVIVYDLLKHQKAGKERDELRAYLERVPDFCDLVFIESEDVDRRSALFTFLKKHASVH 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 C P L+ + E S+ ++A Q L G D NEL KL+S+ Sbjct: 119 --ECLPREGAALLTWLHERAQSLDVSLDRDAAQRLTLLAGNDGRLLVNELAKLASFVGRG 176 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT + V ++ D + I+ + A+ + +L ++ Sbjct: 177 GRITVREVDLLVADMQEQNLFAFIDDLSARRRSAALSSLRRLFDDGQAAQYILFMMARQV 236 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 ++L + + + + I + + +++ I E +R ++ +R+ ++ H Sbjct: 237 RILLGVKDLV-AQRMRPDDIAAQLGQKPFVVRKAI--EQVRGFSDADLRQLHRRLLELDH 293 Query: 319 LAR 321 ++ Sbjct: 294 ASK 296 >gi|126653872|ref|ZP_01725719.1| DNA polymerase III subunit delta [Bacillus sp. B14905] gi|126589597|gb|EAZ83736.1| DNA polymerase III subunit delta [Bacillus sp. B14905] Length = 388 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 129/329 (39%), Gaps = 26/329 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I E I + K+ + D + + E+ + +E ++ FS Sbjct: 68 PVYLLIGEESYFIDETIKRIKEAMG--PEDELEMSTFDLDEVPVDA--VMDEADTIPFFS 123 Query: 82 KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 +K+I+ +N S K + LE + + + + K + RK Sbjct: 124 AQKLIIAKNASFLKATEKGKEKIDHDVKRLETWLSNPSDFSVTVFIAPYEKLDE--RKKV 181 Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K L + + L I+ ++ SI+++A ++L+ +G + + + E+ Sbjct: 182 TKMMKEHALLVEAETPKEQDLAVWIQSNVKAQGNSITQDAIELLVTMVGANMLQLQMEID 241 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ Y E IT V+D++ T +++NA + +A+ + L K Sbjct: 242 KLTLYLGEGGEITVSLVEDLVAKTLEQDAFKMLNAYLANDSVSALSIYHDLLRQKQEPIM 301 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L+ + + + + ++I + + I P + ++ E ++ + Sbjct: 302 LVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMTEQRNRPSEESLLRA 358 Query: 310 LHKIDHRIHLAR-----KKKYLEKNIIFQ 333 L+++ + +++YLE ++ Q Sbjct: 359 LYQLAEVDLQLKSTGGNRERYLELFLLRQ 387 >gi|81428678|ref|YP_395678.1| DNA polymerase III subunit delta [Lactobacillus sakei subsp. sakei 23K] gi|78610320|emb|CAI55369.1| DNA-directed DNA polymerase III, delta subunit [Lactobacillus sakei subsp. sakei 23K] Length = 342 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 125/331 (37%), Gaps = 23/331 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + LI E Q K+ + + +++ ++ S F Sbjct: 17 PIYLVLGQESALI-EKARQLFKHYLPEEEQTMNFASYDLATT--DVANALDDAESAPFFG 73 Query: 82 KKKIILIEN-----LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 +++I+ ++N K LD + + K +++ + ++ + + K Sbjct: 74 ERRIVFMQNPYFLTGEKVKNKLDQDLVRFQAYLEKPQPTTSVVLFAPYPKLDERKKIVKQ 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K S++++ N+ + L+ L I EA +L++ D EL K Sbjct: 134 LKKVASLVSVE--KVNERQVQQLVTAELKQQGMQIESEALALLISKTNSDYSQIMAELPK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y + IT V +++ + + ++ +Q K+ + + L K + Sbjct: 192 LMLYAQQTKQITTAAVAELVSSSIEDNVFSLVPLVLQKKVGPVLTMYHELLLQKEEPLKI 251 Query: 251 LHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 + +F+LL ++ I+ E + +++ I P + + + ++ ++K + + Sbjct: 252 NAILIGQFRLLLQVKILFEKGYSQGNLASVLK-----IHPYRIKLAMQQIKHFSKQTLAQ 306 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 ++ + + + + +L A Sbjct: 307 AYLGLEEIEVKIKTGQGQPELLFELFMLQFA 337 >gi|71281960|ref|YP_268458.1| DNA polymerase III, delta subunit [Colwellia psychrerythraea 34H] gi|71147700|gb|AAZ28173.1| DNA polymerase III, delta subunit [Colwellia psychrerythraea 34H] Length = 354 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 114/316 (36%), Gaps = 27/316 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + N + FS ++ + + + +E S SLF+ Sbjct: 18 PVWLVFGDEPWQKD---NSLAAIKNNAKSQGFSEIIRFSSDTAFDWQQLLDEYQSLSLFA 74 Query: 82 KKKIILIE------NLSTEKKVLDCLEEIIIKN------ICNHIIIIKSNEIKKNNTLRK 129 ++II +E + K +L L E + ++ + I I ++ + RK Sbjct: 75 SQRIIEVELTTVKVGDAGNKALL-ALAERLTQDINSGHVPQDVIFIFHGAKLDAASANRK 133 Query: 130 IAEKFTSVLAISCYP---DNKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRIASR 185 S+ + CY D ++ LM + +IS E +L+ G+ +A Sbjct: 134 WF---KSLTQLGCYLPLYDIELKLMPQWLNNQARQLKLNISPELNALLIELFEGNLLALA 190 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 EL KL I+ + + +I ++I ++G I + D M Sbjct: 191 QELDKLVL-LFGSQTISVEQAEQLIIKQAKFNPFQVIEVLLRGDCAKCITMLDQLQQEGM 249 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 L+ F ++ L + S I ++ I ++ + Q +L + Sbjct: 250 APAQLIWVFHKEINQLYAMLNQL-AQGESIANIYKQYR--IWDKRKPLYQHALTHIKLDN 306 Query: 306 VRETLHKIDHRIHLAR 321 V+ + +I L++ Sbjct: 307 VKRAMMRIADIDLLSK 322 >gi|332975797|gb|EGK12678.1| DNA-directed DNA polymerase III delta subunit [Desmospora sp. 8437] Length = 338 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 130/342 (38%), Gaps = 38/342 (11%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD---PFSLVVLN 59 IES +F V++FYG + L+ E I + + + D +++ L Sbjct: 8 EIESGRFA-----------PVYLFYGMETFLMEEAIKRLEDAVLGDGEDRQWNHTVMDLE 56 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIIL---------IENLSTEKKVLDCLEEIIIKNIC 110 +Q E + S F ++++ ++ + L + + Sbjct: 57 ETSVQD----LVLEAETPSFFGGHRLVVGKNAWFLTSARRREKQEHRPEELVRYAARPLE 112 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 ++++I K + + + + V + +P + L + L + Sbjct: 113 GNVLVITVPAEKPDTRKKVVKDLKKQVREVVFHPLDSKELPRWVAGKLNETGVKVHPRTA 172 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 ++L+ +GGD E++KL++Y IT + V +++ T + ++++ + + Sbjct: 173 EVLIRQVGGDLRLLDMEIRKLATYAGPSGSITPETVTELVSRTLEQDVFKLVDRVARRRT 232 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 I L L ++ +L +++F+L+ ++ ++ +S +I + + P+K Sbjct: 233 AEGIALFYDLLQNREEPIRILALIIRQFRLMLQVKVLA-AKGMSEREIASTLKVHPYPVK 291 Query: 291 RNI------LQESLRIWNKNLVRETLH----KIDHRIHLARK 322 + + +LR W + +ID + + R Sbjct: 292 LALRQVNTCSEGALREWLFQAIEAEREIKSGRIDKTLAVERL 333 >gi|227432085|ref|ZP_03914098.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352167|gb|EEJ42380.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 333 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 133/329 (40%), Gaps = 24/329 (7%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +Q+ +N +++F +I G ++ L+ + F K + + ++ E + + Sbjct: 6 LQQQIENNAMANF-YIVTGEEETLLSHAKSMF-KGLVDQEDRDMNYSQIDLTE--QTLDV 61 Query: 70 FWNEINSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 N+ S F +++++++N + + L ++ + + +I++ +N++K Sbjct: 62 VINDAMSVPFFGDRRVVVVKNPQFLTATGKVGDRYQELLLKLFDQPVLQNIVVFFANDLK 121 Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K L K+ K +++ N+ I + + +I EA L+ Sbjct: 122 LDKRKKLAKVLLKTAENISLP--ALNERQAQQAIVQQIDQRSYAIEPEALHELMQRTNAQ 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +NEL KL +Y + IT V ++ T ++++A I+ + A+ L Sbjct: 180 YTDMKNELPKLITYAEQTKKITLDVVSALVPKTLTANAFDLVDAVIKRRPQEALTLYHDL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + L +F+LL + + + + I + + + P + + +E+LR Sbjct: 240 LQNGEAPLRLNAVLTNQFRLL----LQVAGLSGNDQDIGAQLK--VHPYRVKLAKEALRS 293 Query: 301 WNKNLVRE---TLHKIDHRIHLARKKKYL 326 + VR + I+ ++ + L Sbjct: 294 YPPQFVRTGYLGMIDIETQLKSTSQDPEL 322 >gi|94969383|ref|YP_591431.1| DNA polymerase III, delta subunit [Candidatus Koribacter versatilis Ellin345] gi|94551433|gb|ABF41357.1| DNA polymerase III, delta subunit [Candidatus Koribacter versatilis Ellin345] Length = 374 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 130/363 (35%), Gaps = 33/363 (9%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + +F+ + + + +VFI G + + + ++ FSL ++ + Sbjct: 7 TERFVSEVEQRKLKAGYVFI--GDEAFFRKQCRDAILTHLVPPDVREFSLYEMDLSD--S 62 Query: 66 NISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 I + + SL + ++ + +E+ + +II ++ Sbjct: 63 GIGEVLDRARTPSLMAPFQVFFVRGTKNLYGRGKHDDEFAAIEDYFKNPNPDALIIFVAD 122 Query: 120 EIKKNNTLRKI-------AEKFTSVLAISC-------YPDNKIHLMDLIEESLLIGQKSI 165 I +RK+ EK L C DN+ L + + Sbjct: 123 HISIPADVRKMDYQDKERYEKIRETLGDWCSLIEFARVEDNEAAKWAL--QIAQNQGVKL 180 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 ++A + L+ +LGGD + NEL+KL Y E IT V+ ++ + E+ +A Sbjct: 181 EQDAARELVDSLGGDMMLLANELEKLVLYVGEKKRITLGDVETMVLAAKQRSLYELTDAI 240 Query: 226 IQGKIYNAIMLADFFLASK---MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII-QK 281 Q A+ + D L++ + L+ + F+ + I + + +++ Q Sbjct: 241 SQHDRVKALQVLDAILSTGDGEEAAIGHLYMLARTFRQMLVISERNVRDSRALWQVLWQG 300 Query: 282 TE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 +I++++ R ++ + + + R ++ I+ IL +A Sbjct: 301 FRVPP--FAAEDIIRQARRFKSRRELTRAIRLVAKADLAVRSNPPSKRLILENLILDLAS 358 Query: 341 TAC 343 Sbjct: 359 EPR 361 >gi|52786483|ref|YP_092312.1| DNA polymerase III subunit delta [Bacillus licheniformis ATCC 14580] gi|52348985|gb|AAU41619.1| YqeN [Bacillus licheniformis ATCC 14580] Length = 354 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 114/304 (37%), Gaps = 16/304 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79 H V+ YG + L+ E + + ++ + F+ + + ++++ E + Sbjct: 23 HPVYCLYGKETHLLQETVQRIRQAVVDEETKDFNFSIFD---LEEDALDLAVEDAETFPF 79 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 ++++++ +N + EKK L LE I + + ++ + K + + Sbjct: 80 MGERRLVVAKNPAFLTAEKKKDKLEHNLGVLEAYITQPAPYSVFVLLAPYEKLDERKKLT 139 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + D I K I EA + L+ A E++K Sbjct: 140 KLLKKHAHMVEAKELTAKETADFIAGLAKSEGKQIEPEAAEELVLLCHASLSAIAQEVKK 199 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS+Y + IT + V+ ++ I E+IN + K A+ + L + Sbjct: 200 LSTYTGDRGEITIEDVRKLVARGLEQNIFELINKVVNRKRTEALQIFYDLLKQNEEPIKM 259 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+LL + + ++I + + P + + E R++++ +R + Sbjct: 260 MALIANQFRLLMQTKYFSD-QGYGQKQIASNLK--VHPFRVKLAIEQARLFSEQELRNII 316 Query: 311 HKID 314 ++ Sbjct: 317 EQLA 320 >gi|328953430|ref|YP_004370764.1| DNA polymerase III, delta subunit [Desulfobacca acetoxidans DSM 11109] gi|328453754|gb|AEB09583.1| DNA polymerase III, delta subunit [Desulfobacca acetoxidans DSM 11109] Length = 343 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 122/320 (38%), Gaps = 9/320 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG ++ L+ + + + ++ D + L A EI + E S L+ Sbjct: 17 PVYLFYGEEEFLVRRALTRLEDWLAQK-EDLAARTSLEAGEISLLEA--LTEARSPQLWG 73 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVL 138 +++++I + K L LE + +++ + +K + T R Sbjct: 74 GRQLVIIWRMERYKAKELAALESYLANPASQTCLVLVAIGLKSKDVQTHRIWRRLQEQDA 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A+ + + L +++ K +S +A + L+ +G + + EL+KL Y ++ Sbjct: 134 ALGFFRLRENELPGWLQKEARQLGKMLSPDAARQLIEAVGFNLLDLHQELEKLVLYVGKE 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT + V + I E+++A Q + A+ + + L P +L ++ Sbjct: 194 QTITAEAVAQLSSHGRTHSIFELVDALGQSRPDKALKVLNRLLELGEPPAIILVMLARQV 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 +LL + S E I+ LQ + +++ L ++ Sbjct: 254 RLLMRTREALRRGLGSKELAQTLELPGIV---AEKLQRQAGGFRLAQLQDHLIRLHEADL 310 Query: 319 LARKKKYLEKNIIFQTILYI 338 + ++ + IL + Sbjct: 311 GFKTGMAPPHLLLEKVILEL 330 >gi|56421048|ref|YP_148366.1| DNA polymerase III subunit delta [Geobacillus kaustophilus HTA426] gi|56380890|dbj|BAD76798.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 348 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 126/340 (37%), Gaps = 20/340 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ L+ E + ++L V + E + E + F + Sbjct: 17 LYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEETPVEAA--LEEAETVPFFGE 74 Query: 83 KKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ILI++ EK++ L LE + I++ + ++ + + K+A+ Sbjct: 75 RRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLAK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + V+ + + L + + S EA +LL G A NE+ KL+ Sbjct: 135 EQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKLA 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + I V+ ++ T + ++ + I A+ L + +L Sbjct: 193 LFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKILA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 F+LL ++ + + I K + L ++ R + + E +++ Sbjct: 253 LLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAINE 309 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYI--AQTACKNNNFYK 350 + + K +++ + + +L + A + + Sbjct: 310 LADADYEV-KSGAVDRRLAVELLLMRWGTRPAQAGRHGRR 348 >gi|315649928|ref|ZP_07903008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487698|gb|EFU78001.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 322 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 7/261 (2%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G D+ L + K I D + I ++ N+ FS+ Sbjct: 16 IYVLSGDDEFLKNSYKKRLKSAIVG--EDQMNFAYFEGKGI--DVDVVIEFANTLPFFSE 71 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + ILIE K + I + II ++ K + L K ++ + + Sbjct: 72 YRCILIEESLWFKSGNEKFLNYISAKPDSTKIIFVEKDLDKRSKLYKKVKELGYITEL-- 129 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 LM+ + K I+ + +A +G D ++EL KL S+ L+ +I Sbjct: 130 NHPTNDELMNWTGNIINKSGKKITVSNMNLFIARVGNDMERLKSELDKLLSFTLDKDIIE 189 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 E+ + + + I E++ + KI +A+ + + +A K P ++ ++F L Sbjct: 190 EEDIIAVTSISLTNRIFELVKSITNNKIQDALDIYEDLVALKEPPLKIMILITRQFNQLL 249 Query: 263 KIHIIKECSNISFEKIIQKTE 283 +I + S + II + Sbjct: 250 QIK-ELATAGFSEKDIISSMK 269 >gi|331007748|ref|ZP_08330872.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC1989] gi|330418432|gb|EGG92974.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC1989] Length = 349 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 118/308 (38%), Gaps = 17/308 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + ++ E + ++ F+ ++ Q NS SLF+ Sbjct: 19 PVYLVSGDETLIVQETCDAIRQAARKAG---FTERERYHVDKQFEWQQLLASANSLSLFN 75 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTS 136 KKII IEN + + E + +++++I + ++ + K EK Sbjct: 76 DKKIIELRIENGKPGAEGSKTICEYLAHASDDNLLLIVTPKLDSGTQRSKWVKQIEKAGY 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +P + L +++ L +A ++L + G+ +A+ E++KL Sbjct: 136 --WIPVWPISAAQLPRWLQQRLQQAGLKADSQAIELLATRIEGNLLAAHQEIEKLRLLA- 192 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 +D ++ + + + + D+ + +++ + G A+ + + +L + Sbjct: 193 KDEWLSPELIANTVADSARYDVFGLVDKALMGDARGAVRNLNGLKSEGTEPITILWALAR 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---I 313 + ++L I +F + + ++ + Q++L + + L + I Sbjct: 253 EIRVLLTIASAV-AQGQNFSWAAKNAG--VWDKRQPLAQQALNRLHHKQLTLLLRQANGI 309 Query: 314 DHRIHLAR 321 D I R Sbjct: 310 DKAIKGLR 317 >gi|163119559|ref|YP_079896.2| DNA polymerase III subunit delta [Bacillus licheniformis ATCC 14580] gi|319644938|ref|ZP_07999171.1| YqeN protein [Bacillus sp. BT1B_CT2] gi|18266367|gb|AAL67527.1|AF459916_4 conserved hypothetical protein YqeN [Bacillus licheniformis] gi|145903068|gb|AAU24258.2| DNA polymerase III clamp loader subunit, C-terminal [Bacillus licheniformis ATCC 14580] gi|317392747|gb|EFV73541.1| YqeN protein [Bacillus sp. BT1B_CT2] Length = 347 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 114/304 (37%), Gaps = 16/304 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79 H V+ YG + L+ E + + ++ + F+ + + ++++ E + Sbjct: 16 HPVYCLYGKETHLLQETVQRIRQAVVDEETKDFNFSIFD---LEEDALDLAVEDAETFPF 72 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 ++++++ +N + EKK L LE I + + ++ + K + + Sbjct: 73 MGERRLVVAKNPAFLTAEKKKDKLEHNLGVLEAYITQPAPYSVFVLLAPYEKLDERKKLT 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + D I K I EA + L+ A E++K Sbjct: 133 KLLKKHAHMVEAKELTAKETADFIAGLAKSEGKQIEPEAAEELVLLCHASLSAIAQEVKK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS+Y + IT + V+ ++ I E+IN + K A+ + L + Sbjct: 193 LSTYTGDRGEITIEDVRKLVARGLEQNIFELINKVVNRKRTEALQIFYDLLKQNEEPIKM 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+LL + + ++I + + P + + E R++++ +R + Sbjct: 253 MALIANQFRLLMQTKYFSD-QGYGQKQIASNLK--VHPFRVKLAIEQARLFSEQELRNII 309 Query: 311 HKID 314 ++ Sbjct: 310 EQLA 313 >gi|261405577|ref|YP_003241818.1| DNA polymerase III subunit delta [Paenibacillus sp. Y412MC10] gi|261282040|gb|ACX64011.1| DNA polymerase III, delta subunit [Paenibacillus sp. Y412MC10] Length = 339 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 114/301 (37%), Gaps = 14/301 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YGS+K + E + + F+LV ++ E+ I T E + + Sbjct: 18 VYLLYGSEKFQMKEFAEFLEAQLIPKEDRDFALVHMDLGEV--PIQTVVEEAETVPFMVQ 75 Query: 83 KKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KK+I + + + D L + + +I+ + K + + + Sbjct: 76 KKLIFVRDTAFFTAAKDNGKVDHRPEALLDYLTDPADYSVIVFMVGQEKLDERKKVVKAV 135 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 S +A+S P L+ +++ + G ++ A + L+ N G A E++KL Sbjct: 136 KKSGVALSFMPLGGDELLRWVDKQVKKGGCTLRAGAAEALVRNAGTSLQALSGEIEKLCL 195 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y D I V ++ + + ++ ++ A+ + L + + Sbjct: 196 YAGADGAIDVATVDMLVARSTEQNVFALVEDIANLRLDKALGIYYELLKQREEPIKIAAL 255 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++F+++ ++ + + S ++I + + P I E R + + L+ + Sbjct: 256 ITRQFRIILQVKTLS-TQSYSQQQIASQIG--VHPYAVKIAGEQARKFQTARLEGILNHL 312 Query: 314 D 314 Sbjct: 313 A 313 >gi|332637226|ref|ZP_08416089.1| DNA polymerase III subunit delta [Weissella cibaria KACC 11862] Length = 340 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 117/299 (39%), Gaps = 22/299 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80 +++ G+D+ L+ +Q + D + L ++++ ++ S F Sbjct: 19 PIYLIQGTDQYLL----DQVRSAFVSLIPDEDRTLNLAQFDMRETPLGVAVDDARSVPFF 74 Query: 81 SKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 +++++I++ + + ++ L +++I + K ++ +K+ Sbjct: 75 GDRRVVMIDDAYFLTGENPRTKVEHHVEDLIAYAEHPEPQTVLVIFAPYEKLDSR-KKVV 133 Query: 132 EKFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + A + D + + +I + L +S A Q+L+ +EL K Sbjct: 134 KLLKEQAAYLAFGDLTEKDVRSMITDKLRQNGFEMSGPAIQLLVRLTNMSLTQIMSELDK 193 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y + I EQ V ++ T I ++INA + K+ A+ L + L Sbjct: 194 LMLYAYDTKQIDEQAVDALVTRTLSENIFDLINALLNRKLTRAVELYHELIEGGEAPLRL 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L +F+LL ++ + + + + + P + + ++++R ++ + + Sbjct: 254 HAAILGQFRLLLQVKSATQSEAGTAKML------KVNPYRVKLARQTVRRFSYPALAKA 306 >gi|302333263|gb|ADL23456.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus JKD6159] Length = 324 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 112/299 (37%), Gaps = 18/299 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K + + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKNHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDEL 292 >gi|304385133|ref|ZP_07367479.1| DNA-directed DNA polymerase III delta subunit [Pediococcus acidilactici DSM 20284] gi|304329327|gb|EFL96547.1| DNA-directed DNA polymerase III delta subunit [Pediococcus acidilactici DSM 20284] Length = 339 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 124/324 (38%), Gaps = 13/324 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G D I + + ++ + ++ ++ S+ F Sbjct: 17 PIYLIEGPD-NYIQNAAKKILTALIPEDQQVMNVGTYDLE--NTDLGLLLDDAQSSPFFG 73 Query: 82 KKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++++ N L+ EK LD L + + I++ + K + + + + Sbjct: 74 DYRLVIANNPVFLTGEKTKVKFNLDGLINYLKQPEPTTILVFAAKYEKLDGRKKIVKDLK 133 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I P + LI++ + Q I+ A + L+ G + NEL+KL+ Y Sbjct: 134 KQATVIDANPPKEADTRQLIQQFVNERQIQIASPAVEELILRTGNNLAQVINELEKLTVY 193 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + I + V+ ++ + + ++I ++G + +I L ++ + Sbjct: 194 AADSKHIDLEAVQKLVPKSLTQNVFDLIKVLMKGDVRQSIADYSVLLLNQEQPLRINAAL 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL ++ I+ E S K+ Q+ + P + + +++R ++ ++ + Sbjct: 254 VSQFRLLLQVKILTER-GFSQGKLAQELKA--HPYRIKLAMQAVRQFDMASLKRAFLGLL 310 Query: 315 HRIHLARKKKYLEKNIIFQTILYI 338 + + + + ++ I Sbjct: 311 DLEEQLKTTQRPPQELFELFLVKI 334 >gi|156743135|ref|YP_001433264.1| DNA polymerase III subunit delta [Roseiflexus castenholzii DSM 13941] gi|156234463|gb|ABU59246.1| DNA polymerase III, delta subunit [Roseiflexus castenholzii DSM 13941] Length = 354 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 114/308 (37%), Gaps = 19/308 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79 +F+ YG D+ E + K + P + LN + +T + + Sbjct: 41 LFLVYGPDEYGRSEALAALKARV------PAEVADLNITTLDGRRTTLSDIVAACEAMPF 94 Query: 80 FSKKKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFT 135 + ++++++++L +K D + + ++ ++S+E K ++L +K Sbjct: 95 LADRRLVIVDDLLKHQKAGKDRDDVRAYLEHVPDACDLVFVESDEFDKRSSLFTFLKKHA 154 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 V C P L+ + + ++ ++A Q L G D EL KL+++ Sbjct: 155 EVR--ECVPREGADLLRWLSDRAKGLGVTLERDAAQRLTLLAGNDSRLLVTELTKLATFV 212 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT + V ++ D + I+ + A+ L + +L Sbjct: 213 GRRGRITVREVDLLVADRQEQNLFSFIDELSARRRSAALTALRRLLDDGQAAQYILFMMA 272 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES--LRIWNKNLVRETLHKI 313 ++ ++L + + + I + + +++ L+++ + + L ++ Sbjct: 273 RQVRILMGVR-DLAAQRLRPDDIANRLGQKPFVVRK-ALEQAHGFSDADLQRLHRRLLEL 330 Query: 314 DHRIHLAR 321 DH R Sbjct: 331 DHASKTGR 338 >gi|270291420|ref|ZP_06197642.1| DNA polymerase III, delta subunit [Pediococcus acidilactici 7_4] gi|270280266|gb|EFA26102.1| DNA polymerase III, delta subunit [Pediococcus acidilactici 7_4] Length = 339 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 123/314 (39%), Gaps = 16/314 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G D I + + ++ + ++ ++ S+ F Sbjct: 17 PIYLIEGPD-NYIQNAAKKILTALIPEDQQVMNVGTYDLE--NTDLGLLLDDAQSSPFFG 73 Query: 82 KKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++++ N L+ EK LD L + + I++ + K + + + + Sbjct: 74 DYRLVIANNPVFLTGEKTKVKFNLDGLINYLKQPEPTTILVFAAKYEKLDGRKKIVKDLK 133 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I P + LI++ + Q I+ A + L+ G + NEL+KL+ Y Sbjct: 134 KQATVIDANPPKEADTRQLIQQFVNERQIQIASPAVEELILRTGNNLAQVINELEKLTVY 193 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + I + V+ ++ + + ++I ++G + +I L ++ + Sbjct: 194 AADSKHIDLEAVQKLVPKSLTQNVFDLIKVLMKGDVRQSIADYSVLLLNQEQPLRINAAL 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311 + +F+LL ++ I+ E S K+ Q+ + P + + +++R ++ ++ L Sbjct: 254 VSQFRLLLQVKILTER-GFSQGKLAQELKA--HPYRIKLAMQAVRQFDMASLKRAFLGLL 310 Query: 312 KIDHRIHLARKKKY 325 ++ ++ ++ Sbjct: 311 DLEEQLKTTQRPPQ 324 >gi|331701119|ref|YP_004398078.1| DNA polymerase III subunit delta [Lactobacillus buchneri NRRL B-30929] gi|329128462|gb|AEB73015.1| DNA polymerase III, delta subunit [Lactobacillus buchneri NRRL B-30929] Length = 341 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 122/318 (38%), Gaps = 19/318 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + L + + F K I ++ + + IS + S F Sbjct: 17 PVYLILGDQEYLAGRIKDAFVK-IIPDNERSMNIGNYDMEDTT--ISAAVEDAISVPFFG 73 Query: 82 KKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++I S + +D E + + +++I + ++ + K Sbjct: 74 ERRLVMINRPYFLTGMRTKSKLDQNIDDFLEYLKHPEESTVMVIFAPYDKLDSRKKVTKA 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + I +N+ + L+ + + I +A ++ GG A ++L K Sbjct: 134 LKKVATTIEIGNLRENE--IKKLVTDKIAAAGFKIDHDALDRMVELTGGKLTAMMSDLPK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y + +I V ++ + + +++N+ + ++ + + + Sbjct: 192 LILYNNDTKVIDLASVNGLVSKSMEQNVFDLVNSVLAKNPKQSMDIYHQLILENDEPIRI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +Q+F+LL ++ +I + S + + + P + + +++R +N + +RE Sbjct: 252 NAVLIQQFRLLLQV-MILQKHGYSQGNLASTLK--VHPYRVKLAMQTIRKFNYDQLREAY 308 Query: 311 HKIDHRIHLARKKKYLEK 328 + + + + Sbjct: 309 IGLVDTERQMKSTQRPPE 326 >gi|329924032|ref|ZP_08279295.1| DNA polymerase III, delta subunit [Paenibacillus sp. HGF5] gi|328940871|gb|EGG37179.1| DNA polymerase III, delta subunit [Paenibacillus sp. HGF5] Length = 339 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 114/301 (37%), Gaps = 14/301 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YGS+K + E K + F+LV ++ E+ I T E + + Sbjct: 18 VYLLYGSEKFQMKEFAEFLKAQLIPKEDRDFALVHMDLGEV--PIQTVVEEAETVPFMVQ 75 Query: 83 KKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KK+I + + + D L + + +I+ + K + + + Sbjct: 76 KKLIFVRDTAFFTAAKDNGKVDHRPEALLDYLTDPADYSVIVFMVGQEKLDERKKVVKAV 135 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 S +A+S P L+ +++ + G ++ A + L+ N G + E++KL Sbjct: 136 KKSGVALSFMPLGGDELLRWVDKQVKKGGCTLRAGAAEALVRNAGTSLQSLSGEIEKLCL 195 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y D I V ++ + + ++ ++ A+ + L + + Sbjct: 196 YAGADGAIDVATVDMLVARSTEQNVFALVEDIANLRLDKALGIYYELLKQREEPIKIAAL 255 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++F+++ ++ + + S ++I + + P I E R + + L+ + Sbjct: 256 ITRQFRIILQVKTLS-TQSYSQQQIASQIG--VHPYAVKIAGEQARKFQTARLEGILNHL 312 Query: 314 D 314 Sbjct: 313 A 313 >gi|295092999|emb|CBK82090.1| DNA polymerase III, delta subunit [Coprococcus sp. ART55/1] Length = 339 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 89/256 (34%), Gaps = 7/256 (2%) Query: 22 FVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ YG ++ L+ D + + I + S N F Sbjct: 27 KIYLLYGEERYLVNQYRDKLLSALT--DKDDNLNFMKFAGNGI--DTSELLAFCNEMPFF 82 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 + ++++L+EN K + + +++ + I ++ L K +K L Sbjct: 83 ADRRVVLVENSGLFKSSNEDFAKKLVEIEDTSVAIFVEMDVDTRYKLFKAVDKNGEALDF 142 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + ++ ++ ++ + + A ++ D +NE+ K+ SY + Sbjct: 143 A--TPDEKMMVTWVKSLFRADGVATTDTAIYKIIEAANMDMNCIKNEVDKMISYAGDTKQ 200 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 ++E V + + ++I+ I + A + L +K + + +++F Sbjct: 201 VSEHDVDLLCSQDAESKVYQMIDFIIAKQKEKACSMYHDLLENKESAIMINACIMRQFNK 260 Query: 261 LEKIHIIKECSNISFE 276 L + + Sbjct: 261 LLLVKMALSDGAQDAS 276 >gi|317968482|ref|ZP_07969872.1| DNA polymerase III subunit delta [Synechococcus sp. CB0205] Length = 326 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 45/328 (13%), Positives = 111/328 (33%), Gaps = 16/328 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D+ + KN +L L+ + + E + Sbjct: 2 PIHLIWGDDEAARSRAVEALVKNQVDPSWQSINLSRLDGNDTNQAAQAL-EEARTAPFGG 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNH-IIIIKS----NEIKKNNTLRKIA- 131 ++I+++ + + LE + ++++ + +K L+K+ Sbjct: 61 GDRVIVLQRSPFCNQCPADLAEQLEASLNLVAEKCHLVLVNAAKPDGRLKTTKALQKLVK 120 Query: 132 --EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 E + D + L++ + + +A Q L +G D +EL+ Sbjct: 121 SGEAQERSFQLPAIWDGSGQVE-LVQRTAQELGLKLQPDAAQALSDAIGSDSARLASELE 179 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KLS Y IT Q V +I ++ + +A + G+ A+ L D LA+ P+ Sbjct: 180 KLSLYAGAGQAITSQAVDALIGSQATNALQ-VGDALLAGQPAAAVALVDVLLAANEPALR 238 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 ++ + + + ++ + I + P + ++++ +R Sbjct: 239 IVATLCGQIRGWLWVSLLDQQGENDVNAIAKAAGIG-NPKRIYVMRKQIRGRKPERFLAL 297 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337 L ++ ++ +L Sbjct: 298 LSQLLQVEASLKRGADPADAFRDGFLLT 325 >gi|299535734|ref|ZP_07049055.1| hypothetical protein BFZC1_06913 [Lysinibacillus fusiformis ZC1] gi|298728934|gb|EFI69488.1| hypothetical protein BFZC1_06913 [Lysinibacillus fusiformis ZC1] Length = 336 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 129/330 (39%), Gaps = 28/330 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80 V++ G + I E I + K+ + + + ++++ +E ++ F Sbjct: 16 PVYLLVGEESYFIDETIKRLKEAMGPEED-----LEMTTFDLEEVPVDVVMDEADTIPFF 70 Query: 81 SKKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 S++K+I+ +N S K + LE + + + + ++ + + Sbjct: 71 SERKLIIAKNASFLKATEKGKEKIDHDVKRLETWLSNPSDFSVTVFIAPYEKLDERKKVT 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ L + + L I+ + SI+++A ++L+ +G + + + E+ Sbjct: 131 KM--MKEHALFVQAETPKEQDLAIWIQGIVKTQGNSITQDAIELLVTMVGANMLQLQMEI 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL+ Y + IT V+D++ T +++NA + A+ + L K Sbjct: 189 DKLTLYLSDGGEITTSLVEDLVAKTLEQDAFKMLNAYLANDSVGALSIYHDLLRQKQEPI 248 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L+ + + + + ++I + + I P + ++ E ++ + Sbjct: 249 MLVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMIEQRHRPSEENLLR 305 Query: 309 TLHKIDHRIHLAR-----KKKYLEKNIIFQ 333 L+++ + +++YLE ++ Q Sbjct: 306 ALYQLAEVDLQLKSSGGNRERYLELFLLRQ 335 >gi|154686816|ref|YP_001421977.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens FZB42] gi|154352667|gb|ABS74746.1| YqeN [Bacillus amyloliquefaciens FZB42] Length = 340 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 120/306 (39%), Gaps = 20/306 (6%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 RSVYCLYGKETYLLQETVSRIRQAVVDEETKDFNLSVFD---LEEDPLDQAVTDAETFPF 71 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 +K++++++N S EKK LE + + + +I + ++ + L Sbjct: 72 MGEKRLVIVKNPSFLTGEKKKEKIEHNTAALETYLKEPAPYTVFVIVAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K L I N D K I EA + L+ G + E+ Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKMIDTEAAEHLVLLANGHLSSIYQEI 189 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 QKLS+Y + IT + V++++ + I E+IN + K ++ + L Sbjct: 190 QKLSAYTGDRHEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ +F+L+ + ++I + + P + + + R++++ +R Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306 Query: 309 TLHKID 314 + ++ Sbjct: 307 IIERLA 312 >gi|313623725|gb|EFR93871.1| DNA polymerase III, delta subunit [Listeria innocua FSL J1-023] Length = 296 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 103/264 (39%), Gaps = 12/264 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIK 117 I E S F K++++ N L+TEK LE + + + ++ Sbjct: 11 IEVVIQEAESMPFFGDKRLVMANNPIFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFV 70 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + K + + + I N+ L +E L +S+EA L+ Sbjct: 71 ARVEKLDERKKLTKLLKKTATVIEAKRPNENELKKWLEAKLNENNMRMSQEAITRLIELT 130 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + NELQKL YC + IT Q V+ ++ + I +++ I I A+ + Sbjct: 131 SGQLTTAMNELQKLMLYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIY 190 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 L K +L +F+LL ++ ++ E S ++ K + + P + + + Sbjct: 191 YDLLKQKEEPIKILALISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQ 247 Query: 298 LRIWNKNLVRETLHKIDHRIHLAR 321 + +++ + + L ++ + Sbjct: 248 AKNFSELQLNQALKRLAEIDLEMK 271 >gi|308174344|ref|YP_003921049.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens DSM 7] gi|307607208|emb|CBI43579.1| DNA polymerase III, delta subunit [Bacillus amyloliquefaciens DSM 7] Length = 340 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 121/306 (39%), Gaps = 20/306 (6%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 RSVYCLYGKETYLLQETVSRIRQAVVDEETKDFNLSVFD---LEEDPLDQAITDAETFPF 71 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 +K++++++N S EKK LE + + + +I + ++ + L Sbjct: 72 MGEKRLVIVKNPSFLTGEKKKEKIEHNTSALETYLKEPAPYTVFVIVAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K L I N D K++ EA + L+ G + E+ Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKTMDTEAAEHLVLLANGHLSSIYQEI 189 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 QKLS+Y + IT + V++++ + I E+IN + K ++ + L Sbjct: 190 QKLSAYTGDRHEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ +F+L+ + ++I + + P + + + R++++ +R Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306 Query: 309 TLHKID 314 + ++ Sbjct: 307 IIERLA 312 >gi|308069977|ref|YP_003871582.1| hypothetical protein PPE_03226 [Paenibacillus polymyxa E681] gi|305859256|gb|ADM71044.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 343 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 116/305 (38%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YGS+K + + + K+ + H F+++ + E I E + Sbjct: 17 PVYLLYGSEKYQMKQFVEMLKEKVVEEEHRDFAIIPYDLTET--PIEVVVEEAETAPFLV 74 Query: 82 KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 KK+I++ + S L+ L + +I+ +++ ++ + + K Sbjct: 75 PKKLIIVRDTSVFAAGKDSGKIEHRLETLLTYMDNPTDYSVIVFTVQAEKLDERKKIVKK 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + SV+A + + L+ I + + ++ A + L+ G + E+ K Sbjct: 135 LKSDASVIAFAPMGGD--DLIAWIHKRAGEREVQLAAGAAESLIQFTGTGLQSLAAEIDK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y I+ ++ ++ + ++ ++ A+ + L K + Sbjct: 193 LCLYAGAQGTISSADIESLVPRNTEQNVFAMVEDLANLRLDKALSIFYELLKQKEEPIKI 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++F + +KE + S+ + ++ ++ P + + R + +R+ L Sbjct: 253 AALITRQF---RIMLQVKELAGQSYSQQQIASQLSLHPYGVKVAGDQARRFRPEQLRQLL 309 Query: 311 HKIDH 315 +++ Sbjct: 310 YELGE 314 >gi|328554291|gb|AEB24783.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens TA208] gi|328912688|gb|AEB64284.1| DNA polymerase III, delta subunit [Bacillus amyloliquefaciens LL3] Length = 340 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 122/306 (39%), Gaps = 20/306 (6%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 RSVYCLYGKETYLLQETVSRIRQAVVDEGTKDFNLSVFD---LEEDPLDQAITDAETFPF 71 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 +K++++++N S EKK LE + + + +I + ++ + L Sbjct: 72 MGEKRLVIVKNPSFLTGEKKKEKIEHNTGALETYLTEPAPYTVFVIVAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K L I N D K+I EA + L+ + G + E+ Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKTIDTEAAEHLVLLVNGHLSSIYQEI 189 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 QKL++Y + IT + V++++ + I E+IN + K ++ + L Sbjct: 190 QKLTAYTGDRQEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ +F+L+ + ++I + + P + + + R++++ +R Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306 Query: 309 TLHKID 314 + K+ Sbjct: 307 IIEKLA 312 >gi|114319563|ref|YP_741246.1| DNA polymerase III, delta subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114225957|gb|ABI55756.1| DNA polymerase III, delta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 338 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 107/316 (33%), Gaps = 19/316 (6%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I+ H + ++L ++ G + LI E ++ + +D ++ + Sbjct: 2 QIKPHDIARHLERDLL---PAYLVAGDEPLLIQESVDAIRATARAQGYDEREVLEVEPGF 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + SLFS++++I + + + ++ + + ++++ S Sbjct: 59 ---EWERLHHAAGNLSLFSERRLIELRLPDGKPGSQGAKAIQGYCRQAPPDTLLLVISGR 115 Query: 121 IK---KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + + + K E + C+P + L S +A +L+A Sbjct: 116 LPGKTRQSAWVKALEGL--GAMVYCWPVGGHEFPGWLRRRLQAHGLQPSDDAVDLLVARS 173 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ E++KL+ + + D+ + ++ +A + G+ A + Sbjct: 174 EGNLLAANQEIEKLAL-LHGSGPLDGDTAAAAVADSARYELNDLGDAMLAGERGRAYHVL 232 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-IIPMKRNILQE 296 + +L + + + + C + + + + + + Sbjct: 233 QGLREEGTAAPLVLWALARDLRAVADLR----CKRPPRPEWERFLRAHGVFKPRVPRVVG 288 Query: 297 SLRIWNKNLVRETLHK 312 + R + L + Sbjct: 289 AARRGRREDWLHLLAR 304 >gi|87119375|ref|ZP_01075273.1| DNA polymerase III subunit delta [Marinomonas sp. MED121] gi|86165766|gb|EAQ67033.1| DNA polymerase III subunit delta [Marinomonas sp. MED121] Length = 345 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 127/311 (40%), Gaps = 12/311 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I++ + Q K L H ++I G + LI E + +K + D V +A Sbjct: 2 KIKAEQLEQTINKEL---HPIYIISGDEPLLIQEASDSIRKLLPSKGIDERLRFVADAQF 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + E + SLFS +++ I+ +K L ++ + ++II++ ++ Sbjct: 59 ---DWQEVLQENQALSLFSSQRLFDIQIDKMSEKHTKALTQLGNELTSDNIILLTLPKLD 115 Query: 123 KNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K K + + + +P L +++ S++++A ++ G+ Sbjct: 116 SRTQKTKWFTKLESQGVFVQIWPVEANRLGQWLQKRASAIDLSLTRDAAALICERNEGNL 175 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +A EL+KL I EQ + D + D+ I ++ + + GK+ ++ Sbjct: 176 LALSQELEKLVLIQGPGSRIDEQTIADSVSDSSRYSIYDLSDRILMGKVKESLHCLQQLG 235 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 A + + +L ++ Q L+K+ ++ +++S + QK I + + +L Sbjct: 236 AEGVDHNIMLWLLNREIQTLDKL--VQASASMSIRQACQKQR--IWDKRIPFYESALSRH 291 Query: 302 NKNLVRETLHK 312 N N + + + Sbjct: 292 NINTLNY-MQR 301 >gi|288555668|ref|YP_003427603.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4] gi|288546828|gb|ADC50711.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4] Length = 341 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 123/325 (37%), Gaps = 23/325 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ +G+ + LI + Q + +++ + E I E + Sbjct: 17 PVYFIHGTQQFLIEDFSQQVLDQVVGQDGSDMNVITYSFSET--PIELAVQEAETLPFLG 74 Query: 82 KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 K++++++ +D L + I +I+ + ++ + + K Sbjct: 75 ANKVVIVKDFQAVTSQKQDVKIEHDIDVLIKYIENPSPESTLILVAPYEKLDERKKITKR 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K I P + + IEE I+KEA++ L+ LG D + + +EL+K Sbjct: 135 LKKE--ATVIEALPFDDRMMKQWIEEQTASHHIQITKEAQERLVERLGFDLLLAASELKK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ Y E IT + V ++ T + +I+ ++ ++ A+++ L K + Sbjct: 193 LALYVGEGGEITPREVDLLVARTLEQDVFALIDFAVKKRLDGALVIYHDLLKQKEDPLKI 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISF-EKIIQKTEKNIIPMKRNILQESLRIW---NKNLV 306 L ++F +I+ + + + + + P + + + + + + Sbjct: 253 LALLARQF----RIYYQVKGLSKQAYSQKQIAAQLKLHPYAVKLASQKVSQFEERSLLTL 308 Query: 307 RETLHKIDHRIHLARKKKYLEKNII 331 E D+ I + +K L ++ Sbjct: 309 LEAAADTDYAIKSGKMEKVLAVELL 333 >gi|304395662|ref|ZP_07377545.1| DNA polymerase III, delta subunit [Pantoea sp. aB] gi|304356956|gb|EFM21320.1| DNA polymerase III, delta subunit [Pantoea sp. aB] Length = 343 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 112/302 (37%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + + + D L+A Q + + + S SLF+++ Sbjct: 21 YLLAGNEPLLLQESADAIRAAATTQGFDEHFSFTLDA---QTDWESLFVSCQSLSLFAQR 77 Query: 84 KI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + + + + L ++ + ++I + ++ K + S + + Sbjct: 78 QTMTLQFPENGPNAAMAEQLVKLSQLLHADILLICRMPKLTKAQENSAWFKALAASAVVV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L + + S+ A Q+L G+ +A L++LS D Sbjct: 138 PCQTPEQAQLPRWVVNRAKALKLSVDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V++ + D ++A + GK A+ + + LL + L Sbjct: 197 LTLPRVEEAVSDAAHFTPFHWVDALLAGKSRRALHILHQLEKEESEVVILLRTLQR--DL 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L +H+ + + ++ + I +R + ++L+ + ++ +H + Sbjct: 255 LTLLHLQRHQARQPLRTLMDQQR--IWQNRRALFTDALQRLDATRLQRAIHLLSQIEITL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|71906182|ref|YP_283769.1| DNA polymerase III subunit delta [Dechloromonas aromatica RCB] gi|71845803|gb|AAZ45299.1| DNA polymerase III, delta subunit [Dechloromonas aromatica RCB] Length = 335 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/321 (14%), Positives = 117/321 (36%), Gaps = 13/321 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ YG D L+ E + + + ++ + + T + + SLF Sbjct: 17 RPLYVLYGDDPLLVIEAADAIRAKSRQQGYSEREVLTVLPQF---DWGTLLSAGGNMSLF 73 Query: 81 SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137 KK+I I K+ L++ +++++I E+ + Sbjct: 74 GDKKLIDLRIPTGKPGKEGSAALQQWCQHLSMDNMLLITLPELDWREEKAVWFTALVNAG 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 +AI L I L Q+S E+ + + + G+ +A+ E+QKL Sbjct: 134 VAIKLMAPPLAELPGWIAGRLRRQQQSADLESLKFIAERVEGNLLAAHQEIQKLGL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ++ +++ + + I+ + A + G I D + +L ++ Sbjct: 193 TGQLSMAQIREAVLNVARYDIDGLREALLAGDIGRLTRTLDGLMQEGEAPPLVLWAMSEE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L I + + +++ + + + ++++L+ + + + + H Sbjct: 253 IRALTIIRAGMDA-GKPMDMLLKDAK--VWGPRATPVKKALQRLSTSALEAA---LQHAG 306 Query: 318 HLARKKKYLEKNIIFQTILYI 338 + R K + + I++ L + Sbjct: 307 KIDRLAKGIGQGNIWEEFLRL 327 >gi|321312040|ref|YP_004204327.1| DNA polymerase III subunit delta [Bacillus subtilis BSn5] gi|320018314|gb|ADV93300.1| DNA polymerase III subunit delta [Bacillus subtilis BSn5] Length = 347 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 H V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71 Query: 80 FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 ++++++++N L+ EKK + LE I + ++ + ++ + L Sbjct: 72 MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183 K +K ++ L QK+I EA + L+ + G + Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E+QKL ++ + IT VK ++ + I E+IN + K ++ + L Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ +F+L+ + E ++I + + P + + + R++++ Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301 Query: 304 NLVRETLHKID 314 +R + ++ Sbjct: 302 EELRSIIEQLA 312 >gi|300172815|ref|YP_003771980.1| DNA polymerase III subunit delta [Leuconostoc gasicomitatum LMG 18811] gi|299887193|emb|CBL91161.1| DNA polymerase III, delta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 333 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 128/307 (41%), Gaps = 21/307 (6%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +Q+ KN L++F ++ G++ LI Q + + + + ++ + Sbjct: 6 LQQQIKNKALANF-YVVTGNEDVLI-YRAQQAFRQLIQLADRDMNYSQFDLIDQALDE-- 61 Query: 70 FWNEINSTSLFSKKKIILIEN----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIK 122 N+ S F +++++++N + K + + L +++ K I +I++ N++K Sbjct: 62 VINDAMSMPFFGDRRVVVVQNPEFLTAKGKISVQNQEQLVKLLEKPIAENIVVFFINDLK 121 Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K + K K+ + + N+ I + L I ++A Q L+ Sbjct: 122 IDKRKKITKTLLKYAENIELP--ALNESQSRQAITQELQQRAYKIEQDALQELILRTNAH 179 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A +NEL KL +Y I+ + V ++ T I ++++A + + A+++ Sbjct: 180 YTAMKNELPKLIAYATHTKNISLEAVTTLVPKTLTATIFDLVDAVMTRQSKKALLIYRDL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + P+ + +F+LL +I +K +++ I P + + + L+ Sbjct: 240 LQNGEPALRINAVLTGQFRLLLQIAGLKGTEQDMSKQL------GIHPYRIKLAHQMLKK 293 Query: 301 WNKNLVR 307 + +R Sbjct: 294 YLLASLR 300 >gi|168705017|ref|ZP_02737294.1| DNA polymerase III subunit delta [Gemmata obscuriglobus UQM 2246] Length = 339 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 98/301 (32%), Gaps = 7/301 (2%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +Q + H V+ G + L + F++ + + + Sbjct: 4 LQFLSAKDAKRHPVYALVGDEDFLKRHARERIISIAIGDEDPSFAVSASGGDRLDFSTAR 63 Query: 70 FWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 NE+ + + ++++++ + LE K ++++ +N L Sbjct: 64 --NELETLPFLAPCRVLIVDAADKFVTENRQALEAYAAKPSAVGVLVLDVKTFPENTKLA 121 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEE-SLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K I C + + E + +K ++ EA ++L+ +G E Sbjct: 122 KAL---PDGAKIVCKAPPEYKIGAWCVEWAKTAHKKKLATEAAELLVERVGTSMGLLDQE 178 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L KL++ +I+ V ++ + + I++A GK A+ + A Sbjct: 179 LGKLANAVGAKPVISADDVDTLVGRSKAADVFRIMDAIGDGKPAQALSILQELFAEGEDP 238 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A++ + + L + + + + R ++ L+ + Sbjct: 239 MAVIGPLTAQLRKLATVGRLMVVEKLPMGSAMDAANVPKWEKARVNCEKQLKHLGGPRLL 298 Query: 308 E 308 + Sbjct: 299 K 299 >gi|326201894|ref|ZP_08191764.1| DNA polymerase III, delta subunit [Clostridium papyrosolvens DSM 2782] gi|325987689|gb|EGD48515.1| DNA polymerase III, delta subunit [Clostridium papyrosolvens DSM 2782] Length = 338 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 118/322 (36%), Gaps = 17/322 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG + LI +N I + + L +K+ +T + +F Sbjct: 17 NVYLFYGQEDYLIKYYMNAIGNLIVDEETKDLNYIYLEG---KKDTNTLIENCETMPVFC 73 Query: 82 KKKIILIEN------------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 KK+++ N S +K + L + I +I E+ K L Sbjct: 74 DKKLVISRNSGYFKSKKGGGEGSDKKSENNKLADYIENMPPYTCLIFVEQEVDKRIKLVN 133 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K V+ Y L+ + + +K+I A ++ N + NE+ Sbjct: 134 TIKKKGLVVEFD-YQKPA-DLVKWVVKVFKSHKKTIDTIAASYIVENSEYSMVELLNEID 191 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ ++ E I+ VK + T I ++ +A +G I A+ML + K P Sbjct: 192 KIVNFTGEIQNISIDDVKSVCTTTIKSRIFDLTDAVAEGNISKALMLLNDMAFLKEPMQK 251 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +++ +++ +++ ++ ++K+ Q + K L ++ I Sbjct: 252 IMYMIVRQIRMVYRMKLLKQQGMREDAAAKQMGLTPFVASKVLGLSRNMEIGVLEKAMYY 311 Query: 310 LHKIDHRIHLARKKKYLEKNII 331 ++D + + ++ Sbjct: 312 SLELDESVKTGKMTDRTAIELL 333 >gi|330867183|gb|EGH01892.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871071|gb|EGH05780.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 256 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 94/230 (40%), Gaps = 8/230 (3%) Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYPDNKIHLM 151 K L E + + +++I ++ + K + + +P + L Sbjct: 1 DKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWPVDVGQLP 60 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 I + L + +++A +++ A + G+ +A+ E++KL E+ IT + V+ + Sbjct: 61 QWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVA 119 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 D+ + + +A + G+ +A+ + + + + +L ++ + L + Sbjct: 120 DSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQ 178 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318 + +K+ I ++ ++ ++L+ + + L +ID +I Sbjct: 179 GVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 228 >gi|327439589|dbj|BAK15954.1| DNA polymerase III, delta subunit [Solibacillus silvestris StLB046] Length = 336 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 123/312 (39%), Gaps = 21/312 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E I Q K + ++ ++ I +E ++ FS Sbjct: 16 PVYLLVGEESYFVDETIKQLKAALQKNE----EAEIMTFDLNEQPIDYVIDEADTIPFFS 71 Query: 82 KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129 ++K+I+ +N S K L+ LE + I + + ++ + + K Sbjct: 72 ERKLIIAKNASFLKATEKGKEKIDHDLNRLESWLQHPTDTAITVFIAPYEKLDERKKVTK 131 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + K + I+ P N L ++ K+I+ EA LL +G + + + E++ Sbjct: 132 LM-KEKCTVLIAETPQNN-DLNVWVKNEAQQHGKAITDEAVGKLLEMVGPNMLQLQMEIE 189 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K++ Y ED IT + V+D++ T +++NA ++ A+ + L K Sbjct: 190 KMALYLGEDHEITRELVEDLVAKTLEHDAFKMLNAYLEHNQEEALKIYHDLLRQKEEPIK 249 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L+ + + I + + ++I ++ + I P + I+ + + + Sbjct: 250 LVGLLANNIRTMTNIFYL-QKKGYHQQQIAKQLK--IHPYRVQIISGQRNRPSDQRLLQA 306 Query: 310 LHKIDHRIHLAR 321 L+ + + Sbjct: 307 LYSLAEVDLQLK 318 >gi|28378747|ref|NP_785639.1| DNA polymerase III subunit delta [Lactobacillus plantarum WCFS1] gi|308180939|ref|YP_003925067.1| DNA polymerase III subunit delta [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271584|emb|CAD64489.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus plantarum WCFS1] gi|308046430|gb|ADN98973.1| DNA polymerase III subunit delta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 353 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 128/336 (38%), Gaps = 23/336 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I + + ++ S +V + G + L +Q K+ + + + + Sbjct: 1 MIAINAQQALKSIRNGDLASIYVIL------GTVDYLADQLKQAFTQQIPSEEQTMNVGS 54 Query: 61 LEIQKNI-STFWNEINSTSLFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNIC 110 +++ + ++ S F +++++ I + KK L L+ + Sbjct: 55 YDMETTPVAVALDDAMSAPFFGERRLVFINHPYFLTGENKKTKVDHDLASLQHYFEQPEP 114 Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + I++ + ++ L K +K + + + ++ ++ +L Q I + Sbjct: 115 STILVFMAPYEKLDARKKLVKTLKKQATTVEV--NQVSEAETQRYVQAALDEKQIRIDAD 172 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q L+ G +L KL Y + I V+ ++ + + +++N ++ Sbjct: 173 ALQELVNRTDGQLGLIMGQLPKLMIYAAQSQRIDLAAVQALVTKSLTQNVFDLVNDVLRY 232 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + +A+ L +A++ + L +F+LL ++ I + S + + + P Sbjct: 233 QTQSAVELYHELVAAQEAPLKINAILLGQFRLLLQVK-IMARAGYSQGSLASTLK--VHP 289 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + + +++R +++ +R + + + Sbjct: 290 YRVKLAMQTVRHFDQAALRAAYLGLLQTEVQMKTTQ 325 >gi|220929373|ref|YP_002506282.1| DNA polymerase III subunit delta [Clostridium cellulolyticum H10] gi|219999701|gb|ACL76302.1| DNA polymerase III, delta subunit [Clostridium cellulolyticum H10] Length = 339 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 119/323 (36%), Gaps = 18/323 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG + LI +N I + + L +K+ + + +FS Sbjct: 17 NVYLFYGQEDYLIKYYMNTIANLIVNEETKDLNYIYLEG---KKDTESLIENCETMPIFS 73 Query: 82 KKKIILIEN-------------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +KK+++ N S +K + L + I +I E+ K L Sbjct: 74 EKKLVIARNSGFFKSKKGGSEGGSDKKSGNNKLADYIENMPSYTCLIFVEQEVDKRIKLV 133 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 +K L + L+ + + +K+I A ++ N NE+ Sbjct: 134 NSVKK--KGLVVEFNYQKPADLVKWVVKVFKSYKKTIDNIAASYIVENSEYSMAELLNEI 191 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 K+ ++ + I+ + V+ + T I ++ +A +G I A+ML + + K P Sbjct: 192 DKIVNFIDDKQHISLEDVQSVCTKTIKSRIFDLTDAVAEGNISKALMLLNDMASLKEPMQ 251 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +++ +++ +++ ++ ++KE Q + K L + + I Sbjct: 252 KIMYMIVRQIRMVYRVKLLKEQGIREDAAAKQMGLTPFVASKVLRLSKYMEIGILERAMY 311 Query: 309 TLHKIDHRIHLARKKKYLEKNII 331 ++D I R ++ Sbjct: 312 YSLELDESIKTGRMTDRTAIELL 334 >gi|16079610|ref|NP_390434.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis str. 168] gi|221310480|ref|ZP_03592327.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis str. 168] gi|221314804|ref|ZP_03596609.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319726|ref|ZP_03601020.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis str. JH642] gi|221324004|ref|ZP_03605298.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis str. SMY] gi|1730987|sp|P54459|YQEN_BACSU RecName: Full=Uncharacterized protein yqeN gi|1303799|dbj|BAA12455.1| YqeN [Bacillus subtilis] gi|2635002|emb|CAB14498.1| DNA polymerase delta subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 347 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 H V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71 Query: 80 FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 ++++++++N L+ EKK + LE I + ++ + ++ + L Sbjct: 72 MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183 K +K ++ L QK+I EA + L+ + G + Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E+QKL ++ + IT VK ++ + I E+IN + K ++ + L Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ +F+L+ + E ++I + + P + + + R++++ Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301 Query: 304 NLVRETLHKID 314 +R + ++ Sbjct: 302 EELRLIIEQLA 312 >gi|291485004|dbj|BAI86079.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. natto BEST195] Length = 347 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 H V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71 Query: 80 FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 ++++++++N L+ EKK + LE I + ++ + ++ + L Sbjct: 72 MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183 K +K ++ L QK+I EA + L+ + G + Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E+QKL ++ + IT VK ++ + I E+IN + K ++ + L Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ +F+L+ + E ++I + + P + + + R++++ Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301 Query: 304 NLVRETLHKID 314 +R + ++ Sbjct: 302 EELRLIIEQLA 312 >gi|254556950|ref|YP_003063367.1| DNA polymerase III subunit delta [Lactobacillus plantarum JDM1] gi|300768265|ref|ZP_07078170.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|254045877|gb|ACT62670.1| DNA polymerase III subunit delta [Lactobacillus plantarum JDM1] gi|300494329|gb|EFK29492.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 353 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 128/336 (38%), Gaps = 23/336 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I + + ++ S +V + G + L +Q K+ + + + + Sbjct: 1 MIAINAQQALKSIRNGDLASIYVIL------GTVDYLADQLKQAFTQQIPSEEQTMNVGS 54 Query: 61 LEIQKNI-STFWNEINSTSLFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNIC 110 +++ + ++ S F +++++ I + KK L L+ + Sbjct: 55 YDMETTPVAVALDDAMSAPFFGERRLVFINHPYFLTGENKKTKVDHDLASLQHYFEQPEP 114 Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + I++ + ++ L K +K + + + ++ ++ +L Q I + Sbjct: 115 STILVFMAPYEKLDARKKLVKTLKKQATTVEV--NQVSEAETQRYVQAALDEKQIRIDAD 172 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q L+ G +L KL Y + I V+ ++ + + +++N ++ Sbjct: 173 ALQELVNRTDGQLGLIMGQLPKLMIYAAQSQRIDLAAVQALVTKSLTQNVFDLVNDVLRY 232 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + +A+ L +A++ + L +F+LL ++ I + S + + + P Sbjct: 233 QTQSAVELYHELVAAQEAPLKINAILLGQFRLLLQVK-IMARAGYSQGSLASTLK--VHP 289 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + + +++R +++ +R + + + Sbjct: 290 YRVKLAMQTVRHFDQAALRAAYLGLLQTEVQMKTTQ 325 >gi|319943189|ref|ZP_08017472.1| DNA-directed DNA polymerase III delta subunit [Lautropia mirabilis ATCC 51599] gi|319743731|gb|EFV96135.1| DNA-directed DNA polymerase III delta subunit [Lautropia mirabilis ATCC 51599] Length = 356 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 113/290 (38%), Gaps = 8/290 (2%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87 G + L+ E + + + ++ ++A + S STSLF+ +++I Sbjct: 27 GDELLLVIEAADLVRARARKLGFEEREVLDIDARF---DRSRLVEATQSTSLFASQRLID 83 Query: 88 IE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPD 145 + N +++ D L E++ + +++ S +++ T E +L + Sbjct: 84 LRLNTKPTRELGDALRELLPRLDDGTRVLVSSAHLERATTSTAWFEALAKQMLWVETPRI 143 Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + L + E L ++ + ++ G+ +A+ +Q+L L + + Sbjct: 144 DAGALGKWVTERLAAQKQQATPAVLALITERTEGNLLAAHQAIQRLGL-LLPPGELPAEA 202 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V +I+ D+ + +++A + G A+ +A A L + L +I Sbjct: 203 VAEIVLDSARFELFGLVDAALAGDPARAVRMARSLAAEDAAMPLLCWALADAIRKLLRIQ 262 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + ++ + ++ + + I++++LR + + L ++ Sbjct: 263 QALQIERVAPAQAMRAAG--VFGKREAIMRQALRRLDIQTLGHLLQQVAR 310 >gi|229062022|ref|ZP_04199347.1| DNA polymerase III, delta subunit [Bacillus cereus AH603] gi|228717174|gb|EEL68849.1| DNA polymerase III, delta subunit [Bacillus cereus AH603] Length = 336 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + ++ F Sbjct: 15 PLYVLYGTEAYFINETIKLITTYALEEEDREFNVVTYDLEE--AYLEDVVEDAHTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K+ILI++ L+ +K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVIEANAMQVQDVQKWIVSRADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|189425169|ref|YP_001952346.1| DNA polymerase III subunit delta [Geobacter lovleyi SZ] gi|189421428|gb|ACD95826.1| DNA polymerase III, delta subunit [Geobacter lovleyi SZ] Length = 336 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 101/295 (34%), Gaps = 14/295 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V+ FYG + L+ + + F+L + + + + + + +F++ Sbjct: 18 VYFFYGEEPFLVERAGRRVMEKAVDPAMKDFNLNIYYGADCKG--TEILDTSQTLPMFAE 75 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKN-ICNHIIIIKS-NEIKKNNTLRKIA-EKFTSVL 138 ++++++ + L + ++ + + +++ RK E Sbjct: 76 RRVVVVRQADKLPAATQEGLLPYLANPCPETCLLFLAAKPDLR-----RKFFSELKKQPG 130 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L I + K I ++L +G + ++++K + Y Sbjct: 131 TLEFKKLYDNKLGPFINAEAAVHGKKIDGAGAEMLGFMVGNNLQELVSQIEKAALYVGSR 190 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +I + VK I+ + E+ + + A+ L + + +L F Sbjct: 191 PVIGVEDVKAIVSQSKSFTAFELARFMGEKNLAKALATLQAMLQNGEEAVMILGALASHF 250 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + + +I + + + I ++ + + + + ++ + + ++ Sbjct: 251 RRIWRIRELLDQK-MPPADIGKQLKIHQFFLGEQ-VTQAKKY-PVTELEALFERL 302 >gi|108804355|ref|YP_644292.1| DNA polymerase III subunit delta [Rubrobacter xylanophilus DSM 9941] gi|108765598|gb|ABG04480.1| DNA polymerase III, delta subunit [Rubrobacter xylanophilus DSM 9941] Length = 306 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 6/253 (2%) Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK 117 + + S SLF ++++NL L + +++ Sbjct: 29 TFDAAEDAPEAVVSACGSYSLFGGGAFVVVKNLDAWNASQKAVLAGYLESPAEETDLVLL 88 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + L A++ V L+ I +++E + L Sbjct: 89 GGRLGARERLLAAAKRAGEVHVFE--RPTGRALVRWIVGRAQRMGLDLTEEVARELALRC 146 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D++ EL+KLS Y E + V+ + I ++A G+ A+ Sbjct: 147 SEDKLRLLGELEKLSLYVGEGRPAAREDVEALCPPDVEANIFAFVDALASGEPRRALPPL 206 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 + LA+ P + H ++F+L+ + + E E + ++ L+E Sbjct: 207 EGLLAAGEPPLRIAHMARRQFRLVLRARSLLERGVPRPELARELKVPP-FVARK--LEEQ 263 Query: 298 LRIWNKNLVRETL 310 R + + L Sbjct: 264 ARALGEEDLERAL 276 >gi|289550642|ref|YP_003471546.1| DNA polymerase III delta subunit [Staphylococcus lugdunensis HKU09-01] gi|289180174|gb|ADC87419.1| DNA polymerase III delta subunit [Staphylococcus lugdunensis HKU09-01] Length = 324 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 128/328 (39%), Gaps = 18/328 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG L+ + + + D F+ V N + +IST E + FS Sbjct: 4 NLIAVYGDVPELVEKQSLEIIQTYLQQERDDFNFVKFNL--YEHDISTIIEETLTLPFFS 61 Query: 82 KKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130 +KK IL++N + EK D L E I K +++II + N++ + L K Sbjct: 62 EKKAILVKNAYVFTGEKVPKDLSTNTDKLLEFIDKYDGDNLIIFEVYQNKLDERKKLTKA 121 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + I + + + I++ L K I ++A + + G + + EL+K Sbjct: 122 LKKHGQIKKIEQMSEE--DIKNWIQQQLHENYKDIKQDALNLFIELTGINFNIVQQELEK 179 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + + I +Q V II + + + + + AI L + K L Sbjct: 180 LMLFIGDRPTINKQDVSMIINRSLEQNVFLLTEYIQKNQKQKAINLVKDLIIMKEEPIKL 239 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++L + I+ + S ++I + P + + +R + N + + + Sbjct: 240 LALITSNYRLYYQCKILSQ-KGYSAQQIAKTVNA--HPYRVKLALGQIRHYQLNDILDII 296 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL I Sbjct: 297 NACAETDYKLKSSYMDKQLILELFILSI 324 >gi|163942079|ref|YP_001646963.1| DNA polymerase III subunit delta [Bacillus weihenstephanensis KBAB4] gi|229013544|ref|ZP_04170677.1| DNA polymerase III, delta subunit [Bacillus mycoides DSM 2048] gi|229135149|ref|ZP_04263949.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST196] gi|163864276|gb|ABY45335.1| DNA polymerase III, delta subunit [Bacillus weihenstephanensis KBAB4] gi|228648277|gb|EEL04312.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST196] gi|228747704|gb|EEL97574.1| DNA polymerase III, delta subunit [Bacillus mycoides DSM 2048] Length = 336 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + ++ F Sbjct: 15 PLYVLYGTEAYFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDAHTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K+ILI++ L+ +K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVIEANAMQVQDVQKWIVSRADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|332160861|ref|YP_004297438.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665091|gb|ADZ41735.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 344 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 121/311 (38%), Gaps = 15/311 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G++ L+ E + ++ + + + FS L+A +NI + + SLF+ Sbjct: 21 YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++ +L+ + + + L ++ + ++I+++N++ K + + + Sbjct: 77 RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L + +I A Q+L G+ +A L++LS D Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLNIDNAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V+ + D ++A + GK A + LL ++ Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + E + + + + + +R ++ ++L+ + +++ + + Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQI--E 309 Query: 320 ARKKKYLEKNI 330 R K+ ++I Sbjct: 310 VRLKQDYGQSI 320 >gi|30264394|ref|NP_846771.1| DNA polymerase III subunit delta [Bacillus anthracis str. Ames] gi|47529845|ref|YP_021194.1| DNA polymerase III subunit delta [Bacillus anthracis str. 'Ames Ancestor'] gi|49187218|ref|YP_030470.1| DNA polymerase III subunit delta [Bacillus anthracis str. Sterne] gi|118479490|ref|YP_896641.1| DNA polymerase III subunit delta [Bacillus thuringiensis str. Al Hakam] gi|165872032|ref|ZP_02216672.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0488] gi|167634517|ref|ZP_02392837.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0442] gi|167638622|ref|ZP_02396898.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0193] gi|170687368|ref|ZP_02878585.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0465] gi|170707369|ref|ZP_02897823.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0389] gi|177653266|ref|ZP_02935518.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0174] gi|190567059|ref|ZP_03019975.1| DNA polymerase III, delta subunit [Bacillus anthracis Tsiankovskii-I] gi|196034325|ref|ZP_03101734.1| DNA polymerase III, delta subunit [Bacillus cereus W] gi|196044855|ref|ZP_03112089.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108] gi|218905460|ref|YP_002453294.1| DNA polymerase III, delta subunit [Bacillus cereus AH820] gi|225866304|ref|YP_002751682.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB102] gi|227817099|ref|YP_002817108.1| DNA polymerase III, delta subunit [Bacillus anthracis str. CDC 684] gi|228916955|ref|ZP_04080516.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929367|ref|ZP_04092390.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935643|ref|ZP_04098457.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948036|ref|ZP_04110321.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123862|ref|ZP_04253055.1| DNA polymerase III, delta subunit [Bacillus cereus 95/8201] gi|229186563|ref|ZP_04313724.1| DNA polymerase III, delta subunit [Bacillus cereus BGSC 6E1] gi|229602816|ref|YP_002868612.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0248] gi|254684080|ref|ZP_05147940.1| DNA polymerase III subunit delta [Bacillus anthracis str. CNEVA-9066] gi|254721914|ref|ZP_05183703.1| DNA polymerase III subunit delta [Bacillus anthracis str. A1055] gi|254736428|ref|ZP_05194134.1| DNA polymerase III subunit delta [Bacillus anthracis str. Western North America USA6153] gi|254741466|ref|ZP_05199153.1| DNA polymerase III subunit delta [Bacillus anthracis str. Kruger B] gi|254750904|ref|ZP_05202943.1| DNA polymerase III subunit delta [Bacillus anthracis str. Vollum] gi|254757768|ref|ZP_05209795.1| DNA polymerase III subunit delta [Bacillus anthracis str. Australia 94] gi|301055815|ref|YP_003794026.1| putative DNA polymerase III subunit delta [Bacillus anthracis CI] gi|30259052|gb|AAP28257.1| DNA polymerase III, delta subunit [Bacillus anthracis str. Ames] gi|47504993|gb|AAT33669.1| DNA polymerase III, delta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49181145|gb|AAT56521.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|118418715|gb|ABK87134.1| DNA polymerase III, delta subunit [Bacillus thuringiensis str. Al Hakam] gi|164712163|gb|EDR17700.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0488] gi|167513470|gb|EDR88840.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0193] gi|167529969|gb|EDR92704.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0442] gi|170127613|gb|EDS96486.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0389] gi|170668563|gb|EDT19309.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0465] gi|172081548|gb|EDT66620.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0174] gi|190562050|gb|EDV16019.1| DNA polymerase III, delta subunit [Bacillus anthracis Tsiankovskii-I] gi|195992867|gb|EDX56826.1| DNA polymerase III, delta subunit [Bacillus cereus W] gi|196024343|gb|EDX63016.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108] gi|218539074|gb|ACK91472.1| DNA polymerase III, delta subunit [Bacillus cereus AH820] gi|225788938|gb|ACO29155.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB102] gi|227006424|gb|ACP16167.1| DNA polymerase III, delta subunit [Bacillus anthracis str. CDC 684] gi|228596822|gb|EEK54481.1| DNA polymerase III, delta subunit [Bacillus cereus BGSC 6E1] gi|228659576|gb|EEL15223.1| DNA polymerase III, delta subunit [Bacillus cereus 95/8201] gi|228811622|gb|EEM57958.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824003|gb|EEM69821.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830273|gb|EEM75887.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842676|gb|EEM87763.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267224|gb|ACQ48861.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0248] gi|300377984|gb|ADK06888.1| possible DNA polymerase III, delta subunit [Bacillus cereus biovar anthracis str. CI] Length = 336 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|314933759|ref|ZP_07841124.1| DNA polymerase III, delta subunit [Staphylococcus caprae C87] gi|313653909|gb|EFS17666.1| DNA polymerase III, delta subunit [Staphylococcus caprae C87] Length = 324 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 112/299 (37%), Gaps = 18/299 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + ++ N D F+ V N + +++ E + Sbjct: 1 MSDNIITIYGEVPELVEKKSSEIVNNYLGQEKDDFNYVKFNM--YENDLTPIIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK I+++N + EK + L E I K +++I+ + N++ + L Sbjct: 59 FFSDKKAIVVKNAYIFTGEKGAKELNHNPEQLMEFIEKYDGDNLILFEVYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + + + + + I+ L K I ++A + + G + E Sbjct: 119 TKSLKKNAQLKKVEQMSEEE--IKKWIQNKLHENYKDIKQDALNLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L KL Y + + + V II + + + +GK AI L + + K Sbjct: 177 LSKLMLYIRDRPTVNKDDVNQIINRSLEQNVFLLTEYIQKGKKDKAIQLLNDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL + L I E S ++I + + P + + R + N + Sbjct: 237 IKLLALITSNY-RLYYQSKILEQKGYSGQQIAKTV--SAHPYRVKLALNQARYYQLNDL 292 >gi|310643089|ref|YP_003947847.1| DNA polymerase iii, delta subunit [Paenibacillus polymyxa SC2] gi|309248039|gb|ADO57606.1| DNA polymerase III, delta subunit [Paenibacillus polymyxa SC2] Length = 364 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 117/305 (38%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YGS+K + + ++ K+ + H F+++ + E I + + Sbjct: 38 PVYLLYGSEKYQMKQFVDMLKEKVVEEEHRDFAIISYDLTET--PIEVVVEDAETAPFLV 95 Query: 82 KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 KK+I++ + S L+ L + +I+ +++ ++ + + K Sbjct: 96 PKKLIIVRDTSVFAAGKDNGKIEHRLETLLTYMDNPTDYSVIVFTVQAEKLDERKKIVKK 155 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + SV+A + P L+ + + + ++ A + L+ G + E+ K Sbjct: 156 LKSDASVIAFA--PMGGDDLVAWVHKRAAEREVQLAAGAAERLIQYTGTGLQSLAAEIDK 213 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y I+ ++ ++ + ++ ++ A+ + L K + Sbjct: 214 LCLYAGAQGTISSADIESLVPRNTEQNVFAMVEDLANLRLDKALSIFYELLKQKEEPIKI 273 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++F + +KE + S+ + ++ ++ P + + R + +R+ L Sbjct: 274 AALITRQF---RIMLQVKELAGQSYSQQQIASQLSLHPYGVKVAGDQARRFRPEQLRQLL 330 Query: 311 HKIDH 315 +++ Sbjct: 331 YELGE 335 >gi|49478609|ref|YP_038378.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330165|gb|AAT60811.1| possible DNA polymerase III, delta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 336 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|117919448|ref|YP_868640.1| DNA polymerase III subunit delta [Shewanella sp. ANA-3] gi|117611780|gb|ABK47234.1| DNA polymerase III, delta subunit [Shewanella sp. ANA-3] Length = 343 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 107/306 (34%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L H ++ +G D L+ + I Q K F V E N Sbjct: 6 DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 E S SLFS ++II + N L+ ++ + ++I++ ++ Sbjct: 60 GDLTQEWQSMSLFSSRRIIELTLPNAKPGADGSAALQALLQTPNPDVLLILEGPKLASEQ 119 Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + S+ + + C ++ + + ++ +A+ +L G+ +A+ Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPESDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L I + D + ++ +A + + +A + Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ QLL + + + K I ++ + Q +L+ + Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLT 295 Query: 305 LVRETL 310 + L Sbjct: 296 QIEHML 301 >gi|116749517|ref|YP_846204.1| DNA polymerase III subunit delta [Syntrophobacter fumaroxidans MPOB] gi|116698581|gb|ABK17769.1| DNA polymerase III, delta subunit [Syntrophobacter fumaroxidans MPOB] Length = 332 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 111/326 (34%), Gaps = 19/326 (5%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + +F ++ + V+ G + LI E + + I+ F+ A E Sbjct: 3 ADEFFRRLEREPLS--PVYFLVGEAELLIEEAWKRLVEKIASGGARAFNGERYQAKEYTA 60 Query: 66 NISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + + +F+ K+++++ ++ ++ L + + +++ + Sbjct: 61 --AEMVAGLRALPMFAPKRLLMVRHIENWPEEQRKILLSYLARPFPTACLVLT---LSGK 115 Query: 125 NTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 L KI E + + + + ++ L + + K +S +A L +G D Sbjct: 116 KGLEKI-EAAVTAVGTVVHLHGPSERELPRWLRDRARQRGKELSFQAAMHLAEQVGTDLQ 174 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +EL+KL +Y ++ I V + I E+++A + K + + LA Sbjct: 175 RLESELEKLITYVGDNAAIEADDVLQAVSAQRGHTIFELLDAVAERKSGRTLAMLRSLLA 234 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI----IQKTEKNIIPMKRNILQESL 298 +L + + L ++ E + I + + + E+ Sbjct: 235 EGQAPLQVLAMIARHVRQLWQVKSALEEGMPLPQAARKFNIHQFVAGKHARQAPLFSEA- 293 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKK 324 + + + D + Sbjct: 294 ---DLYRMHRAICDTDFALKSTGTNP 316 >gi|24372755|ref|NP_716797.1| DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] gi|24346830|gb|AAN54242.1|AE015561_2 DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] Length = 343 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 110/307 (35%), Gaps = 18/307 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L H ++ +G D L+ + I Q K F V E N Sbjct: 6 DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 E + SLFS ++II + + L+ ++ + ++I++ ++ Sbjct: 60 GDLTQEWQAMSLFSSRRIIELTLPSAKPGADGSAALQSLLQTPSPDVLLILEGPKLASEQ 119 Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + S+ + + C ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L I + D + ++ +A + + +A + Sbjct: 180 DQAMQLLQLLS-PSKPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNK 303 LL ++ QLL + + + + K+ I ++ + Q +L+ + Sbjct: 239 TAMPILLWALFKELQLLLSLKSEQAQGSP----LNSLFGKHRIWDKRKPLYQTALQRLSL 294 Query: 304 NLVRETL 310 + L Sbjct: 295 AQIEHML 301 >gi|123443213|ref|YP_001007187.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090174|emb|CAL13037.1| DNA polymerase III, delta subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 344 Score = 99.3 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 120/311 (38%), Gaps = 15/311 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G++ L+ E + ++ + + + FS L+A +NI + + SLF+ Sbjct: 21 YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++ +L+ + + + L ++ + ++I+++N++ K + + + Sbjct: 77 RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L + I A Q+L G+ +A L++LS D Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLDIDDAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V+ + D ++A + GK A + LL ++ Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + E + + + + + +R ++ ++L+ + +++ + + Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQ--ME 309 Query: 320 ARKKKYLEKNI 330 R K+ ++I Sbjct: 310 VRLKQDYGQSI 320 >gi|52141181|ref|YP_085649.1| DNA polymerase III subunit delta [Bacillus cereus E33L] gi|51974650|gb|AAU16200.1| possible DNA polymerase III, delta subunit [Bacillus cereus E33L] Length = 336 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|315658138|ref|ZP_07911010.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus lugdunensis M23590] gi|315496467|gb|EFU84790.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus lugdunensis M23590] Length = 324 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 128/328 (39%), Gaps = 18/328 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG L+ + + + D F+ V N + +IST E + FS Sbjct: 4 NLIAVYGDVPELVEKQSLEIIQTYLQQERDDFNFVKFNL--YEHDISTIIEETLTLPFFS 61 Query: 82 KKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130 +KK IL++N + EK D L E I K +++II + N++ + L K Sbjct: 62 EKKAILVKNAYVFTGEKVPKDLSTNTDKLLEFIDKYDGDNLIIFEVYQNKLDERKKLTKA 121 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + I + + + I++ L K I ++A + + G + + EL+K Sbjct: 122 LKKHGQIKKIEQMSEE--DIKNWIQQQLHENYKDIKQDALNLFIELTGINFNIVQQELEK 179 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + + I +Q V II + + + + + AI L + K L Sbjct: 180 LMLFIGDRPTINKQDVSIIINRSLEQNVFLLTEYIQKNQKQKAINLVKDLIIMKEEPIKL 239 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++L + I+ + S ++I + P + + +R + N + + + Sbjct: 240 LALITSNYRLYYQCKILSQ-KGYSAQQIAKTVNA--HPYRVKLALGQIRHYQLNDILDII 296 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL I Sbjct: 297 NACAETDYKLKSSYMDKQLILELFILSI 324 >gi|304410298|ref|ZP_07391917.1| DNA polymerase III, delta subunit [Shewanella baltica OS183] gi|307301991|ref|ZP_07581749.1| DNA polymerase III, delta subunit [Shewanella baltica BA175] gi|304351707|gb|EFM16106.1| DNA polymerase III, delta subunit [Shewanella baltica OS183] gi|306914029|gb|EFN44450.1| DNA polymerase III, delta subunit [Shewanella baltica BA175] Length = 343 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L ++ +G D LI + I QF K V L E N Sbjct: 6 DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + E + SLFS K++I + + L+ ++ + ++II+ ++ Sbjct: 60 NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPHPDMLLIIEGPKLANEQ 119 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + + + C M ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDAHGMYLPCTTPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L ++ + D + ++ +A + K +A + Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ LL + + ++ + K I ++ + Q +L+ + Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVAQSALWSKHR--IWDKRKPLYQAALQRLSLE 295 Query: 305 LVRETL 310 + L Sbjct: 296 QLEHML 301 >gi|229198451|ref|ZP_04325155.1| DNA polymerase III, delta subunit [Bacillus cereus m1293] gi|228584954|gb|EEK43068.1| DNA polymerase III, delta subunit [Bacillus cereus m1293] Length = 336 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEALKKVIMELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|160915316|ref|ZP_02077529.1| hypothetical protein EUBDOL_01325 [Eubacterium dolichum DSM 3991] gi|158433115|gb|EDP11404.1| hypothetical protein EUBDOL_01325 [Eubacterium dolichum DSM 3991] Length = 316 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 130/320 (40%), Gaps = 19/320 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG++ L+ E + K + D + VV +A + + T + + FS+ Sbjct: 3 YVLYGTESYLLKE--SLAKILLQHGIQDEMNKVVYDAR--KTDAYTVMEDAQTYPFFSEY 58 Query: 84 KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K I+++N S + + E +K I+I +K + +KI +K + Sbjct: 59 KAIIVQNANFLSPSDDTNWDLHVLEEYLKQPLESTILIFIGNFEKLDARKKIVKKLQSVC 118 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++ ++E L SI + A+++LL+ + D + +NEL KL Y Sbjct: 119 KVLQFRKLDEQGKRRFVDEQLKKRSISIERNARELLLSRMPFDILMIQNELSKLELY--- 175 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 IT + V I+ + +++NA ++ +I A + + + L+ + Sbjct: 176 GDTITTEVVSSIVTRPLEDDVFQLVNAVVEKRIKEAFHIWEDLSTLNKDAVFLIALLAGQ 235 Query: 258 FQLLEKIHIIKECSNISFE-KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F+ L ++ + + E + P + +++ + N + L ++ Sbjct: 236 FRFLYQVRELLDEGKQQKEITAVLGA----HPYRVQRSIQTVMHLSTNAILNILERL-AT 290 Query: 317 IHLARKKKYLEKNIIFQTIL 336 + K L+KN+ F+ L Sbjct: 291 LDQQIKSGKLDKNLGFEMFL 310 >gi|114046566|ref|YP_737116.1| DNA polymerase III subunit delta [Shewanella sp. MR-7] gi|113888008|gb|ABI42059.1| DNA polymerase III, delta subunit [Shewanella sp. MR-7] Length = 343 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 107/306 (34%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L H ++ +G D L+ + I Q K F V E N Sbjct: 6 DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 E S SLFS ++II + N L+ ++ + +++++ ++ Sbjct: 60 GDLTQEWQSMSLFSSRRIIELTLPNAKPGADGSAALQALLQTPNPDVLLLLEGPKLASEQ 119 Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + S+ + + C ++ + + ++ +A+ +L G+ +A+ Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L I + D + ++ +A + + +A + Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ QLL + + + K I ++ + Q +L+ + Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLT 295 Query: 305 LVRETL 310 + L Sbjct: 296 QIEHML 301 >gi|318604763|emb|CBY26261.1| DNA polymerase III delta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 344 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 120/311 (38%), Gaps = 15/311 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G++ L+ E + ++ + + + FS L+A +NI + + SLF+ Sbjct: 21 YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++ +L+ + + + L ++ + ++I+++N++ K + + + Sbjct: 77 RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L + I A Q+L G+ +A L++LS D Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLDIDDAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V+ + D ++A + GK A + LL ++ Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + E + + + + + +R ++ ++L+ + +++ + + Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQI--E 309 Query: 320 ARKKKYLEKNI 330 R K+ ++I Sbjct: 310 VRLKQDYGQSI 320 >gi|34101816|gb|AAQ58184.1| DNA-directed DNA polymerase, delta subunit [Chromobacterium violaceum ATCC 12472] Length = 313 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 95/259 (36%), Gaps = 10/259 (3%) Query: 66 NISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + S + ++S SLF+ K+ I I + ++ L+ + + + +I ++ K Sbjct: 39 DWSQLTDSMSSVSLFASLKLLEIRIPGGKPGTEGVEALQRLAADPPQDTVTLITLPKLDK 98 Query: 124 NNTLRKIAEKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + + P + L I L + + +A + + G+ + Sbjct: 99 AQQQSKWFTALDKIAQVVEARPVGRAELPGWISRRLKAQGQQLGADALAFFVDRVEGNLL 158 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A+R E+ KL+ ++ ++ + + + ++ A + G + D +A Sbjct: 159 AARQEVDKLAL-LYPKGELSLADLQAAVANVARFDVFQLSEAWLAGDTPRLTRMLDGLMA 217 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L + ++L K+ + + ++ + K+ + + +LR Sbjct: 218 EGEAPVLVLWSLAEDVRMLLKLRQGLKDGRQPRDMA-RELR--LWGEKQKLAEPALRRIG 274 Query: 303 KNLVRETLH---KIDHRIH 318 + L +ID +I Sbjct: 275 PRKLMAALSECARIDRQIK 293 >gi|258516400|ref|YP_003192622.1| DNA polymerase III, delta subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780105|gb|ACV63999.1| DNA polymerase III, delta subunit [Desulfotomaculum acetoxidans DSM 771] Length = 378 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 48/348 (13%), Positives = 121/348 (34%), Gaps = 51/348 (14%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L+ E I FKK + F+ ++N E + + + Sbjct: 18 PVYLLYGQEVYLLNEAIKNFKKIVLNEETGDFNFDLINGEETT--PEDIVSLAQNLPFMA 75 Query: 82 KKKIILIEN-------------------------------------------LSTEKKVL 98 +K+++++++ + + Sbjct: 76 EKRLVVVKDFPAFNAPKNKAPEQEAAGEEEQAAGEKENISVDGKGKRAKSKSTADDASRY 135 Query: 99 DCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 L + I K + ++ S + K L + K V I K L + + Sbjct: 136 KALLQYIEKPSSDTCLLFTFSGSVDKRKKLVQAINKTGEV--IDFVLLKKQDLRKWLLQQ 193 Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217 K+ EA ++ L + D E++KL +Y + +IT++ ++ ++ L Sbjct: 194 AKKAGKTFQPEALELFLTGVKNDLYRISAEVKKLFNYTDDRAIITKEDIEQVVISQIDLS 253 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 I + +A + + +A+ L + P +L ++F+LL + ++E + E Sbjct: 254 IFAVADAIGEKRCSDALRGIRDLLLYREPPQKILVMIYRQFRLLFQYKALQEEGDSQSEI 313 Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + P + + ++ + + ++ + + + Sbjct: 314 ---QAKMKLHPYVAGKIARQAKNFSIEELYKAMYDLSEIDAATKSGQA 358 >gi|148241175|ref|YP_001226332.1| DNA polymerase III subunit delta [Synechococcus sp. RCC307] gi|147849485|emb|CAK26979.1| DNA polymerase III, delta subunit [Synechococcus sp. RCC307] Length = 321 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 112/289 (38%), Gaps = 20/289 (6%) Query: 22 FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++G D E + I +L L+ + NE + Sbjct: 2 PIHLYWGDDA-TARERAVQELIDQIIEPAWVSLNLSRLDGSSADQAAQAL-NEARTAPFG 59 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNE----IKKNNTLRKIA 131 +++L++ ++ L E + +H++++ + + ++ LRK+A Sbjct: 60 GGGRVVLLQRSPFCERCPAELAEQLESALPLIPEQSHLVLVSAGKPDARLRTTKALRKVA 119 Query: 132 EKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E+ L AI + L++L++ S Q + A ++L +G D EL+K Sbjct: 120 EEKKFPLPAIW----DGAGLIELVQRSAAAAQLQLEPAAAELLADTIGNDSSRLAGELEK 175 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ YC + + + VK + + + A + G + A+ D +A+ P L Sbjct: 176 LALYC-GEKAVDVEAVKALAGPAQHNAL-AVGEALLAGDVGGALTQIDGLMAANEPPLRL 233 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + + + + + ++++ I + P + ++++ LR Sbjct: 234 VASLVSQLRGWLWLTLLEQSGEQDPMVIAKAAGIG-NPKRIYVMRKQLR 281 >gi|161594061|ref|NP_900177.2| DNA polymerase III subunit delta [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 95/259 (36%), Gaps = 10/259 (3%) Query: 66 NISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + S + ++S SLF+ K+ I I + ++ L+ + + + +I ++ K Sbjct: 60 DWSQLTDSMSSVSLFASLKLLEIRIPGGKPGTEGVEALQRLAADPPQDTVTLITLPKLDK 119 Query: 124 NNTLRKIAEKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + + P + L I L + + +A + + G+ + Sbjct: 120 AQQQSKWFTALDKIAQVVEARPVGRAELPGWISRRLKAQGQQLGADALAFFVDRVEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A+R E+ KL+ ++ ++ + + + ++ A + G + D +A Sbjct: 180 AARQEVDKLAL-LYPKGELSLADLQAAVANVARFDVFQLSEAWLAGDTPRLTRMLDGLMA 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L + ++L K+ + + ++ + K+ + + +LR Sbjct: 239 EGEAPVLVLWSLAEDVRMLLKLRQGLKDGRQPRDMA-RELR--LWGEKQKLAEPALRRIG 295 Query: 303 KNLVRETLH---KIDHRIH 318 + L +ID +I Sbjct: 296 PRKLMAALSECARIDRQIK 314 >gi|47569319|ref|ZP_00240003.1| DNA polymerase III, delta subunit [Bacillus cereus G9241] gi|229157938|ref|ZP_04286010.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 4342] gi|47553990|gb|EAL12357.1| DNA polymerase III, delta subunit [Bacillus cereus G9241] gi|228625498|gb|EEK82253.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 4342] Length = 336 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|325104230|ref|YP_004273884.1| DNA polymerase III, delta subunit [Pedobacter saltans DSM 12145] gi|324973078|gb|ADY52062.1| DNA polymerase III, delta subunit [Pedobacter saltans DSM 12145] Length = 334 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 102/263 (38%), Gaps = 16/263 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + I + + + F++ + + + N + S Sbjct: 17 PIYLLHGEESYYIDLIAEALENTVLSEAERGFNMSIFYGKDT--DPVNVLNAAKRFPMMS 74 Query: 82 KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFT-- 135 ++IL++ K K+ + + K + + I+I+ K + K + K+ EK Sbjct: 75 DYQVILVKEAQDLKFDKIAESFQAYCEKPLQSTILILCHKHGKFDKRKKVYKVIEKTGLV 134 Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I Y + I++ + I+ +A Q+L LG D NE++KL Sbjct: 135 FESATI--YE---NKIPAWIDDFVKSRGYHINPKASQLLAEYLGNDLSKISNEVEKLMLN 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 + I + ++D I + + E+ +A + I A + ++F A+ P ++ Sbjct: 190 VPQGQEIGTKEIQDNIGISKEFNVFELQSALGKKDILKANQIINYFEANPKSNPLVLVMG 249 Query: 253 GFLQKFQLLEKIHIIKECSNISF 275 F + K H +++ S + Sbjct: 250 NLYTYFSKILKYHYLQDKSEAAR 272 >gi|110834810|ref|YP_693669.1| DNA polymerase III subunit delta [Alcanivorax borkumensis SK2] gi|110647921|emb|CAL17397.1| DNA polymerase III, delta subunit [Alcanivorax borkumensis SK2] Length = 337 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 107/267 (40%), Gaps = 16/267 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + ELI+ ++ D + + + + NE S SLF Sbjct: 18 PVYLVAGDEPLQQGELIDDLRRAARDQGFDERQRF---SSDTGIDWNALLNESQSMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIII----KNICNHIIIIKSNEIKKN----NTLRKIA 131 ++I+ ++ + +K L +++ + + +++I+ + + + + K Sbjct: 75 GRRILELVLNDKRPDKTGSQILRDVLASLKGEASSDTLLLIRCSRLDRRKDWNSAWVKAL 134 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + I +P L + ++E L S++A +L+ G+ +A+ E+ KL Sbjct: 135 D--EMGAVIEVWPVEGNGLRNWLQERLTSRGLRASEDALALLIERSEGNLLAAAQEVDKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + +ED + + V+ + D+ ++ +AT QG + + A + LL Sbjct: 193 AL-LVEDGQVGPEDVQQAVGDSSRYSPFDLTDATAQGDSQRVMHIIQTLRAEGVEPPVLL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI 278 + +LL+ + + +++ Sbjct: 252 WALSRDIRLLDGMLGGGPPPRLPPQRV 278 >gi|119944942|ref|YP_942622.1| DNA polymerase III, delta subunit [Psychromonas ingrahamii 37] gi|119863546|gb|ABM03023.1| DNA polymerase III, delta subunit [Psychromonas ingrahamii 37] Length = 331 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 115/300 (38%), Gaps = 17/300 (5%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL-EIQKNISTFWNEINSTSLFSKK 83 + +G + L E Q +K + L L+ + + + E + SLFS+K Sbjct: 21 LIFGDEALLCLEATEQIQKAAKKQGY----LEKLSFSLDGNFDNDLIFGEFQTLSLFSEK 76 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEKFTSVLA 139 KIIL+ T K+ + EI + ++I++ ++ + + + +K V Sbjct: 77 KIILLTLTKTNKENTAFIREITPLLHPDILLILQGPKLNNQQMSSVWFKTLEQKGIFVAT 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + L K+ L + G+ +A++ E +KL+ Sbjct: 137 ---NLPQAHRFPQWVFQRLKALNLHADKDIIDYLCLHFEGNLLAAKQEFEKLAL-LYPKQ 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T Q V+ I + + + I++ + G ++ + A L + Q Sbjct: 193 NLTLQQVEQSITTHNHFNLFQWIDSLLAGDQMRSVRILKQLKAEGTELLLLCATLNNEVQ 252 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K+ + +++ ++ + + + P K+ +++++L N N + + + I Sbjct: 253 KLLKLSYQSQQHSLT--QLFNQQQPKLWPAKQQLIRDALTRLNINKLEKMI--IQCAEIE 308 >gi|269215624|ref|ZP_06159478.1| DNA polymerase III, delta subunit [Slackia exigua ATCC 700122] gi|269131111|gb|EEZ62186.1| DNA polymerase III, delta subunit [Slackia exigua ATCC 700122] Length = 318 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%) Query: 22 FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G D+ L E + + + N++ F+ L+ E + N+ Sbjct: 6 PAYLIVGEDE-LKRERVLERLQANVAARGDIDFN---LDVFESAAEGADVIAACNTLPFA 61 Query: 81 SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 S +++L+ + +K+ + L E + + ++ + ++ K+ L K A K Sbjct: 62 SSVRLVLVRGVDAMKKQSVSALVEYLGNPSPSTVLALVGAKVPKSAALYKAASKLGKSAV 121 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I C P + L + + +IS A L+ +G + +A EL K++ Sbjct: 122 IDCAPLKRHELPSRVRDMAATHGIAISLAAATRLVELVGENTVALDAELHKIALAHPSKA 181 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I ++ ++ T + ++A + + L +L + + + Sbjct: 182 PIGASAIEALVAHTSKTKYWDFVDAFASRDLPRCLALYAHL---DDSPVIMLARCVARLR 238 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L + ++Q+ +N R+W ++E L Sbjct: 239 ELIMWRALAARGGSLPNDLVQRLGVPA-WKLKNH-ASWTRLWTAEELKEALIAARDADRA 296 Query: 320 ARKKKYLEKNII 331 + + + Sbjct: 297 MKSGADQDDAFL 308 >gi|229019548|ref|ZP_04176364.1| DNA polymerase III, delta subunit [Bacillus cereus AH1273] gi|229025789|ref|ZP_04182188.1| DNA polymerase III, delta subunit [Bacillus cereus AH1272] gi|228735497|gb|EEL86093.1| DNA polymerase III, delta subunit [Bacillus cereus AH1272] gi|228741714|gb|EEL91898.1| DNA polymerase III, delta subunit [Bacillus cereus AH1273] Length = 336 Score = 98.5 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 120/322 (37%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAYFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +K+ILI++ L+ +K+ L+ LEE I + I++ + K + + Sbjct: 73 DRKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + + I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWVVSRAEEAHVYIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITSKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ ++ + ++ Sbjct: 253 VSQFRLLNQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKRVILELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|196039162|ref|ZP_03106468.1| DNA polymerase III, delta subunit [Bacillus cereus NVH0597-99] gi|196029789|gb|EDX68390.1| DNA polymerase III, delta subunit [Bacillus cereus NVH0597-99] Length = 336 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 124/321 (38%), Gaps = 13/321 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ I E I F++V + E + + + F + Sbjct: 16 LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73 Query: 83 KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 +K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 74 RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 133 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 134 TADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 193 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT + V +++ + + + ++ I A+ + D + LL + Sbjct: 194 GMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLV 253 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 254 SQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 310 Query: 316 RIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 311 ADY-SMKTGKMDKKLVLEFFL 330 >gi|229174998|ref|ZP_04302517.1| DNA polymerase III, delta subunit [Bacillus cereus MM3] gi|228608459|gb|EEK65762.1| DNA polymerase III, delta subunit [Bacillus cereus MM3] Length = 336 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG++ I E I F++V + E + + + F Sbjct: 15 PVYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K+ILI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVILIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVGELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|326796282|ref|YP_004314102.1| DNA polymerase III subunit delta [Marinomonas mediterranea MMB-1] gi|326547046|gb|ADZ92266.1| DNA polymerase III, delta subunit [Marinomonas mediterranea MMB-1] Length = 346 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 117/307 (38%), Gaps = 11/307 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + Q+ K L ++I G + L E + ++ + V +A Sbjct: 2 KVRPDQLDQQLAKGLA---PIYIVSGDETLLCQEAADSVRRAAKEQGIEERLRFVADAQF 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 ++ NE + SLFS +++ I+ +K L ++ +++I++ ++ Sbjct: 59 DWQD---VINESQALSLFSSRRLFDIQIDKLGEKHSKALTQLGQSLSDDNVILLSFPKVD 115 Query: 123 KNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K + + + + +P + L +++ +IS++A ++ G+ Sbjct: 116 ARTQKAKWFSQLESQGVFVQIWPIDTNKLPAWVQQRAKKFSLTISQDAAALICERGEGNL 175 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +A EL+KL E I + V + + D+ I ++ + + GKI A+ + Sbjct: 176 LAISQELEKLVLSQGEGAQIDLETVANSVTDSSRYSIYDLSDRLLAGKIKEALHCLHQLV 235 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 A + +L ++ Q L ++ + S+ + I + + + + Sbjct: 236 AEGVEPTIILWLLNREVQTLVDLYHASKTSDFRA--ACRSLR--IWDKRIPMYERAYARH 291 Query: 302 NKNLVRE 308 N + + Sbjct: 292 NPSTLPY 298 >gi|206976058|ref|ZP_03236968.1| DNA polymerase III, delta subunit [Bacillus cereus H3081.97] gi|217961813|ref|YP_002340383.1| DNA polymerase III subunit delta [Bacillus cereus AH187] gi|222097768|ref|YP_002531825.1| DNA polymerase iii subunit delta [Bacillus cereus Q1] gi|229141061|ref|ZP_04269603.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST26] gi|206745810|gb|EDZ57207.1| DNA polymerase III, delta subunit [Bacillus cereus H3081.97] gi|217067837|gb|ACJ82087.1| DNA polymerase III, delta subunit [Bacillus cereus AH187] gi|221241826|gb|ACM14536.1| DNA polymerase III, delta subunit [Bacillus cereus Q1] gi|228642339|gb|EEK98628.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST26] Length = 336 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIMELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|113969339|ref|YP_733132.1| DNA polymerase III subunit delta [Shewanella sp. MR-4] gi|113884023|gb|ABI38075.1| DNA polymerase III, delta subunit [Shewanella sp. MR-4] Length = 343 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 108/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L H ++ +G D L+ + I Q K F V E N Sbjct: 6 DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 E S SLFS ++II + N + L+ ++ + ++I++ ++ Sbjct: 60 GDLTQEWQSMSLFSSRRIIELTLPNAKPGAEGSAALQALLQTPNPDVLLILEGPKLASEQ 119 Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + S+ + + C ++ + + ++ +A+ +L G+ +A+ Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L I + D + ++ +A + + +A + Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ QLL + + + K I ++ + Q +L+ + Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLI 295 Query: 305 LVRETL 310 + L Sbjct: 296 QIEHML 301 >gi|229093393|ref|ZP_04224498.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-42] gi|228689987|gb|EEL43790.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-42] Length = 321 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 124/321 (38%), Gaps = 13/321 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ I E I F++V + E + + + F + Sbjct: 1 MYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 58 Query: 83 KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 +K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 59 RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 118 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 119 TADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 178 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT + V +++ + + + ++ I A+ + D + LL + Sbjct: 179 GMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLV 238 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 239 SQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 295 Query: 316 RIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 296 ADY-SMKTGKMDKKLVLEFFL 315 >gi|126175471|ref|YP_001051620.1| DNA polymerase III subunit delta [Shewanella baltica OS155] gi|125998676|gb|ABN62751.1| DNA polymerase III, delta subunit [Shewanella baltica OS155] Length = 343 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L ++ +G D LI + I QF K V L E N Sbjct: 6 DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + E + SLFS K++I + + L+ ++ + ++II+ ++ Sbjct: 60 NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + + + C M ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L ++ + D + ++ +A + K +A + Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ LL + + ++ + K I ++ + Q +L+ + Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295 Query: 305 LVRETL 310 + L Sbjct: 296 QLEHML 301 >gi|217972283|ref|YP_002357034.1| DNA polymerase III subunit delta [Shewanella baltica OS223] gi|217497418|gb|ACK45611.1| DNA polymerase III, delta subunit [Shewanella baltica OS223] Length = 343 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L ++ +G D LI + I QF K V L E N Sbjct: 6 DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + E + SLFS K++I + + L+ ++ + ++II+ ++ Sbjct: 60 NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + + + C M ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L ++ + D + ++ +A + K +A + Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ LL + + ++ + K I ++ + Q +L+ + Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295 Query: 305 LVRETL 310 + L Sbjct: 296 QLEHML 301 >gi|312110159|ref|YP_003988475.1| DNA polymerase III subunit delta [Geobacillus sp. Y4.1MC1] gi|311215260|gb|ADP73864.1| DNA polymerase III, delta subunit [Geobacillus sp. Y4.1MC1] Length = 340 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 132/325 (40%), Gaps = 18/325 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ L+ E + + F++ V + EI + + + Sbjct: 16 PLYLLYGTESFLLTETYELLIRTVLTEEEREFNVSVYDCEEIPVQAA--LEDAETFPFLG 73 Query: 82 KKKIILIEN-----LSTEKKVLDCLEEI--IIKNICNHIIIIKSNE---IKKNNTLRKIA 131 +K++I+++N EK++ L+++ I + I++ + + + K+ Sbjct: 74 EKRVIIVKNPYFFTAEKEKEITHDLKKLESYITSPSPFSIVVFVGAYEKLDERKKITKLM 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ V + + L + + E + + + A LL G + + NEL KL Sbjct: 134 KEHAEVFIANPLAE--KELREWMMERVRQNGAMMEENAVDALLQTAGTNLMTLANELDKL 191 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + +I ++ V++++ T + ++ + +I A+ + L + +L Sbjct: 192 ALFVGPGGMIRQETVENLVSRTLEQNVFVLVEKVTKRQIAEALQVFYDLLENNEEPLKIL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +F+LL ++ + ++I + + P + + ++++ + + + Sbjct: 252 ALLANQFRLLYQVKWLA-AKGYGQQQIASILK--VHPFRIKLAMGQAALFSEEELMKAIQ 308 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 +I + K +++ +I + +L Sbjct: 309 QIAEADYEM-KSGAMDRQLIMELLL 332 >gi|326692433|ref|ZP_08229438.1| hypothetical protein LargK3_01552 [Leuconostoc argentinum KCTC 3773] Length = 332 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 128/333 (38%), Gaps = 21/333 (6%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N L++F + G + L + + K + + + + + N+ Sbjct: 12 NDALANFYVVI-GDEPAL-SQRAHSAFKALIQPEDVEMNYSQFDLA--VQGVDELLNDAM 67 Query: 76 STSLFSKKKIILIEN---LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIK--KNNT 126 S F +++I+++N L+ + K+ D L +++ + + +I++ N++K K Sbjct: 68 SMPFFGNRRVIIVQNPEFLTAKGKISDHDQKSLLQLLAQPVTENIVVFFINDLKIDKRKK 127 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + K + + + N+ I + L I +A Q LL A +N Sbjct: 128 VTKAILQTAETVDVP--ALNEHRARQAITQQLQQRAYKIDADAMQELLVRTNAQYSAMQN 185 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL KL +Y I+ + V ++ T + ++++A + ++ A+ + L + P Sbjct: 186 ELPKLVAYATHHKHISLEAVSALVPKTLTATVFDLVDAVMTQRVEQALTIYRELLQNGEP 245 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + + +F+LL +I ++ K + + P + + + L+ + + Sbjct: 246 ALRINAVLTGQFRLLLQI-AGMTGTDQDIGKAL-----GVHPYRVKLAKGMLKKYALPAL 299 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 R + + + + + IL A Sbjct: 300 RAGYLGMVAIEIKLKSTTQDPEMLFERFILKTA 332 >gi|157693056|ref|YP_001487518.1| DNA polymerase III subunit delta [Bacillus pumilus SAFR-032] gi|157681814|gb|ABV62958.1| DNA-directed DNA polymerase III delta subunit [Bacillus pumilus SAFR-032] Length = 339 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 116/310 (37%), Gaps = 14/310 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V+ YG + L+ E + ++ + F+ V + E+ + E + Sbjct: 15 HPVYCLYGKETYLLQETAAKLRQAVVDEETKDFNYSVFDMEEVPLEQAVIDAE--TFPFM 72 Query: 81 SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++++++I+N + L LE + K I+++ + K + + Sbjct: 73 GERRLVVIKNPYFLTAEKKKEKIEHELSLLEAYLEKPAPYTILVLLAPYEKLDERKKITK 132 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + N D + KSI EA + L+ GG + E++KL Sbjct: 133 LLKKKAAMVEAKELNPKETTDFTITLVKTEGKSIFSEAAEQLVMLCGGSLSSLFQEVRKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S+Y E I V ++ + I E+IN + + A+ + L +L Sbjct: 193 STYIGEREEIELADVNQLVARSLEQNIFELINQIVNRRRSQAMQMFYDLLKQNEEPIKIL 252 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +F+L+ + + ++I + + P + + + R++++ +++ + Sbjct: 253 ALISTQFRLILQTKYFAQ-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELKQIVK 309 Query: 312 KIDHRIHLAR 321 ++ + + Sbjct: 310 ELSTIDYEMK 319 >gi|219849836|ref|YP_002464269.1| DNA polymerase III subunit delta [Chloroflexus aggregans DSM 9485] gi|219544095|gb|ACL25833.1| DNA polymerase III, delta subunit [Chloroflexus aggregans DSM 9485] Length = 324 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 118/324 (36%), Gaps = 12/324 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++FYG+++ E + + + ++ D ++ VL+ ++ I + + Sbjct: 2 IYLFYGANELARSEALAELRSHLPADVAD-LNVSVLDGRKLT--IEQLVAACEAHPFLAD 58 Query: 83 KKIILIENL---STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++++++ N S K + L + + ++ ++ +I + + L K V Sbjct: 59 RRLVIVYNALKHSKAGKAREELRDYCARVPPTCDLVFVEQEDIDRRHLLFTYLSKHGVVR 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 L+ I + + +I A Q L+ G D NEL KL+SY Sbjct: 119 EFPLLS--GSELLHWIGQRARLLSVTIEPAAAQRLVDLAGNDSRTLVNELAKLASYVGRG 176 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I + V ++ D + I+ ++ A+ A + H +L ++ Sbjct: 177 GKIDQAAVDRLVTDQQEQNLFAFIDDLSGKRLGAALRGARALIEDGEAPHYVLFMLARQI 236 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 ++L + + I + ++ E +R + + ++ + Sbjct: 237 RILLHVK-QLLGQRRRADDIAGELGLKPFVARKAA--EQVRHFTVAELVTAHDRLLELDY 293 Query: 319 LARKKKYLEKNIIFQTILYIAQTA 342 + K + + ++ I Q++ Sbjct: 294 AIKTGKMQAETALELFVVEICQSS 317 >gi|82701647|ref|YP_411213.1| DNA polymerase III, delta subunit [Nitrosospira multiformis ATCC 25196] gi|82409712|gb|ABB73821.1| DNA polymerase III, delta subunit [Nitrosospira multiformis ATCC 25196] Length = 338 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 110/292 (37%), Gaps = 10/292 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + L E + + + + +++ N + NS SLF Sbjct: 18 PLYTVSGDELLLAIEAADLIRVKARQGGYIEREIFNVDSYF---NWTELERCSNSLSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +++II I + + LE+ + + ++ I + + + + Sbjct: 75 ERRIIDLRIPSGKPGNQGSAVLEKYCRALPPDTVTLVTLPRIDQQGAATRWFKALDAAGA 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ YP + L D I + L + ++ + Q L + G+ +A+ EL+KL+ Sbjct: 135 VITVYPVERGRLPDWIGQRLTMQGQNADIDTLQFLADKVEGNLLAAYQELKKLAL-LYPP 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +++ + VKD + D ++ +A + G + + M +++ + Sbjct: 194 GMLSFEQVKDAVLDVARYDAFKLSDAMVAGDTARYTRILEVLQGEGMALPLIVNTLAGQI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +LL I + ++ ++ + ++ I++ + R N + L Sbjct: 254 RLLVAIRTGLDA-GKPPGQLTSQSR--VWRDRQKIMENAARRLNLEQLASAL 302 >gi|228910160|ref|ZP_04073979.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 200] gi|228849443|gb|EEM94278.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 200] Length = 336 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT Q V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTQLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|315122026|ref|YP_004062515.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495428|gb|ADR52027.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 86 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 51/85 (60%), Positives = 64/85 (75%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I S++F +KS L S+FVFIFYGSDKGLIFEL+NQFKK I + +HD F VVLNA Sbjct: 1 MVAIRSNEFTKKSIDQLLTSYFVFIFYGSDKGLIFELVNQFKKRIGVLHHDQFYFVVLNA 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKI 85 L+IQ+N WNE+ S SLF++KK+ Sbjct: 61 LDIQENPEILWNEVKSISLFNEKKL 85 >gi|218282258|ref|ZP_03488557.1| hypothetical protein EUBIFOR_01139 [Eubacterium biforme DSM 3989] gi|218216726|gb|EEC90264.1| hypothetical protein EUBIFOR_01139 [Eubacterium biforme DSM 3989] Length = 314 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 120/296 (40%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++I YG DK ++ + KK SI + + V +A IS ++++ S+F Sbjct: 3 IYILYGKDKSMVSMKLEAIKKRHSIQEN----VNVYDAQT--DEISNVLQDLDAYSIFDD 56 Query: 83 KKIILIEN---LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+I++ N LS++ ++ +++ I+++ K + +K+ E + Sbjct: 57 DKMIIVNNCTFLSSKNTTNYEVDPFLLRKDTEMILVLICPSDKLDTRKKKVKEISSCATL 116 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 SC + +++ L + + + + +G D + +NE++K+S Y Sbjct: 117 YSCLALDDKSQKFYVQDKLKEFGVKVDFKTLDWMTSRMGLDPMCIQNEIEKISIYSKNP- 175 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 T + V++++ I ++++A + F M A++ + + Sbjct: 176 --TFEDVQNLLIVEPTNDIFKMVDAFFSQNGILLLAYYRNFRKLNMQPVAIVALLASQIR 233 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 L ++ ++ + + I + K + +Q+++R + + L + Sbjct: 234 FLFQVRVLMDEGK--AQATIAQELKANPYRVKLNMQKAMRF-SSETLLYNLSLLAD 286 >gi|323464318|gb|ADX76471.1| DNA polymerase III, delta subunit [Staphylococcus pseudintermedius ED99] Length = 324 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 111/302 (36%), Gaps = 19/302 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + + +G LI Q + D F+ V N E N T E + F Sbjct: 3 NIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYETTLN--TIIEEAMTLPFF 60 Query: 81 SKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129 S KKII+++N + EK D L E I K +II +++ ++ + + K Sbjct: 61 SDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASLIIFQVQAVKLDERKKVVK 120 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K ++ I + + I + L K I ++A + L+ G + EL Sbjct: 121 ALRKVANIKKIE--QMTEQEMQKWIHQYLNQSYKEIKQDALEALIQLTGIHYRMIKQELD 178 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL + + I ++ V+ I+ + + + + +G+ AI L + K Sbjct: 179 KLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKAQAISLVKDLIQLKEEPIK 238 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 LL + L I S ++I + + P + + R ++ + + Sbjct: 239 LLALITSNY-RLYYQSKILNQKGYSGQQIAKTVG--VHPYRVKLALNQARKYDLDTLLTI 295 Query: 310 LH 311 + Sbjct: 296 MD 297 >gi|206969403|ref|ZP_03230357.1| DNA polymerase III, delta subunit [Bacillus cereus AH1134] gi|228954609|ref|ZP_04116633.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081586|ref|ZP_04214082.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-2] gi|229180601|ref|ZP_04307942.1| DNA polymerase III, delta subunit [Bacillus cereus 172560W] gi|229192535|ref|ZP_04319496.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 10876] gi|206735091|gb|EDZ52259.1| DNA polymerase III, delta subunit [Bacillus cereus AH1134] gi|228590842|gb|EEK48700.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 10876] gi|228602844|gb|EEK60324.1| DNA polymerase III, delta subunit [Bacillus cereus 172560W] gi|228701692|gb|EEL54182.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-2] gi|228805055|gb|EEM51650.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 336 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLIYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|65321696|ref|ZP_00394655.1| COG1466: DNA polymerase III, delta subunit [Bacillus anthracis str. A2012] Length = 336 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I G I A +LL +G + E+ KL+ Y Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 T + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEXTPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|127513859|ref|YP_001095056.1| DNA polymerase III, delta subunit [Shewanella loihica PV-4] gi|126639154|gb|ABO24797.1| DNA polymerase III, delta subunit [Shewanella loihica PV-4] Length = 343 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 114/318 (35%), Gaps = 10/318 (3%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70 + K L ++ +G D L E + + F ++ E N Sbjct: 6 DQLAKQLSPLKPCYLIFGDDPWL-CETSKRAI--FDQAKREGFEERIVLTQETGFNWREL 62 Query: 71 WNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 +E N+ SLF+ ++II + + L+ ++ + + +++I ++ T Sbjct: 63 QDEWNTMSLFASRRIIELHLPQAKPGSEGSSQLQSLMQQVNPDILLVITGPKLASEQTKS 122 Query: 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K ++ + I C ++ + +++ +A+Q+LL+ G+ +A+ Sbjct: 123 KWFKQLDDKGVYIPCATPEGPQFQRWLQTRIREAGLNLTLDAQQLLLSLYEGNLLAADQA 182 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +Q L IT + ++ D + ++ + + + A + A Sbjct: 183 IQLLVLLS-PSSQITSEQLQSYFEDQSRFSVFQLADCLLANQQEKAQHILAQLQAEGTAL 241 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL G ++ L ++ + + + + + I ++ + Q +L + + + Sbjct: 242 PILLWGQFKELTTLLQLK-QAQEAGTPLQSLWSQFR--IWDKRKGLYQGALSRLSLSQIE 298 Query: 308 ETLHKIDHRIHLARKKKY 325 L +++ Sbjct: 299 TALASASKIELKLKQQGA 316 >gi|239827785|ref|YP_002950409.1| DNA polymerase III subunit delta [Geobacillus sp. WCH70] gi|239808078|gb|ACS25143.1| DNA polymerase III, delta subunit [Geobacillus sp. WCH70] Length = 344 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 128/324 (39%), Gaps = 18/324 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ L+ E + + F++ V + + + + + + Sbjct: 17 LYLLYGTESFLLTETYELLVRTVLTEEEREFNVSVYDCEDTPVQTA--LEDAETFPFLGE 74 Query: 83 KKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 K++ILI+N EK+V L LE I+ I++ ++ + + K+ + Sbjct: 75 KRVILIKNPYFFTAEKEKEVEHDLKKLESYIMSPSPFSIVVFVGPYEKLDERKKITKLMK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + V S + L + I E + + A LL G + + NEL KL Sbjct: 135 EHAEVFVASPLAE--KELREWIVERAGQSGVMVEEHAIDTLLKLAGTNLMTLANELDKLI 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +I ++ V+ ++ T + ++ + +I +A+ + L + +L Sbjct: 193 LFVGPGGMIQQETVEKLVSRTLEQNVFVLVEKVTKRQIDDALQVFYDLLENNEEPLKILS 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+LL ++ + ++I N+ P + + ++++ + + + Sbjct: 253 LLAGQFRLLYQVKWLA-AKGYGQQQIASIL--NVHPFRIKLAMGQAALFSEEELTTVMRQ 309 Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336 I + K +++ ++ + +L Sbjct: 310 IAEADYKM-KSGTMDRQLVMELLL 332 >gi|296333286|ref|ZP_06875739.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675209|ref|YP_003866881.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. spizizenii str. W23] gi|296149484|gb|EFG90380.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413453|gb|ADM38572.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. spizizenii str. W23] Length = 347 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 122/311 (39%), Gaps = 30/311 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79 H V+ YG + L+ E +++ ++ + F+L V + ++++ + + Sbjct: 15 HPVYCLYGKETYLLQETVSRIRQTVIDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71 Query: 80 FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128 ++++++++N S EKK + LE I + ++ + ++ + L Sbjct: 72 MGERRLVIVKNPSFLTGEKKKEKIEHNVSALETYIQSPAPYTVFVLLAPYEKLDERKKLT 131 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183 K +K ++ L QK+I EA + L+ + G + Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E+QKL ++ IT VK ++ + I E+IN + K ++ + L Sbjct: 185 IFQEIQKLCTFIGHREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 ++ +F+L+ + E ++I + + P + + + R++++ Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301 Query: 304 NLVRETLHKID 314 +R + ++ Sbjct: 302 GELRSIIEQLA 312 >gi|229163268|ref|ZP_04291223.1| DNA polymerase III, delta subunit [Bacillus cereus R309803] gi|228620331|gb|EEK77202.1| DNA polymerase III, delta subunit [Bacillus cereus R309803] Length = 336 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 122/322 (37%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEGYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADIVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMEILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|153001822|ref|YP_001367503.1| DNA polymerase III subunit delta [Shewanella baltica OS185] gi|151366440|gb|ABS09440.1| DNA polymerase III, delta subunit [Shewanella baltica OS185] Length = 343 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 109/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L ++ +G D LI + I QF K V L E N Sbjct: 6 DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + E + SLFS K++I + + L+ ++ + ++II+ ++ Sbjct: 60 NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + + + C M ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L ++ + D + ++ +A + K +A + Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ LL + + + + K I ++ + Q +L+ + Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGTALSALWSKHR--IWDKRKPLYQAALQRLSLE 295 Query: 305 LVRETL 310 + L Sbjct: 296 QLEHML 301 >gi|75763391|ref|ZP_00743124.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899491|ref|YP_002447902.1| DNA polymerase III, delta subunit [Bacillus cereus G9842] gi|228902849|ref|ZP_04066992.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 4222] gi|228923076|ref|ZP_04086368.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|74489120|gb|EAO52603.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543358|gb|ACK95752.1| DNA polymerase III, delta subunit [Bacillus cereus G9842] gi|228836574|gb|EEM81923.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228856773|gb|EEN01290.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 4222] Length = 336 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|89895892|ref|YP_519379.1| hypothetical protein DSY3146 [Desulfitobacterium hafniense Y51] gi|89335340|dbj|BAE84935.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 332 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 90/255 (35%), Gaps = 10/255 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V ++YG ++ I E Q KN + S + + + + N+ S F Sbjct: 18 PVNLWYGEERFFIQE-ALQLLKNSYLAQDPSGSGIEILSGKSTG-PEQIVEIANTVSFFG 75 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 K+I++E++ + L+ ++ + + + K EK S+ Sbjct: 76 G-KLIIVEDIPYFQDGQGDALEPFFAYFENPNPGTCLVFLAQSVNRGRKFFKAIEKKGSI 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L P + ++ L K++ + K + L G A EL KL+ Y Sbjct: 135 LEFGS-PKRQQEWSAWLDRELAARGKTMKPQVKALFLEWGGHQVGALSQELDKLALYVEG 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I + V+ ++ + E+++A A+ L S +L ++ Sbjct: 194 -KEIRTEDVRSLVPQAVEATVFELLDAVAARSAKEAVQKLQQVLRQ-EHSLKVLTLLSRQ 251 Query: 258 FQLLEKIHIIKECSN 272 +LL +++ Sbjct: 252 VRLLLGARAMRQQGR 266 >gi|42783450|ref|NP_980697.1| DNA polymerase III subunit delta [Bacillus cereus ATCC 10987] gi|42739379|gb|AAS43305.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|324328227|gb|ADY23487.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 336 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGDITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIMELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|146293959|ref|YP_001184383.1| DNA polymerase III subunit delta [Shewanella putrefaciens CN-32] gi|145565649|gb|ABP76584.1| DNA polymerase III, delta subunit [Shewanella putrefaciens CN-32] gi|319427335|gb|ADV55409.1| DNA polymerase III, delta subunit [Shewanella putrefaciens 200] Length = 343 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 101/295 (34%), Gaps = 16/295 (5%) Query: 22 FVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 ++ +G D LI + I Q K V L E N + E + S Sbjct: 17 PCYLIFGDDPWLIETTKDQIRQLAKRQGFDEK-----VQL-IQETGFNWNDLTQEWQAMS 70 Query: 79 LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135 LFS K+ I + + L+ ++ + ++II+ ++ T K + Sbjct: 71 LFSSKRQIELTLPQAKPGAEGSSTLQSLLQTPNPDMLLIIEGPKLSSEQTNSKWFKTLDA 130 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + I C LM ++ L + + +A+ +L + G+ +A+ +Q L Sbjct: 131 QGMYIPCATPEGDQLMRWLDSRLQHFKLQLQNDARAMLYSLYEGNLLAADQAMQLLQLLS 190 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++ + D + ++ +A + K +A + LL Sbjct: 191 -PTKPVSADELSHYFEDQSRFTVFQLSDALLLNKQQSAQHMLAQLNGEGTALPILLWTLF 249 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++ L ++ I+ + K I ++ + Q +L+ + L Sbjct: 250 KE-LNLLLNLKNEQAQGIALNTLWGKHR--IWDKRKPLYQAALQRLTLEQIEYML 301 >gi|229098794|ref|ZP_04229732.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-29] gi|229117820|ref|ZP_04247184.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-3] gi|228665617|gb|EEL21095.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-3] gi|228684638|gb|EEL38578.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-29] Length = 336 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++L+++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|229104954|ref|ZP_04235610.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-28] gi|228678448|gb|EEL32669.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-28] Length = 336 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++L+++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|254429732|ref|ZP_05043439.1| DNA polymerase III, delta subunit [Alcanivorax sp. DG881] gi|196195901|gb|EDX90860.1| DNA polymerase III, delta subunit [Alcanivorax sp. DG881] Length = 337 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 104/267 (38%), Gaps = 16/267 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + ELI+ ++ D + + + + NE S SLF Sbjct: 18 PVYLVAGDEPLQQGELIDDLRRAARDQGFDERQRF---SSDTGIDWNALLNESQSMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKN----NTLRKIA 131 ++I+ ++ + +K L +++ + +++I+ + + + + K Sbjct: 75 GRRILELVLNDKRPDKTGSQILRDVLAGLKGGASSDTLLLIRCSRLDRRKDWNSAWVKAV 134 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + I +P L + ++E L +++A +L+ G+ +A+ E+ KL Sbjct: 135 D--EMGAVIEVWPVEGKGLRNWLQERLTSRGLRANEDALALLIERSEGNLLAAAQEVDKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + E+ + + V+ + D+ ++ AT QG + + A + LL Sbjct: 193 ALLV-ENGQVGPEDVQQAVGDSSRYSPFDLTEATAQGDSQRVMHIIQTLRAEGVEPPVLL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI 278 + +LL+ + + +++ Sbjct: 252 WALSRDIRLLDGMLGGGPPPRLPPQRV 278 >gi|258424014|ref|ZP_05686896.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9635] gi|257845635|gb|EEV69667.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9635] Length = 324 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 122/331 (36%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRNKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|238790769|ref|ZP_04634528.1| DNA polymerase III subunit delta [Yersinia frederiksenii ATCC 33641] gi|238721127|gb|EEQ12808.1| DNA polymerase III subunit delta [Yersinia frederiksenii ATCC 33641] Length = 304 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 96/260 (36%), Gaps = 10/260 (3%) Query: 74 INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLF+ ++ +L+ + + + L ++ + ++I+++N++ K Sbjct: 28 CQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWF 87 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + +SC L + I A Q+L G+ +A L++ Sbjct: 88 KALSKNGVFVSCQTPELAQLPRWVGTRAKSLNLEIDDAAIQLLCYCYEGNLLALSQALER 147 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS D +T V+ + D ++A + GK A + L Sbjct: 148 LSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVIL 206 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++ L + E + + + + +R ++ ++L+ + +++ + Sbjct: 207 LRTLQRELLQLLTLKRQLE--QVPLRTLFDQFR--VWQNRRPLMTQALQRLSMQQLQQAI 262 Query: 311 HKIDHRIHLARKKKYLEKNI 330 H + R K+ ++I Sbjct: 263 HLLAQI--EVRLKQDYGQSI 280 >gi|282911224|ref|ZP_06319026.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282324919|gb|EFB55229.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|312437945|gb|ADQ77016.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus TCH60] Length = 324 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDGLL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|30022402|ref|NP_834033.1| DNA polymerase III subunit delta [Bacillus cereus ATCC 14579] gi|218230783|ref|YP_002369132.1| DNA polymerase III subunit delta [Bacillus cereus B4264] gi|229146894|ref|ZP_04275258.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST24] gi|229152526|ref|ZP_04280716.1| DNA polymerase III, delta subunit [Bacillus cereus m1550] gi|296504816|ref|YP_003666516.1| DNA polymerase III subunit delta [Bacillus thuringiensis BMB171] gi|29897960|gb|AAP11234.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 14579] gi|218158740|gb|ACK58732.1| DNA polymerase III, delta subunit [Bacillus cereus B4264] gi|228630892|gb|EEK87531.1| DNA polymerase III, delta subunit [Bacillus cereus m1550] gi|228636493|gb|EEK92959.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST24] gi|296325868|gb|ADH08796.1| DNA polymerase III subunit delta [Bacillus thuringiensis BMB171] Length = 336 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|229111797|ref|ZP_04241343.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-15] gi|228671553|gb|EEL26851.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-15] Length = 336 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I + F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLIRTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|149182760|ref|ZP_01861224.1| hypothetical protein BSG1_17475 [Bacillus sp. SG-1] gi|148849526|gb|EDL63712.1| hypothetical protein BSG1_17475 [Bacillus sp. SG-1] Length = 350 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 123/336 (36%), Gaps = 18/336 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + LI E ++ F+ + E + T + + + Sbjct: 22 IYLLYGKESFLINETQHKIVGQAISEEEMDFNFSTYDLEET--PVETAIEDAETFPFMGE 79 Query: 83 KKIILIEN---LSTEKK------VLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 ++++++ N L+ EK + E+ + I++I + ++ + + K Sbjct: 80 RRVVVLHNPVFLTAEKTREKVEHNIKKFEQYLASPSPYTILVISAPYEKLDERKKITKTL 139 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 +K V+ N+ L + E I + A +LLA G + + E+ KL Sbjct: 140 KKQAEVVEAK--KLNEKELRTWVRERTAANNVQIDESAIDLLLALAGTNLMMLTKEIDKL 197 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S Y + I E V+ + + I ++ +Q + +A+ + L +L Sbjct: 198 SLYVSDTSRIDESVVESLTARSLEQNIFALVEKVVQRRTEDALRIYYDLLKQNEEPIKIL 257 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +F+L+ ++ + ++ I + + P + + + + + + Sbjct: 258 AVLSGQFRLIYQVKEL--ARRGYGQQKIASFLR-VHPFRVKLAAGQAKHFTDEQLSTIIE 314 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + + ++ II + + + + N Sbjct: 315 LLSQGDYEMKTGRQKKEMIIELFLFKLHEQSLSNAR 350 >gi|229075997|ref|ZP_04208970.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-18] gi|228707109|gb|EEL59309.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-18] Length = 336 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++L+++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|228960592|ref|ZP_04122239.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799071|gb|EEM46041.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 336 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|196230721|ref|ZP_03129582.1| DNA polymerase III, delta subunit [Chthoniobacter flavus Ellin428] gi|196225062|gb|EDY19571.1| DNA polymerase III, delta subunit [Chthoniobacter flavus Ellin428] Length = 426 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 104/304 (34%), Gaps = 29/304 (9%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 +F+ S ++ GSD+ + + + ++ D F+ +++ + + Sbjct: 46 QEFM--PVAKAKTSAQIYAVVGSDESEVKRVAREHADRMAPKGGDEFATDIIDGVADNAD 103 Query: 67 -----ISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKN----I 109 I + + F +K++ ++N V + LE++ Sbjct: 104 QAAGRIHQTIEALLTFPFFGGEKLVWLKNANFLADTPMGRAGGVTEALEKLAETLSGGMP 163 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEESLLIGQKSI 165 + ++ + ++ K + K K V + + L + Sbjct: 164 ESTRFLLSAIDVDKRRSFYKGLGKLGKVEVFDKVDASKSGWEEEAAALARQRAEDRGLQF 223 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINA 224 S +A ++ + GGDR NEL+KL Y ++ + V+D++ + + E+ NA Sbjct: 224 SGDALELFALSTGGDRRVMENELEKLDLYLGAARRAVSVEDVRDLVPLSRAGVVFELGNA 283 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 + ++ L D + +L + + + + ++ + + ++ Sbjct: 284 LAARDLNRSLALLDQLFFQGETAIGILLVAI-----IPTVRSLLIAKDLMTRHKLSRPQQ 338 Query: 285 NIIP 288 Sbjct: 339 PFFF 342 >gi|49483834|ref|YP_041058.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus MRSA252] gi|82751190|ref|YP_416931.1| DNA polymerase III subunit delta [Staphylococcus aureus RF122] gi|257425711|ref|ZP_05602135.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 55/2053] gi|257428372|ref|ZP_05604770.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 65-1322] gi|257433697|ref|ZP_05610055.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus E1410] gi|257436611|ref|ZP_05612655.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M876] gi|282904168|ref|ZP_06312056.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C160] gi|282905995|ref|ZP_06313850.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus Btn1260] gi|282908906|ref|ZP_06316724.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914393|ref|ZP_06322179.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M899] gi|282916857|ref|ZP_06324615.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus D139] gi|282919362|ref|ZP_06327097.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C427] gi|282924687|ref|ZP_06332355.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C101] gi|283770662|ref|ZP_06343554.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus H19] gi|283958350|ref|ZP_06375801.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293503467|ref|ZP_06667314.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510484|ref|ZP_06669190.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M809] gi|293531024|ref|ZP_06671706.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M1015] gi|295428164|ref|ZP_06820796.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590870|ref|ZP_06949508.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus MN8] gi|49241963|emb|CAG40658.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82656721|emb|CAI81148.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|257271405|gb|EEV03551.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 55/2053] gi|257275213|gb|EEV06700.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 65-1322] gi|257281790|gb|EEV11927.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus E1410] gi|257283962|gb|EEV14085.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M876] gi|282313522|gb|EFB43917.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C101] gi|282317172|gb|EFB47546.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C427] gi|282319344|gb|EFB49696.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus D139] gi|282321574|gb|EFB51899.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M899] gi|282327170|gb|EFB57465.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331287|gb|EFB60801.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus Btn1260] gi|282595786|gb|EFC00750.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus C160] gi|283460809|gb|EFC07899.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus H19] gi|283470865|emb|CAQ50076.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283790499|gb|EFC29316.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290920292|gb|EFD97358.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095133|gb|EFE25398.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466848|gb|EFF09368.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus M809] gi|295128522|gb|EFG58156.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575756|gb|EFH94472.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus MN8] gi|298694868|gb|ADI98090.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|315195489|gb|EFU25876.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus CGS00] gi|323438552|gb|EGA96299.1| DNA polymerase III subunit delta [Staphylococcus aureus O11] gi|323442791|gb|EGB00416.1| DNA polymerase III subunit delta [Staphylococcus aureus O46] Length = 324 Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|46446734|ref|YP_008099.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila UWE25] gi|46400375|emb|CAF23824.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila UWE25] Length = 343 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 113/270 (41%), Gaps = 6/270 (2%) Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 ++E+ S +LF+ K++ I+N +K +++ LE+ + + +I+ + K + Sbjct: 70 LFSELYSHNLFADKRLFWIQNADKLKKNLIEALEKYFPQIPSSQYLILSAPSWNKQTSFY 129 Query: 129 KIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 K AEK +L + + + L++ + L +K I + Q+L+ G D Sbjct: 130 KAAEKEGIILELTEPKPWEKEKKLIEWASKQLSAKRKIIPYQVCQLLVKQTGLDSSLLIQ 189 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E++KL Y + IT+Q + I I ++ A + AI++A L Sbjct: 190 EIEKLLCYIGDRNEITQQDIIKICNYQPSDTIWQLGEALFKRDGLAAILIAQSLLTEGQS 249 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL +FQ + HI +N + I + + + + + + + Sbjct: 250 LLPLLRQIRSQFQ--TQFHICVMLANGKAAQEISHEFPYLKGNLLDRTIQQAQRYGLDSL 307 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 R+ + ID+ K + ++ ++ + ++ Sbjct: 308 RQGILFIDNTEMRV-KNSHADEKLLMELLM 336 >gi|295399239|ref|ZP_06809221.1| DNA polymerase III, delta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294978705|gb|EFG54301.1| DNA polymerase III, delta subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 340 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 131/325 (40%), Gaps = 18/325 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ L+ E + + F++ V + E + + + Sbjct: 16 PLYLLYGTESFLLTETYELLIRTVLTEEEREFNVSVYDCEETPVQAA--LEDAETFPFLG 73 Query: 82 KKKIILIEN-----LSTEKKVLDCLEEI--IIKNICNHIIIIKSNE---IKKNNTLRKIA 131 +K++I+++N EK++ L+++ I + I++ + + + K+ Sbjct: 74 EKRVIIVKNPYFFTAEKEKEITHDLKKLESYITSPSPFSIVVFVGAYEKLDERKKITKLM 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ V + + L + + E + + + A LL G + + NEL KL Sbjct: 134 KEHAEVFIANPLAE--KELREWMMERVRQNGAMMEENAVDALLQTAGTNLMTLANELDKL 191 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + +I ++ V++++ T + ++ + +I A+ + L + +L Sbjct: 192 ALFVGPGGMIRQETVENLVSRTLEQNVFVLVEKVTKRQIAEALQVFYDLLENNEEPLKIL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +F+LL ++ + ++I + + P + + ++++ + + + Sbjct: 252 ALLANQFRLLYQVKWLA-AKGYGQQQIASILK--VHPFRIKLAMGQAALFSEEELMKAIQ 308 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 +I + K +++ +I + +L Sbjct: 309 QIAEADYEM-KSGAMDRQLIMELLL 332 >gi|317047300|ref|YP_004114948.1| DNA polymerase III subunit delta [Pantoea sp. At-9b] gi|316948917|gb|ADU68392.1| DNA polymerase III, delta subunit [Pantoea sp. At-9b] Length = 343 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 116/325 (35%), Gaps = 14/325 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M I + + + L +F G++ LI E + + + + L+A Sbjct: 1 MIRIYPEQLSAQLREGLRACYF---LTGNEPLLIQESADAIRAASTAQGFEEHFSATLDA 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + + S SLF++++ + + + + L ++ + +++++ Sbjct: 58 QTNWDD---LFASCQSLSLFTQRQTLTLHFPENGPNAAMAEQLVKLASLLHSDILLVLRM 114 Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 ++ K + + + C + L + + + A Q+L Sbjct: 115 TKLTKAQENSAWFKALSAQAVLVPCQTPEQAQLPRWVMNRAKAMKLHVDDAAVQLLCYCY 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A L++LS D +T V++ + D ++A + GK A+ + Sbjct: 175 EGNLLALAQALERLSL-LWPDGKLTLPRVEEAVNDAAHFTPFHWVDALLAGKSKRALHIL 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 LL + LL +H+ + + + ++ + I +R + ++ Sbjct: 234 HQLEKEDSEVVILLRSLQR--DLLTLLHLQRHQAQQALRTLMDQQR--IWQNRRALFMDA 289 Query: 298 LRIWNKNLVRETLHKIDHRIHLARK 322 L+ + ++ +H + ++ Sbjct: 290 LQRLDARRLQRAIHLLAEIELSMKQ 314 >gi|197334617|ref|YP_002155513.1| DNA polymerase III, delta subunit [Vibrio fischeri MJ11] gi|197316107|gb|ACH65554.1| DNA polymerase III, delta subunit [Vibrio fischeri MJ11] Length = 344 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 114/301 (37%), Gaps = 10/301 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G++ L E ++ ++ + L+ Q + + ++ + SLFS + Sbjct: 20 YLLFGNEPLLKQESLDAIRQAAFAQGFEEKHQFTLDK---QLDWNNVFDCTQALSLFSSR 76 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140 +II + + L+E++ + I++++ + K + + T + L I Sbjct: 77 QIIELTIPDTGMTTAHTSKLKELVPTLHDDIILLLQGPRVNKAQESTQWFKALTQLGLFI 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L I++ EA Q+L G+ +A L KL+ D L Sbjct: 137 PCNTPDNQQLPRFIQQRCKKLNLKPDAEAIQMLAQWHEGNLLALAQSLDKLAL-LYPDGL 195 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T +++ + + ++++ + G+ A + + LL ++ L Sbjct: 196 LTLIRIEEALNRNNHFTPFQLVDTLLSGQAKRAQRILRQLESEGTEVIILLRTLQKELLL 255 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L+ + + + + + +R + Q +L+ + +++ + + Sbjct: 256 LQTFQYSL-SQGEAMFTVFDRYK--VWQNRRALYQAALQRLSITQIKQLIRLLAQIEIAT 312 Query: 321 R 321 + Sbjct: 313 K 313 >gi|57651979|ref|YP_186483.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus COL] gi|87162125|ref|YP_494241.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195396|ref|YP_500200.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221701|ref|YP_001332523.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus str. Newman] gi|161509815|ref|YP_001575474.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141141|ref|ZP_03565634.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733162|ref|ZP_04867327.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus TCH130] gi|258450585|ref|ZP_05698647.1| DNA polymerase III subunit delta [Staphylococcus aureus A5948] gi|262051245|ref|ZP_06023469.1| hypothetical protein SA930_1676 [Staphylococcus aureus 930918-3] gi|284024645|ref|ZP_06379043.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 132] gi|294848617|ref|ZP_06789363.1| DNA polymerase III [Staphylococcus aureus A9754] gi|304380824|ref|ZP_07363484.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286165|gb|AAW38259.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus COL] gi|87128099|gb|ABD22613.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202954|gb|ABD30764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374501|dbj|BAF67761.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368624|gb|ABX29595.1| possible DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728918|gb|EES97647.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus TCH130] gi|257861743|gb|EEV84542.1| DNA polymerase III subunit delta [Staphylococcus aureus A5948] gi|259160882|gb|EEW45902.1| hypothetical protein SA930_1676 [Staphylococcus aureus 930918-3] gi|269941076|emb|CBI49460.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|294824643|gb|EFG41066.1| DNA polymerase III [Staphylococcus aureus A9754] gi|302751416|gb|ADL65593.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340551|gb|EFM06485.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198716|gb|EFU29044.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus CGS01] gi|320140528|gb|EFW32382.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144065|gb|EFW35834.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|329314262|gb|AEB88675.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus T0131] gi|329733223|gb|EGG69560.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 324 Score = 96.2 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|302342847|ref|YP_003807376.1| DNA polymerase III, subunit delta [Desulfarculus baarsii DSM 2075] gi|301639460|gb|ADK84782.1| DNA polymerase III, delta subunit [Desulfarculus baarsii DSM 2075] Length = 349 Score = 95.8 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 40/333 (12%), Positives = 113/333 (33%), Gaps = 14/333 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + L+ + F + + + + +A + + + Sbjct: 25 PLYGVFGEEDFLVGHGVEAFCQCPAFGPNAALNTERFHAADT--PPARVLESARTLPFLG 82 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++++L+ + K L + + ++ ++ K+ ++ V Sbjct: 83 RRRLVLVLDADQYKAAQLGEFVGYLEDPPPSACLVFAGAKLDARTKFAKLLQQRGRVHVF 142 Query: 141 S-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + YP L ++ + K +S A L G A +E++KLS Y + Sbjct: 143 AKLYP---NQLPPWLQGRAKVRGKRLSASAAAFLAELAGLGLGALDSEVEKLSLYVGKRP 199 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I + ++ + I ++ +A ++ A+ + A +L + F+ Sbjct: 200 EIGLDDARAVLGGGRLSTIFDLTDAIAAADLHRALTAFNQLHALGEAPVRVLAMVQRMFR 259 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + + + E ++ ++ P L R +K + L ++ Sbjct: 260 QVLEASRLLERGG-DERQVARQMRIP--PQAAQTLLGRARRESKTGLSARLARLLQADMA 316 Query: 320 ARKKKYLEKNIIFQTILYIAQ----TACKNNNF 348 + ++ I+ + I+ + + A + N Sbjct: 317 LKSSPATDRAIVERLIMDLCRMPSADARRGKNA 349 >gi|160876555|ref|YP_001555871.1| DNA polymerase III subunit delta [Shewanella baltica OS195] gi|160862077|gb|ABX50611.1| DNA polymerase III, delta subunit [Shewanella baltica OS195] gi|315268749|gb|ADT95602.1| DNA polymerase III, delta subunit [Shewanella baltica OS678] Length = 343 Score = 95.8 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +++L ++ +G D LI + I QF K V L E N Sbjct: 6 DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + E + SLFS K++I + + L+ ++ + ++II+ ++ Sbjct: 60 NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 T K + + + C M ++ + + ++ +A+ +L + G+ +A+ Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQADARAMLHSLYEGNLLAA 179 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +Q L ++ + D + ++ +A + K +A + Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ LL + + ++ + K I ++ + Q +L+ + Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295 Query: 305 LVRETL 310 + L Sbjct: 296 QLEHML 301 >gi|298245846|ref|ZP_06969652.1| DNA polymerase III, delta subunit [Ktedonobacter racemifer DSM 44963] gi|297553327|gb|EFH87192.1| DNA polymerase III, delta subunit [Ktedonobacter racemifer DSM 44963] Length = 345 Score = 95.8 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 50/348 (14%), Positives = 113/348 (32%), Gaps = 51/348 (14%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G D+ EL+ + ++ F ++ T + S++ Sbjct: 3 YLLHGDDEFTSRELLKKLRQQS------DFGFNQDTYDGTTADLKTIMMASGTQPFLSEQ 56 Query: 84 KIILIENLSTEKKVL--------------------------------DCLEEIIIK---- 107 ++++I+ L +K+ E+ + + Sbjct: 57 RLVVIDGLPKKKRGESSTTSAAPQEEATKGARGKRSKKGAKGGALTRAAYEKALAEHVGQ 116 Query: 108 -NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166 +I+I + K N L K AE+ +S P L I I+ Sbjct: 117 MPESTVLILIVEEALDKANPLVKAAEQHGKA-TLSTQPQGAQ-LERWITARARTLDVKIA 174 Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 EA +L +G NELQKL++Y IT Q V+ + I ++ +A Sbjct: 175 PEATALLANFIGNQLRLLANELQKLATYVGPGGTITVQEVRTLSAQVQEARIFDLTDALA 234 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 Q A+ + LA L+ + + L + + + + ++ Sbjct: 235 QKNRKQALNILHDLLADGEAPLKLIGLITSQVRTLLLVKELAQ-KGMRGGQVASTLGIAP 293 Query: 287 IPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYLEKNII 331 ++ + + ++ + L D + +R + + +++ Sbjct: 294 FVAEKAL--RQVHNFSTAQLEHTYRQLLDTDAALKRSRLEPEMALDLL 339 >gi|258437418|ref|ZP_05689402.1| DNA polymerase III subunit delta [Staphylococcus aureus A9299] gi|257848623|gb|EEV72611.1| DNA polymerase III subunit delta [Staphylococcus aureus A9299] Length = 324 Score = 95.8 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMTHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|197284331|ref|YP_002150203.1| DNA polymerase III subunit delta [Proteus mirabilis HI4320] gi|227358525|ref|ZP_03842850.1| DNA polymerase III delta subunit [Proteus mirabilis ATCC 29906] gi|194681818|emb|CAR41073.1| DNA polymerase III delta subunit [Proteus mirabilis HI4320] gi|227161236|gb|EEI46310.1| DNA polymerase III delta subunit [Proteus mirabilis ATCC 29906] Length = 344 Score = 95.8 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 111/314 (35%), Gaps = 29/314 (9%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L+ E I K+ T H F+L + + + ++ S Sbjct: 18 RQSYLLWGNEPLLLQESQDAIQTVAKSQGFTEHYQFTL------DNSTDWNEIYSLCQSL 71 Query: 78 SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLFS+K+ IL+ + + L + + + ++I+ + + L K E Sbjct: 72 SLFSQKQSILLHLPENGPNAAMSEKLLRLSHELHEDLLLIL------RGHKLTKAQENSE 125 Query: 136 -------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + ++C L + + + ++ Q+L G+ +A + Sbjct: 126 WFKTLSQQGIYVTCLTPELDKLPNWVARRAKQKGLELDEQGNQLLCYCYEGNLLALAQAI 185 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++L D +T V+ + D I+A + GK A + Sbjct: 186 ERLCL-LYPDGKLTLPRVEAAVNDASHFTAYHWIDALLAGKTQRAWHILQQLKREDTEPV 244 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 LL ++ L +H + S + + + I +R I +L+ +++ + Sbjct: 245 ILLRTLQRELMQLITLH--RSAKTASLKSVFDQHR--IWQNRRPIFTAALQRLSEHQLLT 300 Query: 309 TLHKIDHRIHLARK 322 + + ++ Sbjct: 301 AMRLLTQIEITLKQ 314 >gi|288941021|ref|YP_003443261.1| DNA polymerase III subunit delta [Allochromatium vinosum DSM 180] gi|288896393|gb|ADC62229.1| DNA polymerase III, delta subunit [Allochromatium vinosum DSM 180] Length = 334 Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 101/292 (34%), Gaps = 10/292 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + E ++ D ++ ++ SLFS Sbjct: 18 PVYLICGDEPYQFGEAARLVREAARRAGFDEREILDTEGPF---QWGALAATADAMSLFS 74 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +++I + + K+ + + + +++++I + + + A++ S+ Sbjct: 75 SRRLIELRAANGKIGKEGSEAIRAYCERPCPDNLLLILAPGMDRKELQSAWAKRVESIGA 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I +P + L + + L +L G+ +A+ E++KL + Sbjct: 135 VIQVWPLKERELEAWLAQRLQSAGLQPGTGVAGLLAERSEGNLLAAAQEVEKLRL-LHDP 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + D+ + + +A + G + A +L ++ Sbjct: 194 GPLELDDLLGNLADSARFDLFALTDAALGGDRARVQRVLAVLRAEGTADVLVLWVLAREL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++L + + S + + + M++ + +L+ + +RE L Sbjct: 254 RMLAEA-AGAVAARASLDAVYSRHRVPR--MRQETIGRALKRLSPGRLRELL 302 >gi|300715831|ref|YP_003740634.1| DNA polymerase III, delta subunit [Erwinia billingiae Eb661] gi|299061667|emb|CAX58783.1| DNA polymerase III, delta subunit [Erwinia billingiae Eb661] Length = 343 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 109/302 (36%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G++ L+ E + + VV++A + ++ + SLF+ + Sbjct: 21 YILAGNEPLLLQESQDAVRAAAQKQEFTEHFSVVIDAHT---DWDAIFSTCQALSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + +L+ + + L + + ++I++++++ K + + + + Sbjct: 78 QTLLLTLPENGPNAAMAEQLVTLSSLLHADILLILRASKLTKAQENSAWFKALSANAVIV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L + + S+ A Q+L G+ +A L++LS D Sbjct: 138 PCQTPEQAQLPRWVIARAKSLKLSVDDAAVQLLCYCYEGNLLALAQALERLSL-LWPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A + A + LL ++ + Sbjct: 197 LTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRAQHILRQMQAEESEPVILLRTVQRELMM 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + + +R + E+L+ + + + +H + Sbjct: 257 LLTLQRQMVK--TPIRTLFDQHR--VWQNRRPLFSEALQRLSARQLSQAIHLLTRIELTL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|15927167|ref|NP_374700.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus N315] gi|13701385|dbj|BAB42679.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] Length = 324 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 61/331 (18%), Positives = 125/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N +K I+ E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNL--YEKEIAPIVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|59711358|ref|YP_204134.1| DNA polymerase III subunit delta [Vibrio fischeri ES114] gi|59479459|gb|AAW85246.1| DNA polymerase III, delta subunit [Vibrio fischeri ES114] Length = 344 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 115/301 (38%), Gaps = 10/301 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G++ L E ++ ++ + L+ Q + + ++ + SLFS + Sbjct: 20 YLLFGNEPLLKQESLDAIRQAAFTQGFEEKHQFTLDK---QLDWNNVFDCTQALSLFSSR 76 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140 +II + + L+E++ + I++++ + K + + T + L I Sbjct: 77 QIIELTIPDTGMTTAHTSKLKELVPTLHDDIILLLQGPRVNKAQENTQWFKALTQLGLFI 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L I++ + EA Q+L G+ +A L KL+ D L Sbjct: 137 PCNTPDNQQLPRFIQQRCKKLKLKPDAEAIQMLAQWHEGNLLALAQSLDKLAL-LYPDGL 195 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T +++ + + ++++ + G+ A + + LL ++ L Sbjct: 196 LTLIRIEEALNRNNHFTPFQLVDTLLSGQAKRAQRILRQLESEGTEVIILLRTLQKELLL 255 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L+ + + + + + +R + Q +L+ + +++ + + Sbjct: 256 LQTFQYSL-SQGEAMFTVFDRYK--VWQNRRALYQAALQRLSITQIKQLIRLLAQIEIAT 312 Query: 321 R 321 + Sbjct: 313 K 313 >gi|77919016|ref|YP_356831.1| DNA polymerase III subunit delta [Pelobacter carbinolicus DSM 2380] gi|77545099|gb|ABA88661.1| DNA polymerase III, delta subunit [Pelobacter carbinolicus DSM 2380] Length = 330 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 122/331 (36%), Gaps = 9/331 (2%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++K ++ L +F+ YG + + + Q F+L + + + + + Sbjct: 6 LKKRIRDKTLPALLFL-YGEETFFVERSLRQIIDATIPVEARDFNLQIFHGKDSRA--VS 62 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + + +FS +++++ + L+ + + + I++ N+I Sbjct: 63 ILDTARTLPVFSPIRLVVVRDTQDVPAAELEQIIPYLSDAVPETILVFTGNKIDGRRKFY 122 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 ++ +KF +++ DN+ + + + ++EA + +G EL Sbjct: 123 QVFKKFGALVEFKKLYDNQ--IPSFVTDQSQDLGFDFTEEALALFCKRVGSHLQEIHGEL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL ++ + V ++ D+ V + ++ +A + + A+ L LA + Sbjct: 181 SKLLNFLGGRRVAEVADVMTVVSDSRVDSVFDLSDALGKRDVGEALRLLHRLLAEGIAPL 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L + F+ L K H + + EK + + I P + L R + + R Sbjct: 241 LILAMITRHFRQLWKAHELLQ--QRVAEKDMAR-RIGINPYFVSGLVAQARRFPGHGFRG 297 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + ++ +L +A Sbjct: 298 IFEALLETDLALKSTGSSPSVVLESLVLRLA 328 >gi|15924577|ref|NP_372111.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus Mu50] gi|148268070|ref|YP_001247013.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus JH9] gi|150394139|ref|YP_001316814.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus JH1] gi|156979905|ref|YP_001442164.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus Mu3] gi|253315376|ref|ZP_04838589.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006372|ref|ZP_05144973.2| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793663|ref|ZP_05642642.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9781] gi|258411038|ref|ZP_05681318.1| DNA polymerase III subunit delta [Staphylococcus aureus A9763] gi|258420159|ref|ZP_05683114.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9719] gi|258443624|ref|ZP_05691963.1| DNA polymerase III subunit delta [Staphylococcus aureus A8115] gi|258446832|ref|ZP_05694986.1| DNA polymerase III subunit delta [Staphylococcus aureus A6300] gi|258448746|ref|ZP_05696858.1| DNA polymerase III subunit delta [Staphylococcus aureus A6224] gi|258453563|ref|ZP_05701541.1| DNA polymerase III subunit delta [Staphylococcus aureus A5937] gi|269203214|ref|YP_003282483.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus ED98] gi|282893088|ref|ZP_06301322.1| DNA polymerase III, delta subunit [Staphylococcus aureus A8117] gi|282928220|ref|ZP_06335825.1| DNA polymerase III, delta subunit [Staphylococcus aureus A10102] gi|295406710|ref|ZP_06816515.1| DNA polymerase III [Staphylococcus aureus A8819] gi|296276609|ref|ZP_06859116.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus MR1] gi|297245708|ref|ZP_06929573.1| DNA polymerase III [Staphylococcus aureus A8796] gi|14247358|dbj|BAB57749.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147741139|gb|ABQ49437.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946591|gb|ABR52527.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus JH1] gi|156722040|dbj|BAF78457.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787635|gb|EEV25975.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9781] gi|257840188|gb|EEV64652.1| DNA polymerase III subunit delta [Staphylococcus aureus A9763] gi|257843870|gb|EEV68264.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9719] gi|257851030|gb|EEV74973.1| DNA polymerase III subunit delta [Staphylococcus aureus A8115] gi|257854407|gb|EEV77356.1| DNA polymerase III subunit delta [Staphylococcus aureus A6300] gi|257858024|gb|EEV80913.1| DNA polymerase III subunit delta [Staphylococcus aureus A6224] gi|257864294|gb|EEV87044.1| DNA polymerase III subunit delta [Staphylococcus aureus A5937] gi|262075504|gb|ACY11477.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus ED98] gi|282590027|gb|EFB95109.1| DNA polymerase III, delta subunit [Staphylococcus aureus A10102] gi|282764406|gb|EFC04532.1| DNA polymerase III, delta subunit [Staphylococcus aureus A8117] gi|285817269|gb|ADC37756.1| DNA polymerase III delta subunit [Staphylococcus aureus 04-02981] gi|294968457|gb|EFG44481.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297177359|gb|EFH36611.1| DNA polymerase III [Staphylococcus aureus A8796] gi|312829974|emb|CBX34816.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129865|gb|EFT85855.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus CGS03] gi|329727256|gb|EGG63712.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 21172] Length = 324 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|21283267|ref|NP_646355.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus MW2] gi|49486421|ref|YP_043642.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus MSSA476] gi|297207694|ref|ZP_06924129.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911775|ref|ZP_07129218.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus TCH70] gi|21204707|dbj|BAB95403.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244864|emb|CAG43325.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887711|gb|EFH26609.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886021|gb|EFK81223.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 324 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 122/331 (36%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVNQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|88860572|ref|ZP_01135210.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudoalteromonas tunicata D2] gi|88817770|gb|EAR27587.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudoalteromonas tunicata D2] Length = 346 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 123/313 (39%), Gaps = 20/313 (6%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70 Q +K V++ G + + + Q K D L+ L+ Q + Sbjct: 7 QLPSKLSQQLAPVYLVLGEEPFQVQQCCEQIKTAAKKQGFD--ELIRLSVDN-QFDWQEL 63 Query: 71 WNEINSTSLFSKKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK 123 NS SLFS +KII + +L +K L+ + + + I+I+ +++K Sbjct: 64 EQHFNSLSLFSDRKIIEL-DLGEQKAGTSGSKTLKWLAETSNPDCILILKGAKNGTDVQK 122 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + + L + CY + HL+ + + Q +++ +AK LL + G+ +A Sbjct: 123 TAWFKAL---EAIGLFVPCYEISGNHLLTWLNQHCQTLQLNLAHDAKLFLLESTQGNLLA 179 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + EL+KLS LI + + ++ + I ++ +A + GK + + Sbjct: 180 TYQELEKLSL-IYGAKLIGKHELAPVLLNQAKFDIFDLTDALLIGKSDKIVAILARLQKD 238 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL-QESLRIWN 302 ++L ++ Q L + K + I ++ + + + +++L + Sbjct: 239 NSELNSLAWAIAREAQQLLAMQ-QKRQQGEPYSTIFKQFN---VWKNKQTITEQALSRLS 294 Query: 303 KNLVRETLHKIDH 315 + + + ++ Sbjct: 295 LSHLEVIISQLAQ 307 >gi|309790004|ref|ZP_07684579.1| DNA polymerase III, delta subunit [Oscillochloris trichoides DG6] gi|308227947|gb|EFO81600.1| DNA polymerase III, delta subunit [Oscillochloris trichoides DG6] Length = 315 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 116/303 (38%), Gaps = 12/303 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ +G D+ + + + + I D ++ L+ +++ + + + Sbjct: 2 LYLLHGPDEYQRSQALLRMRAAIPADVAD-LNITYLDGRKLKLDA--LAAACEAFPFLAD 58 Query: 83 KKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138 +++++ + + K + L + + ++ ++S+E+ + + L +K SVL Sbjct: 59 MRLVIVADALKQTKAGKEREDLRAYLERVPATCDLVFVESDEVDRRSILFTYLKKVGSVL 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L + E I A Q L+ +GG+ A NEL KL+SY Sbjct: 119 EFTPLQ--GSELTRWVYEQAQGLGVVIEPAATQRLIEFVGGESRAIINELAKLASYVGRG 176 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I V+ ++ D + I+ ++ A+ A L +L ++ Sbjct: 177 GKIRVAEVELLVADGQEQNLFSFIDDLSARRLGAALRGARMLLEDGQAPTYILFMLARQI 236 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 ++L + + + E ++ ++ + + +++ +R ++ + ++ Sbjct: 237 RILLGVRELAARRMRADEIAVELGQRP--FVIKKAMEQ-VRGFDAATLDRLHDRLLELDL 293 Query: 319 LAR 321 + Sbjct: 294 ATK 296 >gi|330686109|gb|EGG97730.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis VCU121] Length = 324 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 111/304 (36%), Gaps = 18/304 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + ++ T D F+ + N E + E + Sbjct: 1 MSDNIITVYGEVPDLVEKKSSEMINKYLQTEKDDFNFIKFNLYETEITP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK + D L E + K +++II + N++ + L Sbjct: 59 FFSDKKAILVKNAYVFTGEKVTKELNQNTDQLIEFLEKYDGDNLIIFEVYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + + + + + I+ L K I ++A + + G + E Sbjct: 119 TKALKKNGQLKKVEQMSEEE--IKKWIQSKLNENYKDIKQDALNLFIELTGVNFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L KL + + I + V II + + + + + AI L + K Sbjct: 177 LDKLMLFLGDRPTINKDDVHQIINRSLEQNVFLLTEYIQKRQKNKAIQLVKDLINMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL + L I S ++I + N+ P + + +R + + Sbjct: 237 IKLLALITSNY-RLYYQCKILNQKGYSGQQIAKTV--NVHPYRVKLALGQVRHYQLEDLL 293 Query: 308 ETLH 311 ++ Sbjct: 294 NIIN 297 >gi|303239326|ref|ZP_07325854.1| DNA polymerase III, delta subunit [Acetivibrio cellulolyticus CD2] gi|302593112|gb|EFL62832.1| DNA polymerase III, delta subunit [Acetivibrio cellulolyticus CD2] Length = 337 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/326 (14%), Positives = 123/326 (37%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++FYG ++ L + +K I + +VL + + + +FS Sbjct: 17 NLYLFYGHEEFLKKYYLESIEKAILDNDLSMLNKIVLEGKF---EMQKIEDACETLPVFS 73 Query: 82 KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +KK++L++N + ++ D L+ + +++ EI K + Sbjct: 74 EKKLVLVKNSGVFKSGKEGAKQQSAKDDLQNYLKNVPAYTVVVFYEEEIDKRLKTVDAVK 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K ++ + L+ + + L +K I+ E L+ NE+ KL Sbjct: 134 KNGLIVEFAFQK--PAELVKWVTKVLKSNKKEITIEDASYLIEICEQGMTEILNEVNKLV 191 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y + +T + ++ + + I ++ +A + I A+ L + + + P +L Sbjct: 192 MYVGDRTRVTIEDIEKVCTKSVKSRIFDLTDAVAEKNIDKALKLLNDMVILREPLPKILF 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH- 311 ++ + + ++ ++ +S + + I P + + ++ ++E + Sbjct: 252 MITRQLRHVLEMKLLC-KEGLSVKDA--SAKIGITPYAGGKVSNQAKSFSIEKLKEGIKE 308 Query: 312 --KIDHRIHLARKKKYLEKNIIFQTI 335 ++D I R + ++ + Sbjct: 309 AFELDLAIKTGRINDRIAAELLINKL 334 >gi|91200404|emb|CAJ73450.1| similar to DNA polymerase III, delta subunit [Candidatus Kuenenia stuttgartiensis] Length = 330 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 111/302 (36%), Gaps = 9/302 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF- 80 VF+ +G+++ I E + K + ++ + + +NE+ S F Sbjct: 17 PVFVVFGNEEFFIKEAVTTIKAALIADNDTDPVVIEVGGNDTPA--PVIFNELRGRSFFQ 74 Query: 81 SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 KK++++ N +K D LE + K + +I+ K L K+AEK V Sbjct: 75 KNKKLVIVINADNFVEKNKDSLESYLQKPSTHAHLILICAGWDKRIRLSKLAEKTGIVA- 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 C + L + +K+++ +A Q L ++G + L+KLS Y Sbjct: 134 -DCQRIKEYQLPTWLMSRAKHYKKTMNPKAAQRLAGDVGNNLAILDMHLEKLSIYKDNKA 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I E V ++ I E+ +A + A+ + + L S ++ + + Sbjct: 193 TIDESDVDALVTADRNRTIFELTDAVARKNFPQALKILNQMLTHGENSVKIITLLAWQIR 252 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + + I + + K+ + +R + +N + + + Sbjct: 253 RIWRAR-QLLAQGKDENSISSELQIAPFFKKK--FFDQVRDFTENDLMKKHASLLESDIQ 309 Query: 320 AR 321 ++ Sbjct: 310 SK 311 >gi|92114466|ref|YP_574394.1| DNA polymerase III subunit delta [Chromohalobacter salexigens DSM 3043] gi|91797556|gb|ABE59695.1| DNA polymerase III, delta subunit [Chromohalobacter salexigens DSM 3043] Length = 352 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 109/305 (35%), Gaps = 11/305 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V+I G + + E + + + ++ + S SLF Sbjct: 17 HPVYIVAGDEPLIHMEACDAIRAAARQRGVEEREVLHVENGF---QWGRLTESAASMSLF 73 Query: 81 SKKKII--LIENLSTEKKVLDCLEEII-IKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + K+I + S ++ L+ + I++I S + + + + Sbjct: 74 ASSKLIELRLGGQSPGQEGAKALDAYARQAKDSDDILLISSARLDRRAQSSAWFKALDKI 133 Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + +P + L + + S+ +A ++L G+ +A+ ELQKL+ Sbjct: 134 GVFVPVWPVDHQRLHFWVRDRASRHGLSLDMDAARLLGERTEGNLLAADQELQKLALLYP 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + Q + + D+ + +I+A ++G+ + + + +L + Sbjct: 194 ANARLDTQAIAGGVEDSARYDVFTLIDACLRGERVRVSRIVRGLRGEGVEAPVVLWALTR 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + ++ + + S + + I +R + Q++L + + L ++ Sbjct: 254 ELRIFLSLAQHLD-QGQSLDHACKAQRPPIPDKRRPLYQQALNRMPLKRLHKLLLFAQRL 312 Query: 314 DHRIH 318 D I Sbjct: 313 DLAIK 317 >gi|228941490|ref|ZP_04104040.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974420|ref|ZP_04134988.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981015|ref|ZP_04141317.1| DNA polymerase III, delta subunit [Bacillus thuringiensis Bt407] gi|228778675|gb|EEM26940.1| DNA polymerase III, delta subunit [Bacillus thuringiensis Bt407] gi|228785256|gb|EEM33267.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818140|gb|EEM64215.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942106|gb|AEA18002.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar chinensis CT-43] Length = 336 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 123/321 (38%), Gaps = 13/321 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ I E I F++V + E + + + F + Sbjct: 16 LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73 Query: 83 KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 +K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 74 RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 133 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + I I A +LL +G + E+ KL+ Y Sbjct: 134 TADVVEANAMQVQDVQKWIIARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 193 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT + V +++ + + + ++ I A+ + D + LL + Sbjct: 194 GMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMRILDGLFTQQEEPIKLLALLV 253 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 254 SQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 310 Query: 316 RIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 311 ADY-SMKTGKMDKKLVLEFFL 330 >gi|291616681|ref|YP_003519423.1| HolA [Pantoea ananatis LMG 20103] gi|291151711|gb|ADD76295.1| HolA [Pantoea ananatis LMG 20103] Length = 343 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 113/302 (37%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + + + + L+A Q + + + S SLF+++ Sbjct: 21 YLLTGNEPLLLQESADAIRASALAQGFEEHLSFTLDA---QTDWDSLFMSCQSLSLFAQR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + + ++ + + L ++ + ++I + ++ K + + + Sbjct: 78 QTLTLQFPENGPNAAIAEQLIKLAPLLHADILLICRMAKLSKAQENSAWFKALSAHAVLV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L + + I A Q+L G+ +A L++LS D Sbjct: 138 PCQTPEQAQLPRWVVSRAKNLKLDIDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A+ + + LL + Sbjct: 197 LTLPRVEAAVSDAAHFTPYHWVDALLGGKSRRALHILQQLEREESEVAILLRTLQRDLMT 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L +H+ + S ++ + I +RN+ E+L+ + + +++ +H + Sbjct: 257 L--LHLQRHQSQQPLRTLMDQQR--IWQNRRNLFTEALQRLDASRLQQAIHLLMQIELTL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|256821551|ref|YP_003145514.1| DNA polymerase III subunit delta [Kangiella koreensis DSM 16069] gi|256795090|gb|ACV25746.1| DNA polymerase III, delta subunit [Kangiella koreensis DSM 16069] Length = 364 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 114/287 (39%), Gaps = 15/287 (5%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 KNL + V++ G + E ++ + L+ +E + ++ Sbjct: 10 KNLNTLYPVYLVAGDEPLQKMEAVDAIRAYCKQQ-----GLLERQIIEEAGTSNPLTDQA 64 Query: 75 NSTSLFSKKKII-LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL--RKIA 131 + SLF++ +++ + S +K + ++ I + +++I + ++ L K Sbjct: 65 GTMSLFAESRLLEWRFDKSIKKAHGEFIQSFINSEPQD-VLLITAPKLSSEKRLAWYKTV 123 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 E L + +P L + + ++ +A L+ G+ +A++ +LQ L Sbjct: 124 E--QKGLVVEAWPVPAERLGNWLSTRARKLGVALEPDALATLIERCEGNLLAAQQDLQML 181 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S ++ ++K+ + D + E+ +A + G+ A+ + A + + Sbjct: 182 SLLSDGQP-VSSHNIKEYVGDNARYSVYELSDACLSGQTDRALRMLATLQAEGVYPLVPI 240 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + L++ QLL + I+Q + P ++ ILQ ++ Sbjct: 241 NQLLRECQLLADWAEKM-AKGETLANIMQSQR--VWPKRQKILQVAM 284 >gi|319779338|ref|YP_004130251.1| DNA polymerase III delta subunit [Taylorella equigenitalis MCE9] gi|317109362|gb|ADU92108.1| DNA polymerase III delta subunit [Taylorella equigenitalis MCE9] Length = 295 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 99/254 (38%), Gaps = 13/254 (5%) Query: 70 FWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIII----KNICNHIIIIKSNEIKK 123 N + S SLFS+KKI+ I + KK L ++ + +I+ ++ K Sbjct: 12 VLNHLQSNSLFSEKKILEISVPTGKFGKKGGPTLAKLAEYIDTHKPDDICVILSIPKLDK 71 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKI-HLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K S+ + P+ K L + + ++I EA +L+ + G+ + Sbjct: 72 KTQQTKWYVGIKSIATLIEIPNLKRQDLPAWARKLIKANNQTIEDEALMLLIDKIEGNIV 131 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A++ E+ KL+ + +T + V+ + D+ I ++ + + G + ++ + Sbjct: 132 AAQQEINKLALVAGKGANLTLETVRASVADSARYDIFQLTESILLGNVSRSLKILQGLKQ 191 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ ++L K+ + + S ++ + I ++L N Sbjct: 192 EGSVIPQLLPMITREIRILYKL-VQAQVGGKSINSVLNELR--IFSSFHQRYMQALSRLN 248 Query: 303 KNLVRETLHKIDHR 316 + + + H Sbjct: 249 LPKI---MGLLQHA 259 >gi|296111683|ref|YP_003622065.1| hypothetical protein LKI_07785 [Leuconostoc kimchii IMSNU 11154] gi|295833215|gb|ADG41096.1| hypothetical protein LKI_07785 [Leuconostoc kimchii IMSNU 11154] Length = 332 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 118/303 (38%), Gaps = 21/303 (6%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 KN L++F I G ++ LI K + + + +++ N+ Sbjct: 10 IKNQALANFYVIL-GEEEALIQ-RAQSEFKQLIQPLDREMNYAQFDLS--IQSLEDVIND 65 Query: 74 INSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KN 124 S F ++++++++N + E++ K + +I+ + N++K K Sbjct: 66 ATSMPFFGERRVVVVQNPDFLTAKGKVSDQTQVQFLELLEKPVSENIVAVFINDLKIDKR 125 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + K+ K+ + + N+ + + L I +A Q L A Sbjct: 126 KKITKMLLKYAESIDLP--ALNERQAQQAVSKELEARAYRIDPDALQELTLRTNAHYTAM 183 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +NEL KL + I Q V ++ T + ++++A + + A+ + L + Sbjct: 184 QNELPKLVAQATHTKHIQLQAVSALVPKTLTANVFDLVDAVMTRQTKKALTIYRDLLQNG 243 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 P+ + +F+LL +I +K +++ I P + + ++ L+ + + Sbjct: 244 EPALRVNAVLTGQFRLLLQIAGLKGTEQDMSKQL------GIHPYRVKLARQMLKKYALS 297 Query: 305 LVR 307 +R Sbjct: 298 SLR 300 >gi|229113620|ref|ZP_04243067.1| hypothetical protein bcere0018_57900 [Bacillus cereus Rock1-15] gi|228669816|gb|EEL25212.1| hypothetical protein bcere0018_57900 [Bacillus cereus Rock1-15] Length = 331 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 116/303 (38%), Gaps = 12/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L+ + + + + + + ++ +++ + E + I NE S F Sbjct: 2 PTYVMYGKETYLLEDKVKEIVRGFTNSTNEDLNVIEFDMEE--ETIQAAINEAEEYSFFG 59 Query: 82 KKKIILIENL-----STEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KI++ N K+V +DC+ + KN+ + ++I+ + K + + + E Sbjct: 60 GTKIVITRNAKFLTTDNNKEVNHDVDCILSFLEKNMEDSVLILTVDYEKLDQRKKIVKEL 119 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + N+ I IS E Q L+ ++G D +NE+ KL Sbjct: 120 KKKAIIFEAKALNQAETATWILNYAKDKNIQISNELVQELIVSIGCDLRCLKNEVDKLYV 179 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y + IT V + + I + + + AI L + + K +L Sbjct: 180 YSNGEKEITSDAVAAVTVKSLEQSIFNLSEYLLSHDTHKAIGLFNELILKKHNPIQILAT 239 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + KF +L KI +++ + I ++ + ++E +K+ + L + Sbjct: 240 LIYKFDMLFKIKVLQNGTKDKELMGIIGCHPYVLQKSKEQIKEF--NLSKDDLGNILCLL 297 Query: 314 DHR 316 Sbjct: 298 TEA 300 >gi|322383622|ref|ZP_08057373.1| DNA polymerase III subunit delta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151834|gb|EFX44777.1| DNA polymerase III subunit delta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 348 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 120/305 (39%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG++ LI + I + + + F++ + E + + + + Sbjct: 24 PVYLCYGTEPYLIDQFIGKLTEALIDPDQREFAVSKFDLTET--PVQDIIADAETLPFMA 81 Query: 82 KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 +K++ ++ + LD L + + +++ + + ++ + + K+ Sbjct: 82 PRKLVYVQRSALFTAAKENNKLDHDLDKLTAYMKAPVDYTVLVFRVDAEKLDERKKIVKL 141 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + C P + HL I++ + + S EA + L+ G + E+ K Sbjct: 142 V--KQNGVIVPCAPLSVDHLQAWIKKQATEAKFTFSPEAVEQLIVYTDGHLQSISKEIAK 199 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS Y + +T + + ++ T + ++ +Q ++ A L + + K L Sbjct: 200 LSLYVGKGGTVTGELIDQMVPRTAEQNVFMLVEHVVQKRMNKAFDLLEDLIRQKEEPIKL 259 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + ++++++ ++ + S ++ + + P I + + +++ + + + Sbjct: 260 VMLIARQYRIMLQVKALS-KQGYSHQQTASQIG--LHPYAVKIADQQGKTYSEEQLSQVI 316 Query: 311 HKIDH 315 + Sbjct: 317 SALAD 321 >gi|167461404|ref|ZP_02326493.1| DNA polymerase III subunit delta [Paenibacillus larvae subsp. larvae BRL-230010] Length = 341 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 120/305 (39%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG++ LI + I + + + F++ + E + + + + Sbjct: 17 PVYLCYGTEPYLIDQFIGKLTEALIDPDQREFAVSKFDLTET--PVQDIIADAETLPFMA 74 Query: 82 KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 +K++ ++ + LD L + + +++ + + ++ + + K+ Sbjct: 75 PRKLVYVQRSALFTAAKENNKLDHDLDKLTAYMKAPVDYTVLVFRVDAEKLDERKKIVKL 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + C P + HL I++ + + S EA + L+ G + E+ K Sbjct: 135 V--KQNGVIVPCAPLSVDHLQAWIKKQATEAKFTFSPEAVEQLIVYTDGHLQSISKEIAK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS Y + +T + + ++ T + ++ +Q ++ A L + + K L Sbjct: 193 LSLYVGKGGTVTGELIDQMVPRTAEQNVFMLVEHVVQKRMNKAFDLLEDLIRQKEEPIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + ++++++ ++ + S ++ + + P I + + +++ + + + Sbjct: 253 VMLIARQYRIMLQVKALS-KQGYSHQQTASQIG--LHPYAVKIADQQGKTYSEEQLSQVI 309 Query: 311 HKIDH 315 + Sbjct: 310 SALAD 314 >gi|120597868|ref|YP_962442.1| DNA polymerase III subunit delta [Shewanella sp. W3-18-1] gi|120557961|gb|ABM23888.1| DNA polymerase III, delta subunit [Shewanella sp. W3-18-1] Length = 343 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 16/295 (5%) Query: 22 FVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 ++ +G D LI + I Q K V L E N + E + S Sbjct: 17 PCYLIFGDDPWLIETTKDQIRQLAKRQGFDEK-----VQL-IQETGFNWNDLTQEWQAMS 70 Query: 79 LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135 LFS K+ I + + L+ ++ + ++II+ ++ T K + Sbjct: 71 LFSSKRQIELTLPQAKPGAEGSSTLQSLLQTPNPDMLLIIEGPKLSSEQTNSKWFKTLDA 130 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + I C M ++ L + + +A+ +L + G+ +A+ +Q L Sbjct: 131 QGMYIPCATPEGDQFMRWLDSRLQHFKLQLQNDARAMLYSLYEGNLLAADQAMQLLQLLS 190 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++ + D + ++ +A + K +A+ + LL Sbjct: 191 -PTKPVSADELSHYFEDQSRFTVFQLSDALLLNKQQSALHMLAQLNGEGTALPILLWTLF 249 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++ LL + ++ I+ + K I ++ + Q +L+ + L Sbjct: 250 KELNLLLNL-KNEQAQGIALNTLWGKHR--IWDKRKPLYQAALQRLTLEQIEYML 301 >gi|312891711|ref|ZP_07751220.1| DNA polymerase III, delta subunit [Mucilaginibacter paludis DSM 18603] gi|311295794|gb|EFQ72954.1| DNA polymerase III, delta subunit [Mucilaginibacter paludis DSM 18603] Length = 340 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 116/313 (37%), Gaps = 23/313 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + I + N + + F+ V+ + ++ T N + + Sbjct: 17 PLYLLHGDEPYFIDLIGNYIEHKVLSEAERGFNQTVVYGKDT--DLMTVLNAAKRYPMMA 74 Query: 82 KKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIA 131 ++++++ + +KK +D L + K + + I++ K +I K L K Sbjct: 75 DYQVVMVKEAQDMKWGKETDDKKSIDPLLSYLEKPLPSTILVFCYKYGKIDKRKKLYKAI 134 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 EK + + DN + IE + I+ +A +L LG D NEL+KL Sbjct: 135 EKNGLIFDSAELYDN--KIPGWIEGFVSDKGYRINPQASALLAEYLGNDLSKIANELEKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249 IT + ++D I + + E+ A + + + ++F A+ P Sbjct: 193 MLNVNAGQEITSKEIQDNIGISKEYNVFELQTALGRRDVVKVNRIINYFEANPKANPMVV 252 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRE 308 +L F + + H + S + + + +++ R +N + Sbjct: 253 VLGTLNNYFSKVLRYHYAAD---KSPQGLARDLGVSPYFVKD---YEQAARTFNYGKTMQ 306 Query: 309 TLHKIDHRIHLAR 321 + + ++ Sbjct: 307 VISLLREYDLKSK 319 >gi|21232048|ref|NP_637965.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767825|ref|YP_242587.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. campestris str. 8004] gi|21113788|gb|AAM41889.1| DNA polymerase III delta subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573157|gb|AAY48567.1| DNA polymerase III delta subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 342 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 114/332 (34%), Gaps = 33/332 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGISEREVFDADGREF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + S K + + + +++I +N+ K + K A+ + Sbjct: 76 PRRLVEVRMPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ +P L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWPIKPHELSDWIERRLRAQGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + ++ ++ D + + T G+ + + A AL+ +++ Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAETTFSGQPAAVVRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIWNK--------N 304 + + + ++ I ++ + +L R W + + Sbjct: 254 LRTASL-AKVQAGGGNLGAEMKAQG--IWESRQAPFKRALQRHPEPRRWERFVAEAGLVD 310 Query: 305 LVRE---------TLHKIDHRIHLARKKKYLE 327 + + L ++ + AR + L Sbjct: 311 RMAKGRAEGDPWVALERLLVAVAEARAVRLLA 342 >gi|238786084|ref|ZP_04630042.1| DNA polymerase III subunit delta [Yersinia bercovieri ATCC 43970] gi|238713023|gb|EEQ05077.1| DNA polymerase III subunit delta [Yersinia bercovieri ATCC 43970] Length = 314 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 102/266 (38%), Gaps = 10/266 (3%) Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + ++ + SLF+ ++ +L+ + + L ++ + ++I+++N++ K Sbjct: 32 ESIFSLCQALSLFASRQTLLLSFPESGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 91 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + T+ + +SC P + L + I A Q+L G+ +A Sbjct: 92 ENSAWFKALSTNGVLVSCQPPEQAQLPRWVSTRAKSLNLDIDDAAIQLLCYCYEGNLLAL 151 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L++LS D +T V+ + D ++A + GK A + Sbjct: 152 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 210 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ L + + + + + + + +R ++ ++L+ + Sbjct: 211 SEPIILLRTLQRELLQLLTLKRRMD--QVPLRALFDQFK--VWQNRRPMMTQALQRLSMQ 266 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330 +++ +H + R K+ ++I Sbjct: 267 QLQQAVHLLTQ--MEIRLKQDYGQSI 290 >gi|242373891|ref|ZP_04819465.1| DNA polymerase III subunit delta [Staphylococcus epidermidis M23864:W1] gi|242348445|gb|EES40047.1| DNA polymerase III subunit delta [Staphylococcus epidermidis M23864:W1] Length = 324 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 121/333 (36%), Gaps = 22/333 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + ++ D F+ V N + +++ E + Sbjct: 1 MSDNIVAIYGEVPELVEKKSSEIVNQYLGQDKDDFNFVKFNM--YENDLTPIIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK I+++N + EK + L E I K ++II + N++ + L Sbjct: 59 FFSDKKAIVVKNAYVFTGEKVTKELNHSAEQLMEFIEKYDGENLIIFEVYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K+ + + + + + I+ L K I ++A + + G + E Sbjct: 119 TKSLKKYAQLKKVEQMSEEE--IKKWIQRKLNENYKDIKQDALNLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL + + I + V II + + + +G+ A+ L + + K Sbjct: 177 LEKLMLFLGDRPTINKDDVNQIINRSLEQNVFLLTEFIQKGRKNKAVQLVNDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 LL ++L + I+ + K + P + + R + N Sbjct: 237 IKLLALITSNYRLYYQCKILGQKGYSGQQIAKTVNA-----HPYRVKLALNQARNYQLND 291 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + + ++ I+ IL + Sbjct: 292 LLNIIDSCAETDYKLKSSYMDKQLILELFILSL 324 >gi|313897337|ref|ZP_07830880.1| DNA polymerase III, delta subunit [Clostridium sp. HGF2] gi|312957707|gb|EFR39332.1| DNA polymerase III, delta subunit [Clostridium sp. HGF2] Length = 319 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 121/327 (37%), Gaps = 16/327 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG ++ L+ E + + ++ +D L L ++ + + FS Sbjct: 3 YVLYGEEQYLLQESLTRIVRSHVPDAND---LNKLVYDADTTDLDVILEDAMTIPFFSDC 59 Query: 84 KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 KIIL+ + + E V E + + +++ + +K + +KI +K + Sbjct: 60 KIILVYHANFLSAANEHAVDTAALERYLDDPLESTVLVLIGDFEKLDARKKIVKKVQKTC 119 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++ ++E + I A Q LL L D + E++KL Y Sbjct: 120 KVLQYRKLDEQGKQSYVQEQVKKRSLQIEPSAMQALLRRLPLDIRTIQTEMEKLELY--- 176 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +I+ V+ ++ + +++NA + + + + + L+ + Sbjct: 177 GGVISSDVVERLVTRPLEEDVFQLVNAVVDRDLRKSFHMWQDLCVLNKDAIYLIALLAAQ 236 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F+ L ++ + + I + + P + + ++ + + L ++ + Sbjct: 237 FRFLYEVKALM-LHGKGKDAIKDELKA--HPYRVQLAMKTAQRLGIGYLMHILEQL-ATL 292 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344 K L+K + F+ L Q + Sbjct: 293 DQNMKAGRLDKKLGFEMFLLGIQGVRQ 319 >gi|152996928|ref|YP_001341763.1| DNA polymerase III subunit delta [Marinomonas sp. MWYL1] gi|150837852|gb|ABR71828.1| DNA polymerase III, delta subunit [Marinomonas sp. MWYL1] Length = 342 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 114/280 (40%), Gaps = 8/280 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + L E + +K D V +A ++ NE S SLFS Sbjct: 18 PIYIISGDEVLLCQEAADSIRKAAQHHNIDERLRFVADAQFDWQD---VINENQSLSLFS 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAI 140 +++ I+ +K L ++ ++II++ +I K + + + + Sbjct: 75 TRRMFDIQIDKMGEKHSKALAQLSQSLSEDNIILLTLPKIDARTQKAKWFTQLESQGVFV 134 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 +P + L +++ S++++A ++ G+ +A EL+KL+ + + Sbjct: 135 QIWPIDANRLPAWVQQRAQTLDLSLTRDAASMICERGEGNLLALSQELEKLALMHGQGVQ 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + V + + D+ I ++ + + GK +++ L + + +L F ++ Q Sbjct: 195 IDAEKVAESVADSSRYSIYDLSDRLLMGKAKDSMHCLHQLLGEGVEASIILWLFNREIQT 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + + S SF++ Q + I + + ++ Sbjct: 255 LANLLQSMQSS--SFKQACQSEK--IWDKRVPFYESAMSR 290 >gi|159900773|ref|YP_001547020.1| DNA polymerase III subunit delta [Herpetosiphon aurantiacus ATCC 23779] gi|159893812|gb|ABX06892.1| DNA polymerase III, delta subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 323 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 114/299 (38%), Gaps = 17/299 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++F+G D IN K F++VVL+ I+ N E +F Sbjct: 2 LYLFFGPDDYTRQATINVL-KAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAY--PVFHD 58 Query: 83 KKIILIENL---STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-----KF 134 ++++++ +L + ++ D L+ ++ + +++ ++ ++ L + + K Sbjct: 59 RRLVIVHDLLKHAKSAEMRDGLKSLVQRLPSTTDLVLNESD-APDSRLSVVKDIQALVKT 117 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 L+ +++ + +A Q L +G D NE+ KL++Y Sbjct: 118 KQAEQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYVGSDGWMLHNEIAKLAAY 177 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ I+ + V ++ D + I+A + A+ + LA +L Sbjct: 178 VGQNGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMI 237 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++ ++ + + + + K + R +++ R ++ +R ++ Sbjct: 238 ARQA----RLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQA-RNFSPTELRMLHERV 291 >gi|241667450|ref|ZP_04755028.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875998|ref|ZP_05248708.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842019|gb|EET20433.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 325 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 114/258 (44%), Gaps = 20/258 (7%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN + +F+ G + +I ++ +QF K+ I+YHD ++N+ Sbjct: 11 KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHDL----------NEQNLDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + E++S SLFS K+I + +KK+ L + +I N +++ S +KK NT Sbjct: 61 LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K + + IS + N + +++I+ S+++ A Q+L+ G+ IAS+ Sbjct: 120 KWFQSLEHRAIHISIFNPNIHNAINIIDYEAKQLGLSLTQPAIQLLVQKTEGNLIASKQI 179 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++ LS E ++ I + + ++ A + + A+ + + L Sbjct: 180 IKLLS--RQSTQTYDENTIRPFIHEHANFDVFDLSEALLSQQKTKALKILNSILTENDKP 237 Query: 248 HALLHGFLQKFQLLEKIH 265 +L ++ +++ ++ Sbjct: 238 PLVLWAIKRELRIISQLK 255 >gi|163847973|ref|YP_001636017.1| DNA polymerase III subunit delta [Chloroflexus aurantiacus J-10-fl] gi|222525854|ref|YP_002570325.1| DNA polymerase III subunit delta [Chloroflexus sp. Y-400-fl] gi|163669262|gb|ABY35628.1| DNA polymerase III, delta subunit [Chloroflexus aurantiacus J-10-fl] gi|222449733|gb|ACM53999.1| DNA polymerase III, delta subunit [Chloroflexus sp. Y-400-fl] Length = 323 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 115/306 (37%), Gaps = 15/306 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++FYG ++ E + + + + D ++ VL+ ++ I + ++ Sbjct: 2 IYLFYGPNELARSEAVAELRAGLPAEVAD-LNVSVLDGRKLT--IEQLVAACEAHPFLAE 58 Query: 83 KKIILIENL---STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++++++ + S K + L + ++ ++ E+ + + L K V Sbjct: 59 RRLVIVYDALKHSKAGKGREELRSYCERVPATCDLVFVEQEEVDRRHLLFTYLSKHGVVR 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 L+ IE+ + +I A Q L+ G D NEL KL+SY + Sbjct: 119 EFPLLQ--GAELLRWIEQRAKMLHATIESAAAQRLVELAGNDSRLLANELAKLASYVGRN 176 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I + V ++ D + ++ ++ A+ A + +L ++ Sbjct: 177 GKIDLRAVDRLVTDQQEQNLFAFLDELSSRRLGPALRGARALVEDGQAPPYVLFMLARQI 236 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDH 315 ++L ++ + + E + K + R +++ R ++ + + +DH Sbjct: 237 RILLQVRQLLSQRRRADEIAAELNLKP--FVARKATEQA-RNFSLPELIHAHDRLLELDH 293 Query: 316 RIHLAR 321 I R Sbjct: 294 AIKTGR 299 >gi|220932126|ref|YP_002509034.1| DNA polymerase III, delta subunit [Halothermothrix orenii H 168] gi|219993436|gb|ACL70039.1| DNA polymerase III, delta subunit [Halothermothrix orenii H 168] Length = 337 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 119/304 (39%), Gaps = 17/304 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG DK L + I++F F+L +N E + + ++ + + S Sbjct: 17 PVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGE-DNFVDSLIAKVKTLPVMS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRKIAEKFTSV 137 ++ ++ + T K D + + ++I+ +I K K ++ + Sbjct: 76 DRRYVVARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQIDKRLKPAKKIKEVGEI 135 Query: 138 LAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + Y L + I K +++ Q+L + NE++K+S Y Sbjct: 136 INLKAPRY----RQLDNWIISKFKNHGKKVNRSVVQLLEEMFSNNLEQLENEIEKVSIYT 191 Query: 196 LEDILITEQHVKDIICD---THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + LI+ + ++ II I ++++A + AI+L + + +L Sbjct: 192 GDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMMKEGEAPLRILA 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +++ +LL + +K S ++I + ++ P+K+ +++ + L K Sbjct: 252 MVVRQVRLLLSVKELK-NEGKSPDQIAKILGEHPYPVKK--CYRQCDNFSEEELEIMLEK 308 Query: 313 IDHR 316 Sbjct: 309 FLKA 312 >gi|330976840|gb|EGH76872.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 219 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + HL I + L + +++A +++ A + G+ +A+ E++KL E+ IT + Sbjct: 18 DIGHLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVET 76 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ + D+ + + +A + G+ +A+ + + + + +L ++ + L + Sbjct: 77 VQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMS 136 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318 + +K+ I ++ ++ ++L+ + + L +ID +I Sbjct: 137 QQF-SQGVPLDKVFSSARPPIWDKRKPLMGKALQRHSAKRWSQLLMDAQRIDAQIK 191 >gi|222529899|ref|YP_002573781.1| DNA polymerase III subunit delta [Caldicellulosiruptor bescii DSM 6725] gi|222456746|gb|ACM61008.1| DNA polymerase III, delta subunit [Caldicellulosiruptor bescii DSM 6725] Length = 335 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 55/349 (15%), Positives = 137/349 (39%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA ++ + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KTKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTKRFSHAIVGGNLN--NIVRF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + ++++ +N ++ + ++ + + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYTSTNSSLNLSAIIDNLKNFKSDST 115 Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II ++ E K + L++IA V PD L+ ++ + K+IS Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAEFVQ--PSMPD----LVKWVQNVMSKEGKTISDNM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + + + +L L+ F++L + ++E + K + E + Sbjct: 230 LESGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + + ++ + K ++ ++ + ++ + + I Sbjct: 287 DK--YKKQAETFTLDKIKTIIQKTIEYEYMIKRGQIDDETALEVLLYQI 333 >gi|154496560|ref|ZP_02035256.1| hypothetical protein BACCAP_00852 [Bacteroides capillosus ATCC 29799] gi|150274193|gb|EDN01284.1| hypothetical protein BACCAP_00852 [Bacteroides capillosus ATCC 29799] Length = 347 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 122/331 (36%), Gaps = 15/331 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++F+G + L + Q KK + + F+L L+ E +I ++ + S Sbjct: 26 RLYVFHGEETYLRDFYLGQMKKKLLPAGMEEFNLHTLSGKEF--DIKRLAQMVDCLPMMS 83 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-----KKNNTLRKIAEKFTS 136 ++ +I++ + K + L + ++ +++ ++ ++ L ++ S Sbjct: 84 ERTLIVVSDYDLYKGDKEGLTALFA-DLPDYVCLVFVYDLIEYKTDARTKLAAALKEHGS 142 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V+ + + L+D + I E + L+ G +E+ K+ SY Sbjct: 143 VVNFA--RQEQGDLVDWVRRRFRATDHDIGSEEAKYLIFLCGDLMNGLISEIGKIGSYA- 199 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ++ IT + + + + ++ +A G A + + +L + Sbjct: 200 KNHRITREDIDAVATPQLDAVVFQMTDAIAAGNFDKAAAVLGDLYHMQEAPIKILAVLGK 259 Query: 257 KFQLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + L + E S+ + + P ++ L +S R ++ R + + Sbjct: 260 QLRQLYSARLAIENRKGTSYLMELWGMR-SAYPAEK--LMQSARRFSLPWCRRAVIRCGE 316 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + ++ Q +L +A + + Sbjct: 317 MDLAMKSTGADGEELLTQFLLELAGASSRKR 347 >gi|194017698|ref|ZP_03056308.1| DNA polymerase III, delta subunit [Bacillus pumilus ATCC 7061] gi|194010598|gb|EDW20170.1| DNA polymerase III, delta subunit [Bacillus pumilus ATCC 7061] Length = 339 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 116/310 (37%), Gaps = 14/310 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V+ YG + L+ E + ++ + F+ V + E+ + + + Sbjct: 15 HPVYCLYGKETYLLQETAAKLRQAVVDEETKDFNFSVFDMEEVPLEQA--VTDAETFPFM 72 Query: 81 SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++++++I+N + L LE + K I+++ + K + + Sbjct: 73 GERRLVVIKNPYFLTAEKKKEKIEHELSLLEAYLEKPAPYTILVLLAPYEKLDERKKITK 132 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + N D + K+++ EA + L+ G + E++KL Sbjct: 133 LLKKKAAMVEAKELNPKETTDFTITLVKTEGKAMTSEAAEQLVMLCAGSLSSLFQEVRKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S+Y E I V ++ + I E+IN + + A+ + L +L Sbjct: 193 STYIGEREEIELADVNQLVARSLEQNIFELINQIVNRRRSQAMQMFYDLLKQNEEPIKIL 252 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +F+L+ + + ++I + + P + + + R++++ +++ + Sbjct: 253 ALISTQFRLILQTKYFAQ-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELKQIVK 309 Query: 312 KIDHRIHLAR 321 ++ + + Sbjct: 310 ELSTIDYEMK 319 >gi|257869953|ref|ZP_05649606.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2] gi|257804117|gb|EEV32939.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2] Length = 341 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 143/337 (42%), Gaps = 24/337 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN-EINSTSLF 80 +++ G++K L ++ F ++ D + + ++++ E S F Sbjct: 17 PIYLVTGTEKFLQEQVRQAFLTRFEVSKDD----LNFASFDMEREPLDLVIQEAQSLPFF 72 Query: 81 SKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129 +++I +E L+ EKK LD + + +++I + ++ + + K Sbjct: 73 GDQRLIFVERPFFLTAEKKANVPEHDLDDFLLYLKNPMDTAVLVIFAEYDKLDERKKITK 132 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K ++ ++ + + ++++L +++EA ++ L + ELQ Sbjct: 133 QLKKAGIIIDVAPMKE--ADVRRYLQQTLTNDGIEMTREAFELFLRLTDLHLSKAMQELQ 190 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y +D IT++ V+ +I T + E+ N +QGK+ +A L D L + Sbjct: 191 KLRLYAGKDAKITKEIVQQLIPKTLEHNVFELTNDVLQGKVADAWRLYDDLLLQGEETIK 250 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + +LL + I+ + I +T K I P + + + R +N+ + Sbjct: 251 INAILIGQVRLLLQASILMKVGYQQAN--IAETLK-IHPYRVKLAMQQARKFNEKQLAAL 307 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 H++ +L K ++K +FQ L++ + + Sbjct: 308 YHELIENDYLV-KSGQIDKEFLFQ--LFVLKHGKRQG 341 >gi|53804497|ref|YP_113908.1| DNA polymerase III subunit delta [Methylococcus capsulatus str. Bath] gi|53758258|gb|AAU92549.1| DNA polymerase III, delta subunit [Methylococcus capsulatus str. Bath] Length = 334 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 107/293 (36%), Gaps = 11/293 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + + E + + + L + STF +S LF Sbjct: 18 PLYVLSGDEPLQLGEAADAIRMAARDRGYGLRELFHVEPGFSW---STFLEAGDSVPLFG 74 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++I+ + N +K+ L + + + I+I+ + ++ A V + Sbjct: 75 DRRILDLRLNAKPDKEGAAALLRYLDRPPADAILIVILPRLSRDELNTAWARAADRVGVI 134 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198 + +P L+ ++ + + ++L A + G+ +A+ E++KL Y Sbjct: 135 VQVWPLQGRELVAWLDRRMNRLGLLADQSGLRLLAARVEGNLLAAAQEIEKLHILY--GA 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I ++ + +CD + ++ A ++G + + + +L ++ Sbjct: 193 GRIEDEQILAAVCDCARYDVFDLTTAMLEGHTLRTLRILYGLEGEGVAPPVVLWAITREL 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + L + + + ++ + I ++ + + +++ V + + Sbjct: 253 RSLAVVQKD-TTRGLPMDGVLARLR--IFDKRKEAFARAAKRLDRDGVLDAIR 302 >gi|330722511|gb|EGH00334.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC2047] Length = 260 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 92/234 (39%), Gaps = 5/234 (2%) Query: 90 NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA-ISCYPDNKI 148 N + L + N++++I S ++ K K ++ ++ A I +P Sbjct: 3 NGKPGSEGSKALIQYAQSPCDNNLLLISSAKLDKTAKNSKWFKQLDAIAAHIEIWPIESQ 62 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-LITEQHVK 207 L I+ + KEA +L + G+ +A+ E++KL E+ ++ Q ++ Sbjct: 63 QLPQWIDRRMRQSGLKADKEAAILLAELVDGNLLAASQEIEKLKLLLPENQPQVSAQTIR 122 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + D+ +++ +G I + I + +LL ++ + L I Sbjct: 123 SYVVDSARYNAFNLVDNAFKGNIRHCIKMLKGLRDEGTEPLSLLWILGREMRQLSLIKQD 182 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + S ++ +Q + ++ ++ ++L + + +I H LA+ Sbjct: 183 IQLGR-SVDQAMQAQR--VWRNRQPLMNKALSRLSLQKLANLNQQIAHADQLAK 233 >gi|253732240|ref|ZP_04866405.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724029|gb|EES92758.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 324 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 124/331 (37%), Gaps = 18/331 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + +E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSHE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + ++ I+ IL + Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324 >gi|262402702|ref|ZP_06079263.1| DNA polymerase III delta subunit [Vibrio sp. RC586] gi|262351484|gb|EEZ00617.1| DNA polymerase III delta subunit [Vibrio sp. RC586] Length = 342 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 110/304 (36%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E N +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKNAIEKTAQAQG---FLEKHRFSADAGLDWGSVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPEAGINAQTTKELSSLASQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + ++ + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQKLG-NLGSLFERYR--VWQNRRPLYSAALQRLPSTTLFRLVGLLAKAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|315122027|ref|YP_004062516.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495429|gb|ADR52028.1| DNA polymerase III subunit delta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 113 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 69/109 (63%), Positives = 84/109 (77%) Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +A+FF SKM HALL+GFLQKFQLLEKI+I E IS EK IQK EK IP KR +LQ Sbjct: 1 MAEFFFGSKMSPHALLNGFLQKFQLLEKIYIESEFLEISIEKTIQKFEKTRIPKKRLLLQ 60 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + L+IWNKN++++ LHKI+ IHL RKK+ LEK+IIFQ IL I+QTA K Sbjct: 61 KFLQIWNKNIIKKILHKINQEIHLLRKKRSLEKSIIFQIILLISQTAHK 109 >gi|325980975|ref|YP_004293377.1| DNA polymerase III, delta subunit [Nitrosomonas sp. AL212] gi|325530494|gb|ADZ25215.1| DNA polymerase III, delta subunit [Nitrosomonas sp. AL212] Length = 334 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 117/310 (37%), Gaps = 13/310 (4%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I+ + Q K + + G++ LI E + + + + + ++ Sbjct: 3 IKLEQLAQSLQKQTASLYTLL---GNEPLLILEAADLIRAHAHQHGYTERKVFTVDQHF- 58 Query: 64 QKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + S + N+ SLF ++KI I I + K+ +E + + ++ I Sbjct: 59 --DWSDLLHADNNLSLFGERKIMDIRIPSGKPGKEGGKAIEAYCDTLPQDTLTLLTLPRI 116 Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K + + TS + I YP + L I + L Q+ Q L + G+ Sbjct: 117 DKQGQATRWFKALETSGVLIQVYPIERNQLPIWIGQRLDKQQQKTDSATLQFLADQVEGN 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +A+ E+QKL+ +T + +KD + + ++ +A I G I + Sbjct: 177 LLAAHQEIQKLAL-LYPSGNLTFEQIKDAVLNVARYDAFQLSDAMIHGDSARIIRILTGL 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + +L ++ + L I + S +++Q I ++ +Q + + Sbjct: 236 QAEGVAPLLILATLTEQIRQLIIIRKGLDT-GQSPVQLLQTAR--IWGDRQKSVQAAAKR 292 Query: 301 WNKNLVRETL 310 + ++ + L Sbjct: 293 ISPQVLMQGL 302 >gi|22299116|ref|NP_682363.1| DNA polymerase III subunit delta [Thermosynechococcus elongatus BP-1] gi|22295298|dbj|BAC09125.1| tlr1573 [Thermosynechococcus elongatus BP-1] Length = 342 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 127/333 (38%), Gaps = 19/333 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ ++G D+ + + + ++ + + F+ + + + + L Sbjct: 9 PVYFYWGEDQFQLEQAVKNLRQQVVDPLWESFNFEKFAGEDAVAVQAALAQAM-TPPLGG 67 Query: 82 KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFTS 136 +++ + N + ++ +L LE + + N +++ S + + K+ ++ + Sbjct: 68 GDRLVWLMNTTLGQRCSAELLADLELTLPQIPPNCHLLLTSTQKPDSRSKAVKLLQQHGN 127 Query: 137 VLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + P + I E+ Q + E Q+L +G D RNEL+KL+ + Sbjct: 128 IQEFNPIAPWKTAEIEQQIREAAQRYQLHLPPEGLQLLAEAVGNDSRQLRNELEKLALFA 187 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + +T + + ++ T + + + ++G A+ + L P LL Sbjct: 188 GDRP-LTAEDITTLVHATQQNSL-TLASTLLRGDTAAALTQLEDLLLQNEPPLRLLATLT 245 Query: 256 QKFQL---LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++F+ ++ + ++ I+ + ++ + +++ + +L ++ L Sbjct: 246 KQFRTWLWVKLLSHERDNQRIAKLAEVGNPKR-VYFLQKEVNAVAL-----PSLQACLQI 299 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + + Q ++ ++ T + Sbjct: 300 LLATEYQLKVGAEP-VATLRQGMIQLSLTCSRR 331 >gi|324323943|gb|ADY24986.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 331 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 116/303 (38%), Gaps = 12/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L+ + + + + + + ++ +++ + E + I NE S F Sbjct: 2 PTYVMYGKETYLLEDKVKEIVRGFTNSTNEDLNVIEFDMEE--ETIQAAINEAEEYSFFG 59 Query: 82 KKKIILIENL-----STEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KI++ N K+V +DC+ + KN+ + ++I+ + K + + + E Sbjct: 60 GTKIVITRNAKFLTTDNNKEVNHDVDCILSFLEKNMEDSVLILTVDYEKLDQRKKIVKEL 119 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + N+ I IS E Q L+ ++G D +NE+ KL Sbjct: 120 KKKAIIFEAKALNQAETATWILNYAKDKNIQISNELVQELIVSIGCDLRCLKNEVDKLYV 179 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y + IT V + + I + + + AI L + + K +L Sbjct: 180 YSNGEKEITSDAVAAVTVKSLEQSIFNLSEYLLSHDTHKAIGLFNELILKKHNPIQILAT 239 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + KF +L KI +++ + I ++ + ++E +K+ + L + Sbjct: 240 LIYKFDMLFKIKVLQNGTKDKELIGILGCHPYVLQKSKEQIKEF--NLSKDDLGNILCLL 297 Query: 314 DHR 316 Sbjct: 298 TEA 300 >gi|312135644|ref|YP_004002982.1| DNA polymerase III subunit delta [Caldicellulosiruptor owensensis OL] gi|311775695|gb|ADQ05182.1| DNA polymerase III, delta subunit [Caldicellulosiruptor owensensis OL] Length = 335 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 136/349 (38%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVKF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + ++++ +N ++ + ++ + + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSNLNLSAIIDNLKNFKSDST 115 Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II ++ E K + L++IA V D L+ ++ + K+IS+ Sbjct: 116 YIIFKEYEAKENKLFSALKQIAYSAEFVQ--PSMSD----LVRWVQNVMSKEGKAISENM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHEDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + +L L+ F++L + ++E + K + E + Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + + ++ + K ++ +K + ++ + + I Sbjct: 287 DK--YKKQAESFTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333 >gi|89891337|ref|ZP_01202843.1| DNA polymerase III delta subunit [Flavobacteria bacterium BBFL7] gi|89516368|gb|EAS19029.1| DNA polymerase III delta subunit [Flavobacteria bacterium BBFL7] Length = 335 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 106/302 (35%), Gaps = 9/302 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG++ I E+ + N+ F+ +VL +I ++ + + Sbjct: 18 PIYFLYGNEPYFIDEISDYIAANVLDEGEKGFNQMVLYGRDI--DMGELVENAKRFPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++I+++ + D E + I++ + + E + + Sbjct: 76 DYQVIIVKEAQDLARHWDKFESYAKQPQPTTILVFNYKYKTPDKRKKVFKEMAKNAVFFE 135 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 P + ++ I L +I +A Q+L+ LG + +NEL KL +I Sbjct: 136 SKPLYENKVLPWINSHLKSNGYNIEPKAGQMLIEFLGTEIAKIKNELDKLMIIVPAGTMI 195 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259 T Q +++ I + E+ A + ++F + P + F Sbjct: 196 TPQLIEENIGISKDYNNFELRKALGSRDTVKVNRIINYFAENPKDNPLVVTIGQLHSFFV 255 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K+H + + + + + ++ + ++ + + ++ + I Sbjct: 256 QLLKLHAMTD---RNPQTVARQIGVSPFFVQEYF--TAAKHYSMKHCSHAIKIIRDIDMK 310 Query: 320 AR 321 ++ Sbjct: 311 SK 312 >gi|301059428|ref|ZP_07200349.1| DNA polymerase III, delta subunit [delta proteobacterium NaphS2] gi|300446464|gb|EFK10308.1| DNA polymerase III, delta subunit [delta proteobacterium NaphS2] Length = 332 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 120/320 (37%), Gaps = 11/320 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++FYG D + +++ Q ++ F++ V + E N + S S Sbjct: 21 PLYLFYGPDDFHLEKILEQIREKAVPESARDFNVQVFDG-EGGVNPGHILDAARSLPFLS 79 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++I++ L+ L + + II + K + L+ + A+ Sbjct: 80 GNRLIIVRRTDRIAASDLEILIPYVKSPVETTCIIFVAQ--KPDFRLKFFSSMRKQGHAV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + I S +IS++A + L +G A EL+KL Sbjct: 138 HFKELTDAQAVPWIMASAREMGLNISQDACRHLHGMIGNRSRALYTELEKLHLR-HGTGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL--ASKMPSHALLHGFLQKF 258 I +K++ + + I E+++ Q ++ + + +L K + ++ ++ Sbjct: 197 IGTPEIKELSIFSRMYTIFELMDEISQRGKARSLSILNRYLEEEGKDAAFGIIGMLTRQI 256 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 +++ + + ++S + + +K + + IL ++ R W + + + L + Sbjct: 257 RIIFQAKELM-SQHVSRKDMAKKLGVPAFVVGK-ILGQA-RRWQEKDLEKALMLLYQAD- 312 Query: 319 LARKKKYLEKNIIFQTILYI 338 + K ++ +L I Sbjct: 313 GSLKSGSQAPLVLENFLLSI 332 >gi|116492909|ref|YP_804644.1| DNA polymerase III, delta subunit [Pediococcus pentosaceus ATCC 25745] gi|116103059|gb|ABJ68202.1| DNA polymerase III, delta subunit [Pediococcus pentosaceus ATCC 25745] Length = 339 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 123/313 (39%), Gaps = 18/313 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81 +++ G D + KK + + ++ + +++ ++ ++ S F Sbjct: 18 IYLVEGPD----NYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLGMVLDDAQSAPFFG 73 Query: 82 KKKIILIEN---LSTEKKVL----DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +++++ N L+ EK L D L I I++I + K + + + + Sbjct: 74 DYRLVILNNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYEKLDGRKKIVKDLK 133 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 V I + +I++ + + I +A L+ D NELQKL+ Y Sbjct: 134 KIVEVIDANSPKESDTRKIIQQYVDEKRTEIDSDALDELILRTDNDLAQIINELQKLTVY 193 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 I V+ ++ + ++IN +QG + +I L ++ + Sbjct: 194 ASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLLLNQEQPLRINAAL 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311 + +F+LL ++ I+ E S K+ Q+ + P + + +S+R +N + L Sbjct: 254 VSQFRLLLQVKILMER-GFSQGKLAQELKA--HPYRIKLAMQSVRQFNIQSLENAYIGLV 310 Query: 312 KIDHRIHLARKKK 324 ++ ++ ++ Sbjct: 311 DLEEQLKTTQRDP 323 >gi|281356142|ref|ZP_06242635.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC BAA-548] gi|281317511|gb|EFB01532.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC BAA-548] Length = 358 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 117/359 (32%), Gaps = 39/359 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNIS---ITYHDPFSLVVLNALEIQKNI--STFWNEINS 76 +++ G D+ + E ++ ++ ++ E++ + F + + Sbjct: 3 KLYVICGDDEFAVKERSRALAAELAGGAPEESPAVEIIAGDSDELKPDAIVGKFLDAART 62 Query: 77 TSLFSKKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 S K++ + + + L+ + + + +++ Sbjct: 63 PSFLCSDKLVWLRHFPDFELFSAKSAAPVYLETAALLGQELPPDLTVLLDGFGFDVRKGF 122 Query: 128 RKIAEKFTSVL--------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + +V+ + Y D++ L I E KSI A Q L LGG Sbjct: 123 GKALKAAGAVIETLNVTKSSDKRYADDRR-LN--IREICQAAGKSIEPAAAQFLTETLGG 179 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D RNEL+KL SY + IT + + C T E A + + A+ L Sbjct: 180 DSGTLRNELEKLFSYTGDAPAITLNDCRAVCCRTPETVSWEFTGAIVSRNLPLALQLLSV 239 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF--EKIIQKTEKN------------ 285 L P L+ ++Q + + + I+ + + Sbjct: 240 LLRQGEPEIRLMGSLSGEYQKQIQTKLAMQQLKITRVSPRTFDSLPPSVKEEFPNNPLLK 299 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 I P + + E+ + + L + + + I+ Q I+ + + + + Sbjct: 300 IHPFRAYKVCEAAANYTDAELIRNLELVRNANRALVSGGGDRRIILEQLIIKLTRRSQR 358 >gi|270307493|ref|YP_003329551.1| DNA polymerase III, delta subunit [Dehalococcoides sp. VS] gi|270153385|gb|ACZ61223.1| DNA polymerase III, delta subunit [Dehalococcoides sp. VS] Length = 419 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 122/345 (35%), Gaps = 40/345 (11%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 L + ++IF GSD + E + Q K + + +L + + N + + Sbjct: 75 LLNLLYIFTGSDDFSLKERLKQIKLALGDESLSSANTTMLEGKNLTA--AELQNYVQTVP 132 Query: 79 LFSKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIII------K 117 + +++++ L + K D + + ++ K Sbjct: 133 FLAPARLVIVNGLLERFEGSKGKAAAKDTASKTSPDEFARALSNLPPTTLAVLLDYTSSK 192 Query: 118 SNEIK--------KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 + + +N L K+ V + +L + + +S A Sbjct: 193 DGDYREKEKVSALASNPLFKLVSPGAEVKHFAPLS--AQNLPGWVMQRAKQSSIQMSVPA 250 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 ++L +G D +E++KL Y +I E V++++ + I +++A + K Sbjct: 251 ARLLARFVGADLWTLSSEIEKLGLYAQG-RVIEEADVENMVGYAQEVNIFALVDAVLDCK 309 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + +A F A LL +++ +L+ + + + + +I + + + Sbjct: 310 VKDAQQSLTAFTAGGGSPGFLLFMLVRQLRLMVR-YTALKKRGLKEAEIFKAMGGSEYAL 368 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331 ++ Q + + N + ++ K+ I R + L ++ Sbjct: 369 RKTASQAACQ--NMDSLKAIYSKLLETDFNIKTGRFEPELAMGLL 411 >gi|167626871|ref|YP_001677371.1| DNA polymerase III subunit delta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596872|gb|ABZ86870.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 325 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 26/261 (9%) Query: 15 KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69 KN + +F+ G + +I ++ +QF K+ I+YHD ++N+ Sbjct: 11 KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHDL----------NEQNLDV 60 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + E++S SLFS K+I + +KK+ L + +I N +++ S +KK NT Sbjct: 61 LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSG-MKKQNTSA 119 Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K + + + DN I+++D + L S+++ A Q+L+ G+ IAS Sbjct: 120 KWFQSLEHRAIHISIFNPNIDNAINIIDYEAKQL---GLSLTQPAVQLLVQKTEGNLIAS 176 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + ++ LS E ++ I + + ++ A + + A+ + + L Sbjct: 177 KQIIKLLS--RQSTQTYDENTIRPFIHEHANFDVFDLSEALLSQQKTKALKILNSILTEN 234 Query: 245 MPSHALLHGFLQKFQLLEKIH 265 +L ++ +++ ++ Sbjct: 235 DKPPLVLWAIKRELRIISQLK 255 >gi|269961553|ref|ZP_06175915.1| DNA polymerase III, delta subunit [Vibrio harveyi 1DA3] gi|269833594|gb|EEZ87691.1| DNA polymerase III, delta subunit [Vibrio harveyi 1DA3] Length = 339 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 113/305 (37%), Gaps = 17/305 (5%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 V++ +G++ LI E I + F++ + + + ++ + SL Sbjct: 19 VYLIFGNEPLLIQESRQTIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALSL 72 Query: 80 FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 FS +++I +E + L + + ++++ +++ K K + Sbjct: 73 FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWFKALSGK 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 +SC + L ++ +++ Q+L G+ A L+KL+ Sbjct: 133 GDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-LY 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T +++ + + I+A + GK A + A + + L+ + Sbjct: 192 PDGELTVVRLEEALSRHNHFTTFHWIDALLAGKGNRAQRILRQLEAEGVETVILIRSVQK 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 +F L +H +S ++ +K + KR + +L + + + L + H Sbjct: 252 EFNQLLNMHRDLTQMGMS--QVFEKHR--VWQNKRPLYNAALTRLSASRICALLSLLAHA 307 Query: 317 IHLAR 321 A+ Sbjct: 308 EIKAK 312 >gi|257094625|ref|YP_003168266.1| DNA polymerase III subunit delta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047149|gb|ACV36337.1| DNA polymerase III, delta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 334 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 108/286 (37%), Gaps = 18/286 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + L+ E + + D ++ + ++ S SLF Sbjct: 18 PVYLVYGDEPLLVIEAADAIRAAARRNGFDEREVLTATGGFNWND---LYHAAGSMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI----KKNNTLRKIAEKFT 135 +K+I I + L+E + + ++++ + +K+ + +A Sbjct: 75 GRKVIDLRIPTGKPGRDGSAALQEYCARPSPDSLLLVTLPGVDWRDEKSAWMSALAAAGV 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-SY 194 V I L I L ++S + E + + + G+ +A+ E+ KL+ Y Sbjct: 135 VVKLIPPL---VADLPAWIAGRLRRQKQSAAAEGLRFIAERVEGNLLAAHQEILKLAVLY 191 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + +++ + + ++ + A + G + D +L Sbjct: 192 --PRGALSLEQIREAVLNVARYDLDGLREAMLAGDVARLTRTIDGLQQEGEAPLLVLWAM 249 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + ++L +I+ S + ++++ + +++ +++ +++ Sbjct: 250 TEDVRVLAQINAGL-AGRQSLDLLLKEAR--VWGVRQPLVRRAVQR 292 >gi|258621971|ref|ZP_05717000.1| DNA polymerase III, delta subunit [Vibrio mimicus VM573] gi|258585724|gb|EEW10444.1| DNA polymerase III, delta subunit [Vibrio mimicus VM573] Length = 342 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E +K F + + + S+ ++ + SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADSGLDWSSVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + I+++ ++ K + + Sbjct: 74 SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + I+A ++GK A + + + L+ ++ Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWIDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSTALFRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|188996127|ref|YP_001930378.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931194|gb|ACD65824.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 331 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 131/320 (40%), Gaps = 24/320 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I++ + +++ NL V I YG + K + + + V Sbjct: 1 MSEIKASQLLKEF--NLSQLKPVLIIYGDEY--------LTKALVVEKFKSVLPVKVYWG 50 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIII-----KNICNHI 113 E+ + ++F N + S LFS K I++ + T+K D L++II K + Sbjct: 51 DEL--DYTSFRNHLFSKDLFSSSKAIVVRDFEAFTDKLKKDELKQIIEDIKNIKLPDRLV 108 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 +I+ ++ K K K +V + + ++ L K++S E + L Sbjct: 109 LIVNLEKLDKEP--YKSLLKLGNVDVVISKKLTFQGFLTSLKNKLAKEGKTVSDENLKYL 166 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + L D ++NE++KL Y + IT++ + ++ + ++ + I +A Sbjct: 167 ASLLNNDLTIAKNEVEKLLLYVGDKKEITKEDIDAVVTPVFEENVFNFLDKFFKKDI-SA 225 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + L + + + L + + + I+ E N S E+ + K N P+++ Sbjct: 226 LKIFINLLNNGVHPFEIQSLILSQLEKALQTKILIEAGN-SLEEALNKAGIN-HPLQKVN 283 Query: 294 LQESLRIWNKNLVRETLHKI 313 + L+ +K + + L + Sbjct: 284 ISNILKNLSKEEMVKLLDNL 303 >gi|147677202|ref|YP_001211417.1| DNA polymerase III, delta subunit [Pelotomaculum thermopropionicum SI] gi|146273299|dbj|BAF59048.1| DNA polymerase III, delta subunit [Pelotomaculum thermopropionicum SI] Length = 358 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 106/294 (36%), Gaps = 25/294 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG + L + + + K++++ + +++ + + + + Sbjct: 18 PVYLFYGEETYLKEQAVLRLKEHLAGGDRSGLNFDLVDGETVA--PAEIAARAETLPFLA 75 Query: 82 KKKIILIEN--------------LSTEKKVLDC-----LEEIIIKNICNHIIIIKSNE-I 121 K++++++N EK L + + + ++ + E + Sbjct: 76 GKRLVVVKNPAFLQPAGKTGDGPAGDEKGAKSSGKESPLLKYLENPPSSTCLVFVAGESV 135 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 + L + +K + + + L + + + + A LL G Sbjct: 136 DRRRRLFQAIKKCGQAVEFTFLS--RGELTRWLVQKAGAEGRRFAAGAADALLDAAGPSL 193 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 EL+KL SY IT + V+ + I +++A + A+ L Sbjct: 194 QTLVLELEKLFSYTAGQKFITVEDVRAVCPPGPEENIFAVVDAVGNRRCGEALAGIKDML 253 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 A++ P +L ++F+LL ++ + E +I + + ++ LQ Sbjct: 254 AAREPPLRILAMITRQFRLLLQVRELLE-QGCPPGRIPDRLGVHPYTARKAALQ 306 >gi|300722321|ref|YP_003711606.1| DNA polymerase III subunit delta [Xenorhabdus nematophila ATCC 19061] gi|297628823|emb|CBJ89401.1| DNA polymerase III, delta subunit, probably ATP hydrolase [Xenorhabdus nematophila ATCC 19061] Length = 343 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 121/311 (38%), Gaps = 23/311 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ +G++ L+ E + +K + + F AL+ + ++ S SLF Sbjct: 18 RSIYLLWGNEPLLLQESQDSIRK---VAEQNGFMEHFTFALDNHTDWDEIFSLCQSLSLF 74 Query: 81 SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + ++ +L+ + + L ++ + ++I+ + + L K E Sbjct: 75 ASRQSLTLLLPENGPNAAMAERLIKLSELLHPDILLIL------RGHKLTKAQENSPWFK 128 Query: 139 AIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 AI C + L + + S+ EA Q+L G+ +A L++L Sbjct: 129 AIGKNGVYVTCLAPEQNRLPQWVSQRAKNRGLSLEDEANQLLCYCYEGNLLALAQALERL 188 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S D +T V++ + D ++A + GKI A + S LL Sbjct: 189 SL-LHPDNQLTLHRVEEAVNDAAHFSPYHWVDALLTGKIKRAWHILKQLRQEDTESVILL 247 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ + I + + + + + +R +L ++L+ ++ ++ +H Sbjct: 248 RTIQRELMLLLVLK--RQSTTIPLKTLFDQHK--VWQNRRPLLIDALQRLSQQDLQSAIH 303 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 304 LLTQMELRVKQ 314 >gi|282920135|ref|ZP_06327860.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9765] gi|282594483|gb|EFB99468.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9765] Length = 324 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 113/299 (37%), Gaps = 18/299 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK +D L E I K ++I+ + N++ + L Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + I + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL + + I +Q V II + + + + K AI L + K Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIYLVKDLITMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL ++L + I+ + S ++I + + P + + +R + + + Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDEL 292 >gi|262394988|ref|YP_003286842.1| DNA polymerase III delta subunit [Vibrio sp. Ex25] gi|262338582|gb|ACY52377.1| DNA polymerase III delta subunit [Vibrio sp. Ex25] Length = 339 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFAVDASIDWNQVYDCFQAMSLFSN 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +++I +E V L+ + + +++I +++ K K + + Sbjct: 76 RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L I+ +++ Q+L G+ A L+KL+ D Sbjct: 136 VSCLSPDLQRLPMFIQARCRTLGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPDG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T +++ + + I+A + GK A + A + + L+ ++ Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGVETVILIRSVQKELS 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L +H ++ ++ +K + KR + +L + + + L + Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310 Query: 320 AR 321 A+ Sbjct: 311 AK 312 >gi|223939234|ref|ZP_03631115.1| DNA polymerase III delta [bacterium Ellin514] gi|223892066|gb|EEF58546.1| DNA polymerase III delta [bacterium Ellin514] Length = 381 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 128/383 (33%), Gaps = 58/383 (15%) Query: 13 STKNLFLSHFVFIFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNIS 68 + + + G D+ + + Q + + H+ V N+ E K I+ Sbjct: 2 PSSAAKQPASLVLVCGDDEFAVKQRAKQLFQQWSQELGGMDHEMIDAGVSNSGEALKVIA 61 Query: 69 TFWNEINSTSLFSKKKIILIEN--------LSTEKKVLDCLEEIIIKNI----CNHIIII 116 + + F K + ++N ++ + V + L E+ + N ++I Sbjct: 62 RLREALQTLPFFGGGKAVWLQNCNFLGDERAASAQAVTETLGELAQELKDFSWGNVRLLI 121 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH----LMDLIEESLLIGQKSISKEAKQI 172 + ++ K K +K V + + + + ++L +K IS EA Sbjct: 122 SAGKVDKRKVFYKTIDKLGEVESFAGLSIDDKDWMQQAETMALQTLRGLKKEISDEALAE 181 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L+AN+G +E +KL+ Y E I V I + +A + Sbjct: 182 LVANVGPSARQLNSEAEKLALYVGERRDIELDDVAAICTRNKSARAFALGDALGDRDLPK 241 Query: 233 AIMLADFFL-----ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE---- 283 + D L S+ LL+G + K + + + + I + Q+ + Sbjct: 242 LLRRLDEELWEMKFDSQKSEIGLLYGLISKVRAMILLKEMVREGWIKPAQDYQRFKAQLE 301 Query: 284 -------------------KNIIPMKRNILQESLRIWNKNLVRETLHKI---DHRIHLAR 321 I+ + +++ + + + + R+ + Sbjct: 302 RVPVEKLPEDKRFNPLSINPYILFKAFP----QSQRYSQPELIRAMDLLLKCNQRLISSS 357 Query: 322 KKKYLEKNIIFQTILYIAQTACK 344 + L I+ QT++ I +A + Sbjct: 358 LDEAL---ILQQTLIEIVGSAKQ 377 >gi|302872357|ref|YP_003840993.1| DNA polymerase III, delta subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575216|gb|ADL43007.1| DNA polymerase III, delta subunit [Caldicellulosiruptor obsidiansis OB47] Length = 335 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 135/349 (38%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSYAIVGGNLN--NIVKF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + K+++ +N ++ + ++ + + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPKVLIFKNFFKYASTNSSLNLSAIIDNLKNFKSDST 115 Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II ++ E K + L++IA V PD L+ ++ + K+IS+ Sbjct: 116 YIIFKEYEAKENKFFSALKQIAYSAEFVQ--PSMPD----LVKWVQNVMSKEGKAISENM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNHLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + +L L+ F++L + ++E + K + E + Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + ++ + K ++ +K + ++ + + I Sbjct: 287 DK--YKKQAESLTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333 >gi|323340656|ref|ZP_08080908.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus ruminis ATCC 25644] gi|323091779|gb|EFZ34399.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus ruminis ATCC 25644] Length = 365 Score = 93.1 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 126/316 (39%), Gaps = 18/316 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G ++ E+ N +S F+ + + E +++ N+ S F Sbjct: 42 IYLILGKERYCSEEIKNALLGKLSPQEK-EFNSSIYDMEET--PLASALNDAMSVPFFGD 98 Query: 83 KKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 ++I+++ N L+ EKK +D L + + + ++ + K + + + Sbjct: 99 RRIVIVNNPYFLTGEKKKNKVEHDIDGLLKYLEYPLETTTLVFIAPYEKLDERKKVVKTL 158 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + P +I + +I + L SI +A L+ + + NEL KL Sbjct: 159 KKVADVVENQPLKEIQVRQIINQRLKKNGLSIEPKAFDTLMERTNAEISLAMNELDKLIL 218 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 C ++ +I+E +I + + +++ + +I + L SK A+ Sbjct: 219 LCKDEQVISEAEADRMISRSLEQNVFDLVALVLSRNTQKSIEMYHDLLLSKEEPIAINAI 278 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---L 310 + +F+LL ++ I+K S I + I P + + +++ + + ++ L Sbjct: 279 LIGQFRLLLQVSILK-RHGFSQGSITTALK--IHPYRVKLALRTVQKFQQEDLKNAYLGL 335 Query: 311 HKIDHRIHLARKKKYL 326 K++ R+ + L Sbjct: 336 VKVEKRLKSTDQDPEL 351 >gi|152976754|ref|YP_001376271.1| DNA polymerase III subunit delta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025506|gb|ABS23276.1| DNA polymerase III, delta subunit [Bacillus cytotoxicus NVH 391-98] Length = 336 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 126/322 (39%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG++ I E I+ F++V + E + + + F Sbjct: 15 PFYLLYGTEAYFINETIDLITVEALAEEDRDFNIVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++KI+LI++ L+++K+ L+ LEE I + I+I + K + + Sbjct: 73 ERKILLIKSPLFLTSQKEKLEQNIKILEEYIAEPSPFSIMIFIAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I + + + A +LL +G + E+ KL+ Y Sbjct: 133 KTAEVVEANAMQVQDVRKWIVKRAEEVHVHVEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGTGGDITTKLVSELVPKSVEQNVFALTEKVVKKDIAGAMKILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + ++++ +++ + ++ Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKLFSFEELKKVIFELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|23099432|ref|NP_692898.1| DNA polymerase III subunit delta [Oceanobacillus iheyensis HTE831] gi|22777661|dbj|BAC13933.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 337 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ + EL K + SL LN + IQ+ + + F Sbjct: 16 PVYLAFGTESYFLEELKQALIKQVLNGDTSNLSLYDLNEMPIQE----VLTDAETFPFFE 71 Query: 82 KKKIILIENLSTEKKVLDCL---------EEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 +KK+I+ N S K D L EE + +++I + ++ + + K Sbjct: 72 EKKLIIATNASFLKARPDKLSFEHNTSYLEEYVQNPPDYTVLLIIAPYEKLDERKKITKQ 131 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + ++ C + +E + ++ +AK +L A + + ++E++K Sbjct: 132 LKNNSQLV--DCQEIREQDARKWLESIISKNNITMDAKAKDMLEAEVTTNIQLLQSEIEK 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ Y E ++E+ + +I T +++A + G+I A+ + A+ Sbjct: 190 MALYVGEGGHVSEEDAQRLISHTPTSTSLAMVDAVMHGEIQRAMRIYKDLEKMNEDPIAM 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305 + +F+++ ++ ++K+ + ++ ++ + I + + + + Sbjct: 250 IGLLSYQFRMILRVKLMKQ-KGYTQFQMQKQIGAHPYVIKIAMSREKNISQ-------DK 301 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + + ++ K+ +EK++ F+ +L Sbjct: 302 LEQIIQRLAETD-SVMKQGKMEKSLAFELLL 331 >gi|269965471|ref|ZP_06179590.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B] gi|269829950|gb|EEZ84180.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B] Length = 339 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFAVDASIDWNQVYDCFQAMSLFSN 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +++I +E V L+ + + +++I +++ K K + + Sbjct: 76 RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L I+ +++ Q+L G+ A L+KL+ D Sbjct: 136 VSCLSPDLQRLPMFIQTRCRTLGLKPDQQSLQMLAQWHEGNLFALTQSLEKLAL-LYPDG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T +++ + + I+A + GK A + A + + L+ ++ Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGVETVILIRSVQKELS 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L +H ++ ++ +K + KR + +L + + + L + Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310 Query: 320 AR 321 A+ Sbjct: 311 AK 312 >gi|238752601|ref|ZP_04614074.1| DNA polymerase III subunit delta [Yersinia rohdei ATCC 43380] gi|238709192|gb|EEQ01437.1| DNA polymerase III subunit delta [Yersinia rohdei ATCC 43380] Length = 314 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 101/266 (37%), Gaps = 10/266 (3%) Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 T ++ + SLF+ ++ +L+ + + + L ++ + ++I+++N++ K Sbjct: 33 DTIFSLCQALSLFASRQTLLLNFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 92 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + + +SC + L + + A Q+L G+ +A Sbjct: 93 ENSLWFKALSKNGVLVSCQTPEQAQLPRWVNSRAKSLNLEVDDAAIQLLCYCYEGNLLAL 152 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L++LS D +T V+ + D ++A + GK A + Sbjct: 153 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 211 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ L + E + + + + + +R ++ ++L+ + Sbjct: 212 SEPVILLRTLQRELLQLLTLKRRME--QVPLRTLFDQFK--VWQNRRPLMTQALQRLSMQ 267 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330 +++ +H + R K+ ++I Sbjct: 268 QLQQAVHLLAQI--EVRLKQDYGQSI 291 >gi|121998922|ref|YP_001003709.1| DNA polymerase III subunit delta [Halorhodospira halophila SL1] gi|121590327|gb|ABM62907.1| DNA polymerase III, delta subunit [Halorhodospira halophila SL1] Length = 334 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 37/307 (12%), Positives = 107/307 (34%), Gaps = 25/307 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V G + L E + ++ H ++ ++A + +S SLF Sbjct: 19 RVCFIAGEEPLLQREATDAVRRAAREAGHSEREVLDVDAGF---DWGWLTEAASSLSLFG 75 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKFT 135 +++ + + + + L+ + ++++ S ++++ R +AE Sbjct: 76 DRRLLEVRMPGGKPGRDGAEALKAYCQDPPEDTVLLLTSGRLERSARESAWARALAEAGI 135 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + C+P + + E L EA ++ G+ +A+ ++KL Sbjct: 136 F---VYCWPVPGRDMPRWVAERLRRAGLQADPEAAALIAERSEGNLLAADQAVEKLRLLV 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + + + D+ ++++ +A + + A+ + + +L Sbjct: 193 GSGTAVDVETAAGALADSARYTVDDLADAALDAEWTRALRVLATLREEGVQPPLILWALA 252 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNK---NLVRETLH 311 + ++ ++ + + E+I +R L+++ R + + H Sbjct: 253 RDIRVAARLAAGADEGVLQRERI---------WKRRVGRLRQAARRHPAGAWRQLLQRCH 303 Query: 312 KIDHRIH 318 ++D I Sbjct: 304 RVDRAIK 310 >gi|58582950|ref|YP_201966.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624797|ref|YP_452169.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577784|ref|YP_001914713.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427544|gb|AAW76581.1| DNA polymerase III delta subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368737|dbj|BAE69895.1| DNA polymerase III delta subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522236|gb|ACD60181.1| DNA polymerase III, delta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 342 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 101/287 (35%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K AE + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + Q ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KTLDLQAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|91228818|ref|ZP_01262725.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01] gi|91187623|gb|EAS73948.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01] Length = 339 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F +++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFSVDASIDWNQVYDCFQAMSLFSN 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +++I +E V L+ + + +++I +++ K K + + Sbjct: 76 RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +SC + L I+ +++ Q+L G+ A L+KL+ D Sbjct: 136 VSCLSPDLQRLPMFIQTRCRTLGLKPDQQSLQMLAQWHEGNLFALTQSLEKLAL-LYPDG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T +++ + + I+A + GK A + A + + L+ ++ Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKTNRAQRILRQLEAEGVETVILIRSVQKELS 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L +H ++ ++ +K + KR + +L + + + L + Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310 Query: 320 AR 321 A+ Sbjct: 311 AK 312 >gi|229523254|ref|ZP_04412661.1| DNA polymerase III delta subunit [Vibrio cholerae TM 11079-80] gi|229339617|gb|EEO04632.1| DNA polymerase III delta subunit [Vibrio cholerae TM 11079-80] Length = 342 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNALYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|188990939|ref|YP_001902949.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. campestris str. B100] gi|167732699|emb|CAP50893.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 342 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 113/332 (34%), Gaps = 33/332 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGISEREVFDADGREF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + S K + + + +++I +N+ K + K A+ + Sbjct: 76 PRRLVEVRMPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAQGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + ++ ++ D + + T G+ + + A AL+ +++ Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAENTFSGQPAAVVRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIWNK--------N 304 + + + ++ I ++ + +L R W + + Sbjct: 254 LRTASL-AKVQAGGGNLGAEMKAQG--IWESRQAPFKRALQRHPEPRRWERFVAEAGLVD 310 Query: 305 LVRE---------TLHKIDHRIHLARKKKYLE 327 + + L ++ + AR + L Sbjct: 311 RMAKGRAEGDPWVALERLLVAVAEARAVRLLA 342 >gi|288561734|ref|YP_003429140.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4] gi|288548366|gb|ADC52248.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4] Length = 321 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 128/327 (39%), Gaps = 17/327 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + LI + + D F+ + E ++ + + S Sbjct: 3 PIYLIFGDEPFLIEDNRFRITHEAVGEV-DEFNSSSFDMEE--DELTKAIGDAQTLSFMG 59 Query: 82 KKKIILIEN----LSTEKKV---LDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAE 132 +I+ ++N + K+ LD L + + +++ ++++ + KI + Sbjct: 60 GHRIVTLKNCTFLTGNKTKLEQDLDALIRYVEEPNDMATLVLTLHADKLDARKKISKILK 119 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V I+C L I+ I A + L+ LG D A + E+QK+S Sbjct: 120 KSENVEIITCQSLPPHKLKQWIQAEAESQAAGIDPIAVESLIKLLGSDLTALKQEIQKIS 179 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E +I+E+H+ ++ I +I+ I+ AI L L K ++ Sbjct: 180 LY-NEGAIISEEHISQLVTSNIEESIFVLIDKIIKKDKQQAIELLSDMLKKKEEPIKIIA 238 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +++ L + S +I ++ + P++ + E+ + ++ +++ L Sbjct: 239 LLVRQI-RLILLVGELSSRGKSINQIAKELNMHSYPVQ--LAAENTQYYDPKSLQKHLVD 295 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIA 339 + + H K+ K I + + + Sbjct: 296 LIYIDHQI-KRGQTSKTIALEQFIAVI 321 >gi|153835762|ref|ZP_01988429.1| DNA polymerase III, delta subunit [Vibrio harveyi HY01] gi|148867553|gb|EDL66884.1| DNA polymerase III, delta subunit [Vibrio harveyi HY01] Length = 339 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 113/306 (36%), Gaps = 19/306 (6%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 V++ +G++ LI E I + F++ + + + ++ + SL Sbjct: 19 VYLIFGNEPLLIQESRQAIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALSL 72 Query: 80 FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 FS +++I +E + L + + ++++ +++ K K K S Sbjct: 73 FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWF-KALSA 131 Query: 138 LA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 +SC + L ++ +++ Q+L G+ A L+KL+ Sbjct: 132 KGDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-L 190 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D +T +++ + + I+A + GK A + A + + L+ Sbjct: 191 YPDGELTVVRLEEALSRHNHFTTFHWIDALLAGKANRAQRILRQLEAEGIETIILIRSVQ 250 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++F L +H +S ++ +K + KR +L + + + L + H Sbjct: 251 KEFNQLLNMHRDLTQMGMS--QVFEKHR--VWQNKRPFYNAALTRLSASRICALLSLLAH 306 Query: 316 RIHLAR 321 A+ Sbjct: 307 AEIKAK 312 >gi|219670322|ref|YP_002460757.1| DNA polymerase III subunit delta [Desulfitobacterium hafniense DCB-2] gi|219540582|gb|ACL22321.1| DNA polymerase III, delta subunit [Desulfitobacterium hafniense DCB-2] Length = 332 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 12/277 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E + Q KN S V ++YG ++ I E Q KN + S + + + + Sbjct: 3 EIDQVRQGIVKNQIPS--VNLWYGEERFFIQE-ALQLLKNSYLAQDPSGSGIEILSGKST 59 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE 120 N+ S F K+I++E++ + L+ ++ + Sbjct: 60 G-PEQIVEIANTVSFFGG-KLIIVEDIPYFQDGQGDALEPFFAYFENPNPGTCLVFLAQS 117 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + + K EK S+L P + ++ L K++ + K + L G Sbjct: 118 VNRGRKFFKAIEKKGSILEFVS-PKRQQEWSAWLDRELAARGKTMKPQVKALFLEWGGHQ 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A EL KL+ + I + V+ ++ + E+++A A+ Sbjct: 177 VGALSQELDKLALFVEG-KEIRTEDVRSLVPQAVEATVFELLDAVAARSSKEAVQKLQQV 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 L S +L ++ +LL +++ + E Sbjct: 236 LRQ-EHSLKVLTLLSRQVRLLLGARAMRQQGRGAEEA 271 >gi|312127089|ref|YP_003991963.1| DNA polymerase III subunit delta [Caldicellulosiruptor hydrothermalis 108] gi|311777108|gb|ADQ06594.1| DNA polymerase III, delta subunit [Caldicellulosiruptor hydrothermalis 108] Length = 335 Score = 93.1 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 136/349 (38%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVKF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + ++++ +N ++ + ++ I + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSNLNLSAIIDNIKNFRSDST 115 Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II ++ E K + L++IA L PD L+ ++ + K+IS+ Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAE--LVQPSMPD----LVKWVQNVMSKEGKTISENM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + +L L+ F++L + ++E + K + E + Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + + ++ + K ++ +K + ++ + + I Sbjct: 287 DK--YKKQAESFTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333 >gi|28897499|ref|NP_797104.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus RIMD 2210633] gi|260878359|ref|ZP_05890714.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AN-5034] gi|28805711|dbj|BAC58988.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308090265|gb|EFO39960.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AN-5034] Length = 339 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 115/303 (37%), Gaps = 13/303 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 +++I +E + L+ + + +++I ++ K K K + Sbjct: 76 RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +SC + L ++ +++ Q+L G+ A L+KL+ D Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + I+A + GK A + A + + L+ ++F Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 L +H ++ + + ++ +K + KR + +L + + + + + Sbjct: 254 NQLLSMH--QDLTQMPISQVFEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEI 309 Query: 319 LAR 321 A+ Sbjct: 310 KAK 312 >gi|113474113|ref|YP_720174.1| DNA polymerase III subunit delta [Trichodesmium erythraeum IMS101] gi|110165161|gb|ABG49701.1| DNA polymerase III, delta subunit [Trichodesmium erythraeum IMS101] Length = 316 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 120/320 (37%), Gaps = 17/320 (5%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS----T 93 +N +++ F+ + N+ + S + + + + + Sbjct: 5 VNALRQSFLDPIWTSFNYDKILPTT--DAPQIALNQAMTPPFGSGYRFVWLVDTTITQHC 62 Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEKFTSVLAISCYPDNKI 148 + +L+ LE + + +++ + +K ++K A K I + Sbjct: 63 SESLLEDLEITLPQVPETTVLLFTTPNKPNQKLKSTKLIQKWA-KVRDFSLIPPWKTEL- 120 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 L ++E ++ L LG DR +EL KL Y +D ++ + + Sbjct: 121 -LEQQVKEIAQEMGVKLTPTGITFLAEALGNDRQKLHSELTKLQLYISQDTVLDLEVITT 179 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 +I + ++ A G+ A+ L + +A ++ + +F+ + ++ Sbjct: 180 LIGSQTQSSL-KLAAAIRSGETVKALELVENLIAHNEHPLRIVATLVGQFRTWLWVKLMI 238 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 E EK I + + P + L++ ++ + N +++TL + + ++ K+ E Sbjct: 239 EIGEKD-EKAIAQAAEINNPKRVYFLRQEVKSLSLNQLQKTLPLLLE-LEVSLKQGKEEI 296 Query: 329 NIIFQTILYIAQTACKNNNF 348 +I+ I+ + Q NF Sbjct: 297 SILKTKIIELCQLLSSKRNF 316 >gi|78048491|ref|YP_364666.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926332|ref|ZP_08187664.1| DNA polymerase III subunit delta [Xanthomonas perforans 91-118] gi|78036921|emb|CAJ24614.1| DNA polymerase III delta subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543283|gb|EGD14714.1| DNA polymerase III subunit delta [Xanthomonas perforans 91-118] Length = 343 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 109/308 (35%), Gaps = 13/308 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M + + +S++ L V++ G + + E + + + + Sbjct: 1 MMELRPEQLAGQSSQPLQ---PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADG 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 E + + N+ SLFS ++++ + + K + + + +++I + Sbjct: 58 REF--DWNQLDASFNAPSLFSPRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITA 115 Query: 119 NEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 N+ K + K AE + I+ + L D IE L A Q L + Sbjct: 116 NDWSKAHH-GKWAEAVGRIGTIAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERV 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ E+ KL+ + + + ++ ++ D + + T+ G+ I + Sbjct: 175 EGNLLAAAQEIDKLALLA-DGKTLDLEAMESLVADAARYDVFRLAETTLSGQPAAVIRML 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 AL+ +++ + + + + ++ + ++ + + Sbjct: 234 AGLRGEGEAVAALMPILIKELLRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRA 290 Query: 298 LRIWNKNL 305 L+ + Sbjct: 291 LQRHPEPH 298 >gi|91776509|ref|YP_546265.1| DNA polymerase III, delta subunit [Methylobacillus flagellatus KT] gi|91710496|gb|ABE50424.1| DNA polymerase III, delta subunit [Methylobacillus flagellatus KT] Length = 338 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 93/250 (37%), Gaps = 7/250 (2%) Query: 75 NSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 S SLF+ ++I I + + L + I + + I+ +++++ Sbjct: 68 QSISLFASRRILEIAVPSGKPGVDGGKALTALAEHAIPDTVTIVILPKLERDAKNSAWFA 127 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++++ + L I L ++ +E + L + G+ +A+ E+QKL Sbjct: 128 ALENHGVSLALHEVAPSALPQWIANRLAGQGQNTDQETLEFLAHQVEGNLLAAHQEIQKL 187 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + V++ + + ++ +A + G +A+ + A++ Sbjct: 188 GL-LYPEGTLDGSKVREAVLNVSRYDAFQLGDAVLSGDSEHAVRILHGLREEGAQPVAIM 246 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + L K+ E + +Q+ I ++N+++ +L + + L Sbjct: 247 SALAWVLRGLVKVKY-AESRGGNLNSAMQQAR--IYGERQNLVKRALSRLSMRQLEAALQ 303 Query: 312 KIDHRIHLAR 321 K+ A+ Sbjct: 304 KLAEIDKAAK 313 >gi|119509869|ref|ZP_01629012.1| hypothetical protein N9414_11709 [Nodularia spumigena CCY9414] gi|119465478|gb|EAW46372.1| hypothetical protein N9414_11709 [Nodularia spumigena CCY9414] Length = 331 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 126/336 (37%), Gaps = 18/336 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D I + + + I F+ L+ + I+ NE+ + + Sbjct: 2 PIYVYWGEDDFAIEKAVTILRDRILDPLWTSFNYTSLSPDQPDAAIAGL-NEVMTPPFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 +++ + N + + +L L + N +++ + +K L+K A+ Sbjct: 61 GGRLVWLINTTLCQHCPENILAELTRTLSVIPENSWLLLTTRNKPDERLKSTKLLKKSAD 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +F I + + L+ + + ++ +IL +G D NE++KL Sbjct: 121 EFREFPLIPPWKIDL--LVQSVNQVAQTVGVKLTNRTAEILAEAVGNDTRLLYNEMEKLR 178 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + + + + ++ +T ++ + A G+ A+ + + + P ++ Sbjct: 179 LYTSDRGKPLDVETITQLVRNTTQNSLQ-LAAAIRMGETAKALTILADLINAAEPGLKIV 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F+ + I E + + I K + P + LQ+ ++ + + L Sbjct: 238 ATLIGQFRTWLLVKIAMETGERNP-QAIAKLAEINNPKRIYFLQQEVKSLSVQQLISCLP 296 Query: 312 KIDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNN 346 + K+ + QT ++ + Q + Sbjct: 297 LLLE--LEVSLKQGATEAQTLQTKVIELCQVCQRGG 330 >gi|255030343|ref|ZP_05302294.1| DNA polymerase III subunit delta [Listeria monocytogenes LO28] Length = 250 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 3/176 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N+ L IE L +S+EA L+ G + NELQKL YC + IT Q Sbjct: 53 NENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLMLYCFDTKEITIQD 112 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + I +++ I I A+ + L K +L +F+LL ++ Sbjct: 113 VESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLK 172 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 ++ E S ++ K + + P + + + + + + + + L ++ + Sbjct: 173 LL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMK 225 >gi|309775364|ref|ZP_07670369.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916881|gb|EFP62616.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 322 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 122/327 (37%), Gaps = 16/327 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG ++ L+ E + + K + L + ++ T + + FS Sbjct: 6 YVLYGEEQYLLQESLTRIVKEHVPDAN---ELNKIVYDADITDMETILEDATTIPFFSAC 62 Query: 84 KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 KIIL+ + + E V E + +++ + +K + +KI +K + Sbjct: 63 KIILVYHANFLGTANEHAVDTAALERYLDQPMESTVMVLIGDFEKLDARKKIVKKVQKTC 122 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++ ++E + + A Q LL L D + EL+KL Y Sbjct: 123 RVLQYRKLDEQGKYSYVQEQIKKRGLQVEPSAMQALLNRLPLDIRTIQTELEKLELY--- 179 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +I+ V+ ++ + +++NA ++ + + + + L+ + Sbjct: 180 GGMISADVVEKLVTRPLEEDVFQLVNAVVERNLKKSFHMWQDLCVLNKDAIYLIALLASQ 239 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F+ L ++ + + I + + P + + ++ + + + E L ++ + Sbjct: 240 FRFLYEVKALM-LQGKGKDAIKDELKA--HPYRVQLTMKTAQRLSIGYLMEILEQL-ATL 295 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344 K L+K + F+ L Q + Sbjct: 296 DQNLKAGRLDKKLGFEMFLLGIQGVRQ 322 >gi|285019238|ref|YP_003376949.1| DNA polymerase III delta subunit protein [Xanthomonas albilineans GPE PC73] gi|283474456|emb|CBA16957.1| probable dna polymerase III delta subunit protein [Xanthomonas albilineans] Length = 344 Score = 92.7 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 50/353 (14%), Positives = 119/353 (33%), Gaps = 23/353 (6%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + + + H V++ G + + E + + + + + Sbjct: 2 ELRPEQLLTQPAAQPL--HPVYLIAGPETLRVLEAADAVRARARAAGIGEREVFDADGRD 59 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + ++ NS SLFS +++I + + K+ + + + +++I NE Sbjct: 60 FDWD--QLYSSFNSPSLFSPRRLIELRLPSGKPGKEGSEVIAAFCADPPPDVVLLITCNE 117 Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + K A+ + I+ + L D IE L A Q L + G Sbjct: 118 WSKAHQ-GKWADAVGRIGVIAVAWAIKPHELGDWIERRLRGKGLRADAGAVQRLAERVEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E+ KL+ + ++ ++ D + + AT+ G+ + Sbjct: 177 NLLAAAQEIDKLALLSDGQG-LDVAAMESLVADAARYDVFRLAEATLGGQAPAVRRMLAG 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL- 298 A ALL +++ + ++ ++ + I ++ + +L Sbjct: 236 LRAEGEAVAALLPILIKELLRTAVLAKVQAAGGNLAAEMKAQ---GIWEARQAPFKRALQ 292 Query: 299 -----RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 R W +ID +A+ + + I + +L A Sbjct: 293 RHCAPRRW--ERFAAEAGRID---RIAKGRADGDAWIALERLLLAVAEARAVR 340 >gi|289668265|ref|ZP_06489340.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 342 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K E + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWTEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|88798828|ref|ZP_01114410.1| DNA polymerase III, delta subunit [Reinekea sp. MED297] gi|88778308|gb|EAR09501.1| DNA polymerase III, delta subunit [Reinekea sp. MED297] Length = 347 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 115/291 (39%), Gaps = 9/291 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V G + L+ E + + + + ++ ++A + + + S SLF Sbjct: 19 PVIWLSGDEPLLLIEAGDAVRASATAQGISERRVLEVDA---RWDGADLIAANQSMSLFG 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139 ++++I + K L E + +++++I S I+ + K + S Sbjct: 76 ERELIELRLQAKLSDKGRKALLEYVHSANPDNLLLIVSERIEAAQSKAKWFTQVQESGWW 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + +P L I + + +A +L + G+ +A++ E+ KL+ E+ Sbjct: 136 VPIWPIEYSQLPGWIAQRIKQAGLQAEPDAVSLLAERVDGNLLAAKQEIDKLALLA-EEG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT + + + D+ + ++ ++ ++G + A+ + + +L ++ + Sbjct: 195 GITTELILASVSDSSRYTVFDLSSSFLRGDLSRALKVLHTLESEGTEPPVILWLISRELR 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L+ ++ + + +K I +++ Q +++ + ++ L Sbjct: 255 LVLEL-AEAHARGQALNGLFKKLR--IFEKRQSDYQRAVQRAPASHYQQCL 302 >gi|327393107|dbj|BAK10529.1| DNA polymerase III delta subunit HolA [Pantoea ananatis AJ13355] Length = 343 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 112/302 (37%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + + + + L+A Q + + + S SLF++ Sbjct: 21 YLLTGNEPLLLQESADAIRASALAQGFEEHLSFTLDA---QTDWDSLFMNCQSLSLFAQH 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + + ++ + + L ++ + ++I + ++ K + + + Sbjct: 78 QTLTLQFPENGPNAAIAEQLIKLAPLLHADILLICRMAKLSKAQENSAWFKALSAHAVLV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L + + I A Q+L G+ +A L++LS D Sbjct: 138 PCQTPEQAQLPRWVVSRAKTLKLDIDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A+ + + LL + Sbjct: 197 LTLPRVEAAVSDAAHFTPYHWVDALLGGKSRRALHILQQLEREESEVAILLRTLQRDLMT 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L +H+ + S ++ + I +RN+ E+L+ + + +++ +H + Sbjct: 257 L--LHLQRHQSQQPLRTLMDQQR--IWQNRRNLFTEALQRLDASRLQQAIHLLMQIELTL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|226311589|ref|YP_002771483.1| hypothetical protein BBR47_20020 [Brevibacillus brevis NBRC 100599] gi|226094537|dbj|BAH42979.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 345 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 115/305 (37%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L + + +K + ++ + + E +S + + Sbjct: 17 PIYVLYGPESFLAEDFLAVARKEMIDPEFMDLNMSMYDCTET--GLSEILQDAETLPFMG 74 Query: 82 KKKIILIENL---STEKKVL------DCLEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130 + ++++ + K D L + + +I+ +++++ + L K Sbjct: 75 EHRLVIARQAYFLTGSKPSTKVESDPDALLDYLQNPPPYTTLILHTEADKLDERKKLVKT 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ V+ D L +E Q I ++ L+ +G + E++K Sbjct: 135 LQQKAKVIPFPLLKD--GDLYGWVERQAGKYQAKIDRQQTMKLVERVGAELRLLDKEIEK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IT+ ++ + T + +I G++ A+ + + + L Sbjct: 193 MALFVGVGESITDDAIELLGARTLEQDVFGLIEQVASGRLDKALRMMYDCMKTGEEPIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++F++L +H+ + ++ + K + ++++ R +++ +++ L Sbjct: 253 LALLARQFRML--LHVKQLAPRGYSQQQVAGMIKMHPYAVKKAMEQA-RHFSEESLKKLL 309 Query: 311 HKIDH 315 + Sbjct: 310 GILAE 314 >gi|21243506|ref|NP_643088.1| DNA polymerase III subunit delta [Xanthomonas axonopodis pv. citri str. 306] gi|21109067|gb|AAM37624.1| DNA polymerase III delta subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 342 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K AE + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVISRFCANPPPDVVLLITANDWSKAHH-GKWAEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + + T G+ I + AL+ +++ Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRGEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPH 297 >gi|262165196|ref|ZP_06032933.1| DNA polymerase III delta subunit [Vibrio mimicus VM223] gi|262024912|gb|EEY43580.1| DNA polymerase III delta subunit [Vibrio mimicus VM223] Length = 342 Score = 92.7 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E +K F + + + S+ ++ + SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + I+++ ++ K + + Sbjct: 74 SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I+C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWINCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSKALFRLVGILTKAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|114561886|ref|YP_749399.1| DNA polymerase III, delta subunit [Shewanella frigidimarina NCIMB 400] gi|114333179|gb|ABI70561.1| DNA polymerase III, delta subunit [Shewanella frigidimarina NCIMB 400] Length = 344 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 102/290 (35%), Gaps = 10/290 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ +G D LI E Q N + F V + E N E + SLF+ + Sbjct: 19 FLLFGDDPWLI-ENSKQLILNAAKKQG--FEERVQLSQETGFNWGDLVQEWQAMSLFASR 75 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + + + ++ + ++II+ + T K + + + Sbjct: 76 RIIELTLPQGKPGMEGAAAFQTLLQHPNPDMLLIIQGPKASAEQTNSKWFKSLDAKGIYL 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++ + + ++ +AK +L G+ +A+ +Q L Sbjct: 136 PCTTPEGKQFERWLDSRISHYELTVHHDAKAMLFTLFEGNLLAAEQAMQLLQLLS-PKQN 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT + + + D + ++ +A + +A + A L+ ++ L Sbjct: 195 ITPEQLSEYFEDQSRFSVFQLCDAILGNHQKHAQHMLAQLQAEGTAMPILMWALFKEINL 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + + + K+ + I ++ + Q ++ + + + L Sbjct: 255 LLTLKLAVH-NGEQLSKLWSQHR--IWDKRKPLYQAAITRLDLDHIEHML 301 >gi|294666090|ref|ZP_06731349.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604149|gb|EFF47541.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 342 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K AE + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVISRFCANPPPDVVLLITANDWSKAHH-GKWAEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + + T G+ I + AL+ +++ Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRGEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPH 297 >gi|318042954|ref|ZP_07974910.1| DNA polymerase III subunit delta [Synechococcus sp. CB0101] Length = 325 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 41/330 (12%), Positives = 111/330 (33%), Gaps = 21/330 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D+ ++ + + +L L+ + + E + Sbjct: 2 PIHLLWGDDEAARTRAVDTLIREHTDPAWQSINLARLDGNDTSQATQAL-EEARTPPFGG 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLR-------- 128 ++++++ ++ + LE + N ++++ S K + LR Sbjct: 61 GDRVVVLQRSPFCNQCPAELAEQLEASLALIPDNCHLLLVNSG--KPDGRLRTTKALQKL 118 Query: 129 -KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K E + D + L++ + + A + L +G D +E Sbjct: 119 VKAGEAKEQSFQLPAVWDGAGQVE-LVQRTARELGLQLEPAAAEALSEAIGSDSARLASE 177 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL+ Y IT V+ ++ ++ + +A + GK A+ L D L + P+ Sbjct: 178 LEKLALYVGAQ-AITTAAVEALVGSHATNALQ-VGDALLAGKPAEAVALVDALLEANEPA 235 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 ++ + + + ++ + I + P + ++++ +R Sbjct: 236 LRIVATLCGQIRGWLWVSLLDQQGESDVNAIAKAAGIG-NPKRIYVMRKQIRGRQPARFL 294 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 L ++ ++ +L Sbjct: 295 ALLRQLLEVEAALKRGSDPGDAFRDGFLLT 324 >gi|295134905|ref|YP_003585581.1| DNA polymerase III subunit delta [Zunongwangia profunda SM-A87] gi|294982920|gb|ADF53385.1| DNA polymerase III subunit delta [Zunongwangia profunda SM-A87] Length = 334 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 111/309 (35%), Gaps = 23/309 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + + ++ + + N+ F+ +++ + + + + Sbjct: 18 PIYLLMGEEPYFVDKVADYIEDNVLHEEEKGFNQIIMYGRDTNVD--DIVGNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++++ + +D L + ++++ K + K + K +K +L Sbjct: 76 ERQVVIVKEAQDLARTIDKLSDYAENPQPTTVLVLCYKHKTLDKRKKVYKTIKKSGVIL- 134 Query: 140 ISCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L D I +L IS +A Q+L+ LG D NELQKL Sbjct: 135 ------DSKKLYENQVSDWIVRNLKSRSLGISPKASQMLVEFLGTDLGKIDNELQKLQLV 188 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 C + +T + ++ I + E+ A A + ++F + P + Sbjct: 189 CEKGTDVTPELIEQNIGISKDFNNFELRKAVGLKDEIKAHRIINYFSQNPKDNPLVVTIS 248 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 F L + H + + S ++ K Q + + R + V ++ Sbjct: 249 LLFSYFSQLLQYHGLSDKSKMNVAK--QLKVNPYFVNDYTL---AARNYPMKKVSYAINV 303 Query: 313 IDHRIHLAR 321 + ++ Sbjct: 304 LQEADVKSK 312 >gi|297180233|gb|ADI16453.1| DNA polymerase III, delta subunit [uncultured bacterium HF770_11D24] Length = 374 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 121/374 (32%), Gaps = 47/374 (12%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNIST 69 K + + + +G + L+ E +Q H+ V NA + ++ Sbjct: 4 PKPQLPAEPLCLIFGDEDFLVRERASQVFEGWCAAAGGEDHEIVDGTVRNAAGALEALAK 63 Query: 70 FWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIK----NICNHIIIIK 117 + + F K++ + ++ ++V D L + + ++I Sbjct: 64 LNEAVQTLPFFGGAKVVWLRAANFLGDERTASSREVTDRLNGLAKDWETFDWQGVQVLIS 123 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS--CYPDNKIHLMD--LIEESLLIGQKSISKEAKQIL 173 S +I K + + + A+ D + ++ + L K I+ L Sbjct: 124 SGKIDKR---KAFFKSAKKIAAVEDLSVADKERGSKAALVVGQRLAELGKKITSHVADEL 180 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + G + E KL++Y +T Q V +I T + +A + + Sbjct: 181 VLLAGSNLQQMHTEADKLAAYVGGRDEVTRQDVHEIATRTKQAQAFALADALGERNLPKL 240 Query: 234 IMLADFF-----LASKMPSHALLHGFLQK------FQLLEKIHIIKECSNISFEKIIQKT 282 + + D L +K ALL+G + K + + ++ I+ K + Sbjct: 241 LRVLDEELWVVKLDAKKSPIALLYGLISKVRTMIFLKEMLRLKWIRAGGGYPQFKSQLEA 300 Query: 283 EK-NIIPMKRNILQESL------------RIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329 +P R +++ R +++ + + + + Sbjct: 301 IPDERLPDDRKFNPKAMHPYMLFNALGHARRYSEEELTRAMAILLACNRQLVSSSTDDTL 360 Query: 330 IIFQTILYIAQTAC 343 ++ Q ++ I A Sbjct: 361 LLQQALVQIVSKAA 374 >gi|253995953|ref|YP_003048017.1| DNA polymerase III subunit delta [Methylotenera mobilis JLW8] gi|253982632|gb|ACT47490.1| DNA polymerase III, delta subunit [Methylotenera mobilis JLW8] Length = 337 Score = 92.3 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 115/305 (37%), Gaps = 14/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ GS+ E ++ + +I D + +++ E N N S SLFS Sbjct: 18 PIYVLVGSEPLAQRECLDAIRAAANIQGFDERTSLIV---ERNFNWQQIQNFGQSISLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA---EKFTS 136 ++++ + N L+ + K + + +II +++ E Sbjct: 75 SRRLLELNIPNGKPGVDGSKALQALATKALPDTSVIIILPTLEREAKNSAWFAALEAHAQ 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 VL I + +L I L + S++ + L + G+ +A+ E+QKLS Sbjct: 135 VLTI--NEVDAANLPAWIAGRLAQHGQRTSQQTLEFLAHQVEGNLLAANQEVQKLSL-LY 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 +++ V++ + + ++ A + G + + + A+++ + Sbjct: 192 PQGELSDAAVREAVLNVSRYDAFQLGEAVLAGDAERTVRILQGLQDEGENAVAIMNPLMW 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + L +I E + + I ++ +++ +L + + +L K+ Sbjct: 252 VLRPLVRIK-QAEMRGTNLTTAMTNAR--IYGDRQALVKRALSRLSLRQLDASLQKLADI 308 Query: 317 IHLAR 321 +A+ Sbjct: 309 DRMAK 313 >gi|237756119|ref|ZP_04584693.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691723|gb|EEP60757.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 331 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 133/320 (41%), Gaps = 24/320 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I++ + +++ NL V I YG + ++ +FK + + Sbjct: 1 MSEIKASQLLKEF--NLSQLKPVLIIYGDEYLTKTLVVEKFKSVLPVKV--------YWG 50 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIII-----KNICNHI 113 E+ + ++F N + S LFS K I++ + T+ D L++II K I Sbjct: 51 DEL--DYASFRNHLFSKDLFSSSKAIVVRDFEAFTDNLKKDELKQIIEDIKNIKLPDRLI 108 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 +++ ++ K K K +V + + ++ L K+IS E + L Sbjct: 109 LVVNLEKLDKEP--YKAMLKLDNVDVVISKKLTFQGFLTSLKNKLAKEGKAISDENLKYL 166 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + L D ++NE++KL Y + IT++ + ++ + ++ + I +A Sbjct: 167 ASLLNNDLTIAKNEVEKLLLYVGDKKEITKEDIDAVVTPVFEENVFNFLDKFFKKDI-SA 225 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + L + + + L + + + I+ E N S E+ + K+ N P+++ Sbjct: 226 LKIFINLLDNGVHPFEIQSLILSQLEKALQTKILIEAGN-SLEEALDKSGIN-HPLQKAN 283 Query: 294 LQESLRIWNKNLVRETLHKI 313 + L+ +K + + L + Sbjct: 284 ISNILKNLSKEEMVKLLSNL 303 >gi|237747341|ref|ZP_04577821.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] gi|229378692|gb|EEO28783.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] Length = 338 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 120/327 (36%), Gaps = 15/327 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G + L+ E + +K + F + +E N+ SLF Sbjct: 19 LYVLTGDEHLLLLEAADMIRKAARDRH---FGEREILTVERGFKWGQLHAANNAMSLFGG 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +K+I I K+ L+E + +++ +I ++ + + + Sbjct: 76 RKLIELRIPGGKPGKEGSQTLQEYAAELNPDNVTLITLPKLDWASQKTAWVSALQKNGIY 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I L + I E L ++ +K+ L+ + G+ +A+ E+QKL + Sbjct: 136 IEIPSIELSRLGNWISERLKKQNQTANKQGIDFLVERVEGNLLAAHQEIQKLGL-LYPEG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + + + + + I ++ A + G I + + P +L F ++ + Sbjct: 195 ELGFEQICNSVLNVARYDIFKLNEAMLGGNRARFIRMMEGLKGEGEPLPLILWTFTEEIR 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316 L K E + + + ++Q ++ K ++ L +ID Sbjct: 255 TLLKCKTALESGQTFPATA-KTLR--LRGQREKLIQMAVNRLEKKDLQIALQQTAQIDKI 311 Query: 317 IHLARKKKYLEKN--IIFQTILYIAQT 341 I R +++ + Q L+IA+T Sbjct: 312 IKGLRSDSWMDDAWDALMQLGLFIART 338 >gi|312792993|ref|YP_004025916.1| DNA polymerase III subunit delta [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876461|ref|ZP_07736445.1| DNA polymerase III, delta subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796819|gb|EFR13164.1| DNA polymerase III, delta subunit [Caldicellulosiruptor lactoaceticus 6A] gi|312180133|gb|ADQ40303.1| DNA polymerase III, delta subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 335 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 57/349 (16%), Positives = 138/349 (39%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KSKEIIKELNSQLLKRDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVRF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + ++++ +N ++ + ++ + + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSSLNLSAIIDNLKNFKSDST 115 Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II ++ E K + L++IA L PD L+ ++ + K+IS+ Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAE--LVQPSMPD----LVKWVQNVMSKEGKAISENM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + + K +L L+ F++L + ++E + K + E + Sbjct: 230 LESGYKYLRELYQLKTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + + ++ + K ++ ++ + ++ + + I Sbjct: 287 DK--YKKQAETFTLDKIKAIIQKTIEYEYMIKRGQIDDETALEMLLYQI 333 >gi|308186024|ref|YP_003930155.1| DNA polymerase III, delta subunit [Pantoea vagans C9-1] gi|308056534|gb|ADO08706.1| DNA polymerase III, delta subunit [Pantoea vagans C9-1] Length = 343 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 99/264 (37%), Gaps = 8/264 (3%) Query: 62 EIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + Q + + + S SLF++++ + + + + L ++ + ++I + Sbjct: 56 DAQTDWESLFVSCQSLSLFAQRQTMTLQFPENAPNAAMAEQLVKLSQLLHADILLICRMP 115 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ K + S + + C + L + + S+ A Q+L Sbjct: 116 KLTKAQENSAWFKALSASAVLVPCQTPEQAQLPRWVVNRAKALKLSVDDAAVQLLCYCYE 175 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A L++LS D +T V++ + D ++A + GK A+ + Sbjct: 176 GNLLALAQALERLSL-QWPDGKLTLPRVEEAVSDAAHFTPFHWVDALLAGKSRRALHILH 234 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + LL + LL +H+ + + ++ + I +R + ++L Sbjct: 235 QLEKEESEVVILLRTLQR--DLLILLHLQRHQAQQPLRTLMDQQR--IWQNRRALFTDAL 290 Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322 + + ++ +H + ++ Sbjct: 291 QRLDATRLQRAIHLLSQIEITLKQ 314 >gi|289663241|ref|ZP_06484822.1| DNA polymerase III subunit delta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 342 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K E + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWTEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAGAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAEITFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|260597065|ref|YP_003209636.1| DNA polymerase III subunit delta [Cronobacter turicensis z3032] gi|260216242|emb|CBA29153.1| DNA polymerase III subunit delta [Cronobacter turicensis z3032] Length = 343 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 107/305 (35%), Gaps = 11/305 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G+D L+ E + + F +++ + ++ + SLF Sbjct: 18 RAAYLVLGNDPLLLQESQDAIHQQAQAQG---FEEHHRFIIDVSTDWQAIFSLCQAMSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ +L+ + + + L ++ + ++I++ N++ K Sbjct: 75 ASRQTLLLALPDNGPNAAINEQLATLVSLLHDDLLLIVRGNKLTKAQENAAWFTALADRA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + I+C + L + + A Q+L G+ +A L++LS Sbjct: 135 VQITCQTPEQAQLPRWVANRAKQMNLQLDDAACQLLCYCYEGNLLALAQALERLSL-IWP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + GK A+ + LL ++ Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILQQLRQEGAEPVILLRTLQRE 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L + ++ + + + + +R ++ E+L + + + + + + Sbjct: 254 LLTLVTLK--RQSATTPLRALFDQHR--VWQNRRALITEALSRLSDDRLWQAVRLLTQCE 309 Query: 318 HLARK 322 ++ Sbjct: 310 ITLKQ 314 >gi|327483679|gb|AEA78086.1| DNA polymerase III delta subunit [Vibrio cholerae LMA3894-4] Length = 342 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 HPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNVVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|213963243|ref|ZP_03391500.1| DNA polymerase III, delta subunit [Capnocytophaga sputigena Capno] gi|213954105|gb|EEB65430.1| DNA polymerase III, delta subunit [Capnocytophaga sputigena Capno] Length = 337 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 109/305 (35%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + + + ++ F +VL ++ + + + S Sbjct: 18 PIYFLMGEEPYFIDIVSDYIEDHVLQEDQKGFDQIVLYGQDVT--VPAIIDYARRFPMMS 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++I+++ + +D L + +++ K ++ L K +K + Sbjct: 76 DRQVIIVKEAQNLRATIDQLVPYVENPTPTTVLVFCYKYEKLDARKKLLKTLQKNKDCVL 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + ++ + + L SI +A Q+L+ LG D +NE+ KL+ E+ Sbjct: 136 LESKKLYENQVVAWLPDVLKKKHLSIQPKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 +T + ++ I + E+ +A Y + F + P L Sbjct: 196 EVTPEIIEKNIGISKEFNNFELKSAIAANDAYKIARILKHFADNPKDNPLVMTLTVLYGY 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 FQ L H + + ++ + ++ + + +++ + ++ I Sbjct: 256 FQQLLAFHGLTDQTDKN---VMATLKVPVF---------AIKDLRSGAQHYPMKRVSAII 303 Query: 318 HLARK 322 R+ Sbjct: 304 ATLRQ 308 >gi|329905567|ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327547564|gb|EGF32367.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 105/312 (33%), Gaps = 24/312 (7%) Query: 37 LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTE 94 + + F L A ++ SLF +K+I + Sbjct: 15 RAQGLSERDVLQVDRSFKWGELTAANNEQ------------SLFGDRKLIELRLPTGKPG 62 Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDL 153 K+ L++ +++ +I ++ S + I + L Sbjct: 63 KEGGQALQQYAASPNPDNVTLITLPKLDWATAKAAWVGTLQQSAVYIEIPLIERNQLPGW 122 Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 I L +S ++A + + G+ +A+ E+QKL D ++ + V D + + Sbjct: 123 ISTRLAAQGQSAERDALNFMAERVEGNLLAAHQEIQKLGL-LHGDGQLSFEQVHDAVLNV 181 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + ++ A + G + + + D +L ++ + L KI E Sbjct: 182 ARYDVFKLNEAMLAGDVARLVRMLDGLQGEGEALPLVLWAVAEEIRTLLKIKTAME-QGQ 240 Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLARKKKYLEKN- 329 +++++ I + +++ +LR + + + K +D + R Sbjct: 241 PVGQLLKQYR--IWGPREKLMEPALRRLSMATLEAAIQKAAQLDRLVKGLRAPALAGDAW 298 Query: 330 -IIFQTILYIAQ 340 + Q L +A+ Sbjct: 299 DAMRQLALGVAR 310 >gi|282898920|ref|ZP_06306904.1| DNA polymerase III, delta subunit [Cylindrospermopsis raciborskii CS-505] gi|281196231|gb|EFA71144.1| DNA polymerase III, delta subunit [Cylindrospermopsis raciborskii CS-505] Length = 341 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/337 (14%), Positives = 125/337 (37%), Gaps = 17/337 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I++G D I + + + I F+ + I N++ + S + Sbjct: 2 PIYIYWGEDDFAIEKAVTLLRDRILDPLWTSFNYTTFLPDQGDSVIQAL-NQVMTPSFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133 +++ + N + + + L+ + + +++ S K+ L K Sbjct: 61 GGRLVWLINSNLCQNCPENIFSELKRTLPVIPESSFLLVTSPNKPDERLKSTKLLKQFAD 120 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 F I + L+ + ++ ++ + + L ++G D E++KL Sbjct: 121 FREFSLIPPWKTEL--LVQAVNQAAQDIGIKLTPQVAETLAESIGNDSRLLYTEIEKLRL 178 Query: 194 Y-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y +I +T V ++ +T ++ + A G A+ + + + P ++ Sbjct: 179 YLASSNIPLTSTIVTQLVRNTTHNTLQ-LAAAIKAGDSAKALGILADLIGAAEPGLRIVA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+ + ++ E + + I Q E + P + LQ+ ++ + + +L Sbjct: 238 TLTGQFRTWLWVKMMMESGERNPQAIAQGAEVS-NPKRIYFLQQEVKSLSVEQLVFSLPL 296 Query: 313 IDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNNNF 348 + K+ + + QT ++ + Q K+ F Sbjct: 297 MLE--LEVSLKQGASEILTLQTKVIELCQLYQKSGTF 331 >gi|282897013|ref|ZP_06305015.1| DNA polymerase III, delta subunit [Raphidiopsis brookii D9] gi|281197665|gb|EFA72559.1| DNA polymerase III, delta subunit [Raphidiopsis brookii D9] Length = 341 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 123/336 (36%), Gaps = 15/336 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I++G D I + + + I F+ + I N++ + S + Sbjct: 2 PIYIYWGEDDFAIEKAVTLLRDRILDPLWTSFNYTTFLPDQGDSVIQAL-NQVMTPSFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133 +++ + N + + + L+ + + +++ S K+ L K Sbjct: 61 GGRLVWLINSNLCQNCPENIFSELKRTLPVIPESSFLLVTSPNKPDERLKSTKLLKQFAD 120 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 F I + L+ + ++ + + + L ++G D E++KL Sbjct: 121 FREFSLIPPWKTEL--LVQAVNQAAQDVGIKLKPQVAETLAESIGNDSRLLHTEMEKLRL 178 Query: 194 Y-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y + + V ++ +T ++ + A G A+ + + + P ++ Sbjct: 179 YLASSNHPLNSAIVTQLVRNTTQNTLQ-LAAAIKIGDSAEALGILGDLIGAAEPGLRIVA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+ + ++ E + + I Q E + P + LQ+ ++ + + +L Sbjct: 238 TLTGQFRTWLWVKMMMESGERNPQAIAQGAEVS-NPKRTYFLQQEVKSLSVEQLVFSLPI 296 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 + + ++ K+ E + ++ + Q K+ F Sbjct: 297 LLE-LEVSLKQGASEIPTLQTKVIELCQLYQKSGTF 331 >gi|319892644|ref|YP_004149519.1| DNA polymerase III delta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317162340|gb|ADV05883.1| DNA polymerase III delta subunit [Staphylococcus pseudintermedius HKU10-03] Length = 324 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 112/302 (37%), Gaps = 19/302 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + + +G LI Q + D F+ V N E N T E + F Sbjct: 3 NIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYETTLN--TIIEEAMTLPFF 60 Query: 81 SKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129 S KKII+++N + EK D L E I K +II +++ ++ + + K Sbjct: 61 SDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASLIIFQVQAVKLDERKKVVK 120 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K ++ I + + I + L K I ++A + L+ G + EL Sbjct: 121 ALKKVANIKKIE--QMTEQEMQKWIHQYLNQSYKEIKQDALEALIQLTGIHYRMIKQELD 178 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL + + I ++ V+ I+ + + + + +G+ AI L + K Sbjct: 179 KLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKAQAISLVKDLIQLKEEPIK 238 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 LL + L I S ++I + + P + + R ++ + + Sbjct: 239 LLALITSNY-RLYYQSKILNQKGYSGQQIAKTVG--VHPYRVKLALNQARKYDLDTLLTI 295 Query: 310 LH 311 + Sbjct: 296 MD 297 >gi|217969621|ref|YP_002354855.1| DNA polymerase III subunit delta [Thauera sp. MZ1T] gi|217506948|gb|ACK53959.1| DNA polymerase III, delta subunit [Thauera sp. MZ1T] Length = 336 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 46/328 (14%), Positives = 115/328 (35%), Gaps = 13/328 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G++ L+ E + + ++ +V+ + SLF Sbjct: 18 PLWLLHGNEPLLVLEAADAIRAAARRQGYEERETLVVGHGF---KWDALALAAGNLSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+I I + D L+ I + ++ E+ + + Sbjct: 75 GAKLIDLRIPTGKPGRDGGDALQRYIAHLPSQTLTLVTLPEVDWATRKTAWFKGLADAAT 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + + L + + L ++S EA + ++ G+ +A+ E+ KL + Sbjct: 135 TLELHAPERERLPEWVARRLAAQKQSAPPEALAFIADHVEGNLLAAHQEILKLGL-LHGE 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T + V+D + D I+++ A ++G L + +L + Sbjct: 194 GALTLEQVQDAVLDVARYDIDKLRLAVVEGDPARCARLLEGLEGEGAAPPLVLWALAHET 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L + ++ + K E+ P ++ + +L + +R + H Sbjct: 254 RSLATLSAGRDAG--QPLAALFKAERIFDPRRQQAMTRALGRLGQGHLRAA---LMHAAR 308 Query: 319 LARKKKYLEKNIIFQTILYIA-QTACKN 345 + R K L ++ L +A + A + Sbjct: 309 IDRMIKGLASGDLWDEFLQLALRLARRG 336 >gi|310829060|ref|YP_003961417.1| DNA polymerase III [Eubacterium limosum KIST612] gi|308740794|gb|ADO38454.1| DNA polymerase III [Eubacterium limosum KIST612] Length = 337 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 126/317 (39%), Gaps = 26/317 (8%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPF--SLVVLNALEIQKNISTFWNEINSTS 78 V++F G + + N + + T P L + + +IS + + Sbjct: 16 RPVYLFAGPE----QYIGNMVEHTLVETVIAPGLEQLNLAVFEDKNPDISEILSVCETLP 71 Query: 79 LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 L S+K+++++ + +KK ++ L + I + + ++I+ + K + K Sbjct: 72 LMSEKRVVIVRESAGLTKTSDKKTVEALNKYIERPSGSTVLILCDSSPDKRKKVYKTL-- 129 Query: 134 FTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILL------ANLGGDRIASRN 186 AI Y NKI L I L + K S+ + + N + N Sbjct: 130 -KEQGAIVDYDKLNKIDLEKWIGRRLKLAGKRTSQRVVEQFVMDTLYLENDNKNMEMVDN 188 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL K+ Y E IT + ++ ++ + + ++++ + G A+ + + F Sbjct: 189 ELNKIIDYVGERDAITLEDIETVMPKSVEDNVFKMVDYAMGGNKGAALKMLNQFYLEGEG 248 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + L++ +++ + ++ E +S + I ++ + +K+ + ++ R + + Sbjct: 249 PFGVFGLLLRQIRMMLMVKLLSE-KRMSPDTIAKEAKLAPFVVKK--VLQNGRRYRVAGL 305 Query: 307 RETLHKIDHRIHLARKK 323 + T+ I+ + K Sbjct: 306 KRTM--IEAAELDLKMK 320 >gi|313885044|ref|ZP_07818796.1| DNA polymerase III, delta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619735|gb|EFR31172.1| DNA polymerase III, delta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 346 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 133/307 (43%), Gaps = 21/307 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NEINSTSLF 80 V++ YGS++ L + F ++ + L ++Q++ T +E N S F Sbjct: 18 PVYLLYGSEQYL----QDTFLSSLLDHCRQGQEELDLTRFDLQEDSLTLVLDEANLFSFF 73 Query: 81 SKKKIILIENL-----STEKKVLD----CLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129 + +++I+++ ++ K + D L E + + ++I + + + K L K Sbjct: 74 ADRRVIVVDQADSLIGASRKSITDKEQAALLEYLAQPNEASVLIFRVLKDNLDKRRKLSK 133 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K + + ++ P ++ + ++E L G+ I +E Q LL D +EL Sbjct: 134 ALLKEANFVEMT--PMDERAVEAYLKEFLRDGKFKIQREGIQELLIRTNYDLTKVTSELN 191 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+S+ D LIT++ + ++ + + E+ NA + +I A+ + L Sbjct: 192 KLNSFANPDQLITKKDISLLVPRSLESNVFELSNAVVALQIEKAVKIYRDLLLLNNNPIQ 251 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L + +F+L + I+ E ++ I + ++ P + + ++ RI + N +++ Sbjct: 252 LHALLITQFRLFIQSRILMEAGHL-EGDIAKTL--SVHPYRVKLALKNNRILSLNQLQQF 308 Query: 310 LHKIDHR 316 + Sbjct: 309 YMDLVEA 315 >gi|307822485|ref|ZP_07652716.1| DNA polymerase III, delta subunit [Methylobacter tundripaludum SV96] gi|307736089|gb|EFO06935.1| DNA polymerase III, delta subunit [Methylobacter tundripaludum SV96] Length = 337 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 115/304 (37%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + + E+ + + +D ++V ++ S S+F+ Sbjct: 18 PVYFISGDEPLQLGEMADAVRAAARKEGYDSREVLVADSSFSWNE---LTESAGSLSIFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 KKII + + + L + + +++I + ++ + + + V Sbjct: 75 DKKIIDLRLPSGTPGADGSKALIAYCERLPEDTLLLITAAKMAGASLKARWFQALDKVGC 134 Query: 140 I-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLE 197 + +P L+ +++ + E +IL + + G+ +A+ E++KL Y Sbjct: 135 VVQVWPLEGQDLIRWLQQRMQRRGLQAETEGIKILASRIEGNLLAAAQEIEKLYVLY--G 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + ++ Q + D + D+ + +++++ + ++ + A + + +L ++ Sbjct: 193 EGRLSNQQISDAVADSSRFDVFKLMDSVLAARVGRIFKILSGLQAEGVAAPVVLWALTRE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 ++L +I + + + + I ++ ++ ++L + + L Sbjct: 253 ARVLIRIK-QALAQGQNRAVVFKNNQ--IWDKRQQLVSDALNRLGDSDLNSILTLSAKAD 309 Query: 318 HLAR 321 + Sbjct: 310 RQIK 313 >gi|187735313|ref|YP_001877425.1| DNA polymerase III, delta subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425365|gb|ACD04644.1| DNA polymerase III, delta subunit [Akkermansia muciniphila ATCC BAA-835] Length = 387 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 97/257 (37%), Gaps = 27/257 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL-----NALEIQKNISTFWNEINST 77 + + +G+D+G++ E + ++ + FS +L ++ E + + + + Sbjct: 30 IHLVFGTDEGMVREKASGIFAALTEGTN-EFSHEILEAACGDSDEAAQLVRQVMEALRTL 88 Query: 78 SLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIKNIC-NHIIIIKSNEIKKNN 125 F +K++ ++N ST + LD +++ + + +++I ++E K Sbjct: 89 PFFPGRKVVWMKNCNFLGDSVTGRSSTTEAALDSFRQLLESGLGSDVLLLISASEFDKRR 148 Query: 126 TLRKIAEKFTSVLAISCYPDN------KIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + K + + + LM LI + + A ++ + + Sbjct: 149 SFNKFL--LQYAASEELNKPDITKAGWEGSLMPLINKETAARGMNFDSAALELFIHRVSE 206 Query: 180 DRIASRNELQKLSSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 +E++KL Y + + + V+ ++ T I EI A K AI L D Sbjct: 207 SSRQIISEIEKLDLYLGADRRTVMPEDVERMVPLTRTGVIFEISRALENKKSDAAISLID 266 Query: 239 FFLASKMPSHALLHGFL 255 F L + ++ Sbjct: 267 FQLERGENAITIMRAAF 283 >gi|126660134|ref|ZP_01731253.1| hypothetical protein CY0110_20495 [Cyanothece sp. CCY0110] gi|126618577|gb|EAZ89327.1| hypothetical protein CY0110_20495 [Cyanothece sp. CCY0110] Length = 326 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 18/311 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS- 81 ++ F+G D+ I + + + I F+ + + I + +F Sbjct: 3 IYFFWGEDEFAIAQTVQTLRDTILDPNWIQFNYHQIPGEDPNSTIEALNQAMT--PVFGI 60 Query: 82 KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 +++ + N S ++ +L L+ I+ N ++ +N+ +K + +++ AE Sbjct: 61 GGRLVWVVNTSIGQQCSEEILTQLQRILPAIPDNSHLLFTTNKKPDKRLKSSKLIQQYAE 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 I + ++ L+ +++ ++ +A ++L ++G + NEL+KL Sbjct: 121 VREYS-PIPPWKTDE--LIHKVKQVSQEIGVKLTPKAIELLAESVGNNSRQLWNELEKLK 177 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y ++ ++ V + + + ++ A QG A+ L D L+ P+ ++ Sbjct: 178 LYGQQENKPLDETVIATLVNANAQNSLQLAQAIRQGNQAEALQLIDELLSRNEPALRIVA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + +F+ I + E + + I + + P + L++ L+ + + TL Sbjct: 238 TLVGQFRTWTIIQLQLEAGEMDNKIIAKAADIP-NPNRLYFLRKELQKMSGKQLLATLPI 296 Query: 313 IDHRIHLARKK 323 + R K Sbjct: 297 LLD--LETRLK 305 >gi|94311903|ref|YP_585113.1| DNA polymerase III subunit delta [Cupriavidus metallidurans CH34] gi|93355755|gb|ABF09844.1| DNA polymerase III, delta subunit [Cupriavidus metallidurans CH34] Length = 356 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/315 (13%), Positives = 115/315 (36%), Gaps = 18/315 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E +++ ++ FS + E S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDRLRRAAREAG---FSERDVLVAERGFQWGQVIEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +KI+ I + K + L + + + ++++ + T + S + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVMLVTLPRLDFATTKSAWFQALESAGV 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSS 193 +I ++ L + E L + Q+ + A Q + + G+ +A+ E+QKL Sbjct: 139 SIKVDAVDRTRLPAWVGERLGLQQQRVEPGEPGRRALQFIAEKVEGNLLAAHQEIQKLGL 198 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +T V+D + + + ++ A + G + + + + + +L Sbjct: 199 -LYPPGALTFDQVQDAVLNVARYDVFKLSEAMLGGDVPRLVRMLEGLRGEGEATVLVLWA 257 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++ ++L K+ ++++ + + ++ ++ + + + + Sbjct: 258 LTEEIRVLSKVR-QGLAGGKPAGVLMRELR--VWGPRERLVPQAAQRLSMPQLEAA---L 311 Query: 314 DHRIHLARKKKYLEK 328 L R+ K L Sbjct: 312 AMAARLDRQVKGLSD 326 >gi|15640969|ref|NP_230600.1| DNA polymerase III subunit delta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591020|ref|ZP_01678337.1| DNA polymerase III, delta subunit [Vibrio cholerae 2740-80] gi|153820343|ref|ZP_01973010.1| DNA polymerase III, delta subunit [Vibrio cholerae NCTC 8457] gi|153823315|ref|ZP_01975982.1| DNA polymerase III, delta subunit [Vibrio cholerae B33] gi|153826106|ref|ZP_01978773.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-2] gi|153830933|ref|ZP_01983600.1| DNA polymerase III, delta subunit [Vibrio cholerae 623-39] gi|183179691|ref|ZP_02957902.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-3] gi|227081127|ref|YP_002809678.1| DNA polymerase III, delta subunit [Vibrio cholerae M66-2] gi|229505446|ref|ZP_04394956.1| DNA polymerase III delta subunit [Vibrio cholerae BX 330286] gi|229510884|ref|ZP_04400363.1| DNA polymerase III delta subunit [Vibrio cholerae B33] gi|229518005|ref|ZP_04407449.1| DNA polymerase III delta subunit [Vibrio cholerae RC9] gi|229608465|ref|YP_002879113.1| DNA polymerase III subunit delta [Vibrio cholerae MJ-1236] gi|254848085|ref|ZP_05237435.1| DNA polymerase III [Vibrio cholerae MO10] gi|255744737|ref|ZP_05418688.1| DNA polymerase III delta subunit [Vibrio cholera CIRS 101] gi|262161129|ref|ZP_06030240.1| DNA polymerase III delta subunit [Vibrio cholerae INDRE 91/1] gi|262190525|ref|ZP_06048769.1| DNA polymerase III delta subunit [Vibrio cholerae CT 5369-93] gi|298498930|ref|ZP_07008737.1| DNA polymerase III, delta subunit [Vibrio cholerae MAK 757] gi|9655412|gb|AAF94115.1| DNA polymerase III, delta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547130|gb|EAX57262.1| DNA polymerase III, delta subunit [Vibrio cholerae 2740-80] gi|126509113|gb|EAZ71707.1| DNA polymerase III, delta subunit [Vibrio cholerae NCTC 8457] gi|126519179|gb|EAZ76402.1| DNA polymerase III, delta subunit [Vibrio cholerae B33] gi|148873588|gb|EDL71723.1| DNA polymerase III, delta subunit [Vibrio cholerae 623-39] gi|149740129|gb|EDM54288.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-2] gi|183013102|gb|EDT88402.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-3] gi|227009015|gb|ACP05227.1| DNA polymerase III, delta subunit [Vibrio cholerae M66-2] gi|229344720|gb|EEO09694.1| DNA polymerase III delta subunit [Vibrio cholerae RC9] gi|229350849|gb|EEO15790.1| DNA polymerase III delta subunit [Vibrio cholerae B33] gi|229357669|gb|EEO22586.1| DNA polymerase III delta subunit [Vibrio cholerae BX 330286] gi|229371120|gb|ACQ61543.1| DNA polymerase III delta subunit [Vibrio cholerae MJ-1236] gi|254843790|gb|EET22204.1| DNA polymerase III [Vibrio cholerae MO10] gi|255737768|gb|EET93162.1| DNA polymerase III delta subunit [Vibrio cholera CIRS 101] gi|262028879|gb|EEY47532.1| DNA polymerase III delta subunit [Vibrio cholerae INDRE 91/1] gi|262033598|gb|EEY52092.1| DNA polymerase III delta subunit [Vibrio cholerae CT 5369-93] gi|297543263|gb|EFH79313.1| DNA polymerase III, delta subunit [Vibrio cholerae MAK 757] Length = 342 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|328472492|gb|EGF43355.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus 10329] Length = 339 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 116/303 (38%), Gaps = 13/303 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 +++I +E + L+ + + +++I ++ K K K + Sbjct: 76 RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNTKGD 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +SC + L ++ +++ Q+L G+ A L+KL+ D Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + I+A + GK A + A + + L+ ++F Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 L +H ++ + +S ++ +K + KR + +L + + + + + Sbjct: 254 NQLLSMH--QDLTQMSISQVFEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEI 309 Query: 319 LAR 321 A+ Sbjct: 310 KAK 312 >gi|153213837|ref|ZP_01949043.1| DNA polymerase III, delta subunit [Vibrio cholerae 1587] gi|124115671|gb|EAY34491.1| DNA polymerase III, delta subunit [Vibrio cholerae 1587] Length = 342 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++ +G++ L+ E +K F + + + S ++ + SLF Sbjct: 17 HPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWSAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|254285624|ref|ZP_04960588.1| DNA polymerase III, delta subunit [Vibrio cholerae AM-19226] gi|150424486|gb|EDN16423.1| DNA polymerase III, delta subunit [Vibrio cholerae AM-19226] Length = 342 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 110/304 (36%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLSSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|119899506|ref|YP_934719.1| DNA polymerase III subunit delta [Azoarcus sp. BH72] gi|119671919|emb|CAL95833.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 336 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 106/326 (32%), Gaps = 11/326 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G++ L+ E + + + +V+ + + SLF Sbjct: 18 PLWVLHGNEPLLVLEAADAIRAAARRQGYSERETLVVGQGFRWD---SLTLAAGNMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+I I + D L+ + + + ++ E+ + Sbjct: 75 GAKLIDLRIPTGKPGRDGGDALQRYVAQLPAATLTLVTLPELDWQARKTSWFKALGDAGT 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I + L + + L + EA + ++ G+ +A+ E+ KL Sbjct: 135 VIELNAPERERLPQWLAQRLAAQHLTAPAEALAFIADHVEGNLLAAHQEILKLGLLFPHG 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + + I+ + A ++G L + +L + Sbjct: 195 AQLTLDDVQQAVLNVARYDIDTLRQAVLEGDPARCARLLEGLHGEGAAPPLVLWALANET 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L + ++ + K E+ ++ +L +L +R + H Sbjct: 255 RSLALLRAGQDAG--QPLAALFKAERVFDERRKQLLTRALARLGGGRLRAA---LMHAAR 309 Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344 + R K L ++ L +A C+ Sbjct: 310 IDRMIKGLADGDVWDEFLQLALRLCR 335 >gi|186477334|ref|YP_001858804.1| DNA polymerase III subunit delta [Burkholderia phymatum STM815] gi|184193793|gb|ACC71758.1| DNA polymerase III, delta subunit [Burkholderia phymatum STM815] Length = 375 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 45/342 (13%), Positives = 116/342 (33%), Gaps = 31/342 (9%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++I YG + L E I + T F++ + S+ S SL Sbjct: 19 LYIVYGDEHLLAQEACDRIRAAARAGGFTDRTVFTVER------GFDWSSLLGASQSMSL 72 Query: 80 FSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 F ++++ I + K+ D L+ + + + ++ + + Sbjct: 73 FGDRQLVELRIPSGKPGKEGADALKTLAAAANPDVLTLVTLPRLDAATQKAAWFTALADA 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKL 191 +A+ P + L I + L + ++ A Q + + G+ +A+ E+QKL Sbjct: 133 GVALKIDPVERAQLPGWISQRLASQNQRVAPGEDGKRALQFIAERVEGNLLAAHQEIQKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 ++T + V D + + + ++ A + G + + D + +L Sbjct: 193 GL-LYPSGVLTFEQVHDAVLNVARYDVFKLNEAMLAGDVGRLSRMIDGLKGEGEAAVLVL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 +++ + L +I + ++++ + + ++ +L + + L Sbjct: 252 WAVVEEIRTLLRIKRGVDA-GKPLAMLLRENR--VWGPRERLVGPALSRVTEAALERALS 308 Query: 312 ---KIDHRIHLA-------RKKKYLEKNIIFQTILYIAQTAC 343 ++D ++ R+ L + A Sbjct: 309 LAARLDRQVKGLSGGTPGDRRNDPPPDPWAGLFELALTVAAA 350 >gi|227509439|ref|ZP_03939488.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191151|gb|EEI71218.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 342 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 42/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++ HK V++ G L +Q K+ + D + + Sbjct: 7 MTQLKQHKQDA-----------VYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51 Query: 61 LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110 ++++ + E S F ++++++I S + +D E + Sbjct: 52 YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111 Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + I++I + ++ + K +K + + I +++ + +++ + +I ++ Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYTIDED 169 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A + ++ G + N+L KL Y + IT V ++ + + +++N+ ++ Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 ++ + + + +Q+F+LL ++ +I + S + + + P Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + + +++R ++ +R+ + + Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322 >gi|325570543|ref|ZP_08146269.1| DNA-directed DNA polymerase III delta subunit [Enterococcus casseliflavus ATCC 12755] gi|325156389|gb|EGC68569.1| DNA-directed DNA polymerase III delta subunit [Enterococcus casseliflavus ATCC 12755] Length = 345 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 123/297 (41%), Gaps = 21/297 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 +++ GS+ L ++ F + S+ D + + +++K+ E S F Sbjct: 24 IYLVIGSEMFLQEQVRTAFLERFSVGKDD----LNFASFDMEKDPLDMVIQEAQSLPFFG 79 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++ +E L+ EKK LD I + + +I+I ++ ++ + + K Sbjct: 80 DQRLLFVERPFFLTAEKKSNAPEHDLDDFLNYIKDPLESSVIVIFADVDKLDERKKITKQ 139 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K V+ ++ + + +++SL +S+EA + L + ELQK Sbjct: 140 LKKAAVVIDVAPMKE--ADVRQYLQQSLANDGIEMSREAFDLFLRLTDLQLSKAMQELQK 197 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y IT++ V +I T + E+ + ++G + +A+ L D L + + Sbjct: 198 LRLYAGNGNKITKEIVLQLIPKTLEHNVFELTSDVLKGNVSDALRLYDDLLLQGEETIKI 257 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + + +LL + I+ + +++ I P + + + R + + + Sbjct: 258 NAILISQVRLLLQAAILMKIG---YQQANIAETLGIHPYRVKLAMQQARGFGEKQLA 311 >gi|161831366|ref|YP_001596487.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 331] gi|161763233|gb|ABX78875.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 331] Length = 339 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 16/310 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N +++ G L+ E + ++ F L +E + + + Sbjct: 13 NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCKLLFVETGFHWQSLTQSFD 69 Query: 76 STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + SL S K +I + N ++ L + + + +II +N++ K + Sbjct: 70 NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKA 129 Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 S IS +P + L+ IE+ L E+ +L G+ +A+ ++KL Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251 +D IT + + ++ D I ++ A + G + LA+ + A K +L Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310 ++ +LL + I + E + + + ++ L+ +L N ++ + L Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQLLQ 303 Query: 311 --HKIDHRIH 318 +IDH + Sbjct: 304 QAKRIDHILK 313 >gi|317499482|ref|ZP_07957748.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893256|gb|EFV15472.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 249 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 8/245 (3%) Query: 90 NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 KK D E + + +++ + + K + + K K + D Sbjct: 3 ETGLGKKSDDTFIEGLKEASDTSVVLFIEDSVDKRSKIYKFLSKEGHAVCFESAGD--KE 60 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L + L K +S + L G D +NEL+KL SY E IT + ++++ Sbjct: 61 LSRWLASLLKKEGKQMSSATMRSFLYRCGSDMYTLKNELEKLISYVGEREEITIRDLEEL 120 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 I ++ A + + + L + K +L +++ L ++ + Sbjct: 121 TSSQTTNQIFVMLEAIARKQREKVLTLYYDLIELKESPFGILALLVRQCNQLLQVK-DLD 179 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYL 326 C S I ++ + + L++ ++++ + +R E K D I + + Sbjct: 180 CLGKSNGMIAKQMKVPAFVAGK--LKDQAKMFSMDTLRDMIEACAKTDESIKTGKISDRV 237 Query: 327 EKNII 331 ++ Sbjct: 238 GVELL 242 >gi|296506455|ref|YP_003667689.1| hypothetical protein BMB171_P0073 [Bacillus thuringiensis BMB171] gi|296327042|gb|ADH09969.1| hypothetical protein BMB171_P0073 [Bacillus thuringiensis BMB171] Length = 331 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 98/254 (38%), Gaps = 10/254 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L+ + + + + + ++V + E + I T NE S F Sbjct: 2 PTYVLYGKETYLLEDKVKGIIQEFTNNTKEDLNVVEFDMEE--ETIQTAINEAEEYSFFG 59 Query: 82 KKKIILIENL-----STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KKI++ N K+V + + K + + ++I+ N+ K + + + E Sbjct: 60 GKKIVITRNANFLTSDNNKEVNHDVNYILSFLEKKMEDSVLILIVNQEKLDQRKKVVKEL 119 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + N+ I + IS E+ Q L+ ++G + +NE+ KL + Sbjct: 120 KKKAIIFEAKTLNQAETATWILKYANNKNIQISNESVQELIVSVGCNLRCLKNEVDKLYA 179 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y IT + + + I + + AI L + + K +L Sbjct: 180 YSNGGKEITMDAIAAVTVKSLEQSIFNLSEYLLSQDTNKAIELFNELILKKHNPIQILAT 239 Query: 254 FLQKFQLLEKIHII 267 + KF +L KI ++ Sbjct: 240 LIYKFDMLFKIKVL 253 >gi|229086894|ref|ZP_04219053.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-44] gi|228696404|gb|EEL49230.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-44] Length = 336 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLIYGTEAYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEEVIEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + KI+LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ECKILLIKSPLFLTSQKEKLEQNIKILEEYIAEPSPFTIVVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + + I + A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANEMQVQDVRKWVVARAEEVHVHIEEMAINLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEVTTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLNQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|156973529|ref|YP_001444436.1| DNA polymerase III subunit delta [Vibrio harveyi ATCC BAA-1116] gi|156525123|gb|ABU70209.1| hypothetical protein VIBHAR_01220 [Vibrio harveyi ATCC BAA-1116] Length = 339 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 114/306 (37%), Gaps = 19/306 (6%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 V++ +G++ LI E I + F++ + + + ++ + +L Sbjct: 19 VYLIFGNEPLLIQESRQAIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALNL 72 Query: 80 FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 FS +++I +E + L + + ++++ +++ K K K S Sbjct: 73 FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWF-KALSA 131 Query: 138 LA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 +SC + L ++ +++ Q+L G+ A L+KL+ Sbjct: 132 KGDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-L 190 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D +T +++ + + I+A + GK A + A + + L+ Sbjct: 191 YPDGELTVVRLEEALSRHNHFTTFHWIDALLAGKANRAQRILRQLEAEGIETIILIRSVQ 250 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++F L +H ++ + ++ +K + KR +L + + + L + H Sbjct: 251 KEFNQLLNMH--RDLIQMGMSQVFEKHR--VWQNKRPFYNAALTRLSASRICALLSLLAH 306 Query: 316 RIHLAR 321 A+ Sbjct: 307 AEIKAK 312 >gi|29653896|ref|NP_819588.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 493] gi|154707041|ref|YP_001424852.1| DNA polymerase III, delta subunit [Coxiella burnetii Dugway 5J108-111] gi|29541159|gb|AAO90102.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 493] gi|154356327|gb|ABS77789.1| DNA polymerase III, delta subunit [Coxiella burnetii Dugway 5J108-111] Length = 339 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 16/310 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N +++ G L+ E + ++ F L +E + + + Sbjct: 13 NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69 Query: 76 STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + SL S K +I + N ++ L + + + +II +N++ K + Sbjct: 70 NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKA 129 Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 S IS +P + L+ IE+ L E+ +L G+ +A+ ++KL Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251 +D IT + + ++ D I ++ A + G + LA+ + A K +L Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310 ++ +LL + I + E + + + ++ L+ +L N ++ + L Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQLLQ 303 Query: 311 --HKIDHRIH 318 +IDH + Sbjct: 304 QAKRIDHILK 313 >gi|262172036|ref|ZP_06039714.1| DNA polymerase III delta subunit [Vibrio mimicus MB-451] gi|261893112|gb|EEY39098.1| DNA polymerase III delta subunit [Vibrio mimicus MB-451] Length = 342 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 108/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E +K F + + + S+ ++ S SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQSLSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + I+++ ++ K + + Sbjct: 74 SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K + + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQEGQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSKALFRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|269926062|ref|YP_003322685.1| DNA polymerase III, delta subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789722|gb|ACZ41863.1| DNA polymerase III, delta subunit [Thermobaculum terrenum ATCC BAA-798] Length = 331 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 43/350 (12%), Positives = 112/350 (32%), Gaps = 47/350 (13%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V G+D + E + + +V L A + I + N+ LF Sbjct: 2 VVTICGNDHTKLNERLRAILSELEEDTD----VVELEATGLS--IRDLRDYCNTMPLFGG 55 Query: 83 KKIILIEN----------------------LSTEKKVLDCLEEIIIKNICNHIIIIK--- 117 K++++++ ++ +++ LE+ + + +++ Sbjct: 56 KRVVIVKGISSLSSSDASSSTDQEYSERKTRTSSSQLVKDLEDYLPEVPETTLLVFFDRN 115 Query: 118 -SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 LRK + +L + L I ++ I E+ +IL Sbjct: 116 PIGTSGIGRVLRKYSSFEEYLLP------EQAELPLYIRKAFESDGYKIDSESAEILAQA 169 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + D ++E+ KL YC + + I + + ++ + + +I +A A+ Sbjct: 170 VSNDVSRLQSEMDKLKMYCKDKLRIDPEDIYLLVDMPPDVAVWDITDAIYSKNAGKAVQS 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 L + ++ + + L ++ ++ ++ + ++ L Sbjct: 230 FRALLEKGVAPQQIIGAISSQIRNLVIADSCRDKGSLYLQQA-TGMKP--FVARK--LST 284 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 +L + ++ L + + K + + Q AC Sbjct: 285 ALSTFKPGQPKKLLEMLLQVDLSYKT----GKAELDSALELFIQQACARR 330 >gi|302039504|ref|YP_003799826.1| putative DNA polymerase III subunit delta [Candidatus Nitrospira defluvii] gi|300607568|emb|CBK43901.1| putative DNA polymerase III, delta subunit [Candidatus Nitrospira defluvii] Length = 364 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 81/244 (33%), Gaps = 9/244 (3%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL---IENLSTE 94 + F+ + + + + + +F+++++++ +E L Sbjct: 33 AALRAAALGPAADTGFNCDIFHGDDCS--VEDVLACASEIPVFAERRVVVYKSVEKLPAR 90 Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + + L +I+ + ++ + + ++C P L I Sbjct: 91 EG--EKLLSYFAAPNDTTTLIVVAAKLDGRMKWTQAL--TKGGVTVNCAPLRDAQLSAWI 146 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + I +EA Q+L A + EL+KL++Y D V+ + Sbjct: 147 RQEAAALGVRIHEEATQLLKEVGSESLYAVKRELEKLAAYVPPDRTAQLADVEALRGTES 206 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274 + +++NA A+ + L + +L + +++ L K+ + Sbjct: 207 GASVFDLMNAIGAHDHGRALRILARNLENGEAPLRILGALVWQYRRLWKMKEQLKSGGRE 266 Query: 275 FEKI 278 E Sbjct: 267 GEAA 270 >gi|238795404|ref|ZP_04638919.1| DNA polymerase III subunit delta [Yersinia mollaretii ATCC 43969] gi|238720523|gb|EEQ12324.1| DNA polymerase III subunit delta [Yersinia mollaretii ATCC 43969] Length = 304 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 100/266 (37%), Gaps = 10/266 (3%) Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + ++ + SLF+ ++ +L+ + + + L ++ + ++I+++N++ K Sbjct: 22 DSIFSLCQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 81 Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + + +SC + L + + A Q+L G+ +A Sbjct: 82 ENSPWFKALSKNGVFVSCQTPEQAQLPRWVSTRAKSLSLDVDDAAIQLLCYCYEGNLLAL 141 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L++LS D +T V+ + D ++A + GK A + Sbjct: 142 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 200 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 LL ++ L + + + + + + + +R ++ ++L+ + Sbjct: 201 SEPIILLRTLQRELLQLLTLKRRMD--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMQ 256 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330 + + +H + R K+ ++I Sbjct: 257 QLHQAVHLLTQ--MEIRLKQDYGQSI 280 >gi|229512953|ref|ZP_04402419.1| DNA polymerase III delta subunit [Vibrio cholerae TMA 21] gi|229349846|gb|EEO14800.1| DNA polymerase III delta subunit [Vibrio cholerae TMA 21] Length = 342 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTARELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|254496564|ref|ZP_05109432.1| DNA polymerase III, delta subunit [Legionella drancourtii LLAP12] gi|254354188|gb|EET12855.1| DNA polymerase III, delta subunit [Legionella drancourtii LLAP12] Length = 348 Score = 90.4 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 107/289 (37%), Gaps = 10/289 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G D L+ E + K I + ++ + E + + E NS SLFS Sbjct: 18 PLYILVGQDNYLLDESLATIKSAIKKDHDCDERVLTVQTTE---DWNNLREEANSYSLFS 74 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + I + S + L E + I+I++ + + + Sbjct: 75 DRVFLNIFFDKKSIDAAGKKILTEYLGSINSRCFIVIRAPNVPAKQL--QWLTAHEHAVV 132 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 YP N + + I L + ++ ++ G+ +A ++K++ C D Sbjct: 133 SVAYPLNATAMKNWIAIELRKNALNYDQQVPDVIHQYTQGNMLACAQVIEKIALSCAPDS 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+ Q ++ + D + E+I+A +QG+ AI + + K +L Q Sbjct: 193 KISIQQAQEHLSDQCDHNLFELIDACLQGQGDKAIQILRHAASDKTEPTLVLWMLT---Q 249 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 + I + + + I P + + Q S + N N++++ Sbjct: 250 EVRTILQLTNLLQQQIDIKNASAQLKIWPQRIVLYQASCKRLNNNVLQQ 298 >gi|254509290|ref|ZP_05121382.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus 16] gi|219547778|gb|EED24811.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus 16] Length = 337 Score = 90.4 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 114/321 (35%), Gaps = 14/321 (4%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I + + +++ K L H ++ +G++ L+ E +K F A++ Sbjct: 3 IFADRLLEQVNKQL---HPTYLLFGNEPLLLQESRQAIQKAA---LSQGFEERHRFAIDS 56 Query: 64 QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + + ++ + SLFS ++II +E + L + + ++++ ++ Sbjct: 57 SFDWNLVYDCCQAMSLFSARQIIELELPESGVNAAIAKELLALADMLHQDVLLVVIGTKL 116 Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K K + T+ ++C + L ++ EA Q+L G+ Sbjct: 117 TKAQENAKWFKALSTNGFWVNCLTPDVQRLPQFVQARCRALNLKPDPEATQMLAHWHEGN 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A L+KL D + +++ + + I+A + GK A + Sbjct: 177 LFALTQSLEKLVL-LYPDGQLNLIRLEESLSRHNHFTAFHWIDALLAGKANRAQRIMRQL 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + L ++ Q L + + + ++ + I KR + +L Sbjct: 236 EAEGVEMVILARTIQKELQQLLAMLQMMQTE--PIGRVFESYR--IWQSKRPLYSAALTR 291 Query: 301 WNKNLVRETLHKIDHRIHLAR 321 + V+ L + L + Sbjct: 292 LSIANVKTLLQLLAKIEILTK 312 >gi|116333996|ref|YP_795523.1| DNA polymerase III subunit delta [Lactobacillus brevis ATCC 367] gi|116099343|gb|ABJ64492.1| DNA polymerase III, delta subunit [Lactobacillus brevis ATCC 367] Length = 342 Score = 90.4 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 100/250 (40%), Gaps = 16/250 (6%) Query: 71 WNEINSTSLFSKKKIILIEN-----LSTEKKVL----DCLEEIIIKNICNHIIIIKSN-- 119 ++ + F +++++ I+N T+K+ + D L++ + + + +++ + Sbjct: 64 LDDAMAAPFFGERRVVCIDNPQFLTGETKKQKVEHDIDSLQKYLESPMPSTVLVFFAPYD 123 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 ++ + K +K +++ I+ + + + + + L ++ A L+ Sbjct: 124 KLDARKKVTKQLKKVATIVEINQFSE--RDVRQFVTDQLKQDGYTLEPAALNDLIQRTDA 181 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D +EL KL Y L + IT+ + ++ T + +++N + A+ L Sbjct: 182 DLTLIMSELPKLELYTLPEKTITQAAISGLVTQTLTQNVFDLVNRVLAKNTAGAVTLYRE 241 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 L +K + +F+LL + ++ S K+ + + P + + ++ R Sbjct: 242 LLQAKEEPLKINAILQGQFRLLIQTKVLA-KQGYSQGKLASILK--VHPYRIKLALQTHR 298 Query: 300 IWNKNLVRET 309 + + Sbjct: 299 RFQLTDLNRA 308 >gi|57233595|ref|YP_180802.1| DNA polymerase III delta subunit-related protein [Dehalococcoides ethenogenes 195] gi|57224043|gb|AAW39100.1| DNA polymerase III delta subunit-related protein [Dehalococcoides ethenogenes 195] Length = 399 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 123/345 (35%), Gaps = 40/345 (11%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 L + ++IF GSD + E + Q K + + +L + + N + + Sbjct: 55 LLNLLYIFTGSDDFSLKERLKQIKLALGDESLSSANTTMLEGKNLTA--AELQNYVQTIP 112 Query: 79 LFSKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIII------K 117 + +++++ L +K D + + ++ K Sbjct: 113 FLAPARLVMVNGLLERFEGSKGKAAAKDKADKNSPDEFARALSNLPPTTLAVLLDYTTAK 172 Query: 118 SNEIK--------KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 + + +N L K+ V + +L + + +S A Sbjct: 173 DGDYREKEKVSALASNPLFKLVSPGAEVKHFAPLS--AQNLPGWVMQRAKQSSIQMSVPA 230 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 ++L +G D A +E++KL Y + E V++++ + + I +++A + K Sbjct: 231 ARLLARFVGADLWALSSEIEKLGLYAQG-RAVEEADVENMVGYSQEVNIFGLVDAVLDRK 289 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + +A F A LL +++ +L+ + + + + +I + + + Sbjct: 290 VKDAQQSLAAFTAGGGSPGFLLFMLVRQLRLMVR-YTALKKRGLKEAEIFKAMGGSEYAL 348 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331 ++ Q + + N + ++ K+ I R + L ++ Sbjct: 349 RKTASQAACQ--NMDSLKAIYSKLLETDFNIKTGRFEPELAMGLL 391 >gi|229051335|ref|ZP_04194849.1| hypothetical protein bcere0027_52680 [Bacillus cereus AH676] gi|229125360|ref|ZP_04254449.1| hypothetical protein bcere0016_55950 [Bacillus cereus 95/8201] gi|228658089|gb|EEL13840.1| hypothetical protein bcere0016_55950 [Bacillus cereus 95/8201] gi|228722028|gb|EEL73459.1| hypothetical protein bcere0027_52680 [Bacillus cereus AH676] Length = 331 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 10/254 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + L+ + + + + + ++V + E + I T NE S F Sbjct: 2 PTYVLYGKETYLLEDKVKGIIQEFTNNTKEDLNVVEFDMEE--ETIQTAINEAEEYSFFG 59 Query: 82 KKKIILIENL-----STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 KKI++ N K+V + + K + + ++I+ N+ K + + + E Sbjct: 60 GKKIVITRNANFLTSDNNKEVNHDVNYILSFLEKKMKDSVLILIVNQEKLDQRKKVVKEL 119 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + N+ I IS E+ Q L+ ++G D +NE+ KL + Sbjct: 120 KKKAIIFEAKTLNQAETATWILNYANNKNIQISNESVQELIVSVGCDLRCLKNEVDKLYA 179 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y IT + + + I + ++ AI L + + K +L Sbjct: 180 YSNGGKEITMDAIAAVTVKSLEQSIFNLSEYSLSQDTNKAIGLFNELILKKHNPIQILAT 239 Query: 254 FLQKFQLLEKIHII 267 + KF +L KI ++ Sbjct: 240 LIYKFDMLFKIKVL 253 >gi|30249124|ref|NP_841194.1| putative DNA polymerase III (delta subunit) protein [Nitrosomonas europaea ATCC 19718] gi|30138741|emb|CAD85048.1| putative DNA polymerase III (delta subunit) protein [Nitrosomonas europaea ATCC 19718] Length = 356 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 118/302 (39%), Gaps = 12/302 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + L+ E ++ + + + +++ + + + +SLFS Sbjct: 18 PLYVVLGDELLLVMEAVDGIRAYVRGQGYTERTILTADQRF---DWMNLFQWGRQSSLFS 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +++++ I + ++ +E + + + ++ EI K K + Sbjct: 75 ERRMLDLRIPSGKPGREGGVAIETFCRELPRDTVTVVTLPEIDKQGRASKWFKALEQAGQ 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I P + L I++ L + I ++ Q + G+ +A+ E+ KL Sbjct: 135 VIEVKPVGRDRLAHWIKQRLDRQNQMIDQDTLQFFAGKVEGNLLAAHQEIHKLGL-LYPP 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T + VK+ I D + ++ + + + + + +L ++ Sbjct: 194 GRLTFEQVKNAILDVTRFDVLQLPETMLTADMVRYRHILEGLQGEGVAPPLILAILSEQI 253 Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 +LL KIH++K S ++ E+ + I P ++ ++ +++ L+ + L + + Sbjct: 254 RLLIKIHLLKNSSRGMTIEQAMTALR--IWPARQKLMMGAIQRIRYPLLVQAL--LQAAV 309 Query: 318 HL 319 Sbjct: 310 ID 311 >gi|258625421|ref|ZP_05720315.1| DNA polymerase III, delta subunit [Vibrio mimicus VM603] gi|258582332|gb|EEW07187.1| DNA polymerase III, delta subunit [Vibrio mimicus VM603] Length = 342 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E +K F + + + S+ ++ + SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + I+++ ++ K + + Sbjct: 74 SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNFFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSTALFRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|212212951|ref|YP_002303887.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuG_Q212] gi|212011361|gb|ACJ18742.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuG_Q212] Length = 339 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 120/310 (38%), Gaps = 16/310 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N +++ G L+ E + ++ F L +E + + + Sbjct: 13 NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69 Query: 76 STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + SL S K +I + N ++ L + + + +II +N++ K + Sbjct: 70 NFSLLSDKTLIELRNPKAKFDESGTQALLQYLDNPPEDKRLIIITNKLTAAQQKTKWYKA 129 Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 S IS +P + L+ IE+ L E+ +L G+ +A+ ++KL Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251 +D IT + + ++ D I ++ A + G + LA+ + A K +L Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310 ++ +LL + I + E + + + +++ L+ +L N ++ + L Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----IRKQPLRTALMRLNTTIIAQLLQ 303 Query: 311 --HKIDHRIH 318 +IDH + Sbjct: 304 QAKRIDHILK 313 >gi|297581333|ref|ZP_06943257.1| DNA polymerase III [Vibrio cholerae RC385] gi|297534649|gb|EFH73486.1| DNA polymerase III [Vibrio cholerae RC385] Length = 342 Score = 90.4 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LIQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|311069157|ref|YP_003974080.1| DNA polymerase III subunit delta [Bacillus atrophaeus 1942] gi|310869674|gb|ADP33149.1| DNA polymerase III subunit delta [Bacillus atrophaeus 1942] Length = 347 Score = 90.0 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 16/304 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79 H V+ YG + L+ E I + ++ + F+L V + ++++ + Sbjct: 15 HPVYCLYGKETYLLQETIGRIRQAVIDQETKDFNLSVFD---LEEDPLDLAVADAETFPF 71 Query: 80 FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 ++++++++N L+ EKK + LE I + + ++ + K + + Sbjct: 72 MGERRLVIVKNPYFLTGEKKKEKVEHNVSALEAYIQEPAPYTVFVLLAPYEKLDERKKLT 131 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + N D K I +EA + L+ + G + E+QK Sbjct: 132 KALKKKAFMVEAKELNAKETTDFTINLAKTEHKIIREEAAEHLVLLVNGHLSSIYQEIQK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +Y E I VK ++ + I E+IN + K ++ + L + Sbjct: 192 LCTYIGEREEIMLDDVKALVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPIKI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+L+ + E ++I + + P + + + R++++ +R + Sbjct: 252 MALISNQFRLILQTKYFAE-QGYGQKQIAANLK--VHPFRVKLAMDQARLFSEAELRHII 308 Query: 311 HKID 314 + Sbjct: 309 ESLA 312 >gi|225175088|ref|ZP_03729084.1| DNA polymerase III, delta subunit [Dethiobacter alkaliphilus AHT 1] gi|225169264|gb|EEG78062.1| DNA polymerase III, delta subunit [Dethiobacter alkaliphilus AHT 1] Length = 345 Score = 90.0 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 108/309 (34%), Gaps = 14/309 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V+IF GS+ L+ + + + + + + + +++ SLF Sbjct: 23 HPVYIFTGSEDFLMQDAVAAVYGLMEAKAAVSTDYSRIEGPQYA--LGDVLDMVDTVSLF 80 Query: 81 SKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +++ + + + K+ L L+ + + ++ + + K K E Sbjct: 81 GDSRMVTVADAPYFAKGAGSKEDLAKLQAYLARRDAASCVVFCARDFMKTTKAAK--ELA 138 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 S P L D + + + K+ S +L+ +G D NE+ KL++Y Sbjct: 139 ASGGVFVFEPLKGAALADWLRKRVASVGKTASSHTLNLLVERVGRDLRRLANEVDKLATY 198 Query: 195 CLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +D + E V + I + +A + G+ A+ L L + P +L Sbjct: 199 LGDDRQELDESTVMLATSRSIQGDIFALTDAVVYGRAPKALFLLKDLLGAGEPPLRILAM 258 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 +++F+LL H + + E I P L + + + + Sbjct: 259 LVRQFRLLGSAHELLNNGCRADEL---SARLGIHPYAAEKLVAQAYKASDAQLGRAVELL 315 Query: 314 DHRIHLARK 322 ++ Sbjct: 316 LQTDLDIKR 324 >gi|160933055|ref|ZP_02080444.1| hypothetical protein CLOLEP_01897 [Clostridium leptum DSM 753] gi|156868129|gb|EDO61501.1| hypothetical protein CLOLEP_01897 [Clostridium leptum DSM 753] Length = 349 Score = 90.0 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 131/352 (37%), Gaps = 23/352 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA ++ + ++ + F+ ++ YG +K LI + + F+ + Sbjct: 1 MAQLKESELKKQIKEKAFV--PLYFLYGEEKYLISHYTEAIVNKVLGKSYSDFNFQAFDG 58 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENL---STEKKVLDCLEEIIIKNICNHIIIIK 117 + +I + + LF+++K +L+++L + L L +++ + ++II Sbjct: 59 G--KASIDEIADAAQALPLFAERKCVLVKDLNVEALNAGELAKLYQLLEELSETTVLIIS 116 Query: 118 SNEI----KKNNTLRKI---AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + + K++ +K AEK +V+ + +I L + + +++ Sbjct: 117 QSTLEIDAKRSAKWKKFIAAAEKNGTVVLLE--KRGEIALEKQLVQWAEKRGCGLTQINA 174 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 ++ G D + +EL+KL +Y + IT + ++ + + NA + G Sbjct: 175 GKIIQLCGDDLLTLSSELEKLCAYAVG-REITMDDIDLLVTKNLETTVFVLGNALMAGNY 233 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A D K A+L + L + E + + + Sbjct: 234 DKAYQQLDLLFYQKEEPVAVLAVLSSNYVNLYRAKTALESGEKTSVLSKDFDYRGRDFLI 293 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK-----KKYLEKNIIFQTILY 337 RN + + + + +R++L + + + LE+ I +L Sbjct: 294 RNA-ERDCKRASISQLRKSLFLLAQADLALKSGRSEPRTVLEELIGKMMLLA 344 >gi|327402529|ref|YP_004343367.1| DNA polymerase III subunit delta [Fluviicola taffensis DSM 16823] gi|327318037|gb|AEA42529.1| DNA polymerase III, delta subunit [Fluviicola taffensis DSM 16823] Length = 332 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 105/271 (38%), Gaps = 8/271 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + I L + ++ F+L + +I + T +E S Sbjct: 17 PLYVLHGEEPYFIDVLSDALIEHAVDESEKDFNLAIYYGRDI--DALTLMSEARSFPFMG 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K++++ K + + LE+++ + ++I++I K + K E + Sbjct: 75 TRKVVVVREAQDLKDIYE-LEKLLPNLVESNILVICHKYKALDGKRKFTK--ELVKYGVN 131 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + +L + I + ++ +A +L LG D NEL KL+ + Sbjct: 132 FKSEKVKEYNLTEWISTYVRTEGYEVTSKAAALLGEFLGNDLSRIVNELDKLAIVLEKGT 191 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I++ H+++ I + + E++NA A +AD+F H+++ F+ Sbjct: 192 KISDVHIEENIGISKDYNVFELVNAIAIRDTLKAFQIADYF-EKNPKDHSIIVVIPSVFK 250 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 L + + + E I + K Sbjct: 251 LFTNMMRVHFAPTKTPEAIASSVGLHPFVAK 281 >gi|312905169|ref|ZP_07764290.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0635] gi|310631559|gb|EFQ14842.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0635] Length = 342 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + I ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNIFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|229525564|ref|ZP_04414969.1| DNA polymerase III delta subunit [Vibrio cholerae bv. albensis VL426] gi|229339145|gb|EEO04162.1| DNA polymerase III delta subunit [Vibrio cholerae bv. albensis VL426] Length = 342 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + S ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWSAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LIQLLKWQQERQRLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|153207817|ref|ZP_01946417.1| DNA polymerase III, delta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919081|ref|ZP_02219167.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 334] gi|212218822|ref|YP_002305609.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuK_Q154] gi|120576369|gb|EAX32993.1| DNA polymerase III, delta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917215|gb|EDR35819.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 334] gi|212013084|gb|ACJ20464.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuK_Q154] Length = 339 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 123/312 (39%), Gaps = 20/312 (6%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N +++ G L+ E + ++ F L +E + + + Sbjct: 13 NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69 Query: 76 STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKI 130 + SL S K +I + N ++ L + + + +II +N++ K+ Sbjct: 70 NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKV 129 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ +V+++ +P + L+ IE+ L E+ +L G+ +A+ ++K Sbjct: 130 IDRSGAVISL--WPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEK 187 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHA 249 L +D IT + + ++ D I ++ A + G + LA+ + A K Sbjct: 188 LRL-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLL 246 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ +LL + I + E + + + ++ L+ +L N ++ + Sbjct: 247 ILWAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQL 301 Query: 310 L---HKIDHRIH 318 L +IDH + Sbjct: 302 LQQAKRIDHILK 313 >gi|253681578|ref|ZP_04862375.1| DNA polymerase III, delta subunit [Clostridium botulinum D str. 1873] gi|253561290|gb|EES90742.1| DNA polymerase III, delta subunit [Clostridium botulinum D str. 1873] Length = 340 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 133/320 (41%), Gaps = 18/320 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++F GSD+ I I++ + + L+ + + ++ + N + L S+K Sbjct: 20 YVFCGSDEQSIRSNIDKIITKVVNKEFLELNYAQLDGMVV--DMESIINACETLPLMSEK 77 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132 ++++I + + +KV + L++ I + ++I I N+ +K ++ K + Sbjct: 78 RVVVIYRANFLRDKVDKSAEKVFNALKKYIKDLPEDCVLIMYYIFENDREKESSKLKKID 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ S + L + E K+I++ + + + NE++KL Sbjct: 138 KDATVVKFSKLK--GMALQKRVAEIFKRKNKNITRADLALFCNTVENNMDIIENEVEKLC 195 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y + IT + + ++I + I +++ Q K N++ + + + +L Sbjct: 196 CYTIGRD-ITTKDISNVIIGKNDNDIFNLVDFVSQKKPQNSLDILNELVFKGESVTGILR 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311 ++F+L+ I + E ++ ++I ++ + ++ +LQ + I + + Sbjct: 255 MIQRQFKLIFDIKLSIE-KGMNKDEISKELRLHPFICEKMMLQSKKFSISQLEKIFKLCI 313 Query: 312 KIDHRIHLARKKKYLEKNII 331 + + + E ++ Sbjct: 314 DTEKTLKSSSVNPKTELELL 333 >gi|81299216|ref|YP_399424.1| DNA polymerase III subunit delta [Synechococcus elongatus PCC 7942] gi|81168097|gb|ABB56437.1| DNA polymerase III, delta subunit [Synechococcus elongatus PCC 7942] Length = 332 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 105/292 (35%), Gaps = 16/292 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ F+G D+ + + + + + F+ + E + + + + Sbjct: 2 PVYYFWGEDEFALRQAVEKLRDRSVDPMWASFNSERI-PPEQADGVLVALSLALTPPFGA 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++ I + ++ D + + + +++ S +K L+K+AE Sbjct: 61 GQRFIWLPETPLAQQCSDAVYAELTRTLPQMPETTVLLFSSTGKPNGRLKSTKLLQKVAE 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 I + L + + + +EA L A +G +EL+KL Sbjct: 121 -LKEFSPIPPWRGEA--LEQQVVQVAHEVGVRLDREAVACLAAAVGNQTRQLYSELEKLK 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + +T + V+ ++ T ++ + A QG A+ L +AS P+ + Sbjct: 178 LFQGDRSEPVTARTVQALVSTTTQNSLQ-LAAAIRQGDCDRALSLVSDLIASNEPALRIS 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + +F++ + +++E + I P + + + + +R Sbjct: 237 ATLIGQFRMWLWVKLLQERGERDPQAIATAAGIG-NPKRVHFVLQEVRSLTS 287 >gi|315170256|gb|EFU14273.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1342] Length = 342 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKVT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAEAK 342 >gi|255972087|ref|ZP_05422673.1| DNA polymerase III subunit delta [Enterococcus faecalis T1] gi|255975154|ref|ZP_05425740.1| DNA polymerase III subunit delta [Enterococcus faecalis T2] gi|256763138|ref|ZP_05503718.1| DNA polymerase III subunit delta [Enterococcus faecalis T3] gi|255963105|gb|EET95581.1| DNA polymerase III subunit delta [Enterococcus faecalis T1] gi|255968026|gb|EET98648.1| DNA polymerase III subunit delta [Enterococcus faecalis T2] gi|256684389|gb|EEU24084.1| DNA polymerase III subunit delta [Enterococcus faecalis T3] Length = 336 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 11 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 68 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 69 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 126 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 127 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 186 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 187 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 246 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 247 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 303 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 304 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 336 >gi|229048029|ref|ZP_04193604.1| DNA polymerase III, delta subunit [Bacillus cereus AH676] gi|228723273|gb|EEL74643.1| DNA polymerase III, delta subunit [Bacillus cereus AH676] Length = 300 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 98/257 (38%), Gaps = 9/257 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++LI++ L+++K+ L+ LEE I + I++ + K + + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I I A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT + V +++ + + + ++ I A+ + D + LL Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECS 271 + +F+LL ++ +++ Sbjct: 253 VSQFRLLYQVKELQQRG 269 >gi|227512164|ref|ZP_03942213.1| DNA polymerase III subunit delta [Lactobacillus buchneri ATCC 11577] gi|227084558|gb|EEI19870.1| DNA polymerase III subunit delta [Lactobacillus buchneri ATCC 11577] Length = 342 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 42/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++ HK V++ G L +Q K+ + D + + Sbjct: 7 MTQLKQHKQDA-----------VYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51 Query: 61 LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110 ++++ + E S F ++++++I S + +D E + Sbjct: 52 YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111 Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + I++I + ++ + K +K + + I +++ + +++ + +I ++ Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYAIDED 169 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A + ++ G + N+L KL Y + IT V ++ + + +++N+ ++ Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 ++ + + + +Q+F+LL ++ +I + S + + + P Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + + +++R ++ +R+ + + Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322 >gi|228993066|ref|ZP_04152989.1| DNA polymerase III, delta subunit [Bacillus pseudomycoides DSM 12442] gi|228766714|gb|EEM15354.1| DNA polymerase III, delta subunit [Bacillus pseudomycoides DSM 12442] Length = 337 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 125/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++KI+L+++ L+++K+ L+ LEE + + I++ + K + + Sbjct: 73 ERKILLVKSPLFLTSQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I + I + A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT V +++ + + + ++ I A+++ D + LL Sbjct: 193 VGIGGEITTGLVAELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|315144862|gb|EFT88878.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2141] Length = 342 Score = 90.0 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 126/335 (37%), Gaps = 22/335 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN-EINSTSLF 80 V++ G++ L K + D F+ + I++ + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFD---IEETPLSAAIAEAETIPFF 73 Query: 81 SKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 74 GDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKV 131 Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K + + P ++ + I +++ +I +A +LL + ELQ Sbjct: 132 TKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQ 191 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y LE IT V++++ + + ++ N + G A+ L + L + Sbjct: 192 KLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIK 251 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L L + +L + I+ I + + P + + + +R + + + Sbjct: 252 LNAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERL 308 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 309 YDELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|312869041|ref|ZP_07729218.1| DNA polymerase III, delta subunit [Lactobacillus oris PB013-T2-3] gi|311095467|gb|EFQ53734.1| DNA polymerase III, delta subunit [Lactobacillus oris PB013-T2-3] Length = 340 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 101/268 (37%), Gaps = 15/268 (5%) Query: 71 WNEINSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 ++ S F ++++++I + L + + + ++ + Sbjct: 63 LDDAVSAPFFGERRLVIINKPYFLTNEKRGGKVDHDLSAVIKYLHHPEPTTTLVFLAPYE 122 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K + + + E + +S P ++ +E L +I A ++L+ D Sbjct: 123 KLDGRKKLVKELKKVAVNVSAAPLDERSARQQVEGQLRQAGFTIDDAALELLVQRTNADY 182 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + KL +D IT V+ ++ + + +++ A ++ ++ L L Sbjct: 183 GLMVANVAKLEILAYQDKHITAPMVQALVPQSLDDNVFDLVTAVLRRDQPRSLELYQQLL 242 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 AS+ + + +F+LL ++ ++ +S I + N+ P + + ++R + Sbjct: 243 ASQKQPLQINAVLVSQFRLLIQLKVLV-NHGLSQGSI--ASRLNVHPYRVKLGLRTVRQF 299 Query: 302 NKNLVRET---LHKIDHRIHLARKKKYL 326 + + L KI+ + ++ L Sbjct: 300 SLERLANAYLGLVKIEQNLKTTQRDPEL 327 >gi|256956723|ref|ZP_05560894.1| DNA polymerase III subunit delta [Enterococcus faecalis DS5] gi|256961260|ref|ZP_05565431.1| DNA polymerase III subunit delta [Enterococcus faecalis Merz96] gi|293383545|ref|ZP_06629455.1| DNA polymerase III, delta subunit [Enterococcus faecalis R712] gi|293387342|ref|ZP_06631898.1| DNA polymerase III, delta subunit [Enterococcus faecalis S613] gi|300860264|ref|ZP_07106351.1| DNA polymerase III, delta subunit [Enterococcus faecalis TUSoD Ef11] gi|312899876|ref|ZP_07759194.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0470] gi|312906095|ref|ZP_07765107.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 512] gi|312909441|ref|ZP_07768296.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 516] gi|256947219|gb|EEU63851.1| DNA polymerase III subunit delta [Enterococcus faecalis DS5] gi|256951756|gb|EEU68388.1| DNA polymerase III subunit delta [Enterococcus faecalis Merz96] gi|291079057|gb|EFE16421.1| DNA polymerase III, delta subunit [Enterococcus faecalis R712] gi|291083240|gb|EFE20203.1| DNA polymerase III, delta subunit [Enterococcus faecalis S613] gi|300849303|gb|EFK77053.1| DNA polymerase III, delta subunit [Enterococcus faecalis TUSoD Ef11] gi|310627741|gb|EFQ11024.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 512] gi|311290114|gb|EFQ68670.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 516] gi|311292872|gb|EFQ71428.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0470] gi|315032939|gb|EFT44871.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0017] gi|315035757|gb|EFT47689.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0027] gi|323481435|gb|ADX80874.1| DNA polymerase III, delta subunit [Enterococcus faecalis 62] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKVT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|256853806|ref|ZP_05559171.1| DNA polymerase III subunit delta [Enterococcus faecalis T8] gi|257421913|ref|ZP_05598903.1| DNA polymerase III subunit delta [Enterococcus faecalis X98] gi|307290500|ref|ZP_07570413.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0411] gi|256710749|gb|EEU25792.1| DNA polymerase III subunit delta [Enterococcus faecalis T8] gi|257163737|gb|EEU93697.1| DNA polymerase III subunit delta [Enterococcus faecalis X98] gi|306498447|gb|EFM67951.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0411] gi|315030175|gb|EFT42107.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4000] gi|315155379|gb|EFT99395.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0043] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAEAK 342 >gi|198282757|ref|YP_002219078.1| DNA polymerase III subunit delta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666035|ref|YP_002424953.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247278|gb|ACH82871.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518248|gb|ACK78834.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 330 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 96/251 (38%), Gaps = 18/251 (7%) Query: 68 STFWNEINSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +E ++ SLF+ ++++L+ S + K+ L+ + + ++++ + + Sbjct: 61 DALRDERDAGSLFAAQRVLLLRLDSPKVPKEASAALQYWLASPPPDALLVLSGP--RPDA 118 Query: 126 TLRKIA-----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +++K A E L + Y +E+ L A Q+L G+ Sbjct: 119 SIQKTAWFKGIETHGHTLLL--YRPEGQDWPRWVEQRLRAAGMQADSAAVQLLTDLSAGN 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A +Q+L I ++ ++ D+ I ++ +A ++G+ + + + D Sbjct: 177 LGACHQAIQRLQQ-VYPGQRIDAVAIRAVLADSSQFTIYDLADAVLRGETEHMLHMLDRL 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + +LL ++ + + ++ I P ++ L+ + R Sbjct: 236 RNGDGEPALCLWVLHKDLRLLAELR----AGGVDVDAFFRQNR--IFPPRQGWLRTAARR 289 Query: 301 WNKNLVRETLH 311 ++ ++ + Sbjct: 290 LTRSGLQAGIK 300 >gi|121729829|ref|ZP_01682262.1| DNA polymerase III, delta subunit [Vibrio cholerae V52] gi|147673713|ref|YP_001216427.1| DNA polymerase III subunit delta [Vibrio cholerae O395] gi|262168632|ref|ZP_06036327.1| DNA polymerase III delta subunit [Vibrio cholerae RC27] gi|121628433|gb|EAX60927.1| DNA polymerase III, delta subunit [Vibrio cholerae V52] gi|146315596|gb|ABQ20135.1| DNA polymerase III, delta subunit [Vibrio cholerae O395] gi|227012770|gb|ACP08980.1| DNA polymerase III, delta subunit [Vibrio cholerae O395] gi|262022750|gb|EEY41456.1| DNA polymerase III delta subunit [Vibrio cholerae RC27] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ L+ E +K F + + + + ++ + SLF Sbjct: 17 YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L ++ + + ++++ ++ K + Sbjct: 74 SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWLKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D L+T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ + + + Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|90414085|ref|ZP_01222068.1| DNA polymerase III subunit delta [Photobacterium profundum 3TCK] gi|90324880|gb|EAS41408.1| DNA polymerase III subunit delta [Photobacterium profundum 3TCK] Length = 343 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 109/296 (36%), Gaps = 10/296 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 F+ +G++ + E +Q K+ ++ Q + + N + SLF Sbjct: 17 RQAFLLFGNEPLIKQECADQIKQCAQQAGFHERHAFTIDN---QLDWNEVLNCCQAMSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137 S ++II +E L EII + +++++ + K K + F ++ Sbjct: 74 SAQQIIELEVPESGLNVNQAKALLEIISHLNDDILLLLQGPRLNKKQESAKWFKAFENIS 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L I C + HL I+ + E+ +L G+ +A LQKL+ Sbjct: 134 LYIPCNTPDTRHLPRFIQARCQQLKLKPDHESVVLLAQWHEGNLLALAQSLQKLTL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++++A + G+ + + + + LL ++ Sbjct: 193 DGELTVPRLQESLSRHNHYTPFQLLDAVLAGQAKRSQRVLRQLQGEGIEATILLRTLQRE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L K+ I ++ I +R + +L + + L ++ Sbjct: 253 LTQLYKMQ-EMGMKGTPLNNIFEQYR--IWQSRREVYIGALHRLPLTTLIQLLQRL 305 >gi|253574664|ref|ZP_04852004.1| DNA polymerase III, delta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251845710|gb|EES73718.1| DNA polymerase III, delta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 115/306 (37%), Gaps = 19/306 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++K I E ++ + + F++ + E I E + Sbjct: 19 PLYVCYGTEKYQIQEFVSLLQDQLVDPDQKDFAIATFDLAET--PIEVVVEEAETMPFLV 76 Query: 82 KKKIILIENL----STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129 ++K+I++ + + K+ ++ L I + +++ + ++ + + K Sbjct: 77 ERKLIVVRDSTLLVAGGKEGGKIEHKVEALLTYIGNPAEHSVVVFVVNGEKLDERKKVVK 136 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + +VL+ P L+ + + + I ++A + L+A G E+ Sbjct: 137 AIKAAGTVLSF--LPLGGGELVQWVVQEVEKRGCRIGRDAAEALIAASGVQMAVLAAEMD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y +I V+ ++ + + ++ ++ A+ + L + Sbjct: 195 KLCLYAGAGGMIDTAAVEQLVARSTEQNVFVMVEHIAAIRLEQALGIFYELLKQREEPIK 254 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + ++F + +KE + S+ + ++ ++ P + + R + ++ Sbjct: 255 IAALIARQF---RIMLQVKELARQSYSQQQIASQLSLHPYVVKLAGDQARKFETGRLKAI 311 Query: 310 LHKIDH 315 L ++ Sbjct: 312 LSELAE 317 >gi|85058779|ref|YP_454481.1| DNA polymerase III subunit delta [Sodalis glossinidius str. 'morsitans'] gi|84779299|dbj|BAE74076.1| DNA polymerase III delta subunit [Sodalis glossinidius str. 'morsitans'] Length = 343 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 112/307 (36%), Gaps = 18/307 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G+D L+ E ++ + D V L+A + ++ + SLF Sbjct: 18 RPCYLLFGNDPLLLQESQDRIRDRAQAQQFDERFSVTLDAAT---DWDAIFSLCQARSLF 74 Query: 81 SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ ++++ + + + + ++ + ++I++ +++ + + + Sbjct: 75 ASRQTLLLVLPDGGINAAMAEKMLQLASLLHDDVLLILRGSKLTRATENDSWFKALSQNA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + +SC + L + + ++ A Q+L G+ +A L++LS Sbjct: 135 VLVSCTTPEQAQLPRWVARRAASMKLTLDDAACQLLCYCYEGNLLALAQALERLSL-LYP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + K A + LL ++ Sbjct: 194 DGSLTLPRVEAAVNDAAHFTPFHWVDAALADKSKRAAHILRQLRLEATEPVILLRSIQRE 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKT--EKNIIPMKRNILQESLRIWNKNLVR---ETLHK 312 LL + + ++ + +R++L +++ +R + K Sbjct: 254 VLLLLTL------KRQTAVAPLRTLFDRHKVWQNRRSLLTQAIGRLTLAQLRDTVALMTK 307 Query: 313 IDHRIHL 319 I+ + Sbjct: 308 IELALKQ 314 >gi|227524106|ref|ZP_03954155.1| DNA polymerase III subunit delta [Lactobacillus hilgardii ATCC 8290] gi|227088737|gb|EEI24049.1| DNA polymerase III subunit delta [Lactobacillus hilgardii ATCC 8290] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 41/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++ HK +++ G L +Q K+ + D + + Sbjct: 7 MTQLKQHKQDA-----------IYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51 Query: 61 LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110 ++++ + E S F ++++++I S + +D E + Sbjct: 52 YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111 Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + I++I + ++ + K +K + + I +++ + +++ + +I ++ Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYAIDED 169 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A + ++ G + N+L KL Y + IT V ++ + + +++N+ ++ Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 ++ + + + +Q+F+LL ++ +I + S + + + P Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + + +++R ++ +R+ + + Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322 >gi|29376940|ref|NP_816094.1| DNA polymerase III subunit delta [Enterococcus faecalis V583] gi|227519837|ref|ZP_03949886.1| DNA polymerase III subunit delta [Enterococcus faecalis TX0104] gi|227553978|ref|ZP_03984025.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22] gi|229545134|ref|ZP_04433859.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322] gi|229549382|ref|ZP_04438107.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 29200] gi|256616997|ref|ZP_05473843.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 4200] gi|256963613|ref|ZP_05567784.1| DNA polymerase III subunit delta [Enterococcus faecalis HIP11704] gi|257079677|ref|ZP_05574038.1| DNA polymerase III subunit delta [Enterococcus faecalis JH1] gi|257081976|ref|ZP_05576337.1| DNA polymerase III subunit delta [Enterococcus faecalis E1Sol] gi|257087476|ref|ZP_05581837.1| DNA polymerase III subunit delta [Enterococcus faecalis D6] gi|257090635|ref|ZP_05584996.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188] gi|257416683|ref|ZP_05593677.1| DNA polymerase III subunit delta [Enterococcus faecalis AR01/DG] gi|257419899|ref|ZP_05596893.1| DNA polymerase III delta subunit [Enterococcus faecalis T11] gi|294780835|ref|ZP_06746190.1| DNA polymerase III, delta subunit [Enterococcus faecalis PC1.1] gi|307270795|ref|ZP_07552085.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4248] gi|307271553|ref|ZP_07552825.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0855] gi|307277120|ref|ZP_07558224.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2134] gi|307285772|ref|ZP_07565906.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0860] gi|307287675|ref|ZP_07567718.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0109] gi|312953527|ref|ZP_07772365.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0102] gi|29344405|gb|AAO82164.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|227072727|gb|EEI10690.1| DNA polymerase III subunit delta [Enterococcus faecalis TX0104] gi|227176881|gb|EEI57853.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22] gi|229305619|gb|EEN71615.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 29200] gi|229309679|gb|EEN75666.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322] gi|256596524|gb|EEU15700.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 4200] gi|256954109|gb|EEU70741.1| DNA polymerase III subunit delta [Enterococcus faecalis HIP11704] gi|256987707|gb|EEU75009.1| DNA polymerase III subunit delta [Enterococcus faecalis JH1] gi|256990006|gb|EEU77308.1| DNA polymerase III subunit delta [Enterococcus faecalis E1Sol] gi|256995506|gb|EEU82808.1| DNA polymerase III subunit delta [Enterococcus faecalis D6] gi|256999447|gb|EEU85967.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188] gi|257158511|gb|EEU88471.1| DNA polymerase III subunit delta [Enterococcus faecalis ARO1/DG] gi|257161727|gb|EEU91687.1| DNA polymerase III delta subunit [Enterococcus faecalis T11] gi|294452080|gb|EFG20527.1| DNA polymerase III, delta subunit [Enterococcus faecalis PC1.1] gi|295113493|emb|CBL32130.1| DNA polymerase III, delta subunit [Enterococcus sp. 7L76] gi|306501413|gb|EFM70716.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0109] gi|306502533|gb|EFM71800.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0860] gi|306506050|gb|EFM75216.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2134] gi|306511825|gb|EFM80823.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0855] gi|306512909|gb|EFM81551.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4248] gi|310628539|gb|EFQ11822.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0102] gi|315025367|gb|EFT37299.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2137] gi|315146722|gb|EFT90738.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4244] gi|315150116|gb|EFT94132.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0012] gi|315152017|gb|EFT96033.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0031] gi|315159045|gb|EFU03062.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0312] gi|315161638|gb|EFU05655.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0645] gi|315166360|gb|EFU10377.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1341] gi|315174002|gb|EFU18019.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1346] gi|315574322|gb|EFU86513.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0309B] gi|315579115|gb|EFU91306.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0630] gi|315580203|gb|EFU92394.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0309A] gi|327535730|gb|AEA94564.1| DNA-directed DNA polymerase III delta subunit [Enterococcus faecalis OG1RF] gi|329572340|gb|EGG53997.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1467] Length = 342 Score = 89.6 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|303251266|ref|ZP_07337444.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252501|ref|ZP_07534397.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649808|gb|EFL79986.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860093|gb|EFM92110.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 341 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 112/313 (35%), Gaps = 18/313 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D LI E + + + D V + ++ + S LF Sbjct: 19 PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDTKWED---LFEAAQSNGLFF 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136 ++II++ + + + E+ + + ++I+ S ++K +I Sbjct: 76 NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C L I + I EA Q+L + G+ +A + LQ L Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ K+++ + + I+A ++GKI A + ++ LL + Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251 Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310 + LLE + N + + + +R Q +++ + + + Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311 Query: 311 HKIDHRIHLARKK 323 ++ +++ Sbjct: 312 QRLAELEKQVKQE 324 >gi|315224748|ref|ZP_07866571.1| DNA-directed DNA polymerase III delta subunit [Capnocytophaga ochracea F0287] gi|314945376|gb|EFS97402.1| DNA-directed DNA polymerase III delta subunit [Capnocytophaga ochracea F0287] Length = 338 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 9/270 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + + + ++ F +VL ++ + T + + S Sbjct: 18 PIYFLMGEEPYFIDIVSDYIEDHVLQEDQKGFDQIVLYGQDVS--VPTIIDYARRFPMMS 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++I+++ K +D L + +++ K ++ L K +K + Sbjct: 76 DHQVIIVKEAQNLKSTIDQLVPYVENPTPTTVLVFCYKYEKLDARKKLLKTLQKNKDCVL 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + + + L SI +A Q+L+ LG D +NE+ KL+ E+ Sbjct: 136 LESKKLYENQIATWLPDVLKKKHLSIQPKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 +T ++ I + E+ NA +Y + F + P L Sbjct: 196 EVTPDIIEKNIGISKEFNNYELKNAIAVHDMYKITRILKHFADNPKDNPLVMTLTVLYGY 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNII 287 FQ L H + + S + ++ + I Sbjct: 256 FQQLLGFHGLTDQSEKN---VMATLKVPIF 282 >gi|312621883|ref|YP_004023496.1| DNA polymerase III subunit delta [Caldicellulosiruptor kronotskyensis 2002] gi|312202350|gb|ADQ45677.1| DNA polymerase III, delta subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 335 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 57/349 (16%), Positives = 138/349 (39%), Gaps = 27/349 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA ++ + I++ L F +++FYG + LI E +F I + ++V Sbjct: 1 MAE-KTKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTKRFSHAIVGGNLN--NIVRF 57 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112 + N + NE+ S S + ++++ +N ++ + ++ + + Sbjct: 58 DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSSLNLSSIIDNLKNFKSDST 115 Query: 113 IIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 II K E K+N + L++IA V PD L+ ++ + K+IS Sbjct: 116 YIIFKEYETKENKLFSGLKQIAFSAEFVQ--PSMPD----LVKWVQNVMSKEGKTISDNM 169 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q ++ + D + N LQ L SY + +T + + D +I ++++A Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + + + +L L+ F++L + ++E + K + E + Sbjct: 230 LESGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + + ++ + K ++ ++ + ++ + + I Sbjct: 287 DK--YKKQAETFTLDKIKTIIQKTIECEYMIKRGQIDDETALEMLLYQI 333 >gi|257868068|ref|ZP_05647721.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC30] gi|257874398|ref|ZP_05654051.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC10] gi|257876957|ref|ZP_05656610.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20] gi|257802151|gb|EEV31054.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC30] gi|257808562|gb|EEV37384.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC10] gi|257811123|gb|EEV39943.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20] Length = 345 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 123/297 (41%), Gaps = 21/297 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 +++ GS+ L ++ F + S+ D + + +++K+ E S F Sbjct: 24 IYLVIGSEMFLQEQVRTAFLERFSVGKDD----LNFASFDMEKDPLDMVIQEAQSLPFFG 79 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++ +E L+ EKK LD I + + +++I ++ ++ + + K Sbjct: 80 DQRLLFVERPFFLTAEKKSNAPEHDLDDFLNYIKDPLESSVMVIFADVDKLDERKKITKQ 139 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K V+ ++ + + +++SL +S+EA + L + ELQK Sbjct: 140 LKKAAVVIDVAPMKE--ADVRQYLQQSLANDGIEMSREAFDLFLRLTDLHLSKAMQELQK 197 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y IT++ V +I T + E+ + ++G + +A+ L D L + + Sbjct: 198 LRLYAGNGNKITKEIVLQLIPKTLEHNVFELTSDVLKGNVSDALRLYDDLLLQGEETIKI 257 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + + +LL + I+ + +++ I P + + + R + + + Sbjct: 258 NAILISQVRLLLQAAILMKIG---YQQANIAETLGIHPYRVKLAMQQARGFGEKQLA 311 >gi|257084528|ref|ZP_05578889.1| DNA polymerase III subunit delta [Enterococcus faecalis Fly1] gi|256992558|gb|EEU79860.1| DNA polymerase III subunit delta [Enterococcus faecalis Fly1] Length = 342 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 129/334 (38%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 +++ +EN L+ E+K ++ L + +++ ++ ++ + + K Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDERKKITKA 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K +++ + P ++ + I +++ +I +A +LL + ELQK Sbjct: 135 LKKNATIVDV--NPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALEMKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + + Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|225873598|ref|YP_002755057.1| DNA polymerase III, delta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791876|gb|ACO31966.1| DNA polymerase III, delta subunit [Acidobacterium capsulatum ATCC 51196] Length = 376 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 114/330 (34%), Gaps = 30/330 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++F G + L + F L L+ E+ NI + + SL Sbjct: 21 RPGYVFAGDEIFLYERCRKAILTALVPPEMRDFCLSDLDLSEV--NIFEALDRARTPSLM 78 Query: 81 SKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI---- 130 + +++ + NL ++K+ +EE +++ ++ ++ R++ Sbjct: 79 APFQVLFLRNLKTLYTRGSKKEEFAAIEEYFRSPNPQALVLFVADHLRIPADPRRMDMDD 138 Query: 131 ---AEKFTSVLAISC------YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 E+ L C D L L ES + I +A + L+ LG D Sbjct: 139 KNRYERLRETLGEWCGMVELARVDEADALRWLTAES-KQYEIQIDSDAARELVDALGADM 197 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + NE +KL Y E IT V+ ++ + E+ +A AI L L Sbjct: 198 MMVSNEFEKLVLYVGEKKRITLGDVETMVLAAKQRSLYELTDAISAKDKVRAISLLHGLL 257 Query: 242 ----ASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQ 295 + + L+ + F Q+L + S ++ + Q ++++ Sbjct: 258 NASDGGEDSAIGHLYMLARTFRQMLVILEKNVRDSRAIWQALWQGFRMPP--FAADDLIR 315 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 ++ R ++ + L I R + Sbjct: 316 QARRYKSRRDLTRALRLIARADMELRSQPP 345 >gi|226939051|ref|YP_002794122.1| DNA polymerase III subunit delta [Laribacter hongkongensis HLHK9] gi|226713975|gb|ACO73113.1| HolA [Laribacter hongkongensis HLHK9] Length = 335 Score = 89.6 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 113/311 (36%), Gaps = 11/311 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E + + H ++ + + S S+SLF+ Sbjct: 18 PLYVIHGDEMLLALEAADAIRAAARAAGHLEREVLTVEGHF---DWSLLTAAAGSSSLFA 74 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +K+ I + + + + L + + + + ++ + K K + S + Sbjct: 75 DRKLLEIHLPSGKPGTEGAEALVRLAARLPDDTVTLVLLPRLDKTQQASKWFKALDSAGV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++ + L I L Q+S++ EA + + G+ +A+R E+ KL+ Sbjct: 135 TLAAQAVERRELPGWISRRLARQQQSLTPEALAFMADRVEGNLLAARQEIDKLAL-LHPP 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + ++ + D + ++ A + G+ + A L ++ Sbjct: 194 GELELAALQAAVADVARFDVFQLNAAWLAGETARVARMLAGLEAEGEAPVLALWSVAEEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L +I I +++++ + ++ + + +LR + ++ L + I Sbjct: 254 RSLIRIRIGL-RDGKPMAQLLRENR--MWGERQRLAEPALRRLGQARLQAALSEC-AAID 309 Query: 319 LARKKKYLEKN 329 A K + Sbjct: 310 RAIKGAGPGEP 320 >gi|323490046|ref|ZP_08095267.1| hypothetical protein GPDM_11865 [Planococcus donghaensis MPA1U2] gi|323396342|gb|EGA89167.1| hypothetical protein GPDM_11865 [Planococcus donghaensis MPA1U2] Length = 342 Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 113/312 (36%), Gaps = 20/312 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80 V++ G++ I + ++ K +++ + L ++ + +E ++ F Sbjct: 16 PVYLIVGTESYFIEKTLDLLKDKLTVDGE-----LELTFFDLDEVPVEHVIDEADTFPFF 70 Query: 81 SKKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 S +K+I+ N S K L LE + + + I + K + + Sbjct: 71 SDRKLIIARNASFLKAAERGKEKINHDLKALEAWLEHPPSSSVTIFVAPYEKLDERKKVT 130 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + I L + K I +A Q L+ G + +E++K Sbjct: 131 KQMKQHTVLIEAKSLQANDLETWLMHEAKNFGKGIGIKAAQRLMEMAGTNLTLLSSEIEK 190 Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +S Y IT + V+ + T +++ A + G + A+ + L K A Sbjct: 191 MSLYLGSSDEDITVELVEQMTARTLEQDAFKMLQAYLDGNVSEALSVYYDLLRQKEEPVA 250 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L + + + +++ + + ++I ++ + P + +L E + ++ + Sbjct: 251 LTALLASQIRFMIQVYYL-QKKGYHAQQISKQLKA--HPYRVKLLVEKRQQISEKRLLLV 307 Query: 310 LHKIDHRIHLAR 321 L + + Sbjct: 308 LGDLADIDLQLK 319 >gi|322436272|ref|YP_004218484.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX9] gi|321163999|gb|ADW69704.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX9] Length = 394 Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 121/375 (32%), Gaps = 39/375 (10%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 S +F+ + ++ G + L + ++ F L L+ E Sbjct: 12 SDRFLSELRSGSL--RPGYVLAGDEAFLYQRCRDGVLDALAPPDQRDFCLHDLDLGETA- 68 Query: 66 NISTFWNEINSTSLFSKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSN 119 I + + SL ++I + L ++K+ ++ + +I+ ++ Sbjct: 69 -IFDVLDRAQTPSLMVPFQVIFVRGLKALYGRGSKKEEFAAIDAYFRRPNPQALILFVAD 127 Query: 120 EIKKNNTLRKI--AEKFTSVLAISCYPD----------NKIHLMDLIEESLLIGQKSISK 167 + LR++ +K D + + E+ I Sbjct: 128 HLSIPTDLRRMDMTDKERYDRIRETLGDWCGLVELARVEEGDAARWLMETAAERGARIET 187 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDI-------------LITEQHVKDIICDTH 214 +A + L+ LG D + +E +KL Y IT V+ ++ Sbjct: 188 DAARELVDALGADMMLIASEFEKLCLYAQGKQLLTLAGKPAVETPAITLGDVETMVLAAK 247 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFL----ASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + E+ +A A+ L L + + L+ + F+ + I Sbjct: 248 QRSLYELTDAISAKDRPRALGLLHGLLNASDGGEDSAIGHLYMLARTFRQMLIISEKNVR 307 Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 + + ++ + + +++++ R ++ + L I R ++ + Sbjct: 308 DSRAIWGVLWQGFRMPPFAAEELIKQARRYKSRGDLTRALRLIAKADLEIRSSPPDKRLV 367 Query: 331 IFQTILYIAQTACKN 345 + + +L +A A N Sbjct: 368 LERLVLGLATEAKVN 382 >gi|325920734|ref|ZP_08182640.1| DNA polymerase III, delta subunit [Xanthomonas gardneri ATCC 19865] gi|325548786|gb|EGD19734.1| DNA polymerase III, delta subunit [Xanthomonas gardneri ATCC 19865] Length = 342 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 101/287 (35%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDATFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ I + K D + + +++I +N+ K + K A+ + Sbjct: 76 PRRLVEIRLPSGKPGKDGADVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 IS + L D IE L A Q L + G+ +A+ E+ KL + Sbjct: 135 ISVAWAIKPHELSDWIERRLRSHGLRADAAAVQRLSERVEGNLLAAAQEIDKLVLLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|254443986|ref|ZP_05057462.1| DNA polymerase III, delta subunit [Verrucomicrobiae bacterium DG1235] gi|198258294|gb|EDY82602.1| DNA polymerase III, delta subunit [Verrucomicrobiae bacterium DG1235] Length = 369 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 100/263 (38%), Gaps = 21/263 (7%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINSTSLFSK 82 G D L L + + D FS+ V++ E+ ++ F + + + LF Sbjct: 11 GPDDYLASRLAREIWAELKKDVTDDFSIEVISGQVGKVDEVADAVNRFRDAVQTLGLFGG 70 Query: 83 KKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKI 130 ++++ +++ K+ + L+E++ N ++I ++ + + K Sbjct: 71 RRVVWLKDVTFVADNQVGRAEGTVKLCEDLQEVLESVNPAEVGVLISASPVDRRKRFAKY 130 Query: 131 AEKF---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 EK + L+ + Q +I+++A ++L++ + G+ E Sbjct: 131 LEKSGDYRPSGGMDSKGGGVETLLAAMNRECEALQVTIARDAVEVLISKVNGNSRLLIEE 190 Query: 188 LQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 ++KL +Y E IT + ++++ + E A I + S Sbjct: 191 VRKLGTYLGEPGAQITSKLIEELTPNFGEGDFFESTEAFFSRDINWTLSALRRHFFSGND 250 Query: 247 SHALLHGFLQKFQLLEKIHIIKE 269 + ++ + +LL ++ + + Sbjct: 251 ARPVIASLQNRNRLLIQLRSLVD 273 >gi|323495449|ref|ZP_08100526.1| DNA polymerase III subunit delta [Vibrio brasiliensis LMG 20546] gi|323310372|gb|EGA63559.1| DNA polymerase III subunit delta [Vibrio brasiliensis LMG 20546] Length = 337 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 117/319 (36%), Gaps = 14/319 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + + +++ K L H ++ +G++ L+ E +K + +++ Sbjct: 5 ADRLVEQLAKQL---HPTYLIFGNEPLLLQESRQAIQKAAHQQGFEERHRFAIDSSF--- 58 Query: 66 NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLFS ++II +E + L + + I++I +++ K Sbjct: 59 DWNLVYDCCQAMSLFSARQIIELELPEAGVNAGIAKELLSVSDLLHSDVILVIIGSKLTK 118 Query: 124 NNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + +S ++C + L ++ EA Q+L G+ Sbjct: 119 AQENAKWFKALSSQGCWVNCLTPDIQRLPQFVQVRCRALGLKPDPEAVQMLAQWHEGNLF 178 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L+KL+ D ++ +++ + + I+A + GK + + A Sbjct: 179 ALTQSLEKLAL-LYPDGVLNLVRLEESLSRHNHFTAFHWIDALLAGKAKRSQRILRQLEA 237 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + + L ++ L + + + ++ +K I KR + +L + Sbjct: 238 EGVETVILARTVQKELTQLLTMSQLVQTQ--PIGQVFEKYR--IWQSKRPLYSAALNRLS 293 Query: 303 KNLVRETLHKIDHRIHLAR 321 + + L + + + Sbjct: 294 PVKIMQLLQLLAQTERMIK 312 >gi|332686734|ref|YP_004456508.1| DNA polymerase III subunit delta [Melissococcus plutonius ATCC 35311] gi|332370743|dbj|BAK21699.1| DNA polymerase III delta subunit [Melissococcus plutonius ATCC 35311] Length = 345 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 120/298 (40%), Gaps = 21/298 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY-HDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ G+++ LI FKKN+S L L+ + ++ E + F Sbjct: 17 PIYLLTGTEQYLIE----LFKKNLSQAIFKGDGQLNSLSFDMEETSLEVAIEEAETVPFF 72 Query: 81 SKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129 ++I I+N +S K +D L + I + + ++++ +N ++ + + K Sbjct: 73 DDYRLIFIKNPYFLMSERKNKEIEQNIDRLIDYIKQPLATSVVVLIANVAKLDQRKKITK 132 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + +K I N+ L EE++ +I +A ++L+ + NE Q Sbjct: 133 LLQKQ--AKNIDVNSMNERELYRYTEETIKAEGYTIRADALELLMQLTNFNLSKLINETQ 190 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL SY + +IT VK+++ + + E+ N + GK AI L + Sbjct: 191 KLFSYAWDTKIITYIMVKELVPRSLEDNVFELANKLLIGKTDEAIELYKDLVLQGEEIIK 250 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + +LL + I+ + I++ I P + I + +R + Sbjct: 251 LNAILINQMRLLIQTKILVQLGYQQAN-IVETLG--IHPYRVKIAMQQVRNSELKHLE 305 >gi|329725384|gb|EGG61867.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis VCU144] Length = 324 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 119/343 (34%), Gaps = 42/343 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ +F YG L+ + + + D F+ V N E E + Sbjct: 1 MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124 FS KK I+++N + EK D L + + K ++II + ++ + Sbjct: 59 FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118 Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 L+KI + + L I+ +L K I ++A ++ + Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + EL+KL + E +I ++ + II + + + +G AI L Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295 + + K LL ++L + I+ + K + P + + Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + ++ + + ++ I+ IL + Sbjct: 282 NQYRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324 >gi|227529054|ref|ZP_03959103.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus vaginalis ATCC 49540] gi|227351066|gb|EEJ41357.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus vaginalis ATCC 49540] Length = 345 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 109/268 (40%), Gaps = 15/268 (5%) Query: 71 WNEINSTSLFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEI 121 ++ + F +++++LI + EK LD L + + I++ + Sbjct: 63 LDDAMAAPFFGERRLVLINKPYFFTGEKGPAKIEHDLDSLSNYLQHPEPSTILVFLAPYE 122 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K + + + E + + P ++ H + L Q +I + A L+ D Sbjct: 123 KLDGRKKIVKELKKVAVTVDTAPLDEAHARQQVRAELTSDQYTIDETAIDELVQRTNADY 182 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 L KL +D IT+Q VK+++ + + +++NA ++ +I L D + Sbjct: 183 ELMNANLSKLKLLTYQDRHITQQAVKELVPQSLDENVFDLVNAVLKHDQPRSIDLYDQLI 242 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 A + P + + +F+LL +I I+ +S + QK + + P + + ++R + Sbjct: 243 AGQQPPLRINAVLISQFRLLLQIKILS-SRGLSQGSLAQKLK--VHPYRVKLGLRTVRQF 299 Query: 302 NKNLVRET---LHKIDHRIHLARKKKYL 326 + + L I+ + ++ L Sbjct: 300 SLLALENAYLGLVNIEKALKTTQRDPRL 327 >gi|190150202|ref|YP_001968727.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307256927|ref|ZP_07538705.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263540|ref|ZP_07545155.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915333|gb|ACE61585.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306864661|gb|EFM96566.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871183|gb|EFN02912.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 341 Score = 89.3 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 112/313 (35%), Gaps = 18/313 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D LI E + + + D V + ++ + S LF Sbjct: 19 PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDTKWED---LFEAAQSNGLFF 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136 ++II++ + + + E+ + + ++I+ S ++K +I Sbjct: 76 NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C L I + I EA Q+L + G+ +A + LQ L Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ K+++ + + I+A ++GKI A + ++ LL + Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251 Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310 + LLE + N + + + +R Q +++ + + + Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311 Query: 311 HKIDHRIHLARKK 323 ++ +++ Sbjct: 312 QRLAELEKQVKQE 324 >gi|315164898|gb|EFU08915.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1302] Length = 342 Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 126/334 (37%), Gaps = 20/334 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ L K + D F+ + E + + E + F Sbjct: 17 PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++ +EN L+ E+K ++ L + +++ ++ K + RK Sbjct: 75 DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132 Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + P ++ + I +++ +I +A +LL + ELQK Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y LE IT V++++ + + ++ N + G A+ L + L + L Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +L + I+ I + + P + + + +R + + ++ Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLKRLY 309 Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343 ++ + K ++K ++FQ IL + A Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342 >gi|75909675|ref|YP_323971.1| DNA polymerase III subunit delta [Anabaena variabilis ATCC 29413] gi|75703400|gb|ABA23076.1| DNA polymerase III, delta subunit [Anabaena variabilis ATCC 29413] Length = 329 Score = 89.3 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 127/333 (38%), Gaps = 16/333 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D I + + + + F+ + + I N++ + + Sbjct: 2 PIYVYWGEDDFAIAKAVTTLRDRVLDPLWTSFNYTSFPPEDSEAPIQAL-NQVMTPVFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 +++ + N + + VL L + N +++ +K L++ A Sbjct: 61 GGRLVWLMNTNLLQNCPENVLAELTRTLSVIPENSFLLLTCRNKPDERLKSTKLLKQSAT 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +F I + L+ + ++ ++ ++ ++L +G D NE++KL Sbjct: 121 EFREFPLIPPWKTEL--LIQAVNQAAQTVGVKLTPKSAELLAEAVGNDTRLLYNEMEKLR 178 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y ++ I E V ++ +T ++ + A G A+ + + + P ++ Sbjct: 179 LYAEDNNRPIEENTVTRLVRNTTQNSLQ-LAAAIRVGDTAKALTILADLINAAEPELRII 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F+ + ++ E + + I Q E P + LQ+ ++ + + L Sbjct: 238 ATLIGQFRTWLWVKLMVESGERNPQAIAQAAEIG-NPKRIYFLQQEVQSLSLRQLISCLP 296 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + ++ + E +I+ I+ + Q + Sbjct: 297 LLLELEVTVKQGRA-EISILQIKIIELCQLCQR 328 >gi|166711419|ref|ZP_02242626.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 342 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 18 PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K AE + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAVGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L + A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRAAAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + Q ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KTLDLQAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|320162445|ref|YP_004175670.1| DNA polymerase III delta subunit [Anaerolinea thermophila UNI-1] gi|319996299|dbj|BAJ65070.1| DNA polymerase III delta subunit [Anaerolinea thermophila UNI-1] Length = 332 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 113/314 (35%), Gaps = 21/314 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G+D + I+ ++ + +L L+ ++ +N + ++ Sbjct: 7 VYVLHGNDVHAMQAFIHTLREKLGDPAVADLNLTRLDGRTASED--DIFNAAGAMPFLAE 64 Query: 83 KKIILIEN---LSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---------KKNNTLRKI 130 ++++++ + T + + + +++ +I + R Sbjct: 65 RRLVILTHPFTRLTAESARQRFCQRLETLPETTALVLVIEDIIERRSWVHFPPKHWFRAW 124 Query: 131 AEKF-TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 EK V C + + I++ + EA L ++G D +R E++ Sbjct: 125 MEKAGKRVHYHLCTLPDLSAMPAWIQKEARSLGGQFTAEAAAELARHVGNDTQTARQEIE 184 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +Y + + V ++ + +++A +G A L + + Sbjct: 185 KLLTYVNFQRAVELEDVAELTAQGGEADLFAMMDAIAEGNARLA-QNLLHRLLEEEDELS 243 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR-- 307 L +++F+LL + + + + + ++++ R ++ + Sbjct: 244 LFGMIVRQFRLLLLARELLDEGKGVADFLQAGISTSQFVAEKSL--RQARRFSMAQLEEI 301 Query: 308 -ETLHKIDHRIHLA 320 TL+++D + + Sbjct: 302 YRTLYEMDGAVKTS 315 >gi|304316630|ref|YP_003851775.1| DNA polymerase III subunit delta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778132|gb|ADL68691.1| DNA polymerase III, delta subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 330 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 118/283 (41%), Gaps = 14/283 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++FYG ++ LI E + + K + D ++ L+ +E + + + + + S Sbjct: 18 PAYVFYGEERFLIDEAVKKLKNKLLTDGTD---IMNLSIIENVDDKNVI-DSLETLPFMS 73 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAEKFTS 136 ++ILI++ KK+ D IIK+I + I I ++I L K K + Sbjct: 74 DHRLILIKDDEFFKKLNDSTINNIIKHIEDGDTNNCIAFIFGDKIDMRKKLFKTISKVGA 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 ++ + ++ + + K I K + ++ N+G D NE++K SY Sbjct: 134 IVNFEHLKYEEA--VNYVGFFVRKYGKVIKKPVAEYIVKNIGVDLYRLLNEVKKFVSYS- 190 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I VK +I + ++NA + AI + + +A+ +L + Sbjct: 191 NDKEILIDDVKFLISSNISESVFRLVNAIGLKQESTAIYVLNKMIANAENPIGILAMIGR 250 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 +F++L K N+ +++ + +I+++S R Sbjct: 251 QFRILLKAKYFL-KQNLDRKELQSRLGIP-YFSINDIIEQSKR 291 >gi|156934840|ref|YP_001438756.1| DNA polymerase III subunit delta [Cronobacter sakazakii ATCC BAA-894] gi|156533094|gb|ABU77920.1| hypothetical protein ESA_02688 [Cronobacter sakazakii ATCC BAA-894] Length = 343 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 107/305 (35%), Gaps = 11/305 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G+D L+ E + + F +++ + ++ + SLF Sbjct: 18 RAAYLVLGNDPLLLQESQDAIHQQAQAHG---FEEHHRFIIDVSTDWQAIFSLCQAMSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ +L+ + + L ++ + ++I++ N++ K Sbjct: 75 ASRQTLLLALPENGPNAAINEQLATLVSLLHDDLLLIVRGNKLTKAQENAAWITALSDRA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + I+C + L + + A Q+L G+ +A L++LS Sbjct: 135 VQITCQTPEQAQLPRWVANRAKQMNLQLDDAACQLLCYCYEGNLLALAQALERLSL-IWP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + GK A+ + LL ++ Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILQQLRQEGAEPVILLRTLQRE 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L + ++ +N + + + +R ++ E+L + + + + + + Sbjct: 254 LLTLVTLK--RQSANTPLRALFDQHR--VWQNRRVLISEALSRLSDDRLWQAVRLLTQCE 309 Query: 318 HLARK 322 ++ Sbjct: 310 ITLKQ 314 >gi|146296059|ref|YP_001179830.1| DNA polymerase III, delta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409635|gb|ABP66639.1| DNA polymerase III, delta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 334 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 56/345 (16%), Positives = 134/345 (38%), Gaps = 26/345 (7%) Query: 5 ESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 +S + I++ L F +++FYG + LI E + K IS+T + ++ Sbjct: 3 KSKEIIKELNSQLLKKEFKKIYLFYGQEIFLIDE----YTKRISMTIVNGNINNIIRFDG 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIII 116 N + NE+ S S + ++++ +N ++ + +E + N II Sbjct: 59 EDANYNDIVNEMISISFDLQPRVLIFKNFFKYSTTNSNLNLSAIVERLKDFNSDKVYIIF 118 Query: 117 ---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 ++ E K N+L+ IA PD L+ ++ + K IS+ Q + Sbjct: 119 KEYEAKENKLFNSLKSIAFSAEF--TTPSMPD----LIKWVQNIMAKEGKVISENMAQEI 172 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + + D + N LQ L SY + + + + D +I ++++A + + Sbjct: 173 IMHYNKDMMLIYNYLQVLISYLGKKSRPAHEDILKTLTDNPQDHIFQMLDAFATKDVESG 232 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 K +L L+ F++L + ++E + K + E + + Sbjct: 233 FRYLKELYQLKTSVSKILALILRHFKILGMMKELQETNKKQIAKQLGILE---FFVDK-- 287 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 ++ + + ++ + + ++ ++ + ++ + + I Sbjct: 288 YKKQSEAFTLDKIKNIIQRTIEYEYMIKRGQIDDETALEMLLYQI 332 >gi|229006664|ref|ZP_04164298.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock1-4] gi|228754525|gb|EEM03936.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock1-4] Length = 337 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++KI+L+++ L ++K+ L+ LEE + + I++ + K + + Sbjct: 73 ERKILLVKSPLFLISQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I + I + A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT V +++ + + + ++ I A+++ D + LL Sbjct: 193 VGIGGEITTGLVAELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|300772707|ref|ZP_07082577.1| DNA-directed DNA polymerase III delta subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300761010|gb|EFK57836.1| DNA-directed DNA polymerase III delta subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 334 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 114/328 (34%), Gaps = 23/328 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + I + + + ++ F +L + + T N + S Sbjct: 17 PVYLLHGEEPYFIDLISDTIESSVLDDAQKGFDQTILYGKDT--DFITIVNAAKRYPMLS 74 Query: 82 KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSV 137 ++ILI+ K + + L + + +++ + K L K EK V Sbjct: 75 DHQVILIKEAQDLKWKQGEELLLNYVEHLTPSTVLVFNYKYGKFDKRKKLYKAIEKAGEV 134 Query: 138 L-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + Y D + I + SI +A ++ LG D NEL KL Sbjct: 135 VESNKLYED---KVAGWITSYVKDHGWSIHPQAAAMMAEYLGTDLSKVSNELDKLMLNVP 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254 + I ++ I + + E+ A + A + D+F A+ P +L Sbjct: 192 KSTEIGAGDIELNIGISKDFNVFELNTALAKRNALKAYQIVDYFAANPKNNPLVVVLGAM 251 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 F + K H + + S + E + + + + R +N+ + ++ + Sbjct: 252 GGYFTKVLKYHYLPDKSAAAKELGVH----PFFIKE---YEIAARNYNRRKTFDIINHLK 304 Query: 315 HRIHLARKKKYLE----KNIIFQTILYI 338 ++ +I+ + I I Sbjct: 305 EADLKSKGMNVGSNTGTDDILREMIFNI 332 >gi|56751120|ref|YP_171821.1| DNA polymerase III subunit delta [Synechococcus elongatus PCC 6301] gi|56686079|dbj|BAD79301.1| DNA polymerase III delta subunit [Synechococcus elongatus PCC 6301] Length = 332 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 105/292 (35%), Gaps = 16/292 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ F+G D+ + + + + + F+ + E + + + + Sbjct: 2 PVYYFWGEDEFALRQAVEKLRDRSVDPMWASFNSERI-PPEQADGVLVALSLALTPPFGA 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++ I + ++ D + + + +++ S +K L+K+AE Sbjct: 61 GQRFIWLPETPLAQQCSDAVYAELTRTLPQMPETTVLLFSSTGKPNGRLKSTKLLQKVAE 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 I + L + + + +EA L A +G +EL+KL Sbjct: 121 -LKEFSPIPPWRGEA--LEQQVVQVAHEVGVRLDREAVACLAAAVGNQTRQLYSELEKLK 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + +T + V+ ++ T ++ + A QG A+ L +AS P+ + Sbjct: 178 LFQGDRSEPVTARIVQALVSTTTQNSLQ-LAAAIRQGDCDRALSLVSDLIASNEPALRIS 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + +F++ + +++E + I P + + + + +R Sbjct: 237 ATLIGQFRMWLWVKLLQERGERDPQAIATAAGIG-NPKRVHFVLQEVRSLTS 287 >gi|317128291|ref|YP_004094573.1| DNA polymerase III subunit delta [Bacillus cellulosilyticus DSM 2522] gi|315473239|gb|ADU29842.1| DNA polymerase III, delta subunit [Bacillus cellulosilyticus DSM 2522] Length = 342 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 112/272 (41%), Gaps = 16/272 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G+++ ++ + I+ KN F+L + E I E + Sbjct: 18 VYVLTGTEQYILEDTIHLIIKNTLADEEKEFNLSTYDMKEY--PIELAVEEAYTFPFMGG 75 Query: 83 KKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131 K+++++++ +++K LE + ++I+ + ++ + + K+A Sbjct: 76 KRVVIVKDAYFLTSQKVSSKIEHNTKQLEGYLENPAPETVLILLAPYEKLDERKKIVKLA 135 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 +K ++ S + L I + +I A + L+ + +E++KL Sbjct: 136 KKAGEYVSGS--ALEEKDLKLWIMDRARDNNVTIDDLAIEQLVLLTSAKLMILASEIKKL 193 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + + ITE+ V +++ + I ++ ++ +I ++ + + K ++ Sbjct: 194 AIHVGDGGRITEEIVNELVPRSLEQNIFSLVEGVVRREISHSWAIFLDLIKQKEEPLKII 253 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 +++F++L ++ S ++I + + Sbjct: 254 ALMVRQFRILYQVK-QLTLQGYSQKQIAGQLK 284 >gi|271499705|ref|YP_003332730.1| DNA polymerase III subunit delta [Dickeya dadantii Ech586] gi|270343260|gb|ACZ76025.1| DNA polymerase III, delta subunit [Dickeya dadantii Ech586] Length = 343 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 113/307 (36%), Gaps = 13/307 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ +G++ L+ E + + + + FS ++ + ++ + SL Sbjct: 18 RGCYLLFGNEPLLLQESQDHIRAVARQQDFLEHFSFT----IDNNTDWDAIFSTCQALSL 73 Query: 80 FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 F+ ++ ++++ + + L ++ + +++++ N++ K + Sbjct: 74 FAPRQTLLLILPDTGPGAPASEQLVKLTTLLHPDILLMVRGNKLTKAQENSAWFKALSQQ 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + C + L + + + + A Q++ G+ +A L++LS Sbjct: 134 GVYVPCMTPEQEQLPRWVAQRARNMKLELDDAASQLICYCYEGNMLALVQALERLSL-LY 192 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T V+ + D ++A + GK A + LL + Sbjct: 193 PDGKLTLPRVEQAVNDAAHFTPFHWLDALLGGKSKRAWHILQQLRLEDCEPVILLRTVQR 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + LL ++ ++ + + + +R +L ++L+ + +++ + + Sbjct: 253 ELLLLLQLKRRMT--GTPLRTLLDQHK--VWQNRRPLLTQALQRLSLTQLQQAITLLSRL 308 Query: 317 IHLARKK 323 ++ Sbjct: 309 EITLKQN 315 >gi|326799870|ref|YP_004317689.1| DNA polymerase III subunit delta [Sphingobacterium sp. 21] gi|326550634|gb|ADZ79019.1| DNA polymerase III, delta subunit [Sphingobacterium sp. 21] Length = 335 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 111/312 (35%), Gaps = 15/312 (4%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N +++ +G + I +++ + + F+ +L + + T N Sbjct: 11 NKRKLKPIYLLHGEEAYYIDLIVHALENKVLSEAEKGFNQTILYGKDT--DWVTILNTAK 68 Query: 76 STSLFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIA 131 + S ++++I+ K D + ++ ++ + ++ K + K Sbjct: 69 RYPMMSDYQVVIIKEAQNLKWDKADEFFQAYVEKPLTTTVLAFAYKYSKFDKRKKIYKAI 128 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 EK VL + DN L I+E + I +A ++ LG + NEL K+ Sbjct: 129 EKSGVVLESAKIYDN--KLAPWIDEYVKERGMKIHPQAAAMMGEYLGTELSKVANELDKM 186 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249 +D I V++ I + I E+ A + + + D+F A+ P Sbjct: 187 MLNVPKDREIGVTDVQNNIGISKDFNIFELNTALGKKDVLKVNQIIDYFSANPKSNPIPV 246 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 ++ F + K H + + S S K + + P + + R + + Sbjct: 247 VMGSLYGYFSKILKFHYLPDKSQQSAAKEL-----GVHPFFVKDYELAARNYPIMKLFHI 301 Query: 310 LHKIDHRIHLAR 321 + + ++ Sbjct: 302 IGYLREYDLKSK 313 >gi|57867049|ref|YP_188730.1| DNA polymerase III subunit delta [Staphylococcus epidermidis RP62A] gi|251811003|ref|ZP_04825476.1| DNA polymerase III subunit delta [Staphylococcus epidermidis BCM-HMP0060] gi|282875985|ref|ZP_06284852.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis SK135] gi|293366453|ref|ZP_06613130.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|57637707|gb|AAW54495.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|251805513|gb|EES58170.1| DNA polymerase III subunit delta [Staphylococcus epidermidis BCM-HMP0060] gi|281295010|gb|EFA87537.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis SK135] gi|291319222|gb|EFE59591.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329735229|gb|EGG71521.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis VCU045] Length = 324 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 119/343 (34%), Gaps = 42/343 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ +F YG L+ + + + D F+ V N E E + Sbjct: 1 MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124 FS KK I+++N + EK D L + + K ++II + ++ + Sbjct: 59 FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118 Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 L+KI + + L I+ +L K I ++A ++ + Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + EL+KL + E +I ++ + II + + + +G AI L Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295 + + K LL ++L + I+ + K + P + + Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + ++ + + ++ I+ IL + Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324 >gi|315641041|ref|ZP_07896124.1| DNA-directed DNA polymerase III delta subunit [Enterococcus italicus DSM 15952] gi|315483210|gb|EFU73723.1| DNA-directed DNA polymerase III delta subunit [Enterococcus italicus DSM 15952] Length = 344 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 133/341 (39%), Gaps = 21/341 (6%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTF 70 K+ + V+ GS+ L ++ F + ++IT +D F+ + L + + Sbjct: 8 KTIATIETLQPVYCIQGSESYLQQKVKEAFLQRMAITENDLNFTQIDLELFTVDQ----L 63 Query: 71 WNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEI 121 +E + F ++++ N L++EKK LD L E + + +++ + Sbjct: 64 IDEAETVPFFGDQRLLFAMNPYFLTSEKKTNGPDHNLDRLIEYLNSPLQTTVLVFFAPYD 123 Query: 122 KKNNTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + RK K + I P + + ++ E L I +A + L + Sbjct: 124 KFDE--RKKITKRLKKQAVLIDTKPLAENEVKRMVHEKLKQANVDIEPQALEQFLRSTEM 181 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D + +EL+KL + IT + V+ +I T + E+ ++GK A+ Sbjct: 182 DLSKAMHELEKLILFASATGRITGKAVEQLIPKTLENNVFELTEMILKGKADGALEGYRE 241 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 L + + + + +L ++ I+ E + I + + P + + + R Sbjct: 242 LLLQGEETIKINAILIGQIRLYLQVAILME-QGMQQGAIADQVKA--HPYRVKLAMQQSR 298 Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 ++++ + ++ + + + ++ + IL A Sbjct: 299 KYSRSELEGLFDQLVENDYKMKTGQMTKEYLFELFILQTAN 339 >gi|260902408|ref|ZP_05910803.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ4037] gi|308109410|gb|EFO46950.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ4037] Length = 302 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 112/288 (38%), Gaps = 13/288 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDTSLDWNQVYDCFQALSLFSS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 +++I +E + L+ + + +++I ++ K K K + Sbjct: 76 RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +SC + L ++ +++ Q+L G+ A L+KL+ D Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + I+A + GK A + A + + L+ ++F Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 L +H ++ + +S ++ +K + KR + +L + + + Sbjct: 254 NQLLSMH--QDLTQMSISQVFEKYR--VWQNKRPLYNAALMRLSASRI 297 >gi|237749490|ref|ZP_04579970.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] gi|229380852|gb|EEO30943.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] Length = 336 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 120/330 (36%), Gaps = 23/330 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + L E ++ + ++ + N+ SLF Sbjct: 18 PLYILTGDEHLLALEAADRIRHAARTRDFTEREVLTVERSF---KWGQLQATNNAMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTS 136 KK+I I K+ L+E + ++I +I ++ + + +K Sbjct: 75 DKKLIELRIPTGRPGKEGSTALQEYVAGLNPDNITLITLPKLDWTTQKSAWVSALQKHGI 134 Query: 137 VLAISCYPDNKIHLMDL---IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + I L L I L ++SI +E L+ + G+ +A+ E+QKL+ Sbjct: 135 YIDVP-----TIDLSRLGNWISSRLAKQKQSIDREGIDFLVNRVEGNLLAAHQEIQKLAL 189 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + ++ + V + + + ++ A + G I + + P +L Sbjct: 190 -LFPEGKLSFEQVCSSVLNVARYDVFKLTEAMLGGNRTRFIKMVEGLKGEGEPLPLILWT 248 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH-- 311 + + L K + E +F + + + + +Q ++ +KN +++ L Sbjct: 249 VTDEIRTLLKCKMALE-EGQAFASVSKSLR--LRGPRERFIQSTVNRLDKNNLQKALQQT 305 Query: 312 -KIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 +ID I R ++ T L ++ Sbjct: 306 AQIDKIIKGLRSDSMMDDAWDALTQLGLSI 335 >gi|189485372|ref|YP_001956313.1| DNA polymerase III delta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287331|dbj|BAG13852.1| DNA polymerase III delta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 339 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 134/348 (38%), Gaps = 21/348 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVL 58 M ++ H F + + S V++ G + I +N+ +K + D F Sbjct: 1 MNILKMHDFNKLISLQKISS--VYLLAGEESYFINMCLNKIEKFTATDDLNRDVFYASES 58 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIK 117 +A +I N + + S+ ++++++ ++ K + + L + + I +I+ Sbjct: 59 SADDI-------LNALQTLPFLSEIRVVIVKGVNKMKAIDAERLTDYLSNTIETSCLILL 111 Query: 118 SNEIKKNNTLRKIAE------KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 + K T+ K E + ++++C + + + I+ K +S + Sbjct: 112 YFDNYKKETVAKRREFINKCIASKNCVSVNCRKQYENEVKEFIKNEFAQKGKEVSYDVIS 171 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKI 230 ++ G D + NE++KLS + ++ IT++ ++ I T I + + + Sbjct: 172 RIIEENGNDLLNISNEIEKLSLFAGKNKKDITQEDLEKISGYTKETGIYALSSEIEARDL 231 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + + + L + +L + + + E +S +I + + Sbjct: 232 KKTMFVLEKLLNEREEPVIILSAISSVVRKMLNAKSMIEEQGLSTAEIASALRIHDFYAE 291 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 +L+ ++ + ++E+L I + + + +TIL I Sbjct: 292 T--FFTNLKKYSTDTLKESLKTILKTDTAIKTGSNDAASALEKTILSI 337 >gi|257063738|ref|YP_003143410.1| DNA polymerase III, delta subunit [Slackia heliotrinireducens DSM 20476] gi|256791391|gb|ACV22061.1| DNA polymerase III, delta subunit [Slackia heliotrinireducens DSM 20476] Length = 327 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 40/320 (12%), Positives = 101/320 (31%), Gaps = 16/320 (5%) Query: 22 FVFIFYGSD---KGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINS 76 ++ G D + + + + + D F + ++ N+ Sbjct: 9 PAYLIVGEDELKRNTVLKRLRSRVAALGDIDFNSDYFEGPNVTGEDV-------VTSCNT 61 Query: 77 TSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 S +++++++ +K + + + + ++ + + ++ KN L K K Sbjct: 62 VPFASDVRLVVVKSGEGLKKAAATAIADYLKEPCTTTVLAVVATKMAKNTALYKAMAKVG 121 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I C P K L D + L ++ +A L+ +G + + ELQK++ Sbjct: 122 RQAVIDCSPMTKKELPDKVRGMALTHGFGMNLDAASRLVDLVGENTVRIDAELQKIALAH 181 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + V+ ++ T + +A + + + + + LL + Sbjct: 182 TGKQPVGVSEVEALVARTAEAKPWDFSDAFGARNVNQMLAVWNRLDSG--SVFVLLGRCV 239 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + L + + S + + RN + R W +R L Sbjct: 240 TVLRELLTCKALAKRGQTSQQALAAALGNVPTWKVRNHQAWA-RQWTAEELRHALSAARD 298 Query: 316 RIHLARKKKYLEKNIIFQTI 335 + E + + Sbjct: 299 CERAMKSGSNPEDAFLKWVL 318 >gi|228999116|ref|ZP_04158698.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock3-17] gi|228760733|gb|EEM09697.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock3-17] Length = 337 Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++KI+L+++ L ++K+ L+ LEE + + I++ + K + + Sbjct: 73 ERKILLVKSPLFLISQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + I + I + A +LL +G + E+ KL+ Y Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT V +++ + + + ++ I A+++ D + LL Sbjct: 193 VGIGGEITTGLVVELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+LL + +KE + + + + P + + + ++ +++ + ++ Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309 Query: 315 HRIHLARKKKYLEKNIIFQTIL 336 + + K ++K ++ + L Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330 >gi|172036586|ref|YP_001803087.1| DNA polymerase III subunit delta [Cyanothece sp. ATCC 51142] gi|171698040|gb|ACB51021.1| putative DNA polymerase III, delta subunit [Cyanothece sp. ATCC 51142] Length = 330 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 126/315 (40%), Gaps = 18/315 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 L+ ++ F+G D I + + + +I F+ + + I + Sbjct: 3 LTMGIYFFWGEDDFAIAQTVQTLRNSILDPNWIQFNYHQIAGEDPNSTIDALNQAMT--P 60 Query: 79 LFS-KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIA 131 +F +++ + N S + +L L+ I+ + ++ +++ K + L+ K+ Sbjct: 61 VFGMGGRLVWVVNTSICQQCSEDILTQLQRILPAIPDSSHLLFTTSK-KPDKRLKSTKLI 119 Query: 132 EKFTSVLA---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 E++ V I + ++ L+ +++ ++ A ++L +++G + NEL Sbjct: 120 EQYAEVREYSPIPPWKTDE--LIHKVKQVAQEIGVKLTPNAVKLLGSSVGNNSRQLWNEL 177 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KL Y ++ ++ + + + + ++ A +G A+ L D L+ P+ Sbjct: 178 EKLQLYAQQENKPLDETIVATLVNANAQNSLQLAEAICKGNQAEALQLIDELLSRNEPAL 237 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + +F+ I + E + I + + P + L++ L+ + + Sbjct: 238 RIVATLVGQFRTWTIIQLQLEAGETDNKIIAKAADIP-NPKRLYFLRKELQGISSQSLLA 296 Query: 309 TLHKIDHRIHLARKK 323 TL + R K Sbjct: 297 TLPILLD--LETRLK 309 >gi|325917116|ref|ZP_08179349.1| DNA polymerase III, delta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536692|gb|EGD08455.1| DNA polymerase III, delta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 342 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + + E + + + + E + + N+ SLFS Sbjct: 18 PAYLIAGPETLRVLEAADAVRGRARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + +++I +N+ K + K AE + Sbjct: 76 PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAIGRIGT 134 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ + L D IE L A Q L + G+ +A+ E+ KL+ + Sbjct: 135 IALAWAIKPHELSDWIERRLRARGLRADAAAVQRLAERVEGNLLAAAQEIDKLALLA-DG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + + T G+ I + A AL+ +++ Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + ++ + +L+ + Sbjct: 254 LRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297 >gi|149911112|ref|ZP_01899739.1| DNA polymerase III subunit delta [Moritella sp. PE36] gi|149805862|gb|EDM65851.1| DNA polymerase III subunit delta [Moritella sp. PE36] Length = 345 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 109/307 (35%), Gaps = 18/307 (5%) Query: 22 FVFIFYGSDKGLIFELINQF---KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 ++ +G + L E I+Q K + H F L + +N S S Sbjct: 18 PCYLIFGEEPLLKMEAIDQIKAAAKKVGFDEHHKFHAEPL------MDWPAVFNTCQSMS 71 Query: 79 LFSKKKII-LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TS 136 LFS ++ + LI K+ + L ++ + I+I+ + K K ++ + Sbjct: 72 LFSSRQTVELIFEKRPAKEDISQLNDVFKLLNPDLILILSGPYLTKAQQNAKWFTQYFKN 131 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 L I + + L + +L + G+ +A++ E+ KLS Sbjct: 132 ALYIPVGHPEGRFFANWMRNRLKRANLEPQADVITLLCRSFEGNLLAAQQEIDKLSL-LY 190 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ++ ++ I ++++A + GK+ + A + + + Sbjct: 191 PGQTLSLAQLQQSITQHSHFTSFQLVDALLAGKVNRGQRILQQLQAEGVDPIVINWALNK 250 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313 + L + + + +S ++K + ++ I+ L + + + + L + Sbjct: 251 EINQL-YHYSLMQQQGLSVIDEMKKQR--LWAGRQQIINACLSRLSLSKIEQMLILCSSV 307 Query: 314 DHRIHLA 320 D I + Sbjct: 308 DSAIKTS 314 >gi|241889749|ref|ZP_04777047.1| DNA polymerase III, delta subunit [Gemella haemolysans ATCC 10379] gi|241863371|gb|EER67755.1| DNA polymerase III, delta subunit [Gemella haemolysans ATCC 10379] Length = 326 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 121/299 (40%), Gaps = 18/299 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + I + K D F+ + +N E + + E S+ LF Sbjct: 3 NVYVIYGENFEAINDYEKSIAKKYLKDL-DEFNYIKINMHE--NTLESLVYECRSSGLFG 59 Query: 82 KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +K+++ EN L+ KK+ +D L + ++I+K +E K ++ +K+ + Sbjct: 60 NEKVVVAENCNFLLAKPKKIKVEHNVDTLISYLDNISEEVVLILKISE-KIDSR-KKLIK 117 Query: 133 KFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K V + + + ++ + I +++ IS++ + L+ D + EL+KL Sbjct: 118 KIKEVGEVKEFSNFDEKEIASYIVKTVAEANLKISRDDAEFLVNYTRLDFANIKKELEKL 177 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 YC E +I + ++ + + + + N ++ + + K LL Sbjct: 178 LLYCEEKKVIAREDIELLATRSLEYDVFSLTNELFGKNYSKLRVVYNSLVLKKEEPIFLL 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +K N + + E + P + + + +R ++ + + +TL Sbjct: 238 SLISG---QLRIYYKVKVLLNEHYSQKDIARELGVHPYRVQLAAQGIRNYSVDKIMKTL 293 >gi|261212001|ref|ZP_05926287.1| DNA polymerase III delta subunit [Vibrio sp. RC341] gi|260838609|gb|EEX65260.1| DNA polymerase III delta subunit [Vibrio sp. RC341] Length = 342 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 110/304 (36%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ +G++ LI E +K F + + + S+ ++ + SLF Sbjct: 17 YPIYLVFGNEPLLIQEAKTAIEKAAQTQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++I IE + L + + + I+++ ++ K + Sbjct: 74 SSRQLIEIEIPESGINAQTAKELSSLSGQLHQDIILLVIGPKLTKAQENAAWLKTLAQQA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C L +++ + EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFLLGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++A ++GK A + + + L+ ++ Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K ++ + + + + +R + +L+ ++ + + Sbjct: 253 LTQLLKWQQERQ-QTATLGHLFDRYR--VWQNRRPLYSAALQRLPMVMLSRLIGLLTQAE 309 Query: 318 HLAR 321 LA+ Sbjct: 310 LLAK 313 >gi|54310012|ref|YP_131032.1| DNA polymerase III subunit delta [Photobacterium profundum SS9] gi|46914451|emb|CAG21230.1| hypothetical DNA polymerase III, delta subunit [Photobacterium profundum SS9] Length = 343 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 107/296 (36%), Gaps = 10/296 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 F+ +G++ + E +Q K+ ++ Q + + N + SLF Sbjct: 17 RQAFLLFGNEPLIKQECADQIKQCAQQAGFHERHAFTIDN---QLDWNEVLNCCQAMSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 S ++II +E K L E+ + +++++ + K K + + Sbjct: 74 SAQQIIELEVPESGLNAKQAKALIEVTNHLNDDTLLLLQGPRLNKKQESAKWFKAFDNNS 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L I C + HL I+ + E+ +L G+ +A LQKL+ Sbjct: 134 LYIPCNTPDTRHLPRFIQARCQQLKLKPDHESVVLLAQWHEGNLLALAQSLQKLTL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++++A + G+ + + + + LL ++ Sbjct: 193 DGELTVPRLQESLSRHNHYTPFQLLDAVLAGQAKRSQRVLRQLQGEGIEATILLRTLQRE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L K+ I ++ I +R + +L + + L ++ Sbjct: 253 LTQLYKMQ-EMGMKGTPLNNIFEQYR--IWQSRREVYIGALHRLPLTTLIQLLQRL 305 >gi|28211662|ref|NP_782606.1| DNA polymerase III subunit delta [Clostridium tetani E88] gi|28204104|gb|AAO36543.1| DNA polymerase III, delta subunit [Clostridium tetani E88] Length = 344 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 119/314 (37%), Gaps = 19/314 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISIT--YHDPF---SLVVLNALEIQKNISTFWNEINSTS 78 +IFYGSD+ +I E I+ K + ++ F + + ++ N N + Sbjct: 20 YIFYGSDEDMIKENISLIKNKLIKDKLINEDFIDLNFAKFDGNTLE-NFDEVINACETLP 78 Query: 79 LFSKKKIILIENLS------TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR-KIA 131 S KKI+LI + + V ++ + N ++++ +K + K+ Sbjct: 79 FMSSKKIVLIYRANFLGKNKKSEGVYSAFKKYLENIPENTVLVLYYIFKEKRERVENKVL 138 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + I L +++ K I+ ++ +NL + E++KL Sbjct: 139 KLNKKCDIIEIKDLKGRDLEKKVKDLFEEKGKKIALVELKLFCSNLPNNMGIIEKEVEKL 198 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y LE IT+Q + D+ I +++ ++ AI + L +L Sbjct: 199 CCYTLERD-ITKQDIYDMFPAKQEDDIFVLVDKMGDKRVKEAIDRFNELLHIGESIFNIL 257 Query: 252 HGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + ++F L+ + +KE + E+I + + ++ +S + + + ++ + Sbjct: 258 YMIERQFNLIYQVSRYVKE--GKTIEEISRIIRLP-NFICTKLVGQS-KKFTETQIKNAM 313 Query: 311 HKIDHRIHLARKKK 324 + + + Sbjct: 314 ERCLETEKVLKSTS 327 >gi|73748002|ref|YP_307241.1| DNA polymerase III delta subunit-related protein [Dehalococcoides sp. CBDB1] gi|73659718|emb|CAI82325.1| DNA polymerase III delta subunit-related protein [Dehalococcoides sp. CBDB1] Length = 344 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 124/344 (36%), Gaps = 42/344 (12%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + ++IF GSD + E + Q K+ + + +L A + + N + + Sbjct: 2 NLLYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFL 59 Query: 81 SKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + +++++ L + K D + + ++ K+ Sbjct: 60 APARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDG 119 Query: 126 TLRKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQI 172 R+ EK +++ + P + +L + + +S A ++ Sbjct: 120 DYREK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARL 178 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L G D A E++KL Y +I E V+ ++ + I +++A + K+ Sbjct: 179 LGRLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKE 237 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMK 290 A F A LL +++ +L+ + +K+ E K++ +E + Sbjct: 238 AQQSLAAFTAGGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL---- 293 Query: 291 RNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331 R +++ N + ++ K+ I R + L +++ Sbjct: 294 RKTASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 336 >gi|225154901|ref|ZP_03723399.1| DNA polymerase III, delta subunit [Opitutaceae bacterium TAV2] gi|224804431|gb|EEG22656.1| DNA polymerase III, delta subunit [Opitutaceae bacterium TAV2] Length = 401 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/312 (13%), Positives = 104/312 (33%), Gaps = 49/312 (15%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNIST 69 + + GSD L+ + ++ D FS V++ E+ I+ Sbjct: 2 SDSQSAKPFVFVCGSDDFLVSRAGKARYEELAKGVDDEFSREVISGFANNGGEVSDAINR 61 Query: 70 FWNEINSTSLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIK 117 F + + S+F ++++ ++ ++++ L++I+ N +++ Sbjct: 62 FRESVQTISMFGGRRVVWFKDVNFLADSVTGRAEGTLRLVEDLQQILGSLNPAEVSVVVS 121 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLAN 176 + + + K EK I + L ++ + + A Q+L+A Sbjct: 122 AAPVDRRRAFPKWCEKTADFTLIGGEGEGASDALAGVVLTEAQALGATFGEGALQMLVAR 181 Query: 177 LGGDRIASRNELQKLSSY-------------------------------CLEDILITEQH 205 +G + E++KL++Y ++I E H Sbjct: 182 IGSNTRLLIEEVRKLATYASSSGETTTAGGGGGMGGVVTDAGGGFGDGSARRPVVIEEAH 241 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V++I + E A G + + + S +L + ++L ++ Sbjct: 242 VEEITPNVAEGDFFETAEAFFAGNLKWTLEALHRHFYAGGHSRPVLSALQNRNRILIQVR 301 Query: 266 IIKECSNISFEK 277 + + ++ Sbjct: 302 ALMDAGDVRAGG 313 >gi|310659109|ref|YP_003936830.1| hypothetical protein CLOST_1805 [Clostridium sticklandii DSM 519] gi|308825887|emb|CBH21925.1| conserved protein of unknown function [Clostridium sticklandii] Length = 353 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 97/273 (35%), Gaps = 36/273 (13%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + I +++ FK + + D F+L V++ I +I S Sbjct: 16 KVYLIYGEEAYRIDSILDYFKNKLEPAFRD-FNLTVIDDKVI--DIDRIIENFESVPFMD 72 Query: 82 KKKIILIENLSTEKKVLDCLEE--------IIIKNICNHIIIIKSNEIKKNNTLRK---- 129 K +I++I++ + K L + + I++ E+ K ++L K Sbjct: 73 KNRIVVIKSSAFFKTGTKGLAKEDEKKLLAYLENPAETTIVLFCPPEVDKRSSLFKQLKK 132 Query: 130 ---IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------G 179 I E L + L IS + + G Sbjct: 133 NHCIFEANKL---------EMNELKLWCKAVLKKSNTIISDLELESFIEKTGYYYKESGK 183 Query: 180 DRIASRNELQKL-SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 + NEL K+ + Y + IT Q + +I I +I T G A++ + Sbjct: 184 NLRDLENELVKISALY-QKQGKITIQDIDLVILQNFENNIFRLIEDTFSGDFKKALIEFN 242 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + S + +L F ++ ++ K HI+K Sbjct: 243 HIIDSGESALMILTMFGKQLSMITKYHILKAKG 275 >gi|326791212|ref|YP_004309033.1| DNA polymerase III subunit delta [Clostridium lentocellum DSM 5427] gi|326541976|gb|ADZ83835.1| DNA polymerase III, delta subunit [Clostridium lentocellum DSM 5427] Length = 319 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 127/319 (39%), Gaps = 17/319 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G D + I + KK + + ++ + E+ +S + +++ F+++ Sbjct: 6 YLLLGEDSWSKGQYIEKVKKEVIASGNEMMNFYEAQDKEVI--VSQVQDAVDTLPFFAEQ 63 Query: 84 KIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+IL++ +K+ + E ++ +++I E+ K N L K + ++ Sbjct: 64 KLILLKETGLFKTGKKEETEKFETLVAHIPDYVVLLIDEKEVDKRNKLYKTIKAKAQIVE 123 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + ++ + + S + + + + D E +KL SY +D Sbjct: 124 FHFPGEEA--VYQFLKNTCKEKRLSSDEMTLRYFIQKMPQDMAYLLGEWEKLISYV-QDG 180 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +IT++ + +I + + E++ + + A+ + + SK +L ++F+ Sbjct: 181 VITKEAINEICIFSLETRVFEMVKKIVNHEGNEALEIYSRMIQSKESPIGILVLIARQFR 240 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ--ESLRIWNKNLVRETLHKIDHRI 317 ++ ++ + +N S K I K + + + + + + + E D I Sbjct: 241 MMYQVKYLL--ANRSPLKEISAETKLPFFVVKEMSEQVQHYQFKQLEDILEACLNTDEAI 298 Query: 318 HLARKKKYLEKNIIFQTIL 336 K +E + + ++ Sbjct: 299 ----KTGKMESSKCVEMLI 313 >gi|253998284|ref|YP_003050347.1| DNA polymerase III subunit delta [Methylovorus sp. SIP3-4] gi|313200357|ref|YP_004039015.1| DNA polymerase III subunit delta [Methylovorus sp. MP688] gi|253984963|gb|ACT49820.1| DNA polymerase III, delta subunit [Methylovorus sp. SIP3-4] gi|312439673|gb|ADQ83779.1| DNA polymerase III, delta subunit [Methylovorus sp. MP688] Length = 342 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 121/333 (36%), Gaps = 17/333 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + E ++ + D + + + + I+ F S SLF+ Sbjct: 18 PIYVLTGDEPLAQRECLDAIRAKARALGFDERTSLTVERNFNWQQIAAFG---QSISLFA 74 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL- 138 ++I+ I + L+ + K + + + II ++ ++ + Sbjct: 75 SQRILELHIPSGKPGTDGGKALQAMAAKPLPDAVTIIILPKLDRDGKNSAWYGALENAAV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++ L I L + Q+ + + L + G+ +A+ E+QKL Sbjct: 135 TLTLQEVEAAQLPQWIARRLAMQQQETDQATLEFLAHQVEGNLLAAHQEIQKLGL-LYPA 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + V+D + + ++ A + G + + + A+++ L Sbjct: 194 GPLAAEAVRDAVLNVSRYDAFQLGEAVLAGDTERTVRILQGLRDEGVQPIAVMNPLLWVL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L ++ E + + +Q+ I ++ + + +L + ++ LHK+ Sbjct: 254 RPLVRVK-EAETRGENLNQAMQQAR--IYGDRQALTRRALARLSLRQLQAALHKLAEIDK 310 Query: 319 LA----RKKKYLEKNIIFQTILYIAQTACKNNN 347 A R+ +LE I + +A+ + + Sbjct: 311 TAKGLIRQDAWLE---ISRLCFGLAKVSSRAAR 340 >gi|210623836|ref|ZP_03294085.1| hypothetical protein CLOHIR_02036 [Clostridium hiranonis DSM 13275] gi|210153331|gb|EEA84337.1| hypothetical protein CLOHIR_02036 [Clostridium hiranonis DSM 13275] Length = 343 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 120/332 (36%), Gaps = 25/332 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG + LI I K ++ + D F+ V++ E+Q + + I + Sbjct: 17 RVYLFYGKEYYLIENSIKMLKSGLNESMLD-FNFDVIDGKEVQLD--QLLSSIETFPFMD 73 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAE 132 ++K++++++ +K D E+ I+ + I +I K ++ K Sbjct: 74 ERKVVIVKDFELFNGNKKNFTDADEKYFIERLDNIPDTTVLAFIVYGDIDKRKSIYKKVN 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-----GDRIAS--R 185 K +V C + + L ++ + + LG D + + Sbjct: 134 KVGTVC--ECKKLDGMDLFKWVKREFSRLDVNAENATIAYFIEQLGYRDKNSDMTLTDVK 191 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ K+ SY +T + V + + +I+ A+ + + Sbjct: 192 NEIFKMGSYAGSGSTLTNEIVDKLSPRKVENNVFRMIDNIGMKNASVAMKIFKDMVFDGE 251 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 P ++ ++F+++ + + N+ ++I +K + ++ + Sbjct: 252 PVLRIMSLISRQFRIILNVK-DMQKENMKIKEIATTLGVQEFVVKNAA--KQGTNFSDDK 308 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 + E ++ I + K + + ++ Sbjct: 309 LTEIMNYILESEYRI-KNGLIGDEAAIEILIG 339 >gi|27468191|ref|NP_764828.1| DNA polymerase III subunit delta [Staphylococcus epidermidis ATCC 12228] gi|27315737|gb|AAO04872.1|AE016748_106 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|329737162|gb|EGG73416.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis VCU028] Length = 324 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 118/343 (34%), Gaps = 42/343 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ +F YG L+ + + + D F+ V N E E + Sbjct: 1 MSNNIFTVYGEVPELVEKKTKEIVNDYLGQKIDDFNYVKYNLYESDLTP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124 FS KK I+++N + EK D L + + K ++II + ++ + Sbjct: 59 FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118 Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 L+KI + + L I+ +L K I ++A ++ + Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + EL+KL + E +I + + II + + + +G AI L Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKDDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295 + + K LL ++L + I+ + K + P + + Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + ++ + + ++ I+ IL + Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324 >gi|289431999|ref|YP_003461872.1| DNA polymerase III subunit delta [Dehalococcoides sp. GT] gi|288945719|gb|ADC73416.1| DNA polymerase III, delta subunit [Dehalococcoides sp. GT] Length = 342 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 123/342 (35%), Gaps = 42/342 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++IF GSD + E + Q K+ + + +L A + + N + + + Sbjct: 2 LYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFLAP 59 Query: 83 KKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 +++++ L + K D + + ++ K+ Sbjct: 60 ARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDGDY 119 Query: 128 RKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 R+ EK +++ + P + +L + + +S A ++L Sbjct: 120 REK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARLLG 178 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 G D A E++KL Y +I E V+ ++ + I +++A + K+ A Sbjct: 179 RLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKEAQ 237 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMKRN 292 F A LL +++ +L+ + +K+ E K++ +E + R Sbjct: 238 QSLAAFTAGGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL----RK 293 Query: 293 ILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331 +++ N + ++ K+ I R + L +++ Sbjct: 294 TASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 334 >gi|319400923|gb|EFV89142.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis FRI909] Length = 324 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 42/343 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ +F YG L+ + + + D F+ V N E E + Sbjct: 1 MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKN----- 124 FS KK I+++N + EK D L + + K ++II + + K + Sbjct: 59 FFSDKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQSKLDERKKL 118 Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 L+KI + + L I+ +L K I ++A ++ + Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + EL+KL + E +I ++ + II + + + +GK AI L Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGKKNKAIQLV 226 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295 + + K LL ++L + I+ + K + P + + Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + ++ + + ++ I+ IL + Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324 >gi|227538078|ref|ZP_03968127.1| DNA polymerase III subunit delta [Sphingobacterium spiritivorum ATCC 33300] gi|227242154|gb|EEI92169.1| DNA polymerase III subunit delta [Sphingobacterium spiritivorum ATCC 33300] Length = 334 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 114/328 (34%), Gaps = 23/328 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + I + + + ++ F +L + + T N + S Sbjct: 17 PVYLLHGEEPYFIDLISDTIESSVLDDAQKGFDQTILYGKDT--DFITIVNAAKRYPMLS 74 Query: 82 KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSV 137 ++ILI+ K + + L + + +++ + K L K EK V Sbjct: 75 DHQVILIKEAQDLKWKQGEELLLNYVEHLTPSTVLVFNYKYGKFDKRKKLYKAIEKAGEV 134 Query: 138 L-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + Y D + I + SI +A ++ LG D NEL KL Sbjct: 135 VESNKLYED---KVAGWITSYVKDRGWSIHPQAAAMMAEYLGTDLSKVSNELDKLMLNVP 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254 + I ++ I + + E+ A + A + D+F A+ P +L Sbjct: 192 KSTEIGAGDIERNIGISKDFNVFELNTALAKRNALKAYQIVDYFAANPKNNPLVVVLGAM 251 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 F + K H + + S + E + + + + R +N+ + ++ + Sbjct: 252 GGYFTKVLKYHYLPDKSAAAKELGVH----PFFIKE---YEIAARNYNRRKTFDIINHLK 304 Query: 315 HRIHLARKKKYLE----KNIIFQTILYI 338 ++ +I+ + I I Sbjct: 305 EADLKSKGMNVGSNTGTDDILREMIFNI 332 >gi|289578092|ref|YP_003476719.1| DNA polymerase III subunit delta [Thermoanaerobacter italicus Ab9] gi|289527805|gb|ADD02157.1| DNA polymerase III, delta subunit [Thermoanaerobacter italicus Ab9] Length = 338 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++FYG ++ L+ + I +FK + + +V+ + ++ ++ + F Sbjct: 16 HNLYLFYGEERYLLLDAIKKFKSKLLKEETYEMNYIVIEKNDPEEYVNAIIESCETLPFF 75 Query: 81 SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKI 130 S+ K++L++N + KK+++ +EE ++II E I K+ Sbjct: 76 SEYKLVLVKNEEDQLSRLNDKSLKKLMNYIEEKTNMPENKTVLIIVGGEKIDLRKKFNKL 135 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK ++ + ++ + K I+K + L+ ++G D A NE+ K Sbjct: 136 VEKIGKIVYFQKLSFEEA--VNYTGYFFVKSGKKITKADAEYLVKSVGTDLYAIVNEIHK 193 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + Y + I + +K+++ I +++A + K A + L + Sbjct: 194 VICYS-DSEKIEMEKMKEVLSINLQQNIFNLVSAIGRKKEKEAYKVLYALLEKGEVPLII 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L +++ +L+ KI E + I ++ L +++ K + Sbjct: 253 LSMIIRQMRLIAKIKT-FEGKFVDKRSIASSLGVPYFVVEE--LTRQSKLFKKEDLERA 308 >gi|297537780|ref|YP_003673549.1| DNA polymerase III subunit delta [Methylotenera sp. 301] gi|297257127|gb|ADI28972.1| DNA polymerase III, delta subunit [Methylotenera sp. 301] Length = 341 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 116/304 (38%), Gaps = 12/304 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + E ++ + +D + + + + I ++ S SLF+ Sbjct: 18 PLYILVGDEPLAQRESLDAIRAAARAQGYDERTTLTVERYFNWQQIQSYG---QSISLFA 74 Query: 82 KKKIILIENLSTEKKVLD---CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 ++++ I N+ + K +D L+ + K I + ++I +++++ + Sbjct: 75 SQRLLEI-NIPSGKPGVDGGKALQALAAKAIPDTCVVIILPKLERDAANSAWFSALEKNA 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + I + +L I L + + S++ + L + G+ +A+ E+QKL Sbjct: 134 ITIQLNEVDAANLPKWIASRLALQGQHTSQQTLEFLAHQVEGNLLAANQEVQKLGL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +++ V++ + + ++ A + G + + + A++ + Sbjct: 193 QGELSDATVREAVLNVSRYDAFQLGEAVLAGDAARTVRILQGLQDEGENAVAVMSPLMWV 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L +I E + + I K+ +++ +L N + L K+ Sbjct: 253 LRPLVRIK-QAEMRGENIMNAMTNAR--IYGEKQALVKRALARLNLKQLEAALQKLADID 309 Query: 318 HLAR 321 A+ Sbjct: 310 KTAK 313 >gi|239637602|ref|ZP_04678574.1| DNA polymerase III, delta subunit [Staphylococcus warneri L37603] gi|239596820|gb|EEQ79345.1| DNA polymerase III, delta subunit [Staphylococcus warneri L37603] Length = 324 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 120/333 (36%), Gaps = 22/333 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + ++ T D F+ + N E + E + Sbjct: 1 MSDNIVTVYGEVADLVEKKSSEIINKYLQTEKDDFNFIKFNLYETEITP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127 FS KK IL++N + EK + D L E + K +++II + N++ + L Sbjct: 59 FFSDKKAILVKNAYVFTGEKVTKELNQNTDQLMEFLEKYDGDNLIIFEVYQNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + + + + + I+ L K I ++A + + G + E Sbjct: 119 TKTLKKNGQLKKVEQMSEEE--IKKWIQSKLNENFKDIKQDALNMFIELTGVNFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L KL + + I + V II + + + + + AI L + K Sbjct: 177 LDKLMLFLGDRPTINKDDVNQIINRSLEQNVFLLTEYIQKRQKNKAIQLVKDLINMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 LL ++L + I+ + K + + P + + +R + Sbjct: 237 IKLLALVTSNYRLYYQCKILSQKGYSGQQIAKTVN-----VHPYRVKLALGQVRHYQLED 291 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + T+ + + ++ I+ IL + Sbjct: 292 LLNTIDSCAETDYKLKSSYMDKQLILELFILSL 324 >gi|259503081|ref|ZP_05745983.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus antri DSM 16041] gi|259168947|gb|EEW53442.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus antri DSM 16041] Length = 340 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 111/279 (39%), Gaps = 16/279 (5%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNIC 110 +E+ S + +++ F +++++++ L+ EK+ L L + + Sbjct: 53 DMEVTPLASALADAVSA-PFFGERRLVVVNKPYFLTNEKRGGKIEHDLAALTKYLQHPEP 111 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 ++ + K + + + E + +S P ++ +E L +I A Sbjct: 112 TTTLVFSAPYEKLDGRKKLVKELKKVAVNVSAAPLDERSARQQVESGLHQDGFTIDDAAL 171 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 + L+ D + KL ++ IT + V++++ + + +++ A ++ Sbjct: 172 ETLVQRTNADYGLMVANVAKLKILAYQNKQITARMVEELVPQSLDDNVFDLVTAVLRRDQ 231 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 ++ L LAS+ + + +F+LL ++ ++ +S I K N+ P + Sbjct: 232 PRSLALYQQLLASQKQPLQINAVLVSQFRLLIQLKVLV-KHGLSQGSIASKL--NVHPYR 288 Query: 291 RNILQESLRIWNKNLVRET---LHKIDHRIHLARKKKYL 326 + ++R ++ + L KI+ + ++ L Sbjct: 289 VKLGLRTVRQFSLERLANAYLGLVKIERTLKTTQRDPEL 327 >gi|218513713|ref|ZP_03510553.1| DNA polymerase III subunit delta [Rhizobium etli 8C-3] Length = 71 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57 MA I+SH+F +QKS +N + +F+ YG D+GL+ E Q + DPFSL Sbjct: 1 MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56 Query: 58 LNALEIQKNISTFWN 72 L+ ++QK+ + Sbjct: 57 LDIADLQKDPGRLVD 71 >gi|317495075|ref|ZP_07953447.1| DNA polymerase III [Gemella moribillum M424] gi|316914847|gb|EFV36321.1| DNA polymerase III [Gemella moribillum M424] Length = 326 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 121/299 (40%), Gaps = 18/299 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YG + + + + +N D F+ V +N + + T E S+ LF Sbjct: 3 NVYVIYGENFEAVNDYEKEITRNYVKEV-DEFNRVKINMND--HTLETLVYECRSSGLFG 59 Query: 82 KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +K+++ EN L+ KK+ +D L + + I+I+K++E K ++ +KI + Sbjct: 60 NEKVVVAENCNFLLAKPKKLKVEHNVDVLTKYLENINDEVILILKNSE-KIDSR-KKIVK 117 Query: 133 KFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + + + + + L+D I + + ISK Q L+ D + EL+KL Sbjct: 118 QLKEIGEVKEFSNFKEHQLIDYIVKQVGELGLEISKADAQFLVDYTQLDLANIKKELEKL 177 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 YC E I+++ ++ + + + + N + + + + LL Sbjct: 178 VLYCGEIGRISKKDIELLCTRSLDYDVFSLTNELFGKNYKKLREVYNSLVLKREEPIFLL 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + +K N + + E I P + + + + ++ + ++ Sbjct: 238 SLISG---QLRLYYKVKVFLNEHYSQKEIAKELGIHPYRVQLAAQMVSHYDLEKIMRSM 293 >gi|303252872|ref|ZP_07339031.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247862|ref|ZP_07529898.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648302|gb|EFL78499.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855664|gb|EFM87831.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 341 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 110/313 (35%), Gaps = 18/313 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D LI E + + + D V + + S LF Sbjct: 19 PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136 ++II++ + + + E+ + + ++I+ S ++K +I Sbjct: 76 NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C L I + I EA Q+L + G+ +A + LQ L Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ K+++ + + I+A ++GKI A + ++ LL + Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251 Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310 + LLE + N + + + +R Q +++ + + + Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311 Query: 311 HKIDHRIHLARKK 323 ++ +++ Sbjct: 312 QRLAELEKQVKQE 324 >gi|307130048|ref|YP_003882064.1| DNA polymerase III, subunit delta [Dickeya dadantii 3937] gi|306527577|gb|ADM97507.1| DNA polymerase III, delta subunit [Dickeya dadantii 3937] Length = 343 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 37/309 (11%), Positives = 112/309 (36%), Gaps = 17/309 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L+ E I + H F+L + + ++ + Sbjct: 18 RGCYLLFGNEPLLLQESQDQIRTIARQQDFLEHFSFTL------DNNTDWDAIFSTCQAL 71 Query: 78 SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134 SLF+ ++ ++++ + + L ++ + +++++ N++ K + Sbjct: 72 SLFASRQTLLLILPDAGPGAPGGEQLVKLSTLLHPDILLMVRGNKLTKAQENSSWFKALS 131 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + C + L + + + A Q++ G+ +A L++LS Sbjct: 132 QQGVYVPCMTPEQEQLPRWVAHRAKNMKLELDDAASQLICYCYEGNLLALVQALERLSL- 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T V+ + D ++A + GK A + + LL Sbjct: 191 LYPDGKLTLPRVEQAVNDAAHFTPFHWLDALLGGKSKRAWHILQQLRLEECEPVILLRTV 250 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ LL ++ ++ + + + +R +L ++L+ + +++ + + Sbjct: 251 QRELLLLLQLKRRMAT--TPLRTLLDQHK--VWQNRRPLLTQALQRLSLTQLQQAITLLS 306 Query: 315 HRIHLARKK 323 ++ Sbjct: 307 RLEITLKQN 315 >gi|262274727|ref|ZP_06052538.1| DNA polymerase III delta subunit [Grimontia hollisae CIP 101886] gi|262221290|gb|EEY72604.1| DNA polymerase III delta subunit [Grimontia hollisae CIP 101886] Length = 340 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 106/304 (34%), Gaps = 10/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + ++ +G++ L E D V++ ++ ++ + SLF Sbjct: 17 YQTYLIFGNEPLLKEESKQAIIDTAQKQGFDEKHRFVVDNQLNWQD---VYDVCQALSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + +++I++ + + L+E+ + ++I+ + K + Sbjct: 74 ASRQVIILTLPDNPLTTSQANALKELQRLLHPDLVLILDGPRLNKKQESATWFTAFQQTG 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L + C + L IE E+ +L G+ +A L KL Sbjct: 134 LYVPCNTPDSRQLPHFIENRCHRLGLHPDHESVMLLAQWHEGNLLALSQSLMKLQL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T +++ + + ++ +A ++GK A+ + A + LL ++ Sbjct: 193 DGELTLLRLQEALSRHNHYTPFQLTDALVEGKAKRAVRILRQLEAEGVEITLLLRVIQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L K+ S + KI + +R ++ +L + + L ++ Sbjct: 253 LVQLCKMQ-EFGASGMGLGKIFDHFR--VWQARRPVMTAALHRLTQPTLMHLLQRLAEIE 309 Query: 318 HLAR 321 + + Sbjct: 310 VMVK 313 >gi|317491128|ref|ZP_07949564.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920675|gb|EFV41998.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 344 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 90/248 (36%), Gaps = 7/248 (2%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E ++ ++ + L+A + + ++ + SLF+ + Sbjct: 21 YLVMGNEPLLLQESLDLIRQQAQQQGFTEYFSFSLDAHT---DWESIFSLSQAMSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + + + L ++ + ++II+ N+ K + + I Sbjct: 78 QIISLTLPENGANAAIGEQLAKLATLLHSDLLLIIRGNKPTKAQENAGWFKTLSQNAAMI 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC + L + + A Q++ G+ +A L++LS D Sbjct: 138 SCQTPEQAQLPRWVATRAKQMNLQLDDAANQLICYCYEGNLLALSQALERLSL-LYPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V++ + D ++A + GK A + M LL ++ L Sbjct: 197 LTLPRVEEAVSDAAHFSPFHWVDAILAGKSKRAWHILQQLRQEDMEPVILLRTVQREVLL 256 Query: 261 LEKIHIIK 268 L + Sbjct: 257 LLTLKSQM 264 >gi|242242864|ref|ZP_04797309.1| DNA polymerase III subunit delta [Staphylococcus epidermidis W23144] gi|242233677|gb|EES35989.1| DNA polymerase III subunit delta [Staphylococcus epidermidis W23144] Length = 324 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 42/343 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S+ +F YG L+ + + + D F+ V N E E + Sbjct: 1 MSNHIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKN----- 124 FS KK I+++N + EK D L + + K ++II + + K + Sbjct: 59 FFSDKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQSKLDERKKL 118 Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 L+KI + + L I+ +L K I ++A ++ + Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + EL+KL + E +I ++ + II + + + +GK AI L Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGKKNKAIQLV 226 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295 + + K LL ++L + I+ + K + P + + Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + ++ + + ++ I+ IL + Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324 >gi|302389460|ref|YP_003825281.1| DNA polymerase III, delta subunit [Thermosediminibacter oceani DSM 16646] gi|302200088|gb|ADL07658.1| DNA polymerase III, delta subunit [Thermosediminibacter oceani DSM 16646] Length = 336 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 115/333 (34%), Gaps = 21/333 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++FYG +K LI E I + K ++ L+ ++ + N + ++ Sbjct: 4 LYLFYGQEKLLIREAIEKIKSKYVPEAYEVVDFQALDGEDVTYDE--IVNVCRVMPMLAE 61 Query: 83 KKIILIENL--------STEKKVLDC--LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++I N EK E + +I + ++ K + K Sbjct: 62 KRVVVIYNAVFLEEGKKKAEKSGSGEARFIEFLENIPPYLCLIFSAEKVDKRKKIYKAI- 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A P + + I+ K + + A + D + E++K Sbjct: 121 -QQKGAAKEFSPLSFKDKVRWIQARSAKYGKPMDQSAAVYMAQFT-ADLYHADGEIKKAV 178 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +Y + I ++ + I+ + I E+I+ +GK+ A+ + + + S +L Sbjct: 179 AYVTDKDEIEKRDLDAIMSKSTEANIFELIDYLAEGKVPAAVKILNELIYSGEKVLVILF 238 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + F L + + + + ++ + ++ ++ + + + L Sbjct: 239 MVSRHFMNL----LAVKANEGLAFQELRNALNMHPFALKKMVLQA-KNFTTEQIINILAL 293 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 +K +E+ + +L K Sbjct: 294 CQQLDIDLKK-GRIEEKKGLEMLLTKIGEMRKG 325 >gi|297544365|ref|YP_003676667.1| DNA polymerase III subunit delta [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842140|gb|ADH60656.1| DNA polymerase III, delta subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 338 Score = 87.3 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++FYG ++ L+ + I +FK + + +V+ + ++ ++ + F Sbjct: 16 HNLYLFYGEERYLLLDAIKKFKSKLLKEETYEMNYIVIEKNDPEEYVNAIIESCETLPFF 75 Query: 81 SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKI 130 S+ K++L++N + KK+++ +EE ++II E I K+ Sbjct: 76 SEYKLVLVKNEEDQLSRLNDKSLKKLMNYIEEKTNMPENKTVLIIVGGEKIDLRKKFNKL 135 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK ++ + ++ + K I+K + L+ ++G D A NE+ K Sbjct: 136 VEKIGKIVYFQRLSFEEA--VNYTGYFFVKSGKKITKADAEYLVKSVGTDLYAIVNEIHK 193 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + Y + I + +K+++ I +++A + K A + L + Sbjct: 194 VICYS-DSEKIEMEKMKEVLSINLQQNIFNLVSAIGRKKEKEAYKVLYALLEKGEVPLII 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L +++ +L+ KI E + I ++ L +++ K + Sbjct: 253 LSMIIRQMRLIAKIKT-FEGKFVDKRSIASSLGVPYFVVEE--LTRQSKLFKKEDLERA 308 >gi|260773269|ref|ZP_05882185.1| DNA polymerase III delta subunit [Vibrio metschnikovii CIP 69.14] gi|260612408|gb|EEX37611.1| DNA polymerase III delta subunit [Vibrio metschnikovii CIP 69.14] Length = 341 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 11/285 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G++ LI E ++ F+ + N + ++ S SLFS+ Sbjct: 19 VYLILGNEPLLIQESRLAIERKAREQG---FTEKYRFNADASLNWNEVYDCCQSMSLFSQ 75 Query: 83 KKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 ++I+ IE + L + + +++I ++ K + ++ Sbjct: 76 RQIVEIEVAENGFNAALGKELASLTATLSPDVLLVIIGGKLAKAQENTAWFKTLSAQACW 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++C L + EA Q+L G+ +A L+KL D Sbjct: 136 VNCLTPELSRLPQFVATRCRALGLKPDNEAIQMLAQWHEGNLLALVQSLEKLVL-LYPDG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T +++ + + I+A ++GK A + A L+ ++ Sbjct: 195 QLTLLRLEESLSRHNQFTAFHWIDALLEGKANRAQRILRQLAAEDTEVIILIRTVQKELF 254 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L ++ E + + + I KR + +L+ + Sbjct: 255 QLLQMRQAIETQ--AIGNVFNQYR--IWQTKRPLYSAALQRLSVP 295 >gi|294788929|ref|ZP_06754169.1| DNA polymerase III, delta subunit [Simonsiella muelleri ATCC 29453] gi|294483031|gb|EFG30718.1| DNA polymerase III, delta subunit [Simonsiella muelleri ATCC 29453] Length = 332 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 7/266 (2%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ +G ++ L E + Q + + + Q + W + S LF Sbjct: 15 RPIYVIHGEEELLKIEALEQIRAAAK---SRGYLKETYLVEQAQFDWQELWAQAASAGLF 71 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K+ I I N K+ + +++ + + ++I ++ K K Sbjct: 72 GDCKLLEIHIPNGKLGKQGSEMMQQFAEHPLTDTSVVIVLPKLDKTQLQSKWFAALAKHA 131 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + L I L I +A + + G+ +A++ E+ KL+ Sbjct: 132 TILEMKAVTMAALPAWIRARLQQHDLKIDADALALFAQRVEGNLLATKQEIDKLALLYPS 191 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I+ + + + + ++ A + G + L A L+ + Sbjct: 192 GYTISLADTEQTVANVARFDVFQLSGAWLGGDVQRVARLLGGLEAEGDEPVLLVWAVAED 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTE 283 ++L ++ + + + + Sbjct: 252 VRMLIRLAAAL-KQGKTVQAVRNELR 276 >gi|229822876|ref|ZP_04448946.1| hypothetical protein GCWU000282_00166 [Catonella morbi ATCC 51271] gi|229787689|gb|EEP23803.1| hypothetical protein GCWU000282_00166 [Catonella morbi ATCC 51271] Length = 340 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 118/281 (41%), Gaps = 18/281 (6%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL----STEKKVLDC-----LEE 103 F + + + + ++ +E ++ S F+ K+++LI+N S+ K +D L Sbjct: 46 FEVSRFDLNDTE--LAAILDEADAFSFFADKRVVLIDNAQILVSSSKVKVDDQDQKRLLA 103 Query: 104 IIIKNICNHIII--IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161 + ++I SN++ K L K + + ++ + + ++ L Sbjct: 104 YLADPNPASLLIWICDSNQVDKRKKLTKAFQAQAKWVDVAPL--DAKGMGAYLQAYLKES 161 Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 IS+E + L + D + EL KL+ Y + IT + +KD++ + + + Sbjct: 162 SLQISREGLEELRMRVNDDLTLAMAELHKLAQYSNQGKPITLEVIKDLVPRSLETDVFSL 221 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281 A ++ K+ A+ + L +K AL + +F+LL ++ ++ + +++ Sbjct: 222 SQAVLKRKLSQAVQIYQDLLLAKHEPVALHALLVSQFRLLIQVKLL---GHQGYQQAEIA 278 Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + P + + E++R + + + H + ++ Sbjct: 279 QQLGVHPYRVKLALETVRRLDLRQLYDFYHALAEADFQLKQ 319 >gi|259047455|ref|ZP_05737856.1| DNA polymerase III, delta subunit [Granulicatella adiacens ATCC 49175] gi|259035646|gb|EEW36901.1| DNA polymerase III, delta subunit [Granulicatella adiacens ATCC 49175] Length = 339 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 18/312 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + V++ G + L F + I ++ N E+ I T + S F Sbjct: 16 NLVYLVQGKEPYLQELARKVFLETIVAPEDQDLNVGRFNMEEVS--IQTAIQDAESVPFF 73 Query: 81 SKKKIILIENLS-----TEKKVLD----CLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129 +++++L++N S EKK +D L+ + + + +++ + ++ + + K Sbjct: 74 GERRLVLVDNPSFFTGEKEKKSMDHQLERLQAYLENPMDSSVMVFFAPYDKLDQRKKIVK 133 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K + + + + I +SL Q SI +EA + LL S EL Sbjct: 134 QLKK--VAVLLDASELTERDVKQYIRDSLRNHQYSIQEEALETLLVKTQYSLTNSMKELD 191 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL ++ +I + V+ ++ T I E+ + ++ + A+ + L K Sbjct: 192 KLMIASIDTKMIPLELVESLVAKTLEQNIFELGESILKKEGVKALQIYHDMLLQKEDPLK 251 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + L +F+LL ++ +K E IQKT + P + I + R + L+ + Sbjct: 252 MNAILLGQFRLLLQVSYLKREGYQEPE--IQKTL-GVHPYRVKIALQQSRRFGLPLLEKA 308 Query: 310 LHKIDHRIHLAR 321 ++ + + Sbjct: 309 FMQLVDTEYALK 320 >gi|147668696|ref|YP_001213514.1| DNA polymerase III, delta subunit [Dehalococcoides sp. BAV1] gi|146269644|gb|ABQ16636.1| DNA polymerase III, delta subunit [Dehalococcoides sp. BAV1] Length = 342 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 51/342 (14%), Positives = 124/342 (36%), Gaps = 42/342 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++IF GSD + E + Q K+ + + +L A + + N + + + Sbjct: 2 LYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFLAP 59 Query: 83 KKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 +++++ L + K D + + ++ K+ Sbjct: 60 ARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDGDY 119 Query: 128 RKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 R+ EK +++ + P + +L + + +S A ++L Sbjct: 120 REK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARLLG 178 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 G D A E++KL Y +I E V+ ++ + I +++A + K+ A Sbjct: 179 RLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKEAQ 237 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMKRN 292 F ++ LL +++ +L+ + +K+ E K++ +E + R Sbjct: 238 QSLAAFTSAGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL----RK 293 Query: 293 ILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331 +++ N + ++ K+ I R + L +++ Sbjct: 294 TASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 334 >gi|46143864|ref|ZP_00133843.2| COG1466: DNA polymerase III, delta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208350|ref|YP_001053575.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae L20] gi|126097142|gb|ABN73970.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 341 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 110/313 (35%), Gaps = 18/313 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D LI E + + + D V + + S LF Sbjct: 19 PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136 ++II++ + + + E+ + + ++I+ S ++K +I Sbjct: 76 NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---GAQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C L I + I EA Q+L + G+ +A + LQ L Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ K+++ + + I+A ++GKI A + ++ LL + Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251 Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310 + LLE + N + + + +R Q +++ + + + Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311 Query: 311 HKIDHRIHLARKK 323 ++ +++ Sbjct: 312 QRLAELEKQVKQE 324 >gi|228476070|ref|ZP_04060778.1| DNA polymerase III, delta subunit [Staphylococcus hominis SK119] gi|314936293|ref|ZP_07843640.1| DNA polymerase III, delta subunit [Staphylococcus hominis subsp. hominis C80] gi|228269893|gb|EEK11373.1| DNA polymerase III, delta subunit [Staphylococcus hominis SK119] gi|313654912|gb|EFS18657.1| DNA polymerase III, delta subunit [Staphylococcus hominis subsp. hominis C80] Length = 324 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 120/329 (36%), Gaps = 14/329 (4%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +++ + YG L+ + N+ ++ D F+ V N + N E + Sbjct: 1 MANNIMAIYGEVPELVEKKSNEIVESYLNEKKDDFNYVKYNLYDTSFN--QIMEEALTMP 58 Query: 79 LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 S+KK I+++N + EK D + E + K + II + + K + + Sbjct: 59 FISEKKAIVVKNAFIFTGEKVSKDIQPNNEQVNEFLEKYDGENFIIFEVYQNKLDERKKI 118 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + ++ + I+ L K I ++A + + G + EL+ Sbjct: 119 TKTLKKTSKLTKVEQMSEQEIKKWIKNKLHENFKDIKQDALDLFIELTGINFNIVSQELE 178 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ + E I ++ V++II + + + +G+ Y AI L + K Sbjct: 179 KIILFLGERPTINKKDVEEIINRSLEQNVFLLTEYIQKGEKYKAIQLIKDLIVMKEEPIK 238 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 LL + L I S ++I + N+ P + + ++ + + Sbjct: 239 LLALITSNY-RLYYQCKILSRKGYSGQQIAKTI--NVHPYRVKLALNQVKHYQLTHLLNI 295 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + + ++ I+ IL + Sbjct: 296 IDQCAETDYKLKSSYMDKQLILELFILSL 324 >gi|56477922|ref|YP_159511.1| DNA polymerase III subunit delta [Aromatoleum aromaticum EbN1] gi|56313965|emb|CAI08610.1| DNA polymerase III, delta subunit [Aromatoleum aromaticum EbN1] Length = 335 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 47/327 (14%), Positives = 114/327 (34%), Gaps = 13/327 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G++ L+ E + + D +V+ + + SLF Sbjct: 18 PLYLLHGNEPLLVLEAADLVRAAARRQGFDERETLVVGQGF---RWESLSAAAGNLSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 K+I I + D L+ + +I E+ + + + Sbjct: 75 GSKLIDLRIPGGKPGRDGGDALQRYARSLPSGIVTLITLPEVDWATRKTAWFTALSQLGV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L + I L +++ S EA + ++ G+ +A+ E+ KL + Sbjct: 135 TVELNAPERERLGEWIAVRLARQKQTASPEALAFIAEHVEGNLLAAHQEILKLGL-LHAE 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + V++ + + I ++ +A ++G L + +L + Sbjct: 194 GSLSLEDVQNAVLNVARYDIAKLRDALVEGDPVRCTRLLEGLQGEGAAPPLVLWALANEI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 ++L K+ K + K E+ ++ L +L +R + H Sbjct: 254 RMLAKLCAGKTAG--QPLATLFKAERIFDERRKYALSSALGRVRTGTLRAA---LLHAAK 308 Query: 319 LARKKKYLEKNIIFQTILYIA-QTACK 344 + R K L ++ L +A + A + Sbjct: 309 IDRIIKGLAPGDVWDEFLQLAMRLARR 335 >gi|89074969|ref|ZP_01161414.1| DNA polymerase III subunit delta [Photobacterium sp. SKA34] gi|89049208|gb|EAR54772.1| DNA polymerase III subunit delta [Photobacterium sp. SKA34] Length = 341 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L E I Q + F++ + Q + + + + Sbjct: 17 RQTYLLFGNEPLLKQECGDNIKQLAQQQGFLERHRFTI------DNQLDWNQVLDCCQAM 70 Query: 78 SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLFS ++II +E L E++ + ++++ + K K + Sbjct: 71 SLFSAQQIIELEFPETGLNANQAKALLEVVAHLNPDILLLLTGPYLNKKQEATKWFKALD 130 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L + C + + I+ E+ Q+L G+ +A L KL Sbjct: 131 GLGLYVPCNTPDAKQMPRFIQTRCRNLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T +++ + + ++++A + G+ + + + + LL Sbjct: 190 LYPDGELTIIRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGIEATILLRTL 249 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ L K+ I ++ + +R I +L + + + + ++ Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREIYVGALHRLPLSRLVKIIRQLT 306 Query: 315 HRIHLAR 321 + Sbjct: 307 QLEIQVK 313 >gi|325266088|ref|ZP_08132774.1| DNA-directed DNA polymerase III delta subunit [Kingella denitrificans ATCC 33394] gi|324982726|gb|EGC18352.1| DNA-directed DNA polymerase III delta subunit [Kingella denitrificans ATCC 33394] Length = 335 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 91/263 (34%), Gaps = 6/263 (2%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G ++ L E ++ + + ++ + N E S LFS++ Sbjct: 18 YLIHGDEELLRIEAVDMLRAAGQQQGYRQRTVYTVEGSHFDWNA--VLAETQSMGLFSEQ 75 Query: 84 KI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 K I I + K D L E+ + ++++ ++ K K + Sbjct: 76 KWLEIHIPSGKPGKNGGDALCELAERLPDAMVLVLVLPKLDKAQQQSKWFGAFSRLGAVV 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 P L I E L + I +A + + G+ +A++ E+ KLS L Sbjct: 136 EAQPVTGHALPAWIRERLRQHRLDIESDALTLFAERVEGNLLAAKQEIDKLSLLYEAGHL 195 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + ++ I + ++ +A + G + L D A +L + + Sbjct: 196 LQTADIEQAIAQVARFDVFQLSSAWMAGDMARVARLLDGLQAEGDEPVLMLWSVAEDIRT 255 Query: 261 LEKIHIIKECSNISFEKIIQKTE 283 + ++ + ++ + Sbjct: 256 MIRLAAAL-RQGKTVTQVRNELR 277 >gi|165976295|ref|YP_001651888.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876396|gb|ABY69444.1| DNA polymerase III delta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 341 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 109/313 (34%), Gaps = 18/313 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D LI E + + D V + + S LF Sbjct: 19 PFYLLTGNDLLLINESKAHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136 ++II++ + + + E+ + + ++I+ S ++K +I Sbjct: 76 NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C L I + I EA Q+L + G+ +A + LQ L Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ K+++ + + I+A ++GKI A + ++ LL + Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251 Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310 + LLE + N + + + +R Q +++ + + + Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311 Query: 311 HKIDHRIHLARKK 323 ++ +++ Sbjct: 312 QRLAELEKQVKQE 324 >gi|300690444|ref|YP_003751439.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum PSI07] gi|299077504|emb|CBJ50130.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum PSI07] Length = 358 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E ++ ++ FS + +E + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + I ++ + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTITLVTLPRLDFATAKSAWFTALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPDLEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|78484826|ref|YP_390751.1| DNA polymerase III, delta subunit [Thiomicrospira crunogena XCL-2] gi|78363112|gb|ABB41077.1| DNA polymerase III, delta subunit [Thiomicrospira crunogena XCL-2] Length = 338 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 42/340 (12%), Positives = 115/340 (33%), Gaps = 29/340 (8%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I + F+++ F + + YG + + ++ + + + ++A Sbjct: 2 IMAPAFLKQLQNPHFEIKPITLIYGEEPLYVRRALDGLRGLLKSQEYFQRDRYEVDASFK 61 Query: 64 QKNISTFWNEINSTSLFSKKKIILI-----ENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + E + +LF+ ++II + + + ++I Sbjct: 62 WAD---LKMETQAGTLFADRRIIELDIPKGTPGKEGGAFIQEWANAMHDQPPEICLVITC 118 Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 ++ K + + P I L+ + S+ +EA +L + Sbjct: 119 EKLDSRQLKSKWVQAIEAHGWVVQSKPIEGIGLLKWCQNRAQEAGLSLDEEAAGLLSERV 178 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ E++KL+ +T Q++ D + D + + A + G+ A+ + Sbjct: 179 EGNLLAADQEMEKLALLFPAGSALTAQNIIDNVADQAHYQLFALSTAMLFGRTQYALQIL 238 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 + + +L ++ + L +I+ ++ + + + Sbjct: 239 HRLQQEGLEAPIVLWLLSKELRQLI---------SIAQKQQMLSL---------PQVYKQ 280 Query: 298 LRIWNKNLVR--ETLHKIDHRIHLARKKKYLEKNIIFQTI 335 LRIW+ L + D + L+ ++ + + Sbjct: 281 LRIWSSKQAEFSAALQRHDLAYWQSLLNVALQVDLTIKGL 320 >gi|330445212|ref|ZP_08308864.1| DNA polymerase III, delta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489403|dbj|GAA03361.1| DNA polymerase III, delta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 341 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L E I Q + F++ + Q + + + + Sbjct: 17 RQAYLLFGNEPLLKQECGDSIKQLAQQQGFLERHHFTI------DNQLDWNLVLDCCQAM 70 Query: 78 SLFSKKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLFS ++II + + L E+I + ++++ + K K + Sbjct: 71 SLFSAQQIIELDVPDTGLNANQAKALLEVIEHLNPDILLVLTGPYLNKKQEATKWFKALD 130 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ L + C + + I+ + E+ Q+L G+ +A L KL Sbjct: 131 AIGLYVPCNTPDAKQMPRFIQARCRVLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T +++ + + ++++A + G+ + + + + LL Sbjct: 190 LYPDGELTIVRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGVEATILLRTL 249 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ L K+ I ++ + +R + +L + + ++ Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREMYIGALHRLPLTRLVGIIRQLT 306 Query: 315 HRIHLAR 321 + Sbjct: 307 QLELQVK 313 >gi|284929010|ref|YP_003421532.1| DNA polymerase III subunit delta [cyanobacterium UCYN-A] gi|284809469|gb|ADB95174.1| DNA polymerase III, delta subunit [cyanobacterium UCYN-A] Length = 326 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 110/296 (37%), Gaps = 14/296 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ F+G D I + I + +K + F+ ++ + N++ + L + Sbjct: 3 IYFFWGEDNFRIIQTIQKLRKKVINPEWIQFNYHKIHEENTYSILEAL-NQVMTPVLGTG 61 Query: 83 KKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEK 133 +K+I +E S + +E I + ++ S++ +K K A+ Sbjct: 62 EKLIWLEGSSILQQCSDDIFTKIEPFIAAIPNDSNFVLTSSKRPNKKLKSTKLFEKYADM 121 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 L + D L+ ++ ++S A +L+ ++G D NEL+KLS Sbjct: 122 REFSLILPWKIDE---LITKAQQFSEEIGVNLSSSALNLLVESVGNDTRLLWNELEKLSL 178 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y E + I + ++ A QG A+ + L+ +L Sbjct: 179 YNYEKEKPVSKDTVSSIVNISNYSSLQLAKAISQGNKEKALEITIKLLSYNEHPLKILTT 238 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + +F++ I + E + +I K + P + L++ ++ + E Sbjct: 239 LVGQFRIWTIIKLKIET-GENDNTVIAKAAEVSNPNRLFFLRKEIKNIKSEDLLEA 293 >gi|17230936|ref|NP_487484.1| DNA polymerase III subunit delta [Nostoc sp. PCC 7120] gi|17132577|dbj|BAB75143.1| alr3444 [Nostoc sp. PCC 7120] Length = 329 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 127/333 (38%), Gaps = 16/333 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D I + + + + F+ + I N++ + + + Sbjct: 2 PIYVYWGEDDFAIAKAVTTLRDRVLDPLWTSFNYTSFPPEDGDAAIQAL-NQVMTPAFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 +++ + N + + VL L + N +++ + +K L++ A Sbjct: 61 GGRLVWLMNTNLLQNCPENVLAELTRTLSVIPENSFLLLTCHNKPDERLKSTKLLKQSAT 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +F I + L+ + ++ ++ ++ ++L +G D NE++KL Sbjct: 121 EFREFPLIPPWKTEL--LIQSVNQAAQTVGVKLTPKSAELLAEAVGNDTRLLYNEMEKLR 178 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + I E V ++ +T ++ + A G A+ + + + P ++ Sbjct: 179 LYAEDSNRPIEENTVTRLVRNTTHNSLQ-LAAAIRVGDTAKALTILADLINAAEPELRII 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F+ + ++ E + + I Q E P + LQ+ ++ + + L Sbjct: 238 ATLIGQFRTWLWVKLMVESGERNPQAIAQAAEIG-NPKRIYFLQQEVQPLSLRQLISCLP 296 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + ++ + E +I+ I+ + Q + Sbjct: 297 LLLELEVTVKQGRA-EISILQIKIIELCQLCQR 328 >gi|256819305|ref|YP_003140584.1| DNA polymerase III, delta subunit [Capnocytophaga ochracea DSM 7271] gi|256580888|gb|ACU92023.1| DNA polymerase III, delta subunit [Capnocytophaga ochracea DSM 7271] Length = 338 Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 104/304 (34%), Gaps = 18/304 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + + + ++ F +VL ++ + + + S Sbjct: 18 PIYFLMGEEPYFIDIISDYIEDHVLQEDQKGFDQIVLYGQDVS--VPAIIDYARRFPMMS 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++I+++ K +D L + +++ K +++ L K +K + Sbjct: 76 DHQVIIVKEAQNLKNTIDQLVPYVENPTPTTVLVFCYKYDKLDARKKLLKTLQKNKDCVL 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + + + L SI +A Q+L+ LG D +NE+ KL+ E+ Sbjct: 136 LESKKLYENQIATWLPDVLKKKHLSIQSKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 +T ++ I + E+ +A Y + F + P L Sbjct: 196 QVTPDIIEKNIGISKEFNNYELKSAIAVNDSYKVTRILKHFADNPKDNPLVMTLTVLYGY 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 FQ L H + + S + ++ + I ++ + ++ I Sbjct: 256 FQQLLGFHGLTDQSEKN---VMATLKVPIF---------GIKDLRSGAQHYPMKRVSAII 303 Query: 318 HLAR 321 R Sbjct: 304 AALR 307 >gi|302880068|ref|YP_003848632.1| DNA polymerase III, delta subunit [Gallionella capsiferriformans ES-2] gi|302582857|gb|ADL56868.1| DNA polymerase III, delta subunit [Gallionella capsiferriformans ES-2] Length = 332 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 111/306 (36%), Gaps = 13/306 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG L+ E + + + F+ E + N S SLF+ Sbjct: 18 PLYVVYGDALLLVNEAADSIRAAARLAG---FTERDTLIAEQHFKWNELKNCAQSMSLFA 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ I + L++ + + + +I ++ + Sbjct: 75 ERRVVDLRIPTGKPGTEGGLALQDYVSDMNDDVLTLITLPKLDWTAQKTQWFSALDRHGV 134 Query: 140 ISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + C D + L D + + L +S L G+ +A+ E+QKL Sbjct: 135 MICADDIPRNQLPDWLADRLRRQSQSTDTATLDFLADRCEGNLLAAFQEIQKLGL-LFPA 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +++ + VK+ + D I ++ A ++G + D A + +L ++ Sbjct: 194 GVLSFEQVKEAVMDVARYDIFKLSEAMLKGDGARYAHILDGLRAEGTATVLILWAISEEI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDH 315 + L K+ + ++ ++ + K+N+++ + R + +H K+D Sbjct: 254 RTLGKL-LQAMQHGVNLRDAMRDVR--VRRDKQNLIESAARRLKFPHIERAIHHAAKLDK 310 Query: 316 RIHLAR 321 I R Sbjct: 311 TIKGLR 316 >gi|186684242|ref|YP_001867438.1| DNA polymerase III subunit delta [Nostoc punctiforme PCC 73102] gi|186466694|gb|ACC82495.1| DNA polymerase III, delta subunit [Nostoc punctiforme PCC 73102] Length = 329 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 45/323 (13%), Positives = 118/323 (36%), Gaps = 17/323 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D + + I + ++ F+ + I N++ + + + Sbjct: 2 PIYVYWGEDDFAMEKAIAVLRDHVLDPNWISFNYTAFTPDQADAAIQAL-NQVMTPTFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 +++ + N + + VL L + N +++ S +K L++ A Sbjct: 61 GGRLVWLINTTLYQHCPENVLAELVRSLSVIPENSFLLLSSRNKPDERLKSTKLLKQFAT 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +F I + L+ + + ++ Q+L ++G D NE++KL Sbjct: 121 EFREFPLIPPWKTEL--LVQSVNQVAQTVGVKLTANTAQLLAESVGNDTRLLYNEIEKLR 178 Query: 193 SYCLE-DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + + V ++ +T ++ + A G A+ + + P ++ Sbjct: 179 LYAYGSNKPLDVDTVTKLVRNTTQNSLQ-LAAAIRIGDTAKALTTLADMINASEPGLRIV 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F+ + I+ E + + I + P + LQ+ +++ + + L Sbjct: 238 ATLIGQFRTWLWVKIMIESGERNQQAIAIAADIG-NPKRIYFLQQEIKLLSVQQLISCLP 296 Query: 312 KIDHRIHLARKKKYLEKNIIFQT 334 + K+ + FQT Sbjct: 297 LLLE--LEVSLKQGASEMSTFQT 317 >gi|299065705|emb|CBJ36879.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum CMR15] Length = 358 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E ++ ++ FS + +E + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPELEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|149928116|ref|ZP_01916363.1| DNA polymerase III subunit delta [Limnobacter sp. MED105] gi|149823202|gb|EDM82439.1| DNA polymerase III subunit delta [Limnobacter sp. MED105] Length = 346 Score = 86.2 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 94/277 (33%), Gaps = 14/277 (5%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEK 95 + +++ + +V ++ + F + SLF ++ I K Sbjct: 36 ADLYRQRLKKQTDYQRHIVEVDRQF---DPQEFLSLFAEASLFGDVSLVDLRINQPKLSK 92 Query: 96 KVLDCLEEI---IIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLM 151 + + L + I H +++ + ++ K A+ I+C P L Sbjct: 93 EAAEALGKAAQWIAAGDTGHYLLVSAPKLNKTQEKSAGFADLLAKGCEIACRPVGADTLP 152 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 I ++ + +E L G+ + + ++KL+ + + V+ ++ Sbjct: 153 GWIAQAAKRKGVQLDRETCSWLAEKTEGNLLVAHQTIEKLAL--EHQGAVAIEQVQGMVA 210 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 ++ + ++ + + G + + A +L ++ + + Sbjct: 211 NSARFNVFDLGGSLLAGDAKRITRMMEGLEAEGEAPTLVLWALQEEIRAIRDTQQAM-RR 269 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +S ++ I ++N + +L+ N +++ Sbjct: 270 GMSLSDACRQNR--IWGQRQNHIAAALKRHNPGSLQK 304 >gi|255656457|ref|ZP_05401866.1| hypothetical protein CdifQCD-2_12334 [Clostridium difficile QCD-23m63] gi|296450097|ref|ZP_06891859.1| DNA-directed DNA polymerase III delta subunit [Clostridium difficile NAP08] gi|296878478|ref|ZP_06902484.1| DNA-directed DNA polymerase III delta subunit [Clostridium difficile NAP07] gi|296261105|gb|EFH07938.1| DNA-directed DNA polymerase III delta subunit [Clostridium difficile NAP08] gi|296430562|gb|EFH16403.1| DNA-directed DNA polymerase III delta subunit [Clostridium difficile NAP07] Length = 347 Score = 86.2 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 129/310 (41%), Gaps = 24/310 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++FYG + LI I FK +++ D F+L +++ EI N + I + Sbjct: 17 KMYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMD 73 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAE 132 +KI++I++ +K D E+ +I+++ N I+ + ++ K +L K Sbjct: 74 DRKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI- 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SR 185 ++ + C + + L I++S + I + G D+ + Sbjct: 133 -GSNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLE 191 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ K+SS+ + +T + + I ++I+ + NA+ + + + Sbjct: 192 NEINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGE 251 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + ++F+++ ++ + S + I K + + + + + + + ++ ++ Sbjct: 252 SVLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDI 308 Query: 306 VRETLHKIDH 315 + E L+ I Sbjct: 309 IVEILNYILE 318 >gi|260767230|ref|ZP_05876171.1| DNA polymerase III delta subunit [Vibrio furnissii CIP 102972] gi|260617738|gb|EEX42916.1| DNA polymerase III delta subunit [Vibrio furnissii CIP 102972] Length = 341 Score = 86.2 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 108/303 (35%), Gaps = 11/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ LI E + ++ F ++ + ++ S SLFS Sbjct: 18 PVYLVFGNEPLLIQESRSAIERKAREQG---FEEKHHFNVDASLDWHEVYDCCQSMSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I +E + L ++ + +++I ++ K + Sbjct: 75 SRQVIELEIPEAGINAAIGKELTKLAQTLNPDILLLIVGAKLTKAQENSAWFKALMAEGC 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++C + L + S EA Q+L G+ A L+KL+ D Sbjct: 135 LVNCLTPDISRLPQFVAARCRALGLSPDAEAIQMLAQWHEGNLFALAQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + ++A ++GK A + A + L+ ++ Sbjct: 194 GQLTLIRLEESLSRNNHYTPFHWVDALLEGKANRAQRILRQLAAEDVEPIILMRTAQKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 L + + ++ I +K + KR + +L+ + + + + Sbjct: 254 VQLLHMRVAM--NHQPLGAIFEKHR--VWQNKRPLYSAALQRLSIQRLHHLVQLLAQSEI 309 Query: 319 LAR 321 +A+ Sbjct: 310 VAK 312 >gi|312882705|ref|ZP_07742442.1| DNA polymerase III subunit delta [Vibrio caribbenthicus ATCC BAA-2122] gi|309369666|gb|EFP97181.1| DNA polymerase III subunit delta [Vibrio caribbenthicus ATCC BAA-2122] Length = 337 Score = 86.2 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 115/296 (38%), Gaps = 11/296 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++ G++ LI E + ++ + F+ +LE + +N + + SLF Sbjct: 17 HPIYLLLGNEPLLIEESRSAIYQSAHMEG---FTEKQRFSLEKNAHWEDIYNSVQAMSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S KKII +E + + L + + I+++ ++I K K ++ ++ Sbjct: 74 SSKKIIELELPSSGVNNSITKELAALFPLLHPDIILVVIGSKITKAQENAKWFKQLSATA 133 Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C + L I + + EA Q+L G+ +A L+KL+ Sbjct: 134 CRVNCLTPDITRLPQFIRARCKLRNLTPDDEALQMLSQWYEGNLLALNQSLEKLTL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D + ++ + ++ I +A + GK+ + + A + + ++ Sbjct: 193 DGELNLVRLEKALSRSNHYTIYHWCDALLAGKMKRSQRILRQLKAEGIEPVIITRALQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L + + N+ +I ++ I KR + +L + ++ L + Sbjct: 253 LTQLFAMATNLKLHNLH--QIFEQHR--IWQSKRPLYTAALGRLSTTKIQHLLQLL 304 >gi|315180855|gb|ADT87769.1| DNA polymerase III, delta subunit [Vibrio furnissii NCTC 11218] Length = 341 Score = 86.2 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 108/303 (35%), Gaps = 11/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ LI E + ++ F ++ + ++ S SLFS Sbjct: 18 PVYLVFGNEPLLIQESRSAIERKAREQG---FEEKHHFNVDASLDWHEVYDCCQSMSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I +E + L ++ + +++I ++ K + Sbjct: 75 SRQVIELEIPEAGINAAIGKELTKLAQTLNPDILLLIVGAKLTKAQENTAWFKALMAEGC 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++C + L + S EA Q+L G+ A L+KL+ D Sbjct: 135 LVNCLTPDISRLPQFVAARCRALGLSPDAEAIQMLAQWHEGNLFALAQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + ++A ++GK A + A + L+ ++ Sbjct: 194 GQLTLIRLEESLSRNNHYTPFHWVDALLEGKANRAQRILRQLAAEDVEPIILMRTAQKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 L + + ++ I +K + KR + +L+ + + + + Sbjct: 254 VQLLHMRVAM--NHQPLGAIFEKHR--VWQNKRPLYSAALQRLSIQRLHHLVQLLAQSEI 309 Query: 319 LAR 321 +A+ Sbjct: 310 VAK 312 >gi|253990632|ref|YP_003041988.1| DNA polymerase III subunit delta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782082|emb|CAQ85246.1| dna-directed dna polymerase iii delta chain [Photorhabdus asymbiotica] Length = 346 Score = 86.2 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 114/305 (37%), Gaps = 11/305 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G+D L+ E + ++ L+ I + S SLF Sbjct: 18 RNCYLIWGNDPLLLQESQDHIRRAAEQHSFTEHFTYTLDNHTEWNEIFSI---CQSLSLF 74 Query: 81 SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ + L+ + L ++ + ++I++ ++ K + + Sbjct: 75 ASRQTLTLLLPENGLNTVMAAQLVKLEGLLHSDMLLILRGLKLTKAQENSNWFKTLGKNG 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ISC L + + + ++ + A Q+L G+ +A L++LS Sbjct: 135 VYISCQTPELNRLPQWVAQRAKTMKLTLEEPANQLLCYCYEGNLLALTQALERLSL-LYP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V++ + D +++ + GK A + S LL ++ Sbjct: 194 DGKLTLHRVENAVNDAAHFTPYHWVDSLLLGKAKRAWHILKQLKQEDCESVILLRTVQRE 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 QLL + ++ I + ++ + + +R +L +L+ ++ ++ +H + Sbjct: 254 LQLLLTLK--RQSPTIPMKTLLDQHR--VWQNRRALLTSALQRLTQHDLQRAIHLLVQIE 309 Query: 318 HLARK 322 ++ Sbjct: 310 LRVKQ 314 >gi|269102008|ref|ZP_06154705.1| DNA polymerase III delta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161906|gb|EEZ40402.1| DNA polymerase III delta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 342 Score = 86.2 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 102/299 (34%), Gaps = 16/299 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 F+ +G++ L E I Q + F + + Q + + + + Sbjct: 17 RQAFLLFGNEPLLKLECSDAIRQCAEQHGFLERHSFIV------DNQLDWNQVLDCCQAL 70 Query: 78 SLFSKKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKF 134 SLFS +++I I L+++ + ++++ + K K E Sbjct: 71 SLFSSQQLIELDIPETGLTPTQTKALQQVTAALNPDILLVLTGPRLNKKQEAAKWFKELE 130 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + I C L I+ E+ Q+L G+ +A LQKL+ Sbjct: 131 PNGVYIPCNTPEAKFLPRFIQGRCQQLGLKPDHESVQLLAQWHEGNLLALAQSLQKLTL- 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T +++ + + ++++A + G+ + + + LL Sbjct: 190 LYPDGELTVIRLQEALSRNNHYTPFQLVDALLAGQAKRSQRILRQLQGEGVEPTILLRTI 249 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++ L K+ S I ++ + +R I + + + + ++ Sbjct: 250 QRELTQLYKMQ-ELGKKGTSLNVIFEQFR--VWQNRREIYIGAFQRLPLTTLMLLIKRL 305 >gi|329120287|ref|ZP_08248955.1| DNA-directed DNA polymerase III delta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327462628|gb|EGF08951.1| DNA-directed DNA polymerase III delta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 333 Score = 86.2 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 105/324 (32%), Gaps = 12/324 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G + L E ++ ++ + + E + T S LF+ Sbjct: 17 PLCLIHGEEDLLRVEALDTLREAAKKQGYLNRES---HTPETAADWDTLLASAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I K D L+ + + + +I +++K T K Sbjct: 74 DLKLLEIHIPGGKPGKTGGDALQTLAENLPADTVTVIVLPKLEKAQTQAKWFAALSKRGT 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + P L I L +I +A + + G+ +A++ E+ KL+ Sbjct: 134 VLEAKPVPAAALPAWIRGRLKKENLAIEDDALALFAERVEGNLLAAKQEIGKLALLHPAG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ + + D + ++ A + G + L + A LL + Sbjct: 194 HTLSMADAEQAVADVARFDVFQLAAAWMGGDAARTLKLLEGLEAEGEEPVLLLWTLAEDI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLHKIDHRI 317 + L ++ S + + + + L +++R + L + Sbjct: 254 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPQAVRRIGVARLMAALQECARTD 309 Query: 318 HLAR-KKKYLEKNIIFQTILYIAQ 340 L + + + QT+ +A Sbjct: 310 RLIKGAEAGDAWAVFRQTVCGLAV 333 >gi|209694551|ref|YP_002262479.1| DNA polymerase III subunit delta [Aliivibrio salmonicida LFI1238] gi|208008502|emb|CAQ78673.1| DNA polymerase III, delta subunit [Aliivibrio salmonicida LFI1238] Length = 345 Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 116/301 (38%), Gaps = 10/301 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G++ L E ++Q +K+ + L+ Q + + ++ + SLFS + Sbjct: 20 YLLFGNEPLLKQECLDQIRKHSFQQGFEEKHQFTLDK---QLDWNLIFDCTQALSLFSSR 76 Query: 84 KIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + + ++E++ + ++I + + K+ + + L I Sbjct: 77 QIIELTVSDTGLTAAHTSKIKELVPMLHDDILLIFQGPRVNKSQESTQWFKALTQQGLFI 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L I++ + + EA Q+L G+ +A L KLS D L Sbjct: 137 PCNTPDNQQLPRFIQQRCKLLKLKPDAEAVQMLAQWHEGNLLALAQSLDKLSL-LYPDGL 195 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T +++ + + ++++A + G+ A + + LL ++ L Sbjct: 196 LTLIRIEEALNRNNHFTPFQLMDALLFGQAKRAQRILRQLEGESVEVVILLRTIQKEVFL 255 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + + + +R++ Q +L+ + ++ + + Sbjct: 256 LLSFQ-QAISQGEAMFTVFDRYK--VWQNRRSLYQAALQRLSMTQIQALIKSLAQLEVAV 312 Query: 321 R 321 + Sbjct: 313 K 313 >gi|67923709|ref|ZP_00517176.1| DNA polymerase III, delta [Crocosphaera watsonii WH 8501] gi|67854464|gb|EAM49756.1| DNA polymerase III, delta [Crocosphaera watsonii WH 8501] Length = 365 Score = 85.8 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 123/310 (39%), Gaps = 16/310 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS- 81 V+ F+G D + + + + ++ I F+ ++ + + I NE + +F Sbjct: 39 VYFFWGEDDFALAQRVQRLRETILDPNWIQFNYQQISGEDPKSTIEAL-NEAMT-PVFGM 96 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133 K++ + N S +++L L+ I+ ++ +++ K++ L K + Sbjct: 97 GGKLVWLVNTSICQQCPEEILTQLQRILPAIPDTSHLLFTTSKKPDKRLKSSKLIKQYAE 156 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I + ++ L+ +++ ++ A ++L ++G + NEL+KL Sbjct: 157 VREYSPIPPWKTDE--LIKKVKQVAQEIGVKLTPAAVELLAESVGNNSRQLWNELEKLQL 214 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y + ++ + + + + ++ A QG A+ L D L+ P+ ++ Sbjct: 215 YGQQANQPLDEKIIATLVNANAQNSLQLAQAIRQGNQGEALQLIDDLLSRNEPALRIVAT 274 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + +F+ I + E + I + + P + L++ LR + + TL + Sbjct: 275 LVGQFRTWTIIQLKLEGGETDNKLIAKAADIP-NPNRLYFLRKELRGVSGQRLLATLPIL 333 Query: 314 DHRIHLARKK 323 R K Sbjct: 334 LD--LETRLK 341 >gi|293397304|ref|ZP_06641576.1| DNA-directed DNA polymerase III delta subunit [Serratia odorifera DSM 4582] gi|291420222|gb|EFE93479.1| DNA-directed DNA polymerase III delta subunit [Serratia odorifera DSM 4582] Length = 344 Score = 85.8 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 111/302 (36%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + ++ + L+A + ++ + SLF+ + Sbjct: 21 YLLSGNEPLLLQESQDLIRQAAQQQQFSEHYSISLDAHT---DWDAIFSICQAMSLFASR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + ++++ + + L ++ + +++++ + K + + + + Sbjct: 78 QTLLLILPENGPTAPIGEQLVKLSSLLHDDILLMLRGPRLTKAQENSAWFKALSPNGVYV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 +C + L + + + A Q+L G+ +A L++LS D Sbjct: 138 TCQTPEQAQLPRWVATRAKTMKLEVDDAANQLLCYCYEGNLLALAQALERLSL-LYPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A + LL ++ + Sbjct: 197 LTLPRVEQAVNDAAHFSPYHWLDALLAGKSKRAWHILQQLQQEDAEPVILLRTLQRELLM 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + + + + +RN++ ++L+ + +++ +H + Sbjct: 257 LLTLQRRMASA--PLRTLFDQHK--VWQNRRNLITQALQRLSAAQLQQAVHLLTQIEITL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|295695850|ref|YP_003589088.1| DNA polymerase III, delta subunit [Bacillus tusciae DSM 2912] gi|295411452|gb|ADG05944.1| DNA polymerase III, delta subunit [Bacillus tusciae DSM 2912] Length = 362 Score = 85.8 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 22/320 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + ++ + + ++ +L + E I E + F Sbjct: 17 PVYVLGGPETYVARMVVEELENACGLSV-PELNLGRYDLSET--PIQQVALEARTPPFFG 73 Query: 82 KKKIILIENL---STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNT---LRKIAE 132 +++++ S KV L EE + ++++ + K + +R++ E Sbjct: 74 DRRLVIATGGEALSGRSKVPHDLTSWEEYVADPSPTAVVVLLLGDHKMDERKKWVRRVKE 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + C + L + + + + +A L+ GG EL KLS Sbjct: 134 TGRWWM---CPSPKESELTAWVNKEVQRRGFRMGADAVNRLILMSGGHLALIAGELDKLS 190 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y I+ + V ++ I ++ ++ + A+ D L K LL Sbjct: 191 LYAPGQ-TISREDVDLLVVPFPEQDIFRWVDDVVRLDMDRALTGLDRLLKQKENPFKLLM 249 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++F+L+ + +++ + E + P I E R + + + L Sbjct: 250 LLARQFRLMYHALNEYKSGHVNTDL---SAELGVRPYALKIALEQGRRYTLRQLSDVLQW 306 Query: 313 IDHR---IHLARKKKYLEKN 329 + I R+ N Sbjct: 307 LADADADIKTGRRTDRAALN 326 >gi|90581610|ref|ZP_01237401.1| DNA polymerase III subunit delta [Vibrio angustum S14] gi|90437193|gb|EAS62393.1| DNA polymerase III subunit delta [Vibrio angustum S14] Length = 341 Score = 85.8 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L E I Q + F++ + Q + + + + Sbjct: 17 RQAYLLFGNEPLLKQECGDNIKQLAQQQGFLERHRFTI------DNQLDWNQVLDCCQAM 70 Query: 78 SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLFS ++II +E L E++ + + ++ + K K + Sbjct: 71 SLFSAQQIIELEFPETGLNANQAKALLEVVAHLNPDILFLLTGPYLNKKQEATKWFKALD 130 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L + C + + I+ + E+ Q+L G+ +A L KL Sbjct: 131 GLGLYVPCNTPDAKQMPRFIQARCRMLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T +++ + + ++++A + G+ + + + + LL Sbjct: 190 LYPDGELTIIRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGIEATILLRTL 249 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ L K+ I ++ + +R I +L + + + + ++ Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREIYVGALHRLPLSRLVKIIRQLT 306 Query: 315 HRIHLAR 321 + Sbjct: 307 QLEIQVK 313 >gi|218248896|ref|YP_002374267.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 8801] gi|257061956|ref|YP_003139844.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 8802] gi|218169374|gb|ACK68111.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 8801] gi|256592122|gb|ACV03009.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 8802] Length = 327 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 121/316 (38%), Gaps = 10/316 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F+G D I + + + + +I F+ + + + + F Sbjct: 2 PVYLFWGEDDFAIAQAVQKRRDSILDPNWIEFNYHKIPGDQSDAMVEALNQAMTPVFGFG 61 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135 +++ + +L LE + +++ S++ K + L+ K+ EK+ Sbjct: 62 G-RLVWVVESIICQQCSDSLLAQLERTLPAIPDISHLLLTSSK-KPDRRLKSTKLLEKYA 119 Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ S P N LM ++ ++ +A +++ ++G + R+EL+KL Y Sbjct: 120 TIQEFSPIPPWNTDELMAQVQRMASEIGLKLTLKATELIAESVGNNTRQLRHELEKLHLY 179 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + + + + ++ QG A+ L ++ P+ ++ Sbjct: 180 SNNQTKALDVDIIATLVNANTQNSLQLAQVIRQGNSDRALQLITDLISRNEPALKIVATL 239 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+ I + E EK+I + P + L++ L+ ++ + TL + Sbjct: 240 VGQFRSWAIIKLTIESGEKD-EKVIAQAADIANPKRLYFLRKELQPFSGQQLLGTLPILL 298 Query: 315 HRIHLARKKKYLEKNI 330 ++ + + + Sbjct: 299 DLELSLKRGSHPLETL 314 >gi|17547461|ref|NP_520863.1| DNA polymerase III subunit delta [Ralstonia solanacearum GMI1000] gi|17429764|emb|CAD16449.1| probable dna polymerase III (delta subunit) protein [Ralstonia solanacearum GMI1000] Length = 358 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E ++ ++ FS + +E + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGESGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPELEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|227551298|ref|ZP_03981347.1| DNA polymerase III subunit delta [Enterococcus faecium TX1330] gi|227179578|gb|EEI60550.1| DNA polymerase III subunit delta [Enterococcus faecium TX1330] Length = 348 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 23 YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 80 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 81 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 140 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +++ + N+ + + +L + + A + L D ELQKL Sbjct: 141 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 198 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V+ ++ T I ++ ++GK A+ L + + + + Sbjct: 199 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 258 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + +R +++ L+ + + Sbjct: 259 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 315 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 316 LVEMDYQI-KTGQIEKELSFQLFVLCTGQLLRNR 348 >gi|254976069|ref|ZP_05272541.1| hypothetical protein CdifQC_12179 [Clostridium difficile QCD-66c26] gi|255093460|ref|ZP_05322938.1| hypothetical protein CdifC_12479 [Clostridium difficile CIP 107932] gi|255101635|ref|ZP_05330612.1| hypothetical protein CdifQCD-6_12549 [Clostridium difficile QCD-63q42] gi|255307504|ref|ZP_05351675.1| hypothetical protein CdifA_12997 [Clostridium difficile ATCC 43255] gi|255315202|ref|ZP_05356785.1| hypothetical protein CdifQCD-7_12657 [Clostridium difficile QCD-76w55] gi|255517871|ref|ZP_05385547.1| hypothetical protein CdifQCD-_12216 [Clostridium difficile QCD-97b34] gi|255650987|ref|ZP_05397889.1| hypothetical protein CdifQCD_12421 [Clostridium difficile QCD-37x79] gi|306520859|ref|ZP_07407206.1| DNA polymerase III, delta subunit [Clostridium difficile QCD-32g58] Length = 347 Score = 85.8 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 128/310 (41%), Gaps = 24/310 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++FYG + LI I FK +++ D F+L +++ EI N + I + Sbjct: 17 KMYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMD 73 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAE 132 +KI++I++ +K D E+ +I+++ N I+ + ++ K +L K Sbjct: 74 DRKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI- 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SR 185 + + C + + L I++S + I + G D+ + Sbjct: 133 -GNNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLE 191 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ K+SS+ + +T + + I ++I+ + NA+ + + + Sbjct: 192 NEINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGE 251 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + ++F+++ ++ + S + I K + + + + + + + ++ ++ Sbjct: 252 SVLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDI 308 Query: 306 VRETLHKIDH 315 + E L+ I Sbjct: 309 IVEILNYILE 318 >gi|261253670|ref|ZP_05946243.1| DNA polymerase III delta subunit [Vibrio orientalis CIP 102891] gi|260937061|gb|EEX93050.1| DNA polymerase III delta subunit [Vibrio orientalis CIP 102891] Length = 337 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 14/321 (4%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I + + +++ K L H ++ +GS+ LI E +K + ++ Sbjct: 3 IFADRLVEQLNKQL---HPTYLIFGSEPLLIQESRQAIQKAAFAQGFEERHRFAIDNSF- 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + + ++ + SLFS ++II +E + L + + I ++ +++ Sbjct: 59 --DWNAVYDCCQAMSLFSAQQIIELELPESGVNAGIAKELISVSEMLHSDIIFVLIGSKL 116 Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K K + + ++C + L ++ +EA Q+L G+ Sbjct: 117 TKAQENAKWFKALANNGCWVNCLTPDIQRLPQFVQARCRALNLKPDQEAVQMLAQWHEGN 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A L+KL+ D ++ +++ + + I+A + GK + + Sbjct: 177 LFALTQSLEKLAL-QYPDGILNLVRLEESLSRHNHFTAFHWIDALLAGKAKRSQRILRQL 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + S L+ ++ L + + ++ + I KR + +L Sbjct: 236 EAEGVESVILIRTVQKELTQLLNMANQIQL--KPIGQVFESYR--IWQSKRPLYSSALNR 291 Query: 301 WNKNLVRETLHKIDHRIHLAR 321 + + L + L + Sbjct: 292 LTPRKIIQLLQLLAKIELLVK 312 >gi|145298095|ref|YP_001140936.1| DNA polymerase III, delta subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142850867|gb|ABO89188.1| DNA polymerase III, delta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 343 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 110/302 (36%), Gaps = 12/302 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + L E I+ ++ D V+ A + + ++ + SLFS Sbjct: 18 PCYLIFGDEPLLKLEAIDAIRQVARKQGFDERHTFVVEAG---LDWNQVYDACQAMSLFS 74 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 ++II +E + +K + + EI + + ++++ + + +K + Sbjct: 75 ARQIIELELPAKVDKDLAARISEIGKQLHPDLLLVLSGGRLNQTQMKAAWFDKLSQGGTY 134 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + +A + + G+ +A+ E++KL+ Sbjct: 135 VPVNHPEPRFFPRWMGARFQRFGLKALPDAINFMCHSYEGNLLAASQEIEKLTLLAPPQP 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+ ++++ I ++I+ ++GK+ A + A L ++ + Sbjct: 195 -ISVAYLQETIIRHAHFTPFQLIDTLLEGKVNRAQRILLALRAEGTEPGMLSWALCRELE 253 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKIDHR 316 L ++ + E + I ++ ++Q++L + + + ++D Sbjct: 254 QLTELALAARAGQPLVEH-FSRLR--IWQSRQQLIQQALTRLPFTKLQQLWQLMAQLDDA 310 Query: 317 IH 318 + Sbjct: 311 LR 312 >gi|331270021|ref|YP_004396513.1| hypothetical protein CbC4_1842 [Clostridium botulinum BKT015925] gi|329126571|gb|AEB76516.1| conserved hypothetical protein [Clostridium botulinum BKT015925] Length = 345 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 119/275 (43%), Gaps = 17/275 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++F GSD+ I I++ + + L+ + ++ + N + L S+K Sbjct: 25 YVFCGSDEQSIKSNIDKIINKVVNKDFLELNYAQLDGMVVEM--ESIINACETLPLMSEK 82 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132 ++++I + + +KV + L++ I + ++I I N+ +K ++ K + Sbjct: 83 RVVVIYRANFLRDKVDKSAEKVFNGLKKYIKDLPQDCVLIMYYIFENDREKESSKLKKID 142 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ S + L + E K+I++ + + + NE++KLS Sbjct: 143 KDATVVKFSKLK--GMALQKKVSEIFKRKNKNITRSDLALFCNTVENNMDIIENEVEKLS 200 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y ++ IT + + D+I + I +++ Q K N++ + + + +L Sbjct: 201 CYTID-REITTKDINDLIVGKNDNDIFNLVDFVSQKKPQNSLDILNELVFKGESVTGILR 259 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 ++F+L+ I + E ++ ++I ++ + Sbjct: 260 MIQRQFKLIFDIKLSME-KGMNKDEISKELRLHPF 293 >gi|291530561|emb|CBK96146.1| DNA polymerase III, delta subunit [Eubacterium siraeum 70/3] Length = 360 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 114/332 (34%), Gaps = 19/332 (5%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YG ++ L+ ++ + +L+ L + T + I+S LF+ K Sbjct: 33 LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSMPLFADSKA 89 Query: 86 ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136 +LI +L EK ++ + + +II + ++KK N L K + Sbjct: 90 VLISDLDLEKFDDNGIETILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +LI + IS+ Q + D + E KL SY Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRADAQHIAELTLCDLSLASTETDKLCSYA- 208 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + + + I + ++G A+++ D +A K+ +L Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLIAQKIEPVVILAALSS 268 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313 + + + + S ++ + ++ ++ + + +R L + Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ +TI+ ++ + Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKSRR 357 >gi|158336795|ref|YP_001517969.1| DNA polymerase III subunit delta [Acaryochloris marina MBIC11017] gi|158307036|gb|ABW28653.1| DNA polymerase III, delta subunit [Acaryochloris marina MBIC11017] Length = 339 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 127/329 (38%), Gaps = 19/329 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW---NEINSTS 78 V++F+G D + + + + + F+L ++ ++ N++ + Sbjct: 2 PVYLFWGEDTYRLSKAVQALHQEVLDPEWLSFNLDKIDVASGSDGTASVIQGLNQVMTPP 61 Query: 79 LFSKKKIILIENL--STEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFT 135 +++ + N +L E + +H+++ ++ + + L K+ +K Sbjct: 62 FGLGHRLVWLTNPLVGATADLLPEFERTLPDLPPTSHLLLTQTTKPDGRSKLTKLLQKQA 121 Query: 136 SV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 V I + ++ +++ + + +++ A + L +G D EL+KL Sbjct: 122 QVTEFALIPPWK--TAQILQMVKRAAHDLEVPLTQAAGEQLADAVGNDTRRLYGELEKLK 179 Query: 193 SYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 Y L I + V+ ++ T ++ + QG+ A+ L L P Sbjct: 180 LYSLSSDAQNNTKRIGLEIVQHLVSSTTQNSLQ-LAETIRQGQTDQALGLVAELLNLNEP 238 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ +++F+ + ++ S E++I + + P + L+++++ + Sbjct: 239 GLKIVATLIRQFRTWLWVKLMV-VSGEQDERVIARAAEVGNPKRIYFLKQAVQTVTCQQL 297 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTI 335 R++L + ++ + +I + Sbjct: 298 RQSLSCLLDLEVALKQGEAPRSTLITTVV 326 >gi|157376613|ref|YP_001475213.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157318987|gb|ABV38085.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 346 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 112/319 (35%), Gaps = 12/319 (3%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + ++L ++ +G D L + + D F V E N + Sbjct: 6 DQLARHLKPLQQCYLIFGDDPWLCETSRTQIYAQA----KRDGFEEKVQLTQENNFNWNE 61 Query: 70 FWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 +E + SLFS +++I + + + ++ + ++II ++ T Sbjct: 62 LVDEWQAMSLFSSRRVIELTLPQAKPGSEGGTIFQHLMQMENPDVLLIITGPKLAAEQTK 121 Query: 128 RKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 K + + I C ++ + + ++++A+++L + G+ +A+ + Sbjct: 122 SKWFKTLDAKGVYIPCATPEGQQFQRWLDGRISHFKLLLTRDAREMLFSLYEGNLLAA-D 180 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + +L + I Q ++ D + ++ +A + A + A + Sbjct: 181 QSLQLLQLLSPNTEINSQQLESYFEDQSRFSVFQLTDAMLYNHQDKAQHILSQLKAEGVA 240 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ G ++ +L ++ E S + + K I ++ + Q +L + Sbjct: 241 MPIIMWGIFKELAILLQLKSALESQ-QSLQTLWSKLR--IWDKRKPLYQAALNRLTLTQI 297 Query: 307 RETLHKIDHRIHLARKKKY 325 L +++ Sbjct: 298 ESLLCGASAIELKLKQQGM 316 >gi|256827202|ref|YP_003151161.1| DNA polymerase III, delta subunit [Cryptobacterium curtum DSM 15641] gi|256583345|gb|ACU94479.1| DNA polymerase III, delta subunit [Cryptobacterium curtum DSM 15641] Length = 330 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 106/309 (34%), Gaps = 9/309 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D +I + + I+ F+ + + Q N+ S Sbjct: 19 PAYLVTGTDDLKKEAVIRRLHERIAREGDLSFNRDEFDGAQAQGEA--IVASCNTLPFAS 76 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ + K + + E + ++ + + + KN L K K + I Sbjct: 77 PVRLVEVFAADRLKGSDVAQVIEYLAAPNNQTVLCLVATGLAKNTRLYKAVAKLGAQAVI 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C P + L + SI++ A L+ +G + +A E++KL+ Sbjct: 137 DCAPPTRRDLPKKVSALAASQGVSITQAAIGTLIDLVGENTVALNAEIRKLALAHWGSDA 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I E V+ ++ T+ E ++A + +++ + ++ LL + + + Sbjct: 197 INENEVRALVSRTNEAKPWEFVDAFSSRNVERCLVIQAQL--GDISAYRLLALCVTRIRE 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + + +N + + R ++ + + L Sbjct: 255 LIMTKALVNRGQV---QTLPDLLHLPAWRVKNHVTWA-RGFSVSELHRALESARDTELAM 310 Query: 321 RKKKYLEKN 329 + E++ Sbjct: 311 KSGANPEES 319 >gi|319955262|ref|YP_004166529.1| DNA polymerase iii, delta subunit [Cellulophaga algicola DSM 14237] gi|319423922|gb|ADV51031.1| DNA polymerase III, delta subunit [Cellulophaga algicola DSM 14237] Length = 332 Score = 85.4 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 101/263 (38%), Gaps = 8/263 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I +L + N+ F+ + L ++ I + + + Sbjct: 18 PIYFLMGEEAYYIDKLSEYIENNVLAEEERGFNQMTLYGKDVT--IDDIISNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++I+++ + +D L +++I K ++ K + K +K + Sbjct: 76 EHQVIIVKEAQHLSRSIDNLAAYAENPQPTTVLVICYKYAKLDKRKKVYKAVQKA--GVL 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + D I + L I+ +A +L+ LG D NEL+KL + Sbjct: 134 FESKKLYENQVADWIRKVLAGSGYGITPKAAILLVEFLGTDLSKINNELEKLKLVIPKTE 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL--QK 257 IT Q +++ I + E+ A + + A + ++F + + +L L Sbjct: 194 EITPQAIEENIGISKDYNNFELKKALGERNVMKATRILNYFAQNPKDNPFILTITLLNSF 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280 F L + H +K+ + + ++ Sbjct: 254 FTQLLQYHGLKDHNPKTVASVLG 276 >gi|301066376|ref|YP_003788399.1| DNA polymerase III subunit delta [Lactobacillus casei str. Zhang] gi|300438783|gb|ADK18549.1| DNA polymerase III, delta subuni [Lactobacillus casei str. Zhang] Length = 347 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L + ++ + + Q + N+ S F Sbjct: 17 PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 + ++I++ L+ EK L L+ + + +++I + ++ + L K Sbjct: 74 DYREVVIDDPYFLTGEKNADKVDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K ++ + ++ + ++ Q +I A L+ G E++K Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +Y + +T V+ ++ + +++ ++ A+ L LA + L Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+LL ++ ++ S I + P + + + + Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336 + A K ++K + F+ + Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333 >gi|171057172|ref|YP_001789521.1| DNA polymerase III subunit delta [Leptothrix cholodnii SP-6] gi|170774617|gb|ACB32756.1| DNA polymerase III, delta subunit [Leptothrix cholodnii SP-6] Length = 362 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 100/298 (33%), Gaps = 14/298 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ +G + L E + + H S+ + + S E + SLF Sbjct: 17 RPLYVIHGDEPLLAQEAADLIRAAARKAGHTERSVYTVAGAHF--DWSGLLGEAQALSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137 + K++I I K + L+ + ++I +I + + Sbjct: 75 ADKRLIEIRIPGGKPGKDGSEALQRYVETLSDDNITLIVLPRLDRTQLASAWFTALDGAG 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISK-----EAKQILLANLGGDRIASRNELQKLS 192 ++ P + L I + L Q+ + + G+ +A+ E+ KL Sbjct: 135 ASVRVDPIERRALPQWIAQRLAAQQQRVEDGEPGQRCLAFFADCIEGNLLAAHQEISKLG 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++T + V+ + + + ++ + + G++ A+ + + A + + Sbjct: 195 L-LHPPGVLTFEQVEGAVLNVARYDVFKLGESVLAGQVARALRMLEGLQAEGEAAVLVHW 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L ++ + + + + K + + + + + E + Sbjct: 254 TLSEDLRSLARVQAALQQGRPLPMALREARVWGV---KEKLFERIVPGLSTERLAELI 308 >gi|116494815|ref|YP_806549.1| DNA polymerase III, delta subunit [Lactobacillus casei ATCC 334] gi|191638325|ref|YP_001987491.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus casei BL23] gi|116104965|gb|ABJ70107.1| DNA polymerase III, delta subunit [Lactobacillus casei ATCC 334] gi|190712627|emb|CAQ66633.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus casei BL23] gi|327382351|gb|AEA53827.1| DNA polymerase III subunit delta [Lactobacillus casei LC2W] gi|327385552|gb|AEA57026.1| DNA polymerase III subunit delta [Lactobacillus casei BD-II] Length = 347 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L + ++ + + Q + N+ S F Sbjct: 17 PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 + ++I++ L+ EK L L+ + + +++I + ++ + L K Sbjct: 74 DYREVVIDDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K ++ + ++ + ++ Q +I A L+ G E++K Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +Y + +T V+ ++ + +++ ++ A+ L LA + L Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+LL ++ ++ S I + P + + + + Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336 + A K ++K + F+ + Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333 >gi|254432354|ref|ZP_05046057.1| DNA polymerase III, delta subunit [Cyanobium sp. PCC 7001] gi|197626807|gb|EDY39366.1| DNA polymerase III, delta subunit [Cyanobium sp. PCC 7001] Length = 337 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 38/328 (11%), Positives = 105/328 (32%), Gaps = 25/328 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D+ + + +L L+ +I + E + S Sbjct: 2 PIHLLWGDDEAARGRRVEVLIAELVDPAWAAINLSRLDGQDIAQ-AGRALEEARTPPFGS 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--------- 128 +++L++ ++ + E + + +++ N K + LR Sbjct: 61 GARLVLLQRSPFCNQCPAELAEPFEATLPLIPSDCHLVLV-NAAKPDGRLRTTKALQRLV 119 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K E + D + L+ + + A + L +G D +EL Sbjct: 120 KAGEAEEQAFQLPAIWDGAGQVE-LVHRTARELGLQLEPGAAEALSEAIGNDSARLASEL 178 Query: 189 QKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +KL + + I + V+ ++ + + +A ++G+ AI L D L Sbjct: 179 EKLQLFGQGAAAQAGQAEAIGVEAVRALVGGHSTSAL-AVGDALLEGQPVAAIALVDSLL 237 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 P+ ++ + + + ++ + I + P + ++++ ++ Sbjct: 238 EGGEPALRIVAALTSQIRGWLWVALLDQRGERDVAVIAKAAGIG-NPKRIYVMRKQIQGR 296 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 297 PAGRFLSLLSQLLDVEAALKRGTDPGDA 324 >gi|300703053|ref|YP_003744655.1| DNA-directed DNA polymerase subunit delta [Ralstonia solanacearum CFBP2957] gi|299070716|emb|CBJ42011.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum CFBP2957] Length = 358 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 122/338 (36%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E+++ ++ ++ + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEVVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ +++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|87309275|ref|ZP_01091411.1| hypothetical protein DSM3645_21769 [Blastopirellula marina DSM 3645] gi|87287914|gb|EAQ79812.1| hypothetical protein DSM3645_21769 [Blastopirellula marina DSM 3645] Length = 368 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 51/334 (15%), Positives = 123/334 (36%), Gaps = 31/334 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK-- 82 I YG + L + Q ++ + + + L+ +E+ + SLF Sbjct: 23 IVYGREALLARLALQQVRQTVVGVDEEDVPIARLDGKTAAWR--DVIDEVGTVSLFGGGS 80 Query: 83 KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++++++ + LE+ K + ++++ KN L K + + L + Sbjct: 81 RRLVILDGADDFVTRYRAELEKYADKPKRSGVLVLVVENWPKNTKLFKKLD--QTGLQVD 138 Query: 142 CY-----------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 C PD K +I+ + + ++A ++++ +G + +L + Sbjct: 139 CNLPEKKAGKRNVPDAKALHDWMIKWAKKSHGIKLERDAAEMMVELIGPELGLIDQDLAR 198 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS Y + + V+D++ + I ++++A ++G+ + D L Sbjct: 199 LSLYVEPGGKVGAELVRDVVGGLRMKAIWDLVDAAVEGRTAGVLDDLDRLFQMGERPQKL 258 Query: 251 LHGF---LQKFQLLEKI--HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN--- 302 L+++ +I + S + P + QE L+ Sbjct: 259 YGQIAWSLRRYAAAARIYQRAQRIGEAKSLRNALADAGFPNWPKALDEAQERLKRLGSIR 318 Query: 303 KNLVRETLHKIDHRI-----HLARKKKYLEKNII 331 + + L ++D + H AR + LEK ++ Sbjct: 319 AGRLFQQLLRLDLSLKGTHSHDARGRLALEKLLV 352 >gi|290476193|ref|YP_003469093.1| DNA polymerase III subunit delta, probably ATP hydrolase [Xenorhabdus bovienii SS-2004] gi|289175526|emb|CBJ82329.1| DNA polymerase III, delta subunit, probably ATP hydrolase [Xenorhabdus bovienii SS-2004] Length = 346 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 119/314 (37%), Gaps = 29/314 (9%) Query: 21 HFVFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L+ E I + + H FSL + ++ S Sbjct: 18 RNNYLLWGNEPLLLQESQDSIRRVAEQHGFLEHFTFSLDNHTEWD------EIFSLCQSL 71 Query: 78 SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLFS ++ +L+ +++ L ++ + ++I+ + + L K E Sbjct: 72 SLFSSRQSLTLLLPENGPNAAMVERLTKLSGLLHADILLIL------RGHKLTKAQENSP 125 Query: 136 -------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + + +SC + L + + S+ EA Q+L G+ +A L Sbjct: 126 WFKTLGQNGVYVSCLTPEQNRLPQWVAQRARSMGLSLEDEANQLLCYCYEGNLLALAQAL 185 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++LS D +T V++ + D ++A + GKI A + S Sbjct: 186 ERLSL-LHPDNRLTLPRVEEAVNDAAHFAPYHWVDALLAGKIKRAWHILKQLRQEDTESI 244 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 LL ++ LL + ++ + + + + I +R++L +L+ ++ ++ Sbjct: 245 ILLRTIQRELILLLTLK--RQDKTTPLKTLFDQHK--IWQNRRSLLTAALQRLSQQDLQS 300 Query: 309 TLHKIDHRIHLARK 322 +H + ++ Sbjct: 301 AIHLLTQMELCVKQ 314 >gi|207721579|ref|YP_002252018.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum MolK2] gi|206586740|emb|CAQ17325.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum MolK2] Length = 358 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 121/338 (35%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E ++ ++ ++ + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ +++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|293552883|ref|ZP_06673541.1| DNA polymerase III, delta subunit [Enterococcus faecium E1039] gi|291603017|gb|EFF33211.1| DNA polymerase III, delta subunit [Enterococcus faecium E1039] Length = 344 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 134/334 (40%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTDYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K ++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KAAIIINVQ--QLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|126700091|ref|YP_001088988.1| hypothetical protein CD2474 [Clostridium difficile 630] gi|260684055|ref|YP_003215340.1| hypothetical protein CD196_2320 [Clostridium difficile CD196] gi|260687715|ref|YP_003218849.1| hypothetical protein CDR20291_2367 [Clostridium difficile R20291] gi|115251528|emb|CAJ69361.1| putative DNA polymerase III, delta subunit [Clostridium difficile] gi|260210218|emb|CBA64446.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213732|emb|CBE05635.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 330 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 128/309 (41%), Gaps = 24/309 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++FYG + LI I FK +++ D F+L +++ EI N + I + Sbjct: 1 MYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMDD 57 Query: 83 KKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAEK 133 +KI++I++ +K D E+ +I+++ N I+ + ++ K +L K Sbjct: 58 RKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI-- 115 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SRN 186 + + C + + L I++S + I + G D+ + N Sbjct: 116 GNNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLEN 175 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E+ K+SS+ + +T + + I ++I+ + NA+ + + + Sbjct: 176 EINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGES 235 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + ++F+++ ++ + S + I K + + + + + + + ++ +++ Sbjct: 236 VLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDII 292 Query: 307 RETLHKIDH 315 E L+ I Sbjct: 293 VEILNYILE 301 >gi|257784606|ref|YP_003179823.1| DNA polymerase III, delta subunit [Atopobium parvulum DSM 20469] gi|257473113|gb|ACV51232.1| DNA polymerase III, delta subunit [Atopobium parvulum DSM 20469] Length = 323 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 79/226 (34%), Gaps = 7/226 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN--ISTFWNEINSTSLF 80 ++ G D+ L + + F L+ + + + + + + + Sbjct: 10 AYLAVGPDE-LKRARA---IDKLKSRLNQSFITFNLDEISVSAELTPESVLSSVQTLPMG 65 Query: 81 SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++I++I++ K V + L E + +++ + + K+ L K + + Sbjct: 66 DFRRIVVIDDAGKLPKPVSEALIEYLKNPNPTTTLMLSAKTLAKSTRLYKAVDALGKLAI 125 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+C + L + + I A L++ +G + ++++ L+S Sbjct: 126 INCGAIARNELPKYVWDLGQKYGLQIPTNAANELISRVGDNTTMLDSQIKSLASLLGHTG 185 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 I V+ + + + +++ + A+ L S Sbjct: 186 SIDIHFVETHVARVVEVKPWDFLDSISARNVQKAMELYSQMDESGA 231 >gi|304413510|ref|ZP_07394983.1| DNA polymerase III delta subunit [Candidatus Regiella insecticola LSR1] gi|304284353|gb|EFL92746.1| DNA polymerase III delta subunit [Candidatus Regiella insecticola LSR1] Length = 343 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 118/317 (37%), Gaps = 16/317 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLN 59 M I + ++ L H ++F G+D L E + + F++ Sbjct: 1 MIRIYPQQLARQLNAGL---HGCYLFCGNDPLLRQESQESLHHAAQQHNFSEYFNIT--- 54 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117 L+ + ++ S SLF+ ++I+ + + L +++ + ++I+ Sbjct: 55 -LDAHTDWEAIFSICQSLSLFASRQILSLTFPETGLSALMSQQLIKLVTLLHPDILLILG 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + + + + ++C + L + + + + A +L Sbjct: 114 INKLIKTQENSQWYKALSQNAVLVNCQTPDHTQLPRWMNTRAKKMKLEVDEAAILLLCDC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A LQ LS C D +T V+ + ++ ++A + G + Sbjct: 174 YEGNLLALSQALQTLSL-CYPDGKLTLPRVEQAVHNSACFTPYHWLDAVLAGSRQRTWHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + LL ++ LL + + + ++ + + ++ +RN L + Sbjct: 233 LKKLQQEEDTPVILLRILQRELLLLTTLKRQMKQTGLT----VLFEQYHVWQNRRNALTQ 288 Query: 297 SLRIWNKNLVRETLHKI 313 +L+ + + + +H + Sbjct: 289 ALQRLSIQQIYQAIHLL 305 >gi|294338593|emb|CAZ86922.1| putative DNA polymerase III, delta subunit [Thiomonas sp. 3As] Length = 363 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 19/299 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L+ E ++ + D + + S SLF Sbjct: 19 LYVVYGDETLLVNEAVDAIRARARQQGFDERESHTVERGF---DWSHLLAGSREISLFGG 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +++I I + + L + + + ++ + +A Sbjct: 76 RRLIELRIPGGKPGRDGGEALAALADHLSADVMAVVILPRLDAATQKSAWFSALSQGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSSY 194 + L I L ++ + L+A + G+ +A+ E++KL+ Sbjct: 136 VRVDSVELAQLPRWIAARLQRHGFTLPASDAGRALTDFLVARVEGNLLAAHQEIEKLALL 195 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 C + V+ + + + ++ A + G + + D A + + Sbjct: 196 C-PPGPLDPDTVEQAVLNVARYSVFKLGEAVLGGDVARLRRMLDGLQAEGVAPVLVHWTL 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNKNLVRETLH 311 + +I + + + + I +K +L+ +L + L Sbjct: 255 ADDIRAWLRIR-----QGLDAGQALPALLRANRIWGVKEKLLERALPRLRTPDLERLLQ 308 >gi|291557846|emb|CBL34963.1| DNA polymerase III, delta subunit [Eubacterium siraeum V10Sc8a] Length = 360 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 114/332 (34%), Gaps = 19/332 (5%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YG ++ L+ ++ + +L+ L + T + I+S LF+ K Sbjct: 33 LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSIPLFADSKA 89 Query: 86 ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136 +LI +L EK ++ + + +II + ++KK N L K + Sbjct: 90 VLISDLDLEKFDDNGIEIILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +LI + IS+ Q + D + E KL SY Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRTDAQHIAELTLCDLSLASTETDKLCSYA- 208 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + + + I + ++G A+++ D +A K+ +L Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLIAQKIEPVVILAALSS 268 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313 + + + + S ++ + ++ ++ + + +R L + Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ +TI+ ++ + Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKSRR 357 >gi|120436660|ref|YP_862346.1| DNA polymerase III subunit delta [Gramella forsetii KT0803] gi|117578810|emb|CAL67279.1| DNA polymerase III subunit delta [Gramella forsetii KT0803] Length = 334 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 116/326 (35%), Gaps = 27/326 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + ++NI F+ +++ + I + + + Sbjct: 18 PIYFLMGEEAYYIDKISDFIEENILSEEERGFNQMLIYGRDTS--IDEVVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++++ + ++ L + +++I K +I K L K +K + Sbjct: 76 ERQVVILKEAQDLSRSIEKLVDYAENPQPTTVLVICYKYKKIDKRKKLYKSIDKSGVIF- 134 Query: 140 ISCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 L D I +L SIS +A Q+L+ LG D NEL+KL Sbjct: 135 ------EGKRLYENQVGDWITRNLKSRGYSISPKASQMLVEFLGTDLGKIDNELEKLQLI 188 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 C IT + +++ I + E+ A + A + ++F + P + Sbjct: 189 CKPGTTITPEIIEENIGISKDFNNFELRKAIGEKDSLKAHRIVNYFSQNPKDNPMVVTIS 248 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH 311 F + + H + ++ S + ++ + + R + V + Sbjct: 249 LLFSYFSQILQYHGL---NDKSKGVVAKQLKVSPYFVSD---YVSAARNYPMKKVSHAIS 302 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILY 337 + + K NI +L Sbjct: 303 LLQET--DVKSKGVGATNIAQGDLLK 326 >gi|150390807|ref|YP_001320856.1| DNA polymerase III, delta subunit [Alkaliphilus metalliredigens QYMF] gi|149950669|gb|ABR49197.1| DNA polymerase III, delta subunit [Alkaliphilus metalliredigens QYMF] Length = 346 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 113/306 (36%), Gaps = 23/306 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L+ + + KK + + + + +I + + + + Sbjct: 17 NLYLLYGEESYLMENIAQKLKKKVVSSGFEELNFSYFEGKDIT--VEKLIDACETLPFMA 74 Query: 82 KKKIILIENLS---TEKKVLDCLEE------IIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 ++K++LI+N ++K + +EE I ++ + + + K + Sbjct: 75 EEKLVLIKNFDAFQGKRKSISEVEEEELIHYIAKLPRTTCLVFYGTTSVDSRKKIVKAVK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL---GGDRIASR---- 185 K + + L I + L K+I + +L ANL G + S Sbjct: 135 KHGKHYEFQKLKE--LELEKWISKKLKQATKTIERRELSLLTANLDYLGRNTNQSLYDVD 192 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ KL ++ ++ + H++ I+ + I ++++A A+ + Sbjct: 193 NEINKLVAFMGKEERVIHTHIEAIMTNNLQNDIFKLLDAIGNRNGREALRRLHQMVTEGE 252 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 P +L + + + I ++ E + + + ++ P + ++ R + Sbjct: 253 PIMRVLFTMSNQIKNILSIKLLVEDG---YSSKMAADKISVHPYVASKCEQQSRGFRIEA 309 Query: 306 VRETLH 311 + + Sbjct: 310 LIRIMQ 315 >gi|330828601|ref|YP_004391553.1| DNA polymerase III subunit delta [Aeromonas veronii B565] gi|328803737|gb|AEB48936.1| DNA polymerase III, delta subunit [Aeromonas veronii B565] Length = 345 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 109/301 (36%), Gaps = 12/301 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E I+ ++ D V+ + + ++ + SLF Sbjct: 17 RPCYLVFGDEPLLRLEAIDAIRQVARKQGFDERHTFVVEQG---LDWNQVYDACQAMSLF 73 Query: 81 SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 S ++II +E + +K + + EI + + ++++ + + +K + Sbjct: 74 SARQIIELELPAKVDKDLAARISEIGKQLHPDLLLVLSGGRLNQTQMKAAWFDKLYQIGT 133 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + +A + + G+ +A+ E++KL+ Sbjct: 134 YVPVNHPEPKFFPRWMSARFARFGLKALPDAINFMCHSYEGNLLAASQEIEKLTLLSPPQ 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I+ ++++ I ++++ ++GK+ A + A L ++ Sbjct: 194 P-ISVTYLQETIIRHAHFTPFQLVDTLLEGKVNRAQRILAALRAEGTEPGMLAWTLCREL 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKIDH 315 + L ++ + + + + I ++ ++Q++L + + + ++D Sbjct: 253 EQLTELSLAM-RNGQPLGEHFSRLR--IWQSRQQLIQQALTRLPFAKLQQLWQLMAQLDD 309 Query: 316 R 316 Sbjct: 310 A 310 >gi|325955583|ref|YP_004239243.1| DNA polymerase III subunit delta [Weeksella virosa DSM 16922] gi|323438201|gb|ADX68665.1| DNA polymerase III, delta subunit [Weeksella virosa DSM 16922] Length = 336 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 101/264 (38%), Gaps = 16/264 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I EL +KN+ F+ ++ ++ ++ + + + Sbjct: 18 PIYFLAGEEPYYIDELTEALEKNVLTEDEKAFNQTIVYGQDV--DMEQLISLAKQYPMGA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSVLA 139 +K++I+++ + +D L + +++ I K + K +K + Sbjct: 76 EKQLIIVKEAQHLAREIDKLLPYAENPQSSTVLVFNFKGKTIDKRLKIAKTLQKLNA--- 132 Query: 140 ISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 Y + + + D I++ +L I +AK +L +G + NE++KL+ Sbjct: 133 ---YHEFKKIYESKIPDWIDQRVLKSGVKIDMKAKMLLAEFVGANLSRLDNEIEKLALII 189 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHG 253 + IT ++ I + E+ A I + + +F + + P + Sbjct: 190 GKGNTITPDQIERNIGISKDYNNFELRTAIINKDMPKIASIIHYFDKNPKENPIIVTISA 249 Query: 254 FLQKFQLLEKIHIIKECSNISFEK 277 FQ L +H +++ S + K Sbjct: 250 IFNLFQSLVILHTLEDKSPSNAAK 273 >gi|296134647|ref|YP_003641889.1| DNA polymerase III, delta subunit [Thiomonas intermedia K12] gi|295794769|gb|ADG29559.1| DNA polymerase III, delta subunit [Thiomonas intermedia K12] Length = 363 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 19/299 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L+ E ++ + D + + S SLF Sbjct: 19 LYVVYGDETLLVNEAVDAIRARARQQGFDERESHTVERGF---DWSHLLAGSREISLFGG 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 +++I I + + L + + + ++ + +A Sbjct: 76 RRLIELRIPGGKPGRDGGEALAALSGHLSPDVMAVVILPRLDAATQKSAWFSALSQGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSSY 194 + L I L ++ + L+A + G+ +A+ E++KL+ Sbjct: 136 VRVDSVELAQLPRWIAARLQRHGFTLPAGDAGRALTDFLVARVEGNLLAAHQEIEKLALL 195 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 C + V+ + + + ++ A + G + + D A + + Sbjct: 196 C-PPGPLDPDTVEQAVLNVARYSVFKLGEAVLGGDVARLRRMLDGLQAEGVAPVLVHWTL 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNKNLVRETLH 311 + +I + + + + I +K +L+ +L + L Sbjct: 255 ADDIRAWLRIR-----QGLDAGQALPALLRANRIWGVKEKLLERALPRLRTPDLERLLQ 308 >gi|255531157|ref|YP_003091529.1| DNA polymerase III subunit delta [Pedobacter heparinus DSM 2366] gi|255344141|gb|ACU03467.1| DNA polymerase III, delta subunit [Pedobacter heparinus DSM 2366] Length = 341 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 109/315 (34%), Gaps = 28/315 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + I ++I+ +++I F+ VL + +++T N + S Sbjct: 17 PIYLLHGEEPYYIDQIIHYMEEHILNDMEKGFNQTVLYGKDT--DMATIMNAAKRYPMMS 74 Query: 82 KKKII---------LIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130 ++I + K + + K + + I+++ K K + K Sbjct: 75 DYQLIVVKEAQDLKWAKETEGSSKQAEFVLNYFEKPLPSTILVLGYKYANFDKRKKIYKA 134 Query: 131 AEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 +K + D L IEE + I+ +A ++ LG D NE+ Sbjct: 135 IDKH----GVVFQSDLVRDYKLAQWIEELVKEKGYKIAPQASALMAEYLGADLSKIANEV 190 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMP 246 +KL ++ +I V+ I + + E+ A + + ++F + P Sbjct: 191 EKLLLNIGKETIIDTDIVQKNIGISKEYNVFELQKALAVKNVLKCNQIINYFGDNPKANP 250 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ F + K H + + + E + + + R ++ Sbjct: 251 MVMVMANLSAYFTKILKYHYLPNKGDAAKELGVN----PYFVKD---FETAARSYSLPKT 303 Query: 307 RETLHKIDHRIHLAR 321 + + + ++ Sbjct: 304 FDIISLLREYDLKSK 318 >gi|126664121|ref|ZP_01735114.1| hypothetical protein FBBAL38_10844 [Flavobacteria bacterium BAL38] gi|126623835|gb|EAZ94530.1| hypothetical protein FBBAL38_10844 [Flavobacteria bacterium BAL38] Length = 334 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 111/305 (36%), Gaps = 15/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F G + I +L ++N+ + F+ +L ++ + + Sbjct: 18 PIYFFMGEEPYYIDKLTEFIEQNVLQEHERDFNQSILYGRDVTM--EDVIGSAKRFPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKFTSVL 138 ++++++ + +D LE +N +++ + + K + K+ +K V Sbjct: 76 DRQVVIVREAQELSRTIDKLEAY-AENPQPTTVLVFAYKYKTLDKRKKVTKLLDKVGLVF 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 DN+ + D I+ L SI +A IL+ LG D NEL KL + Sbjct: 135 ESKKLYDNQ--VPDWIKRVLSGQGYSIEPKAAAILVEFLGTDLSKISNELDKLKIILPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGF-LQ 256 T + +++ I + E+ A + A + D F + K + G Sbjct: 193 HTFTPKDIEENIGFSKDYNNFELRKAIGEKDQLKAYKIIDHFSQNPKDNPIVVTTGLVFG 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F L + H +K+ S + K+++ + + R + V + + Sbjct: 253 FFSQLLQYHGLKDKSQFNAAKVLR--VNPYFVKD---YEVAFRNYPMKKVSAIVAALREI 307 Query: 317 IHLAR 321 ++ Sbjct: 308 DVKSK 312 >gi|269468933|gb|EEZ80517.1| DNA polymerase III, delta subunit [uncultured SUP05 cluster bacterium] Length = 339 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 124/325 (38%), Gaps = 19/325 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G++ LI + ++Q K D + ++ N + EI++ SLF Sbjct: 19 IYFVFGAEILLIEQSLSQINKFAKQAGFDEKTSFEIDGNF---NWDQIYAEISTPSLFCP 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KNNTLRKIAEKFTSV 137 K+II ++ K L +II + ++II + ++ + + K E+ V Sbjct: 76 KRIIECRLKTGKIGVKGSKALNDIIKTLPNDILLIISTGKLDLAQQKSKWFKALEQHGGV 135 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I + HL+ + + + E Q + G+ +AS E+QKL Sbjct: 136 --IQHWEVQSDHLVGWVANHMATLGLDSNPEIAQSIAFCTEGNLLASMQEIQKLQM-AYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D I Q D + I +I+ + G + + + + L ++ Sbjct: 193 DGKINTQEYLDQVNQQSKYTIYGLIDTALLGDGNQVLKIYETLIDDSAMPIQLSSSLYRE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKID 314 + + I + E ++Q + ++ I+ +L+ + +++ +L +ID Sbjct: 253 ISSIINMSIELQQV-KQVEAVLQNHR--VWNKRKPIISNALKRHSYQRLQKLLLSLGRID 309 Query: 315 HRIHLARKKKYLEKNIIFQTILYIA 339 I +++ + +L +A Sbjct: 310 RSIKGMDNLNVIDE--LRTLLLNLA 332 >gi|116074364|ref|ZP_01471626.1| hypothetical protein RS9916_37977 [Synechococcus sp. RS9916] gi|116069669|gb|EAU75421.1| hypothetical protein RS9916_37977 [Synechococcus sp. RS9916] Length = 334 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 111/326 (34%), Gaps = 26/326 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V +F+G D + + + + +L L+ + + + E + Sbjct: 2 PVHLFWGDDSAALERAVGKLIDQVVDPTWSSINLSRLDGADSSQALQAL-EEARTPPFGG 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--------- 128 +++L++ + + D + + +++ + K + LR Sbjct: 61 GDRLVLLQRSPFCNACPSDLADRFDNALDLIPDTSHLVLCNPA-KPDGRLRTTKALQQRI 119 Query: 129 ---KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + AE+ + AI + L++ + + +A L+ +G D Sbjct: 120 KAKQAAEQSFQLPAIW----DGAGQRQLVQRTASDLNLDLEPDAIDALIDTIGSDSARLS 175 Query: 186 NELQKLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 ELQKL+ + I+ V +I ++ + +A ++G++ AI D + + Sbjct: 176 AELQKLALHAASCGSTRISADAVATMIDGQATNALQ-VGDALLEGQVGEAISCLDALIDA 234 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 P+ ++ + + + ++++ I + P + ++++ L+ Sbjct: 235 GEPALRIVATLTGQIRGWLWVSLMEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPP 293 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 294 TRCLNLLGRLLEVEAALKRGAQPAAA 319 >gi|167749587|ref|ZP_02421714.1| hypothetical protein EUBSIR_00545 [Eubacterium siraeum DSM 15702] gi|167657441|gb|EDS01571.1| hypothetical protein EUBSIR_00545 [Eubacterium siraeum DSM 15702] Length = 360 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 19/332 (5%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YG ++ L+ ++ + +L+ L + T + I+S LF+ K Sbjct: 33 LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSMPLFADSKA 89 Query: 86 ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136 +LI +L EK ++ + + +II + ++KK N L K + Sbjct: 90 VLISDLDLEKFDDNGIETILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +LI + IS+ Q + D + E KL SY Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRADAQHIAELTLCDLSLASAETDKLCSYA- 208 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT + + + I + ++G A+++ D L K+ +L Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLLTQKIEPVVILAALSS 268 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313 + + + + S ++ + ++ ++ + + +R L + Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + ++ +TI+ ++ + Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKIRR 357 >gi|293571936|ref|ZP_06682950.1| DNA polymerase III, delta subunit [Enterococcus faecium E980] gi|291607954|gb|EFF37262.1| DNA polymerase III, delta subunit [Enterococcus faecium E980] Length = 344 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRAEIVKKIKLESEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V+ ++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + +R +++ L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|251796208|ref|YP_003010939.1| DNA polymerase III subunit delta [Paenibacillus sp. JDR-2] gi|247543834|gb|ACT00853.1| DNA polymerase III, delta subunit [Paenibacillus sp. JDR-2] Length = 349 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 119/324 (36%), Gaps = 21/324 (6%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 +E+ + +++ F ++ YG D+ I + + + +V + E Sbjct: 1 MEAKEALKEIKAGKF--RPAYVIYGKDRYRIGQFTETLTEAMFSPDERELGVVKFDTSET 58 Query: 64 QKNISTFWNEINSTSLFSKKKIILIEN----LSTEKKV------LDCLEEIIIKNICNH- 112 + E + F ++K++++ + + K+ D L+ + Sbjct: 59 LIEEAAL--EAETLPFFVERKLVIVRDSVVFAAGGKEGGKLDHKTDRLQHYLDIPSETTV 116 Query: 113 -IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 + II + ++ + L KI K L I+ + L + + +++++ EA Sbjct: 117 MLFIINAEKLDERRKLVKIL-KDRDAL-IAFQELDAAELRRWVVKRAEEQKRTMTAEAAD 174 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +LL G + E+ KL + E +I + + + T + +++A ++ Sbjct: 175 LLLVRTGANMQQLAIEVDKLCLHAGEGGVIGVKETELLTASTVEEDVFALVDAIASLQVD 234 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 ++ L L + + ++ +++ +I E + S +++ + + P Sbjct: 235 RSLKLYRALLVRREEPIKIAALIARQLRIMLQIK-ELEQNRYSPQQMAGQIG--LHPYAV 291 Query: 292 NILQESLRIWNKNLVRETLHKIDH 315 + E + + + L I Sbjct: 292 KLAAEKSQKFKVARLGALLSDIAD 315 >gi|119775716|ref|YP_928456.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119768216|gb|ABM00787.1| DNA polymerase III, delta subunit [Shewanella amazonensis SB2B] Length = 342 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 98/290 (33%), Gaps = 10/290 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G D LI Q + + + + NE + SLF+ + Sbjct: 19 YCLFGDDAWLIENARTQLLMAARQQGFEERISLEQDNGFNWND---LQNEWQALSLFASR 75 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140 +II + L ++ + + ++I++ ++ T K + +V + + Sbjct: 76 RIIELTLPQAKPGADGSAMLTSLMAQPNPDLLLILRGPKLAAEQTNSKWFKALDNVGIYL 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++ + + + +A+Q+L G+ +A+ +Q L+ + Sbjct: 136 PCNTPEGQQFFRWLDGRIAANRLMLDGDARQLLATLYEGNLLAAEQAVQLLAL-LAANRR 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+ + + D + ++ +A + + + A +L ++ Sbjct: 195 ISAEELSQYFDDQSRFNVFQLSDALLGNQQQRVAHILAQLKAEGTALPIVLWAVFRELAS 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++ S + K I ++ + + +L + + L Sbjct: 255 LLQLKTAM-VQRESLAPMWSKLR--IWDKRKPLYEAALSRLSLTQIEAML 301 >gi|261341261|ref|ZP_05969119.1| DNA polymerase III, delta subunit [Enterobacter cancerogenus ATCC 35316] gi|288316565|gb|EFC55503.1| DNA polymerase III, delta subunit [Enterobacter cancerogenus ATCC 35316] Length = 343 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 97/260 (37%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ I L+ + + L ++ + ++I++ N++ K Sbjct: 60 DWNALFSVCQAMSLFASRQTIQLLLPENGPNAAINEQLATLVSLLHSDLLLIVRGNKLTK 119 Query: 124 NNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + T+ + ++C + HL + + A Q+L G+ + Sbjct: 120 AQENAAWVTQLATNAVLVTCQTPEQAHLPKWVATRAKQHNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L +L+ D +T V+ + D ++A + K A+ + Sbjct: 180 ALAQALDRLAL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLAAKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R + E+++ + Sbjct: 239 EGSEPVILLRTLQRELLLLITLK--RQSAHAPLRSLFDKHR--VWQNRRAMTTEAVQRLS 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 HEQLRQAVQLLMRAELTLKQ 314 >gi|83746763|ref|ZP_00943811.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551] gi|207744310|ref|YP_002260702.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum IPO1609] gi|83726532|gb|EAP73662.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551] gi|206595715|emb|CAQ62642.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum IPO1609] Length = 358 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 121/338 (35%), Gaps = 24/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E ++ ++ ++ + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +++ V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++++ +++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L ++D ++ R+ + + +L +A + Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350 >gi|314937545|ref|ZP_07844873.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a04] gi|314941463|ref|ZP_07848352.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133C] gi|314949643|ref|ZP_07852964.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0082] gi|314951825|ref|ZP_07854863.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133A] gi|314992770|ref|ZP_07858174.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133B] gi|314996527|ref|ZP_07861565.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a01] gi|313589313|gb|EFR68158.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a01] gi|313592703|gb|EFR71548.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133B] gi|313595999|gb|EFR74844.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133A] gi|313599715|gb|EFR78558.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133C] gi|313643088|gb|EFS07668.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a04] gi|313643982|gb|EFS08562.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0082] Length = 348 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 23 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 80 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +++ +EN L+ EK + D L + + + + +++ + K + RK K Sbjct: 81 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 138 Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + I+ N+ + + +L + + A + L D ELQKL Sbjct: 139 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 198 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 199 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 258 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 259 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 315 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 316 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 348 >gi|73542517|ref|YP_297037.1| DNA polymerase III subunit delta [Ralstonia eutropha JMP134] gi|72119930|gb|AAZ62193.1| DNA polymerase III, delta subunit [Ralstonia eutropha JMP134] Length = 352 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 113/297 (38%), Gaps = 15/297 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E +++ ++ FS + E + S S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDRLRQTAREAG---FSERDVLVAERNFHWSQLVEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +KI+ I + K+ + L + + + ++++ + + + + Sbjct: 79 DRKIVELRIPSGKPGKEGGEALRAVAAQPSPDVVMLVTLPRLDFATSKSAWFQALEGAGV 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSS 193 +I ++ L + E L + Q+ + + A Q + + G+ +A+ E+QKL Sbjct: 139 SIKVDSVDRTRLPAWVGERLALQQQRVEGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +T V D + + + ++ A + G + + + + + +L Sbjct: 199 -LYPTGELTFDQVHDAVLNVARYDVFKLSEAMLGGDVPRLVRMLEGLRGEGEATVLVLWA 257 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++ ++L K+ + ++++ + + ++ ++ + + + L Sbjct: 258 LTEEIRVLSKVR-QGIAAGKPAAVLMRELR--VWGARERLVPQAAQRLTQGKLDAAL 311 >gi|257791406|ref|YP_003182012.1| DNA polymerase III, delta subunit [Eggerthella lenta DSM 2243] gi|257475303|gb|ACV55623.1| DNA polymerase III, delta subunit [Eggerthella lenta DSM 2243] Length = 328 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 108/324 (33%), Gaps = 12/324 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D ++ + + +S F+ + Q N+ S Sbjct: 16 PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 73 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ + KK + L + + ++ + + ++ KN L K I Sbjct: 74 PVRLVEVRAADKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 133 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C P + L + + ++++ A L+ +G D + +EL+K++ Sbjct: 134 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 193 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + E + D++ T + E ++A + ++ + HALL + + Sbjct: 194 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 251 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + N + + K +N + + R + +R + Sbjct: 252 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 307 Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344 + + + A TA + Sbjct: 308 KSGADPRSAFLDWVL---AVTARR 328 >gi|257896081|ref|ZP_05675734.1| DNA polymerase III subunit delta [Enterococcus faecium Com12] gi|293377497|ref|ZP_06623693.1| DNA polymerase III, delta subunit [Enterococcus faecium PC4.1] gi|257832646|gb|EEV59067.1| DNA polymerase III subunit delta [Enterococcus faecium Com12] gi|292643866|gb|EFF61980.1| DNA polymerase III, delta subunit [Enterococcus faecium PC4.1] Length = 344 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V+ ++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + +R +++ L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|251790540|ref|YP_003005261.1| DNA polymerase III subunit delta [Dickeya zeae Ech1591] gi|247539161|gb|ACT07782.1| DNA polymerase III, delta subunit [Dickeya zeae Ech1591] Length = 343 Score = 84.6 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 113/309 (36%), Gaps = 17/309 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L+ E I + H F+L + + ++ + Sbjct: 18 RGCYLLFGNEPLLLQESQDHIRTIARQQDFLEHFSFTL------DNNTDWEAIFSTCQAL 71 Query: 78 SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134 SLF+ ++ ++++ + + L ++ + ++I++ N++ K + Sbjct: 72 SLFASRQTLLLILPDAGPGAPAAEQLVKLATLLHSDILLIVRGNKLTKAQENSAWFKALS 131 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + C + L + + + + + + Q++ G+ +A L++LS Sbjct: 132 QHGVYVPCMTPEQEQLPRWVAQRAKSMKLELDEASSQLVCYCYEGNMLALVQALERLSL- 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T V+ + D ++A + GK A + LL Sbjct: 191 LYPDGKLTLPRVEQAVNDAAHFTPYHWLDALLGGKSKRAWHILQQLRLEDCEPVILLRTV 250 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ LL ++ ++ + + I +R +L ++L+ + +++ + + Sbjct: 251 QRELLLLLQLKRRMAT--TPLRTLLDQHK--IWQNRRPLLTQALQRLSAVQLQQAITLLS 306 Query: 315 HRIHLARKK 323 ++ Sbjct: 307 RLEITLKQN 315 >gi|304403911|ref|ZP_07385573.1| DNA polymerase III, delta subunit [Paenibacillus curdlanolyticus YK9] gi|304346889|gb|EFM12721.1| DNA polymerase III, delta subunit [Paenibacillus curdlanolyticus YK9] Length = 351 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 117/334 (35%), Gaps = 20/334 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75 N V++ YGSD+ I + N + +V + E E Sbjct: 11 NSGSVRPVYVAYGSDRYRIEQFANLMADKLFKPDERELGIVKFDTSETAI--EEAAAEAE 68 Query: 76 STSLFSKKKIILIENL---------STEKKVLDCLEEIII--KNICNHIIIIKSNEIKKN 124 + F ++K+I+I + + E K+ +E ++ + + +I+ +K Sbjct: 69 TMPFFVERKLIMIRDASVLAAAGANAKEGKIEHRVERMLEYIDSPSDTTVILFLVYAEKL 128 Query: 125 NTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + RK+ +K I+ + L + + ++++A +L+A G Sbjct: 129 DERRKLVKKLKDQNALIAFNELDGPELRRWVVRRASEQNRVMTEDAADLLIARTGNRLQQ 188 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E KL + D I Q V+ + T + +I+A + A+ L L Sbjct: 189 LSQETDKLCLHAGVDGTIDTQSVELLTASTVEEDVFALIDAIASVQTSKALKLYRDLLQR 248 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + + L + +KE S + ++ + P + + E ++ Sbjct: 249 REEPIKIAALLAV---QLRLMLQVKELSGQQYSPQQMASQLGVHPFRVKLASEKASKFSI 305 Query: 304 NLVRETLHKIDHRIHLAR-KKKYLEKNIIFQTIL 336 + + L ++ R K ++K + + L Sbjct: 306 AGLSKQLGEL--AELDYRMKTGQIDKTLGVELFL 337 >gi|295398767|ref|ZP_06808776.1| DNA-directed DNA polymerase III delta subunit [Aerococcus viridans ATCC 11563] gi|294972981|gb|EFG48799.1| DNA-directed DNA polymerase III delta subunit [Aerococcus viridans ATCC 11563] Length = 344 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 117/303 (38%), Gaps = 18/303 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + LI + + D ++ ++ + +++ E N+ S F+ Sbjct: 17 PIYVLQGPETYLINRFLTAIESQYLQ--EDANAMNYMSFDMEEDSLADVMVEANTISFFN 74 Query: 82 KKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130 + ++IL+ + K+ L E + + +++I + + + K Sbjct: 75 QPRLILMRQPAFLTGSQKKNAIKQDDASLLEYLDNPADDVVLVIVADYESLDGRKKIVKQ 134 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + S + + + D ++ + +++EA + L S E+ K Sbjct: 135 LKKKATFVDTSVMAEPQ--VKDYMQRYVASEGVDMTREAMALFLKRTNFQLTQSIREMDK 192 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y ++ I ++ V ++ + I + + ++ A+ L +A K A+ Sbjct: 193 LILYVGDEKRINQRDVDLLVTPSLDDNIFHLTDHIMRQDSAAALRLYRELIAQKNQPIAI 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L F+L +I I + + + + + P + + +S+ ++ NL+ Sbjct: 253 LGLLQSNFRLYTQI-IQLKKAGYDQGSMAETIG--VHPYRIKMAGQSIHPYSPNLLMVGY 309 Query: 311 HKI 313 K+ Sbjct: 310 MKL 312 >gi|170078176|ref|YP_001734814.1| DNA polymerase III subunit delta [Synechococcus sp. PCC 7002] gi|169885845|gb|ACA99558.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7002] Length = 326 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 131/328 (39%), Gaps = 17/328 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V+ F+G D I + ++Q K+++ F+ + + + I +E+ + Sbjct: 3 VYFFWGEDDFAIAQAVDQIKQSVLDPAWLSFNFQTYDGSKEESIIDAL-DEVMTPPFGMG 61 Query: 83 KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFTS 136 ++I + S +L L + + +++ S + K + L+ K ++ Sbjct: 62 GRLIWLNEATLCQSCSDSLLQELHRTLPVIPESSHLLMTSRK-KPDKRLKSTKFIQEHAK 120 Query: 137 V---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V I + L D ++ + ++ + A ++L +G D NEL+KL Sbjct: 121 VWEFSPIPPWQTEA--LADRVKATARELGVNLDRPATELLGEAVGNDTRRLWNELEKLKI 178 Query: 194 YCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y +T+ ++ ++ T+ ++ + A +G AI L LA P+ ++ Sbjct: 179 YQGSRTQPLTKVEIQQLVAATNQNSLQ-LCEAIREGNGGLAIQLVGELLAQNEPALRIVA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + +F++ I ++ E ++ I K P + L++ + + +TL Sbjct: 238 TLIGQFRMWTIIKVMIEAGERD-DQAIAKLADLKNPKRLYFLKKEISRLRGQQLLKTLPI 296 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + + K+ + + I+ IL + Q Sbjct: 297 LLE-LEAGLKQGAIAEEILPTKILELCQ 323 >gi|329767197|ref|ZP_08258724.1| DNA polymerase III [Gemella haemolysans M341] gi|328836864|gb|EGF86511.1| DNA polymerase III [Gemella haemolysans M341] Length = 326 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 117/298 (39%), Gaps = 16/298 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + I + K D F+ V +N E I T E S+ LF Sbjct: 3 NIYVIYGENFEAINDYEKSLAKKYLKEL-DEFNYVKINMHE--NTIETLVYECRSSGLFG 59 Query: 82 KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +K+++ EN L+ KK+ +D L + ++I+K + K ++ + I + Sbjct: 60 NEKVVVAENCNFLLAKPKKIKVEHNVDALMNYLENINEEVVLILKIPD-KIDSRKKIIKK 118 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + N+ + + I +++ + ISK + L+ D + EL+KL Sbjct: 119 IKEAGEVKEFSNFNEKEISEYIVKTVAVHDMKISKVDAEFLVNYTRLDFANIKKELEKLL 178 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 YC E +IT ++ + + + + N ++ + + K LL Sbjct: 179 LYCDEKKIITRDDIELLATRSLEYDVFSLTNELFGKNYAKLRVVYNSLVLKKEEPIFLLS 238 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + ++ K+ ++ + + + P + + + +R ++ + + +TL Sbjct: 239 LISGQLRMYYKVKVLLNEHYSQKDIAKELA---VHPYRVQLAAQGIRNYSVDKIMKTL 293 >gi|332878404|ref|ZP_08446127.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683669|gb|EGJ56543.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 336 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 105/307 (34%), Gaps = 16/307 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + N +K++ F +VL ++ + + + + Sbjct: 18 PIYFLMGEEPYFIDVVANYLEKHLLEEDQKGFDQLVLYGQDVT--VPAIIDYARRFPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++I+I+ + +D L + + +++ K ++ L K K + Sbjct: 76 ERQLIIIKEAQNLRASIDQLVPYVENPTASTVLVFCYKYEKLDARKKLLKSLGKNQDCVV 135 Query: 140 ISC---YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + Y + + + SI +A Q+L+ LG D NE+ KL+ Sbjct: 136 MESKKLY--ENQVISSFLPDVFKKKHLSIQPKATQMLVDFLGNDLSRIENEVNKLALIVP 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254 + +T ++ I + E+ +A + F + P L Sbjct: 194 ANTEVTPDIIEKNIGISKEFNNFELKSAFATNDKVKIARIIKHFAENPKDNPLVVTLTVL 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 FQ L H + + S+ + + K ++ L + + + V + + Sbjct: 254 YGFFQKLLIYHSLTDVSDKN----VMAATKATFFDVKD-LHSAAQHYPMKKVSAIMAGLR 308 Query: 315 HRIHLAR 321 ++ Sbjct: 309 EIDVKSK 315 >gi|257878128|ref|ZP_05657781.1| DNA polymerase III subunit delta [Enterococcus faecium 1,230,933] gi|257881087|ref|ZP_05660740.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,502] gi|257889673|ref|ZP_05669326.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,410] gi|257892390|ref|ZP_05672043.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408] gi|260559176|ref|ZP_05831362.1| DNA polymerase III subunit delta [Enterococcus faecium C68] gi|293563908|ref|ZP_06678331.1| DNA polymerase III, delta subunit [Enterococcus faecium E1162] gi|294623509|ref|ZP_06702357.1| DNA polymerase III, delta subunit [Enterococcus faecium U0317] gi|257812356|gb|EEV41114.1| DNA polymerase III subunit delta [Enterococcus faecium 1,230,933] gi|257816745|gb|EEV44073.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,502] gi|257826033|gb|EEV52659.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,410] gi|257828769|gb|EEV55376.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408] gi|260074933|gb|EEW63249.1| DNA polymerase III subunit delta [Enterococcus faecium C68] gi|291597103|gb|EFF28306.1| DNA polymerase III, delta subunit [Enterococcus faecium U0317] gi|291604141|gb|EFF33652.1| DNA polymerase III, delta subunit [Enterococcus faecium E1162] Length = 344 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +++ +EN L+ EK + D L + + + + +++ + K + RK K Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 134 Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + I+ N+ + + +L + + A + L D ELQKL Sbjct: 135 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|227535189|ref|ZP_03965238.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187234|gb|EEI67301.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 347 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L + ++ + + Q + N+ S F Sbjct: 17 PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 + ++I++ L+ EK L L+ + + +++I + ++ + L K Sbjct: 74 DYREVVIDDPYFLTGEKNADKVDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K ++ + ++ + ++ Q +I A L+ G E++K Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +Y + +T V+ ++ + +++ ++ A+ L LA + L Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+LL ++ ++ S I + P + + + + Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLAIAY 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336 + A K ++K + F+ + Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333 >gi|296103395|ref|YP_003613541.1| DNA polymerase III subunit delta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057854|gb|ADF62592.1| DNA polymerase III subunit delta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 343 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 103/293 (35%), Gaps = 15/293 (5%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI--ENLS 92 E ++ + + D V L+ + + ++ + SLF+ ++ I I Sbjct: 32 QESLDAVRHAAAAQGFDEHHTVQLDN---NTDWNALFSLCQAMSLFASRQTIQILLPENG 88 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYPDNKIHLM 151 + + L ++ + ++I++ N++ K + T + ++C + HL Sbjct: 89 PNAAINEQLATLVSLLHSDLLLIVRGNKLTKAQENAAWFTQLATHAVLVTCQTPEQTHLP 148 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + + A Q+L G+ +A L +L+ D +T V+ + Sbjct: 149 KWVAARAKQNNLQLDDAANQLLCYCYEGNLLALAQALDRLAL-LWPDGKLTLPRVEQAVN 207 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 D ++A + K ++ + LL ++ +L + Sbjct: 208 DAAHFTPFHWVDALLMAKSKRSLHILQQLRLEGSEPVILLRTLQRELLMLITL------K 261 Query: 272 NISFEKIIQKT-EKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 S ++ +K+ I +R + E++ + +R+ + + ++ Sbjct: 262 RQSAHTPLRSLFDKHRIWQNRRAMTTEAINRLSHEQLRQAVQLLMRAELTLKQ 314 >gi|87123266|ref|ZP_01079117.1| hypothetical protein RS9917_05385 [Synechococcus sp. RS9917] gi|86168986|gb|EAQ70242.1| hypothetical protein RS9917_05385 [Synechococcus sp. RS9917] Length = 326 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 110/322 (34%), Gaps = 18/322 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D + IN ++ +L L+ E + + E + Sbjct: 2 PIHLLWGDDSAALERAINSLIADVVDPAWSSINLSRLDGAETGQALQAL-EEARTPPFGG 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNI----CNHIIIIKS-----NEIKKNNTLRKIAE 132 +++L++ L + N +++ + ++ L+K+ + Sbjct: 61 GGRVVLLQRSPFCNACPSELADRFESAPALIPDNSHLLLTNPSKPDGRLRTTKALQKLVK 120 Query: 133 KF---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + D L+E + + ++ +A L+ +G D ELQ Sbjct: 121 AGLATEQGFQLPAVWDGAGQ-RQLVERTAAELKLQLAPDAIDALIEAIGNDSARLSMELQ 179 Query: 190 KLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL+ + I+ + +I ++ + +A ++G + AI D + + P+ Sbjct: 180 KLALHAESSGANTISATAIAQLIDGQASNALQ-VGDALLEGAVGEAISRLDGLIEAGEPA 238 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 ++ + + + ++++ I + P + ++++ L+ + Sbjct: 239 LRIVATLTGQIRGWLWVSLLEQQGERDVGVIAKAAGIG-NPKRIYVMRKQLKGRPPSRCL 297 Query: 308 ETLHKIDHRIHLARKKKYLEKN 329 + L ++ ++ + Sbjct: 298 KLLGRLLDVEAALKRGAHPGDA 319 >gi|146310832|ref|YP_001175906.1| DNA polymerase III subunit delta [Enterobacter sp. 638] gi|145317708|gb|ABP59855.1| DNA polymerase III, delta subunit [Enterobacter sp. 638] Length = 343 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 101/288 (35%), Gaps = 14/288 (4%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEK 95 + Q + H F L + + T ++ + SLF+ ++ +I + Sbjct: 38 VRQAAASQGFDEHHTFQL------DNSTDWQTIFSLCQAMSLFASRQTLLIQLPENGPNA 91 Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLI 154 + + L ++ + ++I++ N++ K + T + ++C + L + Sbjct: 92 AINEQLATLVSLLHPDLLLIVRGNKLTKAQENAAWFTQLATHSVQVTCQTPEQAQLSKWV 151 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + A Q+L G+ +A L +LS D +T V+ + D Sbjct: 152 AVRAKQLNLQLDDAANQLLCYCYEGNLLALAQALDRLSL-LWPDGKLTLPRVEQAVNDAA 210 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274 ++A + K A+ + LL ++ LL + ++ +N Sbjct: 211 HFTPFHWVDALLAAKSKRALHILQQLRLEGSEPVILLRTIQRELLLLNTLK--RQSANTP 268 Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + K + +R + E++ + +R+ + + ++ Sbjct: 269 LRALFDKHR--VWQNRRAMTTEAVNRLSHEQLRQAIQLLTRAELTLKQ 314 >gi|225012828|ref|ZP_03703262.1| DNA polymerase III, delta subunit [Flavobacteria bacterium MS024-2A] gi|225003102|gb|EEG41078.1| DNA polymerase III, delta subunit [Flavobacteria bacterium MS024-2A] Length = 333 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 103/325 (31%), Gaps = 20/325 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G++ I + + + F V + S + + Sbjct: 18 PFYLLSGTESYYIDAITDALVDQLVTEQSRDFDFTVFYGKD--AVTSEIIETAKRYPMVA 75 Query: 82 KKKIILIENLSTEKKVL-DCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFTSVLA 139 +++I+ D + I++ + K+ L +A + VL Sbjct: 76 SYNLVIIKEAQAMHHSCWDDFILYLENPTPQTIVVFCFKNKEFKSKKLYNVAARVGEVLT 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + +N+ L I + +IS +A +L +G + A N+L KL Sbjct: 136 VKPLFENQ--LSKWISDEAKKLNITISPDAAMLLSEYIGSNLSALHNQLLKLKLVVKNGD 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT H++ + + E+ A G++ A + + P L Sbjct: 194 TITPDHIEYYVGISKEFNSFELQKAIGLGQLSKAFQIVQHLNRNLKSHPMVLTLSTLHNY 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 FQ L + + +N+ I Q + ++ + + + + Sbjct: 254 FQKLLLLKGLSNSANLPRALGIN----PYFIRD---YQTAAARFSMKQITQAMRYVLDAD 306 Query: 318 HLAR----KKKYLEKNIIFQTILYI 338 ++ K ++ I+ + +L + Sbjct: 307 LKSKGIIGKSSSPQQ-IMEELLLKL 330 >gi|294669474|ref|ZP_06734541.1| hypothetical protein NEIELOOT_01372 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308387|gb|EFE49630.1| hypothetical protein NEIELOOT_01372 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 333 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E +++ + + + + + + NS LF+ Sbjct: 17 PLYVIHGEEDLLRVEALDKLRAAAKQQGYLNREVYTADNAF---DWNEMLASANSMGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K + L + + + ++ +++K T K + Sbjct: 74 DLKLMEIHIPNGKPGKNGGEALLSLAENLPDDTVTVVMLPKLEKAQTQAKWFAAMARQGV 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L I+ L I +A + + G+ +A++ E+ KL+ Sbjct: 134 VLEAKAVSGNALPAWIKGRLKNAGLDIEADALTLFAERVEGNLLAAKQEIDKLALLHPSG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +I+ + + + + ++ +A ++G + L + A LL + Sbjct: 194 SIISVADAELAVANVARFDVFQLASAWMKGDAVRTLHLLEGLEAEGEEPVLLLWAVAEDI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 254 RTLIRLAAAF-KQGQSVQSVRNSLR 277 >gi|332883663|gb|EGK03943.1| DNA polymerase III, delta subunit [Dysgonomonas mossii DSM 22836] Length = 335 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 9/242 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++F G + I EL + + + F+ +L +E N++ S + Sbjct: 17 RPVYLFMGDEPYYIDELTDMLTETVLPEEERDFNQSILYGMET--NVTAVITMARSYPMM 74 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSVL 138 S ++I+I+ K+ + LE + + + I+++ + K L AE Sbjct: 75 SDHQLIVIKEAQNLSKI-EELEVYVKNPLKSTILVLNYKGGSLDKRKKL--YAEIDKMGA 131 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197 + + I +L SI +++ Q+L LG D NE+ KL Sbjct: 132 IFESKKIPEYKIPAFITSYILSKGLSIDQKSAQMLSDYLGNDLSKLTNEIAKLLIAIQPG 191 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 + IT +++ I + E++NA I I+ +AD+F + K + L Sbjct: 192 QMRITADLIEENIGISKDFNNFELLNAIINKNIFKVNQIADYFEKNPKNNPMIMTMSVLF 251 Query: 257 KF 258 F Sbjct: 252 NF 253 >gi|257898717|ref|ZP_05678370.1| DNA polymerase III subunit delta [Enterococcus faecium Com15] gi|257836629|gb|EEV61703.1| DNA polymerase III subunit delta [Enterococcus faecium Com15] Length = 344 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRAEIVKKIKLEGGDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V+ ++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + +R +++ L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|254416533|ref|ZP_05030285.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC 7420] gi|196176737|gb|EDX71749.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC 7420] Length = 326 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 40/311 (12%), Positives = 117/311 (37%), Gaps = 16/311 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G + + + IN+ ++++ F+ + + I N+ + Sbjct: 2 PIYLYWGDNDFALTQAINELRQSVLDPNWLSFNYDRIPPDQPDAVIQGL-NQAMTPPFGM 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 + + + + + + VL L + I++ S +K L+K A Sbjct: 61 GGRFVWLVDTNVCQTCSENVLAELGRTLPAIPPESILLFTSHNRPDGRLKSTKLLQKHA- 119 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K I + + L+ ++ ++ A ++L +G + NEL KL Sbjct: 120 KIREFPLIPPWKTEE--LVQQVKSYAQTTGVKLTPLAAELLADAVGNNTRQLTNELDKLR 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y ++ + E+ V ++ T ++ + + ++G + A+ L + + ++ Sbjct: 178 LYAGDETTSLDERAVSALVTTTTHNSLQ-LAGSILKGDTHKALGLIADLINNNEHPLRIV 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F+ + ++ K+I + P + L++ ++ + + + TL Sbjct: 237 ATLVGQFRTWLWVKLMMSEGEKDI-KVIANAAEVGNPKRIYFLKKDVQHLSLDQLMATLR 295 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 296 VLLELEVSLKR 306 >gi|317490546|ref|ZP_07949023.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|316910361|gb|EFV31993.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] Length = 325 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 108/324 (33%), Gaps = 12/324 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D ++ + + +S F+ + Q N+ S Sbjct: 13 PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 70 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ + KK + L + + ++ + + ++ KN L K I Sbjct: 71 PVRLVEVRAADKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 130 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C P + L + + ++++ A L+ +G D + +EL+K++ Sbjct: 131 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 190 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + E + D++ T + E ++A + ++ + HALL + + Sbjct: 191 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + N + + K +N + + R + +R + Sbjct: 249 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 304 Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344 + + + A TA + Sbjct: 305 KSGADPRSAFLDWVL---AVTARR 325 >gi|260364646|ref|ZP_05777245.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus K5030] gi|308111013|gb|EFO48553.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus K5030] Length = 298 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 102/266 (38%), Gaps = 10/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117 A++ + + ++ + SLFS +++I +E + L+ + + +++I Sbjct: 12 AVDASLDWNQVYDCFQALSLFSSRQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVII 71 Query: 118 SNEIKKNNTLRKIAEKFTSVLA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 ++ K K K + +SC + L ++ +++ Q+L Sbjct: 72 GTKLTKAQENAKWF-KALNAKGDWVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQ 130 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 G+ A L+KL+ D +T +++ + + I+A + GK A Sbjct: 131 WHEGNLFALSQSLEKLAL-LYPDGELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQR 189 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + A + + L+ ++F L +H ++ + + ++ +K + KR + Sbjct: 190 ILRQLEAEGIETVILIRSVQKEFNQLLSMH--QDLTQMPISQVFEKYR--VWQNKRPLYN 245 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321 +L + + + + + A+ Sbjct: 246 AALMRLSASRICALISLLAQAEIKAK 271 >gi|86148571|ref|ZP_01066856.1| DNA polymerase III subunit delta [Vibrio sp. MED222] gi|85833637|gb|EAQ51810.1| DNA polymerase III subunit delta [Vibrio sp. MED222] Length = 341 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ L+ E +K F A++ + + ++ + SLFS Sbjct: 18 NVYLIFGNEPLLLQESREAIQKTAKEQG---FEERHRFAIDSSLDWNQVYDCTQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138 +++I +E + L + + ++I+ ++ K K + ++ Sbjct: 75 SRQLIELELPESGVNAAIAKELLALSEHIHSDILLILVGTKLTKAQESAKWFKALSNQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC + L ++ S EA Q+L G+ A L+KL+ D Sbjct: 135 WISCLTPDVSRLPQFVQTRCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + +A + GK A + A + LL ++ Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 LL + + ++ + ++ +K I K+ + +L + + + + Sbjct: 254 ALLLQ--MQQQMKQMPIAQVFEKHR--IWQSKKPLYNAALTRVSISQLHSLFALLTQVEL 309 Query: 319 LAR 321 + + Sbjct: 310 MTK 312 >gi|333030681|ref|ZP_08458742.1| DNA polymerase III, delta subunit [Bacteroides coprosuis DSM 18011] gi|332741278|gb|EGJ71760.1| DNA polymerase III, delta subunit [Bacteroides coprosuis DSM 18011] Length = 339 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 13/279 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I + + ++ + F+L VL +I ++ST N + S Sbjct: 22 PVYYLMGEESYYIDLISDTLEEKVLTEEEKEFNLTVLYGADI--DVSTIINAAKRYPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++++++ + + D L + K + + I++I K ++ L E + Sbjct: 80 EHQVVIVKEAQQIRNM-DQLSYYLQKPLLSTILVICHKHGKLDGRKKLGS--EIAKIGVL 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-D 198 L+ I+ + Q +I +A +L +G D +EL KL Sbjct: 137 FESKALKDRDLIGFIDSYIQRKQFTIEPKASAMLADFIGADLSRLTSELDKLILTTGGKQ 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL-Q 256 IT V+ I + E+ NA + ++ + +F + K + G L Sbjct: 197 KRITPDLVEKNIGISKSYNNFELRNALLDRDVFRVNQIVHYFEENPKTNPLPMTLGLLFS 256 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 F L + + S+ +++ ++ ++ Sbjct: 257 YFSNLMLAYYSPDKSDRGIAEMLSLRTP---WQAKDYIK 292 >gi|313668812|ref|YP_004049096.1| DNA polymerase III, delta subunit [Neisseria lactamica ST-640] gi|313006274|emb|CBN87737.1| putative DNA polymerase III, delta subunit [Neisseria lactamica 020-06] Length = 332 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 96/293 (32%), Gaps = 11/293 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ +G ++ L E ++ + + + +A + + S LF+ Sbjct: 17 LYVIHGEEELLRIEALDALRAAAKEQGYLNREVYTADASF---DWNELLQTAGSAGLFAD 73 Query: 83 KKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 K++ I N K + L++ + + + ++ +++K K Sbjct: 74 LKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGEV 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 134 WEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKGH 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T + + + ++ A ++G + L D LL + + Sbjct: 194 TLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDIR 253 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311 L ++ S + + + + L +++ + + + L Sbjct: 254 TLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302 >gi|295096607|emb|CBK85697.1| DNA polymerase III, delta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 343 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ I I + + L ++ + ++I++ N++ K Sbjct: 60 DWNAIFSLCQAMSLFASRQTIQILLPENGPNAAINEQLAMLVSLLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + S + ++C + HL + + + A Q+L G+ + Sbjct: 120 AQENAAWFTRLAPSAVLVTCQTPEQAHLPKWVAARAKQHNLQLDEAASQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L +L+ D +T V+ + D ++A + K A+ + Sbjct: 180 ALAQALDRLAL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLSAKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R + E++ + Sbjct: 239 EGSEPVILLRTLQRELLLLNNLK--RQSAHTPLRALFDKHR--VWQNRRAMTTEAINRLS 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 + +R+ + + ++ Sbjct: 295 QEQLRQAVQLLMRAELTLKQ 314 >gi|239631590|ref|ZP_04674621.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526055|gb|EEQ65056.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 347 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L + ++ + + Q + N+ S F Sbjct: 17 PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 + ++I++ L+ EK L L+ + + +++I + ++ + L K Sbjct: 74 DYREVVIDDPYFLTGEKNADKVDHDLVGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K ++ + ++ + ++ Q +I A L+ G E++K Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +Y + +T V+ ++ + +++ ++ A+ L LA + L Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+LL ++ ++ S I + P + + + + Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336 + A K ++K + F+ + Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333 >gi|261207710|ref|ZP_05922395.1| DNA polymerase III subunit delta [Enterococcus faecium TC 6] gi|289566286|ref|ZP_06446717.1| DNA polymerase III, delta subunit [Enterococcus faecium D344SRF] gi|294615860|ref|ZP_06695702.1| DNA polymerase III, delta subunit [Enterococcus faecium E1636] gi|260078093|gb|EEW65799.1| DNA polymerase III subunit delta [Enterococcus faecium TC 6] gi|289161926|gb|EFD09795.1| DNA polymerase III, delta subunit [Enterococcus faecium D344SRF] gi|291591246|gb|EFF22913.1| DNA polymerase III, delta subunit [Enterococcus faecium E1636] Length = 344 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 133/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K ++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|307151185|ref|YP_003886569.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7822] gi|306981413|gb|ADN13294.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7822] Length = 326 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 120/318 (37%), Gaps = 16/318 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++F+G D I + + + ++++ F+ L + I N+ + S Sbjct: 2 PIYLFWGEDDFAITQEVERLRQDVLDPSWIQFNYDKLAGDAAENVIEGL-NQAMTPVFGS 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135 +++ + + + +L L+ + ++ S++ K + L+ K+ E++ Sbjct: 61 GGRLVWLVETTIFGQCSEGLLSELQRTLPHIPEESHLLFTSSK-KPDKRLKSTKLVEEYA 119 Query: 136 SV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 V I + + ++ ++ ++ A +L ++G + +EL KLS Sbjct: 120 KVQEFALIPPWKTEE--IVQRVQSVAHSKGVKLTAAAVDLLAESVGNNTRQLWSELDKLS 177 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y ++V + + + ++ A +G A+ L ++ P+ ++ Sbjct: 178 VY--GQGKPINENVVASLVNVNTQNSLQLATAIREGDAAKALSLVADLISRNEPALRIVA 235 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + +F+ + + E EK I + P + L++ ++ + + + TL Sbjct: 236 TLVGQFRTWAMVKLKIEAGEKD-EKAIATAAEVGNPKRIYFLRKEVQAFKGSQLLATLPL 294 Query: 313 IDHRIHLARKKKYLEKNI 330 + ++ + Sbjct: 295 LFELELSLKRGADPLAAL 312 >gi|294617295|ref|ZP_06696936.1| DNA polymerase III, delta subunit [Enterococcus faecium E1679] gi|291596452|gb|EFF27704.1| DNA polymerase III, delta subunit [Enterococcus faecium E1679] Length = 344 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 133/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + I++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTILVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K ++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|329770384|ref|ZP_08261766.1| DNA polymerase III [Gemella sanguinis M325] gi|328836507|gb|EGF86167.1| DNA polymerase III [Gemella sanguinis M325] Length = 326 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 122/301 (40%), Gaps = 22/301 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISIT---YHDPFSLVVLNALEIQKNISTFWNEINSTS 78 ++I YG + FE IN F+K ++ D F+ + N + I E S+ Sbjct: 3 NIYIVYGEN----FEAINDFEKKVAQNYLKTLDEFNYIKFNMNDTT--IENLVYECRSSG 56 Query: 79 LFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 LF +K+++ EN L+ KK+ ++ L + I+I+KSNE K ++ + Sbjct: 57 LFGNEKVVVAENCNFLLAKPKKLKVDHNIEVLSNYLENISSEVILILKSNE-KIDSRKKI 115 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + N+ + D I E++ ISKE Q L+ D + E++ Sbjct: 116 VKKIKEIGEIKEFSNFNETQIADYIVEAVKEKNLKISKENAQFLVNYTRLDFANIKREIE 175 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL YC +I ++ + + + + N + + + K Sbjct: 176 KLVLYCQGKSVIERNDIELLAVRSLEYDVFSLTNELFSRNYIKLREVYNSLVLKKEEPIF 235 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L + +L K+ ++ + + S ++I ++ I P + + + +R ++ + + Sbjct: 236 LFSLISGQLRLYYKVKVLLD-EHYSQKQIAKELG--IHPYRVQLAAQGIRNYSVEKIMRS 292 Query: 310 L 310 L Sbjct: 293 L 293 >gi|167571239|ref|ZP_02364113.1| DNA polymerase III subunit delta [Burkholderia oklahomensis C6786] Length = 333 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF Sbjct: 19 LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K D L+ + + + ++++ + + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALLNAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKVDPVDRAQLPNWIGQRLALQGQRVAPGEDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + ++D + + + ++ A + G + D +L Sbjct: 195 LYPAGTLTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L KI + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLKIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|302335765|ref|YP_003800972.1| DNA polymerase III, delta subunit [Olsenella uli DSM 7084] gi|301319605|gb|ADK68092.1| DNA polymerase III, delta subunit [Olsenella uli DSM 7084] Length = 322 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 95/256 (37%), Gaps = 9/256 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN--ISTFWNEINSTSL 79 ++ GSD+ + + + K ++ + L+ + + + +N+ + Sbjct: 10 PAYLVVGSDELKSRQAVTRLKGHLDAGL----AAFNLDERAAKADMVPADIVASLNTLPV 65 Query: 80 FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +++L+EN K + + + ++ + ++ + K+ L K + Sbjct: 66 GNGFRLVLVENAERLPKAASEAIVAYLRDPNPACVLCLVASSLAKSTRLYKAVKSAGERT 125 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + C P + L + + +EA + L++ +G +++ L++ C E Sbjct: 126 IVDCTPKKRWELAPTVGRMAARYGMRMGEEAARELVSRVGESTTLLDTQVKTLAALCRET 185 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+ + T + + ++A A++L + K ALL + Sbjct: 186 GAITLSDVEAHVARTAEVKPWDFLDAVSARDGRKALVLYT--MMRKPSQVALLSLLTGRL 243 Query: 259 QLLEKIHIIKECSNIS 274 + L + E S Sbjct: 244 RELICARALDERGEGS 259 >gi|261400389|ref|ZP_05986514.1| DNA polymerase III, delta subunit [Neisseria lactamica ATCC 23970] gi|269209827|gb|EEZ76282.1| DNA polymerase III, delta subunit [Neisseria lactamica ATCC 23970] Length = 332 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 96/294 (32%), Gaps = 11/294 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + ++ + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTVDNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T + + + ++ A ++G + L D LL + Sbjct: 193 HTLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDI 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311 + L ++ S + + + + L +++ + + + L Sbjct: 253 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302 >gi|257887585|ref|ZP_05667238.1| DNA polymerase III subunit delta [Enterococcus faecium 1,141,733] gi|257823639|gb|EEV50571.1| DNA polymerase III subunit delta [Enterococcus faecium 1,141,733] Length = 344 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V+ ++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + +R +++ L+ + + Sbjct: 255 ILLSQLRLFLQAKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + K +EK + FQ + +N Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344 >gi|229815192|ref|ZP_04445528.1| hypothetical protein COLINT_02238 [Collinsella intestinalis DSM 13280] gi|229809202|gb|EEP44968.1| hypothetical protein COLINT_02238 [Collinsella intestinalis DSM 13280] Length = 323 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 115/293 (39%), Gaps = 15/293 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSL 79 ++ GSD+ I + K + + F+ L+ ++ K+ +N+ + Sbjct: 6 PGYLVVGSDELKSSHTIEKMKARLDASGMAAFN---LDERDMAKDPQIDDIIASLNTFPM 62 Query: 80 FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S+ +++++ N K V + L E + ++ + + KN L K K + Sbjct: 63 GSEFRLVILRNCDKLPKAVSEPLVEYFANPSPTTVCLVVATTLAKNTRLYKAIAKLGAKA 122 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC P L + + K++ A + L++ G + NEL+KL+S + Sbjct: 123 VISCAPMKAYELPPRVAKMAQAHGKAMGIPAAEALVSRAGENMRMLDNELKKLASMI-DG 181 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLASKMPSHALLHGFLQK 257 IT V+ + T + E++NA + ++ L S++ +LL L++ Sbjct: 182 PEITLADVERHVMRTAEVKPWELLNAVAARDLTRSLELLKLQPAKSEVRIWSLLVTRLRE 241 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + + + ++ +Q +N + R W + + E L Sbjct: 242 LIIAKSLDARGQAGQLASALGVQT------WQVKNHASWA-RRWKMDELLEAL 287 >gi|53720544|ref|YP_109530.1| DNA polymerase III subunit delta [Burkholderia pseudomallei K96243] gi|53725691|ref|YP_103998.1| DNA polymerase III subunit delta [Burkholderia mallei ATCC 23344] gi|67643537|ref|ZP_00442282.1| DNA polymerase III, delta subunit [Burkholderia mallei GB8 horse 4] gi|76811330|ref|YP_334820.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 1710b] gi|121601131|ref|YP_991718.1| DNA polymerase III subunit delta [Burkholderia mallei SAVP1] gi|124384588|ref|YP_001027211.1| DNA polymerase III subunit delta [Burkholderia mallei NCTC 10229] gi|126440520|ref|YP_001060424.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 668] gi|126448597|ref|YP_001082163.1| DNA polymerase III subunit delta [Burkholderia mallei NCTC 10247] gi|126454183|ref|YP_001067685.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 1106a] gi|134280284|ref|ZP_01766995.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 305] gi|166998530|ref|ZP_02264388.1| DNA polymerase III, delta subunit [Burkholderia mallei PRL-20] gi|167912539|ref|ZP_02499630.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 112] gi|226196843|ref|ZP_03792422.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei Pakistan 9] gi|237813815|ref|YP_002898266.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei MSHR346] gi|242316710|ref|ZP_04815726.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106b] gi|254178765|ref|ZP_04885419.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 10399] gi|254180645|ref|ZP_04887243.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1655] gi|254190922|ref|ZP_04897428.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254199042|ref|ZP_04905457.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei S13] gi|254202717|ref|ZP_04909080.1| DNA polymerase III, delta subunit [Burkholderia mallei FMH] gi|254208058|ref|ZP_04914408.1| DNA polymerase III, delta subunit [Burkholderia mallei JHU] gi|254258135|ref|ZP_04949189.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710a] gi|254299269|ref|ZP_04966719.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 406e] gi|52210958|emb|CAH36946.1| putative DNA polymerase III [Burkholderia pseudomallei K96243] gi|52429114|gb|AAU49707.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 23344] gi|76580783|gb|ABA50258.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710b] gi|121229941|gb|ABM52459.1| DNA polymerase III, delta subunit [Burkholderia mallei SAVP1] gi|124292608|gb|ABN01877.1| DNA polymerase III, delta subunit [Burkholderia mallei NCTC 10229] gi|126220013|gb|ABN83519.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 668] gi|126227825|gb|ABN91365.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106a] gi|126241467|gb|ABO04560.1| DNA polymerase III, delta subunit [Burkholderia mallei NCTC 10247] gi|134248291|gb|EBA48374.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 305] gi|147746964|gb|EDK54041.1| DNA polymerase III, delta subunit [Burkholderia mallei FMH] gi|147751952|gb|EDK59019.1| DNA polymerase III, delta subunit [Burkholderia mallei JHU] gi|157808973|gb|EDO86143.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 406e] gi|157938596|gb|EDO94266.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160694679|gb|EDP84687.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 10399] gi|169656872|gb|EDS88269.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei S13] gi|184211184|gb|EDU08227.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1655] gi|225931103|gb|EEH27111.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei Pakistan 9] gi|237504072|gb|ACQ96390.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei MSHR346] gi|238524905|gb|EEP88335.1| DNA polymerase III, delta subunit [Burkholderia mallei GB8 horse 4] gi|242139949|gb|EES26351.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106b] gi|243065215|gb|EES47401.1| DNA polymerase III, delta subunit [Burkholderia mallei PRL-20] gi|254216824|gb|EET06208.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710a] Length = 362 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 45/349 (12%), Positives = 129/349 (36%), Gaps = 27/349 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHALAFAA 311 Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351 ++D ++ AR + + + +FQ + +A+ A + +R Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARAAGPGGDAPRR 360 >gi|325133778|gb|EGC56434.1| DNA polymerase III, delta subunit [Neisseria meningitidis M13399] Length = 332 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 86/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNGLR 276 >gi|15613900|ref|NP_242203.1| DNA polymerase III subunit delta [Bacillus halodurans C-125] gi|10173953|dbj|BAB05056.1| BH1337 [Bacillus halodurans C-125] Length = 342 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 103/272 (37%), Gaps = 17/272 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ YG++ L+ +LI ++ + ++ I E + F Sbjct: 17 PVYFMYGTELFLMEDLIQDILSVTLSDEERDMNVSSYSLTDV--PIEAALEEAETVPFFG 74 Query: 82 KKKIILIENLSTEKKV-------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 K+++++++ + + LE+ I+ + +++I + ++ + + K+ + Sbjct: 75 SKRVVILKDAALFTSQKLDVEHDVKRLEQYILNPVPETVLLIMAPYEKLDERKKITKLIK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K + L + P ++ + Q + ++A + LL G +E+ KL+ Sbjct: 135 KES--LVLEAKPLDEGEAKAWLSSLASELQVEMDEKAIETLLGMTGLRLTQLASEMNKLA 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y E +I + V ++ T I ++I+ I + + A+ L L K LL Sbjct: 193 LYVGEGGIIRSEDVTLLVAKTLDQNIFDLIDFAINQRTHQALSLYHELLKQKEEPLKLLA 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 ++F +I + Q + Sbjct: 253 LLTRQF----RIMYQVKELGRRGYTPNQMAKP 280 >gi|255525336|ref|ZP_05392276.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7] gi|296188204|ref|ZP_06856596.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7] gi|255511008|gb|EET87308.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7] gi|296047330|gb|EFG86772.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7] Length = 340 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 103/271 (38%), Gaps = 14/271 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + ++F G D+ L+ + IN + + V + ++ N + Sbjct: 17 NNCYLFCGIDEQLMKDGINSIINKVLDKTFMDLNYVKFDGSTLESF-EPVVNACETLPFM 75 Query: 81 SKKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAE 132 S KK++L+ V + + E I+I ++ K++ +KI + Sbjct: 76 SDKKVVLVYRANFFQEDKNDNVFNRIYEYASNLPDYCILIFY--DVFKSKRDKPGKKIYK 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQKL 191 + L I+ K I + ++ + + NE++KL Sbjct: 134 LDKRACVVKADKIKGQQLEGKIKSFFEARGKQIGRIELKVFSTLMDENNLNIIENEVEKL 193 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y E IT++ +K++ ++ I +++N Q K+ AI + + + +L Sbjct: 194 CCYTYEKS-ITKEDIKELFLKSNDDDIFDLVNPISQKKVKEAIEVLNELIYRGEKIPYIL 252 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 + ++F L ++ ++ E + + I+++ Sbjct: 253 NMIERQFNRLFRVKMLLENK-KNKQDIMKEL 282 >gi|172056812|ref|YP_001813272.1| DNA polymerase III, delta subunit [Exiguobacterium sibiricum 255-15] gi|171989333|gb|ACB60255.1| DNA polymerase III, delta subunit [Exiguobacterium sibiricum 255-15] Length = 333 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 112/304 (36%), Gaps = 23/304 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG+++ L+ E + K F + ++ + + + +E + S Sbjct: 13 NLYLLYGTERHLLEEWEREIVKAALPDGER-FDYMKIDLND--QPLDAVLDEAETVPFLS 69 Query: 82 KKKIILIENL-----STEKKV--LDCLEEIIIKNICNHII--IIKSNEIKKNNTLRKIAE 132 ++++ + + +KK ++ L E I++ ++ I+++ ++ + T+ K Sbjct: 70 DYRVVIAKPATFLTGAKDKKTHNVERLAEYIVQPADYAVVVLIVEAEKLDERKTIVKRL- 128 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + L + +++ + + A + L+ G EL KL Sbjct: 129 -KDRAVILEAKKPTTEELFRFVMDAVNDKGYRMERPAIERLIFLTGEMWATLTRELDKLM 187 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y + I + V ++ T + ++ + ++ ++ AI L ALL Sbjct: 188 LYAGDHPTIELEDVNLLVPRTLEDNVFQLTDYLMKRQLEPAIRLIRDLEKQGQEVLALLG 247 Query: 253 GFLQKFQLLEKIHIIKE---CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 ++++++ + E K+ P + ++ + + + + Sbjct: 248 LMARQYRMMLLSKRLAEQGYGERQIASKVGA------HPYAIKLALQAGKRFTFAQLEQA 301 Query: 310 LHKI 313 L I Sbjct: 302 LVAI 305 >gi|187930049|ref|YP_001900536.1| DNA polymerase III subunit delta [Ralstonia pickettii 12J] gi|187726939|gb|ACD28104.1| DNA polymerase III, delta subunit [Ralstonia pickettii 12J] Length = 358 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 122/341 (35%), Gaps = 24/341 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E ++ ++ FS + ++E + S S SLF Sbjct: 22 PLYVVHGDEHLLALETVDALRQAARAQG---FSEREVMSVERGFSWSRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTLTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL ++T V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++ + ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L K+D ++ R+ + + +L +A + + Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353 >gi|325831512|ref|ZP_08164766.1| DNA polymerase III, delta subunit [Eggerthella sp. HGA1] gi|325486766|gb|EGC89214.1| DNA polymerase III, delta subunit [Eggerthella sp. HGA1] Length = 325 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 109/324 (33%), Gaps = 12/324 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D ++ + + +S F+ + Q N+ S Sbjct: 13 PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 70 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ + + KK + L + + ++ + + ++ KN L K I Sbjct: 71 PVRLVEVRAVDKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 130 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C P + L + + ++++ A L+ +G D + +EL+K++ Sbjct: 131 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 190 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + E + D++ T + E ++A + ++ + HALL + + Sbjct: 191 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + N + + K +N + + R + +R + Sbjct: 249 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 304 Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344 + + + A TA + Sbjct: 305 KSGADPRSAFLDWVL---AVTARR 325 >gi|322613221|gb|EFY10164.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621289|gb|EFY18146.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623709|gb|EFY20547.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628981|gb|EFY25760.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631703|gb|EFY28457.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637561|gb|EFY34263.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641901|gb|EFY38531.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646745|gb|EFY43251.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651446|gb|EFY47826.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653103|gb|EFY49437.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658823|gb|EFY55078.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664907|gb|EFY61100.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668909|gb|EFY65061.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670585|gb|EFY66718.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675326|gb|EFY71402.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682203|gb|EFY78228.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684968|gb|EFY80965.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193974|gb|EFZ79176.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197934|gb|EFZ83056.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202019|gb|EFZ87079.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207152|gb|EFZ92105.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213971|gb|EFZ98738.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214321|gb|EFZ99072.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219274|gb|EGA03765.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225515|gb|EGA09745.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231074|gb|EGA15190.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234094|gb|EGA18183.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238211|gb|EGA22269.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242555|gb|EGA26579.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248468|gb|EGA32402.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251317|gb|EGA35189.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259245|gb|EGA42888.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261652|gb|EGA45227.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264834|gb|EGA48335.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272329|gb|EGA55736.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 343 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 97/260 (37%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL F ++ LL + ++ +++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTFQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|220910039|ref|YP_002485350.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7425] gi|219866650|gb|ACL46989.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7425] Length = 328 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 115/302 (38%), Gaps = 20/302 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ F+G D + + + Q + + F+ ++ + + N+ + + Sbjct: 2 PVYFFWGEDDYRLNQAVQQLRDRLLDPVWASFNYDKISPEQPDAILQGL-NQSMTPPFGA 60 Query: 82 KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNEIKKNNT------LRKIA 131 ++I + N + ++ +L LE + + +++ S K + L+K Sbjct: 61 ADRLIWLVNTTLGQRCSEELLAELERTLPHLPSSSHLLLTSPS-KPDGRSKAVKLLQKYG 119 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 E L I + L+ + ++ S++ +A +L+ ++G D +EL+KL Sbjct: 120 EIKEFSL-IPAWKTE--DLLQVARQAAQQIGVSLAPDALDLLVQSVGNDTRQLYSELEKL 176 Query: 192 SSYCLEDIL---ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 Y +T V ++ T ++ + A G A+ L +A P Sbjct: 177 QLYAARQPQPQPLTRLEVSTLVRTTSQNSLQ-LAEAIRLGHTGKALELLADLIAQNEPPL 235 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L+ ++F+ + ++ E + I + E P + LQ+ ++ + ++ Sbjct: 236 RLVATLTRQFRTWLWVKVLTEAGERDLQTIARLAEVG-NPKRIYFLQKEVQPLSSAQLQR 294 Query: 309 TL 310 L Sbjct: 295 VL 296 >gi|153953527|ref|YP_001394292.1| DNA polymerase III subunit delta [Clostridium kluyveri DSM 555] gi|219854149|ref|YP_002471271.1| hypothetical protein CKR_0806 [Clostridium kluyveri NBRC 12016] gi|146346408|gb|EDK32944.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567873|dbj|BAH05857.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 344 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 18/268 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSK 82 ++F G D+ +I E I + + T F+ + + ++ + N + S Sbjct: 20 YLFCGIDEFIIKENIRKLVQKSIKTDFADFNYIKFDGSSLESFDP--VINACETLPFMSD 77 Query: 83 KKIILIENLS------TEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 KK++L+ + K L ++ + + I+I+ K + + K Sbjct: 78 KKVVLVYRAAFIGDEQNGKSKLSYEFNSIQNYLKNVPEHCILILYYLFKNKRDKISKKIY 137 Query: 133 KFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQ 189 L I D L + ++E K+I K +I + + + NE++ Sbjct: 138 GLDKYLCIV-RTDKVKGYQLENKVQEFFDERVKNIKKVDLRIFCSLMNDNNLNMIENEVE 196 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL Y I + +K + + I +++NA KI +A+ + + + Sbjct: 197 KLCCYTYGRD-IEREDIKKVFLKSSEEDIFDLVNAISNKKIKDALHILNELIYGGAKISY 255 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEK 277 +L ++F +L KI + E + E Sbjct: 256 ILSMIERQFNILLKIKLYLEYGSTKKEA 283 >gi|194476915|ref|YP_002049094.1| hypothetical protein PCC_0445 [Paulinella chromatophora] gi|171191922|gb|ACB42884.1| hypothetical protein PCC_0445 [Paulinella chromatophora] Length = 322 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 17/243 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I++G D+ I + I K + +L + + + I E + Sbjct: 2 PVYIYWGDDEAAIIQSIKTLIKEVIHPLWLEVNLSRFDGNQNSQTIQAL-EECITPPFGD 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 ++ +I N ++ + LE + +I+ S + ++ N L+KIA Sbjct: 61 GGRVTIINNNPFCNQCSSRLSNQLETSLKLIPEQCYLILISLDKPKAFLQTNKLLKKIAI 120 Query: 133 KFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + +L A+ YP+ K L+ +++ I+ +A ++L +G D + +NE++KL Sbjct: 121 EQKFMLPALWDYPNQKE----LVRQTIHKTGLRINNQALEVLSTAVGKDSMNLKNEIEKL 176 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + Y +IT + V +I + EI A I+G+I AI L D L ++ Sbjct: 177 ALYSGH-KIITAEAVVALIYLQSTNNL-EIGIALIKGQIGEAISLIDILLDKNELGLRIV 234 Query: 252 HGF 254 Sbjct: 235 SAL 237 >gi|268609923|ref|ZP_06143650.1| DNA polymerase III subunit delta [Ruminococcus flavefaciens FD-1] Length = 366 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 95/285 (33%), Gaps = 31/285 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + + +L Q K ++ F+L L + + S ++ + + S Sbjct: 20 NIYYIYGQNIPEVDKLTKQIIKAAVGD-NEEFALTRLEGRYL--DFSELYDMVQMMPMMS 76 Query: 82 KKKIILIENLSTEK-----------KVLDCLEEIIIKNICNHIIIIKSNEIK-------- 122 ILI + + E+ + L E I ++I + Sbjct: 77 DYNCILINDYNCERPRENMAGLRADDITKKLLEAIKDVPPQTVVIFNVTGFEIAIKYDYK 136 Query: 123 -KNNTLR----KIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 K N ++ K+A+ A+ C + I ++ IS A + L Sbjct: 137 AKQNVIKDKNKKLADFAAKHGTAVECPVKTAQDMAKDIASAVSARGGFISINAARELAEL 196 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 D + +NE+ KL SY IT + + D++ + + +A A Sbjct: 197 CQCDTLTIKNEIDKLCSYA-GSKEITSELIGDMVHHESGVTAYNLASAVAASDRKTAFEA 255 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281 D +A K A+L F L+ + +++ Sbjct: 256 MDELMADKDNRGAVLAAITSAF--LDMYRVQAARRCGKHADAVKQ 298 >gi|91217486|ref|ZP_01254445.1| hypothetical protein P700755_19752 [Psychroflexus torquis ATCC 700755] gi|91184371|gb|EAS70755.1| hypothetical protein P700755_19752 [Psychroflexus torquis ATCC 700755] Length = 335 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 107/305 (35%), Gaps = 21/305 (6%) Query: 22 FVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + + + + + + F+ +L E+ I + + Sbjct: 18 PIYFLVGEKETFFVDLIAEKIEATVLTEDEKAFNQSILYGKEVT--IDDVIGQAKQYPMM 75 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAEKFTSVL 138 S ++I++ + K +D L + N I++ +K ++ + K+ +K Sbjct: 76 SDYRVIIVREAQSLLKNIDTLSSYVEHPQQNTILVFCVKYKKMDGRQKVTKLLKKSAVYF 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 DN+ + I E+L +I+ +A ++L+ LG + EL+KL + + Sbjct: 136 ETKPMYDNQ--VPQWISETLSTSGYTIAPKASEMLVEFLGNNLSHIHKELEKLQNILSKG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT + V++ I + E+ A A + +F + P + Sbjct: 194 SKITPELVEENIGISKDFNNFELTKAIGIKDEMKAQRIVAYFAQNSKNHPIILTMTQLNS 253 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F L + H +K+ S + ++ ++ ++ K Sbjct: 254 FFNKLLRYHALKDKSQYVASAALG--VNPFF----------VKDYSFAAQNYSMKKASQA 301 Query: 317 IHLAR 321 I L R Sbjct: 302 IALIR 306 >gi|167564097|ref|ZP_02357013.1| DNA polymerase III subunit delta [Burkholderia oklahomensis EO147] Length = 325 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF Sbjct: 19 LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K D L+ + + + ++++ + + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALLNAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKVDPVDRAQLPNWIGQRLALQGQRVAPGEDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + ++D + + + ++ A + G + D +L Sbjct: 195 LYPAGTLTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L KI + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLKIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|50120246|ref|YP_049413.1| DNA polymerase III subunit delta [Pectobacterium atrosepticum SCRI1043] gi|49610772|emb|CAG74217.1| DNA polymerase III, delta subunit [Pectobacterium atrosepticum SCRI1043] Length = 341 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 99/252 (39%), Gaps = 9/252 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ +G+D L+ E ++ K+ + + FS + L++ + ++ + SL Sbjct: 18 RGCYLVFGTDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTDWDAVFSTCQALSL 73 Query: 80 FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 F+ ++ ++L+ + + L ++ + ++I++ +++ K + Sbjct: 74 FASRQSLLLLLPENGPNAAMSENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQD 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ISC + L + + + ++ ++A Q++ G+ +A L++L+ Sbjct: 134 SVYISCLTPEQGQLPRWVAQRAKAMKLTLDEQATQLICYCYEGNLLALSQALERLAL-LY 192 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T V++ + D ++A + GK A + LL + Sbjct: 193 PDGKLTLPRVENAVNDAAHFTPFHWLDALLAGKGKRAWHILQQLKQEDCEPVILLRTLQR 252 Query: 257 KFQLLEKIHIIK 268 + L + Sbjct: 253 ELLQLLALKRRM 264 >gi|229916357|ref|YP_002885003.1| DNA polymerase III, delta subunit [Exiguobacterium sp. AT1b] gi|229467786|gb|ACQ69558.1| DNA polymerase III, delta subunit [Exiguobacterium sp. AT1b] Length = 339 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 131/323 (40%), Gaps = 20/323 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++K L+ + K + + D F ++ L+ E + + +E + FS+ Sbjct: 20 VYVLHGTEKYLLETWEREIVKAANPS-GDQFDVMQLDLQETSLDTA--LDEAETVPFFSE 76 Query: 83 KKIILIENL-------STEKKVLDCLEEIIIKNICNHII--IIKSNEIKKNNTLRK-IAE 132 + ++++N +K +D L E +++ ++ I++S ++ + + K + E Sbjct: 77 YRTVIVKNAQFLTGAKEKQKHNVDRLAEYVVQPATYSVLVLIVESEKLDERKKIVKRLKE 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + A ++ LM + ++L Q+ + + + LL D EL+KL Sbjct: 137 RAIVLEAKKP---SQNELMRYVNDALSREQQKMERSTMERLLFLCQDDWGKLVRELEKLQ 193 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y I + V D++ T + ++ ++ + A+ L LL Sbjct: 194 LYAGTGATIPIEIVNDLVPRTLEDNVFQLSELLVKRQADAALRLVRDLEKQGQELIGLLG 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++++ + + + ++I K P + ++ R +++ + L Sbjct: 254 LLARQYRNM-YLSKQLTEAGYGEKQIASKIGA--HPYTIKLATQASRGFSEAQLARALTL 310 Query: 313 IDHRIHLARKKKYLEKNIIFQTI 335 I A K +K I+F T+ Sbjct: 311 IADAD-EAMKTGRGDKQIVFDTL 332 >gi|257884749|ref|ZP_05664402.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,501] gi|257820587|gb|EEV47735.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,501] Length = 344 Score = 83.1 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 121/301 (40%), Gaps = 18/301 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 +++ +EN L+ EK + D L + + + + +++ + K + RK K Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 134 Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + I+ N+ + + +L + + A + L D ELQKL Sbjct: 135 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 I 313 + Sbjct: 312 L 312 >gi|148981394|ref|ZP_01816390.1| DNA polymerase III subunit delta [Vibrionales bacterium SWAT-3] gi|145960886|gb|EDK26216.1| DNA polymerase III subunit delta [Vibrionales bacterium SWAT-3] Length = 341 Score = 83.1 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 115/317 (36%), Gaps = 12/317 (3%) Query: 9 FIQKSTKNLFLS-HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 F + + L V++ +G++ L+ E +K F A++ + Sbjct: 4 FADRLPEQLAKQLSNVYLIFGNEPLLLQESREAIQKAAKQQG---FEERHRFAIDNSMDW 60 Query: 68 STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + ++ + SLFS ++II +E + L I + ++I+ ++ K Sbjct: 61 NQVYDCTQALSLFSSRQIIELELPESGVNAAIAKELLAISEHIHSDILLILVGTKLTKAQ 120 Query: 126 TLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K + ++ +SC + L ++ S EA Q+L G+ A Sbjct: 121 ENAKWFKALSNKGHWVSCLTPDVSRLPQFVQARCRQVGLSPDPEAIQMLAQWHEGNLFAL 180 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L+KL+ D +T +++ + + +A + GK A + A Sbjct: 181 TQSLEKLAL-QYPDGKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEG 239 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + LL ++ LL + + ++ + ++ +K I K+ + +L + + Sbjct: 240 VEPVILLRSVQRELALLLQ--MQQQMKLMPIGQVFEKHR--IWQSKKPLYNAALTRVSIS 295 Query: 305 LVRETLHKIDHRIHLAR 321 + + + + Sbjct: 296 QLHSLFALLTQAELITK 312 >gi|254479241|ref|ZP_05092585.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM 12653] gi|214034810|gb|EEB75540.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM 12653] Length = 338 Score = 83.1 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 128/312 (41%), Gaps = 19/312 (6%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F++ K +++FYG ++ L+ + + + K + + + + +V+ ++ + Sbjct: 5 EFVESIKKGQIA--PLYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYV 62 Query: 68 STFWNEINSTSLFSKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKS 118 + FS KI++++N + K++ D + +++ N ++++ Sbjct: 63 EAIIENCETLPFFSNYKIVVVKNEEEQLSKIGDKELKRLTDYFKNMVLGNTSLVVVVVSG 122 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 +I L K EK +V+ P+ ++ L K +K+ + L+ N+ Sbjct: 123 EKIDSRKKLYKFMEKEAAVVEFKKLTPEEAVNYAGY---FLKKHGKKAAKKDVEYLVKNI 179 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G D + NEL+K+ +Y + + + ++++ T + ++NA K A Sbjct: 180 GTDLYSIVNELEKVIAYSEGE-TLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 L+ +L ++ +L+ K+ + +F+K + I + + Sbjct: 239 YALLSKGEVPLIILTMIARQIRLIAKLKSL---EGKAFDKKSIASYLGIPFFAVDDIVRQ 295 Query: 298 LRIWNKNLVRET 309 +++ + + + Sbjct: 296 SKLFTREDLYKA 307 >gi|168236640|ref|ZP_02661698.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736664|ref|YP_002113764.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712166|gb|ACF91387.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290304|gb|EDY29660.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 343 Score = 83.1 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ +++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|312867267|ref|ZP_07727477.1| DNA polymerase III, delta subunit [Streptococcus parasanguinis F0405] gi|311097396|gb|EFQ55630.1| DNA polymerase III, delta subunit [Streptococcus parasanguinis F0405] Length = 344 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 111/309 (35%), Gaps = 33/309 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G L K I D F + + E++ + + S Sbjct: 17 PILVLTGEDVGQFEWLKKDILKKIGYDPSDLNYSYFDMKEASYAEVELD-------LVSL 69 Query: 78 SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +KI+++++L + ++ + D E + + ++I + ++ L Sbjct: 70 PFFADEKIVILDHLLDLTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129 Query: 128 RKIAEKFTSV--LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 K+ ++ + AI + L ++ LL G D S+ Sbjct: 130 VKLLKRDAQIIEAAIP----KEQDLKRYFASQAQELGLQFEGDSLDQLLLKSGYDFGESQ 185 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L L +Y ED IT + +++++ + I ++ ++ +I A L Sbjct: 186 KNLALLQAYK-EDGQITLEEIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGE 244 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIW 301 L+ L +F++ ++ I E S +I+ + + P + R Sbjct: 245 DEIKLIAILLSQFRMFSQVKIFSE-EGQSESQIVASLSDLSGRKVNPYQVKFALRDSRRL 303 Query: 302 NKNLVRETL 310 + + +++ + Sbjct: 304 SLSFLKQAM 312 >gi|300088587|ref|YP_003759109.1| DNA polymerase III subunit delta [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528320|gb|ADJ26788.1| DNA polymerase III, delta subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 336 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 100/276 (36%), Gaps = 29/276 (10%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D + + + K + + VL+ + N +N+ + Sbjct: 3 YILAGPDDFSLKARLAEIKAGLGDPQMLETATSVLDGDRLNPNDLRLA--LNTVPFLAPA 60 Query: 84 KIILIENL---------STEKK--------------VLDCLEEIIIKNICNHIIIIKSNE 120 +++++ L S K + D I+ ++++++ Sbjct: 61 RLVIVSGLLARFKPSGESGSKATKSKKKPVDTESSLLKDLAAAIMGSPPSTVLVLVENGA 120 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + K N L K + + +K L + + + I+ A +L +G D Sbjct: 121 V-KTNPLFKEIQSGVKLEEFP--QPSKPALKEWLGRRVTECGGHITPPAINLLAQYVGAD 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + E++KL+ Y ITE V+ + ++ I +++A + + +A+ + Sbjct: 178 LWTAAAEVEKLTLYAGNRP-ITEDDVRLLTGNSQEASIFNLVDAVFEQRPKDAMAALESL 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 + + + +L ++ +L+ ++ +K + Sbjct: 237 KSGGVSAGYILAMIARQLRLVIQVKDLKARKEKDTD 272 >gi|134300345|ref|YP_001113841.1| DNA polymerase III subunit delta [Desulfotomaculum reducens MI-1] gi|134053045|gb|ABO51016.1| DNA polymerase III, delta subunit [Desulfotomaculum reducens MI-1] Length = 346 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 50/338 (14%), Positives = 124/338 (36%), Gaps = 30/338 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG ++ L + + +FK+ + D F+L +L+ E +I T + + + Sbjct: 18 PVYLFYGEEEYLKEKAVEKFKEFLLPQAAD-FNLDLLDGEE--ADIDTVISFAENMPFMA 74 Query: 82 KKKIILIENLS--TEKKVLDC------------LEEIIIKNICNHIIIIKSNE-IKKNNT 126 ++++++++N + K + L + + ++ + E + + Sbjct: 75 ERRLVIVKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTCLVFVAKEAVDRRKK 134 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASR 185 K E I ++ + + + K+I A + ++ G + + Sbjct: 135 TYK--EISAKGQVIDFKMLKPSEMITWVNQIVKGTGKTIEPSAARAIVEANGKLGLLNLK 192 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ KL SY + IT V ++ I +++ + G A+ L+ K Sbjct: 193 NEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKALNGIRELLSLKE 252 Query: 246 PSHALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L ++ +I + E ++ +K + +K+ + +R Sbjct: 253 QPTKILALLARQL----RIALQAEALLREGSPEREVARKMGIHDFVIKKAL--TQIRRGG 306 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 ++ L +I +K + I ++ Q Sbjct: 307 SQRMKWALQEIATIDAAIKKGQRDFLPAIETMLIQFGQ 344 >gi|254523100|ref|ZP_05135155.1| DNA polymerase III, delta subunit [Stenotrophomonas sp. SKA14] gi|219720691|gb|EED39216.1| DNA polymerase III, delta subunit [Stenotrophomonas sp. SKA14] Length = 345 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 12/283 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 19 PVYLIAGPETLRVLEAADAIRARARGAGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 76 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + + +++I +NE K + K AE + Sbjct: 77 ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITANEWSKAHQ-GKWAEAVNRIGV 135 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +S + L D IE L A Q L + G+ +A+ E+ KL+ Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + ++ AT G+ + + AL+ +++ Sbjct: 196 P-LDVERMESLVADAARYDVFRLLEATFSGQPPAVLRMLAGLRGEGEAVAALMPMVIREL 254 Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + N++ E + I ++ + +L+ Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293 >gi|260062813|ref|YP_003195893.1| hypothetical protein RB2501_14524 [Robiginitalea biformata HTCC2501] gi|88784381|gb|EAR15551.1| hypothetical protein RB2501_14524 [Robiginitalea biformata HTCC2501] Length = 334 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 104/284 (36%), Gaps = 11/284 (3%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + +N L+ V+ G + I + +N+ F+ VL Sbjct: 1 MEEVKA---LIGDIRNGKLA-PVYFLMGDEPYYIDRISEFIGENVLTEEERGFNQTVLYG 56 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + + + ++ +++++ + ++ L E + I++I K Sbjct: 57 KDTGVDE--IVGHAKRYPMMAEYQVVIVREAQHLSRTIEQLAEYAANPQPSTILVICYKY 114 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L K K SV+ + + D I LL IS +A +L+ +G Sbjct: 115 KTLDRRKKLIKTLRKGESVV-FESKKLYENQVADWIRRVLLGSDYRISHKASALLVEYMG 173 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D NEL KL + IT + V++ I + E+ A I A + Sbjct: 174 TDLSRISNELDKLKLVLPKGAEITPETVEEHIGISKDFNNFELKKAIAGRDIPKATRIIA 233 Query: 239 FFLASKMPSHALLHGFLQK--FQLLEKIHIIKECSNISFEKIIQ 280 +F + + +L L F L + H + + S + ++ Sbjct: 234 YFSQNPKENPFVLTVALLHTFFSQLLQYHGLSDHSPKNVASALR 277 >gi|325127786|gb|EGC50694.1| DNA polymerase III, delta subunit [Neisseria meningitidis N1568] Length = 332 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSN 272 + L ++ + + Sbjct: 253 RTLIRLAAVLKQGQ 266 >gi|323499958|ref|ZP_08104916.1| DNA polymerase III subunit delta [Vibrio sinaloensis DSM 21326] gi|323314975|gb|EGA68028.1| DNA polymerase III subunit delta [Vibrio sinaloensis DSM 21326] Length = 337 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 107/304 (35%), Gaps = 11/304 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H ++ +GS+ L+ E ++ + ++A + + ++ + SLF Sbjct: 17 HPNYLIFGSEPLLLQESRQAIQQAALAQGFEERHRFAIDASF---DWNVVYDCCQAMSLF 73 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 S +++I +E + L + + I+++ +++ K K + + Sbjct: 74 SARQLIELELPESGVNAAIAKELLALSGMLHSDVILVVIGSKLTKAQENAKWFKALASQG 133 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C + L ++ EA Q+L G+ A L+KL+ Sbjct: 134 CWVNCLSPDIQRLPQFVQTRCRALNLKPDPEAVQMLAQWHEGNLFALVQSLEKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D + +++ + + I+A + GK + + A + L ++ Sbjct: 193 DGELNLIRLEESLSRHNHFTAFHWIDALLAGKANRSQRIMRQLEAEGVEVVILARTVQKE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L + + + ++ + + KR + +L + + V + L + Sbjct: 253 LSQLLAMLQMMQTE--PMNRVFEAYR--VWQSKRPLYSAALSRLSISKVSQLLQLLAKIE 308 Query: 318 HLAR 321 L + Sbjct: 309 ILTK 312 >gi|291615304|ref|YP_003525461.1| DNA polymerase III, subunit delta [Sideroxydans lithotrophicus ES-1] gi|291585416|gb|ADE13074.1| DNA polymerase III, delta subunit [Sideroxydans lithotrophicus ES-1] Length = 337 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 97/284 (34%), Gaps = 14/284 (4%) Query: 68 STFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 + N S SLFS +K+I I + + L+E + + +I + Sbjct: 61 AELCNSAQSMSLFSSRKVIDLRIPSGKPGVEGAQALQEHCEALDPDTLTLISLPRLDGTA 120 Query: 126 TLRKIAEK-FTSVLAISCYPDNK--IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K I D L I + +S + L + G+ + Sbjct: 121 MKSKWFTALEQHGTVIG--ADEVLLAALPAWIAARMKRQGQSADADTLSFLAQRVEGNLL 178 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A+ E+QKL+ ++ VKD + D + ++ A + G + + + A Sbjct: 179 AAFQEIQKLAL-LFPVGPLSFDQVKDSVMDVARYDVFKLSEAMLAGDAERYVRILEGLRA 237 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + +L + + L K+ + + + ++ + +++ +++ ++R + Sbjct: 238 EGTATVLILWAVAEDIRTLAKVSRAVQQNG-NLSGALRDAR--VWGIRQKLVERAVRRFT 294 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 L + L + L + ++ +L + + Sbjct: 295 PFFAERALRQAAQIDKLVK---GLRQGDVWDELLQLGVRCARAG 335 >gi|70726329|ref|YP_253243.1| DNA polymerase III subunit delta [Staphylococcus haemolyticus JCSC1435] gi|68447053|dbj|BAE04637.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 324 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 121/304 (39%), Gaps = 18/304 (5%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + + YG L+ + N+ + D F+ V N E ++ST E + Sbjct: 1 MGNNIMAIYGEVPELVEKKSNELTHSFLNEDKDDFNYVKYNLYET--DMSTVIEEALTMP 58 Query: 79 LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIK--SNEIKKNNTL 127 S+KK+I+++N + EK D + E + K +++I + SN++ + L Sbjct: 59 FISEKKVIVVKNSFIFTGEKVNKDITPNNEQVIEFLEKYDGENLVIFEIYSNKLDERKKL 118 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K + + + + + + I+ + K I ++A + + G + E Sbjct: 119 TKSLKKSSKLSKVDQMSEEE--IKSWIQNQIHENYKDIKQDALNLFIELTGVNFNIVSQE 176 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L K+S + + IT+ V II + + + + + AI L + K Sbjct: 177 LDKISLFLGDRTTITKNDVSLIINRSLEQNVFLLTEFIQKNQKDKAIQLVKDLIIMKEEP 236 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL ++L + I+ + S ++I + N+ P + + +R + + Sbjct: 237 IKLLALITSNYRLYYQCKILAQ-KGYSGQQIAKTI--NVHPYRVKLALNQVRHYELGQLL 293 Query: 308 ETLH 311 ++ Sbjct: 294 NIIN 297 >gi|86610126|ref|YP_478888.1| DNA polymerase III subunit delta [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558668|gb|ABD03625.1| DNA polymerase III, delta subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 330 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 125/330 (37%), Gaps = 26/330 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++++G D + + + Q + + + F+ L N+ + L S Sbjct: 2 PVYLYWGDDTYRLMQAVQQLRDQVLDPHWAAFNYDRLPPESTIAG----LNQAMTPPLGS 57 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIA- 131 +++ +E + + + + +E + + +++ + +K L+K A Sbjct: 58 TARLVWLEETTLTHHCSEDLWEEVERTLAQLPPTTHLLLTTSSKPDGRLKSTKILKKTAI 117 Query: 132 --EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 E P ++ ++ ++ ++S A Q L +G D EL+ Sbjct: 118 VREFSQLA------PWDEEGILQQVQREAEQRDLALSPAAAQKLAEAVGNDSRRLAMELE 171 Query: 190 KLSSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL+ + + I+ + V+ ++ ++ + +G + A+ + L P+ Sbjct: 172 KLALFTAGQQDPISPEQVEALVP-ASAYNSFQLAGSLRKGNLEQALRILTHLLDHNEPAL 230 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L + +F+ + ++ + + I QK E P + LQ+ + + + Sbjct: 231 KVLAVLVGQFRTWLWVRLLLDQGERDPKVIAQKAEIG-NPNRVYFLQKEVGSLKTTALLK 289 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + ++ + ++ E++ + ++ I Sbjct: 290 AMQQLLQLEYNLKQ-GQPERDAFQEALIQI 318 >gi|149280353|ref|ZP_01886474.1| hypothetical protein PBAL39_12568 [Pedobacter sp. BAL39] gi|149228902|gb|EDM34300.1| hypothetical protein PBAL39_12568 [Pedobacter sp. BAL39] Length = 341 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 113/315 (35%), Gaps = 28/315 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + I ++I+ +++I F+ VL + +++T N + S Sbjct: 17 PVYLLHGEEPYYIDQIIHYMEEHILNDMEKGFNQTVLYGKDT--DMATIMNAAKRFPMMS 74 Query: 82 KKKIILIENLSTEKKVLDC---------LEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130 ++I+++ K + + K + + I+++ K K + K Sbjct: 75 DYQLIVVKEAQDLKWAKETEGSSKEAGFVLSYFEKPLPSTILVLGYKYANFDKRKKIYKA 134 Query: 131 AEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 +K + D L I++ + I+ +A ++ LG D NEL Sbjct: 135 IDKS----GVVFQSDLVRDYKLAGWIDDLVKEKGYKIAPQASALMAEYLGTDLSKISNEL 190 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMP 246 +KL ++ +I V+ I + + E+ A + + ++F + P Sbjct: 191 EKLMLNISKETIIDTDLVQKNIGISKEYNVFELQKALASRNVLKCNQIINYFADNPKANP 250 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 ++ F + K H ++ + + E + + + R +N N Sbjct: 251 MVMVMANLNAYFTKILKYHYLQNKGDAAKELGVN----PYFVKD---YEAAARSYNLNKT 303 Query: 307 RETLHKIDHRIHLAR 321 + + + ++ Sbjct: 304 FDIISLLREYDLKSK 318 >gi|91792157|ref|YP_561808.1| DNA polymerase III, delta subunit [Shewanella denitrificans OS217] gi|91714159|gb|ABE54085.1| DNA polymerase III, delta subunit [Shewanella denitrificans OS217] Length = 343 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 98/290 (33%), Gaps = 10/290 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ +G D L+ Q K F V A E N E S SLF+ + Sbjct: 19 FLLFGDDPWLVDNAKRQILKAAKKQG---FEERVQLAQENNFNWDELQQEWQSMSLFASR 75 Query: 84 KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + N L+ ++ + ++I+ ++ T K + + + Sbjct: 76 RIIELQLPNAKPGTDGSAALQSLMQFPNPDVLLILHGPKLASEQTNNKWFKSLDAHGVYV 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++E + + + + +AK +L G+ +A+ LQ L + L Sbjct: 136 PCITPEGKQFSRWLDERINLYKLQLDHDAKAMLFNLFEGNLLAAEQALQLLQLLS-PNTL 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + D D + ++++A + A + + LL ++ Sbjct: 195 IHSDKLSDYFEDQSHFSVFQLMDALLSNHQKQAQHMLAQLASEDTALPILLWALFKELST 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + + + K I ++ + Q +L + + L Sbjct: 255 LLALK-QAQAQGEQLNALWSKHR--IWDKRKPLYQHALSHLSLAQIEHML 301 >gi|146300667|ref|YP_001195258.1| DNA polymerase III, delta subunit [Flavobacterium johnsoniae UW101] gi|146155085|gb|ABQ05939.1| DNA polymerase III, delta subunit [Flavobacterium johnsoniae UW101] Length = 334 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 125/324 (38%), Gaps = 16/324 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I +L ++N+ F+ VL ++ + + + + Sbjct: 18 PIYFLMGEEPYYIDKLSEYIEQNVLAEEEKGFNQTVLYGRDVS--VEDIVSTAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++++++ + +D +E + + + +++ K + K + K+ + + Sbjct: 76 DRQVVIVKEAQELSRTIDKIEAYVNNPMESTVLVFCYKYKTLDKRKKVTKLL--AQNGIV 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + D I+ L + +I +A +L+ LG D NEL+KL + Sbjct: 134 YESKKLYENQVGDWIKRVLAGKKYTIDPKANAMLVEFLGTDLSKINNELEKLQIILPQGT 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 +IT QH+++ I + + E+ A + A +A+ F + + P Sbjct: 194 MITPQHIEENIGFSKDYNVFELRKAIGERNQLKAYKIAENFAHNPKEYPLVMTTGLVFGF 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F L K H +K+ + + ++ + ++ +++ + V + + + Sbjct: 254 FVQLLKYHGLKDKNPKNVASVLG--VNPFFLKEYDL---AVKNYPMRKVSQIVGALRDID 308 Query: 318 HLAR---KKKYLEKNIIFQTILYI 338 ++ + +++ + + I Sbjct: 309 VKSKGVGANALPQSDLLKEMLYKI 332 >gi|308388896|gb|ADO31216.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis alpha710] gi|325129868|gb|EGC52673.1| DNA polymerase III, delta subunit [Neisseria meningitidis OX99.30304] gi|325136070|gb|EGC58680.1| DNA polymerase III, delta subunit [Neisseria meningitidis M0579] gi|325140137|gb|EGC62666.1| DNA polymerase III, delta subunit [Neisseria meningitidis CU385] Length = 332 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSN 272 + L ++ + + Sbjct: 253 RTLIRLAAVLKQGQ 266 >gi|225025260|ref|ZP_03714452.1| hypothetical protein EIKCOROL_02157 [Eikenella corrodens ATCC 23834] gi|224942018|gb|EEG23227.1| hypothetical protein EIKCOROL_02157 [Eikenella corrodens ATCC 23834] Length = 335 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 116/345 (33%), Gaps = 17/345 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I + + + + +++ +G + L E ++ + + + Sbjct: 1 MAAISTERLL---PQLKQPLQALYVLHGEEALLRIEALDAIRAAAKEQGYLNRET---HT 54 Query: 61 LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + + NS LF++ K+ I + K + LE++ + + +I Sbjct: 55 PDTAADWQDLLASANSIGLFAELKLLEIHLPGGKPGKAGGEALEQLAANLPPDTVTVILL 114 Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 ++++ T K S + + L I L SI EA + + Sbjct: 115 PKLERAQTQAKWFAALSRSGTVVEAKAVDAQALPGWIRGRLAQHHLSIGNEALALFAERV 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A++ E+ KL+ + + + D + ++ A + G+ + L Sbjct: 175 EGNLLAAKQEIDKLALLYPAGHELGIAETEAAVADVARFDVFQLAAAWMSGEPARVVRLL 234 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 + A LL + L ++ + ++ + K+ + + Sbjct: 235 EGLEADGEEPVMLLWMLADDIRTLIRLTAAL-KQGQTVAQVRNSLR--LWGSKQQLAPLA 291 Query: 298 LRIWNKNLVRETLH---KIDHRIHLARKKKYLEKNIIFQTILYIA 339 +R + L +ID I A + I Q ++ +A Sbjct: 292 VRRIATPRLIAALQECARIDRIIKGA--ETGEAWPAIRQLLVSLA 334 >gi|293569410|ref|ZP_06680707.1| DNA polymerase III, delta subunit [Enterococcus faecium E1071] gi|291587936|gb|EFF19787.1| DNA polymerase III, delta subunit [Enterococcus faecium E1071] Length = 344 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 122/301 (40%), Gaps = 18/301 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++K L ++ + K I + D + L+ ++ E + F + Sbjct: 19 YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76 Query: 84 KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132 +++ +EN L+ EK + D L + + + + +++ + ++ + + K + Sbjct: 77 RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K ++ + N+ + + +L + + A + L D ELQKL Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y IT + V++++ T I ++ ++GK A+ L + + + + Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L + +L + + + I +T K I P + + + ++ ++++L+ + + Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311 Query: 313 I 313 + Sbjct: 312 L 312 >gi|255066653|ref|ZP_05318508.1| DNA polymerase III, delta subunit [Neisseria sicca ATCC 29256] gi|255048981|gb|EET44445.1| DNA polymerase III, delta subunit [Neisseria sicca ATCC 29256] Length = 333 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 15/284 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVFTADNG---ADWDELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K D L+ + + + +I +++K T K Sbjct: 74 DLKLLEIHIPNGKPGKTGGDALQTFAERLPEDTVTLILLPKLEKAQTQAKWFTALAAKGT 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L I+ L +I +A + + G+ +A+R E+ KL+ ++ Sbjct: 134 VLEAKAISAQALPQWIKGRLNKVGLNIEPDALALFAERVEGNLLATRQEIDKLALLHPQN 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G L D LL + Sbjct: 194 HTVNIADAEAAVANVARFDVFQLSGAWMKGDALRVARLLDGLEEEGEEPVLLLWAVAEDI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE--------KNIIPMKRNIL 294 + L ++ S + + I + + Sbjct: 254 RTLIRLTAAL-KQGQSVQSVRDSLRLWGDKQTLAPIAVKRIPAV 296 >gi|170728033|ref|YP_001762059.1| DNA polymerase III subunit delta [Shewanella woodyi ATCC 51908] gi|169813380|gb|ACA87964.1| DNA polymerase III, delta subunit [Shewanella woodyi ATCC 51908] Length = 346 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 114/304 (37%), Gaps = 10/304 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G D L E + + + F + E N + ++ + SLF+ + Sbjct: 19 YLVFGDDPWL-CETSRELI--FTQAKKEGFEEKIQLTQEAGFNWNDLVDQWQAMSLFASR 75 Query: 84 KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II ++ + + ++ + ++II ++ T K + + + Sbjct: 76 RIIELILPQAKPGSEGGAIFQTLMQMPNPDVLLIISGPKLAAEQTKSKWFKTLDAKGVYV 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++E + + +++++AK++L G+ +A+ ++ +L + Sbjct: 136 PCATPEGNQFQRWLDERINHFKLTLTRDAKEMLFGLYEGNLLAA-DQSLQLLQLLSPNER 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + D + ++ +A + + A+ + A + +L G ++ Sbjct: 195 IDSNQLSAYFEDQSRFSVFQLTDAMLNNQQDKALHILSQLKAEGVAMPIILWGVFKELAT 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L ++ + +N S + + K I ++++ Q +L + + L Sbjct: 255 LLQLRTALD-NNESLQSLWGKLR--IWDKRKSLYQAALNRLSLAHIETLLAGASAIELKL 311 Query: 321 RKKK 324 +++ Sbjct: 312 KQQG 315 >gi|237730625|ref|ZP_04561106.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2] gi|226906164|gb|EEH92082.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2] Length = 343 Score = 82.7 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + ++ + SLF+ ++ ++ + + + L ++ + ++I++ N++ K Sbjct: 60 DWGEIFSLCQAMSLFANRQTLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + + +SC + L + + + A Q+L G+ + Sbjct: 120 AQENAAWYTGLANNAVQVSCQTPEQAQLPRWVAARAKLNNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++L+ D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLAL-LWPDGKLTLPRVEKAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L N Sbjct: 239 EGSEPVILLRTIQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMMGDALNRLN 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVTLLTRTEITLKQ 314 >gi|163755502|ref|ZP_02162621.1| hypothetical protein KAOT1_05057 [Kordia algicida OT-1] gi|161324415|gb|EDP95745.1| hypothetical protein KAOT1_05057 [Kordia algicida OT-1] Length = 334 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 102/263 (38%), Gaps = 8/263 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ ++ + F+ +VL ++ + + + Sbjct: 18 PIYFLMGEEAYYIDKIAEYIEEKVLAEEEKGFNQMVLYGRDVTVD--DIVANAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++++ + +D L I +++I K +I KN L K+ + + Sbjct: 76 ERQVVIVKEAQDLSRTIDKLVSYIENPQPTTVLVICYKYKKIAKNKKLYKV--TKKNGVM 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + D I L + I+ +A Q+L+ LG + NEL+KL Sbjct: 134 YESKKLYENQVADWIRRVLAGKKYKITPKAAQMLVEFLGTNLSKIDNELEKLKLILPIGS 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT + +++ I + E+ A + A + +F + P+ + Sbjct: 194 EITPEAIEENIGISKDYNNFELRKAIGDRDVKKAFRIITYFSENPKDNPTVVTVSLLFNF 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280 F L + H +++ + + +++ Sbjct: 254 FSQLLQYHGLRDQNPKNVASVLR 276 >gi|283834053|ref|ZP_06353794.1| DNA polymerase III, delta subunit [Citrobacter youngae ATCC 29220] gi|291070196|gb|EFE08305.1| DNA polymerase III, delta subunit [Citrobacter youngae ATCC 29220] Length = 343 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + ++ + SLF+ ++ ++ + + + L ++ + ++I++ N++ + Sbjct: 60 DWGEIFSLCQAMSLFASRQTLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTR 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + + +SC + L + + + A Q+L G+ + Sbjct: 120 AQENAAWYTGLAKNAVQVSCQTPEQAQLPRWVAARAKLNNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++L+ D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLAL-LWPDGKLTLPRVEKAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L Sbjct: 239 EGSEPVILLRTIQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGDALNRLT 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVTLLTRTEITLKQ 314 >gi|224582482|ref|YP_002636280.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467009|gb|ACN44839.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|321226227|gb|EFX51278.1| DNA polymerase III delta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 340 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 57 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 116 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 117 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 176 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 177 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 235 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 236 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 291 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 292 PAQLRQAVQLLTRTEITLKQ 311 >gi|161504179|ref|YP_001571291.1| DNA polymerase III subunit delta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865526|gb|ABX22149.1| hypothetical protein SARI_02286 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 343 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 95/268 (35%), Gaps = 24/268 (8%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ + + + + L +I + ++I+ + Sbjct: 60 DWGSLFSLCQAMSLFASRQTLALQLPENGPNAAMNEQLATLIGLLHDDLLLIV------R 113 Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N L K E A++ C + L + + A Q+L Sbjct: 114 GNKLTKAQENAAWYAALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQTVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-EKNIIPM-KRNIL 294 LL ++ LL + S ++ +K+ I +R ++ Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNL------KRQSAHTPLRALFDKHRIWQNRRPMI 286 Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARK 322 ++L+ + +R+ + + ++ Sbjct: 287 GDALQRLHPAQLRQAVQLLTRTEITLKQ 314 >gi|194290698|ref|YP_002006605.1| DNA polymerase III subunit delta [Cupriavidus taiwanensis LMG 19424] gi|193224533|emb|CAQ70544.1| DNA polymerase III, delta subunit [Cupriavidus taiwanensis LMG 19424] Length = 352 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 109/291 (37%), Gaps = 15/291 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E +++ + FS + E + S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDRLRATAREAG---FSEREVLVAERGFHWGRLVEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +KI+ I + K + L + + + ++++ + + + + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVMLVTLPRLDFAASKSAWFQALEGAGV 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSS 193 +I ++ L + E L + Q+ + + A Q + + G+ +A+ E+QKL Sbjct: 139 SIKVDTVDRTRLPAWVGERLALQQQRVQGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 ++ + V D + + + ++ + + G + + + + + +L Sbjct: 199 -LYPPGELSFEQVHDAVLNVARYDVFKLSESMLSGDVPRLVRMLEGLRGEGEATVLVLWA 257 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 ++ ++L K+ + ++++ + + ++ ++ + + Sbjct: 258 LTEEIRVLSKVR-QGLAAGKPAGVLMRELR--VWGPRERLVPQAAQRLAQP 305 >gi|56414219|ref|YP_151294.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363142|ref|YP_002142779.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128476|gb|AAV77982.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094619|emb|CAR60141.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 343 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVATRAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|332830307|gb|EGK02935.1| DNA polymerase III, delta subunit [Dysgonomonas gadei ATCC BAA-286] Length = 334 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 110/317 (34%), Gaps = 23/317 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 +A I++ KF V++ G + I E+ + + F+ + Sbjct: 7 IADIKARKF-----------KPVYLLMGDEPYYIDEITDMLVSTVLPEEEKDFNQTIRYG 55 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--S 118 +E ++++ S + S ++I+I+ K+ + LE + ++++ + Sbjct: 56 MET--DVASVITMARSFPMMSDYQLIVIKEAQNLSKI-EELEVYAKNPLHTTVLVLNYKN 112 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + K L AE + + + + I + +I ++ Q+L LG Sbjct: 113 GTLDKRKKL--YAEIDKNGIVFESKKIPEYKIPAFISSYMQQKGLAIDAKSAQMLSDYLG 170 Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D NE+ K L + +T +++ I + E++ A I+ + +A Sbjct: 171 NDLSKLTNEIAKLLIAMPKGQTQVTPNLIEENIGISKDFNNFELLKAVIEKNTFKVNQIA 230 Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D+F + K + L F I + ++ + Sbjct: 231 DYFEKNPKNNPLIVTLVVLFNFFSNLMICYWAKNKTEQGIAAELGFRNP--YQAKDYVA- 287 Query: 297 SLRIWNKNLVRETLHKI 313 ++R +N E L + Sbjct: 288 AIRNYNAFKCMEILSLL 304 >gi|83719754|ref|YP_441760.1| DNA polymerase III subunit delta [Burkholderia thailandensis E264] gi|167618685|ref|ZP_02387316.1| DNA polymerase III subunit delta [Burkholderia thailandensis Bt4] gi|257137926|ref|ZP_05586188.1| DNA polymerase III subunit delta [Burkholderia thailandensis E264] gi|83653579|gb|ABC37642.1| DNA polymerase III, delta subunit [Burkholderia thailandensis E264] Length = 362 Score = 82.7 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 44/349 (12%), Positives = 131/349 (37%), Gaps = 27/349 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K D L+ + + + ++++ + + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGADNPDALMLVTLPRLDSATQKSAWFTALVNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKVDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGTLTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGARERLVGPALARVSEAALEHALAFAA 311 Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351 ++D ++ AR + + + +FQ + +A+ + + +R Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARASGPAGDAPRR 360 >gi|330983121|gb|EGH81224.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 213 Score = 82.7 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 79/198 (39%), Gaps = 9/198 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQASASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++ + + K L E + + +++I ++ + K + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134 Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + +P + L I + L + +++A +++ A + G+ +A+ E++KL Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193 Query: 197 EDILITEQHVKDIICDTH 214 E+ IT + V+ + D+ Sbjct: 194 EEGQITVETVQAAVADSA 211 >gi|258592112|emb|CBE68417.1| putative DNA polymerase III, delta subunit [NC10 bacterium 'Dutch sediment'] Length = 335 Score = 82.7 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 90/251 (35%), Gaps = 5/251 (1%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ YG ++ + +NQ + +L + E S + + + Sbjct: 22 PVYCLYGEEEYRREQTLNQLLDALLTKDARDLNLDQIRPGETGA-PSIL-GSVRTLPFLA 79 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++++LI + ++ + L + +++ + + L + + Sbjct: 80 LRRVVLIRGVEELSREQQEELLAYLNDPCPTSCLVLTARRLDLRTRLAAAL--QKKGVLL 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 L D + + + +A +LLA +G D ++K++ + E Sbjct: 138 RFDRLEADSLKDSLLAAADDRGVRLHPDAIGLLLALVGDDFRQLIYNIEKVALFVGEREE 197 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I ++ ++ +T V I ++ +A + A+ L S A++ ++ +L Sbjct: 198 IRANDIEAMVGETRVRSIFQLTDAVSSRNLDMALRCLTGLLESGEEPLAIIGMLARQIRL 257 Query: 261 LEKIHIIKECS 271 L + ++E Sbjct: 258 LVRAKALQEQK 268 >gi|83648019|ref|YP_436454.1| DNA polymerase III subunit delta [Hahella chejuensis KCTC 2396] gi|83636062|gb|ABC32029.1| DNA polymerase III, delta subunit [Hahella chejuensis KCTC 2396] Length = 338 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 114/299 (38%), Gaps = 15/299 (5%) Query: 23 VFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 VF+ G + L E I F + + F + S S SL Sbjct: 19 VFVVSGDEPLLRQEACDEIRAFSRKQGFSERIVFHAPK------NFDWSALDEHTQSFSL 72 Query: 80 FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 F +KK++ + + L + +++I S+ I+ + K + T Sbjct: 73 FGEKKLLEVHLDSLPNDGGKKRLAAFSENPPEDCLMLIISDRIESSTLNTKWFKSIETHS 132 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 L + +P + L + I + L + + A + L ++ G+ +A+R E++KL + Sbjct: 133 LHVQVWPVSHDQLPNWINQRLHKLGFTPTSGAVKALCDHVEGNLLAARQEMEKLRLLS-D 191 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D + E+ V I +++ + +++A ++ A+ + A +L ++ Sbjct: 192 DANLDEEQVLRGISNSNKFTVFNLVDACLERNPKQALKVLQTLQAESFEPSIVLWSLARE 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 +LL K++ + S E+ +QK + + + + + +N +R Sbjct: 252 VRLLAKLYKHSQTS-QGLEQALQKER--VFKNRWTLYKRFIPRFNAARLRNIHQACQAA 307 >gi|15606373|ref|NP_213752.1| hypothetical protein aq_1104 [Aquifex aeolicus VF5] gi|7388450|sp|O67189|Y1104_AQUAE RecName: Full=Uncharacterized protein aq_1104 gi|2983581|gb|AAC07153.1| putative protein [Aquifex aeolicus VF5] Length = 350 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 124/330 (37%), Gaps = 36/330 (10%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68 F K K VF+ +G ++ LI +++ K+ Y VL EI + Sbjct: 12 FFTKPPKE-----RVFVLHGEEQYLIRTFLSKLKEKYGENY------TVLWGDEISE--E 58 Query: 69 TFWNEINSTSLFSK--KKIILIENLSTEKKVLDCLEEI------IIKNICNHIIIIKSNE 120 F+ ++ TS+F +K ++I N K L ++ +++N+ ++ + I Sbjct: 59 EFYTALSETSIFGGSKEKAVVIYNFGDFLKKLGRKKKEKERLIKVLRNVKSNYVFIV--- 115 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQIL 173 + L+K + +++ + +K + L+ + ++ +A + L Sbjct: 116 --YDAKLQKQELSSEPLKSVASFGGIVVANRLSKERIKQLVLKKFKEKGINVENDALEYL 173 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV-LYIEEIINATIQGKIYN 232 L G + + + E++KL Y E ++T VK + + + E ++ + Sbjct: 174 LQLTGYNLMELKLEVEKLIDYASEKKILTLDEVKRVAFSVSENVNVFEFVDLLLLKDYEK 233 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ + D ++ + ++ L + + E K ++ + + Sbjct: 234 ALKVLDSLISFGIHPLQIMKILSSYALKLYTLKRL-EEKGEDLNKAMESVGIKNNFL-KM 291 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + L+ +K ++ + + ++ Sbjct: 292 KFKSYLKANSKEDLKNLILSLQRIDAFSKL 321 >gi|28199119|ref|NP_779433.1| DNA polymerase III subunit delta [Xylella fastidiosa Temecula1] gi|182681846|ref|YP_001830006.1| DNA polymerase III subunit delta [Xylella fastidiosa M23] gi|28057217|gb|AAO29082.1| DNA polymerase III delta subunit [Xylella fastidiosa Temecula1] gi|182631956|gb|ACB92732.1| DNA polymerase III, delta subunit [Xylella fastidiosa M23] gi|307578095|gb|ADN62064.1| DNA polymerase III subunit delta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 343 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + ++ G + + E + + + + + + Sbjct: 2 ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + N+ SLFS +++I I K+ + + + I++I NE Sbjct: 60 F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117 Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + K + + I+ + L D I L + + L L G Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHRLSTRLEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E+ KL+ + L+ + ++ + DT + + A + G+ I + Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A ALL +++ + +K + ++ + I ++ + +L+ Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292 Query: 300 IWNKN 304 Sbjct: 293 RHTSP 297 >gi|167550816|ref|ZP_02344572.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324119|gb|EDZ11958.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 343 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQEQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|218708737|ref|YP_002416358.1| DNA polymerase III subunit delta [Vibrio splendidus LGP32] gi|218321756|emb|CAV17711.1| DNA polymerase III, delta subunit [Vibrio splendidus LGP32] Length = 341 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ L+ E +K F A++ + + ++ + SLFS Sbjct: 18 NVYLIFGNEPLLLQESREAIQKTAKEQG---FEERHRFAIDSSLDWNQVYDCTQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138 +++I +E + L I + ++I+ ++ K K + ++ Sbjct: 75 SRQLIELELPESGVNAAIAKELLAISEHIHSDILLILVGTKLTKAQESAKWFKALSNQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC + L ++ S EA Q+L G+ A L+KL+ D Sbjct: 135 WISCLTPDVSRLPQFVQTRCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + +A + GK A + A + LL ++ Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 LL + + ++ + ++ +K I K+ + +L + + + + Sbjct: 254 ALLLQ--MQQQMKQMPIAQVFEKHR--IWQSKKPLYNSALTRVSISQLHSLFALLTQVEL 309 Query: 319 LAR 321 + + Sbjct: 310 MIK 312 >gi|16331691|ref|NP_442419.1| DNA polymerase III subunit delta [Synechocystis sp. PCC 6803] gi|1001248|dbj|BAA10489.1| sll0544 [Synechocystis sp. PCC 6803] Length = 333 Score = 82.3 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 110/286 (38%), Gaps = 11/286 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ ++G D+ + + + Q +K + F+ + E + + S Sbjct: 2 PVYFYWGEDQFTLHQAVKQLQKRCLDPQWEAFNFEKI-PGEQADATQRGLEQALTPPFGS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTS 136 +++ + + S + +L L++ + + ++ S++ + + K E + Sbjct: 61 GDRLVWVVDSTLGQSCDDGLLARLQKSLPAIPTDCHLLFTSSKKLDRRLKSTKYLEGNAT 120 Query: 137 VLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + P N L+ I+ Q ++ E + L LG D NEL KL Y Sbjct: 121 IREFALISPWNVDALIHQIQAIAQDLQLPLATETEGFLAEALGNDTRLIWNELGKLKLYS 180 Query: 196 -LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML-ADFFLASKMPSHALLHG 253 + +T V+ ++ + ++ + A G+ A+ L AD L P+ +L Sbjct: 181 ESQTGPLTVAQVEQLVNTSTQNSLQ-LAQAIRDGETPQALQLVADLLLTHNEPALKILAT 239 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 +F+ I + E + I + + + P + L++ LR Sbjct: 240 LTGQFRTWTLIKLALEAGEKDDKAIAAQADLS-NPKRLYFLKKELR 284 >gi|217420530|ref|ZP_03452035.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 576] gi|217395942|gb|EEC35959.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 576] Length = 362 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 45/349 (12%), Positives = 129/349 (36%), Gaps = 27/349 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSCVSEAALEHALAFAA 311 Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351 ++D ++ AR + + + +FQ + +A+ A + +R Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARAAGPGGDAPRR 360 >gi|167769103|ref|ZP_02441156.1| hypothetical protein ANACOL_00426 [Anaerotruncus colihominis DSM 17241] gi|167668743|gb|EDS12873.1| hypothetical protein ANACOL_00426 [Anaerotruncus colihominis DSM 17241] Length = 342 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 17/334 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V++ YG LI K + F+L + + ++ TF++ + S L Sbjct: 15 HNVYLLYGGQAYLIALYEKMIVKKALGGADEAFNLRRFDGDTL--DLQTFYDAVESVPLM 72 Query: 81 SKKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIIIKSNEIKKN----NTLRKIAEK 133 + + + +L EK + L +I +I++ E N L K +K Sbjct: 73 AAGCCVTL-SLDPEKLDMSRMKELCAVIGDPPQTTVIVVTVKEPPARREKMNLLIKACDK 131 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V+ + + + + ++ ++ D EL KL + Sbjct: 132 AGCVVELGS--RRGADTLRFLRDRAQKNGCTLESGEASYMVERCTDDLQLLATELDKLCA 189 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y IT + ++ I ++ A ++G A+ L + P+ L Sbjct: 190 YASGRK-ITRADIDAVVTVVLQARIFDLSKAILRGNFPKAMELISQLDDLREPAARTLSI 248 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTE--KNIIPMKRNILQESLRIWNKNLVRETLH 311 F L + ++ N+ + + KN +N + +S + + L Sbjct: 249 LSGAFVDLYRGFAARQA-NVPAGRAAPELGYAKNREFAIKNGMSDS-GAYTAGQLGAMLE 306 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + ++ ++ +T+ + + Sbjct: 307 ALAEADLRVKSSGGDDRVVLEETVAKLFLIGGRQ 340 >gi|168264421|ref|ZP_02686394.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347132|gb|EDZ33763.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 343 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|303257885|ref|ZP_07343894.1| DNA polymerase III, delta subunit [Burkholderiales bacterium 1_1_47] gi|331000455|ref|ZP_08324130.1| DNA polymerase III, delta subunit [Parasutterella excrementihominis YIT 11859] gi|302859228|gb|EFL82310.1| DNA polymerase III, delta subunit [Burkholderiales bacterium 1_1_47] gi|329571787|gb|EGG53467.1| DNA polymerase III, delta subunit [Parasutterella excrementihominis YIT 11859] Length = 336 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 110/322 (34%), Gaps = 36/322 (11%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFE-----LINQFKKNISITYHDPFSLVVLNALEIQKN 66 + +N L F+ GS+ L E FK S F E + Sbjct: 12 RPDENGNLPRLWFLL-GSEPLLAIEAQDAIRAAAFKAGYSERKSFVF--------EGNAD 62 Query: 67 ISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 S + + SLF +K +I + + K +E +I + ++++ + Sbjct: 63 YSPLYEALGDQSLFGEKNLIEVVFPRATIGKNGPAAVEAVIEHADEDKMVVVSLFDYDWT 122 Query: 125 NTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLI-GQKSISKEAKQILLANLGGDRI 182 T + S + I P ++ + I E ++++ EA ++ G+ + Sbjct: 123 ATKKDWFNHLMKSSVCIRTDPIDRNAVPRWITERAKEKNGQTLTPEAANLIAERTEGNLL 182 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A+ E+QKL+ + I V D + D E + A ++G + D Sbjct: 183 ATSQEIQKLAL-LVNKPEIDVSDVLDAVSDVSRFDQESLFLAMLEGDARQVSKIIDSLQG 241 Query: 243 SKMPSHA---LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + + +L ++ LL + ++ R+ L + R Sbjct: 242 ENVQIPSFLWMLTDVVRNLLLLNRGFAVRTFGLSEA--------------HRSALNRASR 287 Query: 300 IWNKNLVRETLHKIDHRIHLAR 321 N L+ LH++ +++ Sbjct: 288 RANPKLLELMLHRLSDVDRMSK 309 >gi|16759605|ref|NP_455222.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764023|ref|NP_459638.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142622|ref|NP_805964.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161615136|ref|YP_001589101.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167990655|ref|ZP_02571755.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231661|ref|ZP_02656719.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240495|ref|ZP_02665427.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465823|ref|ZP_02699705.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820231|ref|ZP_02832231.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445031|ref|YP_002039889.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450654|ref|YP_002044680.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472100|ref|ZP_03078084.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249169|ref|YP_002145622.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262448|ref|ZP_03162522.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244429|ref|YP_002214635.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390932|ref|ZP_03217543.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213161485|ref|ZP_03347195.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425090|ref|ZP_03357840.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612902|ref|ZP_03370728.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646899|ref|ZP_03376952.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851857|ref|ZP_03381389.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911597|ref|ZP_04655434.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289823655|ref|ZP_06543267.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25366826|pir||AI0581 DNA polymerase III, delta chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419158|gb|AAL19597.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501897|emb|CAD05123.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138253|gb|AAO69824.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161364500|gb|ABX68268.1| hypothetical protein SPAB_02904 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403694|gb|ACF63916.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408958|gb|ACF69177.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458464|gb|EDX47303.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631973|gb|EDX50493.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212872|gb|ACH50269.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240703|gb|EDY23323.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938945|gb|ACH76278.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603377|gb|EDZ01923.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205330935|gb|EDZ17699.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334137|gb|EDZ20901.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340009|gb|EDZ26773.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343203|gb|EDZ29967.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245919|emb|CBG23720.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992381|gb|ACY87266.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157247|emb|CBW16734.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911678|dbj|BAJ35652.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323128963|gb|ADX16393.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326622390|gb|EGE28735.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987591|gb|AEF06574.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 343 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|167580575|ref|ZP_02373449.1| DNA polymerase III subunit delta [Burkholderia thailandensis TXDOH] Length = 362 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/349 (12%), Positives = 131/349 (37%), Gaps = 27/349 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K D L+ + + + ++++ + + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGADNPDALMLVTLPRLDSATQKSAWFTALVNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGTLTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGARERLVGPALARVSEAALEHALAFAA 311 Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351 ++D ++ AR + + + +FQ + +A+ + + +R Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARASGPAGDAPRR 360 >gi|150025132|ref|YP_001295958.1| DNA polymerase III, delta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771673|emb|CAL43147.1| Probable DNA polymerase III, delta subunit [Flavobacterium psychrophilum JIP02/86] Length = 334 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 119/324 (36%), Gaps = 16/324 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I +L +KNI + F+ VL ++ I + + + Sbjct: 18 PIYFLMGEEPYYIDKLSEYIEKNILQEHERDFNQTVLYGRDVT--IEDVVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++++++ + +D LE +++I K + K + KI + Sbjct: 76 DRQVVIVKEAQDLIRTIDKLESYAENPQPTTVLVICYKYKTLDKRKKITKIL--AQKGVV 133 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + ++ L + +I +A +L+ LG D NEL KL+ + Sbjct: 134 YESKKLYENQVGEWLKRVLSGKKLNIEPKASAMLVDFLGTDLSKIANELDKLAIILPQGS 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT +++ I + I E A + + +AD F + P Sbjct: 194 TITPAIIEENIGFSKDFNIFEFRKAIGERNQLKSYKIADHFAQNPKDNPMVVTTSLVFSF 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F L K H +K+ + + I+ + +I +LR + V + + + Sbjct: 254 FIQLLKYHGLKDKNPKTVAPILGVS--PFFLKDYDI---ALRNYPMKKVSQIVASLRDID 308 Query: 318 HLAR---KKKYLEKNIIFQTILYI 338 ++ + +++ + ++ I Sbjct: 309 VKSKGVGANALPQSDLLKEMLVKI 332 >gi|62179246|ref|YP_215663.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126879|gb|AAX64582.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713711|gb|EFZ05282.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 343 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQSLERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L+ + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|281420769|ref|ZP_06251768.1| DNA polymerase III, delta subunit [Prevotella copri DSM 18205] gi|281405061|gb|EFB35741.1| DNA polymerase III, delta subunit [Prevotella copri DSM 18205] Length = 342 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 108/281 (38%), Gaps = 12/281 (4%) Query: 1 MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 M +S + K+L V++ G + I ++ + +N+ F+ V+ Sbjct: 1 MVEKKSAISYESIMKDLKARKYSPVYVLMGEEPFYIDKICDYISENVLQPEERDFNQTVV 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116 ++ + + + ++ ++++++ + + + LE+ + + I++ Sbjct: 61 FGADVTG--AQVADLCKGYPMMAEYRVVVVKEAQNLRNL-EALEKYLENPVKTTILVFCH 117 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 K+ ++ +A + + +L IE L + +I +A Q++ + Sbjct: 118 KNGKLDSRKKFSALA--AKAGVVFESKKLYDRNLPGFIETYLKTRKATIEPKATQMVADH 175 Query: 177 LGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 +G D +EL K L S D +T + V+ I + E+ +A I ++ A Sbjct: 176 VGADLHRLTSELDKLLISLPENDRRVTPEIVEREIGVSKDFNAFELRSAIISRDVFKANQ 235 Query: 236 LADFFLASKMPS--HALLHGFLQKFQLLEKIHIIKECSNIS 274 + ++F ++ LL FQ L + N + Sbjct: 236 IINYFDSNPKSGSLFTLLPMLFTYFQNLMIAYYAPNRQNEN 276 >gi|309781283|ref|ZP_07676019.1| DNA polymerase III, delta subunit [Ralstonia sp. 5_7_47FAA] gi|308919696|gb|EFP65357.1| DNA polymerase III, delta subunit [Ralstonia sp. 5_7_47FAA] Length = 358 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 43/341 (12%), Positives = 118/341 (34%), Gaps = 24/341 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E ++ ++ ++ + S S SLF Sbjct: 22 PLYVVHGDEHLLALEAVDALRQAARAQGFTEREVMSVERGFSW---SRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL ++T V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++ + ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L K+D ++ R+ + + +L +A + + Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353 >gi|83815422|ref|YP_444643.1| DNA polymerase III, delta subunit [Salinibacter ruber DSM 13855] gi|83756816|gb|ABC44929.1| DNA polymerase III, delta subunit [Salinibacter ruber DSM 13855] Length = 347 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 98/260 (37%), Gaps = 17/260 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F+G + LI EL F+L V+ E + S + Sbjct: 23 PLYFFFGEETFLIDELQELLIDEALDPSQHDFNLDVVYGSETEA--SEVIGLCQGFPAGA 80 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138 K+++++ + ++ + I+++ + + R + E T Sbjct: 81 PKRVVVVREFEKLEN-NRQFKDYAAQPNPQAIVLLACTSKPNLSA-HPYRALKEHATWSE 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 S Y DN+ + I++ + I +A Q+L +G D + +E++KL ++ + Sbjct: 139 FESPY-DNE--MPGWIQDYVQGQGYEIKPKAVQMLADYVGTDLQRAASEIEKLITFAGDA 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-------HALL 251 +T V T + E+ +A +G+ +A + D L A+L Sbjct: 196 TRLTADDVLAASGQTREFNVFELQSALGEGRPADAQRIVDRILQQASNPRSEAIMMVAVL 255 Query: 252 HGFLQKFQLLEKIHIIKECS 271 +G+ K L+K ++E Sbjct: 256 NGYFDKLWKLQKPGALRENK 275 >gi|260893425|ref|YP_003239522.1| DNA polymerase III, delta subunit [Ammonifex degensii KC4] gi|260865566|gb|ACX52672.1| DNA polymerase III, delta subunit [Ammonifex degensii KC4] Length = 336 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 97/236 (41%), Gaps = 14/236 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++F+G ++ L E + F + + + +PF L+ E +++ + Sbjct: 17 RPLYLFWGPERYLQKEAVRWF-RTLLVGEDNPFDFARLDGEETSG--EQVAAAASTSPVL 73 Query: 81 SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKF 134 ++ ++++++N + +K+ L + + +I + ++ R +AEK Sbjct: 74 AQWRLVVVDNAPYFAAGKKQADRALLDYLRHPSPTTCLIFCTTAPIDRQKPACRLLAEKG 133 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 V Y L+ +++ K I+ EA ++LL+ G D R E +K+ +Y Sbjct: 134 KIVEFT--YLSPS-DLLRWLQKRAREAGKQITPEAARLLLSV-GQDLSLLRQEWEKVLNY 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 E IT V++++ + + + Q + A+ LA K P + Sbjct: 190 AGEQKEITPSSVEEVVTPPPEELLFRVTDDLSQRQYLRALGRL-RMLAEKEPPGVV 244 >gi|218442578|ref|YP_002380899.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424] gi|218175349|gb|ACK74080.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424] Length = 318 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/315 (13%), Positives = 116/315 (36%), Gaps = 23/315 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++IF+G+D LI I + K + F+ +I N++ + Sbjct: 2 KIYIFHGNDDYLISLQIEEIKSKVLSPAWVNFNFTTYPPG--VNSIEQGCNDLTTQPWGE 59 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++IL+++ + + +L+ ++ I + +I+ + ++ K L+ + + Sbjct: 60 GDRLILLKDSSWLGAMDNALLNTIKSAISTAPFSSHLILTTPKLDKR--LKSV----KYL 113 Query: 138 LAISC--------YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 ++I+ P + + + I ++ +++ A L ++G + EL+ Sbjct: 114 ISIATVIKEFALMMPWDDKGIANQIRQAAASLDITLTPTALNTLAESIGNNTRLLYQELE 173 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL YC I +K+++ + + + +Q I N + + S Sbjct: 174 KLKIYC-PVSPIQATDIKNLVEYSTSNSLS-LAKFLLQKDIVNVHQTLNELIHSGENYLK 231 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L F+ + + + ++ ++I P + L++ + + E Sbjct: 232 ILSTLTTCFRQWLTVKALID-EGVNDNQLIASAANIGNPARIYYLRKEVANISLPKFIEI 290 Query: 310 LHKIDHRIHLARKKK 324 + + ++ Sbjct: 291 MGILLETEIHLKQSN 305 >gi|209526834|ref|ZP_03275354.1| DNA polymerase III, delta subunit [Arthrospira maxima CS-328] gi|209492705|gb|EDZ93040.1| DNA polymerase III, delta subunit [Arthrospira maxima CS-328] Length = 327 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 106/284 (37%), Gaps = 19/284 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D + + ++ ++++ F+ + IS N+ + Sbjct: 2 PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60 Query: 82 KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 +++ + N + ++L LE + ++ S +K L+K A Sbjct: 61 GHRLVWLVNTPLTQHCSPEILQELERTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYA- 119 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K AI + ++ L + E + E+ + +G D E++KL Sbjct: 120 KVQEFSAIPPWKTDQ--LEQRVREVAQQLGVKLKAESVAFVAEAVGNDTRQLYGEMEKLK 177 Query: 193 SYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y D + + + +I + ++ A +GK A+ L +A P+ +L Sbjct: 178 LYAETTDGSLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLVADLIAHNEPALKIL 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291 + +F+ + ++ E ++I + E K I +K+ Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280 >gi|227114421|ref|ZP_03828077.1| DNA polymerase III subunit delta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 341 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 97/252 (38%), Gaps = 9/252 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ +GSD L+ E ++ K+ + + FS + L++ + ++ + SL Sbjct: 18 RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTDWDAIFSTCQALSL 73 Query: 80 FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 F+ ++ ++++ + + L ++ + ++I++ +++ K + Sbjct: 74 FASRQSLLLVLPENGPNAAMGENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQD 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C + L + + + ++ +A Q++ G+ +A L++L+ Sbjct: 134 SVYINCLTPEQAQLPRWVAQRAKSMKLTLDDQATQLICYCYEGNLLALSQALERLAL-LY 192 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T V+ + D ++A + GK A + LL + Sbjct: 193 PDGKLTLPRVESAVNDAAHFTPFHWLDALLAGKGKRAWHILQQLKQEDCEPVILLRTLQR 252 Query: 257 KFQLLEKIHIIK 268 + L + Sbjct: 253 ELLQLLALKRRM 264 >gi|194366682|ref|YP_002029292.1| DNA polymerase III subunit delta [Stenotrophomonas maltophilia R551-3] gi|194349486|gb|ACF52609.1| DNA polymerase III, delta subunit [Stenotrophomonas maltophilia R551-3] Length = 345 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 12/283 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 19 PVYLIAGPETLRVLEAADAVRARARAAGIGEREVFDADGRDF--DWNQLDATFNAPSLFS 76 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + + +++I +NE K + K AE + Sbjct: 77 ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITANEWSKAHQ-GKWAEAVNRIGV 135 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +S + L D IE L A Q L + G+ +A+ E+ KL+ Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + ++ AT G+ + + AL+ +++ Sbjct: 196 P-LDVERMESLVADAARYDVFRLVEATFSGQAPAVLRMLAGLRGEGEAVAALMPIVIREL 254 Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + N++ E + I ++ + +L+ Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293 >gi|296314693|ref|ZP_06864634.1| DNA polymerase III, delta subunit [Neisseria polysaccharea ATCC 43768] gi|296838526|gb|EFH22464.1| DNA polymerase III, delta subunit [Neisseria polysaccharea ATCC 43768] Length = 332 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 84/265 (31%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + +A + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAAHLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T + + + ++ A ++G + L D LL + Sbjct: 193 HTLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|71898468|ref|ZP_00680640.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1] gi|71731781|gb|EAO33840.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1] Length = 343 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + ++ G + + E + + + + + + Sbjct: 2 ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + N+ SLFS +++I I K+ + + + I++I NE Sbjct: 60 F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117 Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + K + + I+ + L D I L + + L L G Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E+ KL+ + L+ + ++ + DT + + A + G+ I + Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A ALL +++ + +K + ++ + I ++ + +L+ Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292 Query: 300 IWNKN 304 Sbjct: 293 RHTSP 297 >gi|325141973|gb|EGC64411.1| DNA polymerase III, delta subunit [Neisseria meningitidis 961-5945] gi|325197927|gb|ADY93383.1| DNA polymerase III, delta subunit [Neisseria meningitidis G2136] gi|325206449|gb|ADZ01902.1| DNA polymerase III, delta subunit [Neisseria meningitidis M04-240196] Length = 332 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVRLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSN 272 + L ++ + + Sbjct: 253 RTLIRLAAVLKQGQ 266 >gi|301025228|ref|ZP_07188795.1| DNA polymerase III, delta subunit [Escherichia coli MS 69-1] gi|300396131|gb|EFJ79669.1| DNA polymerase III, delta subunit [Escherichia coli MS 69-1] Length = 327 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 38 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLSENGPNAAINEQLLTLTGLLHDDLLLIVR 97 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 98 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 272 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 273 ALNRLSQPQLRQAVQLLTRTELTLKQ 298 >gi|241664154|ref|YP_002982514.1| DNA polymerase III subunit delta [Ralstonia pickettii 12D] gi|240866181|gb|ACS63842.1| DNA polymerase III, delta subunit [Ralstonia pickettii 12D] Length = 358 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 43/341 (12%), Positives = 118/341 (34%), Gaps = 24/341 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E ++ ++ ++ + S S SLF Sbjct: 22 PLYVVHGDEHLLALEAVDALRQAARAQGFTEREVMSVERGFSW---SRVTEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135 +KI+ I + K + L + + + +I + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTVTLITLPRLDFATAKSAWFAALE 138 Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189 ++I ++ L I E L Q+ + A Q + + G+ +A+ E+Q Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL ++T V D + + + ++ A + G + + + + + Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++ ++L KI ++++ + + ++ ++ + ++ + Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314 Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L K+D ++ R+ + + +L +A + + Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353 >gi|114331416|ref|YP_747638.1| DNA polymerase III, delta subunit [Nitrosomonas eutropha C91] gi|114308430|gb|ABI59673.1| DNA polymerase III, delta subunit [Nitrosomonas eutropha C91] Length = 357 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 114/279 (40%), Gaps = 14/279 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G + L+ E ++ + + + + ++ N ++ +SLFS+ Sbjct: 19 LYVVLGDELLLVTEATDRIRAHAKDQGYIAREIFTIDQRFEWIN---LFHWGRQSSLFSE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSV 137 ++I+ I + ++ +E+ + + I+ EI K + K E+ + Sbjct: 76 RRILDLRIPSGKPGREGSMIIEKFCQHLPRDTVTIVTLPEIDKQGRASKWFKAFERTGRI 135 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I P + L I++ L +++ ++ Q + G+ +A+ E++KL Sbjct: 136 TEIK--PVRRDQLPHWIKQRLGQQKQTTDRDTLQFFADKVEGNLLAAHQEIKKLGL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +T + +++ I D + ++ A + + + + + +L ++ Sbjct: 193 VGKLTFEQIRNAILDVTRFDVLQLPEAMLTADMVRYNRILEGLQGEGVAPPLILAILSEQ 252 Query: 258 FQLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQ 295 +LL KIH+ K S ++ E+ + + P ++ ++ Sbjct: 253 IRLLIKIHLTKNSSRGMTLEQAMAALR--VWPSRQKLIA 289 >gi|121534791|ref|ZP_01666611.1| DNA polymerase III, delta subunit [Thermosinus carboxydivorans Nor1] gi|121306586|gb|EAX47508.1| DNA polymerase III, delta subunit [Thermosinus carboxydivorans Nor1] Length = 344 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/319 (12%), Positives = 113/319 (35%), Gaps = 26/319 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + L E + +L++ + + + + + Sbjct: 17 PVYLLHGEEVYLAREFEAAIINAVLSPEERDTNLIIFDGDPA---PAELTSVVETAPFLG 73 Query: 82 KKKIILIENLSTEKKV-------------LDCLEEIIIKNICNHIIIIK-SNEIKKNNTL 127 K ++++ + + + + +++ ++I + + K L Sbjct: 74 DKNVVVVRETALFRASRKNTDESDAGDRDAERILKLVRNLPEYTLLIFQTAEAADKRRKL 133 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN- 186 K E+ + + ++ L + + L K I+ +A + LLA + S Sbjct: 134 FKTVEERGAAVELAPLK--IKELRGWVVDKLAAAGKKIAPDALEHLLAVVSMMPQVSLGF 191 Query: 187 ---ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 EL KL+ Y +IT + + +++ + + +++A Q ++ A+ L LA Sbjct: 192 LAGELAKLALYTENRAIITRRDLAEVLSAVPEVSVFALVDAITQKQVGKALSLLSDQLAI 251 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 L+ ++ ++L + + E + +I +K + ++ L + Sbjct: 252 GEHPVRLVALLARQVRMLWQAKELAE-KGLGAREIAEKLGVHPFVGEK--LARQCLQFTA 308 Query: 304 NLVRETLHKIDHRIHLARK 322 ++E + + + Sbjct: 309 GRLKEAVLALAAADRDFKS 327 >gi|304387993|ref|ZP_07370165.1| DNA-directed DNA polymerase III delta subunit [Neisseria meningitidis ATCC 13091] gi|304337992|gb|EFM04130.1| DNA-directed DNA polymerase III delta subunit [Neisseria meningitidis ATCC 13091] Length = 332 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVRLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSN 272 + L ++ + + Sbjct: 253 RTLIRLAAVLKQGQ 266 >gi|300309928|ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gi|300072713|gb|ADJ62112.1| DNA polymerase III (delta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 102/306 (33%), Gaps = 19/306 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ + L E ++ +++ + ++V+ S SLF Sbjct: 18 PLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSF---KWGELLAANQSQSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 KK+I I K L++ +++ II ++ Sbjct: 75 DKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWATQKAAWVGALQQAAV 134 Query: 140 ISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 Y D + L I L Q+S + + + G+ +A+ E+QKL+ Sbjct: 135 ---YIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAAHQEIQKLAL-L 190 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++ + V+D + + + ++ A + G I + + +L Sbjct: 191 YPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGEALPLVLWAVT 250 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++ + L K+ ++++ I + +++ +LR + + + + Sbjct: 251 EEIRTLLKLKSGM-AQGKPVGALLKEYR--IWGPRERLMEPALRRISLAALEQA---LQE 304 Query: 316 RIHLAR 321 + R Sbjct: 305 AALVDR 310 >gi|325287675|ref|YP_004263465.1| DNA polymerase III subunit delta [Cellulophaga lytica DSM 7489] gi|324323129|gb|ADY30594.1| DNA polymerase III, delta subunit [Cellulophaga lytica DSM 7489] Length = 333 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 103/263 (39%), Gaps = 8/263 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ +K + F+ +VL ++ I + + + Sbjct: 18 PIYFLMGEESYYIDKISEYIEKTVLTEEERGFNQMVLYGKDVT--IDDIVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K++++++ + +D L +++I K ++ K L K +K + Sbjct: 76 EKQVVVVKEAQHLSRTIDNLTSYANNPQLTTVLVICYKYGKLDKRKKLYKAVQKTGVLFE 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 +N + D I + L +I+ A Q+L+ LG NEL+KL +D Sbjct: 136 SKSLYEN--KVADWIMKVLKGSGYTITPVAAQLLVEYLGTSLSKINNELEKLKIVITKDT 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ-K 257 IT +++ I + E+ A + A + ++F + K + L Sbjct: 194 QITPATIEEHIGISKDFNNFELKKAIGERNTLKAARIINYFAQNPKDNPFVVTVTVLHTY 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280 F + + H +K+ S + K++ Sbjct: 254 FTQILQYHGLKDHSKSNVAKVLG 276 >gi|289675757|ref|ZP_06496647.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae FF5] Length = 185 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 72/159 (45%), Gaps = 5/159 (3%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + +++A +++ A + G+ +A+ E++KL E+ IT + V+ + D+ + + Sbjct: 1 MAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVADSARFDVFGLT 59 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 +A + G+ +A+ + + + + +L ++ + L + + +K+ Sbjct: 60 DAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQGVPLDKVFSSA 118 Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318 I ++ ++ ++L+ + + L +ID +I Sbjct: 119 RPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 157 >gi|60117405|gb|AAX14459.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila mojavensis] Length = 177 Score = 81.9 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 + +F+++ + +GSD + + + N+ +S+ V++ + Sbjct: 7 KVKRFLEQPDALSG-----VLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124 K S ++E+ + S+F+ KK+I + N+S + L+ ++ N+ H +++ ++++ N Sbjct: 57 KLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGHYVMMVASDLPYN 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + + E I+CY D+ +L D+I L + E L + Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQS 165 >gi|15838769|ref|NP_299457.1| DNA polymerase III subunit delta [Xylella fastidiosa 9a5c] gi|9107318|gb|AAF84977.1|AE004031_9 DNA polymerase III, delta subunit [Xylella fastidiosa 9a5c] Length = 343 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + ++ G + + E + + + + + + + Sbjct: 2 ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTHARADGITEREIFDVESRD 59 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + N+ SLFS +++I I K+ + + + I++I NE Sbjct: 60 F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117 Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + K + + I+ + L D I L + + L L G Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWTIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E+ KL+ + L+ + ++ + DT + + A + G+ I + Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A ALL ++ + +K + ++ + I ++ + +L+ Sbjct: 236 LRAEGEAVAALLPILTKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292 Query: 300 IWNKN 304 Sbjct: 293 RHTSP 297 >gi|107021733|ref|YP_620060.1| DNA polymerase III subunit delta [Burkholderia cenocepacia AU 1054] gi|116688679|ref|YP_834302.1| DNA polymerase III subunit delta [Burkholderia cenocepacia HI2424] gi|105891922|gb|ABF75087.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia AU 1054] gi|116646768|gb|ABK07409.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia HI2424] Length = 364 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307 >gi|238026217|ref|YP_002910448.1| DNA polymerase III subunit delta [Burkholderia glumae BGR1] gi|237875411|gb|ACR27744.1| DNA polymerase III [Burkholderia glumae BGR1] Length = 379 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 104/286 (36%), Gaps = 15/286 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L+ E ++ + S+ + + S+ + SLF + Sbjct: 19 LYTVYGDEPLLVQEACDRIRAAARAGGFTERSVFTVERSF---DWSSLLGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAGAGNPDVLMLVTLPRLDAATQKSAWFTALGNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAAQGQRVAAGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + V+D + + + ++ A + G + D +L Sbjct: 195 LYPSGTLALDQVQDAVLNVARYDVFKLNEAMLAGDAGRLARMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +++ + L +I + ++++ + + ++ +L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLIGPALSR 297 >gi|170701655|ref|ZP_02892598.1| DNA polymerase III, delta subunit [Burkholderia ambifaria IOP40-10] gi|170133444|gb|EDT01829.1| DNA polymerase III, delta subunit [Burkholderia ambifaria IOP40-10] Length = 364 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307 >gi|300931574|ref|ZP_07146888.1| DNA polymerase III, delta subunit [Escherichia coli MS 187-1] gi|300460643|gb|EFK24136.1| DNA polymerase III, delta subunit [Escherichia coli MS 187-1] Length = 319 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 30 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNGAINEQLLTLTGLLHDDLLLIV- 88 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 89 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 143 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 144 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 202 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 203 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 258 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 259 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 290 >gi|210633895|ref|ZP_03297910.1| hypothetical protein COLSTE_01827 [Collinsella stercoris DSM 13279] gi|210159064|gb|EEA90035.1| hypothetical protein COLSTE_01827 [Collinsella stercoris DSM 13279] Length = 321 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 115/294 (39%), Gaps = 15/294 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSL 79 ++ GSD+ + + + + T F+ L+ ++ K+ +N+ + Sbjct: 8 PGYLIVGSDELKSSHAVERMRSRLEKTGMAEFN---LDERDMAKDPQIDDIIASLNTFPM 64 Query: 80 FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 ++ +++++ N K V + L E + ++ + + KN L K +K + Sbjct: 65 GAEFRLVILTNCDKLPKAVSEPLVEYFSNPSPTTVCLVVATSLAKNTRLYKAIKKLGAKA 124 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I C P + + + KS+ A + L+A G + NEL+KL+S Sbjct: 125 IIECAPKKTWEMPPQVVKMAAAHGKSMGIPAAEALVARSGENTRMLDNELKKLASMVEGP 184 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLASKMPSHALLHGFLQK 257 IT V+ + T + E +NA + ++ L S++ +LL L++ Sbjct: 185 -EITLADVERHVMRTAEVKPWEFLNAVAARDLARSLELLALQPAKSEVRLWSLLVTRLRE 243 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + + + S ++ +Q +N L + R W + + + L Sbjct: 244 LIIAKSLDARGQGSQLASTLGVQS------WQVKNHLGWA-RRWRMDELLDALT 290 >gi|86132283|ref|ZP_01050878.1| DNA polymerase III delta subunit [Dokdonia donghaensis MED134] gi|85817202|gb|EAQ38385.1| DNA polymerase III delta subunit [Dokdonia donghaensis MED134] Length = 334 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 100/264 (37%), Gaps = 10/264 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + + N+ F+ VVL ++ I + + + Sbjct: 18 PIYFLSGEEPYFIDQITDYIEHNLLDEAEKGFNQVVLYGRDVS--IEDIVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFT-SVL 138 ++++++++ + ++ L E + ++++ K ++ K L K + Sbjct: 76 ERQVVIVKEAQDLSRTIEKLAEYVKNPQPTTVLVVAYKYKKLDKRKGLSKALKTHGVHYE 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + Y + + L+ I +A Q+L+ LG D NEL KL + Sbjct: 136 SKKLYENQVGD---WLRRVLIDEGYHIQPKAAQMLVDYLGNDLSKVVNELNKLMLILPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT Q +++ I + I E+ A + + A +A +F + P + Sbjct: 193 SEITPQAIEENIGISKDFNIFELRKAISEKDVVKAQRIAQYFTQNPKDNPLVLTVGQLFS 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280 F + K H + + + K + Sbjct: 253 LFSSILKYHGLPQKDKATVAKTLG 276 >gi|325203795|gb|ADY99248.1| DNA polymerase III, delta subunit [Neisseria meningitidis M01-240355] Length = 332 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|115350605|ref|YP_772444.1| DNA polymerase III subunit delta [Burkholderia ambifaria AMMD] gi|115280593|gb|ABI86110.1| DNA polymerase III, delta subunit [Burkholderia ambifaria AMMD] Length = 364 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307 >gi|294506395|ref|YP_003570453.1| DNA polymerase III delta subunit [Salinibacter ruber M8] gi|294342723|emb|CBH23501.1| DNA polymerase III delta subunit [Salinibacter ruber M8] Length = 347 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 98/260 (37%), Gaps = 17/260 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F+G + LI EL F+L V+ E + S + Sbjct: 23 PLYFFFGEETFLIDELQELLIDEALDPSQHDFNLDVVYGSETEA--SEVIGLCQGFPAGA 80 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138 K+++++ + ++ + I+++ + + R + E T Sbjct: 81 PKRVVVVREFEKLEN-NRQFKDYAAQPNPQSIVLLACTSKPNLSA-HPYRALKEHATWSE 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 S Y DN+ + I++ + I +A Q+L +G D + +E++KL ++ + Sbjct: 139 FESPY-DNE--MPGWIQDYVQGQGYEIKPKAVQMLADYVGTDLQRAASEIEKLITFAGDA 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-------HALL 251 +T V T + E+ +A +G+ +A + D L A+L Sbjct: 196 TRLTADDVLAASGQTREFNVFELQSALGEGRPADAQRIVDRILQQASNPRSEAIMMVAVL 255 Query: 252 HGFLQKFQLLEKIHIIKECS 271 +G+ K L+K ++E Sbjct: 256 NGYFDKLWKLQKPGALRENK 275 >gi|84394386|ref|ZP_00993105.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01] gi|84374988|gb|EAP91916.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01] Length = 341 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ L+ E +K F A++ + + ++ + SLFS Sbjct: 18 NVYLIFGNEPLLLQESREAIQKAAKQQG---FEERHRFAIDNSLDWNQVYDCTQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138 ++II +E + L I + ++++ ++ K K + ++ Sbjct: 75 SRQIIELELPESGVNAAIAKELLAISEHIHSDILLVLIGTKLTKAQESAKWFKALSNQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +SC + L ++ S EA Q+L G+ A L+KL+ D Sbjct: 135 WVSCLTPDVSRLPQFVQARCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T +++ + + +A + GK A + A + LL ++ Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 LL + + ++ + ++ +K I K+ + +L + + + + Sbjct: 254 ALLLQ--MQQQMKQMPIGQVFEKHR--IWQSKKPLYNAALTRVSISQLHSLFALLTQAEL 309 Query: 319 LAR 321 + + Sbjct: 310 MTK 312 >gi|300865554|ref|ZP_07110333.1| DNA polymerase III subunit delta [Oscillatoria sp. PCC 6506] gi|300336426|emb|CBN55483.1| DNA polymerase III subunit delta [Oscillatoria sp. PCC 6506] Length = 325 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 102/293 (34%), Gaps = 17/293 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++F+G D + + ++ ++ + F+ + + IS N+ + + Sbjct: 3 IYLFWGEDDFSLTQAVDTLRQKVIDPNWASFNYDKILPDQGDAVISAL-NQAMTPPFGAG 61 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + + + + ++ L + + ++++ + K ++ L+ S Sbjct: 62 SRFVWLADTPITQQCSQELFAELERTLPVIPSTTVLLLTTRN-KPDSRLKSTKFLLKSAE 120 Query: 139 A-----ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I + + L + + ++ A +L +G D +EL KL Sbjct: 121 VREFSPIPPWKTEE--LAKRVRQVAEGRGVKLTPAAIALLAECVGNDTRQLNSELDKLEL 178 Query: 194 YCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 Y + ++ + ++ ++ + A QG A+ L + P+ ++ Sbjct: 179 YAGNSNQPLGDEAIAALVRSNTQNSLQ-LAAAIRQGNTAQALQLVAELIGHNEPALKIVA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 +F++ + + + ++ I + + P + ++ ++ Sbjct: 238 TLTTQFRIWLWVKLGTQAGE--PDEKIAQAAEISNPKRIYFFRQEVKSLTVEK 288 >gi|172059638|ref|YP_001807290.1| DNA polymerase III subunit delta [Burkholderia ambifaria MC40-6] gi|171992155|gb|ACB63074.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MC40-6] Length = 364 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFAALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307 >gi|291567165|dbj|BAI89437.1| DNA polymerase III delta subunit [Arthrospira platensis NIES-39] Length = 327 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 106/284 (37%), Gaps = 19/284 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D + + ++ ++++ F+ + IS N+ + Sbjct: 2 PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60 Query: 82 KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 +++ + N + ++L L+ + ++ S +K L+K A+ Sbjct: 61 GHRLVWLVNTPLTQHCSPEILQELDRTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYAQ 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 AI + ++ L + E + E+ + L +G D E++KL Sbjct: 121 -VKDFSAIPPWKTDQ--LEQRVREVAQQLGVKLKPESVEFLAEAVGNDTRQLYGEMEKLK 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + + + +I + ++ A +GK A+ L +A P+ +L Sbjct: 178 LYADTIDRPLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLIADLIAHNEPALKIL 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291 + +F+ + ++ E ++I + E K I +K+ Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280 >gi|283780891|ref|YP_003371646.1| DNA polymerase III subunit delta [Pirellula staleyi DSM 6068] gi|283439344|gb|ADB17786.1| DNA polymerase III, delta subunit [Pirellula staleyi DSM 6068] Length = 370 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 125/337 (37%), Gaps = 32/337 (9%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 TI + F+ + + +G ++ L ++ + K ++ + D ++ E Sbjct: 4 TITAFDFLA-PGQKPASLSGICALFGDERFLRQLVLAKLVKLVTDSSGDDLY-TKVDVSE 61 Query: 63 IQKNISTFWNEINSTSLFSK--KKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSN 119 +E+++ +LF +++++E+ + LE+ K+ ++++ + Sbjct: 62 RPIAWRDIADELSTANLFGGGGARLVVLESADSWVSAHRAELEDWAAKSKPQGLLVLVVD 121 Query: 120 EIKKNNTLRKIAEKF---------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 E N L K ++ + + D ++E + + +S+ A Sbjct: 122 EWPSNTRLYKAMDQSHLQVDCRLPQKAVGKNKVTDEGAICRWVVERAKSVYGIGLSQHAS 181 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 + LL G +L KLS D + + V+ + ++I+A ++G+ Sbjct: 182 EKLLELTGPSMGMLDQDLAKLSLLAGGDGRVGVELVESAVGGWRAQSNWDLIDAALEGRA 241 Query: 231 YNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 +AI + L S A+ L++F + + E S + Sbjct: 242 ADAISQLEKLLHSGEHPLAIFGSLSWSLRRFAQAARHYQDAEDSGRRIQ----------- 290 Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 ++ + + + W + +++ ++ I L RK+ Sbjct: 291 -LREALTEAGFKEWPQGAMQKAEQRL---IALGRKRA 323 >gi|162453574|ref|YP_001615941.1| putative DNA polymerase III, delta subunit [Sorangium cellulosum 'So ce 56'] gi|161164156|emb|CAN95461.1| putative DNA polymerase III, delta subunit [Sorangium cellulosum 'So ce 56'] Length = 358 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 43/345 (12%), Positives = 112/345 (32%), Gaps = 36/345 (10%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V++ G ++ L+ +++ ++ + F+ A + + + + Sbjct: 16 RPVYLVLGEERWLVDRVVSAIREAAAKGGIAGFNEDKFTAGD--APVESILGAARMLPMM 73 Query: 81 SKKKIILIEN-----------------------LSTEKKV------LDCLEEIIIKNICN 111 + ++ +L+ S ++ V LD L E + Sbjct: 74 APRRFVLVRGVDRWEKKDDGDDGEGDDERGASGASGKRGVSKQLSPLDALAEYAKAPSPS 133 Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 ++++ + ++ L A+K ++ C P N+ L I I+ + Sbjct: 134 AVLVLVATKLHGQRRLVTAAKKGDFLV--GCEPLNRRALPGFIATVAREKGNPIAPDVAD 191 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 L G + + L++LS Y ITE + ++ + E+I+A + ++ Sbjct: 192 QLAELAGPELGYVVDALERLSLYVGPKQPITEDAIAQVVIRVRQSTVWELIDALGKRRLD 251 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 A+ + LL + + K + + P K Sbjct: 252 RALAALADAYDPRDGGLRLLGAVSWSVRQMVKFESALAGG---ASQAEAAQRAGVAPFKA 308 Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 N + +S+R K + + + + + + ++ ++ Sbjct: 309 NDVAQSVRQLPKGALAGWMRVLAETDLALKSSRRPAQAVLETMLM 353 >gi|124006637|ref|ZP_01691469.1| DNA polymerase III, delta subunit [Microscilla marina ATCC 23134] gi|123987792|gb|EAY27483.1| DNA polymerase III, delta subunit [Microscilla marina ATCC 23134] Length = 353 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 117/310 (37%), Gaps = 19/310 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + + ++ + +KN+ + F+ +VL + N+ T + + Sbjct: 31 PIYFLHGDESYYLDQISDFIEKNVLQEHEKGFNQIVLYGKDT--NLGTIVQNARRFPMMA 88 Query: 82 KKKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKF 134 +K++++++ ++ +E I + + +++ KN TL K+ +K Sbjct: 89 EKQVVIVKEAQQLADWSKADSKKIIEAYIKQPQPSTVLVFNHKHKSFNKNTTLYKLFDKQ 148 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + + IE + +A +L ++G D + E+ KL Sbjct: 149 --AVVVESKKIREHQVGGWIEGYFKQKGYQANFKATAMLTESIGADLGRLQTEIDKLLLN 206 Query: 195 CLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALL 251 + I E V++ + + I E+ A Y + ++ A+ P + Sbjct: 207 VNDQSKPIDEHLVEEHVGISKAYNIFELQKALGVKDWYKIRQILMYWEANPKSQPLIPTI 266 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 Q F L H + + S+ + K+++ + + ++R ++ V +H Sbjct: 267 AMIFQYFCKLLVGHRVTDKSDQNLAKVLKVS--PYFVKDYKV---AMRHYSLGKVVHIIH 321 Query: 312 KIDHRIHLAR 321 + ++ Sbjct: 322 YLREADLQSK 331 >gi|283784419|ref|YP_003364284.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168] gi|282947873|emb|CBG87434.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168] Length = 343 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 20/266 (7%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + +++ + SLF+ ++ ++L+ + + L + + ++I+ + Sbjct: 60 DWNALFSQCQAMSLFASRQTLLLLLPENGPNAAINEQLATLTQLLHDDLLLIV------R 113 Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N L K E + A++ C L + + A Q+L Sbjct: 114 GNKLTKAQENAAWISALADRSVLVSCQTPEHAQLPRWVAARAKQKNLQLDDAANQLLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALVMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R +L E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMLGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L + +R+ + + ++ Sbjct: 289 ALNRLSPAQLRQAVQLLTRTELTLKQ 314 >gi|330815529|ref|YP_004359234.1| DNA polymerase III [Burkholderia gladioli BSR3] gi|327367922|gb|AEA59278.1| DNA polymerase III [Burkholderia gladioli BSR3] Length = 385 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + S+ + + S+ + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAGFTERSVFTVERSF---DWSSLLGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAGAGNPEVLMLVTLPRLDAATQKSAWFTALGNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAAQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + V+D + + + ++ A + G + D +L Sbjct: 195 LYPSGTLAFEQVQDAVLNVARYDVFKLNEAMLAGDAGRLARMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I E ++++ + + ++ +L + ++ + L Sbjct: 255 VEELRTLLRIKRGIEA-GKPLAVLVRENR--VWGPRERLIGPALSRVTEPVLEKAL 307 >gi|315635074|ref|ZP_07890354.1| DNA-directed DNA polymerase III delta subunit [Aggregatibacter segnis ATCC 33393] gi|315476195|gb|EFU66947.1| DNA-directed DNA polymerase III delta subunit [Aggregatibacter segnis ATCC 33393] Length = 346 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 115/318 (36%), Gaps = 28/318 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G D LI E ++ ++ D + +NA + + + ++ S LF Sbjct: 20 LYFLVGEDPLLIEESLDAIQQAAMKALFDEKIQLEINAST---DWNDLFEQVQSMGLFFN 76 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEK------- 133 K+II++ + + L ++ + I ++ + + + L K EK Sbjct: 77 KQIIVL-------DLPENLTALLQNKLSEFISLLTPDVLPVFRFAKLTKTMEKQAWFVAA 129 Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + I+C N L + SI +EA Q+L + + +A + LQ Sbjct: 130 NQYEPQAIVINCQTPNAEQLPRWVVNRAKSLGLSIEQEAVQLLCYSYENNLLALKQTLQL 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L D +T V ++ + V + ++A + GK A + + + L Sbjct: 190 LDL-LYPDHKLTFARVNSVVEQSSVFTPFQWVDAMLAGKASRACRILNGLKEEDVQPIVL 248 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305 L + L ++ + ++ + ++ + +R + ++++ Sbjct: 249 LRTLQRDLMTLLELSKTGQRPSLDSLLPTSQLREHFDRLKVWQNRRALFTQAVQRLTYRK 308 Query: 306 VRETLHKIDHRIHLARKK 323 + ++ A+++ Sbjct: 309 LYLFCQQLAEVERSAKQE 326 >gi|163781864|ref|ZP_02176864.1| hypothetical protein HG1285_03238 [Hydrogenivirga sp. 128-5-R1-1] gi|159883084|gb|EDP76588.1| hypothetical protein HG1285_03238 [Hydrogenivirga sp. 128-5-R1-1] Length = 338 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 120/307 (39%), Gaps = 24/307 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + +G ++ L+ LI++ K + F+L + LE+ ++ ++E + S ++K Sbjct: 23 LVHGEEEFLVRTLIDKLKNKFAEN----FTLTWGDELEL-GDLYELFSEGSIFSATTEKA 77 Query: 85 IIL------IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 +++ ++ L +KK + L +++ + + +++ R E + + Sbjct: 78 VVIMKFDEFLKKLGRKKKNTENLTDLLKNLKSTKLFAVVGHKLTAQELSR---EPYKTFS 134 Query: 139 AIS--CYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 A+ D + D++ + K I +EA +L+ GG+ + ++E +KL +Y Sbjct: 135 ALGDIILADRLPTKRVKDIVRKKFEREAKGIEEEALDLLVEMCGGNLMVLKHESEKLIAY 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + VK++ + ++I++ + + + P +L Sbjct: 195 SEGRK-VTREDVKNVCFPWEDHTLFDLIDSFFERDAERTLRVLRDAYRKGTPPIQILGML 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLH 311 L + + + + K+ + + L K + E L+ Sbjct: 254 SGYVTKLYVVQELLSEGERLDNALEKVGVKHQF--AKLKFKNYLDKTPKERARELLEALY 311 Query: 312 KIDHRIH 318 ++D+ I Sbjct: 312 RLDYAIK 318 >gi|170679792|ref|YP_001742756.1| DNA polymerase III subunit delta [Escherichia coli SMS-3-5] gi|170517510|gb|ACB15688.1| DNA polymerase III, delta subunit [Escherichia coli SMS-3-5] Length = 343 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ +++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|78065218|ref|YP_367987.1| DNA polymerase III subunit delta [Burkholderia sp. 383] gi|77965963|gb|ABB07343.1| DNA polymerase III, delta subunit [Burkholderia sp. 383] Length = 364 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 110/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLALQGQRAAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLERAL 307 >gi|332290731|ref|YP_004429340.1| DNA polymerase III, delta subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332168817|gb|AEE18072.1| DNA polymerase III, delta subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 334 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 100/264 (37%), Gaps = 10/264 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + + N+ F+ VVL ++ I + + + Sbjct: 18 PIYFLSGEEPYFIDQISDYIEHNLLDEAEKGFNQVVLYGRDVT--IEDIVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIA-EKFTSVL 138 ++++++++ + ++ L + + ++++ K ++ K L K E Sbjct: 76 ERQVVIVKEAQDLSRQIEKLADYVKNPQPTTVLVVAYKYKKLDKRKGLAKALKEYGVHYE 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + Y + + L+ I +A QIL+ LG D NEL KL + Sbjct: 136 SKKLYENQVGD---WLRRVLIDEGYHIQPKAAQILVDYLGNDLGKVINELNKLMLILPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT Q +++ I + I E+ A + I A +A +F + P + Sbjct: 193 SEITPQAIEENIGISKDFNIFELRKAISEKDIVKAQRIAQYFTQNPKDNPLVLTVSQLFS 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280 F + K H + + + + + Sbjct: 253 LFASILKYHGLPQKDKTTVARALG 276 >gi|326335571|ref|ZP_08201758.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692337|gb|EGD34289.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 345 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 122/321 (38%), Gaps = 16/321 (4%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 E K + + KN + ++ G I + N ++N+ F+ V+ +I Sbjct: 15 EVEKILAELKKNNYS--PIYYLSGEVPYFIDLISNYIEENVLSEEEKAFNQQVIYGKDIT 72 Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIK 122 I + + + +++++I+++ + + L + ++++ K +I Sbjct: 73 --IDSLIHYAREYPMMAQRRVIIVKEAQELSRTIAQLLPYVENPSPTTLLVLCYKYGKID 130 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 L K +K+ Y ++ I L +I++ A Q+L++ LG D Sbjct: 131 GKTKLAKELKKYVYFEGKKLYENDT---AKWISSYLKESGYTITQIASQLLISFLGTDLS 187 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 NEL KL + IT H++ I + + E+ NA Q I AI + +F Sbjct: 188 RIANELNKLKIILTKGTEITPAHIEQNIGISKDFNVYELQNAIGQKDIPKAIQIIKYFNE 247 Query: 243 S-KMPSHALL-HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + K A++ + F+ L I + S ++ ++ N +K L + Sbjct: 248 NQKDNPIAMITENLYRYFRNLF---IYSSSTGKSDAELAREMGINPYFLKDYRLAAA--K 302 Query: 301 WNKNLVRETLHKIDHRIHLAR 321 + + + I ++ Sbjct: 303 YPLRKISFCMEVIKEADLKSK 323 >gi|225849236|ref|YP_002729400.1| DNA polymerase III subunit delta [Sulfurihydrogenibium azorense Az-Fu1] gi|225643253|gb|ACN98303.1| DNA polymerase III, delta subunit superfamily [Sulfurihydrogenibium azorense Az-Fu1] Length = 330 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 115/330 (34%), Gaps = 45/330 (13%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSD---KGLIFELINQFKKNISITYHDPFSLVV 57 M I+ + +++ NL + + YG++ K L E + + F Sbjct: 1 MNEIKIQQLLKEY--NLSNLKPLILIYGNEELTKSLFLEKVKSTTASTV------FWGDS 52 Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC------LEEIIIKNICN 111 L+ T NE+ + SLF +K I+++N L LE + N+ Sbjct: 53 LDFK-------TLLNELGTKSLFQTEKTIIVKNFDEFVSNLKKDEIKLFLETLKKVNLPT 105 Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAI------SCYPDNKIHLMDLIEESLLIGQKSI 165 I++ S E + K +L + Y I+ L K I Sbjct: 106 RFIMVCSFEKIPSTEPYKTITTLADILVSTKLTPSAFY--------TSIKNKLSRESKKI 157 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 S+E + L++ L D ++NE++KL Y + IT++ + +I + + Sbjct: 158 SEEDLKYLVSLLNNDLTLAKNEIEKLLLYTADKDTITKEDIDAVITPKFEDNVFVFLTQF 217 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTE 283 + A+ + + + L + + + E K + T Sbjct: 218 FKKD-KTALKTLLNLIENGSHPFEIQSLILYQLEKTLYFKSLIEKGIDQEEAFKTVGITA 276 Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++++ + L++ + + + + + Sbjct: 277 P----IQKSNILNILKVLKEEDLEKLIKGL 302 >gi|71276303|ref|ZP_00652581.1| DNA polymerase III, delta subunit [Xylella fastidiosa Dixon] gi|71900279|ref|ZP_00682415.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1] gi|170730504|ref|YP_001775937.1| DNA polymerase III subunit delta [Xylella fastidiosa M12] gi|71162911|gb|EAO12635.1| DNA polymerase III, delta subunit [Xylella fastidiosa Dixon] gi|71729927|gb|EAO32022.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1] gi|167965297|gb|ACA12307.1| DNA polymerase III delta subunit [Xylella fastidiosa M12] Length = 343 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 101/305 (33%), Gaps = 12/305 (3%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + + ++ G + + E + + + + + + Sbjct: 2 ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + N+ SLFS +++I I K+ + + + I++I NE Sbjct: 60 F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117 Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 K + K + + I+ + L D I L + + L L G Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A+ E+ KL+ + L+ + ++ + DT + + A + G+ I + Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 A ALL +++ + K + ++ + I ++ + +L+ Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWAKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292 Query: 300 IWNKN 304 Sbjct: 293 RHTSP 297 >gi|20807423|ref|NP_622594.1| DNA polymerase III delta subunit [Thermoanaerobacter tengcongensis MB4] gi|20515945|gb|AAM24198.1| DNA polymerase III delta subunit [Thermoanaerobacter tengcongensis MB4] Length = 338 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 124/312 (39%), Gaps = 19/312 (6%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F++ K +++FYG ++ L+ + + + K + + + + +V+ ++ + Sbjct: 5 EFVESIKKGQIA--PLYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYV 62 Query: 68 STFWNEINSTSLFSKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKS 118 + FS KI++++N + K++ D + ++ N ++++ Sbjct: 63 EAIIENCETLPFFSNYKIVVVKNEEEQLSKIGDKELKRLTDYFKNRVLGNTSLVVVVVSG 122 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 +I L K EK +V+ P+ ++ + E+ L+ N+ Sbjct: 123 EKIDSRKKLYKFMEKEAAVVEFKKLTPEEAVNYAGYFLKKHGKKAAKKDVES---LVKNI 179 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G D + NEL+K+ +Y + + + ++++ T + ++NA K A Sbjct: 180 GTDLYSIVNELEKVIAYSEGE-TLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 L+ +L ++ +L+ K+ + +F+K + I + + Sbjct: 239 YALLSKGEVPLIILTMIARQIRLIAKLKSL---EGKAFDKKSIASYLGIPFFAVDDIVRQ 295 Query: 298 LRIWNKNLVRET 309 +++ + + + Sbjct: 296 SKLFTREDLYKA 307 >gi|206561708|ref|YP_002232473.1| DNA polymerase III subunit delta [Burkholderia cenocepacia J2315] gi|198037750|emb|CAR53694.1| putative DNA polymerase III delta subunit [Burkholderia cenocepacia J2315] Length = 364 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRAAPGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307 >gi|218699012|ref|YP_002406641.1| DNA polymerase III subunit delta [Escherichia coli IAI39] gi|218368998|emb|CAR16752.1| DNA polymerase III, delta subunit [Escherichia coli IAI39] Length = 343 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 100/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + + L + + ++I+ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPDNGPNAAINEQLLTLTGLLHDDLLLIV- 112 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + + L K E A++ C + L + + A Sbjct: 113 -----RGSKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPHWVAARAKQLNLELDDAAN 167 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 283 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|300907816|ref|ZP_07125433.1| DNA polymerase III, delta subunit [Escherichia coli MS 84-1] gi|300400505|gb|EFJ84043.1| DNA polymerase III, delta subunit [Escherichia coli MS 84-1] Length = 326 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 37 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 95 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 96 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 150 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 151 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 209 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 210 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 265 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 266 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 297 >gi|284051890|ref|ZP_06382100.1| DNA polymerase III subunit delta [Arthrospira platensis str. Paraca] Length = 327 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 106/284 (37%), Gaps = 19/284 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D + + ++ ++++ F+ + IS N+ + Sbjct: 2 PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60 Query: 82 KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 +++ + N + ++L L+ + ++ S +K L+K A+ Sbjct: 61 GHRLVWLVNTPLTQHCSPEILQELDRTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYAQ 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 AI + ++ L + E + E+ + L +G D E++KL Sbjct: 121 -VKDFSAIPPWKTDQ--LEQRVREVAQQLGVKLKPESVEFLAEAVGNDTRQLYGEMEKLK 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + + + +I + ++ A +GK A+ L +A P+ +L Sbjct: 178 LYADTIDRPLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLIADLIAHNEPALKIL 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291 + +F+ + ++ E ++I + E K I +K+ Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280 >gi|158320259|ref|YP_001512766.1| DNA polymerase III, delta subunit [Alkaliphilus oremlandii OhILAs] gi|158140458|gb|ABW18770.1| DNA polymerase III, delta subunit [Alkaliphilus oremlandii OhILAs] Length = 344 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 118/305 (38%), Gaps = 19/305 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F G + LI + + + K + + +L+ E+ I + + + Sbjct: 17 NVYLFAGEEVFLIDDALERLKSTVLNAGFQELNFTILDGKEVS--IHQITDACETLPFMA 74 Query: 82 KKKIILIENL----STEKKVLDCLEEIII---KNICNHIIIIKSNEIKKNNTLRKIAEKF 134 ++K++ ++N+ S K + + E+ II K I + ++ ++ + + E Sbjct: 75 ERKLVYLKNMDVFQSKSKSISEEQEQYIIDYIKKIPDTTTLVFWGNTTVDSRKKIVKEIN 134 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------GDRIASRNE 187 + C + L I++ K I + + NL + NE Sbjct: 135 KYGHFVECSKLTEDELGKWIKKMFKAYGKIIEAKEISFIKGNLDYLGKTSTQTLLDVENE 194 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+K+ S+ + +T +H++ I+ I +++++ ++I ++ L P Sbjct: 195 LKKIISFMGQASEVTTEHIEKILTSNFQNNIFKLLDSIEGRNSSDSIKRLNYILEDGEPI 254 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 +L + + + ++ E S + T+ NI P + R + ++ Sbjct: 255 LKILATLGNQIKNILFSKVLLEEGYTSK---MIATKLNIHPFVASKCAAQSRRFTVERLK 311 Query: 308 ETLHK 312 E L+K Sbjct: 312 ELLNK 316 >gi|134294736|ref|YP_001118471.1| DNA polymerase III subunit delta [Burkholderia vietnamiensis G4] gi|134137893|gb|ABO53636.1| DNA polymerase III, delta subunit [Burkholderia vietnamiensis G4] Length = 364 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVAPGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLAFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIKRGA-SAGKPLATLLRENR--VWGPRERLIAPALNRVSEAMLEKAL 307 >gi|113869091|ref|YP_727580.1| DNA polymerase III subunit delta [Ralstonia eutropha H16] gi|113527867|emb|CAJ94212.1| DNA polymerase III delta subunit [Ralstonia eutropha H16] Length = 352 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 108/291 (37%), Gaps = 15/291 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ E +++ + FS + E + S SLF Sbjct: 22 PLYVVHGDEHLLVLEAVDRLRAAAREAG---FSERDVLVAERGFHWGQLVEAQQSMSLFG 78 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 +KI+ I + K + L + + + ++++ + + + + Sbjct: 79 DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVLLVTLPRLDFAASKSAWFQALEGAGV 138 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSS 193 +I ++ L + E L + Q+ + + A Q + + G+ +A+ E+QKL Sbjct: 139 SIKVDSVDRTRLPAWVGERLSLQQQRVEGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +T V D + + + ++ + + G + + + + + +L Sbjct: 199 -LYPPGELTFDQVHDAVLNVARYDVFKLSESMLSGDVPRLVRMLEGLRGEGEATVLVLWA 257 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 ++ ++L K+ + ++++ + + ++ ++ + + Sbjct: 258 LTEEIRVLSKVR-QGLAAGKPAGVLMRELR--VWGPRERLVPQAAQRLAQP 305 >gi|331682064|ref|ZP_08382688.1| DNA polymerase III, delta subunit [Escherichia coli H299] gi|331080743|gb|EGI51917.1| DNA polymerase III, delta subunit [Escherichia coli H299] Length = 343 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ +++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLARTELTLKQ 314 >gi|163791514|ref|ZP_02185919.1| DNA polymerase III subunit delta [Carnobacterium sp. AT7] gi|159873194|gb|EDP67293.1| DNA polymerase III subunit delta [Carnobacterium sp. AT7] Length = 305 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 89/242 (36%), Gaps = 12/242 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIEN---LSTEKKVLDC------LEEIIIKNICNHIIIIK 117 I T + S F +++++ ++ L+ EK E + + + +++ Sbjct: 60 IGTALEDAESIPFFGERRVVFVDRPVFLTGEKTKSKIEHDLKWFENYLTRPSESTTLVLF 119 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + K + + + + ++ + I++++ S EA ++ + Sbjct: 120 APYEKLDERKKITKLLKKTATVLEVNALSEKEMRKYIKDTISNEGYRYSPEAFELFIQLT 179 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 + EL KL Y E IT + V++++ + I + ++ + A+ L Sbjct: 180 DAKLSVAMGELPKLFLYAQETKFITIEAVQELVAKSLEQNIFALNEYVLKKDVGQALNLY 239 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 L K + +F+LL ++ I+ E I + + P + + + Sbjct: 240 QDLLLQKEDPIKINAIMTAQFRLLIQVKIL-EKKGYQQGDIAKLLK--THPYRVKLAIQQ 296 Query: 298 LR 299 +R Sbjct: 297 MR 298 >gi|300901149|ref|ZP_07119256.1| DNA polymerase III, delta subunit [Escherichia coli MS 198-1] gi|300355416|gb|EFJ71286.1| DNA polymerase III, delta subunit [Escherichia coli MS 198-1] Length = 325 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 36 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 96 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 270 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 271 ALNRLSQPQLRQAVQLLTRTELTLKQ 296 >gi|145588422|ref|YP_001155019.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046828|gb|ABP33455.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 353 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 119/327 (36%), Gaps = 23/327 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + KS + ++IF G + L+ E ++Q ++++ F+ + Sbjct: 1 MVKVDALQTHLKSLNAGGVMGSLYIFSGDEPLLMMEAMDQL-RSVAKKLG--FTEREVLL 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIII--------KNIC 110 E + S N + SLF K+ + I + D L++ + Sbjct: 58 QERGFDWSALLNAGQTMSLFGDKRWVELRIPTGKPGRDGADALKQFAAQMESQANSSDGP 117 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSIS--- 166 + ++ I + +AI ++ HL I L ++ + Sbjct: 118 DTVVCIVLPRLDGKTKTSAWFSALDDAGMAIQIDSLDRGHLPHWISGRLKKQEQEVEGGP 177 Query: 167 --KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + A + + + G+ IA+ E+ KL +TE+ V+ I + E+ A Sbjct: 178 EGQRALEFIADQVEGNLIAAHQEILKLGL-LYPSGTLTEEQVRSSILKVARYNVFELTEA 236 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 + G + + D P +L ++ +LL K+ + + S +++++ Sbjct: 237 MLAGDLPRLNRMLDGLKGEGEPLVLILWSVTEELRLLSKLKMASDA-GESMQQLMRANR- 294 Query: 285 NIIPMKRNILQESLRIWNKNLVRETLH 311 I K + +L+ +R + Sbjct: 295 -IWGNKERLYPSALKRIQPLKLRRAMQ 320 >gi|205351933|ref|YP_002225734.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271714|emb|CAR36546.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626973|gb|EGE33316.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ +L + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGNALLRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|117619441|ref|YP_857741.1| DNA polymerase III, delta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560848|gb|ABK37796.1| DNA polymerase III, delta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 109/303 (35%), Gaps = 18/303 (5%) Query: 22 FVFIFYGSDKGLIFELI---NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 ++ +G + L E I Q + F + E + + ++ + S Sbjct: 18 PCYLIFGDEPLLKLEAIDAVRQVARKQGFDERHSFVV------EQGLDWNQVYDACQAMS 71 Query: 79 LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 LFS ++II +E + +K++ + EI + + ++++ N + + +K S Sbjct: 72 LFSARQIIELELPAKVDKELAARISEIGKQLHPDLLLVLSGNRLNQTQMKAAWFDKLSQS 131 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + +A + + G+ +A+ E++KL+ Sbjct: 132 GTYVPVNHPEPRFFPRWMSARFQRFGLKALPDAVNFMCHSYEGNLLAASQEIEKLTLLSP 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 I+ ++++ I ++I+ ++GK+ A + A L + Sbjct: 192 PQP-ISVAYLQETIIRHAHFTPFQLIDTLLEGKVNRAQRILLALRAEGTEPGMLAWALCR 250 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKI 313 + + L ++ + E + I ++ ++Q++L + + + ++ Sbjct: 251 ELEQLTELALAARAGQPLVEH-FSRLR--IWQSRQQLIQQALTRLPFAKLQQLWQLMARL 307 Query: 314 DHR 316 D Sbjct: 308 DDA 310 >gi|94263019|ref|ZP_01286838.1| DNA polymerase III, delta [delta proteobacterium MLMS-1] gi|93456562|gb|EAT06670.1| DNA polymerase III, delta [delta proteobacterium MLMS-1] Length = 467 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 18/254 (7%) Query: 91 LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL--------AISC 142 L + N+ +++ + K L K E+ VL + Sbjct: 180 AGGGDAAETYLAALEGGLPANNHLLLLTETADKRKKLYKYLEQHGVVLDLSVAAGSSAPA 239 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + K L DL +L K ++ +A LL +G +A E +KL+ Y + + Sbjct: 240 RKEQKALLADLAHRTLAEFDKKLAADALDPLLERIGFYPVAVVMECEKLALYVGDRPRVE 299 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V ++ T I E+ A G + L A M A+L G + L Sbjct: 300 RRDVDTMVGRTREEAIYELSEAYSAGDWQRGLALLKRLRAGGMHPLAMLAGLRNHIRKLL 359 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNK--NLVRETLHKI------ 313 + E + +K+ +P + Q + R W L+++ Sbjct: 360 LARAVISGGGFQPEMPFPRFQKSFLPKLKEQRQAAGGRGWPGSFPTHPYALYQLFRQAAA 419 Query: 314 -DHRIHLARKKKYL 326 D AR L Sbjct: 420 HDTTSLQARLADLL 433 >gi|311280456|ref|YP_003942687.1| DNA polymerase III, delta subunit [Enterobacter cloacae SCF1] gi|308749651|gb|ADO49403.1| DNA polymerase III, delta subunit [Enterobacter cloacae SCF1] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 98/264 (37%), Gaps = 8/264 (3%) Query: 62 EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + + + ++ SLF+ ++ ++L+ + + L +I + ++I++ N Sbjct: 56 DTSTDWNALFSLSQERSLFASRQTLMLLLPENGPNAAINEQLNALIGLLHDDLLLIVRGN 115 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ K + ++C + L + + + A Q+L Sbjct: 116 KLTKAQENAAWFTALAQRSVQVACQTPEQAQLPRWLAARAKQQNLHLDEAASQLLCYCYE 175 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 176 GNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRALHILQ 234 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 LL ++ LL + ++ ++ + K + +R ++ ++L Sbjct: 235 QLRLEGGEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPLVSDAL 290 Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322 + + +R+ + + ++ Sbjct: 291 NRLSADQLRQCVSLLARTELTLKQ 314 >gi|320178430|gb|EFW53398.1| DNA polymerase III delta subunit [Shigella boydii ATCC 9905] gi|323170768|gb|EFZ56418.1| DNA polymerase III, delta subunit [Escherichia coli LT-68] gi|323185005|gb|EFZ70372.1| DNA polymerase III, delta subunit [Escherichia coli 1357] gi|332096771|gb|EGJ01761.1| DNA polymerase III, delta subunit [Shigella dysenteriae 155-74] Length = 340 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 286 ALNRLSQPQLRQAVQLLTRTELTLKQ 311 >gi|148543878|ref|YP_001271248.1| DNA polymerase III, delta subunit [Lactobacillus reuteri DSM 20016] gi|184153278|ref|YP_001841619.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri JCM 1112] gi|227364784|ref|ZP_03848833.1| DNA polymerase III, delta subunit [Lactobacillus reuteri MM2-3] gi|325682589|ref|ZP_08162106.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri MM4-1A] gi|148530912|gb|ABQ82911.1| DNA polymerase III, delta subunit [Lactobacillus reuteri DSM 20016] gi|183224622|dbj|BAG25139.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri JCM 1112] gi|227070243|gb|EEI08617.1| DNA polymerase III, delta subunit [Lactobacillus reuteri MM2-3] gi|324978428|gb|EGC15378.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri MM4-1A] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 130/336 (38%), Gaps = 27/336 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 V++ G + L + I+ F I ++ + +++ + ++ +T F Sbjct: 18 VYLILGKQQVLQQQAIDAFTSLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++I L+ EK+ LD L++ + + I++ + ++ + K Sbjct: 74 ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFTAPYEKLDGRKGIVKQ 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + + P ++ + L IS+ A L+ D L K Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + I + V ++ + + +++ A ++ A+ L LA + P + Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309 + +F+LL +I + ++ + + N+ P + + ++ R ++ + Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308 Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 L +I+ + ++ L + +L +Q + Sbjct: 309 LGLIRIEQSLKTTQRDPSL---LFQLFMLQYSQQSK 341 >gi|188491767|ref|ZP_02999037.1| DNA polymerase III, delta subunit [Escherichia coli 53638] gi|188486966|gb|EDU62069.1| DNA polymerase III, delta subunit [Escherichia coli 53638] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAISLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|309378788|emb|CBX22614.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 332 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 94/294 (31%), Gaps = 11/294 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + +A + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKEQGYLNREVYTADASF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ ++G + L D LL + Sbjct: 193 HTLNIDEAQTAVANVARFDAFQLAGTWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDI 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311 + L ++ S + + + + L +++ + + + L Sbjct: 253 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302 >gi|315127067|ref|YP_004069070.1| DNA polymerase III subunit delta [Pseudoalteromonas sp. SM9913] gi|315015581|gb|ADT68919.1| DNA polymerase III subunit delta [Pseudoalteromonas sp. SM9913] Length = 346 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 15/237 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVV-LNALEIQKNISTFWNEINST 77 ++ +G + + + + D F+L + EI + S Sbjct: 18 PFYLVFGEEPFQEAQCVQLIRDTAKAQGFDEVIKFTLAQGFDWQEIIA-------QYQSM 70 Query: 78 SLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134 SLFS + II + + ++I+ + I+I+K + ++ + Sbjct: 71 SLFSARTIIELDLNQQKPGTPGANTFKKIVELENPDTILIVKGAKASQDVQRGAWFKALD 130 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 L + CYP + HL ++E +I EAK L+ G+ +A EL+KL+ Sbjct: 131 KHGLFVPCYPLSGNHLKRWLDEQCQRLSLNIQNEAKLSLINATEGNLLACYQELEKLAL- 189 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 D LIT+Q V + + I ++ +A + G AI + + + ++L Sbjct: 190 IHGDALITQQLVMQGLLNQAKFDIFDLNDALLNGHTAQAIKVLNKLASDNTEVVSIL 246 >gi|167920493|ref|ZP_02507584.1| DNA polymerase III subunit delta [Burkholderia pseudomallei BCC215] Length = 345 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|121634505|ref|YP_974750.1| DNA polymerase III subunit delta [Neisseria meningitidis FAM18] gi|120866211|emb|CAM09951.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis FAM18] gi|254669718|emb|CBA03866.1| DNA polymerase III, delta subunit [Neisseria meningitidis alpha153] gi|261392920|emb|CAX50505.1| DNA polymerase III delta subunit [Neisseria meningitidis 8013] gi|325131839|gb|EGC54539.1| DNA polymerase III, delta subunit [Neisseria meningitidis M6190] gi|325137889|gb|EGC60464.1| DNA polymerase III, delta subunit [Neisseria meningitidis ES14902] Length = 332 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|261414658|ref|YP_003248341.1| DNA polymerase III, delta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371114|gb|ACX73859.1| DNA polymerase III, delta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326686|gb|ADL25887.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 322 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 10/294 (3%) Query: 28 GSDKGLIFELINQF-KKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTSLFSKKK 84 G D+ + I +F + + DP + VL A + I +S S+FS ++ Sbjct: 7 GKDQFSKDKRIEKFLSETLGDRISDPMAKQVLYATDTNIASISDVIIEACDSVSMFSPEQ 66 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA--ISC 142 +I++ K + + + ++ + ++ L K K V + Sbjct: 67 VIVVRKAEALKTDDMKALAKWLPHAASGKLLFDFETLLASSELYKALAKVGKVEKFDVPK 126 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + + ++ K+I A Q L LG D E++K+ Y + IT Sbjct: 127 QYEMAEWISAVVPTHF---NKAIEPTASQYLAEALGNDTKLVSEEVEKIILYAPDCKKIT 183 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 VK ++ + EI + + L S + + + + L Sbjct: 184 LDLVKTMVVSQRDIPTYEIEGFFGMQNAKAYVQKLNELLNSGVDAIRISNTLYNYALSLL 243 Query: 263 KIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDH 315 + +S E+ +K KN +K+ E R W K L+ L ++ Sbjct: 244 N-YGSLTAKGVSPEEAAKKIGKNYYMFVKKGQAAECCRRWRKPLLVRVLRRLAD 296 >gi|320193047|gb|EFW67687.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str. EC1212] gi|326341391|gb|EGD65183.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str. 1044] Length = 340 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 286 ALNRLSQPQLRQAVQLLTRTELTLKQ 311 >gi|300937887|ref|ZP_07152678.1| DNA polymerase III, delta subunit [Escherichia coli MS 21-1] gi|300457087|gb|EFK20580.1| DNA polymerase III, delta subunit [Escherichia coli MS 21-1] Length = 332 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 43 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 101 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + + L K E A++ C + L + + A Sbjct: 102 -----RGSKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPHWVAARAKQLNLELDDAAN 156 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 157 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 215 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 216 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 271 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 272 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 303 >gi|293408766|ref|ZP_06652605.1| DNA polymerase III [Escherichia coli B354] gi|331672179|ref|ZP_08372971.1| DNA polymerase III, delta subunit [Escherichia coli TA280] gi|291471944|gb|EFF14427.1| DNA polymerase III [Escherichia coli B354] gi|331070646|gb|EGI42009.1| DNA polymerase III, delta subunit [Escherichia coli TA280] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|329296088|ref|ZP_08253424.1| DNA polymerase III subunit delta [Plautia stali symbiont] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 113/305 (37%), Gaps = 11/305 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H + G++ LI E + + + D V ++A Q + + S SLF Sbjct: 18 HACYFLTGNEPLLIQESADAIRAAAAQQGFDEHFSVSVDA---QTDWEAIFASYQSLSLF 74 Query: 81 SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 ++++ + + + + L ++ + +++++ ++ K + S Sbjct: 75 TQRQTLTLQLPENGPNAAIAEQLVKLAALLHSDIMLVLRMAKLIKAQENSAWFKALSASA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + C + L + Q SI A Q+L G+ +A L++LS Sbjct: 135 VLVPCQTPEQAQLPRWVAARAKALQLSIDDAAIQLLCYCYEGNLLALAQALERLSL-LWP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V++ + D ++A + GK A+ + LL + Sbjct: 194 DGKLTLPRVEEAVNDAAHFTPFHWVDALLAGKSKRALHILRQLQKEDSEVVILLRTLQRD 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 L + + ++ + ++ + I +R + E+L+ + +++ +H + Sbjct: 254 LLTLLQ--LQRQQAKQPLRTLMDQQR--IWQNRRALFTEALQRLDPQRLQQAVHLLAQLE 309 Query: 318 HLARK 322 ++ Sbjct: 310 LTMKQ 314 >gi|293413936|ref|ZP_06656585.1| DNA polymerase III [Escherichia coli B185] gi|291433994|gb|EFF06967.1| DNA polymerase III [Escherichia coli B185] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|218688463|ref|YP_002396675.1| DNA polymerase III subunit delta [Escherichia coli ED1a] gi|218426027|emb|CAR06844.1| DNA polymerase III, delta subunit [Escherichia coli ED1a] gi|222032400|emb|CAP75139.1| DNA polymerase III subunit delta [Escherichia coli LF82] gi|281177790|dbj|BAI54120.1| DNA polymerase III delta subunit [Escherichia coli SE15] gi|312945187|gb|ADR26014.1| DNA polymerase III subunit delta [Escherichia coli O83:H1 str. NRG 857C] Length = 343 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|241760059|ref|ZP_04758157.1| DNA polymerase III, delta subunit [Neisseria flavescens SK114] gi|241319513|gb|EER55943.1| DNA polymerase III, delta subunit [Neisseria flavescens SK114] Length = 333 Score = 80.4 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 90/265 (33%), Gaps = 29/265 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + E + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---- 135 K+ I I N K D L+ + + + +I +++K K Sbjct: 74 DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133 Query: 136 --SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 A++ Y L I+ L I EA + + G+ +A+R E++KL+ Sbjct: 134 VLEAKAVAPYA-----LPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLAL 188 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------F 240 + LI + + + ++ A ++G L D Sbjct: 189 LHPQGHLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWA 248 Query: 241 LASKMPSHALLHGFLQKFQLLEKIH 265 +A + + L L++ Q ++ + Sbjct: 249 VAEDIRTLIRLTAALKQGQNIQSLR 273 >gi|270263708|ref|ZP_06191977.1| hypothetical protein SOD_e03330 [Serratia odorifera 4Rx13] gi|270042592|gb|EFA15687.1| hypothetical protein SOD_e03330 [Serratia odorifera 4Rx13] Length = 344 Score = 80.4 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 113/302 (37%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + ++ + L+A + ++ + SLF+ + Sbjct: 21 YLLSGNEPLLLQESQDLIRQAAQQQQFTEHYSISLDAHT---DWDAIFSICQAMSLFASR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + +++ + + + L ++ + +++++ + K + + + Sbjct: 78 QTLLLIFPDNGPTAPLGEQLIKLAALLHDDILLMLRGPRLTKAQENSAWFKALSPNGAYV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC + L + + + + A Q+L G+ +A L++LS D Sbjct: 138 SCQTPEQAQLPRWVAQRAKTMKLELDDAANQLLCYCYEGNLLALSQALERLSL-LHPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A + + LL ++ Sbjct: 197 LTLPRVELAVNDAAHFTPFHWLDALLAGKSKRAWHILQQMQQEDVEPVILLRTLQRELLQ 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + +++ + + + + +RN++ ++L+ + +++ +H + Sbjct: 257 LLNLQRRM--ASVPLRTLFDQYK--VWQNRRNLVTQALQRLSGAQLQQAVHLLTQIEITL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|300920546|ref|ZP_07136971.1| DNA polymerase III, delta subunit [Escherichia coli MS 115-1] gi|300412448|gb|EFJ95758.1| DNA polymerase III, delta subunit [Escherichia coli MS 115-1] Length = 333 Score = 80.4 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 44 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 103 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 104 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 163 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 164 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 222 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 223 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 278 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 279 ALNRLSQPQLRQAVQLLTRTELTLKQ 304 >gi|253687579|ref|YP_003016769.1| DNA polymerase III, delta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754157|gb|ACT12233.1| DNA polymerase III, delta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 341 Score = 80.4 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 93/251 (37%), Gaps = 7/251 (2%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +GSD L+ E ++ K+ +L+ + ++ + SLF Sbjct: 18 RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFILDPHT---DWDAIFSTCQALSLF 74 Query: 81 SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ ++++ + + L ++ + ++I++ +++ K + Sbjct: 75 ASRQSLLLILPENGPNAAMSENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQDS 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + I+C + L + + + ++ ++A Q++ G+ +A L++LS Sbjct: 135 VYINCLTPEQAQLPRWVSQRAKSMKLTLDEQATQLICYCYEGNLLALSQALERLSL-LYP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + GK A + LL ++ Sbjct: 194 DGKLTLPRVESAVNDAAHFTPFHWLDALLAGKSKRAWHILQQLQQEDCEPVILLRTLQRE 253 Query: 258 FQLLEKIHIIK 268 L + Sbjct: 254 LLQLLALKRRM 264 >gi|261822389|ref|YP_003260495.1| DNA polymerase III subunit delta [Pectobacterium wasabiae WPP163] gi|261606402|gb|ACX88888.1| DNA polymerase III, delta subunit [Pectobacterium wasabiae WPP163] Length = 341 Score = 80.4 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 98/252 (38%), Gaps = 9/252 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ +GSD L+ E ++ K+ + + FS + L++ ++ + SL Sbjct: 18 RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTEWDAIFSTCQALSL 73 Query: 80 FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 F+ ++ ++++ + + L ++ + ++I++ +++ K + Sbjct: 74 FASRQSLLLILPENGPNAAMSENLIKLSGLLHPDILLILRGHKLTKAQENSAWFKALSQD 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C + L + + + ++ ++A Q++ G+ +A L++L+ Sbjct: 134 SVYINCLTPEQAQLPRWVAQRAKAMKLTLDEQATQLICYCYEGNLLALSQALERLAL-LY 192 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T V++ + D ++A + GK A + LL + Sbjct: 193 PDGKLTLPRVENAVNDAAHFTPFHWLDALLAGKTKRAWHILQQLKQEDCEPVILLRTLQR 252 Query: 257 KFQLLEKIHIIK 268 + L + Sbjct: 253 ELLQLLALKRRM 264 >gi|332524702|ref|ZP_08400901.1| DNA polymerase III subunit delta [Rubrivivax benzoatilyticus JA2] gi|332108010|gb|EGJ09234.1| DNA polymerase III subunit delta [Rubrivivax benzoatilyticus JA2] Length = 366 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 101/300 (33%), Gaps = 17/300 (5%) Query: 66 NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + S + SLF+ +++I I N K + L+ + + + ++ ++ Sbjct: 59 DWSGLLGAAQALSLFADRQLIEIRIPNGKPGKDGSEALQRYCQQLSPDVLTLVTLPKLDF 118 Query: 124 NNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANL 177 + + P + L + + L + ++ ++ + Sbjct: 119 QQQKSAWFAALDGAGVTLKVEPVERKALPAWLAQRLGRQGQRVASGEAGQQTLAFFADRV 178 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ ELQKL+ ++ + V+ + D + ++ A + G++ A+ + Sbjct: 179 EGNLLAAHQELQKLAL-LYPPGELSFEQVEAAVLDVARYDVFKLGEAVLAGQVARALRML 237 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE- 296 D A + + + L ++ + +++ + K + + Sbjct: 238 DGLRAEGEAPVLVHWTLAEDLRGLARVRAAVD-DGKPLPLALREAR--VWGTKEKLYERV 294 Query: 297 --SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN--IIFQTILYIAQTACKNNNFYKRT 352 +L + + +D + R + + + + +L + A + T Sbjct: 295 VPALAGHQTQHLVQAASIVDGIVKGLRHPDWPAEPWDALRRLVLMTVEAAAAAGTPTRGT 354 >gi|284009234|emb|CBA76330.1| DNA polymerase III subunit delta [Arsenophonus nasoniae] Length = 312 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 101/264 (38%), Gaps = 8/264 (3%) Query: 62 EIQKNISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + + T + S SLF+ ++I+++ + + L ++ + +++++ Sbjct: 22 DTSTDWDTIYRLSQSLSLFASRQILILILPESGPTAVIAEKLLKLAEILHSDLLLLLRGG 81 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ K +K + I+C + L + + ++ K+A Q+L + Sbjct: 82 KLTKAQENSAWCKKIAQDGVYINCLTPEQSRLTQWVTQRAKAMSVTLDKQANQLLCYSYE 141 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A L++LS D +T VK+ + + ++A + GKI + + Sbjct: 142 GNLLALNQALERLSL-LYPDGNLTLPRVKEAVNNAVHFTPYHWVDALLAGKIKRSWHILQ 200 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + LL ++ LL + ++ K+ + I +R ++ +L Sbjct: 201 QLQREDYEAVILLRIIQRELILLLTLKQQSNAKDLR--KLFDQHR--IWQARRPLINAAL 256 Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322 + ++ + I ++ Sbjct: 257 QRLPLRELQHAIQLITQAELHLKQ 280 >gi|191168693|ref|ZP_03030473.1| DNA polymerase III, delta subunit [Escherichia coli B7A] gi|194434455|ref|ZP_03066716.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1012] gi|218553182|ref|YP_002386095.1| DNA polymerase III subunit delta [Escherichia coli IAI1] gi|291281591|ref|YP_003498409.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str. CB9615] gi|293418751|ref|ZP_06661186.1| DNA polymerase III [Escherichia coli B088] gi|300817841|ref|ZP_07098055.1| DNA polymerase III, delta subunit [Escherichia coli MS 107-1] gi|300823044|ref|ZP_07103178.1| DNA polymerase III, delta subunit [Escherichia coli MS 119-7] gi|301302121|ref|ZP_07208254.1| DNA polymerase III, delta subunit [Escherichia coli MS 124-1] gi|306812928|ref|ZP_07447121.1| DNA polymerase III subunit delta [Escherichia coli NC101] gi|307312644|ref|ZP_07592276.1| DNA polymerase III, delta subunit [Escherichia coli W] gi|309795493|ref|ZP_07689910.1| DNA polymerase III, delta subunit [Escherichia coli MS 145-7] gi|331645798|ref|ZP_08346901.1| DNA polymerase III, delta subunit [Escherichia coli M605] gi|331651652|ref|ZP_08352671.1| DNA polymerase III, delta subunit [Escherichia coli M718] gi|331666993|ref|ZP_08367867.1| DNA polymerase III, delta subunit [Escherichia coli TA271] gi|331676299|ref|ZP_08377011.1| DNA polymerase III, delta subunit [Escherichia coli H591] gi|190901285|gb|EDV61054.1| DNA polymerase III, delta subunit [Escherichia coli B7A] gi|194417306|gb|EDX33414.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1012] gi|209777074|gb|ACI86849.1| DNA polymerase III delta subunit [Escherichia coli] gi|218359950|emb|CAQ97494.1| DNA polymerase III, delta subunit [Escherichia coli IAI1] gi|290761464|gb|ADD55425.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str. CB9615] gi|291325279|gb|EFE64694.1| DNA polymerase III [Escherichia coli B088] gi|300524393|gb|EFK45462.1| DNA polymerase III, delta subunit [Escherichia coli MS 119-7] gi|300529538|gb|EFK50600.1| DNA polymerase III, delta subunit [Escherichia coli MS 107-1] gi|300842673|gb|EFK70433.1| DNA polymerase III, delta subunit [Escherichia coli MS 124-1] gi|305853691|gb|EFM54130.1| DNA polymerase III subunit delta [Escherichia coli NC101] gi|306907346|gb|EFN37851.1| DNA polymerase III, delta subunit [Escherichia coli W] gi|308120868|gb|EFO58130.1| DNA polymerase III, delta subunit [Escherichia coli MS 145-7] gi|315059895|gb|ADT74222.1| DNA polymerase III, delta subunit [Escherichia coli W] gi|315255055|gb|EFU35023.1| DNA polymerase III, delta subunit [Escherichia coli MS 85-1] gi|320198234|gb|EFW72838.1| DNA polymerase III delta subunit [Escherichia coli EC4100B] gi|320654416|gb|EFX22463.1| DNA polymerase III subunit delta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660097|gb|EFX27627.1| DNA polymerase III subunit delta [Escherichia coli O55:H7 str. USDA 5905] gi|323379541|gb|ADX51809.1| DNA polymerase III, delta subunit [Escherichia coli KO11] gi|323945115|gb|EGB41177.1| DNA polymerase III [Escherichia coli H120] gi|324116714|gb|EGC10629.1| DNA polymerase III [Escherichia coli E1167] gi|331044550|gb|EGI16677.1| DNA polymerase III, delta subunit [Escherichia coli M605] gi|331049930|gb|EGI21988.1| DNA polymerase III, delta subunit [Escherichia coli M718] gi|331066217|gb|EGI38101.1| DNA polymerase III, delta subunit [Escherichia coli TA271] gi|331076357|gb|EGI47639.1| DNA polymerase III, delta subunit [Escherichia coli H591] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|317122998|ref|YP_004103001.1| DNA polymerase III subunit delta [Thermaerobacter marianensis DSM 12885] gi|315592978|gb|ADU52274.1| DNA polymerase III, delta subunit [Thermaerobacter marianensis DSM 12885] Length = 434 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 8/220 (3%) Query: 99 DCLEEIIIKNICNHIIIIK-SNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156 L + +++I ++ + +R++ A++C P L +++ Sbjct: 168 AALLAYLDDPAPTAVLVISHPGDVDGRRAVVRRL---RQRGWAVACEPLRDDALARWLQQ 224 Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 K + EA LL + D +E+ K+++Y + I ++ + Sbjct: 225 QAAAWGKELEPEALAWLLESGEPDLQRLASEIAKVATYVGDRRRIAAADLRAVGVALATA 284 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 + E+++A G+ A+ L L + P LL +++++L ++ Sbjct: 285 GVFELVDAVAAGRRRQAMDLLGRLLDANEPPLRLLALIARQYRILAYACSLRAEGG-DAA 343 Query: 277 KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ Q + ++ + R + L + Sbjct: 344 RLQQLLGLHPFVARKAW--QQARDVPLDRAMAALEAVLET 381 >gi|268318170|ref|YP_003291889.1| DNA polymerase III, delta subunit [Rhodothermus marinus DSM 4252] gi|262335704|gb|ACY49501.1| DNA polymerase III, delta subunit [Rhodothermus marinus DSM 4252] Length = 350 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 110/330 (33%), Gaps = 17/330 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + LI L ++ F+L ++ E + S + + Sbjct: 24 PLYFLYGEESFLIDTLQQLLIEHALPPELRAFNLDIVYGDETEARA--VLGLCQSLPVMA 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKFTSVL 138 +++++ N + ++ + I+++ + R + + Sbjct: 82 PHRVVIVRNFDSLRE-NRLFAAYAERPNPQAIVLLACSGRPNLNAQ-PYRALRQHAVWAE 139 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P + + + EA Q L +G D A EL+KL +Y Sbjct: 140 LRPLRP---AQVPGWLARYAEREGYRLEPEALQRLAEYVGTDLQAGVQELRKLFAYAGTR 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS----HALLHGF 254 +T + + T I E+ A +G+ +A+ + + L ++ Sbjct: 197 HTLTLDDIVTVSGQTRSYNIFELQRAVGEGRYSDAVYIVEQLLQHASNPRSEALRIVSFL 256 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 F L ++ + + +S + + + ++ + +S R + + +R L + Sbjct: 257 TTFFTKLWRL-TLCQGQRLSNQALAGRIGVPAYFLQEYL--QSARRYGGDAIRRVLAALL 313 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + ++ +L Q AC+ Sbjct: 314 AADVELKGGSQRDPRLVLHLLLRQVQAACR 343 >gi|90409056|ref|ZP_01217182.1| DNA polymerase III subunit delta [Psychromonas sp. CNPT3] gi|90309837|gb|EAS37996.1| DNA polymerase III subunit delta [Psychromonas sp. CNPT3] Length = 331 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 114/289 (39%), Gaps = 13/289 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G + E + Q K + + + +I +N S SLFS+K Sbjct: 20 ILIFGDEILFSLEALQQIKTSAKQQGYLEIFQFDMGVNFASDDI---FNHFVSRSLFSEK 76 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEK-FTSVLA 139 KIIL+ T K+ + E+ + ++II+ ++ + K EK V Sbjct: 77 KIILLTLPKTSKENTAFIREVTPLLNEDILLIIQGPKLNTQQMNSVWFKQLEKIGLFVAT 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++ N+ I + L Q S E + L + G+ + ++ E +KL+ Sbjct: 137 LAP---NQQRFPQWIFQRLKSLQLEASNEVIEYLCVHFEGNLLGAKQEFEKLAL-IYPKQ 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T Q V+ I I + +++ + G ++ + L + Q Sbjct: 193 KLTLQQVEKNITTHCHFSIFQWVDSLLVGAQGRSLRILKQLQNEDTEILLLSATLSSEIQ 252 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L KI K + ++ E+++++ + + K+ IL+++L + + + Sbjct: 253 KLLKISYQK--NTVALEQLLEQQQPKLWTAKKQILKKALTRLDTQRLEQ 299 >gi|161869650|ref|YP_001598817.1| DNA polymerase III subunit delta [Neisseria meningitidis 053442] gi|161595203|gb|ABX72863.1| DNA polymerase III, delta subunit [Neisseria meningitidis 053442] Length = 332 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIDLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSVQSVRNSLR 276 >gi|157160135|ref|YP_001457453.1| DNA polymerase III subunit delta [Escherichia coli HS] gi|312970721|ref|ZP_07784902.1| DNA polymerase III, delta subunit [Escherichia coli 1827-70] gi|157065815|gb|ABV05070.1| DNA polymerase III, delta subunit [Escherichia coli HS] gi|310337370|gb|EFQ02508.1| DNA polymerase III, delta subunit [Escherichia coli 1827-70] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|215485680|ref|YP_002328111.1| DNA polymerase III subunit delta [Escherichia coli O127:H6 str. E2348/69] gi|312965086|ref|ZP_07779323.1| DNA polymerase III, delta subunit [Escherichia coli 2362-75] gi|215263752|emb|CAS08088.1| DNA polymerase III, delta subunit [Escherichia coli O127:H6 str. E2348/69] gi|312290177|gb|EFR18060.1| DNA polymerase III, delta subunit [Escherichia coli 2362-75] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|157155534|ref|YP_001461808.1| DNA polymerase III subunit delta [Escherichia coli E24377A] gi|194439878|ref|ZP_03071941.1| DNA polymerase III, delta subunit [Escherichia coli 101-1] gi|253774374|ref|YP_003037205.1| DNA polymerase III subunit delta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160722|ref|YP_003043830.1| DNA polymerase III subunit delta [Escherichia coli B str. REL606] gi|297519943|ref|ZP_06938329.1| DNA polymerase III subunit delta [Escherichia coli OP50] gi|157077564|gb|ABV17272.1| DNA polymerase III, delta subunit [Escherichia coli E24377A] gi|194421172|gb|EDX37196.1| DNA polymerase III, delta subunit [Escherichia coli 101-1] gi|242376415|emb|CAQ31115.1| DNA polymerase III, delta subunit, subunit of DNA polymerase III, preinitiation complex and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253325418|gb|ACT30020.1| DNA polymerase III, delta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972623|gb|ACT38294.1| DNA polymerase III subunit delta [Escherichia coli B str. REL606] gi|253976817|gb|ACT42487.1| DNA polymerase III subunit delta [Escherichia coli BL21(DE3)] gi|323963209|gb|EGB58777.1| DNA polymerase III [Escherichia coli H489] gi|332341987|gb|AEE55321.1| DNA polymerase III, delta subunit, HolA [Escherichia coli UMNK88] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNGAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|163857638|ref|YP_001631936.1| DNA polymerase III subunit delta [Bordetella petrii DSM 12804] gi|163261366|emb|CAP43668.1| putative DNA polymerase III, delta subunit [Bordetella petrii] Length = 350 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 107/314 (34%), Gaps = 19/314 (6%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 +++ + + ++ G + L+ E I+ + + + +V++A Sbjct: 4 ALDADRLADHLQRAGQQLAPLYTVSGDEPLLVTEAIDALRAAARAAGYTDRTSMVMDA-- 61 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIII 116 + + S S SLF ++++ I+ + + ++ + + +I++ Sbjct: 62 -RSDWSAVAAATQSVSLFGDRRVLEIKLPTGKPGKTGGDTLTRLADQASRQPDPDTLILV 120 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLA 175 + K K A+ + P + L I L + Q + Sbjct: 121 ALPRLDKATRDAKWAQALAQAGIMVDLPTIERSRLPAWIGARLGRQNQRADNATLQWMAD 180 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 + G+ +A+ E+QKL + + + V+ + + + + +A + G + Sbjct: 181 KVEGNLLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDATRTVR 239 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + A +L ++ +LL ++ + ++++ I + Sbjct: 240 MLAGLRAEGEALPLVLWAVGEEIRLLARV-AEARAAGQDTGAVMRRLR--IFGAHERLAL 296 Query: 296 ESL-----RIWNKN 304 ++L R W Sbjct: 297 QALGRVSARAWPAA 310 >gi|163788222|ref|ZP_02182668.1| hypothetical protein FBALC1_07573 [Flavobacteriales bacterium ALC-1] gi|159876542|gb|EDP70600.1| hypothetical protein FBALC1_07573 [Flavobacteriales bacterium ALC-1] Length = 335 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 100/263 (38%), Gaps = 7/263 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + ++N+ F+ +VL + I + + + Sbjct: 18 PIYFLMGEEAYYIDKISDFIEENVLHEAEKGFNQMVLYGRDTS--IDDIVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLA 139 ++++++++ + ++ L + ++++ +I K L K K V+ Sbjct: 76 ERQVVIVKEAQDLSRTIEKLAKYAENPQPTTVLVVNYKYKKIDKRKALYKTISKNGGVV- 134 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + D I L IS +A Q+L+ LG D NEL KL + Sbjct: 135 FESKKLYDNQVPDWIRRVLKGQDYDISPKAAQMLVEFLGTDLGKVNNELNKLKIVLPKGT 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT +H+++ I + E+ A + + A +A +F + P + Sbjct: 195 QITPEHIEENIGISKDYNNFELRKAVGERNVIKAHKIAKYFADNPKDNPMVVTVSLLFSF 254 Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280 F L +H + + + S ++ Sbjct: 255 FSQLLHLHGMHDKNPRSVASALR 277 >gi|15800354|ref|NP_286366.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 EDL933] gi|15829932|ref|NP_308705.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str. Sakai] gi|168758285|ref|ZP_02783292.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4401] gi|168764681|ref|ZP_02789688.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4501] gi|168767088|ref|ZP_02792095.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4486] gi|168777617|ref|ZP_02802624.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4196] gi|168779133|ref|ZP_02804140.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4076] gi|168786491|ref|ZP_02811498.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC869] gi|168802448|ref|ZP_02827455.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC508] gi|195939380|ref|ZP_03084762.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str. EC4024] gi|208805866|ref|ZP_03248203.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4206] gi|208814912|ref|ZP_03256091.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4045] gi|208823081|ref|ZP_03263399.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4042] gi|209397273|ref|YP_002269276.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4115] gi|217326444|ref|ZP_03442528.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. TW14588] gi|254791806|ref|YP_003076643.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str. TW14359] gi|261224107|ref|ZP_05938388.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261257801|ref|ZP_05950334.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. FRIK966] gi|12513544|gb|AAG54974.1|AE005243_3 DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EDL933] gi|13360136|dbj|BAB34101.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str. Sakai] gi|187767196|gb|EDU31040.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4196] gi|189002798|gb|EDU71784.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4076] gi|189354840|gb|EDU73259.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4401] gi|189363511|gb|EDU81930.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4486] gi|189365366|gb|EDU83782.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4501] gi|189373766|gb|EDU92182.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC869] gi|189375578|gb|EDU93994.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC508] gi|208725667|gb|EDZ75268.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4206] gi|208731560|gb|EDZ80248.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4045] gi|208737274|gb|EDZ84958.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4042] gi|209158673|gb|ACI36106.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. EC4115] gi|209777068|gb|ACI86846.1| DNA polymerase III delta subunit [Escherichia coli] gi|209777070|gb|ACI86847.1| DNA polymerase III delta subunit [Escherichia coli] gi|209777072|gb|ACI86848.1| DNA polymerase III delta subunit [Escherichia coli] gi|209777076|gb|ACI86850.1| DNA polymerase III delta subunit [Escherichia coli] gi|217322665|gb|EEC31089.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. TW14588] gi|254591206|gb|ACT70567.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str. TW14359] gi|320638089|gb|EFX07853.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str. G5101] gi|320643495|gb|EFX12665.1| DNA polymerase III subunit delta [Escherichia coli O157:H- str. 493-89] gi|320648830|gb|EFX17457.1| DNA polymerase III subunit delta [Escherichia coli O157:H- str. H 2687] gi|320664894|gb|EFX32029.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str. LSU-61] gi|326345829|gb|EGD69568.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str. 1125] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|167825820|ref|ZP_02457291.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 9] Length = 352 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|77745305|gb|ABB02553.1| DNA polymerase III delta subunit [Lactobacillus reuteri] Length = 381 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 130/334 (38%), Gaps = 24/334 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 V++ G + L + I+ F I ++ + +++ + ++ +T F Sbjct: 18 VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++I L+ EK LD L++ + + I++ + ++ + K Sbjct: 74 ERRLVIINKPFFLTGEKTHSKVEHDLDSLKKYLEPPEPSTILVFAAPYEKLDGRKGIVKQ 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + + P ++ + L IS+ A L+ D L K Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + I + V ++ + + +++ A ++ A+ L LA + P + Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309 + +F+LL +I + ++ + + N+ P + + ++ R ++ + Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308 Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 L +I+ + ++ L + + +IL A+ Sbjct: 309 LGLIRIEQSLKTTQRDPSLCFSYLCYSILSRAKE 342 >gi|323976377|gb|EGB71467.1| DNA polymerase III [Escherichia coli TW10509] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAVFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|218703974|ref|YP_002411493.1| DNA polymerase III subunit delta [Escherichia coli UMN026] gi|293403902|ref|ZP_06647896.1| DNA polymerase III delta subunit [Escherichia coli FVEC1412] gi|298379678|ref|ZP_06989283.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302] gi|331662005|ref|ZP_08362928.1| DNA polymerase III, delta subunit [Escherichia coli TA143] gi|218431071|emb|CAR11947.1| DNA polymerase III, delta subunit [Escherichia coli UMN026] gi|291428488|gb|EFF01513.1| DNA polymerase III delta subunit [Escherichia coli FVEC1412] gi|298279376|gb|EFI20884.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302] gi|331060427|gb|EGI32391.1| DNA polymerase III, delta subunit [Escherichia coli TA143] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|171319958|ref|ZP_02909033.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MEX-5] gi|171094788|gb|EDT39827.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MEX-5] Length = 364 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307 >gi|153806312|ref|ZP_01958980.1| hypothetical protein BACCAC_00571 [Bacteroides caccae ATCC 43185] gi|149130989|gb|EDM22195.1| hypothetical protein BACCAC_00571 [Bacteroides caccae ATCC 43185] Length = 339 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 42/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLNDTEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + ++ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIATMLGLRTP--WQAKDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ K + +I+ + + I Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337 >gi|145296314|ref|YP_001139135.1| hypothetical protein cgR_2229 [Corynebacterium glutamicum R] gi|140846234|dbj|BAF55233.1| hypothetical protein [Corynebacterium glutamicum R] Length = 331 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76 V + G D+ L E NI D + L A EI + + + S Sbjct: 18 VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 70 Query: 77 TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLF++ +++++ N+ + + V L + + ++I++ S + + ++K+ EK Sbjct: 71 PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 129 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 V + D +++ + ++ + LL +G D + + +L Sbjct: 130 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 187 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + V+ + +I ++ G++ A+ L AL Sbjct: 188 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQVSKAVASTRRALQLGTSPVALAAAL 245 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311 K + +++ + I+ ++ ++ +++ + R W+ + V E + Sbjct: 246 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 301 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 +D + I + +A+ A + Sbjct: 302 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 331 >gi|254425063|ref|ZP_05038781.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7335] gi|196192552|gb|EDX87516.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7335] Length = 331 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 20/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F+G D+ + + + + F+ ++ I N+ + Sbjct: 2 PIYFFWGEDEFRLKQAVENLRDRTLAPAWATFNYDRISPDAADAAIQGL-NQAMTPPFGE 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++ + + + + L + + + ++++ S +K LRK A+ Sbjct: 61 GQRFVWLVDTPVAQRCSESTLAEMVRTLPLVPESTVLLLTSSSKPDGRLKSTKLLRKHAD 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + D L+ + + E+ +L +G D NEL+KLS Sbjct: 121 MREFLPIAPWQTDQ---LISQVRRVAQEMHLRLKPESAALLAEAVGADTRRLYNELEKLS 177 Query: 193 SYCLEDILITEQ----HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 Y + V + ++ + I G+ A+ LA LA+ P+ Sbjct: 178 VYWSSLGQVKTDPLPPEVITRLVAVSTQTSFQLAESLIAGQTDQALGLATDLLANNEPAL 237 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + +F+ + ++ + I K I + + P + ILQ+ +R + + Sbjct: 238 KVVATLVGQFRRWLWVSLLAQQGEIDV-KAIARAAEINNPRRVYILQKQVRGCAPSQFEK 296 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQT 334 L + ++ + I QT Sbjct: 297 ALSLLLGLEFSLKRGAP--EQITLQT 320 >gi|254246335|ref|ZP_04939656.1| DNA polymerase III, delta [Burkholderia cenocepacia PC184] gi|124871111|gb|EAY62827.1| DNA polymerase III, delta [Burkholderia cenocepacia PC184] Length = 364 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSMLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKMDPVDRAQLPNWIGQRLSMQGQRVASGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307 >gi|325290551|ref|YP_004266732.1| DNA polymerase III, delta subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965952|gb|ADY56731.1| DNA polymerase III, delta subunit [Syntrophobotulus glycolicus DSM 8271] Length = 344 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 40/307 (13%), Positives = 109/307 (35%), Gaps = 27/307 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG D+ + + + KK ++ ++ EI + +NS++LFS Sbjct: 18 VYLLYGEDRYSLLQSVQGMKKLFLREDPSGSNIEIMQGKEIPVD--QIIETLNSSALFS- 74 Query: 83 KKIILIENLSTEKKV-----------------LDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +K+++++N + ++ L + + + I+ I +N+ K Sbjct: 75 RKLVIVDNAPYFDQAKKKNSSEDEEMDQDSWSVEPLIDYLQDPNPSSILCIIANKANKGR 134 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 L + K ++ + P + I K+I +A L G Sbjct: 135 RLYQAMAKAGRIIEFA-MPSGTGEWQEWIGAEARANGKTIGMQAASYLAEWSGHHTGILG 193 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E++KL+ Y + I ++ + + + ++++ A+ + + Sbjct: 194 AEIEKLAVYLGDRQEIMKEDIGAVCIPMAETTVFKMLDGIAARNAGEALQRLREVVE-RE 252 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-IQKTEKNIIPMKRNILQESLRIWNKN 304 + +++ +LL ++ E + + + + ++S + Sbjct: 253 HYLKVNTMIVRQVRLLLTACYLRTGGGKPEELVRVASIKP---FEANKVFRQSAKF-TFP 308 Query: 305 LVRETLH 311 ++ + L Sbjct: 309 MLEKALE 315 >gi|164686309|ref|ZP_02210339.1| hypothetical protein CLOBAR_02747 [Clostridium bartlettii DSM 16795] gi|164601911|gb|EDQ95376.1| hypothetical protein CLOBAR_02747 [Clostridium bartlettii DSM 16795] Length = 348 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 120/289 (41%), Gaps = 23/289 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + LI I F+++++ + D F+L +++ E + + I + Sbjct: 17 KIYLLYGKEHYLIDNAIKLFRESLNESMID-FNLEIIDGKETTLD--QLLSSIETLPFMD 73 Query: 82 KKKIILIEN-----LSTEKKVLDCLEEIII---KNICNHIIIIKS--NEIKKNNTLRKIA 131 ++KI+++++ S +K D E+ +NI + I++ + E+ K ++ Sbjct: 74 ERKIVIVKDFELLTKSKKKNFSDKDEKTFASHLENIPDTTILVFAVYGEVDKRKSIVNTI 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------S 184 + +A +C + + L ++ I + + G D+ Sbjct: 134 --SKNGIAYNCEKISDMELFKWTKKKFEKNNTMIDNAQIMYFIESTGYKDKNNEYTLSDI 191 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 NE++K+SS+ D +T + + + I ++I+ NAI + + + Sbjct: 192 DNEIRKISSFAGSDTKVTNEIIDRLSQKKIENDIFKLIDYIGDKNSQNAIKILNDMINEG 251 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + ++F+++ ++ + ++ + I K + ++ + ++I Sbjct: 252 ESVLGIFAMINRQFKIVLQVKELL-NKGLNNKAISDKLKLSLFIVNKSI 299 >gi|193069092|ref|ZP_03050050.1| DNA polymerase III, delta subunit [Escherichia coli E110019] gi|218694080|ref|YP_002401747.1| DNA polymerase III subunit delta [Escherichia coli 55989] gi|192957636|gb|EDV88081.1| DNA polymerase III, delta subunit [Escherichia coli E110019] gi|218350812|emb|CAU96504.1| DNA polymerase III, delta subunit [Escherichia coli 55989] Length = 343 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|157369448|ref|YP_001477437.1| DNA polymerase III subunit delta [Serratia proteamaculans 568] gi|157321212|gb|ABV40309.1| DNA polymerase III, delta subunit [Serratia proteamaculans 568] Length = 344 Score = 80.0 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 111/302 (36%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + ++ + L+A + ++ + SLF+ + Sbjct: 21 YLLSGNEPLLLQESQDLIRQTAQQHQFTEHYSISLDAHT---DWDAIFSICQAMSLFASR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + +++ + + L ++ + +++++ + K + + Sbjct: 78 QTLLLIFPENGPTAPIGEQLIKLAALLHDDILLMLRGPRLTKAQENSAWFKALSPHGAYV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC + L + + + + A Q+L G+ +A L++LS D Sbjct: 138 SCQTPEQAQLPRWVAQRAKTMKLELDDAANQLLCYCYEGNLLALSQALERLSL-LHPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A + + LL ++ Sbjct: 197 LTLPRVELAVNDAAHFTPFHWLDALLAGKSKRAWHILQQMQQEDVEPVILLRTLQRELLQ 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + +++ + + + + +RN++ ++L+ + +R+ +H + Sbjct: 257 LLNLQRRM--ASVPLRTLFDQYK--VWQNRRNLVTQALQRLSGAQLRQAVHLLTQIEITL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|19553545|ref|NP_601547.1| hypothetical protein NCgl2264 [Corynebacterium glutamicum ATCC 13032] gi|62391189|ref|YP_226591.1| hypothetical protein cg2576 [Corynebacterium glutamicum ATCC 13032] gi|41326529|emb|CAF21011.1| putative DNA polymerase III delta subunit [Corynebacterium glutamicum ATCC 13032] Length = 331 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76 V + G D+ L E NI D + L A EI + + + S Sbjct: 18 VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 70 Query: 77 TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLF++ +++++ N+ + + V L + + ++I++ S + + ++K+ EK Sbjct: 71 PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 129 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 V + D +++ + ++ + LL +G D + + +L Sbjct: 130 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 187 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + V+ + +I ++ G++ A+ L AL Sbjct: 188 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQMSKAVASTRRALQLGTSPVALAAAL 245 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311 K + +++ + I+ ++ ++ +++ + R W+ + V E + Sbjct: 246 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 301 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 +D + I + +A+ A + Sbjct: 302 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 331 >gi|258511974|ref|YP_003185408.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478700|gb|ACV59019.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 336 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 26/335 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YGS+ GL ++ +N ++ S++ + E + E+ S SL Sbjct: 18 VYLLYGSEIGLFDWFCDELIRNHQVS-----SMLRFDYQEDGFEPAEM--ELCSYSLLGD 70 Query: 83 KKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + ++ + N D L + + + +++ K + R++ + Sbjct: 71 RPLVYVRNATAFTPEGRSGPDADRLAAYLEQPVSGRTLVLSVPSDKLDER-RRVTKLAKR 129 Query: 137 VLAISCYPDNKIHLMDLIE-ESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I+C P ++ E L + I K+A L +A NE KL +Y Sbjct: 130 HAVIAC-PVPSRDRDAMVRLERLARSKAVVIDKDALAELWRRTQSLTLAM-NEFDKLRAY 187 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT HV +++ + I+ +QG++ + D + +L+ Sbjct: 188 AGG-GPITRDHVLELVPMQAEDSVFTWIDWAVQGQVASVFEALDGLARQGYDAFSLIALL 246 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ +L+ + E + P + + + + + Sbjct: 247 ARQVRLMAFAKGAANLEQRAKEL-------GVHPYALRTAARQSARFPERKLARLVRVLA 299 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349 ++ + + + ++ +A A Sbjct: 300 DAEWDVKRGRLAPEVALNLVLMELAHAASTTPRNR 334 >gi|13508189|ref|NP_110138.1| hypothetical protein MPN450 [Mycoplasma pneumoniae M129] gi|2496381|sp|Q50362|Y450_MYCPN RecName: Full=Uncharacterized protein MG315 homolog gi|639787|gb|AAA61694.1| unknown [Mycoplasma pneumoniae] gi|1674072|gb|AAB96039.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 314 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 131/322 (40%), Gaps = 29/322 (9%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S + + YG+D GLI + +NQ +P + + ++++ ++ + + +L Sbjct: 13 SFTMTVVYGADIGLIHQQLNQLL--------NPAACKQVWF----QDVNKLYDVVLNQNL 60 Query: 80 FS-KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+ K ILI N S EK L E +K + + +++ I ++ + ++ Sbjct: 61 FAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVT---IYSDSPANALI-NDRAI 116 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 +C P + +I ++ + +++ + L L + EL+KL+ Sbjct: 117 TKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLS-P 175 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALLHGFL 255 L ++ ++ ++CD I ++ +A ++ + A+ L + K P L FL Sbjct: 176 AELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQFL--EFL 233 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 LL + + + + + + N+ P + +Q R W+ N + ++ I Sbjct: 234 ANELLLALM-----VKGVKP-QAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTALINAIWQ 287 Query: 316 RIHLARKKKYLEKNIIFQTILY 337 ++ L +++ +L Sbjct: 288 LDIKIKRNDGLAIHLLKHFVLR 309 >gi|78043172|ref|YP_359266.1| hypothetical protein CHY_0405 [Carboxydothermus hydrogenoformans Z-2901] gi|77995287|gb|ABB14186.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 327 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 108/301 (35%), Gaps = 20/301 (6%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I +F T+ + +++F G ++ E + K + H F+ L+ E+ Sbjct: 2 IAYERFKNALTRGVL--KPLYLFSGEER-YFKERLFGEIKKYLGSNH-EFNYEELDGHEV 57 Query: 64 QKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + S F + + I+++N + K + L + ++I S E+ Sbjct: 58 L--PEEVVARAETVSFFGQ-RFIVVKNCRFFSGKHDEEPLLNYLKNPAPRA-VVIFSTEL 113 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 + + E + I ++ + +LI+ ++ +EA +L + G + Sbjct: 114 PVDKKKKIYQEFLKNGEEIEFSRLDEKEVQELIKTWADRAGFNLEREALIVLAQSYGQNL 173 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + E +KL Y L + +IT + V ++ + + ++ + GKI L + Sbjct: 174 VELEKEFKKLVLYKLSEKIITLKDVLEVSGQDQEISVFYLVEELLSGKINR-PKLKERLT 232 Query: 242 ASKMPSHALLHGF--LQKF-------QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + L++ Q + + I + + I + + + + Sbjct: 233 NQEEAVKFTGLVAKNLRQIYTVKVLQQKGKTLQEIAKITGIPEWLVKKTLRSAVHLSQEK 292 Query: 293 I 293 + Sbjct: 293 L 293 >gi|167721225|ref|ZP_02404461.1| DNA polymerase III subunit delta [Burkholderia pseudomallei DM98] Length = 326 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|293400478|ref|ZP_06644623.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305504|gb|EFE46748.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 317 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 116/316 (36%), Gaps = 31/316 (9%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG ++ + + + K D + V +A +Q ++ T + + FS Sbjct: 3 YVLYGEEQFRLKKTLQTIIKEYIAD-GDELNTVQYDA--LQCDLETILEDAMTIPFFSAY 59 Query: 84 KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNE---IKKNNTLRKIAEKFT 135 KIIL+ + + + + E +K ++I + + + K+ +K Sbjct: 60 KIILVYHANFLSTANDTGIDPNGLENYVKQPMESTVLILIGDFAKLDTRKKIIKLIQKNW 119 Query: 136 SVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 VL L DL ++E + Q + +A Q LL L D + K Sbjct: 120 KVL-------EFRKLDDLGKQSCVKEEIQRRQLHVDAQAMQELLKRLPLDMETIHSAFDK 172 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y + IT+ V ++ + E++NA ++ + A + + L Sbjct: 173 LQLYGGD---ITQDVVAHLVARPLEEDVFELVNAVVEQDVRKAFRIWCDLCVVNTDAIYL 229 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+ L ++ + S + I + P + + +S++ + + + L Sbjct: 230 IALLASQFRFLFEVKTLM-MQGESKDGIKDIL--HAHPYRIKLAMQSVQNLSASYLMSML 286 Query: 311 HKIDHRIHLARKKKYL 326 K+ + K L Sbjct: 287 AKL--ATLDQKLKGGL 300 >gi|170767849|ref|ZP_02902302.1| DNA polymerase III, delta subunit [Escherichia albertii TW07627] gi|170123337|gb|EDS92268.1| DNA polymerase III, delta subunit [Escherichia albertii TW07627] Length = 343 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 97/270 (35%), Gaps = 20/270 (7%) Query: 62 EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 56 DPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV--- 112 Query: 120 EIKKNNTLRKIAEKFT-------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 + N L K E + ++C + L + + A Q+ Sbjct: 113 ---RGNKLSKTQENAAWFTALVNRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQV 169 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 170 LCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKR 228 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ + LL ++ LL + ++ ++ + K + +R Sbjct: 229 ALHIIQQLRLEGSEPIILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRG 284 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322 ++ E+L ++ +R+ + + ++ Sbjct: 285 MIGEALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|37525268|ref|NP_928612.1| DNA polymerase III subunit delta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784695|emb|CAE13595.1| DNA-directed DNA polymerase III delta chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 346 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 116/311 (37%), Gaps = 23/311 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G++ L+ E + +K L+ I +N S SLF Sbjct: 18 RNCYLIWGNEPLLLQESQDHIRKAAEKNAFTEHFTYTLDNHTEWDEI---FNICQSLSLF 74 Query: 81 SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF---- 134 + ++ + L+ + + L ++ + ++I+ + L K E Sbjct: 75 ASRQTLTLLLPENGPNTTIAEQLVKLAELLHPDILLIL------RGLKLTKAQENSHWFK 128 Query: 135 ---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + +SC + L + + + + ++A Q+L G+ +A L++L Sbjct: 129 ILGKNGVYVSCQTPEQNRLPQWVAQRAKAMKLVLEEQANQLLCYCYEGNLLALAQALERL 188 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S D +T V++ + D +++ + GK A + + LL Sbjct: 189 SL-LYPDGKLTLHRVENAVNDAAHFTPYHWVDSLLSGKAKRAWHILKQLKQEDCEAVILL 247 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ + + ++ + + +R++L +L+ ++ ++ +H Sbjct: 248 RTVQRELLLLLTLK--RQSTTTPMKTLLDQHR--VWQNRRSLLTSALQRLTQHDLQRAIH 303 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 304 LLVQMERQIKQ 314 >gi|167847304|ref|ZP_02472812.1| DNA polymerase III subunit delta [Burkholderia pseudomallei B7210] Length = 334 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|254804591|ref|YP_003082812.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis alpha14] gi|254668133|emb|CBA04737.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis alpha14] gi|325144089|gb|EGC66397.1| DNA polymerase III, delta subunit [Neisseria meningitidis M01-240013] Length = 332 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSVQSVRNSLR 276 >gi|207856112|ref|YP_002242763.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707915|emb|CAR32203.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 343 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 94/260 (36%), Gaps = 8/260 (3%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + ++I++ N++ K Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + +SC + L + + A Q+L G+ + Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDATHFTPFHWVDALLMGKSKRALHILQQLRL 238 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 LL ++ LL + ++ ++ + K + +R ++ ++L + Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALLRLH 294 Query: 303 KNLVRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314 >gi|254673636|emb|CBA09188.1| DNA polymerase III, delta subunit [Neisseria meningitidis alpha275] Length = 332 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLQEEGEEPVLLLWAVSEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|325202497|gb|ADY97951.1| DNA polymerase III, delta subunit [Neisseria meningitidis M01-240149] gi|325207752|gb|ADZ03204.1| DNA polymerase III, delta subunit [Neisseria meningitidis NZ-05/33] Length = 332 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEINKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|254519890|ref|ZP_05131946.1| DNA polymerase III subunit delta [Clostridium sp. 7_2_43FAA] gi|226913639|gb|EEH98840.1| DNA polymerase III subunit delta [Clostridium sp. 7_2_43FAA] Length = 343 Score = 80.0 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 117/329 (35%), Gaps = 26/329 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D+ LI E IN N + + L+ L + N + K Sbjct: 20 YIFCGLDEELIKEGINLIVNNTVDKSLLDLNYIRLDGLTTNFDE--IMNACETMPFMGDK 77 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIKNICNHIIII-----KSNEIKKNNTLRKI 130 K++++ + K+ + + + + ++I+ + K N K Sbjct: 78 KVVVVYRAAFLKDKTDSANTKIYNEVLKYLKDLPPYTVLIMYYLFNDKRDTPKKNNKIKS 137 Query: 131 AEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 +K + V+ Y D +EE K I K + + + + E Sbjct: 138 LDKVSKVV----YFDRLKKDRYYKKVEEVFKANGKEIGKIEARYFAEKVQNNFDIIKREA 193 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 K+ SY IT++ + +I ++ I ++I+ Q K AI L D L Sbjct: 194 DKIISYTNG-KQITKRDIDKLIANSSEDDIFDLIDLISQRKAEKAIDLLDELLFKSDQHM 252 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ F+ L +I I+ + + ++ + K + ++ L + ++ Sbjct: 253 LIISNIENNFKRLYEIKILSQ-NGLNTNDLASKYKLPTFICEK--LVNQCNKFTVKQLQR 309 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILY 337 + + K ++K + + +L+ Sbjct: 310 LMEICLETENKL-KTSGIDKTMEMELMLF 337 >gi|332521845|ref|ZP_08398294.1| DNA polymerase III, delta subunit [Lacinutrix algicola 5H-3-7-4] gi|332042517|gb|EGI78719.1| DNA polymerase III, delta subunit [Lacinutrix algicola 5H-3-7-4] Length = 334 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 102/263 (38%), Gaps = 8/263 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I ++ + N+ F+ +VL ++ + + + Sbjct: 18 PIYLLMGEEAYYIDKISEFIESNVLAEEERGFNQMVLYGRDVT--VEDIVGNAKRFPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 K++++++ + +D L + + ++++ K + K + K +K V Sbjct: 76 DKQVVVVKEAQDLSRTIDKLSDYAKNPQPSTVLVLCYKYKSVDKRKAVYKAIKKSGIVFE 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 DN+ + D I +L I+ +A Q+L+ LG + NEL+KL E Sbjct: 136 SKKLYDNQ--VPDWIRRTLSTKGYKITPKASQMLVEFLGTNLAKINNELEKLQIVLPEGS 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQK- 257 IT H+++ I + E+ A A + +F + K + L Sbjct: 194 EITPSHIEENIGISKDYNNFELRKAIGARNDAKAFKIITYFGDNPKDNPMVVTVSLLYNF 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280 F L ++H + + S S ++ Sbjct: 254 FSQLLQLHGMNDKSPRSVASALR 276 >gi|298208818|ref|YP_003716997.1| hypothetical protein CA2559_11278 [Croceibacter atlanticus HTCC2559] gi|83848745|gb|EAP86614.1| hypothetical protein CA2559_11278 [Croceibacter atlanticus HTCC2559] Length = 336 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 42/337 (12%), Positives = 119/337 (35%), Gaps = 42/337 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG + I ++ + + N+ F+ + L ++ + + + + Sbjct: 20 PFYFLYGEEAFFIDQISDYIEDNVLTEEERGFNQMTLYGRDVS--VEDIVSNAKRYPMMA 77 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII------------KSNEIKKNNTL-- 127 ++++I+++ + ++ L ++++ + K L Sbjct: 78 ERQVIIVKEAQDLSRTIEKLVSYAENPQPTTLLVVCYKYKKLDKRKKLYKALNKEGVLFE 137 Query: 128 -RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K+ + + I +L I+++A +L LG D N Sbjct: 138 GKKLYDNQ---------------ISPWIIRTLKSQGYGITQKASHMLAEFLGSDLGKVSN 182 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL KL + I IT +H+++ I + E+ NA + A + ++F + Sbjct: 183 ELNKLKLILPKGIEITPEHIEENIGISKDFNNFELQNAIGEKNKLKAHRIINYFSQNPKD 242 Query: 247 SHALLHGFL--QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + +L L F L ++H + ++ S + + ++ + + R ++ Sbjct: 243 NPIVLTSALLFSFFSKLLQVHSLSNINDKSVATALGIS--PYF--SKDYITAA-RNYSMR 297 Query: 305 LVRETLHKIDHRIHLAR---KKKYLEKNIIFQTILYI 338 + + + ++ +++ + ++ I Sbjct: 298 DASQAISLLRVMDLKSKGVDSNAIPSGDLLKEFLVKI 334 >gi|110804711|ref|YP_688231.1| DNA polymerase III subunit delta [Shigella flexneri 5 str. 8401] gi|110614259|gb|ABF02926.1| DNA polymerase III, delta subunit [Shigella flexneri 5 str. 8401] Length = 343 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 112 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 113 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRTKQLNLELDDAAN 167 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 283 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|157146742|ref|YP_001454061.1| DNA polymerase III subunit delta [Citrobacter koseri ATCC BAA-895] gi|157083947|gb|ABV13625.1| hypothetical protein CKO_02516 [Citrobacter koseri ATCC BAA-895] Length = 343 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 98/264 (37%), Gaps = 8/264 (3%) Query: 62 EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + + T +++ + SLF+ ++ ++L+ + + L + + ++I++ N Sbjct: 56 DTSTDWGTLFSQCQAMSLFASRQTLLLLLPENGPNAAINEQLATLSGLLHDDLLLIVRGN 115 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ K + + +SC + L + + A Q+L Sbjct: 116 KLTKAQENAAWYTSLAGTGVQVSCQTPEQAQLPRWVAARAKQNNLQLDDAANQLLCYCYE 175 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 176 GNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLMGKSKRALHILQ 234 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 LL ++ +L + ++ ++ + K + +R ++ ++L Sbjct: 235 QLRLEGSEPVILLRTLQRELLMLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMIGDAL 290 Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322 + +R+ + + ++ Sbjct: 291 NRLQQTQLRQAVQLLTRTEITLKQ 314 >gi|139439598|ref|ZP_01773011.1| Hypothetical protein COLAER_02038 [Collinsella aerofaciens ATCC 25986] gi|133774939|gb|EBA38759.1| Hypothetical protein COLAER_02038 [Collinsella aerofaciens ATCC 25986] Length = 334 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 96/243 (39%), Gaps = 7/243 (2%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA E + S + ++ G+D +++ K + + F+ L+ Sbjct: 1 MARSEYEGLREGSAMSETGLLPAYLIVGTDGVKRDHAVSRMKARLEKSGMVEFN---LDE 57 Query: 61 LEIQKNIST--FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK 117 ++ K+ +N+ + S+ ++++++ S K V + L E + + +I Sbjct: 58 RDMTKDPDIESIIGSLNTFPMGSEFRLVILDGCSKLAKAVSEPLVEYLASPSPTTVCLII 117 Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 ++ + KN L K K I C + L +++ KSIS A + L++ Sbjct: 118 ADSLAKNTRLYKAIAKIDKKAVIDCSGTKRWELPRRVQQMATQHGKSISTAAAEELVSRS 177 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + N+L KL+ +E I V+ I T + + +NA + ++ L Sbjct: 178 GENTRMLDNDLAKLAQ-MVEAPQIELADVERWIVRTAEVQPWDFLNAVSARDMRRSLELF 236 Query: 238 DFF 240 + Sbjct: 237 NLL 239 >gi|261377883|ref|ZP_05982456.1| DNA polymerase III, delta subunit [Neisseria cinerea ATCC 14685] gi|269145736|gb|EEZ72154.1| DNA polymerase III, delta subunit [Neisseria cinerea ATCC 14685] Length = 332 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + + LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLHSAGGAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L+ + + + ++ +++KN K Sbjct: 73 DLKLLELHIPNGKPGKTGGETLQTFASRLPEDTVTVVLLPKLEKNQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLGKIGLFIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAIAEDI 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAASL-KQGQSVQSVRNSLR 276 >gi|190575350|ref|YP_001973195.1| DNA polymerase III subunit delta [Stenotrophomonas maltophilia K279a] gi|190013272|emb|CAQ46906.1| putative DNA polymerase III [Stenotrophomonas maltophilia K279a] Length = 345 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 101/283 (35%), Gaps = 12/283 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + + E + + + + + + + N+ SLFS Sbjct: 19 PVYLIAGPETLRVLEAADAIRARARAAGIAEREVFDADGRDF--DWNQLDASFNAPSLFS 76 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++++ + + K + + + + +++I ++E K + K AE + Sbjct: 77 ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITASEWSKAHQ-GKWAEAVNRIGV 135 Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +S + L D IE L A Q L + G+ +A+ E+ KL+ Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ++ ++ D + ++ AT G+ + + AL+ +++ Sbjct: 196 P-LDVERMESLVADAARYDVFRLLEATFSGQPPAVLRMLAGLRGEGEAVAALMPMVIREL 254 Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + N++ E + I ++ + +L+ Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293 >gi|333007449|gb|EGK26929.1| DNA polymerase III, delta subunit [Shigella flexneri VA-6] Length = 340 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAAN 164 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 224 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNR 279 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 280 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 311 >gi|224539979|ref|ZP_03680518.1| hypothetical protein BACCELL_04891 [Bacteroides cellulosilyticus DSM 14838] gi|224518405|gb|EEF87510.1| hypothetical protein BACCELL_04891 [Bacteroides cellulosilyticus DSM 14838] Length = 339 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + NI F+L V+ ++ +I+T N + Sbjct: 21 RPVYYLMGEEPYYIDLIADYITDNILTETEKEFNLTVVYGADV--DIATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 L I + + +A +L +G D EL+KL L Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGIDVEPKATAMLADFVGADLSRLTGELEKLII-TLPK 194 Query: 199 I--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ + A + +F + K + L Sbjct: 195 GYTRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLL 254 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F + + + ++ L ++R +N + + +I + Sbjct: 255 FGFFSNLMLAYYAPEKSEQGIANMLGLRTP--WQAKDYLA-AMRRYNGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNPSLSDGDILRELVFKI 337 >gi|166365270|ref|YP_001657543.1| DNA polymerase III subunit delta [Microcystis aeruginosa NIES-843] gi|166087643|dbj|BAG02351.1| DNA polymerase III delta subunit [Microcystis aeruginosa NIES-843] Length = 327 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 120/313 (38%), Gaps = 25/313 (7%) Query: 25 IFY-GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL---F 80 IFY G D+ I NQ KN+ + DP + + N +I + + E + ++ F Sbjct: 4 IFYWGEDEFAI----NQAVKNLQVKLLDP-NWIQFNYDKINGDRNEAIIEALNQAMTPVF 58 Query: 81 S-KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEK 133 +++ + + + + L+ + N +++ S + K ++ L+ K + Sbjct: 59 GMGNRLVWLADTVICQQCSEDIFKELQRTLPNLPENSYLLLTSAK-KPDSRLKSSKFIQN 117 Query: 134 FTSV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 V I + + + + E ++ +A ++L +G + EL+K Sbjct: 118 QAEVKEFELIPPWKVEE--IAQRVREIAKEVGVKLTPDAIELLAEAVGNNSRLLWMELEK 175 Query: 191 LSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 L + I ++ + ++ + ++ +A ++ + A+ L + L A Sbjct: 176 LRLFKNNSAGTIDKKDILSLV-NASNQSSLQLASAILKRETGKALELVNELLNRNENPLA 234 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + +F+ + + E EK I + P + +++ ++ ++ + T Sbjct: 235 ITATLGGQFRTWAIVKLKIEEGEKD-EKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLAT 293 Query: 310 LHKIDHRIHLARK 322 L + + ++ Sbjct: 294 LPILLELEYRLKR 306 >gi|313649715|gb|EFS14139.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 2457T] gi|332763360|gb|EGJ93600.1| DNA polymerase III, delta subunit [Shigella flexneri K-671] Length = 340 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAAN 164 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 224 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 279 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 280 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 311 >gi|293606891|ref|ZP_06689239.1| DNA-directed DNA polymerase III delta subunit [Achromobacter piechaudii ATCC 43553] gi|292814743|gb|EFF73876.1| DNA-directed DNA polymerase III delta subunit [Achromobacter piechaudii ATCC 43553] Length = 351 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 105/300 (35%), Gaps = 17/300 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +Q+ L ++ G + L+ E ++ + + + +V++A + + Sbjct: 12 EHLQRPGNRLA---PLYTVSGDEPLLVTEAVDTLRASARNAGYTDRLSMVMDA---RSDW 65 Query: 68 STFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEI 121 S S SLF ++I I I K D L ++ + + +I+I + Sbjct: 66 SAVTAATQSVSLFGDRRILEIKIPTGKPGKSGADTLTKLAEQAEKQPDADTLILIALPRL 125 Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K + + + + + L + L + Q + + G+ Sbjct: 126 DKATRESRWVQALARGGVMVDIANIERGRLPAWVGMRLARQNQRADAATLQWMADKVEGN 185 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +A+ E+QKL + + + V+ + + + + +A + G I I + D Sbjct: 186 LLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDIARTIRMIDGL 244 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A +L ++ +LL +I ++++ I + ++L Sbjct: 245 RAEGEALPLVLWAVGEEIRLLARI-AEARALGQDANGLMRRLR--IFGAHERLALQALNR 301 >gi|74311176|ref|YP_309595.1| DNA polymerase III subunit delta [Shigella sonnei Ss046] gi|73854653|gb|AAZ87360.1| DNA polymerase III delta subunit [Shigella sonnei Ss046] Length = 343 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVTARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|320157155|ref|YP_004189534.1| DNA polymerase III subunit delta [Vibrio vulnificus MO6-24/O] gi|319932467|gb|ADV87331.1| DNA polymerase III delta subunit [Vibrio vulnificus MO6-24/O] Length = 341 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 118/304 (38%), Gaps = 13/304 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ LI E + +K F A++ + + ++ + SLFS Sbjct: 18 PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I +E + + L + + +++I +++ K K + Sbjct: 75 SRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC + L + + ++A Q+L G+ A L+KL+ D Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + +++ + + + I+A ++GK + A + + LL ++ Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317 LL ++ + +++ +Q EK+ I K+ + +L +R+ L + Sbjct: 254 LLLLQMQQQLQQNSM-----MQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308 Query: 318 HLAR 321 LA+ Sbjct: 309 ILAK 312 >gi|167904279|ref|ZP_02491484.1| DNA polymerase III subunit delta [Burkholderia pseudomallei NCTC 13177] Length = 344 Score = 79.6 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 107/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSMLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|167895891|ref|ZP_02483293.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 7894] Length = 325 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|298492086|ref|YP_003722263.1| DNA polymerase III subunit delta ['Nostoc azollae' 0708] gi|298234004|gb|ADI65140.1| DNA polymerase III, delta subunit ['Nostoc azollae' 0708] Length = 328 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 110/294 (37%), Gaps = 16/294 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++++G D I + + + I F+ + I N+ + + + Sbjct: 2 PIYVYWGEDDFAIEKAVVVLRDRILDPLWTSFNYTAFPPDQADAVIQAL-NQAMTPAFGA 60 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132 ++ + N + + VL L+ + + +++ S +K L++ A+ Sbjct: 61 GGRLAWLVNSTLCQQCPENVLSELQRTLPVIPEDSYLLLTSRNKPNERLKATKFLKQFAQ 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 L + + L+ + ++ ++ ++L ++G D NE++KL Sbjct: 121 FREFPL-VPPWKTEL--LVQAVNQAAQTVGVKLTAPTAELLAESIGNDTRLLYNEMEKLR 177 Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + + V ++ +T ++ + A G A+ + + + P ++ Sbjct: 178 LYIRGSNEPLDVKIVTQLVKNTTQNTLQ-LAAAIRTGDTAKALGILRNLINAAEPGLRIV 236 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + +F+ + I+ E + + I Q E + P + LQ+ ++ + Sbjct: 237 ATLIGQFRTWLWVKIMMEAGECNPQAITQGAEVS-NPKRIYFLQQEVKSLSVQQ 289 >gi|183598112|ref|ZP_02959605.1| hypothetical protein PROSTU_01476 [Providencia stuartii ATCC 25827] gi|188020270|gb|EDU58310.1| hypothetical protein PROSTU_01476 [Providencia stuartii ATCC 25827] Length = 344 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 115/302 (38%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +G++ LI E + +K F +LE + ++ + SLF+ + Sbjct: 21 YLIWGNEPLLIQESQDAIRKTAQTQG---FEEHFTFSLEQHTDWDEIFSLCQALSLFTSR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + +++ + + L ++ + +++++ ++ K + + I Sbjct: 78 QSLTLILPENGPSAAMAEKLIQLSQLLHPDILLLLRGQKLTKAQENSAWFKAISHEAVYI 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC L + + Q S+ EA Q+L G+ +A L++LS D Sbjct: 138 SCLTPEYQRLPQWVAKRAHNMQLSLETEANQLLCYCYEGNLLALAQALERLSL-LYPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V+ + D ++A + GK A + + + LL ++ L Sbjct: 197 LTLPRVETAVNDAAHFTPYHWVDALLAGKSRRAWHILEQLQREDTETVILLRAIQRELML 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + ++ + + + + I +R +L +L+ + + ++ L + A Sbjct: 257 LLTLK--RQSVTTPLKTLFDQHK--IWQSRRPLLSAALQRLSLHQLQSALLLLTQAELHA 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|51244740|ref|YP_064624.1| hypothetical protein DP0888 [Desulfotalea psychrophila LSv54] gi|50875777|emb|CAG35617.1| hypothetical protein DP0888 [Desulfotalea psychrophila LSv54] Length = 452 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 77/184 (41%), Gaps = 12/184 (6%) Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC----------YPDNKIHLMDLIEESL 158 +I+I+ + + K +K I C D + + + ++L Sbjct: 192 PAGNILILTAETVDKRQRFFSYCKKS--ATTIDCSVASGSNSAAQKDQLAVVQEQLNKTL 249 Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + QK ++ +A ++ + +G +A NE +KL+ Y + I+ V+++ T + Sbjct: 250 GLFQKKMAADAVRLFIDRVGCHPVAVINEAEKLALYAGDRPKISIDDVRELTSQTREDAL 309 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 E A G+ ++++ L++ + S A+L ++ L I ++ + ++++ Sbjct: 310 FEFTEALSSGQAAKSLIILKRILSNNIHSLAVLATLRNFYRRLLLIRGVQLKHRVPWQQM 369 Query: 279 IQKT 282 + Sbjct: 370 PAQQ 373 >gi|332094312|gb|EGI99363.1| DNA polymerase III, delta subunit [Shigella boydii 5216-82] Length = 343 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS L+ +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSLLWLD-GKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|222151484|ref|YP_002560640.1| hypothetical protein MCCL_1237 [Macrococcus caseolyticus JCSC5402] gi|222120609|dbj|BAH17944.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 275 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 104/280 (37%), Gaps = 16/280 (5%) Query: 70 FWNEINSTSLFSKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIK--S 118 + + S K ++I N +T + +D + I + +I S Sbjct: 1 MLEDAMTFPFLSDAKAVVINNAFVFTGEKVKTTFEIDIDEILAFIEGFEGPNYVIFTVYS 60 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 +++ + L K + V I ++ + +I+ L K I ++A ++ G Sbjct: 61 DKLDERKKLVKRIKANHEVKKIEPL--DEQEIKKIIKSILNENFKDIKEDALNEMIHLTG 118 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D A EL KL Y + +IT+ V ++ + + + + GK AI L Sbjct: 119 IDYGAVMKELDKLVLYSGDAPIITKSDVTQVVSRSLEQNVFLLTDYITSGKKAEAIQLLK 178 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + K LL +++L ++ I+ E S ++I ++ + + P + + + Sbjct: 179 DLIHMKEEPIKLLALITSQYRLYYQVKILSE-KGFSEQQIAREVK--VHPYRVKLSMRKV 235 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 R + + + + + + I+ IL I Sbjct: 236 RQIPLKHLLDVIDACAEADYELKSSYMDKVLILELFILKI 275 >gi|315292108|gb|EFU51460.1| DNA polymerase III, delta subunit [Escherichia coli MS 153-1] gi|324006320|gb|EGB75539.1| DNA polymerase III, delta subunit [Escherichia coli MS 57-2] Length = 325 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 36 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 96 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 270 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 271 ALNRLSQSQLRQAVQLLTRTELTLKQ 296 >gi|323704214|ref|ZP_08115793.1| DNA polymerase III, delta subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323536280|gb|EGB26052.1| DNA polymerase III, delta subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 330 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 108/251 (43%), Gaps = 12/251 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++FYG ++ LI E I + K + + + ++ N + + + S Sbjct: 18 PAYVFYGEERFLIDEAIKKLKSKLIAEGTEIMNYSMIE----DANDKNIIDSLETLPFMS 73 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + + +LI++ KK+ D + IIK N + I + ++I + K K + Sbjct: 74 EHRFVLIKDDDVLKKINDDTVDAIIKRIEGGNTDSCIAFVFKDKIDTRKRIFKAISKHGA 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 ++ ++ ++ + + I K I K + ++ ++G D NE++K+ SY Sbjct: 134 IVNFEHLKFDEA--VNYVGFFVRIYGKVIKKPVAEYIVKSVGVDLYTLLNEIKKIVSYS- 190 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + VKD+I + + +++NA + AI + + + ++ +L + Sbjct: 191 DGQEVLIDDVKDVISASTAESVFKLVNAIGLRQEKVAIYILNKMILNEENPIGILAMIAR 250 Query: 257 KFQLLEKIHII 267 +F++L K + Sbjct: 251 QFRILIKAKYL 261 >gi|301329163|ref|ZP_07222160.1| DNA polymerase III, delta subunit [Escherichia coli MS 78-1] gi|300844510|gb|EFK72270.1| DNA polymerase III, delta subunit [Escherichia coli MS 78-1] Length = 328 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 39 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 97 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 98 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 152 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 153 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 211 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 212 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 267 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 268 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 299 >gi|24112060|ref|NP_706570.1| DNA polymerase III subunit delta [Shigella flexneri 2a str. 301] gi|30062171|ref|NP_836342.1| DNA polymerase III subunit delta [Shigella flexneri 2a str. 2457T] gi|24050886|gb|AAN42277.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 301] gi|30040416|gb|AAP16148.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 2457T] gi|281600024|gb|ADA73008.1| DNA polymerase III, delta subunit [Shigella flexneri 2002017] gi|332760989|gb|EGJ91277.1| DNA polymerase III, delta subunit [Shigella flexneri 4343-70] gi|332761269|gb|EGJ91555.1| DNA polymerase III, delta subunit [Shigella flexneri 2747-71] gi|332768258|gb|EGJ98443.1| DNA polymerase III, delta subunit [Shigella flexneri 2930-71] gi|333007986|gb|EGK27462.1| DNA polymerase III, delta subunit [Shigella flexneri K-218] gi|333021583|gb|EGK40833.1| DNA polymerase III, delta subunit [Shigella flexneri K-304] Length = 343 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|315924405|ref|ZP_07920627.1| DNA polymerase III, delta subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622284|gb|EFV02243.1| DNA polymerase III, delta subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 354 Score = 79.6 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 99/287 (34%), Gaps = 28/287 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++F G ++ + + Q + + + +++ + + I + S Sbjct: 33 NIYLFTGPEEYIAKMMEKQLIQTVIPEGLNQLNVMYFKNKDFE--IGEVIASCRQLPMMS 90 Query: 82 KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + +++++ + + K D + + I+I+ + K + +K+ + Sbjct: 91 EHRVVVLREETGLCHSSDTKTADAFCAYLENPEPSTILIVH--DSKPD-KRKKVYKTLKK 147 Query: 137 VLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLG------GDRIASRNELQ 189 V A+ Y N + L + I K I + L+ D N + Sbjct: 148 VAAVVDYEKLNMVELENWIAMRFKRAHKKIGTRTLRNLIERTRYLTSDACDMAMIDNRVA 207 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +L Y + L+ Q V +++ D I ++I+ + G + AI + F Sbjct: 208 QLIDYLGAEELVQHQDVAEVVPDAVDDNIFKMIDHALGGNMAGAIEMLGRFYLQGESPFG 267 Query: 250 LLHGFLQKFQLLEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR 291 + + I + + + I +K + + +K+ Sbjct: 268 VFGLLAGQ------IRTMMQVCLLSHRRMPVNMIAKKVGRPVFVVKK 308 >gi|169825540|ref|YP_001695715.1| hypothetical protein Bsph_p126 [Lysinibacillus sphaericus C3-41] gi|168994817|gb|ACA42356.1| Hypothetical yqeN protein [Lysinibacillus sphaericus C3-41] Length = 310 Score = 79.2 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 125/312 (40%), Gaps = 32/312 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G++ LI E + + ++ F + + ++ + LF Sbjct: 2 IHLLFGTEDFLIAEKKKEICRVEGVSISS-FDMRETSLTSALED-------AQMSDLFGG 53 Query: 83 KKIILIEN-----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNE--IKKNNTLRK-IA 131 KKI+ + + T KK+ D L + + + +++ N + K + K + Sbjct: 54 KKIVFLNDSYFLTGDTSKKITHDTDALLDYLESPNPDSTVVLVVNNEKLDKRKKVVKELL 113 Query: 132 EKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K T+ A Y + + E + K+++++A I+ LG D EL K Sbjct: 114 QKATTTFEAKPLY-----NAEKWLVERCKVYGKTLTRQAAVIMQQQLGKDLFLLDTELTK 168 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +++ I+E+ ++ ++ T + +I++ I K A+ + D S + Sbjct: 169 LVL-AVDNPTISEKDLEGVLSRTLEGDVFKIVDHVIY-KRSEALEILDDLFRLGHDSIQI 226 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L +F+L+ ++ I E + K I P + ++ +E ++++ +++ L Sbjct: 227 LLILAGQFRLIHQVKAIHELGESP-----KNILKGIHPYRLSMAEEQCQLYSIEDLQQRL 281 Query: 311 HKIDHRIHLARK 322 ++ Sbjct: 282 KDCAELDLQMKR 293 >gi|300959209|ref|ZP_07171288.1| DNA polymerase III, delta subunit [Escherichia coli MS 175-1] gi|300314194|gb|EFJ63978.1| DNA polymerase III, delta subunit [Escherichia coli MS 175-1] Length = 325 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 36 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 96 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 270 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 271 ALNRLSQTQLRQAVQLLTRTELTLKQ 296 >gi|188534476|ref|YP_001908273.1| DNA polymerase III subunit delta [Erwinia tasmaniensis Et1/99] gi|188029518|emb|CAO97395.1| DNA polymerase III, delta subunit [Erwinia tasmaniensis Et1/99] Length = 343 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 112/305 (36%), Gaps = 17/305 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G++ L+ E + + + + FS+ + + Q+ ++ + SLFS Sbjct: 21 YLLSGNEPLLLQETHDAIRTAAQQQGFTEHFSVALEAGTDWQE----IFSTCQALSLFSS 76 Query: 83 KK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSV 137 ++ ++++ + + L + + ++I+++ + K N+T K T+ Sbjct: 77 RQTLLLILPENGPNAAMSEQLLTLSTLLHSDILLILRATRLTKAQENSTWYKAF--STNA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + C L + ++ A Q+L G+ +A L++LS Sbjct: 135 VMVPCQTPEHAQLPRWVTNRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-LWP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + GK A+ + + LL + Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRSEDGEPVILLRTLQRD 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 LL + I + + + +R + ++L+ + + + L + Sbjct: 254 LLLLLTLQRQMT--QIPLRALFDQHR--VWQNRRALFGDALQRISAPQLAQALRLLTQTE 309 Query: 318 HLARK 322 ++ Sbjct: 310 LTLKQ 314 >gi|187934397|ref|YP_001885083.1| DNA polymerase III subunit delta [Clostridium botulinum B str. Eklund 17B] gi|187722550|gb|ACD23771.1| DNA polymerase III, delta subunit [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 115/324 (35%), Gaps = 18/324 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D+ LI + IN D +L+ ++ ++ + N + + S K Sbjct: 20 YIFCGLDEELIKDSINSILNKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77 Query: 84 KIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAE 132 K++++ ++ K L+ +I+ + +++ +K N +K+ Sbjct: 78 KVVIVYRANFLKDKSDEASNKIYKSILKYASDMPPYTILIMYHLFNDKREKPNKNKKLNS 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + C + + I + I +K+I + + + + E+ KL Sbjct: 138 LDKLITVVHCDKLRRDSYIKKINDLFKINKKNIGRIELIYFAEKVQSNFDIIKREIDKLI 197 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 SY + IT++ + +I + + +++ Q KI A+ + L ++ Sbjct: 198 SYT-DGKEITKRDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQHMLIIS 256 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + F L I + + ++ L + + + L K Sbjct: 257 NIQRHFIKLYDIKTGL-RQGKKISNFMTELRLPQFVCEK--LVAQSSKFTEKQLS-ELVK 312 Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336 + K L+K + + +L Sbjct: 313 LCVNTENNLKSSGLDKTMEMELLL 336 >gi|15676606|ref|NP_273750.1| DNA polymerase III subunit delta [Neisseria meningitidis MC58] gi|7225937|gb|AAF41125.1| DNA polymerase III, delta subunit [Neisseria meningitidis MC58] gi|316983688|gb|EFV62669.1| DNA polymerase III, delta subunit [Neisseria meningitidis H44/76] gi|325200607|gb|ADY96062.1| DNA polymerase III, delta subunit [Neisseria meningitidis H44/76] Length = 332 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|218767830|ref|YP_002342342.1| DNA polymerase III subunit delta [Neisseria meningitidis Z2491] gi|121051838|emb|CAM08144.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis Z2491] gi|319410080|emb|CBY90414.1| DNA polymerase III delta subunit [Neisseria meningitidis WUE 2594] Length = 332 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + + + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + ++ A ++G + L D LL + Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ S + + Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276 >gi|300951138|ref|ZP_07165003.1| DNA polymerase III, delta subunit [Escherichia coli MS 116-1] gi|300449593|gb|EFK13213.1| DNA polymerase III, delta subunit [Escherichia coli MS 116-1] Length = 327 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 38 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 97 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 98 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 272 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 273 ALNRLSQTQLRQAVQLLTRTELTLKQ 298 >gi|301049836|ref|ZP_07196776.1| DNA polymerase III, delta subunit [Escherichia coli MS 185-1] gi|300298431|gb|EFJ54816.1| DNA polymerase III, delta subunit [Escherichia coli MS 185-1] gi|324010482|gb|EGB79701.1| DNA polymerase III, delta subunit [Escherichia coli MS 60-1] Length = 327 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 38 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 97 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 98 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 272 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 273 ALNRLSQSQLRQAVQLLTRTELTLKQ 298 >gi|227545002|ref|ZP_03975051.1| DNA polymerase III, delta subunit [Lactobacillus reuteri CF48-3A] gi|300909963|ref|ZP_07127423.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri SD2112] gi|227185019|gb|EEI65090.1| DNA polymerase III, delta subunit [Lactobacillus reuteri CF48-3A] gi|300892611|gb|EFK85971.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus reuteri SD2112] Length = 343 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 130/336 (38%), Gaps = 27/336 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 V++ G + L + I+ F I ++ + +++ + ++ +T F Sbjct: 18 VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++I L+ EK+ LD L++ + + I++ + ++ + K Sbjct: 74 ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFAAPYEKLDGRKGIVKQ 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + + P ++ + L IS+ A L+ D L K Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + I + V ++ + + +++ A ++ A+ L LA + P + Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309 + +F+LL +I + ++ + + N+ P + + ++ R ++ + Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308 Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 L +I+ + ++ L + +L +Q + Sbjct: 309 LGLIRIEQSLKTTQRDPSL---LFQLFMLQYSQQSK 341 >gi|261366905|ref|ZP_05979788.1| DNA polymerase III, delta subunit [Subdoligranulum variabile DSM 15176] gi|282571020|gb|EFB76555.1| DNA polymerase III, delta subunit [Subdoligranulum variabile DSM 15176] Length = 344 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 116/342 (33%), Gaps = 21/342 (6%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K L ++ FY SD+ L+ + K + + D +L+ Sbjct: 10 KRLQSGCALYYFYASDEALVR---SAAAKALKVLNQDDPETTILDGPTPTVEEIVLA--A 64 Query: 75 NSTSLFSKKKIIL---IENLSTEKKVLDCLEEIIIKNICNHII---IIKS--NEI---KK 123 + S F K+++L I + K L L E + + +I+ ++ K+ Sbjct: 65 GTISFFGGKRLVLMPLIRPSTYSDKDLQELCETLADTENAIFVMTSVIEEKFGKLRPGKR 124 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 L E + I + L + S + ++ LL G D+ Sbjct: 125 EQKLIAACEGIGYCVQI--NKPGRSELQSMARSWAEDAGASFAPGSESALLDRCGEDQFL 182 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 +NE+ KL++ +IT++ V+ + T E++ + G+ A L Sbjct: 183 LQNEIAKLAALA-NYGIITQEMVQQLGTVTLDADTFEMVELVVSGRTDQAQKRLKTLLEL 241 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWN 302 + + + + L ++ ++ + S + + + +++ + Sbjct: 242 QNDPIMIAGALIGNYLDLYRV-LLGKRGRRSLADVAKDFGYGGKWSYRLGKTEKTASRFK 300 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 ++ + + L + + K ++ + + ++ + Sbjct: 301 RHQLEQCLCILQKLDLDLKSSKLDADLLLQKALCELSLAGRR 342 >gi|324016097|gb|EGB85316.1| DNA polymerase III, delta subunit [Escherichia coli MS 117-3] Length = 326 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 37 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 96 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 97 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 156 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 157 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 215 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 216 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 271 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 272 ALNRLSQTQLRQAVQLLTRTELTLKQ 297 >gi|170731976|ref|YP_001763923.1| DNA polymerase III subunit delta [Burkholderia cenocepacia MC0-3] gi|169815218|gb|ACA89801.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia MC0-3] Length = 364 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKTLAAIPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVASGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLTGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307 >gi|315299168|gb|EFU58422.1| DNA polymerase III, delta subunit [Escherichia coli MS 16-3] Length = 328 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 39 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 98 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 99 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 158 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 159 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 217 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 218 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 273 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 274 ALNRLSQSQLRQAVQLLTRTELTLKQ 299 >gi|300990029|ref|ZP_07179071.1| DNA polymerase III, delta subunit [Escherichia coli MS 45-1] gi|300407201|gb|EFJ90739.1| DNA polymerase III, delta subunit [Escherichia coli MS 45-1] Length = 331 Score = 79.2 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 42 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 220 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 276 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 277 ALNRLSQSQLRQAVQLLTRTELTLKQ 302 >gi|82775908|ref|YP_402255.1| DNA polymerase III subunit delta [Shigella dysenteriae Sd197] gi|309785929|ref|ZP_07680558.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1617] gi|81240056|gb|ABB60766.1| DNA polymerase III, delta subunit [Shigella dysenteriae Sd197] gi|308926040|gb|EFP71518.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1617] Length = 343 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAHAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVERAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|167817413|ref|ZP_02449093.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 91] Length = 321 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAVG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|301643946|ref|ZP_07243972.1| DNA polymerase III, delta subunit [Escherichia coli MS 146-1] gi|301077681|gb|EFK92487.1| DNA polymerase III, delta subunit [Escherichia coli MS 146-1] Length = 331 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 42 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 220 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 276 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 277 ALNRLSQTQLRQAVQLLTRTELTLKQ 302 >gi|300927260|ref|ZP_07142988.1| DNA polymerase III, delta subunit [Escherichia coli MS 182-1] gi|300416748|gb|EFK00059.1| DNA polymerase III, delta subunit [Escherichia coli MS 182-1] Length = 332 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 43 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 102 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 103 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 162 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 163 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 221 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 222 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 277 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 278 ALNRLSQTQLRQAVQLLTRTELTLKQ 303 >gi|315616441|gb|EFU97058.1| DNA polymerase III, delta subunit [Escherichia coli 3431] gi|323153637|gb|EFZ39885.1| DNA polymerase III, delta subunit [Escherichia coli EPECa14] Length = 340 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 286 ALNRLSQTQLRQAVQLLTRTELTLKQ 311 >gi|171910492|ref|ZP_02925962.1| DNA polymerase III, delta subunit, putative [Verrucomicrobium spinosum DSM 4136] Length = 382 Score = 79.2 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 93/255 (36%), Gaps = 28/255 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-----STFWNEINSTSL 79 + G+D + E + + + F + ++ + + + + Sbjct: 18 VVMGTDDARMKEAALKLSREQTPADAGDFGVDMIEGIAESAEHCGQIVRRVLDALQTLPF 77 Query: 80 FSKKKIILIENL--------STEKKVLDCLEEII----IKNICNHIIIIKSNEIKKNNTL 127 F +K++ ++N ++ +E II + ++ ++++ K Sbjct: 78 FGGEKLVWLKNANFLADSVVGRSNAAVEGIEAIIDYVEKHLPPDVKFLLSASQVDKR--- 134 Query: 128 RKIAEKFTSVLAISCY--PDN-----KIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 R ++ T + + + PD + ++ L+E S EA ++L+ G D Sbjct: 135 RSAYKRLTKLADVRVFDKPDTSKTGWEDEVIPLVERRARELGVSFENEALEMLVQLAGED 194 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +E++KLS Y + ++ V+ ++ + E+ NA + + A+ L Sbjct: 195 TRQLDSEVEKLSLYT-DGRRVSVDDVRLLVPLNRAGVVFELGNALGKRDLRRALELVRTL 253 Query: 241 LASKMPSHALLHGFL 255 + + +L + Sbjct: 254 IYQGQNAIGILLAAI 268 >gi|226331017|ref|ZP_03806535.1| hypothetical protein PROPEN_04947 [Proteus penneri ATCC 35198] gi|225201812|gb|EEG84166.1| hypothetical protein PROPEN_04947 [Proteus penneri ATCC 35198] Length = 273 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 97/259 (37%), Gaps = 13/259 (5%) Query: 21 HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 ++ +G++ L+ E I K H F+L + + + ++ S Sbjct: 18 RQSYLLWGNEPLLLQESQDAIQSVAKAQGFIEHYQFTL------DNNTDWNEIYSLCQSL 71 Query: 78 SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134 SLFS+++ ++ + + + L + + + ++I++ N++ K + + Sbjct: 72 SLFSQRQSLLLHLPENGPNAAMSEKLTRLSQELHQDLLLILRGNKLTKAQENSEWFKTLS 131 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + ISC L + + ++ ++ Q+L G+ +A +++LS Sbjct: 132 QNGTYISCLTPELDKLPNWVARRAKQKGLALDEQGNQLLCYCYEGNLLALAQAIERLSL- 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T V+ + D ++A + GK A + LL Sbjct: 191 LYPDGKLTLPRVEAAVNDASHFTPYHWVDALLTGKTQRAWHILQQLKREDSEPVILLRTL 250 Query: 255 LQKFQLLEKIHIIKECSNI 273 ++ L +H + +++ Sbjct: 251 QRELMQLITLHRESKTASL 269 >gi|169343608|ref|ZP_02864607.1| DNA polymerase III, delta subunit [Clostridium perfringens C str. JGS1495] gi|169298168|gb|EDS80258.1| DNA polymerase III, delta subunit [Clostridium perfringens C str. JGS1495] Length = 348 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S + Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|323191279|gb|EFZ76543.1| DNA polymerase III, delta subunit [Escherichia coli RN587/1] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQQQLRQAVQLLTRTELTLKQ 314 >gi|33864609|ref|NP_896168.1| DNA polymerase III subunit delta [Synechococcus sp. WH 8102] gi|33632132|emb|CAE06588.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 110/321 (34%), Gaps = 21/321 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D IN + + +L L+ E + +E + S Sbjct: 2 PIHLIWGDDAAARDRAINGLIEKVVDPSWASLNLSRLDGAEAGQAAQAL-DEARTPPFAS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++++L++ ++ D E + + +++ + K + LR + Sbjct: 61 GERLVLLQRSPFCNGCPTELADRFEAALTLIPDSSHLVLVNPS-KPDGRLRTTKALQKRI 119 Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 A + D L++ + + +A L+ +G D +EL Sbjct: 120 KAGLDQEQSFPLPAVWDGAGQ-RQLVQRTAEALGLRLEPDAIDALVDAIGTDSARLESEL 178 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KLS I I+ V +++ ++ + +A ++G +AI D + + P+ Sbjct: 179 RKLSL---RSITISADLVAELVGGLATNALQ-VGDALLEGNPGDAIARWDALIEAGEPAL 234 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + + + ++++ I + P + ++++ L+ Sbjct: 235 RIVATLSGQIRGWLWVSLMEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPPQRFLS 293 Query: 309 TLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 294 LLGRLLEVEARLKRGSQPGDA 314 >gi|333010051|gb|EGK29486.1| DNA polymerase III, delta subunit [Shigella flexneri K-272] gi|333020884|gb|EGK40144.1| DNA polymerase III, delta subunit [Shigella flexneri K-227] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLITLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|284920440|emb|CBG33501.1| DNA polymerase III, delta subunit [Escherichia coli 042] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEAVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|167740198|ref|ZP_02412972.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 14] Length = 336 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + + D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|295677675|ref|YP_003606199.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1002] gi|295437518|gb|ADG16688.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1002] Length = 375 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 12/261 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E + + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDLIRAAARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKALASTVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ V+D + + + ++ A + G + + D + +L Sbjct: 195 LYPSGSLSFDQVQDAVLNVARYDVFKLNEAMLAGDVGRLARMLDGLRGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISF 275 +++ + L +I Sbjct: 255 VEEVRTLLRIKRGVAAGKPLA 275 >gi|40063249|gb|AAR38076.1| DNA polymerase III, delta subunit, putative [uncultured marine bacterium 577] Length = 336 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 116/292 (39%), Gaps = 14/292 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG + L E + +K + + + +N + ++ N ++ F +K Sbjct: 20 YTVYGEEPLLAIESADLIRKMARMDGYIEREIFTINNQFKKSDLLLRSNSLSL---FGEK 76 Query: 84 KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA---EKFTSVL 138 ++I + + K+ +E+ + + ++ +I K + K EK S++ Sbjct: 77 RLIDIRVPSGKPGKEGGKAIEDYCCSLPPDTLTLVTLPKIDKQGKITKWFKTLEKTGSMI 136 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++ HL D I L I + + + + G+ +A+ E++KL+ Sbjct: 137 SVP--LVEFNHLPDWINHRLSIQNQRTDPDTLRFFAEKVEGNLLAANQEIKKLAL-LYPP 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ +K+ + + I ++ ++ + G+I I++ +L + Sbjct: 194 GTLSFTQIKNAVMEVARYDIFKLSDSMLTGEIARFILILKGLQGEGAAVPFILAILAGQI 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + L I + S ++ +++++ N+ ++ I+ + + L+ + L Sbjct: 254 RSLIIIRKGLD-SGKTYTQLMREA--NVWGDRQEIMGNAAKRVGLKLLVKAL 302 >gi|17158710|ref|NP_478221.1| DNA polymerase III subunit delta [Nostoc sp. PCC 7120] gi|17134659|dbj|BAB77217.1| alr7574 [Nostoc sp. PCC 7120] Length = 319 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 112/262 (42%), Gaps = 20/262 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+++YG D + + IN F+ + L+ E + + + E+ + Sbjct: 2 PVYLYYGEDTYSLNQKINHLVNQNVHAEWKDFNYIKLSGNE-KNITAKVFTEVMTLPFGD 60 Query: 82 KKKII------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN------TLRK 129 KI+ LIE+LS E LE + + ++I++I ++ K ++ T+ K Sbjct: 61 GNKIVHTDSDHLIESLSNEDN-NQELENQLSRIPASNILLI-ASNKKPDSRRTVVKTILK 118 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 A++ L + C+ +K +++LI + I Q ++ + L+ +G + + +E Sbjct: 119 YAQQEEFPL-VPCW--DKKGIVNLIGKYAAIHQVKLTPDVTDYLVEAIGNNTARADSEFA 175 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ Y +E +I+ + +K ++ + + Y +++ A ++ AI D L S Sbjct: 176 KLAVYAIE-KIISLEEIKQLVSNHNTDY-QKLTIAMLRNHSNLAIAQVDKLLDSNEHPLK 233 Query: 250 LLHGFLQKFQLLEKIHIIKECS 271 ++ F+ E Sbjct: 234 IVATITSIFRTWLITKAGVEAK 255 >gi|323164097|gb|EFZ49905.1| DNA polymerase III, delta subunit [Shigella sonnei 53G] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|225851289|ref|YP_002731523.1| DNA polymerase III, delta subunit [Persephonella marina EX-H1] gi|225645206|gb|ACO03392.1| DNA polymerase III, delta subunit [Persephonella marina EX-H1] Length = 332 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 115/317 (36%), Gaps = 17/317 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLV 56 MA + I+ + L V + YG ++ L +LI++ K H D S+ Sbjct: 1 MAETNIIQLIKNFSFEDLL--PVNLVYGKEELLKRQLIDKVKSFKGEDIHILWGDETSVK 58 Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116 + + S+ +++ N L+ + I ++ LD L +I + II Sbjct: 59 EIEEIFSS---SSLFSKGNIAVLWDLESFIKNLKKGDTERFLDTLRKI--NSPDRFFIIS 113 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 +++ + + E +++ P + I++ + K I L + Sbjct: 114 NKDKLPAKEPYKSLKEIANIIVSAPLTP---KAFVLSIKKKIEGNGKKIDDRTVLYLSSK 170 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 L D + ++ E++KL Y + ITE+ + ++ I +N A+ + Sbjct: 171 LKNDLMYAKQEIEKLLLYVSDKDEITEEDIDKVVIPKIEENIFVFLNRFFSKDPK-AVEI 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + L + L + + + + + P ++ Q+ Sbjct: 230 FINLIETTHHPFEVQSFLLGQLNKLLVFRSLLD-EGKPLDAVFSQLGIK-HPAQKGTFQK 287 Query: 297 SLRIWNKNLVRETLHKI 313 + + +K + E + ++ Sbjct: 288 LVSVLSKEDLIEMIKEL 304 >gi|209517541|ref|ZP_03266381.1| DNA polymerase III, delta subunit [Burkholderia sp. H160] gi|209502074|gb|EEA02090.1| DNA polymerase III, delta subunit [Burkholderia sp. H160] Length = 375 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 92/261 (35%), Gaps = 12/261 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTADRYF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKALAATVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ V+D + + + ++ A + G + + D + +L Sbjct: 195 LYPSGSLSFDQVQDAVLNVARYDVFKLNEAMLAGDVGRLARMLDGLRGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISF 275 +++ + L +I Sbjct: 255 VEEVRTLLRIKRGVAAGKPLA 275 >gi|26246621|ref|NP_752661.1| DNA polymerase III subunit delta [Escherichia coli CFT073] gi|91209688|ref|YP_539674.1| DNA polymerase III subunit delta [Escherichia coli UTI89] gi|110640869|ref|YP_668597.1| DNA polymerase III subunit delta [Escherichia coli 536] gi|117622856|ref|YP_851769.1| DNA polymerase III subunit delta [Escherichia coli APEC O1] gi|191173966|ref|ZP_03035484.1| DNA polymerase III, delta subunit [Escherichia coli F11] gi|218557578|ref|YP_002390491.1| DNA polymerase III subunit delta [Escherichia coli S88] gi|227884380|ref|ZP_04002185.1| DNA polymerase III subunit delta [Escherichia coli 83972] gi|237707386|ref|ZP_04537867.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA] gi|331656667|ref|ZP_08357629.1| DNA polymerase III, delta subunit [Escherichia coli TA206] gi|26107020|gb|AAN79204.1|AE016757_108 DNA polymerase III, delta subunit [Escherichia coli CFT073] gi|91071262|gb|ABE06143.1| DNA polymerase III, delta subunit [Escherichia coli UTI89] gi|110342461|gb|ABG68698.1| DNA polymerase III, delta subunit [Escherichia coli 536] gi|115511980|gb|ABJ00055.1| DNA polymerase III subunit delta [Escherichia coli APEC O1] gi|190905742|gb|EDV65363.1| DNA polymerase III, delta subunit [Escherichia coli F11] gi|218364347|emb|CAR02022.1| DNA polymerase III, delta subunit [Escherichia coli S88] gi|226898596|gb|EEH84855.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA] gi|227838466|gb|EEJ48932.1| DNA polymerase III subunit delta [Escherichia coli 83972] gi|294493627|gb|ADE92383.1| DNA polymerase III, delta subunit [Escherichia coli IHE3034] gi|307552510|gb|ADN45285.1| DNA polymerase III subunit delta [Escherichia coli ABU 83972] gi|307627922|gb|ADN72226.1| DNA polymerase III subunit delta [Escherichia coli UM146] gi|320194178|gb|EFW68810.1| DNA polymerase III delta subunit [Escherichia coli WV_060327] gi|323952782|gb|EGB48650.1| DNA polymerase III [Escherichia coli H252] gi|323958399|gb|EGB54105.1| DNA polymerase III [Escherichia coli H263] gi|331054915|gb|EGI26924.1| DNA polymerase III, delta subunit [Escherichia coli TA206] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 289 ALNRLSQSQLRQAVQLLTRTELTLKQ 314 >gi|300214463|gb|ADJ78879.1| DNA polymerase III, delta subunit [Lactobacillus salivarius CECT 5713] Length = 340 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 126/328 (38%), Gaps = 22/328 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L + + N F+ + + I+T + S FS Sbjct: 17 NVYLVLGEDTYL-NNKVKELFWNYIPESDREFNAAIYDMETTS--IATAIADAISAPFFS 73 Query: 82 KKKIILIEN-----LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +K++++I + T+K ++ L + + ++++ ++ K ++ + + E Sbjct: 74 EKRLVIITHPYFLTGDTKKHSIEQDVNELIGYLQNPSPDTLLVVLASYEKLDSRKKVVKE 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + N+ + + + + I K A L+ + NEL KL Sbjct: 134 LKSKAEIVDTSSLNESEIRQYLIKYCDEKKVIIEKRAIDRLIQLTNANFSKIMNELSKLI 193 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++ IT V ++ + + ++++ KI A L L K + Sbjct: 194 IATVDTKKITVSEVDRLVTKSLEQNVFDLVDFVRDKKIKEAFELYHELLEQKEEPIKINA 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--- 309 + +F+LL ++ I+ + + I + + P + + ++ R ++ N ++ Sbjct: 254 ILIGQFRLLLQVKIL-QKHSYDQGSIASTLK--VHPFRVKLAMQNARKFSNNSLKSAYLG 310 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337 L +I+ ++ + + L +FQ L Sbjct: 311 LAEIEEKLKTSSQNPEL----LFQLFLT 334 >gi|300996728|ref|ZP_07181515.1| DNA polymerase III, delta subunit [Escherichia coli MS 200-1] gi|300304443|gb|EFJ58963.1| DNA polymerase III, delta subunit [Escherichia coli MS 200-1] Length = 332 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 43 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 102 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 103 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 162 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 163 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 221 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 222 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFNKHR--VWQNRRGMMSE 277 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 278 ALNRLSQSQLRQAVQLLTRTELTLKQ 303 >gi|255320936|ref|ZP_05362110.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SK82] gi|262380211|ref|ZP_06073366.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SH164] gi|255302105|gb|EET81348.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SK82] gi|262298405|gb|EEY86319.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens SH164] Length = 331 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 139/330 (42%), Gaps = 30/330 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+++ + + + + +N + Sbjct: 10 KRVADARGTWILHGQEPLLEQNLLDAFRQSWQVQET---ERQRYDISSV-SDWKHVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS+ + + N+ + L L+ I N N ++++ S+ +K + + Sbjct: 66 NSLSLFSQHLAVEVHGNIKPDAGALKQLKNYIQHNESNLLLVVMPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+ + + YP + ++ + E L + +EA Q L+ + + +A++N L Sbjct: 124 VVEANGVVVPLVANYPKERQQILSIEAEKL---GIQLDQEAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++S E LI +H+ + D ++ +A + G + +I + + LAS P Sbjct: 181 MRVSDTFPEQRLILTEHLYACLQDQSRYSTYDLSDALLAGNLAQSIRIFQYLLASGEPMS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L ++ +LL ++ FE+ + I K + Q++LR N Sbjct: 241 LILWTISREMRLLMQL----------FEQPQNALQLGIWKTKISSYQQALRRLNPRQFLT 290 Query: 309 ---TLHKIDHRIHLARKKKYLEKNIIFQTI 335 L ID I ++ +++ Q I Sbjct: 291 WPGLLLHIDAAIKGMSEEN--AEHLCQQAI 318 >gi|16128623|ref|NP_415173.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. MG1655] gi|82543085|ref|YP_407032.1| DNA polymerase III subunit delta [Shigella boydii Sb227] gi|89107509|ref|AP_001289.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. W3110] gi|170080219|ref|YP_001729539.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170080320|ref|YP_001729640.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. DH10B] gi|193063341|ref|ZP_03044431.1| DNA polymerase III, delta subunit [Escherichia coli E22] gi|194429735|ref|ZP_03062251.1| DNA polymerase III, delta subunit [Escherichia coli B171] gi|238899917|ref|YP_002925713.1| DNA polymerase III, delta subunit [Escherichia coli BW2952] gi|256020592|ref|ZP_05434457.1| DNA polymerase III subunit delta [Shigella sp. D9] gi|256023748|ref|ZP_05437613.1| DNA polymerase III subunit delta [Escherichia sp. 4_1_40B] gi|260842866|ref|YP_003220644.1| DNA polymerase III, delta subunit HolA [Escherichia coli O103:H2 str. 12009] gi|260853892|ref|YP_003227783.1| DNA polymerase III, delta subunit HolA [Escherichia coli O26:H11 str. 11368] gi|307137257|ref|ZP_07496613.1| DNA polymerase III subunit delta [Escherichia coli H736] gi|331641143|ref|ZP_08342278.1| DNA polymerase III, delta subunit [Escherichia coli H736] gi|332281780|ref|ZP_08394193.1| DNA polymerase III delta subunit [Shigella sp. D9] gi|123452|sp|P28630|HOLA_ECOLI RecName: Full=DNA polymerase III subunit delta gi|15988195|pdb|1JR3|D Chain D, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii gi|16974835|pdb|1JQJ|C Chain C, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex gi|16974836|pdb|1JQJ|D Chain D, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex gi|61679670|pdb|1XXI|A Chain A, Adp Bound E. Coli Clamp Loader Complex gi|61679675|pdb|1XXI|F Chain F, Adp Bound E. Coli Clamp Loader Complex gi|238537886|pdb|3GLF|A Chain A, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537891|pdb|3GLF|F Chain F, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer- Template Dna gi|238537900|pdb|3GLG|A Chain A, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537905|pdb|3GLG|F Chain F, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna gi|238537914|pdb|3GLH|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537919|pdb|3GLH|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537924|pdb|3GLH|K Chain K, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide gi|238537929|pdb|3GLI|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|238537934|pdb|3GLI|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To Primer-Template Dna And Psi Peptide gi|145729|gb|AAA23675.1| DNA polymerase III delta subunit [Escherichia coli] gi|145785|gb|AAB59047.1| DNA polymerase III delta subunit [Escherichia coli] gi|1651267|dbj|BAA35287.1| DNA polymerase III, delta subunit [Escherichia coli str. K12 substr. W3110] gi|1778558|gb|AAB40841.1| DNA-directed DNA polymeraseIII delta chain [Escherichia coli] gi|1786859|gb|AAC73741.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. MG1655] gi|81244496|gb|ABB65204.1| DNA polymerase III delta subunit [Shigella boydii Sb227] gi|169888054|gb|ACB01761.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. DH10B] gi|169888155|gb|ACB01862.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12 substr. DH10B] gi|192930925|gb|EDV83529.1| DNA polymerase III, delta subunit [Escherichia coli E22] gi|194412216|gb|EDX28522.1| DNA polymerase III, delta subunit [Escherichia coli B171] gi|238860834|gb|ACR62832.1| DNA polymerase III, delta subunit [Escherichia coli BW2952] gi|257752541|dbj|BAI24043.1| DNA polymerase III, delta subunit HolA [Escherichia coli O26:H11 str. 11368] gi|257758013|dbj|BAI29510.1| DNA polymerase III, delta subunit HolA [Escherichia coli O103:H2 str. 12009] gi|260450193|gb|ACX40615.1| DNA polymerase III, delta subunit [Escherichia coli DH1] gi|309700878|emb|CBJ00175.1| DNA polymerase III, delta subunit [Escherichia coli ETEC H10407] gi|315135306|dbj|BAJ42465.1| DNA polymerase III subunit delta [Escherichia coli DH1] gi|323158906|gb|EFZ44917.1| DNA polymerase III, delta subunit [Escherichia coli E128010] gi|323938402|gb|EGB34656.1| DNA polymerase III [Escherichia coli E1520] gi|323943055|gb|EGB39214.1| DNA polymerase III [Escherichia coli E482] gi|323972095|gb|EGB67309.1| DNA polymerase III [Escherichia coli TA007] gi|331037941|gb|EGI10161.1| DNA polymerase III, delta subunit [Escherichia coli H736] gi|332104132|gb|EGJ07478.1| DNA polymerase III delta subunit [Shigella sp. D9] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|168212920|ref|ZP_02638545.1| DNA polymerase III, delta subunit [Clostridium perfringens CPE str. F4969] gi|170715509|gb|EDT27691.1| DNA polymerase III, delta subunit [Clostridium perfringens CPE str. F4969] Length = 348 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S + Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|167837873|ref|ZP_02464756.1| DNA polymerase III subunit delta [Burkholderia thailandensis MSMB43] Length = 323 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 110/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + F+ ++ +E + ST + SLF + Sbjct: 19 LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTPIGASQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K D L+ + + + ++++ + +A Sbjct: 76 RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALANGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P + L + I + L + + ++ A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + ++D + + + ++ A + G + D +L Sbjct: 195 LYPAGALTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307 >gi|322506761|gb|ADX02215.1| DNA polymerase III delta subunit [Acinetobacter baumannii 1656-2] Length = 329 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ E L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + + S P Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGDLAQSIKIFQYLIGSGEPES 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L +ID I Sbjct: 291 WSALLLQIDAAIK 303 >gi|313902202|ref|ZP_07835610.1| DNA polymerase III, delta subunit [Thermaerobacter subterraneus DSM 13965] gi|313467537|gb|EFR63043.1| DNA polymerase III, delta subunit [Thermaerobacter subterraneus DSM 13965] Length = 420 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 81/220 (36%), Gaps = 10/220 (4%) Query: 100 CLEEIIIKNICNHIIIIK-SNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 L + + +++I ++ + +R++ A++C P L + Sbjct: 157 ALLAYLDDPSPSAVLVISHPPDLDGRRAAVRRL---RQRGWAVACQPLRDEALGQWLARQ 213 Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217 K + EA L+ + D +EL K+++Y + IT ++ + Sbjct: 214 AAAWGKELDPEAVAWLVESGEPDLRRLASELAKVATYVGDRRRITAADLRQVGVAVATAG 273 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFE 276 + E+++A + G+ A+ L L + P LL +++++L + ++ +++ Sbjct: 274 VFELVDAIVAGRRRQAMELVGRLLDASEPPLRLLALIARQYRILAYAASLRRQGGDVADL 333 Query: 277 KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + ++ + R + L + Sbjct: 334 QAWLQLHP--FVARKAW--QQSRQLAPDRAMAALEAVLEA 369 >gi|300853975|ref|YP_003778959.1| DNA polymerase III subunit delta [Clostridium ljungdahlii DSM 13528] gi|300434090|gb|ADK13857.1| DNA polymerase III, delta subunit [Clostridium ljungdahlii DSM 13528] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 106/267 (39%), Gaps = 18/267 (6%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSKKKII 86 G D+ LI E I K + + + + ++ + N + S+KK++ Sbjct: 4 GIDELLIKENIKALIKKVINPNFMDLNYMKFDGSSLESFDP--VINACETLPFMSEKKVV 61 Query: 87 LIENLS----TEKKVLDCLEEI---IIKNICNHIII---IKSNEIKKNNTLRKIAEKFTS 136 L+ S + K+ + I + I+I + + K++ RKI Sbjct: 62 LVYRASFFGEDKNKLSTEFKTIHSYLKNLPKYCILIFYYVFKS--KRDKPGRKIYSVDKD 119 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS-RNELQKLSSYC 195 + + L + ++E K I K +I + + + ++ NE++KL Y Sbjct: 120 ICVVKADKVKGKQLENKVQEFFYERGKDIKKLDLRIFCSLMSENNLSIIENEVEKLCCYT 179 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 I + +K + + I +++NA KI +A+ + + + +L Sbjct: 180 YG-RNIEREDMKKMFLRSGDEDIFDLVNAISDKKIKDALYMLNELMYKGYKISYILSMVE 238 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282 ++F LL KI + E I+ E+I+++ Sbjct: 239 RQFNLLFKIKMCLE-ERITKEEIMKEL 264 >gi|292487608|ref|YP_003530480.1| DNA polymerase III subunit delta [Erwinia amylovora CFBP1430] gi|292898847|ref|YP_003538216.1| DNA polymerase III subunit delta [Erwinia amylovora ATCC 49946] gi|291198695|emb|CBJ45804.1| DNA polymerase III, delta subunit [Erwinia amylovora ATCC 49946] gi|291553027|emb|CBA20072.1| DNA polymerase III, delta subunit [Erwinia amylovora CFBP1430] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 102/292 (34%), Gaps = 15/292 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + + + V L EI + ++ + SLF+ + Sbjct: 21 YLLSGNEPLLLQEAQDAIRAAAQQQGYTEHVSVAL---EIGTDWQEIFSACQALSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138 + +L+ + + L + + ++I+++ + K N+ K + + Sbjct: 78 QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRATRLTKAQENSAWYKAF--SANAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A+ C L + ++ A Q+L G+ +A L++LS D Sbjct: 136 AVPCQTPEHGQLPRWVTMRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + D ++A + GK A+ + A LL + Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDSEPVILLRTLQRDL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 LL + + + + +R + E+L+ + + + Sbjct: 255 LLLLTLQRQMAY--TPLRTLYDRHR--VWQNRRALFAEALQRLTATRLAKAI 302 >gi|209917900|ref|YP_002291984.1| DNA polymerase III subunit delta [Escherichia coli SE11] gi|209911159|dbj|BAG76233.1| DNA polymerase III delta subunit [Escherichia coli SE11] Length = 343 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|218440391|ref|YP_002378720.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424] gi|218173119|gb|ACK71852.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424] Length = 324 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 124/319 (38%), Gaps = 18/319 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F+G D + + I + ++++ F+ L + I + +F Sbjct: 2 PVYLFWGEDDFAMTQEIEKLRQDLLDPNWVQFNYDKLTGDKADSIIEALNQAMT--PVFG 59 Query: 82 -KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAE-- 132 +++ + + + +L L+ + + +++ +++ K + L+ K+ E Sbjct: 60 MGNRLVWLVETTICSQCSEALLSELQRTLPHIPTDSHLLLTTSK-KPDKRLKSTKLIEQY 118 Query: 133 -KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K I + ++ ++ ++ ++ A ++L ++G + NEL KL Sbjct: 119 AKSQEFALIPPWKTDE--ILQKVQSLARSKGVKLTATAVELLAQSVGNNTRQLWNELDKL 176 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S Y + I V + + + ++ A I+G+ A+ L L P+ ++ Sbjct: 177 SLY-GDHKPID-HDVVASLVNVNTQSSLQLAAAIIKGETPKALGLVADLLNHNEPALKIV 234 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + +F++ + + E EK + + P + IL++ ++ + + +L Sbjct: 235 ATLVGQFRVWTIVKLKLEAGEKD-EKALATAAELGNPKRVFILRKEVQGLKGSQLLGSLP 293 Query: 312 KIDHRIHLARKKKYLEKNI 330 + ++ + + Sbjct: 294 ILLDLEFNLKRGADPLQTL 312 >gi|53713687|ref|YP_099679.1| hypothetical protein BF2396 [Bacteroides fragilis YCH46] gi|60681960|ref|YP_212104.1| hypothetical protein BF2480 [Bacteroides fragilis NCTC 9343] gi|253565635|ref|ZP_04843090.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52216552|dbj|BAD49145.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60493394|emb|CAH08180.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251945914|gb|EES86321.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 339 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 41/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I+++ K + + L AE + + Sbjct: 79 SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVVCHKHGALDRRKKL--AAEIEKTGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 + L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPGG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ + A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + + R+ L ++R + + + +I + Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLT-AMRKYTGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + +I+ + + I Sbjct: 313 DAKSKGVGNTSISDGDILRELVFKI 337 >gi|21325117|dbj|BAB99739.1| DNA polymerase III delta subunit [Corynebacterium glutamicum ATCC 13032] Length = 325 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76 V + G D+ L E NI D + L A EI + + + S Sbjct: 12 VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 64 Query: 77 TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 SLF++ +++++ N+ + + V L + + ++I++ S + + ++K+ EK Sbjct: 65 PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 123 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 V + D +++ + ++ + LL +G D + + +L Sbjct: 124 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 181 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + V+ + +I ++ G++ A+ L AL Sbjct: 182 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQMSKAVASTRRALQLGTSPVALAAAL 239 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311 K + +++ + I+ ++ ++ +++ + R W+ + V E + Sbjct: 240 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 295 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 +D + I + +A+ A + Sbjct: 296 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 325 >gi|150015706|ref|YP_001307960.1| DNA polymerase III subunit delta [Clostridium beijerinckii NCIMB 8052] gi|149902171|gb|ABR33004.1| DNA polymerase III, delta subunit [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 15/283 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D+ I + I+ K +L+ ++ + + N + +K Sbjct: 20 YIFCGLDEEFIKDGISLIIKKNIAEEFMDLNLIRIDGMNTSFDA--IMNACETMPFMGEK 77 Query: 84 KIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN--NTLRKIAE 132 K++++ + S K D I +I+ K++ N +K+A Sbjct: 78 KVVVVYRSNFLQDKTDSSGTKIYNDIKSYISNLPPYTVLIMYYLLNDKRDRPNKNKKLAT 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 S+ + C + + + E K I + + + + E KL Sbjct: 138 IGKSLTIVYCDKLKRDKYLKKVSEVFKEKGKQIGRTELSYFCEKVYNNFDIIKREADKLI 197 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 SYC + I ++ + +I + +++ KI AI L ++ Sbjct: 198 SYC-GEREIKKEDIDILISKSSEDDTFDLVELIATKKIDKAIDTMKEILYKSDQHMLIIS 256 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + F L +I I + + + ++ I+Q Sbjct: 257 AIQKHFLRLYEIKIKL-SNGKKVDDFMSDYRLPQFVCEKLIMQ 298 >gi|218288647|ref|ZP_03492924.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241304|gb|EED08479.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 336 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 114/335 (34%), Gaps = 26/335 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YGS+ GL ++ +N + S++ + E + E+ S SL Sbjct: 18 VYLLYGSEIGLFDWFCDELIRNQHFS-----SILRFDYQENGFEPAEM--ELCSYSLLGD 70 Query: 83 KKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + ++ + N +D L + + + +++ K + R++ + Sbjct: 71 RPLVYVRNATAFTPDGRSGPDVDRLAAYLEQPVAGRTLVLSVPSDKLDER-RRVTKLAKR 129 Query: 137 VLAISCYPDNKIHLMDLIE-ESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSY 194 +SC P ++ E L + +I K+A L +A NE KL +Y Sbjct: 130 HAVVSC-PVPSRDRDAMVRLERLARSKAVAIDKDALAELWRRTQSLTLAM-NEFDKLRAY 187 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 IT HV +++ + I+ +QG++ + D + +L+ Sbjct: 188 AGG-GPITRDHVLELVPMQAEDSVFTWIDWAVQGQVASVFEALDGLTRQGYDAFSLIALL 246 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ +L+ + E + P +++ + + + Sbjct: 247 ARQVRLMAFAKGAANLEQRAKEL-------GVHPYALRTAARQSARFSEQKLARLVRVLA 299 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349 ++ + + + ++ +A A Sbjct: 300 DAEWDVKRGRLAPEVALNLVLMELAHAASTTPRNR 334 >gi|170021003|ref|YP_001725957.1| DNA polymerase III subunit delta [Escherichia coli ATCC 8739] gi|169755931|gb|ACA78630.1| DNA polymerase III, delta subunit [Escherichia coli ATCC 8739] Length = 343 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEHLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|288801477|ref|ZP_06406929.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288331558|gb|EFC70044.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 342 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 99/260 (38%), Gaps = 14/260 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G + I ++ + ++ F+ +L ++ + + + S Sbjct: 24 PVYILMGDESYYIDQITDAIANSVLKPEEQDFNQTILFGADVTA--AQVVDIAKGYPMMS 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++ K + D LE+ ++ + + I++ K+ I K + AE + Sbjct: 82 SHRVVIVKEAQNVKSL-DALEKYLVNPMPSTILVWCHKNGLIDKRKKVVSKAES----VG 136 Query: 140 ISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I K L I + L I ++ ++ ++G D +EL K+ Sbjct: 137 IVFESKKKRDYELNTFINKYLKEKNVQIDDKSSDMIAEHVGADLSRLVSELDKIILSLDN 196 Query: 198 DIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254 IT + V+ I + E+ +A I +Y A ++ ++F + +A L Sbjct: 197 QNRIITPEMVEQKIGISKEFNTFELRSAIINKDVYKANLIINYFEKNPKSGSIYAFLPLL 256 Query: 255 LQKFQLLEKIHIIKECSNIS 274 FQ L + SN + Sbjct: 257 FSYFQNLMIAYYAPNRSNEA 276 >gi|224823413|ref|ZP_03696522.1| DNA polymerase III, delta subunit [Lutiella nitroferrum 2002] gi|224603868|gb|EEG10042.1| DNA polymerase III, delta subunit [Lutiella nitroferrum 2002] Length = 334 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 8/205 (3%) Query: 66 NISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + S + S SLF+ K++ I + + L+ + + + ++ ++++ Sbjct: 60 DWSQLTEAMGSVSLFASLKLLELRIPGGKPGSEGGEALQRLAEAPPADTVTLVILPKLER 119 Query: 124 ---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 ++ EK V+ + ++ L I L S+S+EA + G+ Sbjct: 120 VQLSSKWFAALEKAAVVVHAA--AVSRQQLPGWISRRLKAQGLSLSEEALSFFADRVEGN 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +A+R E+ KL+ + ++D + + + ++ A + G + D Sbjct: 178 LLAARQEVDKLAI-LHPGASLDLDAIRDAVANVARFDVFQLSAAWLGGDTVRVTRMLDGL 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIH 265 A +L F + ++L K+ Sbjct: 237 AAEGEAPVLVLWSFSEDVRMLLKLR 261 >gi|260866788|ref|YP_003233190.1| DNA polymerase III, delta subunit HolA [Escherichia coli O111:H- str. 11128] gi|257763144|dbj|BAI34639.1| DNA polymerase III, delta subunit HolA [Escherichia coli O111:H- str. 11128] gi|323179883|gb|EFZ65440.1| DNA polymerase III, delta subunit [Escherichia coli 1180] Length = 343 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 112 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 113 -----RGNKLSKAQENAAWFTALANRSVQVICQTPEQAQLPRWVAARAKQLNLELDDAAN 167 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 A+ + LL ++ LL + ++ ++ + K + + Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 283 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|261380323|ref|ZP_05984896.1| DNA polymerase III, delta subunit [Neisseria subflava NJ9703] gi|284796840|gb|EFC52187.1| DNA polymerase III, delta subunit [Neisseria subflava NJ9703] Length = 333 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + E + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K D L+ + + + +I +++K K + Sbjct: 74 DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L I+ L I EA + + G+ +A+R E++KL+ + Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPQG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 LI + + + ++ A ++G L D +A + Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 254 RTLIRLTAALKQGQNIQSLR 273 >gi|110802048|ref|YP_699324.1| DNA polymerase III subunit delta [Clostridium perfringens SM101] gi|110682549|gb|ABG85919.1| DNA polymerase III, delta subunit [Clostridium perfringens SM101] Length = 348 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S K Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREID 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|260584665|ref|ZP_05852411.1| DNA polymerase III, delta subunit [Granulicatella elegans ATCC 700633] gi|260157688|gb|EEW92758.1| DNA polymerase III, delta subunit [Granulicatella elegans ATCC 700633] Length = 342 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 119/336 (35%), Gaps = 24/336 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + L F +++ ++ N EI + + S F Sbjct: 17 PIYMVQGKEDYLQNWARQVFLESVVAPEDQELNVGRFNMEEISVQTAI--EDAESVPFFG 74 Query: 82 KKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 ++++++ + S L+ L+ + + + +++ + K ++ +KI + Sbjct: 75 DRRLVMVDKPYFLTGEKEKSKIDHQLERLQFYLENPLDSSVVVFFAPYEKLDSR-KKIVK 133 Query: 133 KFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + V + D + + +++ + S+ + L L + E+ Sbjct: 134 QLKKVAVL---LDASSLEEKDVRAMVQHKVQEQGVSMETSVLHLFLEKLHYSLTDAMREI 190 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL ++ +I V ++ + I E+ A ++ AI + L K Sbjct: 191 DKLILSAMDTKVIDSDLVATLVPKSLEQNIFELGEAVLRKDSKVAIEIYRDLLLQKEDPI 250 Query: 249 ALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + L +F+ LL+ ++ KE + + + I P + + R ++ L+ Sbjct: 251 KMNAILLGQFRLLLQVSYLQKEGYHEPEMQKVLG----IHPYRVKLALGQSRKFSIALLE 306 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + +++ + IL Q + Sbjct: 307 AAYRLLVETEYALKTGLGMKELQLETFILKFCQKSA 342 >gi|194468433|ref|ZP_03074419.1| DNA polymerase III, delta subunit [Lactobacillus reuteri 100-23] gi|194453286|gb|EDX42184.1| DNA polymerase III, delta subunit [Lactobacillus reuteri 100-23] Length = 343 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 124/319 (38%), Gaps = 24/319 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81 V++ G + L + I+ F I ++ + +++ + ++ ++ F Sbjct: 18 VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMASPFFG 73 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++I L+ EK+ LD L++ + + I++ + ++ + K Sbjct: 74 ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFAAPYEKLDGRKGIVKQ 133 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + + + P ++ + L IS+ A L+ D L K Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + I + V ++ + + +++ A ++ A+ L LA + P + Sbjct: 192 LKILAYREKKIDQSMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309 + +F+LL +I + ++ + + N+ P + + ++ R ++ + Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308 Query: 310 --LHKIDHRIHLARKKKYL 326 L +I+ + ++ L Sbjct: 309 LGLIRIEQSLKTTQRDPSL 327 >gi|291515518|emb|CBK64728.1| DNA polymerase III, delta subunit [Alistipes shahii WAL 8301] Length = 356 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 10/244 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G + I L +Q I F+ + + + + N + + Sbjct: 30 IYLLMGEESYFIDALSDQLAATILDEAARAFNQITVYGRDSEA--GQVINLCRQMPMMGQ 87 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140 ++++++ K + D L K I++I K K + K + + Sbjct: 88 YQVVILKEAQQLKGL-DKLALYTQKPSPTTILVICHKEKNADKRSAFYKGC--AANGTVL 144 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLEDI 199 + +++ + +I +A +L +LG D NE++KL S Sbjct: 145 ESVRPRDYEIAAWLQQFIRQKGFTIDPKALSMLTDHLGTDIAKISNEIRKLTVSLPEGTQ 204 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH--GFLQK 257 IT+ ++ I + E+ A + + A+M+A+ F + + LL + Sbjct: 205 RITDADIEANIGISKDFNNFELCKAVVTRDMARALMIAEHFARNPKDNPLLLTVMALFGQ 264 Query: 258 FQLL 261 F+ L Sbjct: 265 FKEL 268 >gi|86133173|ref|ZP_01051755.1| DNA polymerase III delta subunit [Polaribacter sp. MED152] gi|85820036|gb|EAQ41183.1| DNA polymerase III delta subunit [Polaribacter sp. MED152] Length = 333 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 112/305 (36%), Gaps = 15/305 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + ++N+ F+L V+ + I + + + Sbjct: 18 PIYFLMGEEPYYIDKISDFIEENVLDESEKGFNLQVMYGRD--ATIEDIVSSAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++++++ + ++ L +++I K + + + L Sbjct: 76 ERQVLIVKEAQDLSRSIEKLVAYASNPQPTTVLVINYKYKKLDKRKKLHKAIAKTGLVYE 135 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + D I L + I +A Q+L+ LG D NEL KL+ ++ +I Sbjct: 136 SKKLYDNKVADWIRRVLSGKKYQIEPKAAQMLVEFLGTDLSKIANELDKLTLILPQETII 195 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259 + H+++ I + E++ A + A + ++F+ + P+ + F Sbjct: 196 NDTHIEENIGISKDFNNFELLKAIGDKNVVKANRIINYFVENPKNNPTIMTISLLNNFFT 255 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ---ESLRIWNKNLVRETLHKIDHR 316 L H + N S + + + NI ++ + R + V + + + Sbjct: 256 KLLLFHGL---QNKSKDAVSKALGVNIYF-----VEDYFSASRNYPMRKVAQVITMLRDA 307 Query: 317 IHLAR 321 ++ Sbjct: 308 DVKSK 312 >gi|265764011|ref|ZP_06092579.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_16] gi|263256619|gb|EEZ27965.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_16] gi|301163399|emb|CBW22949.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 339 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I+++ K + + L AE + + Sbjct: 79 SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVVCHKHGTLDRRKKL--AAEIEKTGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 + L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPGG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ + A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + + R+ L ++R + + + +I + Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLT-AMRKYTGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + +I+ + + I Sbjct: 313 DAKSKGVGNTSISDGDILRELVFKI 337 >gi|169334725|ref|ZP_02861918.1| hypothetical protein ANASTE_01131 [Anaerofustis stercorihominis DSM 17244] gi|169257463|gb|EDS71429.1| hypothetical protein ANASTE_01131 [Anaerofustis stercorihominis DSM 17244] Length = 343 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 20/254 (7%) Query: 39 NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKV 97 + K + + ++ F+ V + ++ +I+ I + + + ++ILI+ + K Sbjct: 41 DSLKNALILKDYEDFNYSVFDGKKL--DINKISELIETLPMLDEHRLILIKSEYAKNKDF 98 Query: 98 LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156 L EII + +III S K L K +K ++ + + L + I Sbjct: 99 SKKLNEIIKDIPPSTVIIIWSEGSFDKRTALFKTIKKEGDIVDFEKFKE--YKLENWIRS 156 Query: 157 SLLIGQKSISKEAKQILLANLG-------GDRIASRNELQKLSSYCLEDILITEQHVKDI 209 + ++K+A + G D +E+ KLS L I + VK I Sbjct: 157 KIKNKNLILTKDAIGYFIEASGYLLDGSEVDLGYFVSEIDKLS--SLGKREIDLEDVKKI 214 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 I I ++ +A A L + + +L ++ LE +++ KE Sbjct: 215 ISVNIKDEIFKLTDALRDKDTDYAFRLLSNLEYNNVNFMQILAVVIRN---LENMYLCKE 271 Query: 270 --CSNISFEKIIQK 281 S + I++ Sbjct: 272 YMKKRKSEQDIVKD 285 >gi|319942762|ref|ZP_08017066.1| hypothetical protein HMPREF9464_02285 [Sutterella wadsworthensis 3_1_45B] gi|319803642|gb|EFW00592.1| hypothetical protein HMPREF9464_02285 [Sutterella wadsworthensis 3_1_45B] Length = 335 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 100/315 (31%), Gaps = 16/315 (5%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + N ++ GS+ L+ E + ++ + ++ L+A + S Sbjct: 8 LAADLANRRELAPFWLVTGSEDLLMLESADLLRRRARELGYTDRQVLELSAS---ADWSQ 64 Query: 70 FWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 + S +F KK + + + K L E + + + + + Sbjct: 65 LPDAAASIGMFDDKKFLEVRLPSGRPGIKGNKALPEFVERPVDGVVTLFTMPRPDWQGQK 124 Query: 128 RKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + + C P + L + + ++ +++ + + G+ +A++ Sbjct: 125 AAWWQALVKAATVVECDPVERAQLPQWLAGRMRANGQTAARDVLEAFADLVEGNLLAAKQ 184 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E+ KLS +T + ++ + + E ++ + + D A P Sbjct: 185 EVGKLSL-LFPQGELTLEQIEASVGNCSRYTTEALVESFCTASADRTARIVDGLEAQGEP 243 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL + + L K+ E S K + N ++ + R + Sbjct: 244 LPFLLAILTNQIRSLIKLRASFETSG-------NLYVKGVF--ATNAMKAAARRIPLKRL 294 Query: 307 RETLHKIDHRIHLAR 321 L L++ Sbjct: 295 AAALDVCADIDRLSK 309 >gi|319638099|ref|ZP_07992863.1| DNA polymerase III [Neisseria mucosa C102] gi|317400744|gb|EFV81401.1| DNA polymerase III [Neisseria mucosa C102] Length = 333 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + E + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K D L+ + + + +I +++K K + Sbjct: 74 DLKLLEIHIPNGKPGKNGGDALQAFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L I+ L I EA + + G+ +A+R E++KL+ + Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPKG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 LI + + + ++ A ++G L D +A + Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 254 RTLIRLTAALKQGQNIQSLR 273 >gi|188994865|ref|YP_001929117.1| hypothetical protein PGN_1001 [Porphyromonas gingivalis ATCC 33277] gi|188594545|dbj|BAG33520.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 335 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 95/267 (35%), Gaps = 16/267 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I EL + ++ F+ V+L + +++ NE + Sbjct: 18 PLYLLAGEEPFYIDELATLLETHVVPVDEWDFNRVILYGD--KTSVADIANEARRFPMMG 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV---L 138 ++++I++ + ++I + K AEK V Sbjct: 76 RRQLIVVREAQLVDNIDLLEAHYGTFPDTTILVIAYKKKPDKRKAFYTKAEKLGKVFVSE 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197 I Y + D I + + ++S E +L LG D NEL KL + Sbjct: 136 TIPDY-----KMPDFILSAAAGKKLTVSPEVAYMLADYLGNDLEKLMNELDKLILITQDS 190 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLHGFL 255 ++T + V+ I + E++ A + + +A +F ++ P A L Sbjct: 191 RGVVTSEIVEQHIGVSKSFNNFELLRAIVNRETGKTFRIAHYFARNEKEHPIQATLPVLF 250 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282 F L + + + + + I++ Sbjct: 251 NYFSNLMIVCYLPQ---KNPDAIMKAL 274 >gi|114778441|ref|ZP_01453286.1| hypothetical protein SPV1_12752 [Mariprofundus ferrooxydans PV-1] gi|114551285|gb|EAU53843.1| hypothetical protein SPV1_12752 [Mariprofundus ferrooxydans PV-1] Length = 329 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 42/337 (12%), Positives = 107/337 (31%), Gaps = 18/337 (5%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71 + L H + +G D+ + E + + ++ E+ + Sbjct: 4 NPARLLPAEHSCYYLHGEDQDALVEAAELLLA----DGDPEATRLRVDVTEL----ARIE 55 Query: 72 NEINSTSLFSKK---KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + LF ++ + K+ L+ N +II + I+ L Sbjct: 56 TASRNRGLFGPTYCYALVRNAQSANPKQTEHLLKMSRSVAPGN-RLIICAPGIEWRKALH 114 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K + T + + + E + ++ E Q + L G R A+R + Sbjct: 115 KKMKAETVLPQCEFALPDVAGFTRWLGEEVSRAGLQLAPETVQWMGERLCGMRQAARQLI 174 Query: 189 QKLSSYCLEDILITEQHVK-DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L Y + + V +++ + +EE +A + + + ++ Sbjct: 175 ARLGCYDGGEGALLGMDVVGELLGERAPGALEEWCHAVAMREPHALSLARRLLAEQQVAE 234 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 +L + Q L + + + + + + RN + +R W + Sbjct: 235 VQMLSWLGTRMQQLLMYRWYQSQHDRNPLQAAK-----VFGDARNRVGGEVRCWRGAELS 289 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + +I L + +K+++ + + A + Sbjct: 290 AAVRRISDAEKLIKGASLEDKSVVMERLTLDLVGAKR 326 >gi|312795140|ref|YP_004028062.1| DNA polymerase III, delta subunit [Burkholderia rhizoxinica HKI 454] gi|312166915|emb|CBW73918.1| DNA polymerase III, delta subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 385 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 107/297 (36%), Gaps = 15/297 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L E + + + ++ + + S S SLF Sbjct: 18 RLYVVYGDEPLLAQEALARIRAAARAAGFTERNVFSVERGF---DWSLLLGATQSMSLFG 74 Query: 82 KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138 ++++I I K D L+ + + + + +I + + Sbjct: 75 ERQLIELRIPTGKPGKDGGDALKALAASDNPDLLTLIALPRLDAATQKTAWFTALVQAGV 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSS 193 AI + L + I + L Q+ + + A Q + + G+ +A+ E+QKL Sbjct: 135 AIRIDTIERAQLPNWIAQRLAAQQQRLVAGDAGRRALQFIAERVEGNLLAAHQEIQKLGL 194 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +T + V+D + + + ++ A + G + + D + +L Sbjct: 195 -LYPAGELTLEQVQDAVLNVARYDVFKLNEAMLAGDVARLARMLDGLRGEGEATVLVLWA 253 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L+ ++ + L Sbjct: 254 VVEEIRALARIKRGL-TAGKPLASLMRENR--VWGPRERLMGPALQRVDERSLERAL 307 >gi|225076531|ref|ZP_03719730.1| hypothetical protein NEIFLAOT_01579 [Neisseria flavescens NRL30031/H210] gi|224952210|gb|EEG33419.1| hypothetical protein NEIFLAOT_01579 [Neisseria flavescens NRL30031/H210] Length = 333 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + E + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K D L+ + + + +I +++K K + Sbjct: 74 DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L I+ L I EA + + G+ +A+R E++KL+ + Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPQG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 LI + + + ++ A ++G L D +A + Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 254 RTLIRLTAALKQGQNIQGLR 273 >gi|170695379|ref|ZP_02886525.1| DNA polymerase III, delta subunit [Burkholderia graminis C4D1M] gi|170139779|gb|EDT07961.1| DNA polymerase III, delta subunit [Burkholderia graminis C4D1M] Length = 373 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 103/286 (36%), Gaps = 15/286 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K+ + L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGAEALKALAGSVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + + D + + + ++ A + G + + D + +L Sbjct: 195 LYPAGSLSFEQIHDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +++ + L +I + ++++ + + ++ +L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSR 297 >gi|90961658|ref|YP_535574.1| DNA polymerase III subunit delta [Lactobacillus salivarius UCC118] gi|227890746|ref|ZP_04008551.1| DNA polymerase III subunit delta [Lactobacillus salivarius ATCC 11741] gi|90820852|gb|ABD99491.1| DNA polymerase III, delta subunit [Lactobacillus salivarius UCC118] gi|227867684|gb|EEJ75105.1| DNA polymerase III subunit delta [Lactobacillus salivarius ATCC 11741] Length = 340 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 126/328 (38%), Gaps = 22/328 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L + + N F+ + + I+T + S FS Sbjct: 17 NVYLVLGEDTYL-NNKVKELFWNYIPESDREFNAAIYDMETTS--IATAIADAISAPFFS 73 Query: 82 KKKIILIEN-----LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +K++++I + T+K ++ L + + ++++ ++ K ++ + + E Sbjct: 74 EKRLVIITHPYFLTGDTKKHSIEQDVNELIGYLQNPSPDTLLVVLASYDKLDSRKKVVKE 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + N+ + + + + I K A L+ + NEL KL Sbjct: 134 LKSKAEIVDTSSLNESEIRQYLIKYCDGKKVIIEKRAIDRLIQLTNANFSKIMNELSKLI 193 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++ IT V ++ + + ++++ KI A L L K + Sbjct: 194 IATVDTKKITVSEVDGLVTKSLEQNVFDLVDFVRDKKIKEAFELYHELLEQKEEPIKINA 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--- 309 + +F+LL ++ I+ + + I + + P + + ++ R ++ N ++ Sbjct: 254 ILIGQFRLLLQVKIL-QKHSYDQGSIASTLK--VHPFRVKLAMQNARKFSNNSLKSAYLG 310 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337 L +I+ ++ + + L +FQ L Sbjct: 311 LAEIEEKLKTSSQNPEL----LFQLFLT 334 >gi|288936547|ref|YP_003440606.1| DNA polymerase III subunit delta [Klebsiella variicola At-22] gi|290510397|ref|ZP_06549767.1| DNA polymerase III, delta subunit [Klebsiella sp. 1_1_55] gi|288891256|gb|ADC59574.1| DNA polymerase III, delta subunit [Klebsiella variicola At-22] gi|289777113|gb|EFD85111.1| DNA polymerase III, delta subunit [Klebsiella sp. 1_1_55] Length = 344 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 91/251 (36%), Gaps = 8/251 (3%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLFS ++ ++++ + + L +I + ++I++ N++ K Sbjct: 70 QALSLFSSRQTLLLILPENGPNAAINEQLATLIGLLHDDLLLIVRGNKLTKAQENAAWLT 129 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + +SC L + Q + A Q+L G+ +A L++L Sbjct: 130 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 189 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + D +T V+ + D ++A + GK + + LL Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ ++ + K + +R +L ++L + +R+ + Sbjct: 249 RTLQRELLLLVTLK--RQSTHTPLRSLFDKHR--VWQNRRQLLSDALARLSGEQLRQAVT 304 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 305 LLTRAELTFKQ 315 >gi|313158092|gb|EFR57497.1| DNA polymerase III, delta subunit [Alistipes sp. HGB5] Length = 356 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 86/245 (35%), Gaps = 10/245 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I + + + F+ + + + + N + Sbjct: 29 PVYLLMGEESYFIDAIAERLATTVLGEAERAFNQITVYGKDSEA--GQVINLCRQMPMMG 86 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++ + + + LD L K I++I K K + K + Sbjct: 87 SYQVVILKE-AQQLRGLDKLSLYTQKPSPTTILVICHKEKNADKRSAFYKGC--AANGAV 143 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198 + + +++ + +I +A +L +LG D NEL KL Sbjct: 144 LESVRPRDYEIASWLQQFIAKKGLAIDAKALSMLTDHLGTDISKISNELGKLVVSLPEGT 203 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT+ ++ I + E+ A + + A+M+A+ F + P + Sbjct: 204 KRITDADIEANIGISKDFNNFELCKAVVTRDMARALMIAEHFARNPKDNPLLVTVLALFG 263 Query: 257 KFQLL 261 +F+ L Sbjct: 264 QFKEL 268 >gi|206576965|ref|YP_002239705.1| DNA polymerase III, delta subunit [Klebsiella pneumoniae 342] gi|206566023|gb|ACI07799.1| DNA polymerase III, delta subunit [Klebsiella pneumoniae 342] Length = 344 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 91/251 (36%), Gaps = 8/251 (3%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLFS ++ ++++ + + L +I + ++I++ N++ K Sbjct: 70 QALSLFSSRQTLLLILPENGPNAAINEQLATLIGLLHDDLLLIVRGNKLTKAQENAAWLT 129 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + +SC L + Q + A Q+L G+ +A L++L Sbjct: 130 TLAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDNAASQLLCYCYEGNLLALAQALERL 189 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + D +T V+ + D ++A + GK + + LL Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ ++ + K + +R +L ++L + +R+ + Sbjct: 249 RTLQRELLLLVTLK--RQSTHTPLRSLFDKHR--VWQNRRQLLSDALARLSGEQLRQAVT 304 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 305 LLTRAELTFKQ 315 >gi|297570439|ref|YP_003691783.1| DNA polymerase III delta [Desulfurivibrio alkaliphilus AHT2] gi|296926354|gb|ADH87164.1| DNA polymerase III delta [Desulfurivibrio alkaliphilus AHT2] Length = 478 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 2/156 (1%) Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + L +LI E+L K I +A ++LL +G +A E +KL+ Y E I Sbjct: 239 KEQAALLKNLIHETLAGFNKKIRPDALELLLERVGFHPVAVVMEAEKLALYLDEQETIGR 298 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 + V +++ T I E+ A G++ +I + + M A+L G + L Sbjct: 299 REVAELVGRTREEAIFELSEAFTGGRLEKSISILERLQQGGMHPLAILGGLRNHVRKLLL 358 Query: 264 IHIIKECSNISFEKIIQ--KTEKNIIPMKRNILQES 297 +++ + + + +KN +P + +E Sbjct: 359 ARAVQDQAGRPCDSSLAYPAFQKNYLPQVKKAWEEQ 394 >gi|256850963|ref|ZP_05556352.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 27-2-CHN] gi|260661177|ref|ZP_05862091.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 115-3-CHN] gi|282934122|ref|ZP_06339400.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1] gi|256616025|gb|EEU21213.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 27-2-CHN] gi|260548114|gb|EEX24090.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 115-3-CHN] gi|281301736|gb|EFA94002.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1] Length = 328 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 125/317 (39%), Gaps = 29/317 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN + + + YG D L LI + + F+ + L ++ + + + Sbjct: 7 KNSNVQNKNLLIYGEDAFLNDYLIRDYLASS------DFAGLDLQRVDCENDGLGELLAS 60 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122 + SLFS++KII I+N + KK+ +E++ N+ + I+II++N + Sbjct: 61 LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDIVIIQANYANLD 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + K++ + +A+ P + +I+ + SIS+ +LL Sbjct: 121 KRKKITKLSLSAFNSVAVQFKPYE---ISGIIKAIIKDEGYSISQSTLHLLLERSDQVMD 177 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 + KL ++ IT + V++ + + I EI+++ + AI + L Sbjct: 178 TVLSNYLKLKLIADDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLR 237 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L F + +++ I+ S + ++ I P + + ++ Sbjct: 238 EGQNPVRILAVFENQLEVILSAKILL-ARRRSEMDVGKELG--IHPYRVKLARQ-----T 289 Query: 303 KNLVRETLHKIDHRIHL 319 + + + + I L Sbjct: 290 QASIPKIKKLLLEAIKL 306 >gi|256425476|ref|YP_003126129.1| DNA polymerase III, delta subunit [Chitinophaga pinensis DSM 2588] gi|256040384|gb|ACU63928.1| DNA polymerase III, delta subunit [Chitinophaga pinensis DSM 2588] Length = 331 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 120/303 (39%), Gaps = 13/303 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I ++ N + ++ F+L VL + + ST N +F Sbjct: 16 RPLYWLEGEEDFFIDQVSNYAEHHLLDEAERGFNLTVLYGKDT--DWSTVINACRRYPMF 73 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 +++++++++ + K +L LE + + + + ++ K +I + + K+ ++ +L Sbjct: 74 AERQVVVLKEAQSMKDILK-LEAYVDNPLSSTVFVVAHKQGKIDGRSKMAKLIKEKGVLL 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + DN+ L ++ + ++IS++A +L+ ++G D NE++KL D Sbjct: 133 STKKMYDNQ--LPAWVDAFVSSLGRAISQKAGILLVDHIGNDLSRMANEIEKLLVNLAPD 190 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQK 257 I E ++ + + + E+ NA Q I + + +F A+ K ++ L Sbjct: 191 KKIDENDIEKYVGISKEYNVFELQNALGQKDISKVMRIIGYFAANPKAGPIQMVLPALYN 250 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F + + I + P + R + + + + Sbjct: 251 FFSKMSMVFGVKGGEKEIAAAI-----GVHPFFVKDYVNAARQYGLEGTEKAILLLHAYN 305 Query: 318 HLA 320 + Sbjct: 306 LRS 308 >gi|325498181|gb|EGC96040.1| DNA polymerase III subunit delta [Escherichia fergusonii ECD227] Length = 343 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R+++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRSMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQAQLRQAVQLLTRTEITLKQ 314 >gi|330006016|ref|ZP_08305459.1| DNA polymerase III, delta subunit [Klebsiella sp. MS 92-3] gi|328536008|gb|EGF62418.1| DNA polymerase III, delta subunit [Klebsiella sp. MS 92-3] Length = 326 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 91/257 (35%), Gaps = 20/257 (7%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLF+ ++ ++++ + + L ++ + ++I+ + N L K E Sbjct: 52 QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIV------RGNKLTKAQE 105 Query: 133 KF-------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + +SC L + Q + A Q+L G+ +A Sbjct: 106 NAVWLTALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALA 165 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L++L+ D +T V+ + D ++A + GK + + Sbjct: 166 QALERLAL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGC 224 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 LL ++ LL + ++ ++ + K + +R +L ++L + Sbjct: 225 EPAILLRTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQ 280 Query: 306 VRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 281 LRQAVTLLTRAELTFKQ 297 >gi|262374206|ref|ZP_06067482.1| DNA polymerase III, delta subunit [Acinetobacter junii SH205] gi|262310764|gb|EEY91852.1| DNA polymerase III, delta subunit [Acinetobacter junii SH205] Length = 331 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 132/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K + + + +N + Sbjct: 10 KRVNEARGAWIIHGQEPLLEQNLLDTFRKAWQQQ---EVERQRYDISSVN-DWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIHHNEHNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+ + + YP ++ ++ + + L ++ +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVPLTATYPQDRQRILSIEADKL---GIQLNNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +++ + I + + + D ++ +A + G + ++ + + LA+ P Sbjct: 181 MRVADTFPDIKQIQIEQLYACLQDQSRYTTYDLSDALLTGNLAQSVKIYQYLLAAGEPDS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L ++ +LL ++ FE+ + I K ++ Q++LR N + Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPQNALQLGIWKTKVSLYQQALRRLNPRQFLK 290 Query: 309 ---TLHKIDHRIH 318 L ID I Sbjct: 291 WPELLLAIDAAIK 303 >gi|118443890|ref|YP_878575.1| DNA polymerase III subunit delta [Clostridium novyi NT] gi|118134346|gb|ABK61390.1| conserved hypothetical protein [Clostridium novyi NT] Length = 340 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 108/280 (38%), Gaps = 23/280 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+IF GSD+ I + I++ + + V L+ + + + + N + S Sbjct: 18 NVYIFCGSDEQSIKKAIDKIVDKVVNKDFKELNYVQLDGMTVDND--SIINACETLPFMS 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL--RKIAEKFTSVL- 138 +K++ LI + K +D + + KN+ + I+ +I K++ L I E Sbjct: 76 EKRVTLIYRANFLKDKVDKSMDKVFKNLTKY---IE--DIPKDSILIMYYIFENDREKES 130 Query: 139 -----------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + L + E K+ISK + + + NE Sbjct: 131 LKLKKLDKKAEVVKFSKLKGMALQRKVGEVFKRKNKAISKSDLALFCNIVENNMDIIENE 190 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL Y + ++T + + +I + I +++ Q K ++ + + + Sbjct: 191 VEKLCCYVDDRDIVT-EDITKLISGKNDNDIFNLVDFVSQRKPQKSLDILNELVFKGESV 249 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 +L ++F+L+ I I + + + I ++ + Sbjct: 250 TGILRMIQRQFKLIFDIKINMD-KGKNKDDIARELRLHPF 288 >gi|169350128|ref|ZP_02867066.1| hypothetical protein CLOSPI_00870 [Clostridium spiroforme DSM 1552] gi|169293341|gb|EDS75474.1| hypothetical protein CLOSPI_00870 [Clostridium spiroforme DSM 1552] Length = 338 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 134/337 (39%), Gaps = 29/337 (8%) Query: 1 MATIESHKFIQKSTKNLF-LSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVL 58 M I H F QK N + + + YG + L+ + + KK+ + + FS+ Sbjct: 1 MTIIFIHDFRQKVGYNDDGVMEMIIVIYGEESFLMNQKLESLKKDFACNEENMNFSIYRG 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLS--------TEKKVLDCLEEIIIKNIC 110 + I+ + ++ + F+ KK+++++ + L E+ + N Sbjct: 61 DEDSIEA----VYEDLITPPFFTDKKMVVLKKADFLTTKKIKKDDMALSFFEKCLDNNND 116 Query: 111 NHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI-HLMDLIEESLLIGQKSISK 167 + I ++ + N+ + L K K Y L D + +++ Q +I + Sbjct: 117 DVIFVLYHEGNDFDERKKLVKRLRKEAKFFE---YEKINHYKLSDNVRQAIKRRQATIDE 173 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 +A ++LL+ +G E++KL Y D IT + V ++ + + +A +Q Sbjct: 174 DALELLLSRVGDSLSTVVLEVEKLCLY---DKHITIEGVDKLVSKPLDENVFSLTSAILQ 230 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 + + L+ + +L+ ++ ++ + + ++I + I Sbjct: 231 KDRQKIFSIYKDLMVLNEEPVKLIVLIAGQLRLMYQVKLL-DRKGYNDKEIGKIL--AIN 287 Query: 288 PMKRNILQESLRIWNKNLVRETLH---KIDHRIHLAR 321 P + +++ + ++ + + + L+ K+D I + Sbjct: 288 PYRLKYIRQEGKDFDLDELLKRLNDLAKLDEAIKTGK 324 >gi|317505372|ref|ZP_07963299.1| DNA polymerase III subunit delta [Prevotella salivae DSM 15606] gi|315663514|gb|EFV03254.1| DNA polymerase III subunit delta [Prevotella salivae DSM 15606] Length = 344 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 108/280 (38%), Gaps = 20/280 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +E+ +F ++I G + I ++ + ++ F+ ++ Sbjct: 15 MRDLEARRF-----------SPIYILMGEESYYIDKISDYIATHVLKPEERDFNQNIVFG 63 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 ++ S + + + ++K++++++ K + LE+ + + I+++ K+ Sbjct: 64 ADVTA--SQIVDSAKAYPMMAEKRVVIVKESQNLKG-TEALEKYFKNPVASTILVLCHKN 120 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 I K + A+ + + L IE L Q +I +A Q++ ++G Sbjct: 121 GSIDKRKKIIPSAQ-AGGGVIFESKKLYERELPGFIETYLRQHQVTIEPKAAQMIADHVG 179 Query: 179 GDRIASRNELQKLSSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D +EL KL L + +T + V+ I + E+ NA I IY A ++ Sbjct: 180 ADLNRLTSELDKLLLSRLTTNGRVTPEVVEKEIGVSKDFNAFELRNAIIYRDIYKANLII 239 Query: 238 DFFLASKMPS--HALLHGFLQKFQLLEKIHIIKECSNISF 275 +F + + L F+ L + +N + Sbjct: 240 KYFDNNPKAGSLFSFLPMIFTYFENLMIAYYAPNRNNENA 279 >gi|193214172|ref|YP_001995371.1| DNA polymerase III subunit delta [Chloroherpeton thalassium ATCC 35110] gi|193087649|gb|ACF12924.1| DNA polymerase III, delta subunit [Chloroherpeton thalassium ATCC 35110] Length = 352 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 25/263 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE---INSTS 78 ++ F+G + LI EL+ K + D LN + T + + Sbjct: 21 PIYFFFGREDFLIEELVRIIKAEAFHSAED----SNLNFTLLYGEEQTLGDVVSVASEYP 76 Query: 79 LFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +FS+++++++ + +K E + + + I+++ + ++ K TL K Sbjct: 77 MFSERRLVVVKSFDKLKKDRSREKQKAQTALFTEYLKNPLPSTILVLTTGKLDK-ATLSK 135 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 E F + + S D EE ++S +A +IL+ G E+Q Sbjct: 136 --EPFPLLQSFSYEFDQIQDAGRFAEERAKRYGWTLSPQAIKILVTFAGNSARELDAEIQ 193 Query: 190 KLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA---S 243 KLS + + ++T+ V + + + E+ A + G + A +A L Sbjct: 194 KLSLFADGKSGEKILTDAEVLQTVGLSREYNVFELDKAIVAGDLRMASGIALMILEHEGE 253 Query: 244 KMPSHALLHGFLQKFQLLEKIHI 266 K A+L+ + F L K+ + Sbjct: 254 KTGLFAILNYLIMFFTRLWKLKM 276 >gi|34540701|ref|NP_905180.1| hypothetical protein PG0949 [Porphyromonas gingivalis W83] gi|34397015|gb|AAQ66079.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 335 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 13/246 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I EL + ++ F+ V+L + +++ NE + Sbjct: 18 PLYLLAGEEPFYIDELATLLETHVVPVDEWDFNRVILYGD--KTSVADIANEARRFPMMG 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV---L 138 ++++I++ + ++I + K AEKF V Sbjct: 76 RRQLIVVREAQLVDNIDLLEAHYGTFPDTTILVIAYKKKPDKRKAFYTKAEKFGKVFVSE 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197 I Y + D I + + S+S E +L LG D NEL KL + Sbjct: 136 TIPDY-----KMPDFILSAAAGKKLSVSPEVAYMLADYLGNDLEKLMNELDKLILITQDS 190 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLHGFL 255 ++T + V+ I + E++ A + + +A +F ++ P A L Sbjct: 191 RGVVTSEIVEQHIGVSKSFNNFELLRAIVNRETGKTFRIAHYFARNEKEHPIQATLPVLF 250 Query: 256 QKFQLL 261 F L Sbjct: 251 NYFSNL 256 >gi|260774877|ref|ZP_05883778.1| DNA polymerase III delta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260609132|gb|EEX35290.1| DNA polymerase III delta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 337 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 120/321 (37%), Gaps = 14/321 (4%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 I + + +++ K L H ++ +G++ L+ E +K F A++ Sbjct: 3 IFADRLVEQLNKQL---HPTYLIFGNEPLLLQESRQSIQKAAYTQG---FEERHRFAVDN 56 Query: 64 QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 + + ++ + SLFS +++I +E + L I + I+++ ++ Sbjct: 57 SFDWNLVYDSCQALSLFSSRQLIELELPESGVNAAIAKELVGISEVLHSDIILVVIGTKL 116 Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K K + + ++C + L ++ + EA Q+L G+ Sbjct: 117 TKAQENAKWFKALSSRGCWVNCLTPDLSRLPQFVQSRCRALNLNPDAEAIQMLAQWHEGN 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A L+KL+ D + +++ + + +A + GK A + Sbjct: 177 LFALTQSLEKLAL-LYPDGQLNLIRLEESLSRHNHFTAFHWSDALLAGKANRAQRVLRQL 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 A + + LL ++ L + ++ + + ++ ++ I KR + +L Sbjct: 236 EAEGVEAVILLRTIQKELTQLLS--MQQQMQSQAIGQVFERYR--IWQSKRPLYSAALNR 291 Query: 301 WNKNLVRETLHKIDHRIHLAR 321 ++ + + + I +++ Sbjct: 292 LSQTKITQLIQLIAKAEVISK 312 >gi|168205851|ref|ZP_02631856.1| DNA polymerase III, delta subunit [Clostridium perfringens E str. JGS1987] gi|170662628|gb|EDT15311.1| DNA polymerase III, delta subunit [Clostridium perfringens E str. JGS1987] Length = 348 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S K Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|110799726|ref|YP_696723.1| DNA polymerase III subunit delta [Clostridium perfringens ATCC 13124] gi|110674373|gb|ABG83360.1| DNA polymerase III, delta subunit [Clostridium perfringens ATCC 13124] Length = 348 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S + Sbjct: 20 YILVGLDELLIKEGIENIIYNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|262041268|ref|ZP_06014479.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041384|gb|EEW42444.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 344 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 8/251 (3%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLF+ ++ ++++ + + L ++ + ++I++ N++ K Sbjct: 70 QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIVRGNKLTKAQENAAWLT 129 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + +SC L + Q + A Q+L G+ +A L++L Sbjct: 130 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 189 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + D +T V+ + D ++A + GK + + LL Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ ++ + K + +R +L ++L + +R+ + Sbjct: 249 RTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQLRQAVT 304 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 305 LLTRAELTFKQ 315 >gi|255009389|ref|ZP_05281515.1| hypothetical protein Bfra3_09632 [Bacteroides fragilis 3_1_12] gi|313147146|ref|ZP_07809339.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135913|gb|EFR53273.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 339 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L EK + Sbjct: 79 SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVICHKHGTLDRRKKLAAEVEKA--GV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 + L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPSG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + + R+ L ++R ++ + + +I + Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + +I+ + + I Sbjct: 313 DAKSKGVGNGSISDGDILRELVFKI 337 >gi|18311025|ref|NP_562959.1| DNA polymerase III subunit delta [Clostridium perfringens str. 13] gi|18145707|dbj|BAB81749.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 348 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S K Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCIEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|167855808|ref|ZP_02478561.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755] gi|167853087|gb|EDS24348.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755] Length = 340 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 117/319 (36%), Gaps = 31/319 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVVLNALEIQKNISTFWNEINSTS 78 ++ G D L+ E + + + D F++ ++ ++ + S Sbjct: 19 PFYLLTGQDLLLVGEAKDCIVQTARLQDFDEKQEFTIANDTQWDM------LFDLVQSNG 72 Query: 79 LFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LF ++I+++ L E++ + + + ++ ++ K + + + Sbjct: 73 LFFNRQILILNLPENLTVTQQKQLSELLAFSHTDLLFVLHQPKLTKAMEKQSWFVQLNNA 132 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++C + L ++ Q + +A Q+L + G+ +A + LQ L E Sbjct: 133 VVVNCQTPDITKLPIWLQHRAKTMQLQLEPDAIQLLCYSYEGNLLALKQALQMLQLRFAE 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I VK++I + + ++A ++GKI A+ + ++ LL ++ Sbjct: 193 QK-IGLNRVKEVIEQSAQFTPFQWVDALLEGKINRALRVLQHLQNEEIQPVVLLRIVQKE 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEK-------------NIIPMKRNILQESLRIWNKN 304 LL ++ S + II + + +R Q +++ + Sbjct: 252 LLLLLEM-------TRSPQPIINSHQPLYSGNLRAEFDRLKVWQNRRGFYQAAVQRLTYH 304 Query: 305 LVRETLHKIDHRIHLARKK 323 + + + + +++ Sbjct: 305 KLYQLIQSLAELEKQVKQE 323 >gi|152969243|ref|YP_001334352.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954092|gb|ABR76122.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 344 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 92/257 (35%), Gaps = 20/257 (7%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLF+ ++ ++++ + + L ++ + ++I+ + N L K E Sbjct: 70 QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIV------RGNKLSKAQE 123 Query: 133 KFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + A++ C L + Q + A Q+L G+ +A Sbjct: 124 NAAWLTALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALA 183 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L++L+ D +T V+ + D ++A + GK + + Sbjct: 184 QALERLAL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGC 242 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 LL ++ LL + ++ ++ + K + +R +L ++L + Sbjct: 243 EPAILLRTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQ 298 Query: 306 VRETLHKIDHRIHLARK 322 +R+ + + ++ Sbjct: 299 LRQAVTLLTRAELTFKQ 315 >gi|332097734|gb|EGJ02708.1| DNA polymerase III, delta subunit [Shigella boydii 3594-74] Length = 340 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 98/272 (36%), Gaps = 20/272 (7%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I+ Sbjct: 51 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109 Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + N L K E A++ C + L + + A Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 164 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 Q+L G+ +A L++LS D +T V+ + D ++A + GK Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + + LL ++ LL + ++ ++ + K + + Sbjct: 224 KRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 279 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 R ++ E+L ++ +R+ + + ++ Sbjct: 280 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 311 >gi|238893707|ref|YP_002918441.1| DNA polymerase III subunit delta [Klebsiella pneumoniae NTUH-K2044] gi|238546023|dbj|BAH62374.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 343 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 8/251 (3%) Query: 75 NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + SLF+ ++ ++++ + + L ++ + ++I++ N++ K Sbjct: 69 QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIVRGNKLTKAQENAAWLT 128 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + +SC L + Q + A Q+L G+ +A L++L Sbjct: 129 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 188 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + D +T V+ + D ++A + GK + + LL Sbjct: 189 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 247 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ ++ + K + +R +L ++L + +R+ + Sbjct: 248 RTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQLRQAVT 303 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 304 LLTRAELTFKQ 314 >gi|182623920|ref|ZP_02951708.1| DNA polymerase III, delta subunit [Clostridium perfringens D str. JGS1721] gi|177910813|gb|EDT73167.1| DNA polymerase III, delta subunit [Clostridium perfringens D str. JGS1721] Length = 348 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 99/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S K Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGKIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|270296705|ref|ZP_06202904.1| DNA polymerase III, delta subunit [Bacteroides sp. D20] gi|270272692|gb|EFA18555.1| DNA polymerase III, delta subunit [Bacteroides sp. D20] Length = 339 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 114/326 (34%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ ++ +I+T N + Sbjct: 21 RPVYYLMGEESYYIDLISDYIVDNVLTDTEKEFNLTVVYGADV--DIATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S++++++++ + + + L + K + + I+++ K + + L AE + Sbjct: 79 SERQVVVVKEAQAIRNM-EELSYYLQKPLNSTILVLCHKHGVLDRRKKL--AAEIEKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ I A + +F + P L Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E + I R L ++R ++ + + +I + Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNSSLSDGDILRELVFKI 337 >gi|189465642|ref|ZP_03014427.1| hypothetical protein BACINT_02002 [Bacteroides intestinalis DSM 17393] gi|189437916|gb|EDV06901.1| hypothetical protein BACINT_02002 [Bacteroides intestinalis DSM 17393] Length = 339 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + NI F+L V+ ++ +I+T N + Sbjct: 21 RPVYYLMGEEPYYIDLISDYITDNILTETEKEFNLTVVYGADV--DIATVVNAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 L I + + +A +L +G D EL+KL L Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGIDVEPKATAMLADFVGTDLSRLTGELEKLII-TLPK 194 Query: 199 I--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ + A + +F + K + L Sbjct: 195 GHTRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLL 254 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F + + + ++ L ++R +N + + +I + Sbjct: 255 FGFFSNLMLAYYAPEKSEQGIANMLGLRTP--WQAKDYLA-AMRRYNGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNPSLSDGDILRELVFKI 337 >gi|188585801|ref|YP_001917346.1| DNA polymerase III, delta subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350488|gb|ACB84758.1| DNA polymerase III, delta subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 334 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 123/323 (38%), Gaps = 23/323 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + + K + T D S L+ E N++ + S FS Sbjct: 17 VYLITGESYFQ-KQFGQKIKDLLLKTDFDLSSYEKLDGKEY--NLADVVQKAESLPFFSD 73 Query: 83 KKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++++++ N +K + + +++ ++++ K L K +K + Sbjct: 74 RRLVMVSNAPYFSEQLSEKEKQIFSDYLDNPAPTTVLVFFADKVDKRQKLVKNLKKRGML 133 Query: 138 LAISCYPDNKI---HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 Y +++ + I E + + K I + A +L+ +G + EL+KL Y Sbjct: 134 -----YEFSQLKPWEIDKWIREWVNMRGKDIQRNAVSLLVQRIGNELPLLEQELEKLDLY 188 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 I E HV+ ++ ++ + ++++ + + A+ L P +L Sbjct: 189 TAGIKKIEENHVRQVVPESLETNVFKLVDKIGEKQSGIALALVRKLTL-NEPPVKILFLI 247 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKI 313 ++F+LL KI + ++ + +K I K ++ + + +I Sbjct: 248 ARQFRLLIKIKAYLD-DGLAVSEASKKLGIPPFIGKKVAAQSKNFSYQELQDAVKEVQRI 306 Query: 314 DHRIHLARKKKYLEKNIIFQTIL 336 D+ I K LE + ++ Sbjct: 307 DYAI----KTGQLEGTFALERLI 325 >gi|296876838|ref|ZP_06900886.1| DNA-directed DNA polymerase III delta subunit [Streptococcus parasanguinis ATCC 15912] gi|296432340|gb|EFH18139.1| DNA-directed DNA polymerase III delta subunit [Streptococcus parasanguinis ATCC 15912] Length = 344 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 108/307 (35%), Gaps = 29/307 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G L I D F + + E++ + + S Sbjct: 17 PILVLTGEDVGQFEWLKKDILNKIGYDPSDLNYSYFDMKEASYDEVELD-------LVSL 69 Query: 78 SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +KI+++++L + ++ + D E + + ++I + ++ L Sbjct: 70 PFFADEKIVILDHLLDVTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ + I + + ++ LL G D + Sbjct: 130 VKLLKRDAQI--IEATTPKEQEVKRYFASQAQELGLQFEGDSLDQLLLKSGYDFGELQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + L +Y ED IT + +++++ + I ++ ++ +I A L Sbjct: 188 IALLQAYK-EDGQITLEDIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ I E S +I+ + + P + R + Sbjct: 247 IKLIAILLGQFRMFSQVKIFSE-EGQSESQIVASLSELSGRKVNPYQVKFALRDSRRLSL 305 Query: 304 NLVRETL 310 + +++ + Sbjct: 306 SFLKQAM 312 >gi|289209290|ref|YP_003461356.1| DNA polymerase III subunit delta [Thioalkalivibrio sp. K90mix] gi|288944921|gb|ADC72620.1| DNA polymerase III, delta subunit [Thioalkalivibrio sp. K90mix] Length = 358 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 106/290 (36%), Gaps = 14/290 (4%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 + Q + + F + I SLF+++ ++ + K D L+ + + +++++ Sbjct: 66 DMTAQSDWAPFESAIRDRSLFAERSVLDLRLATGKPGKVGGDHLKTYAAEPQDDLVLLVQ 125 Query: 118 SNEIKKNNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 ++ + + + + P L + L +I++ A +L++ Sbjct: 126 LPRPDRDMRRAAWFKALENRAVVLHARPIPPSQLGPWVRARLQRHGLTITEPALALLVSR 185 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + G+ +A+R E++KL+ I E + + D + + ++G +A+ + Sbjct: 186 IEGNLLAARQEIEKLAL--AGVTEIDEAVLAEATTDAARFELFALAPTALRGDARHALRM 243 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + L P +L ++ +LL + K E + L++ Sbjct: 244 LEGLLDEGQPEPLILWALARECRLLVQAMERKAAGAPDREAFQGSFGDG-----QKALRQ 298 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI-AQTACKN 345 ++ + + + R K E Q +L + A+ A + Sbjct: 299 AMSRLSLPA---ARGLLGEAARVDRVIKGQENGNARQGLLDLVARMAGRR 345 >gi|307261359|ref|ZP_07543034.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869090|gb|EFN00892.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 303 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 15/265 (5%) Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124 + S LF ++II++ + + + E+ + + ++I+ S ++K Sbjct: 26 LFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQ 85 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 +I + I+C L I + I EA Q+L + G+ +A Sbjct: 86 AWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLAL 142 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + LQ L D I+ K+++ + + I+A ++GKI A + + Sbjct: 143 KQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEE 201 Query: 245 MPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESL 298 + LL ++ LLE + N + + + +R Q ++ Sbjct: 202 VQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAV 261 Query: 299 RIWNKNLVRETLHKIDHRIHLARKK 323 + + + + ++ +++ Sbjct: 262 QRLTYKKLYQLIQRLAELEKQVKQE 286 >gi|228473123|ref|ZP_04057880.1| DNA polymerase III, delta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275705|gb|EEK14482.1| DNA polymerase III, delta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 333 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 107/304 (35%), Gaps = 14/304 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + N ++ + F+ ++ +I + T + + + Sbjct: 18 PIYYLAGEEPFFIDLISNYIEQEVLREDEKAFNQQIVYGKDISVD--TIIHYAREYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++I+++ + + L + I+++ K +I L K +K+ + + Sbjct: 76 ARRVIIVKEAQDLSRTISQLLPYVENPSQTTILVLCYKYGKIDGKTKLAKELKKYVCLES 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 Y + ++ L SI A Q+L+ LG D NEL KL + Sbjct: 136 KKLYESET---LKWVDSYLKGFGYSIEPVAAQLLINFLGTDLSRIANELNKLKIILPKGT 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALL-HGFLQK 257 IT H++ I + + E+ NA + A+ + +F + K A++ + Sbjct: 193 KITPLHIEQNIGISKDFNVFELQNALGKKDFAKAMQIIKYFNENQKDNPIAMITENLYRY 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F+ L +++ +++ + + + + + Sbjct: 253 FKNLFIFATNTSKGENELARMMG--VNPYFLKD---YRQAAANYPLKKISFCMETVKNAD 307 Query: 318 HLAR 321 ++ Sbjct: 308 LKSK 311 >gi|159029369|emb|CAO90745.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 327 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 114/310 (36%), Gaps = 19/310 (6%) Query: 25 IFY-GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS-K 82 IFY G D+ I + + + + F+ +N + I + +F Sbjct: 4 IFYWGEDEFAINQAVKNLQAKLLDPNWIQFNYDKINGDRNEAIIEALNQAMT--PVFGMG 61 Query: 83 KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFTS 136 +++ + + + + L+ + N +++ S + K ++ L+ K + Sbjct: 62 NRLVWLADTVICQQCSEDIFKELQRTLPNLSENSYLLLTSAK-KPDSRLKSSKFIQNQAE 120 Query: 137 V---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V I + + + + E ++ +A ++L ++G + EL+KL Sbjct: 121 VKEFELIPPWKVEE--IAQRVREIAKEVGVKLTPDAIELLAESVGNNSRLLWMELEKLRL 178 Query: 194 YCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + I ++ + ++ + ++ +A ++ + A+ L + L A+ Sbjct: 179 FKNNSAGTIDKKDILSLV-NASNQSSLQLASAILKRETGKALELVNELLNRNENPLAITA 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 +F+ + + E EK I + P + +++ ++ ++ + TL Sbjct: 238 TLGGQFRTWAIVKLKIEEGEKD-EKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLATLPI 296 Query: 313 IDHRIHLARK 322 + + ++ Sbjct: 297 LLELEYRLKR 306 >gi|188588435|ref|YP_001920244.1| DNA polymerase III subunit delta [Clostridium botulinum E3 str. Alaska E43] gi|188498716|gb|ACD51852.1| DNA polymerase III, delta subunit [Clostridium botulinum E3 str. Alaska E43] Length = 344 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 113/329 (34%), Gaps = 28/329 (8%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D+ LI + I+ K D +L+ ++ ++ + N + + S K Sbjct: 20 YIFCGLDEELIKDSIDSILKKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA------EK---- 133 K++++ + K D I K+ I+ ++++ L EK Sbjct: 78 KVVIVYRANFLKDKSDEASNKIYKS-----ILKYASDMPPYTILVMYYLFNDKREKPNKN 132 Query: 134 ------FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + C + + I + + +K+I + + + + E Sbjct: 133 KRLNSLDKLIPVVHCDKLRRDSYIKKINDLFKLNKKNIGRIEVMYFAEKVQNNFDIIKRE 192 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + KL SY IT++ + +I + + +++ Q KI A+ + L Sbjct: 193 IDKLISYTNG-REITKKDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQH 251 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 ++ + F L I + + + ++ L + + + Sbjct: 252 MLIISNIQRHFIKLYDIKTGL-RQGKKISTFMSELKLPQFVCEK--LAAQSSKFTEKQLS 308 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 L K+ K L+K + + +L Sbjct: 309 -ELVKLCVNTENNLKSSGLDKTMEMELLL 336 >gi|307250114|ref|ZP_07532076.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857845|gb|EFM89939.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 303 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 15/267 (5%) Query: 68 STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIK 122 + S LF ++II++ + + + E+ + + ++I+ S ++ Sbjct: 24 EALFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAME 83 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K +I + I+C L I + I EA Q+L + G+ + Sbjct: 84 KQAWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLL 140 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A + LQ L D I+ K+++ + + I+A ++GKI A + Sbjct: 141 ALKQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQN 199 Query: 243 SKMPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQE 296 ++ LL ++ LLE + N + + + +R Q Sbjct: 200 EEVQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQA 259 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323 +++ + + + ++ +++ Sbjct: 260 AVQRLTYKKLYQLIQRLAELEKQVKQE 286 >gi|168208745|ref|ZP_02634370.1| DNA polymerase III, delta subunit [Clostridium perfringens B str. ATCC 3626] gi|168215670|ref|ZP_02641295.1| DNA polymerase III, delta subunit [Clostridium perfringens NCTC 8239] gi|170713062|gb|EDT25244.1| DNA polymerase III, delta subunit [Clostridium perfringens B str. ATCC 3626] gi|182382134|gb|EDT79613.1| DNA polymerase III, delta subunit [Clostridium perfringens NCTC 8239] Length = 348 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I G D+ LI E I N+ +L+ L+ + + F N + S K Sbjct: 20 YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129 K++++ + + D E + K N H ++I +K + + L+K Sbjct: 78 KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + EK + ++++ L + K+I K + ++ + E+ Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K+ +Y + IT + + ++ + I +++ + AI L D + Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253 Query: 250 LLHGFLQKFQLLEKIHI 266 +L ++FQ L ++ I Sbjct: 254 ILSQIREQFQKLHRVKI 270 >gi|167040714|ref|YP_001663699.1| DNA polymerase III subunit delta [Thermoanaerobacter sp. X514] gi|300914754|ref|ZP_07132070.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X561] gi|307724012|ref|YP_003903763.1| DNA polymerase III subunit delta [Thermoanaerobacter sp. X513] gi|166854954|gb|ABY93363.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X514] gi|300889689|gb|EFK84835.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X561] gi|307581073|gb|ADN54472.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X513] Length = 338 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 114/302 (37%), Gaps = 22/302 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++FYG ++ L+ + I +FK I + +V+ + ++ + + F Sbjct: 16 HNIYLFYGEERFLLSDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFF 75 Query: 81 SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLR 128 S+ K+++++N + KK+++ +EE ++II +++K Sbjct: 76 SEYKLVVVKNEEDQLSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFY 133 Query: 129 KIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K EK ++ + ++ + E L+ ++G D A NE Sbjct: 134 KFIEKTGKIVYFQKLSFEEAVNYTGYFFKKSGKKISKSDAE---YLVKSVGTDLYAIVNE 190 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + K+ Y + I + +K+++ I +++A K A + L Sbjct: 191 IHKVVCYS-DSEEIKMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVP 249 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 +L +++ +L+ KI E + + I ++ L + + K + Sbjct: 250 LIILSMIVRQMRLIAKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLE 306 Query: 308 ET 309 Sbjct: 307 RA 308 >gi|126640610|ref|YP_001083594.1| putative DNA polymerase III delta subunit [Acinetobacter baumannii ATCC 17978] gi|169634388|ref|YP_001708124.1| DNA polymerase III subunit delta [Acinetobacter baumannii SDF] gi|169797227|ref|YP_001715020.1| DNA polymerase III subunit delta [Acinetobacter baumannii AYE] gi|184156867|ref|YP_001845206.1| DNA polymerase III subunit delta [Acinetobacter baumannii ACICU] gi|213155979|ref|YP_002318024.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB0057] gi|215484668|ref|YP_002326903.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB307-0294] gi|239500749|ref|ZP_04660059.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB900] gi|260556109|ref|ZP_05828328.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ATCC 19606] gi|301346498|ref|ZP_07227239.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB056] gi|301509988|ref|ZP_07235225.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB058] gi|301594197|ref|ZP_07239205.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB059] gi|332851268|ref|ZP_08433341.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013150] gi|332866137|ref|ZP_08436852.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013113] gi|332874057|ref|ZP_08441992.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6014059] gi|126386494|gb|ABO10992.1| putative DNA polymerase III delta subunit [Acinetobacter baumannii ATCC 17978] gi|169150154|emb|CAM88048.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA) [Acinetobacter baumannii AYE] gi|169153180|emb|CAP02270.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA) [Acinetobacter baumannii] gi|183208461|gb|ACC55859.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ACICU] gi|213055139|gb|ACJ40041.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB0057] gi|213985817|gb|ACJ56116.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB307-0294] gi|260410164|gb|EEX03463.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ATCC 19606] gi|323516632|gb|ADX91013.1| DNA polymerase III, delta subunit [Acinetobacter baumannii TCDC-AB0715] gi|332730148|gb|EGJ61475.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013150] gi|332734778|gb|EGJ65872.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013113] gi|332737798|gb|EGJ68690.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6014059] Length = 329 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ E L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + + S P Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIGSGEPES 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L +ID I Sbjct: 291 WSALLLQIDAAIK 303 >gi|238791644|ref|ZP_04635282.1| DNA polymerase III subunit delta [Yersinia intermedia ATCC 29909] gi|238729260|gb|EEQ20776.1| DNA polymerase III subunit delta [Yersinia intermedia ATCC 29909] Length = 322 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 119/307 (38%), Gaps = 15/307 (4%) Query: 28 GSDKGLIFELINQFKK-NISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86 G++ L+ E + ++ I + + FS L+A +I + + SLF+ ++ + Sbjct: 3 GNEPLLLQESQDHIRRVAIEHDFTEHFSFA-LDAHTEWDSIFSL---CQALSLFASRQTL 58 Query: 87 LIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143 + + + + L ++ + ++I+++N++ K + ++ + +SC Sbjct: 59 TLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWFKALGSNGVFVSCQ 118 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + L + A Q+L G+ +A L++LS D +T Sbjct: 119 TPEQAQLPRWVSTRAKSLNLEADDPAIQLLCYCYEGNLLALSQALERLSL-LYPDGKLTL 177 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+ + D ++A I GK A + + LL ++ LL Sbjct: 178 PKVEQAVNDAAHFTPYHWLDALIAGKSKRAWHILQQLQQEESEPIILLRTLQRELLLLLT 237 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + + + + + + + +R ++ ++L+ + +++ +H + R K Sbjct: 238 LKRRM--NQVPLRTLFDQLK--VWQNRRPMMTQALQRLSLPQLQQAVHLLAQI--EVRLK 291 Query: 324 KYLEKNI 330 + ++I Sbjct: 292 QDYGQSI 298 >gi|322389147|ref|ZP_08062709.1| DNA-directed DNA polymerase III delta subunit [Streptococcus parasanguinis ATCC 903] gi|321144157|gb|EFX39573.1| DNA-directed DNA polymerase III delta subunit [Streptococcus parasanguinis ATCC 903] Length = 344 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 109/307 (35%), Gaps = 29/307 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G L K I D F + + E++ + + S Sbjct: 17 PILVLTGEDVGQFEWLKKDILKKIGYDPSDLNYSYFDMKEASYAEVELD-------LVSL 69 Query: 78 SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +KI+++++L + ++ + D E + + ++I + ++ L Sbjct: 70 PFFADEKIVILDHLLDLTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ + I + L ++ LL G D + Sbjct: 130 VKLLKRDAQI--IEATTPKEQDLKRYFSGQAQELGLHFVGDSLDQLLLKSGYDFGELQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L +Y ED IT Q +++++ + I ++ ++ +I A L Sbjct: 188 LALLQAYK-EDGQITLQDIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ I E S +I+ + + P + R + Sbjct: 247 IKLIAILLGQFRMFSQVKIFSE-EGQSESQIVASLSDLSGRKVNPYQVKFALRDSRRLSL 305 Query: 304 NLVRETL 310 + +++ + Sbjct: 306 SFLKQAM 312 >gi|260549057|ref|ZP_05823278.1| DNA polymerase III subunit delta [Acinetobacter sp. RUH2624] gi|260407785|gb|EEX01257.1| DNA polymerase III subunit delta [Acinetobacter sp. RUH2624] Length = 329 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ E L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + + S P Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIGSGEPES 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L +ID I Sbjct: 291 WSALLLQIDAAIK 303 >gi|320175118|gb|EFW50230.1| DNA polymerase III delta subunit [Shigella dysenteriae CDC 74-1112] gi|320185383|gb|EFW60153.1| DNA polymerase III delta subunit [Shigella flexneri CDC 796-83] Length = 343 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 98/266 (36%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK + + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRTLHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|307245738|ref|ZP_07527824.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254709|ref|ZP_07536537.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259151|ref|ZP_07540881.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853440|gb|EFM85659.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862382|gb|EFM94348.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866818|gb|EFM98676.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 303 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 15/265 (5%) Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124 + S LF ++II++ + + + E+ + + ++I+ S ++K Sbjct: 26 LFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQ 85 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 +I + I+C L I + I EA Q+L + G+ +A Sbjct: 86 AWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLAL 142 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + LQ L D I+ K+++ + + I+A ++GKI A + + Sbjct: 143 KQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEE 201 Query: 245 MPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESL 298 + LL ++ LLE + N + + + +R Q ++ Sbjct: 202 VQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAV 261 Query: 299 RIWNKNLVRETLHKIDHRIHLARKK 323 + + + + ++ +++ Sbjct: 262 QRLTYKKLYQLIQRLAELEKQVKQE 286 >gi|324114761|gb|EGC08729.1| DNA polymerase III [Escherichia fergusonii B253] Length = 343 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQAQLRQAVQLLTRTEITLKQ 314 >gi|251780473|ref|ZP_04823393.1| DNA polymerase III, delta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084788|gb|EES50678.1| DNA polymerase III, delta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 116/324 (35%), Gaps = 18/324 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D+ LI + I+ K D +L+ ++ ++ + N + + S K Sbjct: 20 YIFCGLDEELIKDSIDSILKKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77 Query: 84 KIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAE 132 K++++ ++ K L+ +I+ + +++ +K N +++ Sbjct: 78 KVVIVYRANFLKDKSDEASNKIYKSILKYASDMPPYTILIMYYLFNDKREKPNKNKRLNS 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + C + + I + + +K+I + + + + E+ KL Sbjct: 138 LDKLIPVVHCDKLRRDSYIKKINDLFKLNKKNIGRIEVMYFAEKVQNNFDIIKREIDKLI 197 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 SY IT++ + +I + + +++ Q KI A+ + L ++ Sbjct: 198 SYTNG-REITKKDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQHMLIIS 256 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + F L I + + + ++ L + + + L K Sbjct: 257 NIQRHFIKLYDIKTGL-RQGKKISTFMSELKLPQFICEK--LAAQSSKFTEKQLS-ELVK 312 Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336 + K L+K + + +L Sbjct: 313 LCVNTENNLKSSGLDKTMEMELLL 336 >gi|199598191|ref|ZP_03211613.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus HN001] gi|229552128|ref|ZP_04440853.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus rhamnosus LMS2-1] gi|258508331|ref|YP_003171082.1| DNA polymerase III delta subunit [Lactobacillus rhamnosus GG] gi|258539541|ref|YP_003174040.1| DNA polymerase III subunit delta [Lactobacillus rhamnosus Lc 705] gi|199590952|gb|EDY99036.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus HN001] gi|229314561|gb|EEN80534.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus rhamnosus LMS2-1] gi|257148258|emb|CAR87231.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus GG] gi|257151217|emb|CAR90189.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus Lc 705] gi|259649647|dbj|BAI41809.1| DNA polymerase III delta subunit [Lactobacillus rhamnosus GG] Length = 353 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 102/280 (36%), Gaps = 17/280 (6%) Query: 68 STFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKS 118 ++ S F + + ++I++ L+ EK L L+ + + ++++ + Sbjct: 60 GVALDDATSIPFFGEYREVVIDDPYFLTGEKSTDKIEHDLTGLQAYFDNPVPSTMMVLIA 119 Query: 119 N--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 ++ + L K +K ++ + ++ + + Q I A L+ Sbjct: 120 PYKKLDERKRLTKALKKAALIVDAAPL--DERSARMALAQIFKQHQVDIQPPALDALVQR 177 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G E++KL +Y + +T V ++ + +++ ++ +A+ L Sbjct: 178 TNGQYSVMMGEVRKLLTYASDGSPLTVAAVSALVPKQLNDRVFDLVTDVLRQNAADALAL 237 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LA + L L +F+LL ++ ++ + I + P + + Sbjct: 238 YRDLLAQREEPIRLNALMLGQFRLLIQVKLLAQ-KGYGQGDIAATLKA--HPYRVKLALR 294 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + + + + A K ++K + F+ + Sbjct: 295 QVGRLPYHQLAQAYSGLVDTE-TAMKTGTIDKALAFELFM 333 >gi|77359975|ref|YP_339550.1| DNA polymerase III subunit delta [Pseudoalteromonas haloplanktis TAC125] gi|76874886|emb|CAI86107.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudoalteromonas haloplanktis TAC125] Length = 345 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 124/299 (41%), Gaps = 16/299 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + + + Q + D ++ + Q+ I+ + S SLF Sbjct: 18 PFYLVFGEEPFQEAQCVQQIRAIAKEQGFDEVIKFTLMQGFDWQEIIAQY----QSMSLF 73 Query: 81 SKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 S + II + +L+ +K + + ++II + I+IIK + ++ + Sbjct: 74 SARTIIEL-DLNQQKPGIIGSNTFKKIIELINPDTILIIKGAKASQDVQRSAWFKALDKH 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 L + CYP H+ ++E ++ EAK L++ G+ +A EL+KLS Sbjct: 133 GLFVPCYPLTGTHVKRWLDEQCQRLSLNMQNEAKLSLISATEGNLLACFQELEKLSL-LH 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + LIT+Q V + + I ++ +A + G+ AI + + + ++L + Sbjct: 192 ANALITQQLVMQGLLNQAKFDIFDLSDALLNGQAKQAIKVLNKLASDNTEVVSILWAITK 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-LQESLRIWNKNLVRETLHKID 314 + L I + ++ E I ++ I + +Q ++ + + + + ++ Sbjct: 252 ELNTL----IDVQIGLLNGEPIANLFKQKAIWKNQQAPVQSAINRLSIHTLEQISSELA 306 >gi|88811890|ref|ZP_01127143.1| DNA polymerase III subunit delta [Nitrococcus mobilis Nb-231] gi|88790774|gb|EAR21888.1| DNA polymerase III subunit delta [Nitrococcus mobilis Nb-231] Length = 340 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 98/294 (33%), Gaps = 13/294 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA I + + + L V++ G + LI E + + + L+A Sbjct: 1 MAKIRIDELERHLSGRLA---PVWLVAGEEPLLIDEAGAGIRAAARTAGYSERQV--LHA 55 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + + SLFS++++I + L+ + ++++ S Sbjct: 56 ETDGFDWRQLGAAAGNLSLFSERRLIELRLPGGKPGAGGAQALQAYCRAPPADTLLLVAS 115 Query: 119 NEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + E + + + +P + L I + L + ++L Sbjct: 116 ARLDARQRRGAWVEALSRAGVMLYIWPVGRRDLPRWIMQRLHSRGLIADRMVVELLAERA 175 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A+ E++KL L + + + D+ + ++ A + G + Sbjct: 176 EGNLLAAAQEVEKLYL-LLGAGQVDLAAARRAVVDSARYDVFDLSEAVLGGGCTRVARIC 234 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 +L ++ ++L + + + +I + ++ IP R Sbjct: 235 RGLQEEGTEPTLVLWALARELRVLATLSALAGDAR----RINELFRQHRIPKHR 284 >gi|116620840|ref|YP_822996.1| DNA polymerase III subunit delta [Candidatus Solibacter usitatus Ellin6076] gi|116224002|gb|ABJ82711.1| DNA polymerase III, delta subunit [Candidatus Solibacter usitatus Ellin6076] Length = 352 Score = 77.3 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 40/342 (11%), Positives = 102/342 (29%), Gaps = 42/342 (12%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G + + + + L + EI + + SLF+ ++ Sbjct: 20 LLLGPEAYERRRIKDALLAGVPEGSVTQHDLSEVTVAEILDD-------ARALSLFASER 72 Query: 85 IILIENL--------------------STEKKVLDCLEEIIIKNICNHIIIIKS------ 118 +I + N L + +I ++ Sbjct: 73 LIWVVNAELALPRGRAAASDDESDNDAPAAAGDAAPLVSYMKDPTPGVTLIFEAIRYDFE 132 Query: 119 -NEIKKNNTLRKIAEKFTSVLAISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + +K + +RK V+ + Y D + L+ + A +L+ Sbjct: 133 GEDKRKQDRVRKFYAAIPDVVELHKYSVQDARAEAESLVRH----AGFRMDPAALDLLIE 188 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 LG D E++KLS + + +I + +++ D I ++NA + ++ Sbjct: 189 ALGADIARVAVEVEKLSLFA-GNRVIGVDDITELVPDARATTIFALVNALGRRDRARSLA 247 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + D L +F++ ++ + K + + + Sbjct: 248 ILDTLTREGEYLPLALAFLSSQFRMALVAREAGLKNSSQIQGHFSKLGIPMWGSRAEQVY 307 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 +++ + + + I R + I+ +T + Sbjct: 308 QTVSKFTPPQMERAIKLIYKADKGLR-DARPDDRIVMETFIT 348 >gi|320105920|ref|YP_004181510.1| DNA polymerase III subunit delta [Terriglobus saanensis SP1PR4] gi|319924441|gb|ADV81516.1| DNA polymerase III, delta subunit [Terriglobus saanensis SP1PR4] Length = 392 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 46/353 (13%), Positives = 116/353 (32%), Gaps = 38/353 (10%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQ-FKKNISITYHDPFSLVVLNALEIQ 64 S +F+ + ++ G + L +E + + + F L L+ E Sbjct: 12 SDRFLAEIAS--PALRPGYVLAGDELFL-YERCRRGVLQTLVPDNLRDFCLHDLDLAETS 68 Query: 65 KNISTFWNEINSTSLFSKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKS 118 + ++ + SL + ++ NL +K ++ ++I + Sbjct: 69 IFEA--LDQAQTPSLMAPFQVFFFRNLKVLYTRGAKKDEFAAIDAYFRSPNPQALLIFVA 126 Query: 119 NEIKKNNTLRKI-------AEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSIS 166 + ++ LRK+ E+ L C ++ + + + Sbjct: 127 DHLRLPADLRKMDMQDKDRFERIRETLGDLCGVVELARVDEQDAVRWVTATCDEQNTKCD 186 Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYC----------LEDILITEQHVKDIICDTHVL 216 +A + L+ LG D + +EL+KL Y + IT V+ ++ Sbjct: 187 PDAARELVDALGADMMLVASELEKLLLYVSAPREQAGVEHAEARITLGDVETLVLAAKQR 246 Query: 217 YIEEIINATIQGKIYNAIMLADFFLA----SKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 + E+ +A A+ L L + + L+ + F+ + I + Sbjct: 247 SLYELTDAISLHDRAAALGLLHGLLNASDGGEDSAIGHLYMLARTFRQMLIIAEKNVRDS 306 Query: 273 ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + +++ + + ++++++ R ++ + L I R Sbjct: 307 RAIWQVLWQGFRMPPFAADDLIRQARRYKSRRELSRALRLIARADLELRNSPP 359 >gi|124026820|ref|YP_001015935.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. NATL1A] gi|123961888|gb|ABM76671.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. NATL1A] Length = 342 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G+D I + ++ + F+ L+ + ++N E S L S Sbjct: 2 PIHLIWGNDYEACNREIEELINSVIDSSWKSFNYSHLDGNDPKQN-LRALEEAQSAPLGS 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +I+L+ L + + H+I+ SN+ K K+ EK Sbjct: 61 GGRIVLVRRSPFCNGCSIELSNKLEQVIKLIPDKTHLILSNSNKPDKRLKTTKLIEKSIQ 120 Query: 137 VLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 I P + +L++ L ++ E +++ ++G D ELQ Sbjct: 121 SNTLSQEKSFILPLPWDINGQRNLVKNILQQLNLKMNYETIDLIVESIGNDSSLINTELQ 180 Query: 190 KLSSYCL---------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 KLS + + I+++ VK +I + + EI N+ ++G+I A+ Sbjct: 181 KLSLFSEAVNTNLTTDKPREISKELVKKLIQNNSTNAL-EIANSLLKGEIIIALNKIQSL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQE 296 L + P+ L+ + + +H++ N ++I + + K I +++ I + Sbjct: 240 LKNGEPALRLITTLTGQSRGWLWVHLLDSQGNQDVKEIAKLSGIANPKRIFVIRKQIQGK 299 Query: 297 SLR 299 SL Sbjct: 300 SLE 302 >gi|124265409|ref|YP_001019413.1| DNA polymerase III subunit delta [Methylibium petroleiphilum PM1] gi|124258184|gb|ABM93178.1| DNA polymerase III, delta subunit [Methylibium petroleiphilum PM1] Length = 363 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 37/317 (11%), Positives = 103/317 (32%), Gaps = 17/317 (5%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 I+ + K L ++ +G + L E + + H + + Sbjct: 2 QIKPDQLDAHLKKGL---RPLYTLHGDEPLLALEASDAIRAAARDAGHTEREVHHVAGAH 58 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + S+ +S SLF++ KI+ I + K L+ + ++ Sbjct: 59 F--DWSSLLGAASSMSLFAEAKIVEIRIPSGKPGKDGSQALQHYCEHLPEGVVTLVTLPR 116 Query: 121 IKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILL 174 + + + S + + P + L I + L + ++ + Sbjct: 117 LDRQQSGSAWFGALESAGVTLRLDPVERQALPQWIAQRLAAQNQRVAADEEGQRTLAFFA 176 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 + G+ +A++ EL KL ++ + V+ + + + ++ A + G++ + Sbjct: 177 DRVEGNLLAAQQELTKLGL-LYPAGELSFEQVEAAVLNVARYSVFKLGEAVLAGQVSRVL 235 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 + D A + + + + L + + +++ I +K + Sbjct: 236 RMLDGLRAEGEAAVLVHWTLAEDIRALRRCKDAV-AAGKPLPMALRENR--IWGLKERLF 292 Query: 295 QESLRIWNKNLVRETLH 311 + +L + + Sbjct: 293 ERALPRLGDGTIDHLIE 309 >gi|319902128|ref|YP_004161856.1| DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108] gi|319417159|gb|ADV44270.1| DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108] Length = 339 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 113/326 (34%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ ++ +I+T N + Sbjct: 21 RPVYYLMGEEAYYIDLIADYIADNVLTDTEKEFNLSVVYGADV--DIATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + D L + K + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQSIRNM-DELSYYLQKPLNSTILVICHKHGVLDRRKKL--AAEIEKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPAFITAYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 IT + ++ I + E+ A ++ + A + +F + P L Sbjct: 196 QTRITPEQIERNIGISKDYNNFELRGAIVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E S + R L ++R ++ + + +I + Sbjct: 256 GFFSNLMLAYYAPEKSEQGIANFLGLKSP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNSSLNDGDILRELVFKI 337 >gi|323344174|ref|ZP_08084400.1| hypothetical protein HMPREF0663_10936 [Prevotella oralis ATCC 33269] gi|323094903|gb|EFZ37478.1| hypothetical protein HMPREF0663_10936 [Prevotella oralis ATCC 33269] Length = 344 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 104/259 (40%), Gaps = 10/259 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + I ++ + +N+ F+ ++ ++ N + + + S Sbjct: 26 PIYILMGEEAYFIDKISDYIAENVLQPEERDFNQNIVFGSDV--NAAQVADLAKGYPMMS 83 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++++++ + + LE+ + K + + I+++ K+ I + L AE + Sbjct: 84 EYRVVIVKEAQNIRA-AEPLEKYLEKPVMSTILVLCHKNGSIDRRKKLVSKAEVA--GVV 140 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198 L IE LL + +I ++ ++ ++G D +EL KL S D Sbjct: 141 FESKKKRDYELPGFIEGYLLKHKVAIDNKSASMIADHIGSDLGRLTSELDKLQISLPEND 200 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 +T + V++ I + E+ NA + I+ A + ++F + A L Sbjct: 201 RRVTPEIVEERIGVSKDFNAFELRNAIVNRDIFKANQIINYFDRNPKAGSIFAFLPLLFN 260 Query: 257 KFQLLEKIHIIKECSNISF 275 FQ L + +N + Sbjct: 261 YFQNLMLSYYAPNRNNENS 279 >gi|323527342|ref|YP_004229495.1| DNA polymerase III subunit delta [Burkholderia sp. CCGE1001] gi|323384344|gb|ADX56435.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1001] Length = 372 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 103/286 (36%), Gaps = 15/286 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKALAGSVNDDVVTMITLPRLDAATQKSAWFTALADAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + + D + + + ++ A + G + + D + +L Sbjct: 195 LYPAGALSFEQIHDAVLNVARYDVFKLNEAMLAGDVGRLSRMIDGLKGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +++ + L +I + ++++ + + ++ +L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSR 297 >gi|319791141|ref|YP_004152781.1| DNA polymerase iii, delta subunit [Variovorax paradoxus EPS] gi|315593604|gb|ADU34670.1| DNA polymerase III, delta subunit [Variovorax paradoxus EPS] Length = 357 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 18/301 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + L E + + + S + + S S SLF+ Sbjct: 18 PLYTIHGDEPLLAQEAADAIRAAAREQGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFA 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTS 136 K+I+ I + K L+++ N + ++ + K + Sbjct: 76 DKQIVEIRIPSGKPGKDGSTALQQLAEAAPGNDSTLTLVMLPRLDKATRTGAWFSALENN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKL 191 ++I P + L I + L + + Q + G+ +A+ E+QKL Sbjct: 136 GVSIQVDPVERNVLPQWIAQRLGQQGQRVMPGDEGQRTLQFFADRVEGNLLAAHQEIQKL 195 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + ++ + V+ + + + ++ A + G + D A + Sbjct: 196 AL-LHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRVARMLDGLQAEGEAEVLVH 254 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNKNLVRETL 310 + + + L+++ +N I + + L + ++ L Sbjct: 255 YTIAEDIRALKRVKDAMAAGRPLPM----ALRENRIWGPRERAFERVLPRLDDRMLARLL 310 Query: 311 H 311 Sbjct: 311 R 311 >gi|297205845|ref|ZP_06923240.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus jensenii JV-V16] gi|297148971|gb|EFH29269.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus jensenii JV-V16] Length = 328 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 126/317 (39%), Gaps = 29/317 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN + + + YG D L LI + + F+ + L ++ + + + Sbjct: 7 KNSNVQNKNLLIYGEDAFLNDYLIRDYLASS------DFAGLDLQRVDCENDGLGELLAS 60 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122 + SLFS++KII I+N + KK+ +E++ N+ + ++II++N + Sbjct: 61 LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDVVIIQANYANLD 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + K++ + +A+ P + +I+ + SIS+ +LL Sbjct: 121 KRKKITKLSLSAFNSVAVQFKPYE---VSGIIKSIIKDEGYSISQSTLHLLLERSDQVMD 177 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 + + KL ++ IT + V++ + + I EI+++ + AI + L Sbjct: 178 TALSNYLKLKLISDDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLR 237 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 +L F + +++ I+ S + ++ I P + + ++ Sbjct: 238 EGQNPVRILAVFENQLEVILSAKILL-ARRRSEMDVGKELG--IHPYRVKLARQ-----T 289 Query: 303 KNLVRETLHKIDHRIHL 319 + + + + I L Sbjct: 290 QASIPKIKKLLLEAIKL 306 >gi|167037814|ref|YP_001665392.1| DNA polymerase III subunit delta [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116232|ref|YP_004186391.1| DNA polymerase III subunit delta [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856648|gb|ABY95056.1| DNA polymerase III, delta subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929323|gb|ADV80008.1| DNA polymerase III, delta subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 338 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 22/302 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H +++FYG ++ L+ + I +FK I + +V+ + ++ + + F Sbjct: 16 HNIYLFYGEERFLLSDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFF 75 Query: 81 SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLR 128 S+ K+++++N + KK+++ +EE ++II +++K Sbjct: 76 SEYKLVVVKNEEDQLSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFY 133 Query: 129 KIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K EK ++ + ++ + E + ++G D A NE Sbjct: 134 KFIEKTGKIVYFQKLSFEEAVNYTGYFFKKSGKKISKSDAE---YFVKSVGTDLYAIVNE 190 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + K+ Y + I + +K+++ I +++A K A + L Sbjct: 191 IHKVVCYS-DSEEIKMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVP 249 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 +L +++ +L+ KI E + + I ++ L + + K + Sbjct: 250 LIILSMIVRQMRLIAKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLE 306 Query: 308 ET 309 Sbjct: 307 RA 308 >gi|160889584|ref|ZP_02070587.1| hypothetical protein BACUNI_02010 [Bacteroides uniformis ATCC 8492] gi|317480074|ref|ZP_07939185.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156861101|gb|EDO54532.1| hypothetical protein BACUNI_02010 [Bacteroides uniformis ATCC 8492] gi|316903751|gb|EFV25594.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 339 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 114/326 (34%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ ++ +I+T N + Sbjct: 21 RPVYYLMGEESYYIDLISDYIVDNVLTDTEKVFNLTVVYGADV--DIATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S++++++++ + + + L + K + + I+++ K + + L AE + Sbjct: 79 SERQVVVVKEAQAIRNM-EELSYYLQKPLNSTILVLCHKHGVLDRRKKL--AAEIEKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ I A + +F + P L Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E + I R L ++R ++ + + +I + Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNSSLSDGDILRELVFKI 337 >gi|61679660|pdb|1XXH|A Chain A, Atpgs Bound E. Coli Clamp Loader Complex gi|61679665|pdb|1XXH|F Chain F, Atpgs Bound E. Coli Clamp Loader Complex Length = 343 Score = 76.9 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 97/266 (36%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAXSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLXGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGXXGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314 >gi|167754460|ref|ZP_02426587.1| hypothetical protein ALIPUT_02756 [Alistipes putredinis DSM 17216] gi|167659085|gb|EDS03215.1| hypothetical protein ALIPUT_02756 [Alistipes putredinis DSM 17216] Length = 356 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 10/252 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I L + I F+ L + N + Sbjct: 29 PVYLLMGEEAFFIDALCDLLASTILQESERAFN--QLTVYGRDSDAGQVVNLCRQMPMMG 86 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++ + + + LD L K I+I+ K + K + L K Sbjct: 87 SYQVVILKE-AQQLRGLDKLSLYTSKPSPTTILIVCHKEKNVDKRSQLYKSI--AQHGAV 143 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198 + + + + + +I +A+ +L +LG D NEL KL Sbjct: 144 LESVRPRDYEIGPWLAQFVASKGCTIDAKAQAMLTDHLGTDLAKISNELGKLLLSLPEGT 203 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT+ H++ I + E+ A + A+ +AD F + P + Sbjct: 204 KKITDAHIEQNIGISKDFNNFELCKAVTGQNLEQALRIADHFARNPKDNPLLVTILALFN 263 Query: 257 KFQLLEKIHIIK 268 +F+ + +I+ ++ Sbjct: 264 QFREIFRINYLR 275 >gi|148238418|ref|YP_001223805.1| DNA polymerase III subunit delta [Synechococcus sp. WH 7803] gi|147846957|emb|CAK22508.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 7803] Length = 326 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 44/323 (13%), Positives = 107/323 (33%), Gaps = 20/323 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D + I + +L L+ + + E + S Sbjct: 2 PIQLLWGDDSAALERAIQAVIDSALDPAWASVNLSRLDGSDSGQARQAL-EEARTPPFGS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 +++L++ ++ D E I + +++ + K + LR V Sbjct: 61 GARVVLLQRSPFCNGCPSELADRFEASIDTIPDSTELLLCNPN-KPDGRLRTTKALQKRV 119 Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 A + D L+E + + S+ +A L+ +G D EL Sbjct: 120 KAGQAKELSFKLPAVWDGAGQ-RQLVERTASELKLSLEPKAVDALIDAIGSDSARLSMEL 178 Query: 189 QKLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 QKL+ + I+ V+ +I ++ + +A + G AI L D L P Sbjct: 179 QKLALHAESTGSPHISATAVQSLIDGLSTNALQ-VGDALLAGDPGEAIALLDALLDGGEP 237 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + ++ + + + ++++ I + P + ++++ L+ + Sbjct: 238 ALRIVATLTGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPERC 296 Query: 307 RETLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 297 LNLLGRLLDVEAALKRGAQPGDA 319 >gi|262280961|ref|ZP_06058744.1| DNA polymerase III subunit delta [Acinetobacter calcoaceticus RUH2202] gi|262257861|gb|EEY76596.1| DNA polymerase III subunit delta [Acinetobacter calcoaceticus RUH2202] Length = 329 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 133/308 (43%), Gaps = 28/308 (9%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + +I +G + L L++ F+K+ + + + +N +NS SL Sbjct: 15 ARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNALNSLSL 70 Query: 80 FSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKF 134 FS++ I + N+ + L L+ I N N ++I+ S+ +K + ++ E Sbjct: 71 FSQQLAIEVHGNIKPDANGLKQLKSYIQNNEHNLLLIVLPKQDSSSLK--SAFFQVVEAN 128 Query: 135 TSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V+A+ + YP ++ ++++ E L + + +A Q L+ + + +A++N L ++ Sbjct: 129 GVVVALTANYPQDRQRILNVEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSLMRVRD 185 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + LI + + + D ++ +A ++G + +I + + +A+ P +L Sbjct: 186 TFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLGQSIKIFQYLIAAGEPDSLILWT 245 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV---RETL 310 ++ +LL ++ FE+ + I K + Q++LR N L Sbjct: 246 LSKEMRLLMQL----------FEQPHNALQLGIWKTKVGLYQQALRRLNPQQFLGWSTLL 295 Query: 311 HKIDHRIH 318 +ID I Sbjct: 296 LQIDAAIK 303 >gi|51595448|ref|YP_069639.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis IP 32953] gi|186894479|ref|YP_001871591.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis PB1/+] gi|51588730|emb|CAH20341.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis IP 32953] gi|186697505|gb|ACC88134.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis PB1/+] Length = 344 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 103/273 (37%), Gaps = 12/273 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLN 59 M I + + + + L + + G++ L+ E + ++ + + FS L+ Sbjct: 1 MIRIYPEQLVAQLHEGLRACY---LLCGNEPLLLQESQDHIRRVASQHDFTEHFSFA-LD 56 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117 A ++I + + SLF+ ++ +L+ + + + L ++ + ++I++ Sbjct: 57 AHTEWEHIFSL---CQALSLFASRQTLLLSFPDSGLTAPISEQLVKLSSLLHPDILLILR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 +N++ K + + + +SC + L + ++ A Q+L Sbjct: 114 ANKLTKAQENSAWFKALSKNGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A + Sbjct: 174 YEGNLLALSQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 LL ++ LL + E Sbjct: 233 LQQLQQEDSEPVILLRTVQRELLLLLALKRQME 265 >gi|332653430|ref|ZP_08419175.1| DNA polymerase III, delta subunit [Ruminococcaceae bacterium D16] gi|332518576|gb|EGJ48179.1| DNA polymerase III, delta subunit [Ruminococcaceae bacterium D16] Length = 353 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 27/257 (10%), Positives = 90/257 (35%), Gaps = 12/257 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ +G + L + + ++ + + F+ + A ++ I+ + ++ Sbjct: 27 LYLLHGEETYLRDYYLGRLREKVLAGGLEEFNFHPIAAKDMS--PHALEEAIDCLPMMAE 84 Query: 83 KKIILIENLSTEKKVLDCLEEI--IIKNICNHIIIIKSNEI-----KKNNTLRKIAEKFT 135 + ++ + + K E ++ + +++ ++ ++ + ++ Sbjct: 85 RTLVQVTDFDLFKAGEKDREAYGKLLSQLPDYVCLVFVFDLVPFKMDARTKFSAVIKQAG 144 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 +V+ ++ L+D + K I + L+ G E++K+ +Y Sbjct: 145 TVVNFV--RQDQGDLVDWVRRRFRALGKDIDSKLALDLIFLCGDLMTNLIGEIEKIGAYA 202 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT Q + + + + +A +GK A + + P ++ Sbjct: 203 KGV-HITRQDIDAVATPQLDAVVFRMTDAIGEGKFDQAASVLGELYQMQEPPIKIMWSLG 261 Query: 256 QKFQLLEKIHIIKECSN 272 ++ + L + E Sbjct: 262 RQMRQLYSARLALEQGR 278 >gi|299139534|ref|ZP_07032708.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX8] gi|298598462|gb|EFI54626.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX8] Length = 383 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 44/366 (12%), Positives = 126/366 (34%), Gaps = 32/366 (8%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + +F+ + + + +V + G + L + + F L L+ E Sbjct: 14 AERFVAEISGDARRPGYVLL--GDESFLYEICRRGVLQALVPGELREFCLHDLDLGETSI 71 Query: 66 NISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + + + SL + +++ + N +K+ ++E + +++ ++ Sbjct: 72 FEA--LDLAQTPSLMAPFQVLFLRNIQKLYGRGQKKEEFAAIDEYFRRPNPQALLVFVAD 129 Query: 120 EIKKNNTLRKI-------AEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISK 167 I LRK+ AE+ L +C ++ + + + Sbjct: 130 HISLPQDLRKMDMQDKERAERIRETLGDACGVVELQRVSEDDAVLWVMRESEAKGVRFHE 189 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ITEQHVKDIICDTHVLYIEEI 221 +A + L+ LG + + ++EL+KL Y I V+ ++ + E+ Sbjct: 190 DAARELVDALGAEMLTIKSELEKLMLYAGARGEAAGDAGIDVADVETMVAAAKQRSLYEL 249 Query: 222 INATIQGKIYNAIMLADFFL----ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 +A A+ L L + + + + F+ + ++ + + + Sbjct: 250 TDAISLKDAPRALALLHGLLNASDGGEDAAIGHIFTLAKTFRQMLVLNEKQVKDQRAMWQ 309 Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 ++ + ++ ++ R ++ + L I R ++ ++ + ++ Sbjct: 310 VLWPGFRVAPFAADALIAQARRYRDRGELTRGLRWIARADLELRSSPADKRLVLERLVMR 369 Query: 338 IAQTAC 343 +A A Sbjct: 370 LASKAR 375 >gi|88809947|ref|ZP_01125452.1| hypothetical protein WH7805_09042 [Synechococcus sp. WH 7805] gi|88786137|gb|EAR17299.1| hypothetical protein WH7805_09042 [Synechococcus sp. WH 7805] Length = 326 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 18/322 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D + I + +L L+ E + E + Sbjct: 2 PIQLLWGDDSAALERAIQSVINSALDPAWASVNLSRLDGSESGQARQAL-EEARTPPFGG 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNIC---NHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 +++L++ L + +I + ++ N K + LR V Sbjct: 61 GARVVLLQRSPFCNACPSELADRFEASIDAIPDSTQLLLCNPTKPDGRLRTTKALQKRVK 120 Query: 139 A---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 A + D L+E + ++ A L+ +G D ELQ Sbjct: 121 AGQAKELSFKLPAVWDGAGQ-RQLVERTADELALTLEPNAVDALIDAIGSDSARLTMELQ 179 Query: 190 KLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL+ + I+ V+ +I ++ + +A + G AI L D + P+ Sbjct: 180 KLALHAESTGSDRISAAAVQSLIDGLSTNALQ-VGDALLAGDPGEAIALLDALIEGGEPA 238 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 ++ + + + ++++ I + P + ++++ L+ + Sbjct: 239 LRIVATLSGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPERCL 297 Query: 308 ETLHKIDHRIHLARKKKYLEKN 329 + L ++ ++ Sbjct: 298 KLLGRLLDVEAALKRGALPGDA 319 >gi|293391008|ref|ZP_06635342.1| DNA polymerase III, delta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951542|gb|EFE01661.1| DNA polymerase III, delta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 344 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 111/311 (35%), Gaps = 14/311 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V+ G D L+ E N + D V L+ + + + + + S LF Sbjct: 20 VYFLVGEDPLLLNESANGIYQTALQRGFD--EKVELD-INASTDWNDLFERVQSMGLFFN 76 Query: 83 KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TSV 137 K++I+++ +L L E I + + I + ++ K + Sbjct: 77 KQLIILDLPENATALLQKNLSEFISLLQPDVLPIFRLAKLTKAAEKQAWFMAANQYEPQA 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++C N L + + SI +EA Q+L + + +A + LQ L Sbjct: 137 VLVNCQTPNAEQLPRWVANRAKMLGLSIEQEAVQLLCYSYENNLLALKQTLQLLDL-LYP 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V ++ + V + ++A + GK A + + LL + Sbjct: 196 DRKLTFARVNSVVEQSSVFTPFQWVDAILGGKGNRARRILTGLKDEDVQPIILLRTLQRD 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLHK 312 L +I ++ ++ + + + +R++ ++++ + + Sbjct: 256 LMTLLEISKPEQPQSLDSPLPTDQLREQFDRLKVWQNRRSLFTQAVQRLTYRKLYLFFQQ 315 Query: 313 IDHRIHLARKK 323 + A+++ Sbjct: 316 LADVERCAKQE 326 >gi|86141367|ref|ZP_01059913.1| hypothetical protein MED217_05097 [Leeuwenhoekiella blandensis MED217] gi|85831926|gb|EAQ50381.1| hypothetical protein MED217_05097 [Leeuwenhoekiella blandensis MED217] Length = 343 Score = 76.5 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 90/255 (35%), Gaps = 12/255 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I +L + N+ F+ +VL ++ + ++ + Sbjct: 18 RPIYFLMGEEPYYIDQLADYIADNVLTEEEKGFNQMVLYGRDVSLD--DVLSQAKRFPMM 75 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 +++++++++ + K + LE +++ K + R E Sbjct: 76 AERQVVIVKEAQDMSREILAQPDKSKNKLEAYAENPQPTTVLVFCYKYKKLDKRKRVYKE 135 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 S L + + D I + ++ +A +L+ LG D NEL+KL Sbjct: 136 IAKSGLIFESKKLYENQVGDWIRRVMSGKGYTVEPKAAHMLVEFLGTDLSKINNELEKLR 195 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHAL 250 E IT V++ I + E+ A + + A + ++F + P Sbjct: 196 LILPEGSTITPLAVEENIGISKDFNNFELQRAIGEKDVVKAHRIINYFSQNPKDNPMVVT 255 Query: 251 LHGFLQKFQLLEKIH 265 + FQ L H Sbjct: 256 IALLFSFFQNLLIYH 270 >gi|308048540|ref|YP_003912106.1| DNA polymerase III, delta subunit [Ferrimonas balearica DSM 9799] gi|307630730|gb|ADN75032.1| DNA polymerase III, delta subunit [Ferrimonas balearica DSM 9799] Length = 344 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 101/292 (34%), Gaps = 14/292 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D LI E + L ++ + E S SLF+ Sbjct: 17 PILMVFGDDV-LIREECRDALRQACYRLGAQERLSLVQESPFNWDELR--QECQSLSLFA 73 Query: 82 KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135 ++I +E + VL L E + + + +++ + ++ T K + Sbjct: 74 SSRVIELELPSLKPGTDGAAVLAELAEEL-SHQQDLWLLLHGPKAGRDQTNTKWFKALDK 132 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 L + H I E Q + ++ + L + G+ +A+ + +L+ Sbjct: 133 HGLYVQALTPEGPHYQRWIAERARRHQLQLDRDGQNYLASLFEGNLLAADQAMAQLALIA 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + ++ + + + D + E+ +A + G I A+ + + + Sbjct: 193 PGQ-RLNQEALAEHLQDQSRYSVFELADALLAGNIDGALKILSQLRQEGTAATLVSWAVN 251 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 +++ LL + + S ++++ + ++ + Q L + Sbjct: 252 REWALLLGF-CAGQANGQSMAELMKAAR--VWEKRQRLYQNCLNRLGPERIS 300 >gi|187730370|ref|YP_001879350.1| DNA polymerase III subunit delta [Shigella boydii CDC 3083-94] gi|187427362|gb|ACD06636.1| DNA polymerase III, delta subunit [Shigella boydii CDC 3083-94] Length = 343 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 98/266 (36%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 54 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK + + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRTLHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQMQLRQAVQLLTRTELTLKQ 314 >gi|224369586|ref|YP_002603750.1| HolA [Desulfobacterium autotrophicum HRM2] gi|223692303|gb|ACN15586.1| HolA [Desulfobacterium autotrophicum HRM2] Length = 420 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 102/298 (34%), Gaps = 29/298 (9%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWN--------- 72 F+ YG + L + ++ + S +L ++ + Sbjct: 22 FLAYG-EAFLTRKAFDKIIAALVPEERRELSYELLEGVDASLANVKERLATYSFEPLLVL 80 Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIA 131 + + LFS + S K+ +D ++ I K + H +++ ++ K L K Sbjct: 81 GLKNAPLFSAPTAPKVAGFS--KQEIDTFQKFIKKPFLEGHFLVVTTDTADKRRALFK-- 136 Query: 132 EKFTSVLAISC-------YPDNKIH---LMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 E L I C D L ++E +L K I +A +L+ G D Sbjct: 137 EIKAVGLVIDCSVPKGSRQADKTQQSAILRQIMEGTLNATGKGIDGDAFAMLVDRTGFDP 196 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + L+KL S+ E + IT Q V+ ++ T I E+ NA A+ L Sbjct: 197 STLSDNLEKLVSFIGERVSITVQDVQKVVKRTRKDAIFELTNAVCDRNAGTALFYLKSLL 256 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR--NILQES 297 + ++ + + L + E S Q + +++++ Sbjct: 257 NAGFHPLQIVMALSNQLRKLVLVKFFIERSRQRGIPCWQPNSPYNRFKQHTMPMIEQA 314 >gi|309811272|ref|ZP_07705061.1| DNA polymerase III, delta subunit [Dermacoccus sp. Ellin185] gi|308434754|gb|EFP58597.1| DNA polymerase III, delta subunit [Dermacoccus sp. Ellin185] Length = 323 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 20/299 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + G ++ L + + H +V ++ E Q E+ S SLF Sbjct: 7 IILVTGPERIL-AQRAVEESLEAITAAHPEAEVVRIDVAEYQ--PGRLTTEL-SPSLFGG 62 Query: 83 KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNN--TLRKIAEKFTSV 137 +++I++ + ++D LE+ + + + +I+ K K L+K Sbjct: 63 RRVIVVRDFDEAPDALVDELEDALKVGLDDVNLIVLHKGGNRAKRVLDALKKAKAPVIEA 122 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 AI + ++ I+ E + LL G D ++L Sbjct: 123 PAIKS----DRDKSAFVMNEFRRARRRITPEGVRALLEAAGKDTSELAAACRQLVDDT-- 176 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ++ E V + +AT+ G A+ L AS + ++ + Sbjct: 177 SGVVDENTVGTYHGGKVEATGFRVADATVAGNAPEALRLLRHAFASGVDPVPIVAVLASQ 236 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + K + S S + Q + + + + R W+ + + + Sbjct: 237 LRQVAK--VASAGSGRSADLAKQLGMPP---WQVDKARTASRGWDGVRLGRAIQAVAAA 290 >gi|315287066|gb|EFU46480.1| DNA polymerase III, delta subunit [Escherichia coli MS 110-3] Length = 331 Score = 76.5 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + ++I++ Sbjct: 42 SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ D ++A + GK A+ + Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAGNDAAHFTPFHWVDALLMGKSKRALHI 220 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 276 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L +++ +R+ + + ++ Sbjct: 277 ALNRLSQSQLRQAVQLLTRTELTLKQ 302 >gi|227833673|ref|YP_002835380.1| DNA polymerase III, delta subunit [Corynebacterium aurimucosum ATCC 700975] gi|227454689|gb|ACP33442.1| DNA polymerase III, delta subunit [Corynebacterium aurimucosum ATCC 700975] Length = 315 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 41/314 (13%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S V + G D+ L E ++ + L A E+ + E S SL Sbjct: 6 SAPVHLILGDDEFL-AERARLSIQH--------GEVTKLKASEVSEGE---ILEATSPSL 53 Query: 80 FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTL 127 F + ++I+I ++ K+V L + + +I + + +KK L Sbjct: 54 FGEDRVIVISDVERAGKEVTKILLDACANPMPGITLILLYSVTAKTLKKKKKPPELIAAL 113 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 RK AE S YP+ L + + Q LL +G D + Sbjct: 114 RKTAEVHE---VFSLYPNE---LAQWATREFASHGVRPTPDVVQALLDGVGSDLRELASA 167 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L +T + V + +I +A + G++ A+ L Sbjct: 168 ISQLVFDTGGK--VTREAVHAYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 225 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A+ K + +++ + + P + Q R W+ + Sbjct: 226 VAIASALANKVGNIARLYSARGDQYSLASQTGMA------PYAVKLTQPVARRWSGENIT 279 Query: 308 ET---LHKIDHRIH 318 + + ++D + Sbjct: 280 KAVILMTELDAAVK 293 >gi|149199485|ref|ZP_01876520.1| hypothetical protein LNTAR_01487 [Lentisphaera araneosa HTCC2155] gi|149137420|gb|EDM25838.1| hypothetical protein LNTAR_01487 [Lentisphaera araneosa HTCC2155] Length = 365 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 24/285 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSLFS 81 + G+D+ I + + +S DPF+L V++ E + I S F Sbjct: 7 LISGNDEARIKLKAKELVEILSEGSTDPFALEVISRQESESPDEMLKRTILSYMSPPFFG 66 Query: 82 KKKIILIENLSTEKK------------VLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 KK I +++ K+ + + +E+I N +I N+ K L K Sbjct: 67 -KKTIWLDDFPAFKQENGTSKSATALEIRNLVEQISQFPADNINFVISGNDCDKRKALYK 125 Query: 130 IAEKFTSVLAISCYPDNKIH----LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 K V + + + ++ E SI +A L+ LG D + Sbjct: 126 ACSKNGEVHLFNKPEKKNRNWQVEMTQIVREQANEMHLSIQPQALDYLVTCLGNDTQRVQ 185 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L+ L Y I V+++I NA + + A+ + ++ + Sbjct: 186 PTLETLWCYANGQNPINLNQVQNVISGNEAADAWIYSNALSKRSLEIALNSLNILMSREK 245 Query: 246 PSHALLHGFLQK----FQLLEKIHIIKECSNISFEKIIQKTEKNI 286 +L+ L + F + ++ + + ++ T K++ Sbjct: 246 DPESLVSRLLMQASSLFHNFVQAKLVMQALKLKNSSELEATLKSV 290 >gi|293610314|ref|ZP_06692615.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827546|gb|EFF85910.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 329 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 134/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRIPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ E L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + +A+ P Sbjct: 181 MRVRDTFPDQQLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIAAGEPES 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L ++D I Sbjct: 291 WSTLLLQVDAAIK 303 >gi|261867170|ref|YP_003255092.1| DNA polymerase III subunit delta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412502|gb|ACX81873.1| DNA polymerase III, delta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 344 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 110/312 (35%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G D L+ E + D V L+ + + + + + S LF Sbjct: 19 RVYFLVGEDPLLLNESAEGIYQAALQQGFD--EKVELD-INASTDWNDLFERVQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136 K++I+++ +L L E I + + I + ++ K + Sbjct: 76 NKQLIILDLPENATALLQKNLSEFISLLQPDVLAIFRLAKLTKAAEKQAWFMAANQYEPQ 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++C N L + + SI +EA Q+L + + +A + LQ L Sbjct: 136 AVLVNCQTPNAEQLPRWVANRAKMLGLSIEQEAVQLLCYSYENNLLALKQTLQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T V ++ + V + ++A + GK A + + LL + Sbjct: 195 PDRKLTFARVNSVVEQSSVFTPFQWVDAILGGKGNRARRILTGLKDEDVQPIILLRTLQR 254 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311 L +I ++ ++ + + + +R++ ++++ + Sbjct: 255 DLMTLLEISKPEQPQSLDSPLPTDQLREQFDRLKVWQNRRSLFTQAVQRLTYRKLYLFFQ 314 Query: 312 KIDHRIHLARKK 323 ++ A+++ Sbjct: 315 QLADVERCAKQE 326 >gi|298369323|ref|ZP_06980641.1| DNA polymerase III, delta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283326|gb|EFI24813.1| DNA polymerase III, delta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 333 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 84/254 (33%), Gaps = 6/254 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E ++ + + + + + S S LF+ Sbjct: 17 PLYVIHGEEDLLRIEALDTLRAAAKRQGYLNREVYTADNAF---DWSELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I K + L+ + + + + ++ +++K T K + Sbjct: 74 DLKLLEIHIPGGKPGKNGGEALQSLAERLPEDTVTVVMLPKLEKAQTQAKWFGALAAKGI 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + L I L I +A + + G+ +A++ E+ KL+ + Sbjct: 134 MLEAKAVGTAALPQWIRGRLRKLGLGIESDALTLFAERVEGNLLAAKQEIDKLALLHPQG 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + + + + ++ A ++G L + S LL + Sbjct: 194 HTVNMADAEAAVANVARFDVFQLAGAWMKGDGLRVARLLEGLEESGEEPVLLLWAVAEDI 253 Query: 259 QLLEKIHIIKECSN 272 + L ++ + Sbjct: 254 RTLIRLTAALKQGQ 267 >gi|289449692|ref|YP_003475208.1| DNA polymerase III subunit delta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184239|gb|ADC90664.1| DNA polymerase III, delta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 346 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 113/324 (34%), Gaps = 20/324 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--NISTFWNEINSTSLF 80 +++ G + LI L+ + +K + + ++ + + +I + + Sbjct: 27 LYLLAGEETYLIRSLLKELQKTFISPGAEDLDVFKYDSQSSENKLSPKVLIEQIKTPAFI 86 Query: 81 SKKKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 S +++ ++ + E++I K++ + + ++ E K +N +K+ + Sbjct: 87 SARRLFILRRTGWFNGSVPFAEQLIDMFKSLDDTVCLVFWEE-KVDNRQKKLLDAVRKYG 145 Query: 139 AISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL- 196 L + + +IS+ A + L++ D NE+ K++ YC Sbjct: 146 IYGVLNRQTVQELSRWLSGFFAKYKLNISRAAAEKLISVAQSDMFTLMNEVNKITLYCQA 205 Query: 197 -EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++E + + I ++ + + G+ AI L L P +L Sbjct: 206 TAQTEVSEALLDLVSPPDLAGNIFQLNDTLLSGRSDRAINLLHKLLVQPQPPLLILFMLA 265 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + L + I + I L + R + + + + ++ Sbjct: 266 RHIKQLIIVKSITNREEAAAALHIPGF----------ALDKLYRQSSAYSLEKLVKIYNN 315 Query: 316 RIHLAR--KKKYLEKNIIFQTILY 337 R K L++ + + ++ Sbjct: 316 CYLSDRAIKNGDLDEVLALELLIT 339 >gi|294776468|ref|ZP_06741943.1| DNA polymerase III, delta subunit [Bacteroides vulgatus PC510] gi|294449665|gb|EFG18190.1| DNA polymerase III, delta subunit [Bacteroides vulgatus PC510] Length = 338 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 119/335 (35%), Gaps = 17/335 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I + KN + V+ G + I + + + F+ ++ Sbjct: 1 MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++++ K + + L + K + + I+++ K Sbjct: 60 ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELVYYLQKPLDSTILVLCHKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L AE + L I L I +A +++ +G Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL IT + ++ I + E+ NA + ++ A + Sbjct: 175 ADLSRMAGELEKLIITLPRGQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + + S + I + ++ + Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPD---KSEQGIANQLGLKSSWQSKDYMV 291 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328 ++R ++ V + + +I + ++ L Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLGD 325 >gi|325297796|ref|YP_004257713.1| DNA polymerase III, delta subunit [Bacteroides salanitronis DSM 18170] gi|324317349|gb|ADY35240.1| DNA polymerase III, delta subunit [Bacteroides salanitronis DSM 18170] Length = 338 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 119/326 (36%), Gaps = 15/326 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I ++ KN + V+ G + I + + + + F+ VL Sbjct: 1 MAKETTYEEIVRNLKNKIYA-PVYFLMGEEDYYIDRIADYILEYVLNDSEKEFNQTVLYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++I+ K + D L + K + + I++ K Sbjct: 60 ADT--DIATVINAAKRYPMMSKYQVLVIKEAQNLKNL-DELLYYLTKPMPSTILVFCYKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + K L E + + L I L Q I +A +++ +G Sbjct: 117 GSLDKRKKL--TVEIEKTGVVFESKKLKDTQLPGFITSYLKRRQVEIEPKASELMAEFIG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D +EL+KL IT + ++ I + E+ NA I ++ A + Sbjct: 175 TDLSRMASELEKLIITLPKGQRRITPEQIERNIGISKDFNNFELRNALIAKDVFKANQIV 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + E + + I + + R+ Q Sbjct: 235 KYFEENPKSNPLQVTLAVLFNFFSNLMLAYYAPE---KNEQGIAAQLGLRSVWQARD-YQ 290 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321 ++R + V + + I ++ Sbjct: 291 TAMRCYTGVKVMKIIEAIRQCDVRSK 316 >gi|218549785|ref|YP_002383576.1| DNA polymerase III subunit delta [Escherichia fergusonii ATCC 35469] gi|218357326|emb|CAQ89963.1| DNA polymerase III, delta subunit [Escherichia fergusonii ATCC 35469] Length = 343 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 92/252 (36%), Gaps = 8/252 (3%) Query: 74 INSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLF+ ++ ++L+ + + L + + ++I++ N++ K Sbjct: 68 CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWF 127 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + ++C + L + + A Q+L G+ +A L++ Sbjct: 128 TALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALER 187 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS D +T V+ + D ++A + GK A+ + L Sbjct: 188 LSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVIL 246 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++ LL + ++ ++ + K + +R ++ E+L ++ +R+ + Sbjct: 247 LRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGEALNRLSQAQLRQAV 302 Query: 311 HKIDHRIHLARK 322 + ++ Sbjct: 303 QLLTRTEITLKQ 314 >gi|302380749|ref|ZP_07269214.1| DNA polymerase III, delta subunit [Finegoldia magna ACS-171-V-Col3] gi|302311692|gb|EFK93708.1| DNA polymerase III, delta subunit [Finegoldia magna ACS-171-V-Col3] Length = 332 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ N LS+ + + +G +K I + ++ K++ + D + L + Sbjct: 6 AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55 Query: 70 FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121 ++ + +FS K++ILI +S K +D L I +III S + Sbjct: 56 IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-----SISKEAKQILLAN 176 K+ L+ E I N+ I L + +I E L+ N Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 I NEL K + LE ITEQ + +I + + I ++ ++ Q + I Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D + S LH ++ F+ L + + +S +I +K + I P + N +Q Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISPYELNKIQN 286 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323 ++ W + +R +HK+ + Sbjct: 287 FVKNWRYDQLRFAIHKLYEVEINLKSN 313 >gi|281426107|ref|ZP_06257020.1| DNA polymerase III, delta subunit [Prevotella oris F0302] gi|281399683|gb|EFB30514.1| DNA polymerase III, delta subunit [Prevotella oris F0302] Length = 344 Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 115/305 (37%), Gaps = 12/305 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + I ++ + N+ F+ ++ ++ S + + + + Sbjct: 25 PIYILMGEESYYIDKISDYIADNVLKPEERDFNQTIVFGSDVSA--SQIVDSAKAFPMMA 82 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K++++++ K + LE+ + + +++ K+ I K + A+ + Sbjct: 83 EKRVVIVKESQNLKG-TEPLEKYFKNPVPSTVLVFCHKNGSIDKRKKIIPAAQ-AGGAVI 140 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198 + L IE L Q ++ ++A Q++ ++G D +EL K L S D Sbjct: 141 FESKKLYERELPGFIETYLRQHQATVEQKAAQMIADHVGADLNRLTSELDKVLISLPASD 200 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--HALLHGFLQ 256 +T V+ I + E+ NA +Q IY A ++ +F + + L Sbjct: 201 RRVTPDVVEKEIGVSKDFNAFELRNAIVQRDIYKANLIIKYFDNNPKAGSLFSFLPMLFS 260 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F+ L +N + + R+ + +R ++ + + KI Sbjct: 261 YFENLMIAFYSPNKNNENAVAEFLELRNG--WAARDYIT-GMRNYSGMKTMQIISKIREI 317 Query: 317 IHLAR 321 ++ Sbjct: 318 DAKSK 322 >gi|312171715|emb|CBX79973.1| DNA polymerase III, delta subunit [Erwinia amylovora ATCC BAA-2158] Length = 343 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 104/292 (35%), Gaps = 15/292 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ L+ E + + F+ V ALEI + ++ + SLF+ + Sbjct: 21 YLLSGNEPLLLQEAQDAIRAAAQQQG---FTEHVSVALEIGTDWQEIFSACQALSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138 + +L+ + + L + + ++I+++ + K N+ K + + Sbjct: 78 QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRTTRLTKAQENSAWYKAF--SANAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A+ C L + ++ A Q+L G+ +A L++LS D Sbjct: 136 AVPCQTPEHGQLPRWVTMRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + D ++A + GK A+ + A LL + Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDSEPVILLRTLQRDL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 LL + + + + +R + E+L+ + + + Sbjct: 255 LLLLTLQRQMAY--TPLRTLYDRHR--VWQNRRALFAEALQRLTATRLAKAI 302 >gi|258544721|ref|ZP_05704955.1| DNA polymerase III, delta subunit [Cardiobacterium hominis ATCC 15826] gi|258520040|gb|EEV88899.1| DNA polymerase III, delta subunit [Cardiobacterium hominis ATCC 15826] Length = 336 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 106/256 (41%), Gaps = 15/256 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + YGS+ L E ++ + +D + ++ I + E+ + SLF+ Sbjct: 20 VTLIYGSEALLNSEALDAARARALADGYDERQRLYGDSR-----IDSLIQELETPSLFAP 74 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL---RKIAEKFT-S 136 K+++ + T+K D L + + N +II + + K +T + + + + Sbjct: 75 KRLLELHLDAKKTDKATSDILRRLAELRLENSRLIIFAPNLDKPHTTAWYKALFSQGNLA 134 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + YP I + L + +++ A ++L+AN G+ A++ +++L+ + Sbjct: 135 IASAALYP---PQFAKQIAQRLQAAKLRLTEAAYELLVANCQGNLFAAKQAIERLTIHPQ 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL- 255 +I + + +++ D + +A + A +A A L+ L Sbjct: 192 AQNIIDDTLLTELLDDFSQFNTFALSDAILGADWPKAHRIAARLQAENPRDTTLITWLLQ 251 Query: 256 QKFQLLEKIHIIKECS 271 + LL +H + S Sbjct: 252 RDASLLIGLHNEAQNS 267 >gi|22125085|ref|NP_668508.1| DNA polymerase III subunit delta [Yersinia pestis KIM 10] gi|45440935|ref|NP_992474.1| DNA polymerase III subunit delta [Yersinia pestis biovar Microtus str. 91001] gi|108808482|ref|YP_652398.1| DNA polymerase III subunit delta [Yersinia pestis Antiqua] gi|108811257|ref|YP_647024.1| DNA polymerase III subunit delta [Yersinia pestis Nepal516] gi|145599908|ref|YP_001163984.1| DNA polymerase III subunit delta [Yersinia pestis Pestoides F] gi|149365491|ref|ZP_01887526.1| DNA polymerase III, delta subunit [Yersinia pestis CA88-4125] gi|153947907|ref|YP_001401890.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis IP 31758] gi|162418671|ref|YP_001606331.1| DNA polymerase III subunit delta [Yersinia pestis Angola] gi|165925170|ref|ZP_02221002.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937599|ref|ZP_02226161.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008587|ref|ZP_02229485.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212472|ref|ZP_02238507.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399368|ref|ZP_02304892.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422511|ref|ZP_02314264.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423810|ref|ZP_02315563.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468418|ref|ZP_02333122.1| DNA polymerase III, delta subunit [Yersinia pestis FV-1] gi|170025238|ref|YP_001721743.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis YPIII] gi|218929689|ref|YP_002347564.1| DNA polymerase III subunit delta [Yersinia pestis CO92] gi|229838154|ref|ZP_04458313.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895946|ref|ZP_04511116.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides A] gi|229898735|ref|ZP_04513880.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901494|ref|ZP_04516616.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516] gi|270489680|ref|ZP_06206754.1| DNA polymerase III, delta subunit [Yersinia pestis KIM D27] gi|294504412|ref|YP_003568474.1| DNA polymerase III subunit delta [Yersinia pestis Z176003] gi|21957939|gb|AAM84759.1|AE013721_7 DNA polymerase III, delta subunit [Yersinia pestis KIM 10] gi|45435794|gb|AAS61351.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Microtus str. 91001] gi|108774905|gb|ABG17424.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516] gi|108780395|gb|ABG14453.1| DNA polymerase III, delta subunit [Yersinia pestis Antiqua] gi|115348300|emb|CAL21231.1| DNA polymerase III, delta subunit [Yersinia pestis CO92] gi|145211604|gb|ABP41011.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides F] gi|149291904|gb|EDM41978.1| DNA polymerase III, delta subunit [Yersinia pestis CA88-4125] gi|152959402|gb|ABS46863.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis IP 31758] gi|162351486|gb|ABX85434.1| DNA polymerase III, delta subunit [Yersinia pestis Angola] gi|165914349|gb|EDR32964.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922777|gb|EDR39928.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992969|gb|EDR45270.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206403|gb|EDR50883.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958525|gb|EDR55546.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051872|gb|EDR63280.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057980|gb|EDR67726.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751772|gb|ACA69290.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis YPIII] gi|229681423|gb|EEO77517.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516] gi|229688283|gb|EEO80354.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694520|gb|EEO84567.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700869|gb|EEO88898.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides A] gi|262366398|gb|ACY62955.1| DNA polymerase III subunit delta [Yersinia pestis D182038] gi|270338184|gb|EFA48961.1| DNA polymerase III, delta subunit [Yersinia pestis KIM D27] gi|294354871|gb|ADE65212.1| DNA polymerase III subunit delta [Yersinia pestis Z176003] gi|320016189|gb|ADV99760.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 344 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 103/273 (37%), Gaps = 12/273 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLN 59 M I + + + + L + + G++ L+ E + ++ + + FS L+ Sbjct: 1 MIRIYPEQLVAQLHEGLRACY---LLCGNEPLLLQESQDHIRRVASQHDFTEHFSFA-LD 56 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117 A ++I + + SLF+ ++ +L+ + + + L ++ + ++I++ Sbjct: 57 AHTEWEHIFSL---CQALSLFASRQTLLLSFPDSGLTAPISEQLVKLSGLLHPDILLILR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 +N++ K + + + +SC + L + ++ A Q+L Sbjct: 114 ANKLTKAQENSAWFKALSKNGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A + Sbjct: 174 YEGNLLALSQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 LL ++ LL + E Sbjct: 233 LQQLQQEDSEPVILLRTVQRELLLLLALKRQME 265 >gi|262184678|ref|ZP_06044099.1| hypothetical protein CaurA7_11844 [Corynebacterium aurimucosum ATCC 700975] Length = 312 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 41/314 (13%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 S V + G D+ L E ++ + L A E+ + E S SL Sbjct: 3 SAPVHLILGDDEFL-AERARLSIQH--------GEVTKLKASEVSEGE---ILEATSPSL 50 Query: 80 FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTL 127 F + ++I+I ++ K+V L + + +I + + +KK L Sbjct: 51 FGEDRVIVISDVERAGKEVTKILLDACANPMPGITLILLYSVTAKTLKKKKKPPELIAAL 110 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 RK AE S YP+ L + + Q LL +G D + Sbjct: 111 RKTAEVHE---VFSLYPNE---LAQWATREFASHGVRPTPDVVQALLDGVGSDLRELASA 164 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L +T + V + +I +A + G++ A+ L Sbjct: 165 ISQLVFDTGGK--VTREAVHAYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 222 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A+ K + +++ + + P + Q R W+ + Sbjct: 223 VAIASALANKVGNIARLYSARGDQYSLASQTGMA------PYAVKLTQPVARRWSGENIT 276 Query: 308 ET---LHKIDHRIH 318 + + ++D + Sbjct: 277 KAVILMTELDAAVK 290 >gi|299141934|ref|ZP_07035069.1| DNA polymerase III, delta subunit [Prevotella oris C735] gi|298576785|gb|EFI48656.1| DNA polymerase III, delta subunit [Prevotella oris C735] Length = 344 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 115/305 (37%), Gaps = 12/305 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + I ++ + N+ F+ ++ ++ S + + + + Sbjct: 25 PIYILMGEESYYIDKISDYIADNVLKPEERDFNQTIVFGSDVSA--SQIVDSAKAFPMMA 82 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K++++++ K + LE+ + + +++ K+ I K + A+ + Sbjct: 83 EKRVVIVKESQNLKG-TEPLEKYFKNPVPSTVLVFCHKNGSIDKRKKIIPAAQ-AGGAVI 140 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198 + L IE L Q ++ ++A Q++ ++G D +EL K L S D Sbjct: 141 FESKKLYERELPGFIETYLRQHQATVEQKAAQMIADHVGADLNRLTSELDKVLISLPASD 200 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--HALLHGFLQ 256 +T V+ I + E+ NA +Q IY A ++ +F + + L Sbjct: 201 RRVTPDVVEKEIGVSKDFNAFELRNAIVQRDIYKANLIIKYFDNNPKAGSLFSFLPMLFS 260 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F+ L +N + + R+ L +R ++ + + KI Sbjct: 261 YFENLMIAFYSPNKNNENAVAEFLELRNG--WAARDYLT-GMRNYSGMKTMQIISKIREI 317 Query: 317 IHLAR 321 ++ Sbjct: 318 DAKSK 322 >gi|168334018|ref|ZP_02692237.1| DNA polymerase III, delta subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 323 Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 13/268 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG+++ L + I + K +D + V N+ T +E + F+ K Sbjct: 5 YLIYGNEEYLKTQQIQKLKAATVSD-NDVMNFVTFAGPTC--NVETIIDEGETLPFFNAK 61 Query: 84 KIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K ILI+ K D L + + ++ ++ K N L K S Sbjct: 62 KFILIKESGLFAPGRKDASDRLSDWLKIFPDYICMVFSETQVDKRNKLYKTLITVGSAQE 121 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + L +I + I K ++ + + + E +KL +YC Sbjct: 122 FD-FVTEAQML-SIINKEFH--NPPIEKNVFSYFISRMPKNVGYTLLEFEKLLAYCCHSP 177 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT + I T I ++ Q +AI L +A K A+L ++ Sbjct: 178 -ITIAAIDKICTITLEQKIFDLFTKIAQQDSTSAIALYHHLVAQKESPIAMLALIATNYR 236 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNII 287 + +I + + + +I + I Sbjct: 237 NIFQIKDLARLKH-TPYQISHQLGLPIY 263 >gi|189461368|ref|ZP_03010153.1| hypothetical protein BACCOP_02023 [Bacteroides coprocola DSM 17136] gi|189431897|gb|EDV00882.1| hypothetical protein BACCOP_02023 [Bacteroides coprocola DSM 17136] Length = 338 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 112/317 (35%), Gaps = 13/317 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I ++ KN S ++ G + I + + ++ F+ VL Sbjct: 1 MAKETTYEEIVRNIKNKVYS-PIYFLMGEEDYYIDRIADYIMDSVLNETEKEFNQTVLYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++++ K + D L + K + + I++I K Sbjct: 60 ADT--DIATIINGAKRYPMMSKYQVLVVKEAQNLKNL-DELVYYLQKPMPSTILVICYKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L AE + + L I L Q I +A +++ +G Sbjct: 117 GSLDRRKKL--TAEIEKTGVLFESKKLKDAQLPGFIASYLKRKQVEIEPKAAEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL IT + ++ I + E+ NA I I A + Sbjct: 175 TDLNRMAGELEKLIITLPSGQKRITPEQIERNIGISKDYNNFELRNALIAKDILKANQIV 234 Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 ++F + K + L F + ++ + Sbjct: 235 NYFEENPKNNPLQVTLAVLFNFYANLMLAYYAPEKTEQGIAAQLGLRSP--WQAKDYML- 291 Query: 297 SLRIWNKNLVRETLHKI 313 ++R + V + + I Sbjct: 292 AMRRYTGVKVMQIIGAI 308 >gi|238762877|ref|ZP_04623845.1| DNA polymerase III subunit delta [Yersinia kristensenii ATCC 33638] gi|238698888|gb|EEP91637.1| DNA polymerase III subunit delta [Yersinia kristensenii ATCC 33638] Length = 315 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 98/260 (37%), Gaps = 10/260 (3%) Query: 74 INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLF+ ++ +L+ + + + L ++ + ++I+++N++ K Sbjct: 39 CQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWF 98 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + +SC + L + + A Q+L G+ +A L++ Sbjct: 99 KALSQNGVFVSCQTPEQAQLPRWVSARAKNLNLEVDDAAVQLLCYCYEGNLLALSQALER 158 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS D +T V+ + D ++A + GK A + L Sbjct: 159 LSL-LYPDGKLTLPKVEHAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVIL 217 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L ++ LL + E + + + + + +R ++ ++L+ + ++ + Sbjct: 218 LRTLQRELLLLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMQQLQHAV 273 Query: 311 HKIDHRIHLARKKKYLEKNI 330 H + R K+ ++I Sbjct: 274 HLLAQI--EVRLKQDYGQSI 291 >gi|224025859|ref|ZP_03644225.1| hypothetical protein BACCOPRO_02601 [Bacteroides coprophilus DSM 18228] gi|224019095|gb|EEF77093.1| hypothetical protein BACCOPRO_02601 [Bacteroides coprophilus DSM 18228] Length = 338 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 117/326 (35%), Gaps = 15/326 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I ++ KN S V+ G + I + + + F+L +L Sbjct: 1 MAKETTYEEIARNLKNKIYS-PVYFLMGEEDYYIDRISDYIMDTVLTETEKEFNLTLLYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I + N + SK +++++ K + D L + K + + I+++ K Sbjct: 60 SDT--DIVSIINAARRYPMMSKYQVVIVREAQNLKNL-DELIHYLQKPMSSTILVMCYKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + + EK + D + L I L Q I +A +++ +G Sbjct: 117 GTLDRRKKITAELEKAGVLFESKKLKDTQ--LPGFISSYLKRKQVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL IT + ++ I + E+ NA I+ ++ A + Sbjct: 175 TDLNRMAGELEKLIITLPAGQKRITAEQIERNIGISKDYNNFELRNALIEKDVFKANQIV 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + + S+ + ++ + Sbjct: 235 KYFEDNPKNNPLQVTLAVLFNFFSNLMLAYYAPDKSDQGIASQLGLRSP---WQAKDYMA 291 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321 +R + V + + I ++ Sbjct: 292 -GMRKYTGVKVMQIIGAIRTCDAKSK 316 >gi|299771582|ref|YP_003733608.1| DNA polymerase III, delta subunit [Acinetobacter sp. DR1] gi|298701670|gb|ADI92235.1| DNA polymerase III, delta subunit [Acinetobacter sp. DR1] Length = 329 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 133/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRTPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNEHNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ + L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEADKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + +A+ P Sbjct: 181 MRVRDTFPDQQLIQIEQLYACLQDQSRYTTYDLSDALLEGNLGQSIKIFQYLIAAGEPDS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L +ID I Sbjct: 291 WSTLLLQIDAAIK 303 >gi|150005816|ref|YP_001300560.1| hypothetical protein BVU_3312 [Bacteroides vulgatus ATCC 8482] gi|254882004|ref|ZP_05254714.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640989|ref|ZP_07995696.1| hypothetical protein HMPREF9011_01293 [Bacteroides sp. 3_1_40A] gi|149934240|gb|ABR40938.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254834797|gb|EET15106.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387367|gb|EFV68239.1| hypothetical protein HMPREF9011_01293 [Bacteroides sp. 3_1_40A] Length = 338 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 52/346 (15%), Positives = 125/346 (36%), Gaps = 18/346 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I + KN + V+ G + I + + + F+ ++ Sbjct: 1 MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++++ K + + L + K + + I+++ K Sbjct: 60 ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELVYYLQKPLDSTILVLCHKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L AE + L I L I +A +++ +G Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL IT + ++ I + E+ NA + ++ A + Sbjct: 175 ADLSRMAGELEKLIITLPRGQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + + S + I + ++ + Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPD---KSEQGIANQLGLKSSWQSKDYMV 291 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338 ++R ++ V + + +I + ++ L +++ + + I Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLGDGDLLRELVYKI 336 >gi|326319244|ref|YP_004236916.1| DNA polymerase III subunit delta [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376080|gb|ADX48349.1| DNA polymerase III, delta subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 350 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 98/301 (32%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ +G + L E + + + + S + + S S SLF Sbjct: 17 RPLYVIHGDEPLLQQEAADAIRASAREQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+++ I + K L++I N + ++ + K Sbjct: 75 ADKQVVEIRIPSGKPGKDGGAALQQIAASAAGNEGTLTLVMLPRLDKATRTGAWFSALDR 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190 +++ P + L I + L + + ++ Q + G+ +A+ E+QK Sbjct: 135 EGVSVQIDPVERGVLPQWIAQRLAVQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ ++ V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPPGELSWSQVEAAVLNVARYDVFKLSEAVLSGQVARMQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L+++ + + + K + + + ++ L Sbjct: 254 HWTLAEDIRSLKRVKDAVNAGKPLPMALRENR---VWGTKERLFERIVPRFSDAAASRLL 310 Query: 311 H 311 Sbjct: 311 Q 311 >gi|91785201|ref|YP_560407.1| DNA polymerase III subunit delta [Burkholderia xenovorans LB400] gi|91689155|gb|ABE32355.1| DNA polymerase III, delta subunit [Burkholderia xenovorans LB400] Length = 372 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 109/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKALAAAVNDDVLTMITLPRLDAATQKSAWFTALSDAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V+D + + + ++ A + G + + D + +L Sbjct: 195 LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + + L Sbjct: 255 VEEVRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVSEGTLEKAL 307 >gi|332532448|ref|ZP_08408326.1| DNA polymerase III delta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332038091|gb|EGI74538.1| DNA polymerase III delta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 345 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 101/248 (40%), Gaps = 17/248 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVV-LNALEIQKNISTFWNEINST 77 ++ +G + + + Q + D F+L+ + EI + S Sbjct: 18 PFYLVFGEEPFQEAQCVQQIRDCAKQQGFDEVIKFTLMQGFDWQEIIA-------QYQSM 70 Query: 78 SLFSKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK- 133 SLFS + II + +L+ +K + + ++++ + I+I+K + + + Sbjct: 71 SLFSARTIIEL-DLNQQKPGVIGSNTFKKVVELVNPDTILIVKGAKASQEVQRGAWFKAL 129 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + CYP H+ ++E ++ +AK L+ G+ +A EL+KLS Sbjct: 130 DKLGVFVPCYPLTGSHVKRWLDEQCQRLSLNMQSDAKVSLINATEGNLLACFQELEKLSL 189 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + LIT+Q V + + I ++ +A + G AI + + + ++L Sbjct: 190 -LHGNALITQQLVMQGLLNQAKFDIFDLSDALLNGHAKQAIKVLNKLASDNTEVVSILWA 248 Query: 254 FLQKFQLL 261 ++ L Sbjct: 249 ITKELNTL 256 >gi|328957261|ref|YP_004374647.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4] gi|328673585|gb|AEB29631.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4] Length = 253 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 3/251 (1%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 LE + + ++ + K + + + I ++ + I++++ Sbjct: 4 LESYLTHPSESTTLVFFAPYEKLDERKKITKLLKKTATIIEVNALSEKDMRKYIKDTIAN 63 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + S EA ++ + + EL KL Y + IT V++++ + I Sbjct: 64 EEYRYSPEAFELFIQLTDAKLSVAMGELPKLFIYAQDTKFITLDAVQELVAKSLEQNIFA 123 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + ++ + A+ L L K + +F+LL ++ I+ E I + Sbjct: 124 LNEYVLKKDVGQALNLYQDLLLQKEDPIKINAIMTSQFRLLIQVKIL-EKKGYQQGDIAK 182 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + + P + + + +R ++ + E + + + + K ++ +L AQ Sbjct: 183 QLK--THPYRVKLAIQQMRKIEEHSLIEAYNGLIDAEYRLKTGKGDKEMQFELFVLQYAQ 240 Query: 341 TACKNNNFYKR 351 N + YKR Sbjct: 241 KKATNRDQYKR 251 >gi|325124513|gb|ADY84036.1| putative DNA polymerase III, delta subunit [Acinetobacter calcoaceticus PHEA-2] Length = 329 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 134/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRIPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + L L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+A+ + YP ++ ++ E L + + +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++ + LI + + + D ++ +A ++G + +I + + +A+ P Sbjct: 181 MRVRDTFPDQQLIQTEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIAAGEPES 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K ++ Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290 Query: 307 -RETLHKIDHRIH 318 L ++D I Sbjct: 291 WSTLLLQVDAAIK 303 >gi|311107994|ref|YP_003980847.1| DNA polymerase III subunit delta [Achromobacter xylosoxidans A8] gi|310762683|gb|ADP18132.1| DNA polymerase III, delta subunit [Achromobacter xylosoxidans A8] Length = 351 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 108/302 (35%), Gaps = 21/302 (6%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 + +Q+ L ++ G + L+ E ++ + + +V++A + + Sbjct: 12 EHLQRPGNRLA---PLYTVSGDEPLLVTEAVDALRAAARNAGYSERLSMVMDA---RSDW 65 Query: 68 STFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEI 121 S+ S SLF ++I I I K D L ++ + + +++I + Sbjct: 66 SSVTAATQSVSLFGDRRILEIKIPTGKPGKSGADTLAKLAEQAEKQADPDTLVLIALPRL 125 Query: 122 KK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 K + + + ++ I+ + L + L + Q + + Sbjct: 126 DKATRESRWVQALNRGGMMVDIA--NIERGRLPAWVGMRLARQNQRADSATLQWMADKVE 183 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A+ E+QKL + + + V+ + + + + +A + G I I + D Sbjct: 184 GNLLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDIGRTIRMID 242 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A +L ++ +LL ++ ++++ I + ++L Sbjct: 243 GLRAEGEALPLVLWAVGEEIRLLARV-AEARTLGQDVNGLMRRLR--IFGAHERLALQAL 299 Query: 299 RI 300 Sbjct: 300 GR 301 >gi|307730977|ref|YP_003908201.1| DNA polymerase III subunit delta [Burkholderia sp. CCGE1003] gi|307585512|gb|ADN58910.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1003] Length = 372 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 107/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG ++ L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEQLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKSLAASVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + + D +L Sbjct: 195 LYPAGSLSFEQVHDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAVVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L + + + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVTEGSLEKAL 307 >gi|72383083|ref|YP_292438.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. NATL2A] gi|72002933|gb|AAZ58735.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. NATL2A] Length = 342 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 116/302 (38%), Gaps = 27/302 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G+D I + ++ + F+ L+ + ++N E S L S Sbjct: 2 PIHLIWGNDYEACNREIEELINSVIDSSWKSFNYSQLDGNDPKQN-LRALEEAQSAPLGS 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +I+L+ L + + H+I+ +N+ K K+ EK Sbjct: 61 GGRIVLVRRSPFCNGCSIELGNKLEQVIKLIPDKTHLILSNANKPDKRLKTTKLIEKSIQ 120 Query: 137 VLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 I P + +L++ +L ++ E +++ ++G D ELQ Sbjct: 121 SNTLSQEKSFILPLPWDINGQRNLVKNNLERLNLKMNYETIDLIVESIGNDSSLINTELQ 180 Query: 190 KLSSYCL---------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 KLS + + I+++ VK +I + + EI N+ ++G+ A+ Sbjct: 181 KLSLFSEAVNTNLTTDKPREISKELVKKLIQNNSTNAL-EIANSLLKGEKIIALNKIQSL 239 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQE 296 L + P+ L+ + + +H++ N ++I + K I +++ I + Sbjct: 240 LKNGEPALRLITTLTGQSRGWLWVHLLDSQGNQDVKEIAKLAGIANPKRIFVIRKQIQGK 299 Query: 297 SL 298 SL Sbjct: 300 SL 301 >gi|294637505|ref|ZP_06715791.1| DNA polymerase III, delta subunit [Edwardsiella tarda ATCC 23685] gi|291089337|gb|EFE21898.1| DNA polymerase III, delta subunit [Edwardsiella tarda ATCC 23685] Length = 344 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 96/298 (32%), Gaps = 17/298 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + G++ LI E ++ ++ D V L+ + +++ S SLF+ + Sbjct: 21 YFILGNEPLLIQESLDLIQQRARTLGFDEHYSVTLDPHT---DWEALFSQSQSLSLFASR 77 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF------TSV 137 +I+ + + V + E + + + R Sbjct: 78 QILTL--TLPDNGVNAAMGERLTQLAGLLHPDLLLLLRGPR-PTRAQENAAWYKQLSAQA 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ISC + L + Q + + A Q+L G+ +A L +L+ Sbjct: 135 TLISCQTPEQAQLPRWVANRARQMQLQLDEAALQLLCYCYEGNLLALAQALGRLAL-LYP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + + A + LL ++ Sbjct: 194 DGRLTLPRVEQAVNDAAHFSPFHWVDACLAARAKRAWHILSQLRQEGCEPVVLLRTVQRE 253 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 L + + + + + + + +R +L ++L+ + + + + Sbjct: 254 V--LLLLQLKRASQQTPLRTLFDRHK--VWQNRRPLLTQALQNLALPQLYQAVALLSQ 307 >gi|323967587|gb|EGB63003.1| DNA polymerase III [Escherichia coli M863] gi|327254324|gb|EGE65946.1| DNA polymerase III, delta subunit [Escherichia coli STEC_7v] Length = 343 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 99/266 (37%), Gaps = 8/266 (3%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117 +++ + + ++ + SLF+ ++ ++L+ + + L + + +++++ Sbjct: 54 SIDPNTDWNAVFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLVVR 113 Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N++ K + ++C + L + + A Q+L Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ E Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ +R+ + + ++ Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314 >gi|187478982|ref|YP_787006.1| DNA polymerase III subunit delta [Bordetella avium 197N] gi|115423568|emb|CAJ50104.1| DNA polymerase III, delta subunit [Bordetella avium 197N] Length = 349 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 14/285 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G + L+ E + + + + +V++A + + S + SLF Sbjct: 22 LYTLSGDEPLLVIEAGDALRAAARQAGYTDRTTLVMDA---RGDWSAVLAATQTVSLFGD 78 Query: 83 KKI--ILIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 + + I I K D L + + ++++ + + K A Sbjct: 79 RSLLEIKIPTGKPGKTGADTLIRLAEQAGRQTQAETLVVVSLPRLDRATRESKWALALAR 138 Query: 137 VLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I+ P + L I L + + Q + + G+ +A+ E+ KL Sbjct: 139 SGVIAEIPTIERARLPAWIGARLARQNQRVDGATLQWMADKVEGNLLAAHQEILKLGL-L 197 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + + V+ + + + + +A + G I + + D A +L Sbjct: 198 YPEGELAADDVERAVLNVARYDVFGLRDAMLAGDIGRTVRMLDGLRAEGEALPLVLWAVG 257 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ++ +LL +I ++++ I + ++L Sbjct: 258 EEIRLLARI-AQARQQKQDVGALMRRLR--IFGAHERLALQALGR 299 >gi|226952883|ref|ZP_03823347.1| DNA polymerase III delta subunit [Acinetobacter sp. ATCC 27244] gi|294649287|ref|ZP_06726722.1| DNA polymerase III delta subunit [Acinetobacter haemolyticus ATCC 19194] gi|226836394|gb|EEH68777.1| DNA polymerase III delta subunit [Acinetobacter sp. ATCC 27244] gi|292824840|gb|EFF83608.1| DNA polymerase III delta subunit [Acinetobacter haemolyticus ATCC 19194] Length = 331 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 132/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + +N + Sbjct: 10 KRVAEARGAWIMHGQEPLLEQNLLDAFRKSWQEQ---EVERQRYDISS-ANDWKNVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + + L+ I N N ++I+ S+ +K + + Sbjct: 66 NSLSLFSQQLAIEVHGNVKPDANGIKQLKSYIQHNEHNLLLIVLPKQDSSSLK--SAFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E V+ + + YP ++ ++ + E L ++ +A Q L+ + + +A++N L Sbjct: 124 VVEANGVVVPLTANYPQDRQRILTIEAEKL---GIQLNNDAWQWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +++ + I + + + D ++ +A + G + ++ + + +A+ P Sbjct: 181 MRVADTFPDIQQIQIEQLYACLQDQSRYTTYDLSDALLLGNLAQSVKIYQYLIAAGEPDS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306 +L ++ +LL ++ FE+ + I K + Q++LR N Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNAIQLGIWKTKVSQYQQALRRLNPRQFLT 290 Query: 307 -RETLHKIDHRIH 318 + L +ID I Sbjct: 291 WSDLLLRIDAAIK 303 >gi|223986214|ref|ZP_03636232.1| hypothetical protein HOLDEFILI_03542 [Holdemania filiformis DSM 12042] gi|223961828|gb|EEF66322.1| hypothetical protein HOLDEFILI_03542 [Holdemania filiformis DSM 12042] Length = 279 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 107/286 (37%), Gaps = 18/286 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YGS+ + + + + VV A + + + F++K Sbjct: 3 YLLYGSET-YRLKKKLDELLKANDPENTGMNTVVYEAGNADFQLRAVLEDAWTIPFFAEK 61 Query: 84 KIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKF 134 K +++ N S +K LE+ + + + +I + + + L K+A Sbjct: 62 KTVVVRNPVFLTTSGSLNEKDGKALEDYLNHSCPSTDLIFCGEFESLDQRKKLVKLA--V 119 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + ++ + + L Q +S+EA L+ L D + EL KL+ + Sbjct: 120 KTCRVFTMKRLDEREFRSYVNQQLSAHQLILSREAMDELMQRLPLDLESFHQELIKLTLF 179 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 I+ + ++ + ++NA I + A+ L + L+ Sbjct: 180 ---GTKISRDDIVHLVSRPLDEDVFHLVNAVITHDLKQAMHLWHDLDSLNKDPIYLVALL 236 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +F+L+ ++ ++ + +S I Q+ + + P + E++ Sbjct: 237 ASQFRLMAQVRMLSDR-RMSESMIAQQLK--VHPFRVKKAHEAVAR 279 >gi|265753570|ref|ZP_06088925.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_33FAA] gi|263235284|gb|EEZ20808.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_33FAA] Length = 338 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 123/334 (36%), Gaps = 15/334 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I + KN + V+ G + I + + + F+ ++ Sbjct: 1 MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++++ K + + L + K + + I+++ K Sbjct: 60 ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELAYYLQKPLDSTILVLCHKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L AE + L I L I +A +++ +G Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL E IT + ++ I + E+ NA + ++ A + Sbjct: 175 ADLSRMAGELEKLIITLPREQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234 Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 +F + K + L F L + + + S + I + ++ + Sbjct: 235 KYFEENPKTNPLQMTLSVL--FNLFSNLMLAYYAPDKSEQGIANQLGLKSPWQSKDYMA- 291 Query: 297 SLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328 ++R ++ V + + +I + ++ LE Sbjct: 292 AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLED 325 >gi|212693177|ref|ZP_03301305.1| hypothetical protein BACDOR_02684 [Bacteroides dorei DSM 17855] gi|237709918|ref|ZP_04540399.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725413|ref|ZP_04555894.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212664282|gb|EEB24854.1| hypothetical protein BACDOR_02684 [Bacteroides dorei DSM 17855] gi|229436100|gb|EEO46177.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456011|gb|EEO61732.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 338 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 119/335 (35%), Gaps = 17/335 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I + KN + V+ G + I + + + F+ ++ Sbjct: 1 MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +I+T N + SK ++++++ K + + L + K + + I+++ K Sbjct: 60 ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELAYYLQKPLDSTILVLCHKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + L AE + L I L I +A +++ +G Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL E IT + ++ I + E+ NA + ++ A + Sbjct: 175 ADLSRMAGELEKLIITLPREQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + + S + ++ + Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPDKSEQGIANQLGLKSP---WQSKDYMA 291 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328 ++R ++ V + + +I + ++ LE Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLED 325 >gi|149371264|ref|ZP_01890750.1| hypothetical protein SCB49_10237 [unidentified eubacterium SCB49] gi|149355402|gb|EDM43961.1| hypothetical protein SCB49_10237 [unidentified eubacterium SCB49] Length = 335 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 22/304 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + + +N+ F+ VVL ++ I + + Sbjct: 20 PIYFLMGEEPYYIDAISDFIAENVLTEDERGFNQVVLYGRDVS--IDDIVGNAKRYPMMA 77 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K+++++ + ++ L ++++ K ++ L K +K + + Sbjct: 78 EKQVVIVREAQDLSRTIENLVAYAENPQPTTVLVMCYKYKKLDARKKLSKTLKKNSVLFE 137 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 DN+ + + I + L +I+ +A Q+L+ LG D NEL+KL Sbjct: 138 SKKLYDNQ--VPNWITKVLQGKGHTITPKAAQMLVEFLGNDLGKVNNELEKLLVIIKPGE 195 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK-- 257 +T Q ++ I + E+ NA A + +F + +L L Sbjct: 196 QVTPQVIERNIGISKDFNNFELQNALGARDYKKAYRIVTYFSQNPKDHPLVLTVSLLYSF 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F L K H + SN + + L+ + + + K+ I Sbjct: 256 FSKLLKYHSL---SNKAEAAKVLGVNPYF-----------LKDYQQAAANYPMKKVSAII 301 Query: 318 HLAR 321 L R Sbjct: 302 ALIR 305 >gi|302551351|ref|ZP_07303693.1| DNA polymerase III, delta subunit [Streptomyces viridochromogenes DSM 40736] gi|302468969|gb|EFL32062.1| DNA polymerase III, delta subunit [Streptomyces viridochromogenes DSM 40736] Length = 336 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 114/340 (33%), Gaps = 14/340 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + T N V + G ++ L+ + Q + + L ++Q T Sbjct: 8 MARKTANDDPLAPVTLAVGQEE-LLLDRAVQEVVAAAKAADADTDVRDLTPDQLQ--PGT 64 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + ++++ + K L Sbjct: 65 LA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKAYLGAPAEEITLVLLHAGGAKGKGLL 123 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + +A L + +S + EA Q L+ +G D + Sbjct: 124 DAARKAGAREVACPKMTKPADRLAF-VRGEFRAVGRSATPEACQALVDAIGSDLRELASA 182 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L + I E V + + ++G+ A+ + LA+ + Sbjct: 183 VSQLV--ADIEGTIDEAIVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 240 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + Q + I + + ++ P K + +++ +R W + V Sbjct: 241 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 295 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L + + + + + ++ IA+ A Sbjct: 296 VALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRGR 335 >gi|78211627|ref|YP_380406.1| DNA polymerase III subunit delta [Synechococcus sp. CC9605] gi|78196086|gb|ABB33851.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9605] Length = 321 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 108/321 (33%), Gaps = 21/321 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D IN + +L L+ + + + E + + Sbjct: 2 PIHLLWGDDAAARDRAINALIGQVVDPSWSSLNLSRLDGADAGQALQAL-EEARTPPFAT 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++++L++ ++ D E + + +++ + K + LR + Sbjct: 61 GERLVLLQRSPFCNGCPSELADRFEAALELIPDSSHLVLVNPA-KPDGRLRTTKALQKRI 119 Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + + D L+ + + +A L+ +G D +EL Sbjct: 120 KSGIDQEQSFPLPAAWDGNGQ-RQLVRRTAEALALKVEPDAIDALVEAIGTDSARLESEL 178 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KLS +D I+ V++++ + + +A ++G AI D + + P+ Sbjct: 179 RKLSL---QDTSISAARVQELVGGRSTNAL-AVGDALLEGNPGEAIARWDALIEAGEPAL 234 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + + + ++++ I + P + ++++ L+ Sbjct: 235 RIVATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKKLQGRPTKRFLS 293 Query: 309 TLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 294 LLGRLLEVEARLKRGAQPGDA 314 >gi|311741304|ref|ZP_07715128.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303474|gb|EFQ79553.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 325 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 54/338 (15%), Positives = 113/338 (33%), Gaps = 34/338 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPF----SLVVLNALEIQKNISTFWNEINST 77 V + G D+ L E + + P L L A E+ + E S Sbjct: 6 PVHLILGDDEFL-TERARLQIQRAAAEESGPTGARPELTKLKASEVSEGE---ILEATSP 61 Query: 78 SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN-------N 125 SLF ++I+I + K+V+D + ++I + +KK Sbjct: 62 SLFGDNRVIVISDCERAGKEVVDIILRACANPAPGMTMVIIYSVTAKTLKKKKKQPELVA 121 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 LRKIAE S YP+ L + + +L +G D Sbjct: 122 KLRKIAEVHE---VFSLYPNE---LGQWATREFSSHGVRPTPDVIHAVLEGVGSDLRELA 175 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 + + +L S + +T + V++ + +I +A + G++ A+ L Sbjct: 176 SAISQLVSDTGGN--VTREAVQNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGA 233 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 A+ K + +++ + + ++ M + + R W+ + Sbjct: 234 SPVAIAAALANKVGAVARLYSARGDQYSLASQT--GLAPYVVKMTQPVA----RRWSADN 287 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 V + + + + + + I + +A+ A Sbjct: 288 VTKAVILVSELDAAVKGQGGEPEFAIEAAVKRVAELAR 325 >gi|282854159|ref|ZP_06263496.1| DNA polymerase III, delta subunit [Propionibacterium acnes J139] gi|282583612|gb|EFB88992.1| DNA polymerase III, delta subunit [Propionibacterium acnes J139] gi|314923140|gb|EFS86971.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL001PA1] gi|314966908|gb|EFT11007.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL082PA2] gi|314981250|gb|EFT25344.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL110PA3] gi|315091819|gb|EFT63795.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL110PA4] gi|315093174|gb|EFT65150.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL060PA1] gi|315105527|gb|EFT77503.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL030PA1] gi|327327730|gb|EGE69506.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL103PA1] Length = 340 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 121/328 (36%), Gaps = 21/328 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L+ + + + LV L E+ + F E SLFS+ Sbjct: 27 ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136 I+++ +S +K + D + +I++ +K L K+ E Sbjct: 83 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 142 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + D I G + ++A L LG D + +L+S Sbjct: 143 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 195 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 196 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 256 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 311 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L + A + Sbjct: 312 CDAAVKGAAVDPDYALESMLIAIEEARQ 339 >gi|119470850|ref|ZP_01613461.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Alteromonadales bacterium TW-7] gi|119446077|gb|EAW27356.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase [Alteromonadales bacterium TW-7] Length = 345 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 98/245 (40%), Gaps = 11/245 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + + + + D ++ + Q+ I+ + S SLF Sbjct: 18 PFYLVFGEEPFQEAQCVQLIRDTAKAQGFDEVIKFTLMQGFDWQEIIAQY----QSMSLF 73 Query: 81 SKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 S + II +L+ +K + + + ++ + I+IIK + + + Sbjct: 74 SARTIIEF-DLNQQKPGVIGSNTFKRVVELVNPDTILIIKGAKASQEVQRGAWFKALDKQ 132 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + CYP H+ ++E ++ +AK L+ G+ +A EL+KLS Sbjct: 133 GVFVPCYPLTGSHVKRWLDEQCQRLALNMQNDAKLSLINATEGNLLACFQELEKLSL-LH 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + LIT+Q V + + I ++ +A + G AI + + + ++L + Sbjct: 192 GNALITQQLVMQGLLNQAKFDIFDLSDALLNGHAKQAIKVLNKLASDNTEVVSILWAITK 251 Query: 257 KFQLL 261 + L Sbjct: 252 ELNTL 256 >gi|322514588|ref|ZP_08067621.1| DNA-directed DNA polymerase III delta subunit [Actinobacillus ureae ATCC 25976] gi|322119527|gb|EFX91614.1| DNA-directed DNA polymerase III delta subunit [Actinobacillus ureae ATCC 25976] Length = 341 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 11/263 (4%) Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + S LF ++II++ + + + E+ + + ++I+ + K + Sbjct: 64 LFEAAQSNGLFFNRQIIILNLPEAPTASQMKNVAELCRFSHADLLLILCLPKFSKAMEKQ 123 Query: 129 KIAEKFTSVLAIS--CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 I C L + + I EA Q+L + G+ +A + Sbjct: 124 AWF-TQIEAQTIQVNCQTPEIAKLPTWLSHRAKAMELQIEPEAVQLLCYSYEGNLLALKQ 182 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 LQ L D I+ K+++ + I+A ++GKI A + ++ Sbjct: 183 VLQMLQLR-FNDGKISLARAKEVVEQAAQFSPFQWIDALLEGKITRAERILKHLQNEEVQ 241 Query: 247 SHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRI 300 LL ++ LLE + N + + + +R Q +L+ Sbjct: 242 PVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQTALQR 301 Query: 301 WNKNLVRETLHKIDHRIHLARKK 323 + + + ++ +++ Sbjct: 302 LTYKKLYQLIQRLAELEKQVKQE 324 >gi|325279373|ref|YP_004251915.1| DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM 20712] gi|324311182|gb|ADY31735.1| DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM 20712] Length = 336 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 14/276 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I L + + F+ VL ++ ST + + S Sbjct: 17 PIYFLCGEEPFFIDRLTALLENTVLTEDEKAFNQTVLYGNDVSM--STITDTARRFPMMS 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++++++ + D L I + N I++ + + KK + + + +K + Sbjct: 75 ERQVVIVREAQNIRDF-DNLLPYI-DHYQNSTILVLAYKNKKPDKRKGVFKKLGN--TPH 130 Query: 142 C-YPDNKIHLMDLIEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 C Y ++ + I E + I+ +A IL +LG D NE+ KL Sbjct: 131 CIYFESAKLYDNKIPEWIIGYCKEKSYGITTKAAGILAESLGTDLSRVANEIDKLVLLLP 190 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254 + I E V++ + E+++A I+ A + ++F A+ P + Sbjct: 191 QGGEIQESLVEEHTGISKDFNSFELLSAIIRKDFLKANQIVNYFEANPKNNPLVLTITTL 250 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + F L H K+ + +++ + + MK Sbjct: 251 FRYFLNLLTYHYQKKT-TPNTQEMARLLGVHPFFMK 285 >gi|312129764|ref|YP_003997104.1| DNA polymerase iii, delta subunit [Leadbetterella byssophila DSM 17132] gi|311906310|gb|ADQ16751.1| DNA polymerase III, delta subunit [Leadbetterella byssophila DSM 17132] Length = 337 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 117/317 (36%), Gaps = 19/317 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G++ I + + + + F+ VL ++ N + + Sbjct: 17 PLYFLHGTEPYYIDLMAEKLLEVTVPDFEKGFNEYVLYGKDVST--GDVLNVARKFPMMA 74 Query: 82 KKKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKFT 135 +++++L++ +K+ LE + + ++++ + T K Sbjct: 75 ERQLVLVKEAHAITDLGQKEGQARLEAYAKNPLTSTVLVLCFGKPQDERKTWVKAFAGKG 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + D++ + + I E IS +A Q+L +LG + A E++KL Sbjct: 135 ELHHFKKMYDSE--VPEFISELCKEENLKISPKAIQLLSEHLGNNPQAISKEIEKLKINL 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA-SKMPSHAL-LHG 253 E I ++ + + + E+ A I ++ A +A +F + SK + + Sbjct: 193 QEGETIDADIIEKYVGVSKEFNVFELQKALIDKQVTKAFKIAHYFGSNSKDHPVTVNIIS 252 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 F + +H + + +I+ + + + ++ + +R+ + + Sbjct: 253 LYNFFSKVLLLHGLGGRPDAELSRILG--VNPYFLKD---YKRAAQNYSLSQLRKVIQAL 307 Query: 314 DHRIHLARKKKYLEKNI 330 R+ AR K NI Sbjct: 308 --RLADARSKGVDAGNI 322 >gi|302545459|ref|ZP_07297801.1| DNA polymerase III, delta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302463077|gb|EFL26170.1| DNA polymerase III, delta subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 104/300 (34%), Gaps = 12/300 (4%) Query: 50 HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKN 108 + L +Q T E+ S SLF+++K++++ + + ++ + Sbjct: 46 DPDTDVRDLTPDALQ--PGTLA-ELTSPSLFAERKVVVVRSAQDLSADTIKDVKGYLGAP 102 Query: 109 ICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 ++++ + K L + +A L + +S + Sbjct: 103 AEEITLVLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRTSGRSATP 161 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 EA Q L+ ++G D + + +L+ + I E V + + ++ Sbjct: 162 EACQALVDSIGSDLRELASAVSQLA--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVE 219 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 G+ A+ + +++ + + Q + + K+ + ++ Sbjct: 220 GRAAEALEALRWAMSTGVAPVLITSALAQGVRAIGKL--ASAPRGARPGDLARELGMP-- 275 Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 P K + +++ +R W+ + V L + + + + + ++ IA+ A + Sbjct: 276 PWKIDRVRQQMRGWSADGVSIALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARAGRS 335 >gi|288927504|ref|ZP_06421351.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330338|gb|EFC68922.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 342 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 101/257 (39%), Gaps = 10/257 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + I ++ + ++ + F+ +L ++ + + + ++ Sbjct: 25 VYVLMGEESYYIDKIASLLEETVLQPQERDFNQDILFGVDTNG--VQVADLCKAYPMMAE 82 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140 +++++++ K ++D L + + + I+++ K+ I + L +A + + Sbjct: 83 RRLVMVKEAQNLK-LVDALAKYLENPVQTTILVLCHKNGTIDRRKKL--LARAESMGVVF 139 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLEDI 199 L I+ L + ++ +A ++ ++G D +EL K L S D+ Sbjct: 140 ESKKKRDYELPAFIKGYLATKKATVEDKAAIMIAEHIGADLNRLTSELDKVLISLPENDL 199 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT V+ I + E+ NA + ++ A + +F + A L Sbjct: 200 RITPDIVERQIGVSKEFNGFELRNAIVSRDVFKANQIIQYFDKNPKAGSIFAFLPLLFSF 259 Query: 258 FQLLEKIHIIKECSNIS 274 FQ L + +N + Sbjct: 260 FQNLLIAYYAPNKNNET 276 >gi|61657477|emb|CAI44389.1| hypothetical protein [Thermotoga sp. KOL6] Length = 325 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 80/212 (37%), Gaps = 17/212 (8%) Query: 65 KNISTFW---NEINSTSLFSKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNE 120 + + IN+ ++FS K +I I + + K E++ + I ++S Sbjct: 36 DDPDKLNFIKSVINTKTIFSGKTVIDIVDFDSWKAQDQKRFLELVKNVPPDVYIFVRS-- 93 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +K EK ++ + + ++ IE I+K+A Q+ + +G + Sbjct: 94 -------QKTKEKGVTLDLPKPWETD--KWLEWIERRFRENGLKITKDALQLFFSKVGTN 144 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + E++KL +Y + +T + V++++ +E A +GK A L Sbjct: 145 DLLVEREIEKLKAYS-DTGEVTAEDVEEVVFTYQTPGYDEFCFAVSEGKRKLAHALLSQL 203 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 + + F L K+ ++ Sbjct: 204 WK-TTEPVVIAAALVNHFLDLFKLVVLVTRKR 234 >gi|307244336|ref|ZP_07526450.1| DNA polymerase III, delta subunit [Peptostreptococcus stomatis DSM 17678] gi|306492302|gb|EFM64341.1| DNA polymerase III, delta subunit [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 133/331 (40%), Gaps = 28/331 (8%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + + + YG + LI L++ F+ + D F+L +++ E N+ + + I + + Sbjct: 16 NKINLVYGRELLLIDNLVDAFRDLAKDSMPD-FNLTIIDGQET--NLESMVSAIETLPMM 72 Query: 81 SKKKIILIENL----STEKKVLDCLEE---IIIKNICNHIIIIKS--NEI-KKNNTLRKI 130 S K+ +L+++ + + D E II+++ + +++ + +I K + L K Sbjct: 73 SDKRYVLVKDFELFQTKRRFFNDEAESELIRIIEDMPDTALVLFASYGDIDTKKSRLYKA 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIAS----- 184 K VL + + + L +E+ Q + + +G D+ +S Sbjct: 133 VSKLGDVLVMD--KLDDMDLFKWCKEAFEKNQIRANNSELVYFIDLVGYKDKKSSVTLAD 190 Query: 185 -RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 +NE+ K+S+Y + + ++ + ++ + + ++I+ A+ L D + Sbjct: 191 LKNEIDKISAYLGKGNSLDKESIDRLLTNNIEDNVFKMIDMIGSKNTKMALNLFDDMIYR 250 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 +F + +I +++ S +SF+ I + + L + +++ Sbjct: 251 GGSILGTFSLLSARFSQILQIKALQD-SRVSFDTIKNTMGLQKFVLNK--LTSQAKNFDE 307 Query: 304 NLVRETLHKIDH---RIHLARKKKYLEKNII 331 +R + I I + L I+ Sbjct: 308 ESIRAIIKSISDFDYAIKQGKMSDRLAAEIL 338 >gi|296160451|ref|ZP_06843267.1| DNA polymerase III, delta subunit [Burkholderia sp. Ch1-1] gi|295889200|gb|EFG69002.1| DNA polymerase III, delta subunit [Burkholderia sp. Ch1-1] Length = 372 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 109/296 (36%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG + L E ++ + S+ + + S+ S SLF Sbjct: 19 LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++++ I + K+ D L+ + + + +I + + +A Sbjct: 76 RQLVELRIPSGKPGKEGADALKALAAAVNEDVLTMITLPRLDAATQKSAWFTSLSDAGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V+D + + + ++ A + G + + D + +L Sbjct: 195 LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ + + L Sbjct: 255 VEEVRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVSEGTLEKAL 307 >gi|291544165|emb|CBL17274.1| DNA polymerase III, delta subunit [Ruminococcus sp. 18P13] Length = 342 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/326 (12%), Positives = 103/326 (31%), Gaps = 26/326 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG D + + K + + + ++ ++ + + S+F++ Sbjct: 21 LYYLYGKDVAGVAAFTKRLIKKLDGD------VQKYDGRDL--DLEQLADAVGQYSMFAQ 72 Query: 83 KKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIK--------SNEIKKNNTLRKIAE 132 +ILI + E D ++ + +++ ++I + +K+ + Sbjct: 73 TNVILINDPPAEDWSADRIQSFLKCLEDVPPSTVVICNVTGFDVCGGKKAPTPKHKKLID 132 Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + L+ + E S+S++ + + D + NEL KL Sbjct: 133 FFGKHGVVCNFEAKTAAQLVKPMMERASRSGCSLSRQNAEQIAQLCLCDTMRIGNELDKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 +Y IT + + ++ L + A A+ D + LL Sbjct: 193 CAYAEG-GEITGEAISMLVAREDSLNAFALARAVTARNGRAAMEALDILSQQRNEPVMLL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE--- 308 F L + + + K +N +++ + + +R Sbjct: 252 SAITSAFLDLYRAKAAQAAGKHHEHVLEDFLYKGREFAVKNAFRDAGKS-SLEQMRACIL 310 Query: 309 TLHKIDHRIHLARKKK--YLEKNIIF 332 L D + R +E+ I Sbjct: 311 ILRDTDAALKSTRLDGRILIEEAITR 336 >gi|124021798|ref|YP_001016105.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9303] gi|123962084|gb|ABM76840.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9303] Length = 336 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 114/333 (34%), Gaps = 32/333 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + +F+G D I ++ + +L L+ + S E + S Sbjct: 2 PIHLFWGDDAAARDHAIETLIGDVVDQAWNSINLSRLDGAD-AGQASQALTEARTPPFGS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII-----------KSNEIKKNNT 126 +++L++ + ++ + E+++ +++ + ++K Sbjct: 61 GGRLVLLQRSPFCNACPSELANRFEDVLDLIPETSHLVLCNPNKPDGRLRTTKALQKLVK 120 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L++ +EK + AI + +L+E + + EA L+ +G D Sbjct: 121 LKQASEKSFLLPAIW----DGAGQQELVERTARDLGLQLEPEATTALVEAIGNDSTRLNA 176 Query: 187 ELQKLSSYCLEDIL----------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 ELQKL+ + I ++V +I ++ + ++ + G AI Sbjct: 177 ELQKLALHAEIRQENATANQSPTLIKAENVAALIEGMATNALQ-VGDSLLAGHAGEAIAR 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D L + P+ ++ + + + ++++ I + P + ++++ Sbjct: 236 LDALLDAGEPALRIVATLTGQIRGWLWVSLLEQQGERDVNVIAKAAGIG-NPKRIYVMRK 294 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329 L+ L ++ ++ Sbjct: 295 QLQGRPPQRFLTLLSRLLEVEAALKRGAIPTDA 327 >gi|262374951|ref|ZP_06068185.1| DNA polymerase III, delta subunit [Acinetobacter lwoffii SH145] gi|262309964|gb|EEY91093.1| DNA polymerase III, delta subunit [Acinetobacter lwoffii SH145] Length = 328 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 132/313 (42%), Gaps = 28/313 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + ++ +G + L LI+ F+ + + + + T +N + Sbjct: 10 KRVDEARGAWVLHGQEPLLEQNLIDAFRASWQKQ---DIERQRYDISSV-ADWKTVFNAL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS + I + N+ + + L+ + N N ++++ SN +K ++ + Sbjct: 66 NSLSLFSTQLAIEVHGNIKPDASAIKLLKNYLQHNEQNLLLVVMPKQDSNSLK--SSFFQ 123 Query: 130 IAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + + +V ++ YP ++ ++ + E L ++ +A Q L + + +A++N L Sbjct: 124 LIDANGVNVSLVANYPKDRQQILGIEAEKL---GIRLANDAWQWLEQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++S E +I H+ + D ++ +A +QG + +I + + + S P Sbjct: 181 MRVSDTFAEVDIIQVDHLYACLQDQSRYSTYDLSDALLQGNLSQSIKIFQYLVVSGEPMS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L ++ +LL ++ FE+ + I K + Q++LR + Sbjct: 241 LILWSLSKEMRLLMQL----------FEQPQNALQIGIWKTKVGLYQQALRRLSPQTFLA 290 Query: 309 ---TLHKIDHRIH 318 L +ID I Sbjct: 291 WPGLLLRIDASIK 303 >gi|329959984|ref|ZP_08298480.1| DNA polymerase III, delta subunit [Bacteroides fluxus YIT 12057] gi|328533118|gb|EGF59887.1| DNA polymerase III, delta subunit [Bacteroides fluxus YIT 12057] Length = 339 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L ++ ++ +I+T N + Sbjct: 21 RPVYYLMGEEAYYIDLIADYIADNVLTDTEKEFNLSIVYGADV--DIATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + D L + + + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQSIRNM-DELSYYLQRPLNSTILVICHKHGVLDRRKKL--AAEIEKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPAFITSYMKRKGVDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 IT + ++ I + E+ A ++ + A + +F + P L Sbjct: 196 QTRITPEQIERNIGISKDYNNFELRGAIVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E S + R L ++R ++ + + +I + Sbjct: 256 GFFSNLMLAYYAPEKSEQGIANFLGLKSP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L +I+ + + I Sbjct: 312 ADAKSKGVGNSSLNDGDILRELVFKI 337 >gi|315187287|gb|EFU21043.1| DNA polymerase III, delta subunit [Spirochaeta thermophila DSM 6578] Length = 326 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 131/328 (39%), Gaps = 14/328 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F G + GL E + K++++ T+ ++ + + S + + SLF + Sbjct: 7 IFFLLGPETGLKEEYLQTLKQDLTKTHG---AIEEEHLYAFEDTFSDVLPRLQNASLFGE 63 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++LI N L + +N + ++I S+EI+ L K+A T + Sbjct: 64 HTLLLIHNAERLSTQDQNLLGLYAQNPSPSSTLVILSDEIRLPQRLEKLASHHTREVFWE 123 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 D K +I ++L +SI +A ++ L + A E +L+ + E I Sbjct: 124 LREDQK---ARMIHQTLRRSGRSIEPDAVELFLQMVSPVSSALIEEASRLAFFFPEGHTI 180 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 TE++++ + + + + + + A+ L+ H ++ G L +F+ L Sbjct: 181 TEKNIERFLFHSREENVFTLFAHLARRDLEAALECTSALLSQAEAVHQIIGGLLWQFKRL 240 Query: 262 EK-IHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + ++KE E+ +++ + + + ++ +LR + + + ++ Sbjct: 241 LMVMRLLKERYGR--EEALREAGIRGMGFKRT--METALRNYTLEETQRAIVELVSCDEQ 296 Query: 320 ARK-KKYLEKNIIFQTILYIAQTACKNN 346 R ++ L I T+ I + Sbjct: 297 VRLHRRELHPLIFTLTLHRIVRHPRAAR 324 >gi|294629294|ref|ZP_06707854.1| DNA polymerase III, delta subunit [Streptomyces sp. e14] gi|292832627|gb|EFF90976.1| DNA polymerase III, delta subunit [Streptomyces sp. e14] Length = 339 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 113/340 (33%), Gaps = 14/340 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + T N V + G + L+ + Q + + L ++Q T Sbjct: 11 MARKTANDDPLAPVTLAVGQED-LLLDRAVQEVVAAARAADADTDVRDLTPDQLQ--PGT 67 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + ++++ + K L Sbjct: 68 LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKGYLGAPAEEITLVLLHAGGAKGKGLL 126 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + +A L + +S + EA Q L+ +G D + Sbjct: 127 DAARKAGAREVACPKMTKPADRLAF-VRGEFRALGRSATPEACQALVDAIGSDLRELASA 185 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L + I E V + + ++G+ A+ + LA+ + Sbjct: 186 VSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 243 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + Q + I + + ++ P K + +++ +R W + V Sbjct: 244 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 298 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L + + + + + ++ IA+ A Sbjct: 299 VALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRGR 338 >gi|256847008|ref|ZP_05552454.1| DNA polymerase III, delta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715672|gb|EEU30647.1| DNA polymerase III, delta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 342 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 119/338 (35%), Gaps = 21/338 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + V++ G+ ++ E F N+ ++ + E +++ST ++ S Sbjct: 14 AAAPVYLVLGTQSVMMAETRKAFL-NLVPKEERVMNVGSYDLEE--ESLSTALDDAMSAP 70 Query: 79 LFSKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 F K++++ + K+ + L+ + + I++I + K + Sbjct: 71 FFGKRRLVFLNKPAFLTTGGEKGKMKQNPELLKNYLTHPQLSTILVIMAPYEKLDGRKGI 130 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + E + + N+ I+ + + A L+ D L+ Sbjct: 131 VKELKKEAVTVEVQLLNEQSARKNIQSQVSAAGFQFMQGALDELVKRTNADYSLMVANLK 190 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL +D IT VK ++ + + +++ + + ++ L L S+ Sbjct: 191 KLMILNYQDQEITVASVKKLVPQSLDSNVFDLVTTVLNHQQTQSLDLYRQLLDSEQQPLQ 250 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + +F+LL ++ I+ + N+ P + + + +R ++ + Sbjct: 251 INAVLVSQFRLLLQLKILSARG---LSQGTLAKRLNVHPYRVKLGLQMVRKFSLTDLMNA 307 Query: 310 ---LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L + + + + L + +L +Q K Sbjct: 308 YLGLIRCERALKTTSRSPEL---LFQLFMLQYSQQVRK 342 >gi|259909124|ref|YP_002649480.1| DNA polymerase III subunit delta [Erwinia pyrifoliae Ep1/96] gi|224964746|emb|CAX56263.1| DNA polymerase III, delta subunit [Erwinia pyrifoliae Ep1/96] gi|283479152|emb|CAY75068.1| holA [Erwinia pyrifoliae DSM 12163] Length = 343 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 105/292 (35%), Gaps = 15/292 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ GS+ L+ E + + F+ V ALE + ++ + SLF+ + Sbjct: 21 YLLSGSEPLLLQEAQDAIRAAAQQQG---FTEHVSVALETGTDWQEIFSTCQALSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138 + +L+ + + L + + ++I+++ + K N+ K + + Sbjct: 78 QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRAARLTKAQENSAWYKAL--SANAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + C L + ++ A Q+L G+ +A L++LS D Sbjct: 136 VVPCQTSEHGQLPRWVTIRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + D ++A + GK A+ + A + LL + Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDIEPVILLRTLQRDL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 LL + ++ + + + +R + E+L+ + + + Sbjct: 255 LLLLTLQRQM--AHTPARTLFDQHR--VWQNRRALFSEALQRLTAAQLAQAI 302 >gi|61657530|emb|CAI44441.1| hypothetical protein [Thermotoga sp. RQ2] Length = 329 Score = 75.0 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G + K + + + + + I + + + ++FS K II I N Sbjct: 12 TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 68 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 K L E++ + I I R V P Sbjct: 69 FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 117 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 ++ IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V+++ Sbjct: 118 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 176 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A +GK A L + F L KI ++ Sbjct: 177 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 235 Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 ++ ++ + + L + W ++ L+ Sbjct: 236 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 280 >gi|315103322|gb|EFT75298.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL050PA2] Length = 340 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 120/328 (36%), Gaps = 21/328 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L + + + LV L E+ + F E SLFS+ Sbjct: 27 ALLVQGAEA-LFSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136 I+++ +S +K + D + +I++ +K L K+ E Sbjct: 83 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 142 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + D I G + ++A L LG D + +L+S Sbjct: 143 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 195 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 196 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 256 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 311 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L + A + Sbjct: 312 CDAAVKGAAVDPDYALESMLIAIEEARQ 339 >gi|237713200|ref|ZP_04543681.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406661|ref|ZP_06083210.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_22] gi|294643455|ref|ZP_06721269.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CC 2a] gi|298484012|ref|ZP_07002181.1| DNA polymerase III, delta subunit [Bacteroides sp. D22] gi|229446667|gb|EEO52458.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355364|gb|EEZ04455.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_22] gi|292641203|gb|EFF59407.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CC 2a] gi|298269793|gb|EFI11385.1| DNA polymerase III, delta subunit [Bacteroides sp. D22] Length = 339 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPVYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATSMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLTYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + + +I+ + + I Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337 >gi|317405769|gb|EFV86060.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 352 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 107/309 (34%), Gaps = 16/309 (5%) Query: 1 MAT-IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLN 59 MA +++ + + ++ G + L+ E ++ + + +V++ Sbjct: 1 MAQPLDADRLADHLQRAGNRLAPLYTVSGDEPLLVTEAVDALRAAGRGAGYTERLSMVMD 60 Query: 60 ALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIK-----NICNH 112 A + + S S SLF ++I+ I K D L + + + + Sbjct: 61 A---RSDWSAVIAATQSVSLFGDRRILELKIPTGKPGKSGADTLARLAEQAEKQADNPDT 117 Query: 113 IIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 +I++ + K + + + + + L + + L + Q Sbjct: 118 LILVALPRLDKATRESRWMQALARGGMTVDIANVERGRLPAWVGQRLARQNQRTDNATLQ 177 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 + + G+ +A+ E+QKL + + + V+ + + + + +A + G I Sbjct: 178 WMADKVEGNLLAAHQEIQKLGL-LYPEGQLAPEDVERAVLNVARYDVFGLRDAMLAGDIA 236 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 I + D A +L ++ +LL ++ ++++ I Sbjct: 237 RTIRMIDGLRAEGEALPLVLWAVGEEIRLLARV-AEARSLGQDANGLMRRLR--IFGAHE 293 Query: 292 NILQESLRI 300 + ++L Sbjct: 294 RLALQALGR 302 >gi|227874459|ref|ZP_03992635.1| possible DNA-directed DNA polymerase III delta subunit [Oribacterium sinus F0268] gi|227839687|gb|EEJ50141.1| possible DNA-directed DNA polymerase III delta subunit [Oribacterium sinus F0268] Length = 364 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 112/317 (35%), Gaps = 12/317 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L+ F + S + +E + + + F+ Sbjct: 51 PLYLLYGEEDYLLSYYKKAFFQAFSEN-----EGINCMVVEELPPTDELISAVETLPFFA 105 Query: 82 KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++++ + S KK+ + + + + +++ ++ K ++L K+ L + Sbjct: 106 PYRLMVFQGKSSGRKKLSEEFIQYLKNSPKETVLLFIEEKVDKRSSLYKVV--KERGLCL 163 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 +C ++ L + L K I + +LL+ G N + Y ++ Sbjct: 164 ACMEQDQAFLQRFALQQLKKEGKKIRENVLGLLLSRSGSSLYRIVNACKNCVDYIGDEEE 223 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT++ V+ ++ + ++I A +G L + + + + + Sbjct: 224 ITQEAVEAVVEKLPEDRVFDLIEALGRGDQEKVFQYYGDLLRLEEKPAKIQNLIRKNVEK 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + E+ ++ R + ++ R + ++ ++ H + Sbjct: 284 LLVVREYLTEG--LREREMESRLSMDSWRVRKYIAQA-RTYTQSGLQSLFHSLLRLEEEN 340 Query: 321 RKKKYLEKNIIFQTILY 337 RK + ++ + +L Sbjct: 341 RK-GRISDSLALELLLA 356 >gi|288924783|ref|ZP_06418720.1| DNA polymerase III, delta subunit [Prevotella buccae D17] gi|288338570|gb|EFC76919.1| DNA polymerase III, delta subunit [Prevotella buccae D17] Length = 342 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 127/329 (38%), Gaps = 17/329 (5%) Query: 1 MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S ++L V++ G + I + + +N+ F+ +VL Sbjct: 1 MAEKKSGPSFDAIMRDLQARKFAPVYVLMGDESYYIDRITDYITENVLSPEERDFNQMVL 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116 + + + + S+ +I++++ + + + +E+ + K + + I+++ Sbjct: 61 FGADTTA--AQIADMARRYPMMSEYQIVVVKEAQNLRNL-EPIEKYLEKPVKSTILVLCH 117 Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 K+ + + +KI K +V + L IE L +I +A Q++ Sbjct: 118 KNGVLDRR---KKIFAKAQAVGVVFESRKLYDRELPPFIENYLKRKNVAIDPKATQMIAD 174 Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 ++G D +EL+K L S + +T + V+ I + E+ +A + ++ A Sbjct: 175 HIGADLNRLTSELEKVLISLPESNRRVTPEVVEREIGVSKDFNAFELRDAIVNRNVFKAN 234 Query: 235 MLADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + +F ++ ++ L FQ L + + + + R+ Sbjct: 235 QIIKYFDSNPKAGSIYSFLPLLFSYFQNLMIAYYAPKKQDADAVAKFLDLRNS--WAARD 292 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321 L +R ++ N + + K+ ++ Sbjct: 293 YLT-GMRNYSGNKTLQIIDKLREIDAKSK 320 >gi|297617829|ref|YP_003702988.1| DNA polymerase III subunit delta [Syntrophothermus lipocalidus DSM 12680] gi|297145666|gb|ADI02423.1| DNA polymerase III, delta subunit [Syntrophothermus lipocalidus DSM 12680] Length = 328 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 94/263 (35%), Gaps = 17/263 (6%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G + LI + Q + I + V + E+ ++ ++ ++ LF + Sbjct: 8 VLCGDEPYLIENRLKQIIEEIRNQIGEEPECVFKDGDELGEDE--LFDLLHFAPLFGYVR 65 Query: 85 IILI-----------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 ++++ + V L + + ++I+ + + + K+ +K Sbjct: 66 VLVLHWLPCLVSGGPKRSRKPSNVEQILLQYVGAPNPLQVLILITPSLPTESEFAKLLKK 125 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V I NK L ++ + + + + G D A N+++KL Sbjct: 126 QKMVEEIK--RLNKRELQSWVKSEFAQRGVEPEDKLVEEIAGS-GWDMSALENQVEKLCL 182 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 E ++ ++++ + I + +A + + A A P +L+ Sbjct: 183 -ASEKRRLSSAEAQELLDLREDVKIFALSDALLNRDLAAAYGTVSRLFAQGEPPGLILYT 241 Query: 254 FLQKFQLLEKIHIIKECSNISFE 276 ++F L+ + +K+ + E Sbjct: 242 LTKQFLLMAEAKALKQQGTTASE 264 >gi|75812744|ref|YP_320361.1| DNA polymerase III subunit delta [Anabaena variabilis ATCC 29413] gi|75705500|gb|ABA25172.1| DNA polymerase III, delta subunit [Anabaena variabilis ATCC 29413] Length = 319 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 109/261 (41%), Gaps = 20/261 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+++YG D + + I+ F+ + L+ E + + + E+ + Sbjct: 2 PVYLYYGEDTYSLNQKIDHLVNQNVHAEWKDFNYIKLSGNE-KNIAAKVFTEVMTLPFGE 60 Query: 82 KKKII------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN------TLRK 129 KI+ LI +LS E LE + + ++I++I SN+ K ++ T+ K Sbjct: 61 GNKIVHTDSDHLIGSLSNEDN-NQELENQLSRIPASNILLITSNK-KPDSRRTVVKTILK 118 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 A++ L + C+ +K +++LI + I Q + + L+ +G + +E Sbjct: 119 YAQQEEFPL-VPCW--DKKGIVNLIGKYAAIHQVKFTPDVTDYLVEAIGNNTARVDSEFA 175 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ Y + +I+ + +K ++ + + Y +++ A ++ AI D L S Sbjct: 176 KLAVYA-SEKIISLEEIKQLVSNHNTDY-QKLTIAMLRNHSNLAIAQVDKLLDSNEHPLK 233 Query: 250 LLHGFLQKFQLLEKIHIIKEC 270 ++ F+ E Sbjct: 234 IVATLTSFFRTWLITKAGVEA 254 >gi|322833896|ref|YP_004213923.1| DNA polymerase III, subunit delta [Rahnella sp. Y9602] gi|321169097|gb|ADW74796.1| DNA polymerase III, delta subunit [Rahnella sp. Y9602] Length = 346 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 110/302 (36%), Gaps = 11/302 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G+D L+ E + + +L+A + ++ + SLF+ + Sbjct: 21 YVLCGNDPLLLQESQDSIRHAAQQADFQEHYTYILDAHT---EWESIFSICQALSLFASR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + ++++ + + L ++ + +++++ ++ K + + + Sbjct: 78 QTLMLILPENGPTAPMAEQLLKLTTLLHDDILLLLRGTKLTKAQENSAWFKALSDKGVFV 137 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC + L + + + A Q+L G+ +A L++LS D Sbjct: 138 SCQTPEQAQLPRWVTRRAKELSLELDEPANQLLCYCYEGNLLALAQSLERLSL-LYPDGK 196 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T V++ + D ++A + GK A + LL ++ + Sbjct: 197 LTLPRVEEAVNDAAHFTPYHWLDALLAGKSKRAWHILRQLQQEDSEPVILLRTVQRELLM 256 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L + + + + + +K + +R ++ ++L+ + + + + + Sbjct: 257 LLNLKRKMDT---TPIRTLFDQQK-VWQNRRALVTQALQRLSLAQLSQAVRLLTQMEITL 312 Query: 321 RK 322 ++ Sbjct: 313 KQ 314 >gi|196047841|ref|ZP_03115019.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108] gi|196021097|gb|EDX59826.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108] Length = 326 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 129/328 (39%), Gaps = 25/328 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ +G + L+ + + + S S+ V + E + E+ SL + Sbjct: 3 IYVLFGLETYLMEKELARIINKESGDNSSDLSVNVYDCEETPVQTAIQDAEM--LSLMLE 60 Query: 83 KKIILIENLS-------TEKKV---LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 +K ++I+N S +KKV L+ +E + + II +K ++ + K Sbjct: 61 RKKVIIKNASFLTGQKSNDKKVKHDLETVERYLEEPNEETDIIFMVKYEKLDSRKKIVKS 120 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K ++ +S + + I++ + +I+KEA + L +G + E++K Sbjct: 121 LKKSADIIEVSHLKEFEAK--KWIKDEAVKLNITITKEAVEQLYLLIGSNLQMLSKEIEK 178 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ Y E + + ++ T II + + A + + K+ + Sbjct: 179 LAMYVGEKGKVDADTIHLLVKKTLEQNTFLIIEKIGKKQFAEAHSIFRELMIQKIEPIMI 238 Query: 251 LHGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++F + K HI K++ I P I+ + +++ +++ Sbjct: 239 AATISKQFSRMLEAKAHIHNGAEQRDLPKLL-----GIQPYPAKIIVNQAKGFHETTLQQ 293 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTIL 336 LH++ ++ +K +IF+ L Sbjct: 294 ILHRLSQMDFEFKRGG--DKELIFEMFL 319 >gi|168187884|ref|ZP_02622519.1| DNA polymerase III, delta subunit [Clostridium botulinum C str. Eklund] gi|169294271|gb|EDS76404.1| DNA polymerase III, delta subunit [Clostridium botulinum C str. Eklund] Length = 340 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 114/295 (38%), Gaps = 23/295 (7%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 F ++ N V++F GSD+ I + I++ + + V L+ + ++ Sbjct: 3 DSFALENKLNKGNLSNVYVFCGSDEQSIKKAIDKIVNKVVNKDFKELNYVQLDGMTVE-- 60 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 I + N + L S+K++ LI + K D +++ + K + I I+ ++ K++ Sbjct: 61 IDSIINACETLPLMSEKRVALIYRANFLK---DKVDKSMEKVFKSLIKYIE--DVPKDSI 115 Query: 127 L--RKIAEKFTSVL------------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 L I E + + L + E K+ISK + Sbjct: 116 LIMYYIFENDREKESLKLKKLDKKIEVVKFSKLKGVALQRKVGEIFKRKNKTISKSDLAL 175 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + + NE++KL Y + ++T + + +I + I +++ Q K Sbjct: 176 FCNIVENNMDIIENEVEKLCCYVDDRDIVT-EDITKLISGKNDNDIFNLVDFVSQKKPQK 234 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 ++ + + + +L ++F+L+ I + + + + I ++ + Sbjct: 235 SLDILNELVFKGESVTGILRMIQRQFKLIFDIKVNMDKE-KNKDDIARELRLHPF 288 >gi|118602184|ref|YP_903399.1| DNA polymerase III, delta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567123|gb|ABL01928.1| DNA polymerase III, delta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 339 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 123/324 (37%), Gaps = 17/324 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G++ LI + + Q K D ++A + + + EI++ SLFS Sbjct: 19 IYFIFGAEILLIEQSLAQINKTAKKVGFDERISFDIDANF---DWNQIFREISAVSLFSP 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K II ++ K L EI + ++I+ + ++ K + + + Sbjct: 76 KCIIKCRLKTGKIGIKGAKALTEIASTLPDDILLIVSTGKLDMAQQKSKWFKTLEQLGTV 135 Query: 141 -SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + HL+D I + + E Q + G+ AS E+QKL + Sbjct: 136 VQHFEMQSNHLVDWIANHMAELGLEANTEIAQSIAFCTEGNLTASMQEIQKLKM-AYPNG 194 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I Q + + +I+A + G + ++ + L + + + Sbjct: 195 KINTQEYLEQANQQSKYTVYGLIDAALFGNSNQVNKIYQTLISDTIMPIQLSNSLYLEIK 254 Query: 260 LLEKIHII-KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKIDH 315 + ++ + + NI+ ++Q + ++ I+ L+ + +++ +L +ID Sbjct: 255 SIIEMSVELIQVKNINI--VLQNNR--VWNKRKPIITNILKRHSYQRLQKLLLSLGRIDR 310 Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339 I +++ + +L +A Sbjct: 311 SIKGMDNLNVIDE--LHTLLLSLA 332 >gi|289425394|ref|ZP_06427171.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK187] gi|289154372|gb|EFD03060.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK187] Length = 340 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L+ + + + LV L E+ + F E SLFS+ Sbjct: 27 ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 I+++ +S +K + D + +I++ +K L K+ + ++ Sbjct: 83 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141 Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 D + D I G + +A L LG D + +L+S + Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGDDLRTLAAAVGQLASDS-PN 197 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPVAVTAAMARGL 257 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313 Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L A + Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339 >gi|310766976|gb|ADP11926.1| DNA polymerase III subunit delta [Erwinia sp. Ejp617] Length = 343 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 105/292 (35%), Gaps = 15/292 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ GS+ L+ E + + F+ V ALE + ++ + SLF+ + Sbjct: 21 YLLSGSEPLLLQEAQDAIRAAAQQQG---FTEHVSVALETGTDWQAIFSTCQALSLFASR 77 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138 + +L+ + + L + + ++I+++ + K N+ K + + Sbjct: 78 QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRAARLTKAQENSAWYKAL--SANAV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + C L + ++ A Q+L G+ +A L++LS D Sbjct: 136 VVPCQTPEHGQLPRWVTIRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + D ++A + GK A+ + A + LL + Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDIEPVILLRTLQRDL 254 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 LL + ++ + + + +R + E+L+ + + + Sbjct: 255 LLLLTLQRQM--AHTPARTLFDQHR--VWQNRRALFSEALQRLTAAQLAQAI 302 >gi|219871150|ref|YP_002475525.1| DNA polymerase III subunit delta [Haemophilus parasuis SH0165] gi|219691354|gb|ACL32577.1| DNA polymerase III subunit delta [Haemophilus parasuis SH0165] Length = 340 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 114/319 (35%), Gaps = 31/319 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVVLNALEIQKNISTFWNEINSTS 78 ++ G D L+ E + + + D F++ ++ ++ + S Sbjct: 19 PFYLLTGQDLLLVGEAKDCIVQTARLQDFDEKQEFTIANDTQWDM------LFDLVQSNG 72 Query: 79 LFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LF ++I+++ L E++ + + + ++ ++ K + + + Sbjct: 73 LFFNRQILILNLPENLTVTQQKQLSELLAFSHTDLLFVLHQPKLTKAMEKQSWFVQLNNA 132 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + ++C + L ++ Q + +A Q+L + G+ +A + LQ L E Sbjct: 133 VVVNCQTPDITKLPIWLQHRAKTMQLQLEPDAIQLLCYSYEGNLLALKQALQMLQLRFAE 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I K++I + + ++A ++GKI A+ + ++ LL ++ Sbjct: 193 QK-IGLNRAKEVIEQSAQFTPFQWVDALLEGKINRALRVLQHLQNEEIQPVVLLRIVQKE 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEK-------------NIIPMKRNILQESLRIWNKN 304 LL ++ + II + + +R Q +++ Sbjct: 252 LLLLLEM-------TRPPQPIINSHQPLYSGNLRTEFDRLKVWQNRRGFYQAAVQRLTYR 304 Query: 305 LVRETLHKIDHRIHLARKK 323 + + + + +++ Sbjct: 305 KLYKLIQSLAELEKQVKQE 323 >gi|170288564|ref|YP_001738802.1| DNA polymerase III, delta subunit [Thermotoga sp. RQ2] gi|170176067|gb|ACB09119.1| DNA polymerase III, delta subunit [Thermotoga sp. RQ2] Length = 324 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G + K + + + + + I + + + ++FS K II I N Sbjct: 7 TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 K L E++ + I I R V P Sbjct: 64 FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 ++ IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V+++ Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 171 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A +GK A L + F L KI ++ Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 230 Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 ++ ++ + + L + W ++ L+ Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 275 >gi|240016035|ref|ZP_04722575.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA6140] Length = 332 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 88/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + + +A + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREVYTADASF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 + + + + ++ A ++G + L D +A + Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272 >gi|332284897|ref|YP_004416808.1| DNA polymerase III, delta subunit [Pusillimonas sp. T7-7] gi|330428850|gb|AEC20184.1| DNA polymerase III, delta subunit [Pusillimonas sp. T7-7] Length = 350 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 123/335 (36%), Gaps = 29/335 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + L+ E + + + ++++A + + S + SLF Sbjct: 22 PLYIVSGDEPLLVIESCDALRAAAGQAGYTERVSLIMDA---RSDWSAAIGATQNVSLFG 78 Query: 82 KKKIIL--IENLSTEKKVLDCLEEII----IKNICNHIIIIKSNEIKKNNTLRK----IA 131 ++++ I K + L ++ + + + +++I + K K + Sbjct: 79 DRRLVELAIPGGKPGKTGAETLLKLADMVQAQALADTMLMISLPRLDKTTRNTKWAQGLF 138 Query: 132 EKFTSV--LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 E TS+ +I + L I + L + + + + + G+ +A+ E+Q Sbjct: 139 EAGTSIEVASIG-----RPALPRWIAQRLARQDQQLDNATLEWMADKVEGNLLAAHQEVQ 193 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL I+ V+ + + I + +A ++G+ A+ + A Sbjct: 194 KLGL-LYPSGQISGPEVERAVLNVARYDIFGLRDAMLKGEAAKALTILTGLRAEGEALPL 252 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLV 306 +L + ++L ++ + S +++ + + +L+++L Sbjct: 253 VLWAVGDEVRVLARLAASR-ASGHDLAAEMRRQR--VFGPREQLLRQTLGRLPVQAWPAA 309 Query: 307 RETLHKIDHRIHLARKKKYLEKNI--IFQTILYIA 339 + H ID I + L+ + + +L IA Sbjct: 310 VQHAHDIDKLIKGLKVPGRLDDPWEELGRLVLRIA 344 >gi|61657398|emb|CAI44314.1| hypothetical protein [Thermotoga petrophila] Length = 329 Score = 74.6 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G + K + + + + + I + + + ++FS K II I N Sbjct: 12 TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 68 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 K L E++ + I I R V P Sbjct: 69 FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 117 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 ++ IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V+++ Sbjct: 118 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 176 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A +GK A L + F L KI ++ Sbjct: 177 VFTYQTPGYDDFCFAVSEGKRKIAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 235 Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 ++ ++ + + L + W ++ L+ Sbjct: 236 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 280 >gi|160884621|ref|ZP_02065624.1| hypothetical protein BACOVA_02610 [Bacteroides ovatus ATCC 8483] gi|156110360|gb|EDO12105.1| hypothetical protein BACOVA_02610 [Bacteroides ovatus ATCC 8483] Length = 339 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 42/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL + Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATAMLADFVGSDLSRLTGELEKLIITLPVG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + + +I+ + + I Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337 >gi|148269878|ref|YP_001244338.1| DNA polymerase III, delta subunit [Thermotoga petrophila RKU-1] gi|147735422|gb|ABQ46762.1| DNA polymerase III, delta subunit [Thermotoga petrophila RKU-1] Length = 324 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G + K + + + + + I + + + ++FS K II I N Sbjct: 7 TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 K L E++ + I I R V P Sbjct: 64 FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 ++ IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V+++ Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 171 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A +GK A L + F L KI ++ Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKIAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 230 Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 ++ ++ + + L + W ++ L+ Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 275 >gi|227327378|ref|ZP_03831402.1| DNA polymerase III subunit delta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 323 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 79/210 (37%), Gaps = 4/210 (1%) Query: 62 EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 ++ + ++ + SLF+ ++ ++++ + + L ++ + ++I++ + Sbjct: 38 DLHTDWDAIFSTCQALSLFASRQSLLLVLPENGPNAAMGENLVKLSGLLHPDILLILRGH 97 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 ++ K + + I+C + L + + + ++ ++A Q++ Sbjct: 98 KLTKAQENSAWFKALAQDSVYINCLTPEQAQLPRWVAQRAKSMKLTLDEQATQLICYCYE 157 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A L++L+ D +T V+ + D ++A + GK A + Sbjct: 158 GNLLALSQALERLAL-LYPDGKLTLPRVESAVNDAAHFTPFHWLDALLAGKGKRAWHILQ 216 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 LL ++ L + Sbjct: 217 QLKQEDCEPVILLRTLQRELLQLLALKRRM 246 >gi|300780674|ref|ZP_07090529.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium genitalium ATCC 33030] gi|300533660|gb|EFK54720.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium genitalium ATCC 33030] Length = 318 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 117/332 (35%), Gaps = 28/332 (8%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H V G D L E Q NI + L A ++ + + S SLF Sbjct: 6 HPVHFVVGEDDFL-AERATQ---NIIAQVSPAAEVTTLRAGDVTEGE---LLQATSPSLF 58 Query: 81 SKKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFT 135 +++++++I++ L+ ++ L+ + +II+ S + + + RK+AE Sbjct: 59 AEERVVVIKDTDLAGKEPTELLLQAAVDPAPGMTLIIVHSGKGRNKSYVQKFRKVAEVHA 118 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-- 193 + P N+ + + + LL ++G D + + +L + Sbjct: 119 AD------PLNQRDRQGWVMNEFRSHGIRPTPDVVGALLESVGSDLRELASAIAQLVADT 172 Query: 194 --YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + IT V+ + +I + + G+ A+ L + A+ Sbjct: 173 KDASGTNSEITVADVRAYYTGVAEVSGFDIADQAVAGRTDRALASTRRALQLGISPVAIA 232 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 K + K++ + + +++ + N K+ + + R W+ + V + Sbjct: 233 AALAHKVGDIAKLY----QTRGNPDQVARTIGMNPYVAKKTM--QIARGWSGDAVSRAVI 286 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + I + IAQ A Sbjct: 287 IVAELDAEVKGQGGDPDFAIEDAVRRIAQLAA 318 >gi|239813443|ref|YP_002942353.1| DNA polymerase III subunit delta [Variovorax paradoxus S110] gi|239800020|gb|ACS17087.1| DNA polymerase III, delta subunit [Variovorax paradoxus S110] Length = 361 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 96/300 (32%), Gaps = 18/300 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L E + + + S + + S S SLF+ Sbjct: 19 LYAIHGDEPLLAQEAADAIRTAARAAGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFAD 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K+I+ I + K L+++ N + ++ + K + Sbjct: 77 KQIVEIRIPSGKPGKDGSIALQQLAESAQGNDSTLTLVMLPRLDKATRTGAWFSALENNG 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLS 192 +++ P + L I + L + + + Q + G+ +A+ E+QKL+ Sbjct: 137 VSLQVDPIERNALPQWIAQRLGLQGQRVMPGDEGQRTLQFFADRVEGNLLAAHQEIQKLA 196 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++ + V+ + + + ++ A + G + D A + + Sbjct: 197 L-LHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRVARMLDGLQAEGEAEVLVHY 255 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNKNLVRETLH 311 + + L+++ +N I + + L + ++ L Sbjct: 256 TIAEDIRALKRVKDAMAAGRPLPM----ALRENRIWGPRERAFERVLPRLDDRMLARLLR 311 >gi|297588463|ref|ZP_06947106.1| DNA-directed DNA polymerase III delta subunit [Finegoldia magna ATCC 53516] gi|297573836|gb|EFH92557.1| DNA-directed DNA polymerase III delta subunit [Finegoldia magna ATCC 53516] Length = 332 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 123/327 (37%), Gaps = 32/327 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ N LS+ + + +G +K I + ++ KK+ D + + + Sbjct: 6 AKQKLDNNLLSN-LILIHGEEKFYIEKYLSLIKKHYKAQSFDEYEIS---------DFEK 55 Query: 70 FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121 ++ + +FS K++ILI +S K+ +D L I + +II+ S + Sbjct: 56 IYSSSETIPMFSDKRLILIDDVDLTKTGISKNKESIDNLLPYIREIPEYTLIIMTSYGNV 115 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ-----KSISKEAKQILLAN 176 K+ L++I I N+ L I L + +I E L+ N Sbjct: 116 FKSKFLKEII---NYGSDIEFNKLNRNQLKAYIINYLKGKKINNNIVNIFIEYSLYLIKN 172 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 I NEL K + LE ITE + +I + + I ++ ++ + I Sbjct: 173 SEKTLIDVNNELDKFIN--LEKDEITEHDLNSLI-NQYDKNIFDLTDSIASKDLSKTIYY 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + LH ++ F+ L IKE + + I + N +Q Sbjct: 230 LNLLINDTSDTFKALHMVIRLFRNLL---YIKELLRLKVSQTEITKRVKISSYELNKVQS 286 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323 ++ W + +R +HK+ + Sbjct: 287 FVKNWRYDQLRFAIHKMYEIETTLKTN 313 >gi|167946137|ref|ZP_02533211.1| DNA polymerase III subunit delta [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 204 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 86/202 (42%), Gaps = 13/202 (6%) Query: 115 IIKSNEIKK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 +I + ++ + N+ K E+ ++ I +P L+ +E L + + Sbjct: 3 LITAPKLDRAQQNSKWVKGVERLGVLVLI--WPIEGQRLLPWLERRLRDVGLTPEPGVVE 60 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +L + G+ +A++ E++KL ++ ++ + + + D+ + +++A + + Sbjct: 61 MLSERIEGNLLAAKQEIEKLLL-LHGPGVVDQEQLAESVADSARFDVFGLVDALLAREAG 119 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 + + + A + + +L ++ + L ++ + E S + ++ + ++ Sbjct: 120 RGLRMLEHLQAEGVVAPVVLWALAREIRALAEMAAMVE-QGRSVDSVMAAQR--VWEKRK 176 Query: 292 NILQESLRI----WNKNLVRET 309 ++++ L+ W + L+ Sbjct: 177 PLMRKGLKRRAAVWRRLLIDCA 198 >gi|182418282|ref|ZP_02949577.1| DNA polymerase III, delta subunit [Clostridium butyricum 5521] gi|237666405|ref|ZP_04526390.1| DNA polymerase III, delta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377664|gb|EDT75208.1| DNA polymerase III, delta subunit [Clostridium butyricum 5521] gi|237657604|gb|EEP55159.1| DNA polymerase III, delta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 344 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 15/279 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++F G D+ LI + I+ +L+ ++ + + N + ++ Sbjct: 20 YVFCGLDEELIKDGIDIIINREVTDDFKELNLIKIDGMNTTFD--DIVNACETMPFMGER 77 Query: 84 KIILIENL--------STEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132 K++L+ ST K+ + L++ I I++ + ++ K N +K+ Sbjct: 78 KVVLVYRATFLQEKCDSTGTKIYNELKKYISDMPPYTILVMYYLCKDKRDKPNKNKKLTP 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + C K + + + +KSI + + + + E+ KL Sbjct: 138 IEKYFPVVFCDKLKKDKFIKKVADIFKEKEKSIGRTELAYFCDKVQNNFDIIKREIDKLI 197 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 SY I + + +I ++ I +++ KI AI + L ++ Sbjct: 198 SYSEGRD-IKKSDIDILISSSNEEDIFDLVELIASRKIDKAIDIMKEILYKSDQHMLIIS 256 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 + F L +I I + + + ++ Sbjct: 257 AVEKHFARLYEIKIGM-SQGKRVQNFMSEYRLPQFVCEK 294 >gi|307266448|ref|ZP_07547984.1| DNA polymerase III, delta subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306918556|gb|EFN48794.1| DNA polymerase III, delta subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 338 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 116/299 (38%), Gaps = 18/299 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG ++ L+ + + + K I + + VV+ ++ + + LFS Sbjct: 17 NVYLFYGEERFLLLDALKRIKAKILMPETMDMNYVVIEKDSPEECMEAIIENCETLPLFS 76 Query: 82 KKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIA 131 K+++++N + K++ + LEE + + +++I E I L K Sbjct: 77 DYKLVVVKNEEEQLSKLGDKELKRLTNYLEEKVTSPQSSIVLVIIGGEKIDLRKKLYKFI 136 Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK ++ + ++ L K + K + ++ ++G D A NE+ K Sbjct: 137 EKIGKIVYFQRLSFEEAVNYAGY---FLKKSGKKVKKSDVEYIVKSVGTDLYAIVNEIHK 193 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L SY + I + +K+++ I ++NA K A + L + Sbjct: 194 LVSYS-DSEEIEMEKMKEVLTINLQQNIFNLVNAIGMKKEKEAYKVLHTLLEKGEVPLII 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L +++ +L+ KI E + I ++ L R++ K + Sbjct: 253 LSMIVRQMRLITKIKS-FEGKFGDKKTIASSLGVPYFAVEE--LMRQSRLFKKEELERA 308 >gi|305667006|ref|YP_003863293.1| hypothetical protein FB2170_12161 [Maribacter sp. HTCC2170] gi|88709241|gb|EAR01475.1| hypothetical protein FB2170_12161 [Maribacter sp. HTCC2170] Length = 333 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 34/276 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + I + +KN+ F+ +VL E I + + + Sbjct: 18 PIYFLHGEEPYYIDRIAEFIEKNVLTEEERGFNQMVLYGKE--ATIDDIVSNAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII------------KSNEIKKNNTL-- 127 ++++++I+ + ++ L K +++ I K+ L Sbjct: 76 ERQVVIIKEAQELSRTIEQLVSYAEKPQPTTVLVFCYKYKKLDKRKKLYKTINKSGVLFE 135 Query: 128 -RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K+ E + + + + L SIS +A +L+ LG D Sbjct: 136 SKKLYENQ---------------VSEWLRKVLHGKDYSISHKAATLLVEYLGTDLSRISK 180 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL KL+ + IT +++ I + E+ A + I A + ++F + Sbjct: 181 ELDKLTLVLQKGSQITPADIEEHIGISKDYNNFELKKAIGERNILKATKIINYFAQNPKD 240 Query: 247 SHALLHGFLQK--FQLLEKIHIIKECSNISFEKIIQ 280 + +L L F L + H + + S + ++ Sbjct: 241 NPFVLTITLLHSFFSQLLQYHGLNDHSPKNVASALR 276 >gi|319787825|ref|YP_004147300.1| DNA polymerase III subunit delta [Pseudoxanthomonas suwonensis 11-1] gi|317466337|gb|ADV28069.1| DNA polymerase III, delta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 345 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 43/343 (12%), Positives = 114/343 (33%), Gaps = 17/343 (4%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 ++ + + ++ V++ G + + E + + V A Sbjct: 2 ELKPDQLVAQAASQPL--RPVYLVAGPETLHVLEAADAIRARARAEGA---EREVFEAEG 56 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + ++ LF+ ++++ + + K + + + ++I +NE Sbjct: 57 REPDWDALSASFDAPGLFASRRLLELRLPSGKPGKTGSEVIMSFCANPAPDVTLLIVANE 116 Query: 121 IKKNNTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 K + K E V++I+ + L IE L S EA Q L + Sbjct: 117 WSKAHQT-KWYEAVGKQGVVSIA-WALKPHELPGWIERRLRDRGLRASPEAVQGLAERVE 174 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 G+ +A+ E+ KL+ + ++ ++ D + ++ + G + Sbjct: 175 GNLLAAAQEIDKLALLAPG-ATLDLATMESLVADAARYDVFRLVETALSGHSAQVRRMLA 233 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 A L+ +++ + + ++ + + ++ + +L Sbjct: 234 GLRAEGEQVAGLMPVVIRELLRAAALARAQARGANLAAEMTSQ---GLWVARQAPFKRAL 290 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKN--IIFQTILYIA 339 + L L R+ A K + ++ + +L IA Sbjct: 291 QRHATPLRWNRLAAYASRVDRAAKGRAAGDPWVLLERLLLAIA 333 >gi|297621209|ref|YP_003709346.1| putative DNA polymerase III delta subunit [Waddlia chondrophila WSU 86-1044] gi|297376510|gb|ADI38340.1| putative DNA polymerase III delta subunit [Waddlia chondrophila WSU 86-1044] Length = 337 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 130/342 (38%), Gaps = 23/342 (6%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALE 62 K ++++ + F S V++ +D FE K + D L L+ Sbjct: 10 DKHLKEAGPHHFAS--VYLLISADY---FERKQLVTKLCGAVLNGSPLDEHHLKKLDGA- 63 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEI 121 ++ E+ S + F+KK++++ EN KK L+ + +++ S+ + Sbjct: 64 -VHSVHELMRELGSFNFFAKKRVVIYENAGELKKEDAGVLKSYYEHPNPSVFLVLSSSSV 122 Query: 122 KKNNTLRKIAEKFTSVLAISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + ++ K EK +L I + + L D K + Q L+ ++ Sbjct: 123 NRGSSFYKQTEKAGVILDIEPEKPWEKEAALSDYAAAWFKKNGKKTASGVNQALVKSVNN 182 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D+ E++K+ Y E+ ++ + ++ I + ++ +A K A+ +++ Sbjct: 183 DQAQLLQEMEKILCYLGENEEVSFEDLRVIGSGQTSYTVWQLGDAVFSRKGKEALEISNQ 242 Query: 240 FLASKMPSHALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 L LL +FQ L E + + ++ + +Q++L Sbjct: 243 LLGDGESLIGLLRALRMQFQTRLLGATAQPEE----VQSRVPYLRGPLLHKQ---IQQAL 295 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + RE + ID LA+ ++ I+ ++ +A Sbjct: 296 QY-GAESCREGVLLIDEAERLAKNSGIADRCILETLMIKLAV 336 >gi|326389876|ref|ZP_08211440.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994144|gb|EGD52572.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus JW 200] Length = 338 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 116/299 (38%), Gaps = 18/299 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++FYG ++ L+ + + + K I + + VV+ ++ + + LFS Sbjct: 17 NVYLFYGEERFLLLDALKRIKAKILMPETMDMNYVVIEKDSPEECMEAIIENCETLPLFS 76 Query: 82 KKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIA 131 K+++++N + K++ + LEE + + +++I E I L K Sbjct: 77 DYKLVVVKNEEEQLSKLGDKELKRLTNYLEEKVTSPQSSIVLVIIGGEKIDLRKKLYKFI 136 Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK ++ + ++ L K + K + ++ ++G D A NE+ K Sbjct: 137 EKIGKIVYFQRLSFEEAVNYAGY---FLKKSGKKVKKSDVEYIVKSVGTDLYAIVNEIHK 193 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L SY + I + +K+++ I ++NA K A + L + Sbjct: 194 LVSYS-DSEEIEMEKMKEVLTINLQQNIFNLVNAIGMKKEKEAYKVLHTLLEKGEVPLII 252 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L +++ +L+ KI E + I ++ L R++ K + Sbjct: 253 LSMIVRQMRLITKIKS-FEGKFGDKKTIASSLGVPYFAVEE--LMRQSRLFKKEELERA 308 >gi|219683760|ref|YP_002470143.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp. lactis AD011] gi|241190795|ref|YP_002968189.1| hypothetical protein Balac_0757 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196201|ref|YP_002969756.1| hypothetical protein Balat_0757 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|219621410|gb|ACL29567.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240249187|gb|ACS46127.1| hypothetical protein Balac_0757 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250755|gb|ACS47694.1| hypothetical protein Balat_0757 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793784|gb|ADG33319.1| hypothetical protein BalV_0731 [Bifidobacterium animalis subsp. lactis V9] Length = 320 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG D+ L + + + D L ++A N ++E S SL S++ Sbjct: 8 LLIYGGDEYLNEQNARDAVYRLLEEHRD-AELARVDARSADANS---FDEAVSPSLLSQR 63 Query: 84 KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ +E+ + +LD + + + ++++ K ++ + + + Sbjct: 64 SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 123 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + + + I +A Q L+ LG +++L + +D Sbjct: 124 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 182 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + V + + + + + GK A++ LA AL+ + + Sbjct: 183 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 242 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K I++ + + + R L W + + ++ Sbjct: 243 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 295 Query: 320 ARKKK 324 + + Sbjct: 296 CKSRG 300 >gi|27363753|ref|NP_759281.1| DNA polymerase III subunit delta [Vibrio vulnificus CMCP6] gi|27359869|gb|AAO08808.1| DNA polymerase III, delta subunit [Vibrio vulnificus CMCP6] Length = 341 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 13/304 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ LI E + +K F A++ + + ++ + SLFS Sbjct: 18 PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I +E + + L + + +++I +++ K K + Sbjct: 75 SRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC + L + + ++A Q+L G+ A L+KL+ D Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + +++ + + + I+A ++GK + A + + LL + Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQK-- 251 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317 E + +++ + ++Q EK+ I K+ + +L +R+ L + Sbjct: 252 ---ELLLLLQMQQQLQQSSMMQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308 Query: 318 HLAR 321 LA+ Sbjct: 309 ILAK 312 >gi|21221023|ref|NP_626802.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|289771700|ref|ZP_06531078.1| DNA polymerase III, delta subunit [Streptomyces lividans TK24] gi|6714670|emb|CAB66242.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] gi|289701899|gb|EFD69328.1| DNA polymerase III, delta subunit [Streptomyces lividans TK24] Length = 336 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 45/340 (13%), Positives = 114/340 (33%), Gaps = 14/340 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + T N V + G + L+ + Q + + L ++Q T Sbjct: 8 MARKTANDDPLAPVTLAVGQED-LLLDRAVQEVVAAAKAADADTDVRDLTPDQLQ--PGT 64 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + ++++ + K L Sbjct: 65 LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGKGVL 123 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + +A L + +S + EA Q L+ +G D + Sbjct: 124 DAGRKAGAREVACPKMTKPADRLAF-VRAEFRTAGRSATPEACQALVDAIGSDLRELASA 182 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L+ + + E V + + ++G+ A+ + LA+ + Sbjct: 183 VSQLT--ADVEGTVDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 240 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + Q + I + + ++ P K + +++ +R W + V Sbjct: 241 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVS 295 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 L + + + + + ++ IA+ A Sbjct: 296 VALRAVAEADAGVKGGGDDPEYALEKAVVIIARAARSRGR 335 >gi|297194433|ref|ZP_06911831.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718758|gb|EDY62666.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 333 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 100/294 (34%), Gaps = 16/294 (5%) Query: 59 NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHII 114 + ++ + T E+ S SLF+++K++++ N + ++ + + Sbjct: 50 DVRDLTADQLLPGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPAEEITL 108 Query: 115 IIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQI 172 ++ K L A K ++C P L + +S + EA Q Sbjct: 109 VLLHPGGAKGKGLLDAARKA-GAREVAC-PKTTKPAERLGFVRSEFRALGRSATPEACQA 166 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L+ +G D + + +L+ + + E V + + ++G+ Sbjct: 167 LVDAIGSDLRELASAVSQLT--ADVEGTVDEAVVGRYYTGRAEASSFNVADRAVEGRAAE 224 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ + L++ + + Q + I + + ++ P K + Sbjct: 225 ALEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKID 279 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 +++ +R W + V L + + + + + ++ IA A Sbjct: 280 RVRQQMRGWTPDGVAMALRAVAEADAGVKGGGDDAEYALEKAVVTIATAARSRR 333 >gi|289427206|ref|ZP_06428922.1| DNA polymerase III, delta subunit [Propionibacterium acnes J165] gi|295130459|ref|YP_003581122.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK137] gi|289159675|gb|EFD07863.1| DNA polymerase III, delta subunit [Propionibacterium acnes J165] gi|291376258|gb|ADE00113.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK137] gi|313764598|gb|EFS35962.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL013PA1] gi|313772364|gb|EFS38330.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL074PA1] gi|313807375|gb|EFS45862.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL087PA2] gi|313809884|gb|EFS47605.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL083PA1] gi|313813079|gb|EFS50793.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL025PA1] gi|313816135|gb|EFS53849.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL059PA1] gi|313818423|gb|EFS56137.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL046PA2] gi|313820185|gb|EFS57899.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL036PA1] gi|313823007|gb|EFS60721.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL036PA2] gi|313825065|gb|EFS62779.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL063PA1] gi|313827962|gb|EFS65676.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL063PA2] gi|313830798|gb|EFS68512.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL007PA1] gi|313834015|gb|EFS71729.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL056PA1] gi|314915592|gb|EFS79423.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL005PA4] gi|314918453|gb|EFS82284.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL050PA1] gi|314919941|gb|EFS83772.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL050PA3] gi|314925414|gb|EFS89245.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL036PA3] gi|314931955|gb|EFS95786.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL067PA1] gi|314955822|gb|EFT00222.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL027PA1] gi|314958304|gb|EFT02407.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL002PA1] gi|314960141|gb|EFT04243.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL002PA2] gi|314967979|gb|EFT12078.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL037PA1] gi|314973222|gb|EFT17318.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL053PA1] gi|314975894|gb|EFT19989.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL045PA1] gi|314978347|gb|EFT22441.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL072PA2] gi|314983638|gb|EFT27730.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL005PA1] gi|314987586|gb|EFT31677.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL005PA2] gi|314990071|gb|EFT34162.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL005PA3] gi|315080788|gb|EFT52764.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL078PA1] gi|315084457|gb|EFT56433.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL027PA2] gi|315085797|gb|EFT57773.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL002PA3] gi|315088786|gb|EFT60762.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL072PA1] gi|315096131|gb|EFT68107.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL038PA1] gi|315098395|gb|EFT70371.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL059PA2] gi|315101249|gb|EFT73225.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL046PA1] gi|315108473|gb|EFT80449.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL030PA2] gi|327326050|gb|EGE67840.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL096PA2] gi|327330756|gb|EGE72502.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL097PA1] gi|327332078|gb|EGE73815.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL096PA3] gi|327443283|gb|EGE89937.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL013PA2] gi|327446067|gb|EGE92721.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL043PA2] gi|327447951|gb|EGE94605.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL043PA1] gi|327450921|gb|EGE97575.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL087PA3] gi|327453729|gb|EGF00384.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL083PA2] gi|328753609|gb|EGF67225.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL020PA1] gi|328754343|gb|EGF67959.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL087PA1] gi|328754829|gb|EGF68445.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL025PA2] gi|328760449|gb|EGF74017.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL099PA1] gi|332675296|gb|AEE72112.1| DNA polymerase III, delta subunit [Propionibacterium acnes 266] Length = 340 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L+ + + + LV L E+ + F E SLFS+ Sbjct: 27 ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 I+++ +S +K + D + +I++ +K L K+ + ++ Sbjct: 83 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141 Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 D + D I G + +A L LG D + +L+S + Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGNDLRTLAAAVGQLASDS-PN 197 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPAAVTAAMARGL 257 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313 Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L A + Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339 >gi|116071733|ref|ZP_01469001.1| hypothetical protein BL107_06274 [Synechococcus sp. BL107] gi|116065356|gb|EAU71114.1| hypothetical protein BL107_06274 [Synechococcus sp. BL107] Length = 321 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 39/319 (12%), Positives = 111/319 (34%), Gaps = 17/319 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D I+ ++ +L L+ E + I E + + Sbjct: 2 PIHLIWGDDAAARDRAIDGLIQSRVDPSWSSLNLSRLDGAETGQAIQAL-EEARTPPFAT 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++++L++ ++ D E + + +++ + ++ TL+K + Sbjct: 61 GERLVLLQRSPFCNGCPSELADRFEAALELIPDSSHLVLVNPSKPDGRLRTTKTLQKRIK 120 Query: 133 KFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + P + L++ + ++ +A L+ +G D +EL+K Sbjct: 121 QGLDLEQSFPLPTAWDGAGQRQLVQRTADALSLTVKPDAIDALVEAIGTDSARLESELRK 180 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS IT V +++ + + +A + G AI D + + P+ + Sbjct: 181 LSLRT---TTITAALVTELVGGRATNAL-AVGDALLDGNAGEAIARWDALIEAGEPALRI 236 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + + + ++++ I + P + ++++ L+ L Sbjct: 237 VATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPPKRFLSLL 295 Query: 311 HKIDHRIHLARKKKYLEKN 329 ++ L ++ Sbjct: 296 GRLLEVEALLKRGALPGNA 314 >gi|260435924|ref|ZP_05789894.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 8109] gi|260413798|gb|EEX07094.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 8109] Length = 419 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 108/321 (33%), Gaps = 21/321 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D I+ I +L L+ + + + E + + Sbjct: 100 PIHLLWGDDAAARDRAIDALIGQIVDPSWRSLNLSRLDGADAGQALQAL-EEARTPPFAT 158 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++++L++ ++ D E + +++ + K + LR + Sbjct: 159 GERLVLLQRSPFCNGCPSELADRFEGALELIPDTSHLVLVNPA-KPDGRLRTTKTLQKRI 217 Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + + D L++ + + +A L+ +G D +EL Sbjct: 218 KSGLDHEQSFPLPAAWDGNGQ-RQLVQRTAEALGLKVEPDAIDALVDAIGTDSARLESEL 276 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KLS D I+ V++++ + + +A ++G AI D + + P+ Sbjct: 277 RKLSL---RDTSISAARVQELVGGRSTNAL-AVGDALLEGNPGEAIARWDALIEAGEPAL 332 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 ++ + + + ++++ I + P + ++++ L+ + Sbjct: 333 RIVATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPKRFLS 391 Query: 309 TLHKIDHRIHLARKKKYLEKN 329 L ++ ++ Sbjct: 392 LLGRLLEVEAQLKRGAQPGDA 412 >gi|183601707|ref|ZP_02963077.1| hypothetical protein BIFLAC_03607 [Bifidobacterium animalis subsp. lactis HN019] gi|183219313|gb|EDT89954.1| hypothetical protein BIFLAC_03607 [Bifidobacterium animalis subsp. lactis HN019] Length = 339 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG D+ L + + + D L ++A N ++E S SL S++ Sbjct: 27 LLIYGGDEYLNEQNARDAVYRLLEEHRD-AELARVDARSADANS---FDEAVSPSLLSQR 82 Query: 84 KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ +E+ + +LD + + + ++++ K ++ + + + Sbjct: 83 SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 142 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + + + I +A Q L+ LG +++L + +D Sbjct: 143 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 201 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + V + + + + + GK A++ LA AL+ + + Sbjct: 202 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 261 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K I++ + + + R L W + + ++ Sbjct: 262 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 314 Query: 320 ARKKK 324 + + Sbjct: 315 CKSRG 319 >gi|37679093|ref|NP_933702.1| DNA polymerase III subunit delta [Vibrio vulnificus YJ016] gi|37197835|dbj|BAC93673.1| DNA polymerase III, delta subunit [Vibrio vulnificus YJ016] Length = 341 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 13/304 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G++ LI E + +K F A++ + + ++ + SLFS Sbjct: 18 PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 +++I +E + + L + + +++I +++ K K + Sbjct: 75 TRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ISC + L + + ++A Q+L G+ A L+KL+ D Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + +++ + + + I+A ++GK + A + + LL ++ Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQKEL 253 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317 L +++ + ++Q EK+ I K+ + +L +R+ L + Sbjct: 254 LL-----LLQMQQQLQQSSMMQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308 Query: 318 HLAR 321 LA+ Sbjct: 309 ILAK 312 >gi|50842383|ref|YP_055610.1| DNA polymerase III, delta subunit [Propionibacterium acnes KPA171202] gi|50839985|gb|AAT82652.1| DNA polymerase III, delta subunit [Propionibacterium acnes KPA171202] Length = 321 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 121/328 (36%), Gaps = 21/328 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L+ + + + LV L E+ + F E SLFS+ Sbjct: 8 ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 63 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136 I+++ +S +K + D + +I++ +K L K+ E Sbjct: 64 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 123 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + D I G + ++A L LG D + +L+S Sbjct: 124 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 176 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 177 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 236 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 237 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 292 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L + A + Sbjct: 293 CDAAVKGAAVDPDYALESMLIAIEEARQ 320 >gi|306820577|ref|ZP_07454208.1| DNA-directed DNA polymerase III delta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551394|gb|EFM39354.1| DNA-directed DNA polymerase III delta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 344 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 111/304 (36%), Gaps = 31/304 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL----NALEIQKNISTFWNEINSTS 78 V + YG + I +F +N+ + + F + + +++ NI N S Sbjct: 17 VCLVYGEE----RYEIEKFIENMKESLSESFRQLNFISVDSEYDVETNIDFLINSCESVP 72 Query: 79 LFSKKKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +K+++L++N + + L+ + + + ++ ++ K + L K Sbjct: 73 FMDEKRVVLVKNSNLFQTSTTKIYSNDDIIKLKNYLENPLQSTRLVFAPTKVDKRSELYK 132 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIAS-- 184 + K V I+C +KI + +I K + G D Sbjct: 133 LINKKYEV--INCDRLDKISFSRWVSNRFKEKNITIDNHTKDYFIQRCGYLNKDSQVMLL 190 Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +E++KL ++ + ++ + + + I+ I + Sbjct: 191 DVESEIEKLRV-NKTQKNLSIEDIEKLNLLIEENNVFKYIDYLFSKDIEKVYNTTKQIIF 249 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 S S +L ++ LL KI+I++ + S E I + +K++++ L+ + Sbjct: 250 S-FNSILVLSLIGRQISLLMKIYILR-KNGCSQESIAKILSLQAFVIKKDMI--QLKKYT 305 Query: 303 KNLV 306 + + Sbjct: 306 FDEL 309 >gi|229495978|ref|ZP_04389702.1| DNA polymerase III, delta subunit family [Porphyromonas endodontalis ATCC 35406] gi|229317070|gb|EEN82979.1| DNA polymerase III, delta subunit family [Porphyromonas endodontalis ATCC 35406] Length = 347 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 11/277 (3%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 H+ ++ + L +F+ G + I L+ ++ S +L E+ Sbjct: 13 HQLVKSFSSGKELPPLLFLG-GEESYYIDRLVELLAEHYLPREEWALSRTILYGSELS-- 69 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--N 124 + + I S+SL +++ +I ++ K + + +E I +++ + + ++ Sbjct: 70 LPELRDTILSSSLLGGRRLYIIREVNAIKGLDEIVEAIPSIQPETTVVLCYNGDPERAAR 129 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + L+++ E + N LI ++ + ++ +A L +G + Sbjct: 130 SLLKRLTEAQVPLFLSPKMR-NSRDTASLIRDAADLLHITVEPDAMGALYDFIGTNGATL 188 Query: 185 RNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF--FL 241 +EL+KL+ ++T V+ + + E++NA + + A LA + Sbjct: 189 YSELRKLAVLASGRGGMVTRAMVEQNVGISREYSPYELLNALVAKQRAKAYKLARYMALN 248 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 + P +L F L + ++ + NIS + + Sbjct: 249 EKRYPLPIILSTLYTYFANL--MIVMYQPRNISADDV 283 >gi|91790429|ref|YP_551381.1| DNA polymerase III subunit delta [Polaromonas sp. JS666] gi|91699654|gb|ABE46483.1| DNA polymerase III, delta subunit [Polaromonas sp. JS666] Length = 374 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 38/337 (11%), Positives = 117/337 (34%), Gaps = 22/337 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L+ E + + + ++ + + S S SLF+ Sbjct: 24 LYTLHGDEPLLVQEFADALRAAAREQGYTERTVHTVAGAHF--DWSEVLASGGSLSLFAD 81 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137 ++I+ I + K L+++ + + + ++ + + Sbjct: 82 RQIVEIRIPSGKPGKDGSVALQQLAERAQGDDSTLTLVLLPRLDSMTAKGAWFGALDSFG 141 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKL- 191 + + P ++ +L I + L + ++ + Q + G+ +A+ E+QKL Sbjct: 142 VTVKFDPIDRRNLPQWIAQRLQQQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQKLG 201 Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 Y ED +++ V++ + + + ++ A + G+ + D + + Sbjct: 202 LLYPAQEDGILSFDQVENAVLNVARYDVFKLSEAVLGGQAVRVARMLDGLQSEGESEVLV 261 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVR 307 + + ++++ + + + I K + + + + Sbjct: 262 HWALSEDIRSMKRVKDAIQAGRPMPMALRENRVWGI---KEKLFERVLPQMGDTTLANLL 318 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 HK+D + ++ + +Q + +A C+ Sbjct: 319 HAAHKVDGIVKGLKQPDWPADG--WQALHRLAGMVCR 353 >gi|319897590|ref|YP_004135787.1| DNA polymerase iii, delta subunit [Haemophilus influenzae F3031] gi|317433096|emb|CBY81470.1| DNA polymerase III, delta subunit [Haemophilus influenzae F3031] Length = 344 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLTKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 AILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKSQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + LA+++ Sbjct: 315 ELANIERLAKQE 326 >gi|52424387|ref|YP_087524.1| DNA polymerase III subunit delta [Mannheimia succiniciproducens MBEL55E] gi|52306439|gb|AAU36939.1| HolA protein [Mannheimia succiniciproducens MBEL55E] Length = 345 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 112/318 (35%), Gaps = 25/318 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + + D + ++ + + S LF Sbjct: 19 KVYLLVGQDPLLLSESQDNIIQAATKSGFDEKLEIQIDNGTNWND---LFERCQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF------- 134 K++I + +L + + + ++ K L K+ EK Sbjct: 76 SKQVITLHFPENPTALLS--KNLAELISLLNSDLLLILHFGK---LTKLMEKQDWFIQSE 130 Query: 135 ---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + ++C L + ++A Q+L + + +A + LQ L Sbjct: 131 QYDRNAVLVNCQTPTAEQLPRWVANRCKAMGLIAEQDAVQLLCYSYENNLLALKQTLQLL 190 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 D +T VK+I+ + V + I+A ++GK A + A + LL Sbjct: 191 DL-LHADHKLTFVRVKNIVEQSSVFTPFQWIDALLEGKEARARRILTGLQAEDIQPIILL 249 Query: 252 HGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305 ++ LL+ + +++ + + + I +R + ++ + Sbjct: 250 RSLQRELTILLQLAKPQHKTASVDSALPVAQLREGFDRLKIWQNRRPLFTQAFQRLTYRK 309 Query: 306 VRETLHKIDHRIHLARKK 323 + + ++ LA+++ Sbjct: 310 LYLAVQQLAELERLAKQE 327 >gi|261856329|ref|YP_003263612.1| DNA polymerase III subunit delta [Halothiobacillus neapolitanus c2] gi|261836798|gb|ACX96565.1| DNA polymerase III, delta subunit [Halothiobacillus neapolitanus c2] Length = 335 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 88/245 (35%), Gaps = 11/245 (4%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G D + E + + + + + + SLF+++ Sbjct: 20 YVLVGDDWLQLDEARQSIARQARSAGVTERLRFEVEGRF---DWGSLKSVGANLSLFAER 76 Query: 84 KII--LIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 +++ I K+ + L+ + + + + + +I ++ N + Sbjct: 77 RLVDLRIPGGKPGKEGGEALKTLAAQLSNADETDDVWLISLPKLDMNAQKSVWFSALSQA 136 Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I +P L IE I +A Q++ + G+ +A++ EL K S L Sbjct: 137 GVTIQFWPIGLRDLPRWIESRGAKLGLRILPDAAQLIAERVEGNLLAAKQELDKFSLLNL 196 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T Q + + I D ++ +A + G A L + + +L + Sbjct: 197 PNP-LTAQMLLENITDQSRFNPFDLGDALLDGDRSRAGHLLARLREEGVDAILILWVLSR 255 Query: 257 KFQLL 261 + +LL Sbjct: 256 ELRLL 260 >gi|242238542|ref|YP_002986723.1| DNA polymerase III subunit delta [Dickeya dadantii Ech703] gi|242130599|gb|ACS84901.1| DNA polymerase III, delta subunit [Dickeya dadantii Ech703] Length = 343 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 90/253 (35%), Gaps = 7/253 (2%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G++ L+ E +Q + VL+ + ++ + SLF Sbjct: 18 RGCYLLCGNEPLLLQESQDQIRAAAQQQEFLEHFSFVLDNAT---DWDAVFSTCQALSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137 + ++ +L+ + + + L ++ + ++II+ N++ K + Sbjct: 75 ASRQTLLLNLPDAGPTAAMSEQLIKLAGLLHPDILLIIRGNKLSKAQENSAWFKTLAEQG 134 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + C + HL + + + + A Q++ G+ +A L++L+ Sbjct: 135 VYVPCLSPEQEHLPRWVAQRAKTMKLELDDAAGQLICYCYEGNLLALVQALERLTL-LYP 193 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T V+ + D ++A + GK A + LL ++ Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRAWHILHQLRLEDGEPVILLRTVQRE 253 Query: 258 FQLLEKIHIIKEC 270 LL ++ Sbjct: 254 LLLLLQLKRQMAT 266 >gi|229543794|ref|ZP_04432854.1| DNA polymerase III delta [Bacillus coagulans 36D1] gi|229328214|gb|EEN93889.1| DNA polymerase III delta [Bacillus coagulans 36D1] Length = 202 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 74/192 (38%), Gaps = 15/192 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I + + + F+ + E+ + T + + Sbjct: 15 PLYLLYGAEDYFIQKTKQKLLDHALTPEEADFNYASYDLEEV--PVETAVEDAETFPFMG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++++++ + L+ EK+ LD LE + + ++ + ++ + L K+ Sbjct: 73 ERRLVIAHHPFFLTAEKQKQKVEHQLDKLEAYVKSPAPYTVFVLVAPYEKLDERKKLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K N+ L + I ++A + L++ G + IA +E+ K Sbjct: 133 IKKQ--AATFQAKKLNERELEGWLVSRAAEEGCRIDRKAAEHLISLAGTNMIALDHEINK 190 Query: 191 LSSYCLEDILIT 202 L+ Y IT Sbjct: 191 LALYAGSGNEIT 202 >gi|256787813|ref|ZP_05526244.1| DNA-binding protein [Streptomyces lividans TK24] Length = 312 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 96/283 (33%), Gaps = 11/283 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ N + ++ + ++++ + K Sbjct: 38 PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 96 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 97 GVLDAGRKAGAREVACPKMTKPADRLAF-VRAEFRTAGRSATPEACQALVDAIGSDLREL 155 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L+ + + E V + + ++G+ A+ + LA+ Sbjct: 156 ASAVSQLT--ADVEGTVDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATG 213 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + I + + ++ P K + +++ +R W + Sbjct: 214 VAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 268 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 V L + + + + + ++ IA+ A Sbjct: 269 GVSVALRAVAEADAGVKGGGDDPEYALEKAVVIIARAARSRGR 311 >gi|319764763|ref|YP_004128700.1| DNA polymerase iii, delta subunit [Alicycliphilus denitrificans BC] gi|317119324|gb|ADV01813.1| DNA polymerase III, delta subunit [Alicycliphilus denitrificans BC] Length = 359 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E + + + S + + S S SLF Sbjct: 17 RSLYTLHGDEPLLQQEAQDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I I I + K L++I + N + I+ + K Sbjct: 75 ADKQILEIRIPSGKPGKDGASALQQIAAQADGNDSTLTIVLLPRLDKATRTGAWFSALEA 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190 + P + L I + L + ++ Q + G+ +A+ E+QK Sbjct: 135 HGATVQIDPVERAALPQWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ + + V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPPGELAWEQVEAAVLNVARYDVFKLSEAVLCGQVARVQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277 + + L+++ Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMA 280 >gi|298385657|ref|ZP_06995215.1| DNA polymerase III, delta subunit [Bacteroides sp. 1_1_14] gi|298261798|gb|EFI04664.1| DNA polymerase III, delta subunit [Bacteroides sp. 1_1_14] Length = 339 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADHITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQAVRNI-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGIDMEPKATAMLADFVGSDLSRLTGELEKLIITLPTG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLR--TTWQARD-YSIAMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ K + +I+ + + I Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337 >gi|295084203|emb|CBK65726.1| DNA polymerase III, delta subunit [Bacteroides xylanisolvens XB1A] Length = 339 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPVYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATFMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLTYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + + +I+ + + I Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337 >gi|330826979|ref|YP_004390282.1| DNA polymerase III subunit delta [Alicycliphilus denitrificans K601] gi|329312351|gb|AEB86766.1| DNA polymerase III, delta subunit [Alicycliphilus denitrificans K601] Length = 359 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E + + + S + + S S SLF Sbjct: 17 RSLYTLHGDEPLLQQEAQDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I I I + K L++I + N + I+ + K Sbjct: 75 ADKQILEIRIPSGKPGKDGASALQQIAAQADGNDSTLTIVLLPRLDKATRTGAWFSALEA 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190 + P + L I + L + ++ Q + G+ +A+ E+QK Sbjct: 135 HGATVQIDPVERAALPQWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ + + V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPPGELAWEQVEAAVLNVARYDVFKLSEAVLCGQVARVQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277 + + L+++ Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMA 280 >gi|313792288|gb|EFS40389.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL110PA1] gi|313801763|gb|EFS42997.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL110PA2] gi|313838593|gb|EFS76307.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL086PA1] gi|314962947|gb|EFT07047.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL082PA1] gi|315078160|gb|EFT50211.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL053PA2] gi|327453000|gb|EGE99654.1| DNA polymerase III, delta subunit [Propionibacterium acnes HL092PA1] Length = 340 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G++ L+ + + + LV L E+ + F E SLFS+ Sbjct: 27 ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 I+++ +S +K + D + +I++ +K L K+ + ++ Sbjct: 83 ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141 Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 D + D I G + +A L LG D + +L+S + Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGDDLRTLAAAVGQLASDS-PN 197 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + V + + +A+++G++ +A+ + L+ + A+ + Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPAAVTAAMARGL 257 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + + +++ + +++ Q + P K L + R W+K V + ++ + Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313 Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344 A K ++ + +++L A + Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339 >gi|289178531|gb|ADC85777.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp. lactis BB-12] Length = 359 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG D+ L + + + D L ++A N ++E S SL S++ Sbjct: 47 LLIYGGDEYLNEQNARDAVYRLLEEHRDA-ELARVDARSADANS---FDEAVSPSLLSQR 102 Query: 84 KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ +E+ + +LD + + + ++++ K ++ + + + Sbjct: 103 SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 162 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + + + I +A Q L+ LG +++L + +D Sbjct: 163 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 221 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + V + + + + + GK A++ LA AL+ + + Sbjct: 222 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 281 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K I++ + + + R L W + + ++ Sbjct: 282 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 334 Query: 320 ARKKK 324 + + Sbjct: 335 CKSRG 339 >gi|319949559|ref|ZP_08023606.1| DNA polymerase III delta subunit [Dietzia cinnamea P4] gi|319436777|gb|EFV91850.1| DNA polymerase III delta subunit [Dietzia cinnamea P4] Length = 324 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 102/313 (32%), Gaps = 30/313 (9%) Query: 25 IFYGSDKGLIFELINQ----FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + G D+ L E + + DP + L E+ F E+ S SLF Sbjct: 12 LVLGEDEFL-TERATTGVVSAVRAATPAGQDPPVVSRLGGPEVTA-PQLF--ELLSPSLF 67 Query: 81 SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + +I+++ + K + + +++++ + L + + Sbjct: 68 GEARIVVVTGAAELGKDAQAAVLDAARDLPPETVLVVQHTGGGRAKALVADLRRAGAEEH 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197 + + ++ + ++ EA + L+ +G D L++L+S C + Sbjct: 128 AAGKLTRHMDVVGFVRSEFRGLNVRVAPEACEALVEAVGTD-------LRQLASACGQLV 180 Query: 198 ---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + V+ + + + G + AI ++ L + +P L Sbjct: 181 ADTGGKVDVEAVRRYHSGVVGVSGFTVAERAVTGDVAGAIEALEWALHTGVPEVVLADAL 240 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH--- 311 + I ++ + ++ ++ + + R W+ + L Sbjct: 241 A---DAVNSIALVGTQRGVPPAELAKQGLPP--WKVKK-VTAQTRYWSIETLGSALQVVA 294 Query: 312 KIDHRIHLARKKK 324 +++ + + Sbjct: 295 RLNGEVKGRAENP 307 >gi|322379201|ref|ZP_08053592.1| DNA polymerase III [Helicobacter suis HS1] gi|322379727|ref|ZP_08054040.1| DNA polymerase III subunit delta [Helicobacter suis HS5] gi|321147876|gb|EFX42463.1| DNA polymerase III subunit delta [Helicobacter suis HS5] gi|321148341|gb|EFX42850.1| DNA polymerase III [Helicobacter suis HS1] Length = 324 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 107/321 (33%), Gaps = 40/321 (12%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M E ++Q + YG + I N+ K + + Sbjct: 1 MYQKELETYLQHKIP------RAVLLYGEWEFYIEYYANKIAK-----LTPQVQIYRVYF 49 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIK-- 117 + I+ SLF ++ ++ + K + L + + K++ N +II Sbjct: 50 KDYCF--EEVLEYISQDSLFGGGSLVWLKLDKKLAAKEVRMLLDRLSKHLQNALIIEFYK 107 Query: 118 -------SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + + K+ + V+ + + + + L++E S+S EA Sbjct: 108 AKSQSEYAQDFKQFAA--QFKHPKLEVIEVRFFMPDLHARLALLQEKTRALNLSVSMEAL 165 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 +LL D +L+KL+ D I V + + +EE++ A + + Sbjct: 166 TLLLEVQNNDIRIIYQDLEKLALL---DKPIGLSDVHTHVYGVGGIQLEELL-AVLFKRS 221 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + LA L+ G + F L + + + + ++I+ Sbjct: 222 SKVLETFMRLLAEGFEEIELIRGLQRYFYQLFGFYAYMQKGSGNAKEIL-GYNPP----- 275 Query: 291 RNILQESLRIWNKNLVRETLH 311 + ++L+ ++ ++ Sbjct: 276 -QAITQTLK----ERCKQVMN 291 >gi|238920812|ref|YP_002934327.1| DNA polymerase III subunit delta [Edwardsiella ictaluri 93-146] gi|238870381|gb|ACR70092.1| DNA polymerase III, delta subunit, putative [Edwardsiella ictaluri 93-146] Length = 344 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 39/319 (12%), Positives = 114/319 (35%), Gaps = 16/319 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I + + L +F+ G++ LI E ++ ++ D L+ Sbjct: 1 MSRIYPEQLGAQLQDGLRACYFIL---GNEPLLIQESLDLIRQRARAHGFDEQFSATLDP 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + ++ S SLF+ ++I+ + + + + L ++ + +++++ Sbjct: 58 HT---DWDALFSRSQSMSLFASRQILTLTLPDNGVNAAMGERLSQLATLLHPDLLLLLRG 114 Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 + + ++ +SC + L + Q + + A Q+L Sbjct: 115 PRLTRTQENAAWYKQLSPQATLVSCQTPEQTQLPRWVANRARQMQLQLDEAALQLLCYCY 174 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G+ +A L +LS D +T V+ + D ++A + + A + Sbjct: 175 EGNLLALTQALGRLSL-LYPDGRLTLPRVEQAVNDAAHFSPFHWLDACLAARSKRAWHIL 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQE 296 + L+ + E + +++ + + +K+ + +R +L + Sbjct: 234 NQLRQEGCEPIVLVRTVQR-----ELLLLLQLKGGAAQTPLRTLFDKHKVWQNRRPLLTQ 288 Query: 297 SLRIWNKNLVRETLHKIDH 315 +++ + + + + + Sbjct: 289 AMQTLSLPQLHQAVALLSQ 307 >gi|260911394|ref|ZP_05917987.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634489|gb|EEX52586.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 342 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 98/258 (37%), Gaps = 10/258 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I + N ++ + F+ +L ++ + + + + Sbjct: 24 PVYVLMGEESYYIDRIANLLEETVLQPQERDFNQDILFGVDTNG--VQVADLCKAYPMMA 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++++++ K+ D L + + + ++++ K+ I + L +A + Sbjct: 82 ERRLVMVKEAQNLKQ-TDALAKYLEHPVETTVLVLCHKNGTIDRRKKL--LARAEAIGVV 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198 L I+ L + ++ +A ++ ++G D +EL K L S D Sbjct: 139 FESKKKRDYELPAFIKGYLSTKKATVEDKAAIMIAEHIGSDLNRLTSELDKVLISLPEND 198 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 + IT V+ I + E+ NA + ++ A + +F + A L Sbjct: 199 LRITPDIVERQIGVSKEFNGFELRNAIVNRDVFKANQIIQYFDKNPKAGSIFAFLPLLFS 258 Query: 257 KFQLLEKIHIIKECSNIS 274 FQ L + +N + Sbjct: 259 FFQNLLIAYYAPNKNNEA 276 >gi|254253253|ref|ZP_04946571.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895862|gb|EAY69742.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 364 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRTAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKALAAAGNPDALLLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIKRGA-AAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307 >gi|291543002|emb|CBL16112.1| DNA polymerase III, delta subunit [Ruminococcus bromii L2-63] Length = 347 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 130/340 (38%), Gaps = 31/340 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ YGS++ + + + ++ F+ + + + + Sbjct: 20 PVYLIYGSEQMFVKSYTKKLCEAVAGKNPSDFNYHTFSGD---IDFQELAASLQIMPFMA 76 Query: 82 KKKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFT 135 ++ +++ ++ + K LD L+E+ + ++II K + + ++ Sbjct: 77 ERNCVVVTDIYFDNMVKDRLDTLKELTSRAWDGTVLIISMPTYVPSKNKTSFTALIKRVE 136 Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + ++ C+ N + + + K IS +++N+G D +NE+ K+++Y Sbjct: 137 KIGSVCCFEKINSQIIEKYVAKWANENGKLISHLNASKIISNVGDDLNLLKNEVNKIAAY 196 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + IT++ + + ++ + I G+ A D + +L+ Sbjct: 197 AKGE-EITDRDIDLLSTVNLEARTYDMADDVINGRGDRAFRKLDTLFCQREEPINILYAL 255 Query: 255 LQKFQLLEKIHIIKECS-----------NISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + ++ + ECS + ++ + ++ + + E+LR + Sbjct: 256 SSAYVDAYRMRVADECSVSKETVAKDFAYKNRAFVLNRARTSV--SRTS--TEALRK-SL 310 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 +++ ET K+ R +L + +I + +L IA+ Sbjct: 311 DVLVETDEKLKSVSVNQR---FLIEQLISRLLL-IAKEGR 346 >gi|33593065|ref|NP_880709.1| DNA polymerase III subunit delta [Bordetella pertussis Tohama I] gi|33563440|emb|CAE42321.1| putative DNA polymerase III, delta subunit [Bordetella pertussis Tohama I] gi|332382477|gb|AEE67324.1| DNA polymerase III subunit delta [Bordetella pertussis CS] Length = 351 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 101/286 (35%), Gaps = 14/286 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + L+ E + + + + +V++A + + S S SLF Sbjct: 23 PLYTVSGDEPLLVTEAADAIRAAARAAGYTDRTSMVMDA---RSDWSAVAAATQSVSLFG 79 Query: 82 KKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 ++++ ++ S + + ++ + + ++++ + K K A+ Sbjct: 80 DRRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALA 139 Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ + + L I L + Q + + G+ +A+ E+QKL Sbjct: 140 RGGVMADIANVERGRLPAWIGMRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGL- 198 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + + V+ + + + + +A + G + + D A +L Sbjct: 199 LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAV 258 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ++ +LL ++ ++++ I + ++L Sbjct: 259 GEEIRLLARV-AQARQQGQDAGALMRRLR--IFGAHERLALQALGR 301 >gi|121606657|ref|YP_983986.1| DNA polymerase III subunit delta [Polaromonas naphthalenivorans CJ2] gi|120595626|gb|ABM39065.1| DNA polymerase III, delta subunit [Polaromonas naphthalenivorans CJ2] Length = 367 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 95/267 (35%), Gaps = 14/267 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L+ E + + + ++ + + S S SLF+ Sbjct: 19 LYTLHGDEPLLVQEFADALRAAARQRGYTERTVHTVAGAHF--DWSEVLASGGSLSLFAD 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K+I+ + + K L+++ + + + ++ + T + Sbjct: 77 KQIVEVRIPSGKPGKDGSVALQQLAERAQGDDSTLTLVMLPRLDGATTKGAWFGALESFG 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLS 192 + + P ++ L I + L + + ++ + Q + G+ +A+ E+QKL+ Sbjct: 137 VTVKFEPIDRRTLPQWIAQRLQLQGQRVANGEEGQRTLQFFADRVEGNLLAAHQEIQKLA 196 Query: 193 -SY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 Y D +++ V++ + + + ++ A + G A + D + + Sbjct: 197 LLYPVTGDGILSFDQVENAVLNVARYDVFKLSEAVLGGHAIRAARMIDGLQSEGESEVLV 256 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277 + + ++++ + Sbjct: 257 HWALAEDIRSMKRVRDAIQAGRPMPMA 283 >gi|194098007|ref|YP_002001055.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae NCCP11945] gi|239998471|ref|ZP_04718395.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02] gi|240013596|ref|ZP_04720509.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI18] gi|240080177|ref|ZP_04724720.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19] gi|240115131|ref|ZP_04729193.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18] gi|240117414|ref|ZP_04731476.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1] gi|240120666|ref|ZP_04733628.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID24-1] gi|240125222|ref|ZP_04738108.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679] gi|260441052|ref|ZP_05794868.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2] gi|268594331|ref|ZP_06128498.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02] gi|268596326|ref|ZP_06130493.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19] gi|268600804|ref|ZP_06134971.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18] gi|268603109|ref|ZP_06137276.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1] gi|268683818|ref|ZP_06150680.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679] gi|291044385|ref|ZP_06570094.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2] gi|193933297|gb|ACF29121.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae NCCP11945] gi|268547720|gb|EEZ43138.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02] gi|268550114|gb|EEZ45133.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19] gi|268584935|gb|EEZ49611.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18] gi|268587240|gb|EEZ51916.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1] gi|268624102|gb|EEZ56502.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679] gi|291011279|gb|EFE03275.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2] gi|317163752|gb|ADV07293.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae TCDC-NG08107] Length = 332 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 87/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + +A + + S LF+ Sbjct: 16 PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGSAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 + + + + ++ A ++G + L D +A + Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272 >gi|293371581|ref|ZP_06617996.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CMC 3f] gi|292633444|gb|EFF52012.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CMC 3f] Length = 339 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 IT + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRITPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + + +I+ + + I Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337 >gi|260175030|ref|ZP_05761442.1| hypothetical protein BacD2_24451 [Bacteroides sp. D2] gi|299145627|ref|ZP_07038695.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_23] gi|315923261|ref|ZP_07919501.1| conserved hypothetical protein [Bacteroides sp. D2] gi|298516118|gb|EFI39999.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_23] gi|313697136|gb|EFS33971.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 339 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 42/325 (12%), Positives = 114/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ + ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ + + +I+ + + I Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337 >gi|42526243|ref|NP_971341.1| hypothetical protein TDE0729 [Treponema denticola ATCC 35405] gi|41816355|gb|AAS11222.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 338 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 63/340 (18%), Positives = 128/340 (37%), Gaps = 23/340 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +++ V++F G + G ++ K +S Y D + V ++ + S Sbjct: 1 MANPVWLFMGPEIGERNTAVDTVLKTLSKQYGDIETHTVYAGDAGMGDVISLLQNA---S 57 Query: 79 LFSKKKIILIENLSTEKKV--LDCLEEII-----IKNICNHIIIIKSNEIKKNNTLRKIA 131 LFS K+I++++ KK +D L + I +N + +I+ S+E + +KI+ Sbjct: 58 LFSSAKLIILKSAELIKKKEDIDLLTDWIQSVSKKENTSDSFLILISDE---TSIAKKIS 114 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + + + + L I EA LL + + A + L Sbjct: 115 DTVPKTQQKIFWELFENKKQEWVRSFLFREGIEIEDEAVDELLELVENNTDALKMACSHL 174 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---- 247 Y + I +++++ + + NA G + A+ ++ + SK S Sbjct: 175 VLYFQKGSHIDQENIEKLFAHNKEETPFSLFNALTMGSLETALSISQKIILSKNSSPVQI 234 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A L ++ Q KIH E + K K + + + ++WN+ Sbjct: 235 IAGLSYCFRRLQDWHKIHRDNEYLDDFALKRFGFLGKTALAQYK----RAAKLWNEVQCV 290 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + R +NI+ LY + ACK+ N Sbjct: 291 KIIALLSETDLELRSLGTSLQNIVMDMCLY--EIACKSGN 328 >gi|295394826|ref|ZP_06805041.1| DNA-directed DNA polymerase III delta subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972422|gb|EFG48282.1| DNA-directed DNA polymerase III delta subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 325 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 113/325 (34%), Gaps = 22/325 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + GS+ L+ + + + + V L+A + + + SLFS Sbjct: 16 PLAVVSGSEAVLVRKTLERISAKVDSDVER----VRLDASHYE--PGSLLQACMA-SLFS 68 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--AEKFTSV 137 +K +++++L + + + D L + N ++ + + L K A+ + Sbjct: 69 AQKYVVVDSLESMSDDFLADALSYVGDANPDAVVVFLHGGG-NRGAKLLKALAAQGAPTY 127 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 A D + D +SI +A L++ L D +++L Sbjct: 128 DATPLKTDAQKS--DFATGEFKRAGRSIEPDAFASLMSALSADVSELAAGIEQLL--SDT 183 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I V+ ++ +A I GK A+ L L + L+ K Sbjct: 184 QGTIDRATVEKYYAGRIEASGFKVADAAIAGKRAEALSLLRHALETGTDPVPLVATIAMK 243 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L K+ ++ + ++ P + + + LR W+ + + + Sbjct: 244 LRQLAKVGGMRGSAGQLAGELKMA------PWQIDKARRELRYWSPEALGDAIMLTAWAD 297 Query: 318 HLARKKKYLEKNIIFQTILYIAQTA 342 H + + + + IL +A+ A Sbjct: 298 HAVKGGGRDPEYAVERLILGVAEYA 322 >gi|289422291|ref|ZP_06424142.1| DNA polymerase III, delta subunit [Peptostreptococcus anaerobius 653-L] gi|289157296|gb|EFD05910.1| DNA polymerase III, delta subunit [Peptostreptococcus anaerobius 653-L] Length = 343 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 120/319 (37%), Gaps = 26/319 (8%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ + IQ+ KN +++ YG + LI EL ++FK + D F+ V+++ E Sbjct: 1 MKREELIQQLDKNDLD--KIYVLYGKEIYLIKELEDKFKALANPATLD-FNQVIIDGKET 57 Query: 64 QKNISTFWNEINSTSLFSKKKIILIEN----LSTEKKVLD----CLEEIIIKNICNHIII 115 NI + + + +++ I+I++ +K D L EI+ +I+ Sbjct: 58 --NIDMIQSAVETLPFMDERRYIIIKDFELFKGRKKNFNDNDEKKLLEILESAPETSLIV 115 Query: 116 I-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + E+ + K KF +++ + D + L++ + + +I ++ Sbjct: 116 FAQYEEVDTRRSFFKKLGKFANMVELKKLED--VQLLNWSRQIFNKYRVNIENSVIAYMV 173 Query: 175 ANLG-----GDRIA--SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 G D NE++KL + + + + + ++ D + + + Sbjct: 174 ETSGYSDKKSDMNLMDLENEIKKLCVFVGDAGRVDKSIIDQMMKDKVENDVFKFLYYMSS 233 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 ++ L + + S ++ ++ + +I + + + I Sbjct: 234 KNSKMSVKLLEDMIDSGESGLGIIFLITRQVYNIIQIK-RMQKERMPYNIIRDNMGMPSF 292 Query: 288 PMKRNILQESLRIWNKNLV 306 + + L +++ ++ Sbjct: 293 VVNK--LSRQANNFSEEIL 309 >gi|33862347|ref|NP_893907.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9313] gi|33640460|emb|CAE20249.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 336 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 32/333 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D I ++ +L L+ + + E + S Sbjct: 2 PIHLIWGDDAAARDHAIETLIGDVVDQAWSSINLSRLDGADAGQASQALA-EARTPPFGS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII-----------KSNEIKKNNT 126 +++L++ + ++ + E+++ +++ + ++K Sbjct: 61 GGRLVLLQRSPFCNACPSELANRFEDVLDLIPETSHLVLCNPNKPDGRLRTTKALQKLVK 120 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L++ +EK + AI + +L+E + + EA L+ +G D Sbjct: 121 LKQASEKSFLLPAIW----DGAGQQELVERTARDLGLQLEPEATAALVEAIGNDSTRLTA 176 Query: 187 ELQKLSSYC----------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 ELQKL+ + LI ++V +I ++ + ++ + G AI Sbjct: 177 ELQKLALHADIRQESATENQSPTLIKAENVAALIEGMATNALQ-VGDSLLAGHAGEAIAR 235 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D L + P+ ++ + + + ++++ I + P + ++++ Sbjct: 236 LDALLDAGEPALRIVATLTGQIRGWLWVSLLEQQGERDVNVIAKAAGIG-NPKRIYVMRK 294 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329 L+ L ++ ++ Sbjct: 295 QLQGRPPQRFLTLLSRLLEVEAALKRGAIPTDA 327 >gi|255325517|ref|ZP_05366619.1| DNA polymerase III, delta subunit [Corynebacterium tuberculostearicum SK141] gi|255297455|gb|EET76770.1| DNA polymerase III, delta subunit [Corynebacterium tuberculostearicum SK141] Length = 325 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 112/339 (33%), Gaps = 36/339 (10%) Query: 22 FVFIFYGSDKGLIFELIN-----QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 V + G D+ L E + P L L A E+ + E S Sbjct: 6 PVHLILGDDEFL-TERARLQIQRAAAEESGSNGTRP-ELTKLKASEVSEGE---LLEATS 60 Query: 77 TSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN------- 124 SLF ++I+I + K+V+D L ++I + +KK Sbjct: 61 PSLFGDNRVIVISDCERAGKEVVDILLRACANPAPGMTMVIIYSVTAKTLKKKKKQPELV 120 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LRKIAE S YP+ L + + +L +G D Sbjct: 121 AKLRKIAEVHE---VFSLYPNE---LGQWATREFSSHGVRPTPDVIHAVLEGVGSDLREL 174 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L S + +T + V++ + +I +A + G++ A+ L Sbjct: 175 ASAISQLVSDTGGN--VTREAVQNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLG 232 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 A+ K + +++ + + ++ M + + R W+ + Sbjct: 233 ASPVAIAAALANKVGAVARLYSARGDQYSLASQT--GLAPYVVKMTQPVA----RRWSAD 286 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 V + + + + + + + + +A+ A Sbjct: 287 NVTKAVILVSELDAAVKGQGGEPEFALEAAVKRVAELAR 325 >gi|15603081|ref|NP_246153.1| DNA polymerase III subunit delta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721570|gb|AAK03300.1| HolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 359 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 116/310 (37%), Gaps = 14/310 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F G D L+ E ++ + D +++ ++ N S + S LF Sbjct: 19 KLYYFVGQDPLLLSENQDRINQYAFKQGFDEKNVITIDQ---NTNWSDLFERCQSIGLFF 75 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + + L+E+I + ++I++ ++ K + + Sbjct: 76 NKQILFLNLPENLSASLQTRLQELISLLNDDILLILQLPKLNKATEKQTWFIQANQYEPE 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + C L I I ++A Q+L + + +A + LQ L+ Sbjct: 136 AVLVHCQTPTIEQLPRWIALRAKSMGLQIEEQAIQLLCYSHENNLLALKQSLQLLAL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ V+ I T V + ++A ++GK A + + A +M LL + Sbjct: 195 PDNKISYARVQSTIAQTSVFTPFQWLDALLEGKSKRAQRILEGLKAEEMEPIILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 L + H + + + ++ ++ ++ + +R ++ + N + + Sbjct: 255 DLLTLLGLAKPSHPVTLTTPLPAHQLREQFDQLKVWQNRRPFFTQAFKRLNYKQLYLIIQ 314 Query: 312 KIDHRIHLAR 321 + LA+ Sbjct: 315 ALAEIERLAK 324 >gi|50086112|ref|YP_047622.1| DNA polymerase III subunit delta [Acinetobacter sp. ADP1] gi|49532088|emb|CAG69800.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA) [Acinetobacter sp. ADP1] Length = 331 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 139/331 (41%), Gaps = 32/331 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 K + + +I +G + L L++ F+K+ + + + +N + Sbjct: 10 KRVDAARGAWIIHGQEPLLEQNLLDAFRKSWQTQ---EIERQRYDIGSV-SDWKNVFNGL 65 Query: 75 NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129 NS SLFS++ I + N+ + + L+ + N N ++++ ++ +K ++ + Sbjct: 66 NSLSLFSQQLAIEVHGNIKPDASGIKQLKSYLQHNEHNLLLVVLPKQDASSLK--SSFFQ 123 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 E + + + YP ++ ++ + + ++A L+ + + +A++N L Sbjct: 124 TVEANGVIAHLSAQYPQDRQ---RILAQEAEKIGIQLDQDAWTWLMQHHEHNLLAAKNSL 180 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++S E LI + + + D ++ +A ++G + ++ + + + + P Sbjct: 181 MRVSDTFPEHQLIQIEQLYACLQDQSRYTTYDLSDAMLRGNLAQSVKIFQYLIGAGEPHS 240 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR- 307 +L ++ +LL ++ FE+ + I K + Q++LR N + Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPQNALQLGIWKTKVSDYQQALRRLNPHHFLS 290 Query: 308 --ETLHKIDHRIH-LARKKKYLEKNIIFQTI 335 L +ID I ++ + +++I Q + Sbjct: 291 WPTLLLRIDSAIKGMSDENP---EHLILQAL 318 >gi|29346299|ref|NP_809802.1| hypothetical protein BT_0889 [Bacteroides thetaiotaomicron VPI-5482] gi|253568281|ref|ZP_04845692.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338194|gb|AAO75996.1| DNA polymerase III-like, delta subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251842354|gb|EES70434.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 339 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEESYYIDLIADYITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + + Sbjct: 79 SEHQVVVVKEAQAVRNI-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGIDMEPKATAMLADFVGSDLSRLTGELEKLIITLPTG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + R+ ++R ++ + + +I + Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLR--TTWQARD-YAIAMRKYSGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ K + +I+ + + I Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337 >gi|33596361|ref|NP_884004.1| DNA polymerase III subunit delta [Bordetella parapertussis 12822] gi|33602353|ref|NP_889913.1| DNA polymerase III subunit delta [Bordetella bronchiseptica RB50] gi|33566130|emb|CAE37030.1| putative DNA polymerase III, delta subunit [Bordetella parapertussis] gi|33576792|emb|CAE33871.1| putative DNA polymerase III, delta subunit [Bordetella bronchiseptica RB50] Length = 351 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 101/286 (35%), Gaps = 14/286 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + L+ E + + + + +V++A + + S S SLF Sbjct: 23 PLYTVSGDEPLLVTEAADAIRAAARAAGYTERTSMVMDA---RSDWSAVAAATQSVSLFG 79 Query: 82 KKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 ++++ ++ S + + ++ + + ++++ + K K A+ Sbjct: 80 DRRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALA 139 Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ + + L I L + Q + + G+ +A+ E+QKL Sbjct: 140 RGGVMADIANVERGRLPAWIGMRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGL- 198 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + + V+ + + + + +A + G + + D A +L Sbjct: 199 LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAV 258 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 ++ +LL ++ ++++ I + ++L Sbjct: 259 GEEIRLLARV-AQARQQGQDAGALMRRLR--IFGAHERLALQALGR 301 >gi|284036851|ref|YP_003386781.1| DNA polymerase III subunit delta [Spirosoma linguale DSM 74] gi|283816144|gb|ADB37982.1| DNA polymerase III, delta subunit [Spirosoma linguale DSM 74] Length = 344 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 43/333 (12%), Positives = 115/333 (34%), Gaps = 25/333 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ +G + + + + +K F+ VL E + N + Sbjct: 19 PVYLIHGDEPYYLDRIAEELEKVAVPVAERGFNQFVLFGKET--DAGAVLNYARRYPFMA 76 Query: 82 KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIII----KSN--EIKKNNTLRKI 130 +++++L++ N +K E+ + + + I+++ + + + K Sbjct: 77 ERQLVLVKEAQQLNGINDKSTQTLFEDYALNPLPSTILMLCYVKEDGKPGLDERKAWVKA 136 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +L + DN + D + E +S +A Q+L ++G D E+ K Sbjct: 137 FGAKGKLLGVKKLYDN--KIPDWVGEYCREQGAKVSPKACQLLADHIGNDLKRLAGEIDK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSH 248 + I+ V+ ++ + + E+ A +Q + A + D+F + P Sbjct: 195 ILINLHVGEEISAATVERLVGISKEYNVFELQKALVQRDVVKANQIVDYFGRNPKDNPLV 254 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L F + + K+ ++ ++ + R + V Sbjct: 255 VILAQLFGYFSKVILVQASKDQTDKGLAPLLG--VNPFFVKD---YLSAARTFPLPKVAA 309 Query: 309 TLHKIDHRIHLAR--KKKYLEKN-IIFQTILYI 338 + I ++ + ++ I+ + + + Sbjct: 310 IISAIRRADARSKGIDSPTMNESDILRELVFEV 342 >gi|204930508|ref|ZP_03221438.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320442|gb|EDZ05645.1| DNA polymerase III, delta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 343 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 94/266 (35%), Gaps = 20/266 (7%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + + ++ + SLF+ ++ ++ + + + L + + + I + Sbjct: 60 DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLL------LILR 113 Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 N L K E +A++ C + L + + A Q+L Sbjct: 114 GNKLTKAQENAAWYIALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYC 173 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 G+ +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LL ++ LL + ++ ++ + K + +R ++ + Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGD 288 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322 +L+ + +R+ + + ++ Sbjct: 289 ALQRLHPAQLRQAVQLLTRTEITLKQ 314 >gi|187925351|ref|YP_001896993.1| DNA polymerase III subunit delta [Burkholderia phytofirmans PsJN] gi|187716545|gb|ACD17769.1| DNA polymerase III, delta subunit [Burkholderia phytofirmans PsJN] Length = 372 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 105/289 (36%), Gaps = 21/289 (7%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 +++ YG + L E I + T F++ + S+ S SL Sbjct: 19 LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVER------GFDWSSLLGASQSMSL 72 Query: 80 FSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F ++++ I + K+ D L+ + + + +I + + Sbjct: 73 FGDRQLVELRIPSGKPGKEGADALKALAAAVNDDVLTMITLPRLDVATQKSAWFTALSDA 132 Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKL 191 +A+ P + L + + + L + ++ + A + + G+ +A+ E+QKL Sbjct: 133 GVALKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 ++ + V+D + + + ++ A + G + + D + +L Sbjct: 193 GL-LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 +++ + L +I + + ++++ + + ++ +L Sbjct: 252 WAVVEEVRTLLRIKRGV-AAGKALAMLVRENR--VWGPRERLIGPALSR 297 >gi|329954858|ref|ZP_08295875.1| DNA polymerase III, delta subunit [Bacteroides clarus YIT 12056] gi|328526962|gb|EGF53973.1| DNA polymerase III, delta subunit [Bacteroides clarus YIT 12056] Length = 339 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++T N + Sbjct: 21 RPIYYLMGEEPYYIDLISDYITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE S + Sbjct: 79 SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKSGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 IT + ++ I + E+ +A ++ + A + +F + P L Sbjct: 196 QTRITPEQIEHNIGISKDYNNFELRSAIVEKDVLKANRIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E S + R L ++R +N + + +I + Sbjct: 256 GFFSNLMLAYYAPEKSEQGIAAFLGLKSP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338 ++ L ++ + + I Sbjct: 312 ADAKSKGVGNSSLNDGALLRELVFKI 337 >gi|148828100|ref|YP_001292853.1| DNA polymerase III subunit delta [Haemophilus influenzae PittGG] gi|148719342|gb|ABR00470.1| DNA polymerase III subunit delta [Haemophilus influenzae PittGG] Length = 344 Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLTKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + LA+++ Sbjct: 315 ELANIERLAKQE 326 >gi|325970607|ref|YP_004246798.1| DNA polymerase III subunit delta [Spirochaeta sp. Buddy] gi|324025845|gb|ADY12604.1| DNA polymerase III, delta subunit [Spirochaeta sp. Buddy] Length = 343 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 117/341 (34%), Gaps = 23/341 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S ++ G + G + + + + Y + L E + + +N+ S Sbjct: 1 MSERAYLLLGPEAGAKEQELKDIRTRLRTEYGNEIELSRFYPFETEN--GEIFTVLNNNS 58 Query: 79 LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LFS +++++ S ++ L + + + ++I S+E+ + + K+ K + Sbjct: 59 LFSDYRLVMLSQADSMSSSLVQALADYLAHPVDTATLVILSSELSVSQKIMKLVPKQNTK 118 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY--C 195 + Y + D I SI+ +A +L+ + R +L + Sbjct: 119 I---FYDLLETQKADWIRNHFRRMGLSITADAVDLLMDMTEDNTQELRTICNQLGLFWQI 175 Query: 196 LEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252 E I+++ V+ I + + + + ++ L S L+ Sbjct: 176 GEKGRPISDEDVQTYIHHSRQEDAFTLFPLIARCDLKQSLKSLSAMLGSGDSQTPILLVS 235 Query: 253 GFLQKFQLLEKIHII--------KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 G L +F+ L I + S + + + K R ++ ++ Sbjct: 236 GLLWQFRRLLSIAEELSLGSSESEAFSKANVQGKVSAIRKP---KDRTTYHDATLAYDLA 292 Query: 305 LVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344 +R + + ++ L ++ + + I + K Sbjct: 293 SIRLIITALAEADIQVKEASSELTPLVLERLLYRIIKGKGK 333 >gi|297160558|gb|ADI10270.1| DNA polymerase III, delta subunit [Streptomyces bingchenggensis BCW-1] Length = 328 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 96/282 (34%), Gaps = 10/282 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ N + ++ + ++++ + K Sbjct: 55 PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKGYLSAPAEEITLVLLHAGGAKGK 113 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRAEFRATGRSATPEACQALVDAIGSDLREL 172 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + +L + I E V + + ++G+ A+ + +A+ Sbjct: 173 ASACAQLV--ADVEGTIDEAVVARYYTGRAEASSFTVADRAVEGRTAEALEALRWAVATG 230 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + ++ P K + +++ +R W+ + Sbjct: 231 VAPVLITSALAQGVRAIGKL--ASAPRGARPGDLARELGMP--PWKIDRVRQQMRGWSAD 286 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 V L + + + + + ++ +A+ A Sbjct: 287 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVTVARAARAGR 328 >gi|241767228|ref|ZP_04764972.1| DNA polymerase III, delta subunit [Acidovorax delafieldii 2AN] gi|241362116|gb|EER58220.1| DNA polymerase III, delta subunit [Acidovorax delafieldii 2AN] Length = 351 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 95/299 (31%), Gaps = 16/299 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ +G + L E + + + S + + S S SLF+ Sbjct: 19 LYVLHGDEPLLQQEAADAIRATARAQGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFAD 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K+I+ I + K L+++ N + ++ + K + Sbjct: 77 KQIVEIRIPSGKPGKDGSVALQQVAESAKGNDSTLTLVMLPRLDKATKTGAWFAALEANG 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLS 192 I P + L I + L + + + Q + G+ +A+ E+QKL+ Sbjct: 137 TTIQIDPIERAQLPQWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQKLA 196 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +T+ V+ + + + ++ + + G+ + D A + Sbjct: 197 L-LHPAGELTQAQVEAAVLNVARYDVFKLSESVLAGQTARVQRMLDGLQAEGEAEVLVHW 255 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + L+++ + + I K + + L + + L Sbjct: 256 ALAEDIRALKRVKDAMNAGRPLPMALRENR---IWGPKERLFERILPKASDAALARLLQ 311 >gi|237785925|ref|YP_002906630.1| DNA polymerase III subunit delta [Corynebacterium kroppenstedtii DSM 44385] gi|237758837|gb|ACR18087.1| DNA polymerase III delta subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 350 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 105/319 (32%), Gaps = 25/319 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--YHDPFSLVVL 58 MA + + V I G++ L + K + D ++ + Sbjct: 15 MAPSRRSRTTFDPAEGSGAPAPVHIIVGTEDFLADRHRHAIVKRVRENSPTGDELTVTTV 74 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN--HIIII 116 A +I T E+ S SLF + +I++I N++ K L K+ +II Sbjct: 75 RAGDITAPELT---ELLSPSLFGEDRIVVITNMNDAGKEPASLVLAAAKDPAPGITLIIQ 131 Query: 117 KSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 S E + + L K+ E+ AI L ++ + +S + L Sbjct: 132 HSGEGRTKAMLSKLLKLGEEHR-ADAIP-----VRELPTFVQSEFRRFRVRVSPDVVSAL 185 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + ++G + + + +L D + + V+ T + I + I G + + Sbjct: 186 IESVGSNVRELASAVSQLV--ADNDGNVDLEAVRRYYTGTAEVSSFSIADDVIAGNVDQS 243 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRN 292 + L + A+ + + ++ I + + + Sbjct: 244 VAKVRRALQLGVAHMAISTAVCRGISEVARL---SGNRRIDPYRDASRLGMPPWKLKRTA 300 Query: 293 ILQESLRIWNKNLVRETLH 311 + + W++ + E + Sbjct: 301 PIAQ---RWSQAAIAEAVQ 316 >gi|301310207|ref|ZP_07216146.1| DNA polymerase III, delta subunit [Bacteroides sp. 20_3] gi|300831781|gb|EFK62412.1| DNA polymerase III, delta subunit [Bacteroides sp. 20_3] Length = 340 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I ++ + K++ F+ ++L + + + N + S Sbjct: 22 PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 + ++I++ + + + L + + + I++I + + L +K Sbjct: 80 EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193 Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + ++ I + E+I A I A +A +F + P L Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECS 271 F L + K+ S Sbjct: 254 VLFNYFSNLLICYYSKDRS 272 >gi|227548753|ref|ZP_03978802.1| DNA polymerase III, delta subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227079165|gb|EEI17128.1| DNA polymerase III, delta subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 314 Score = 72.7 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 110/324 (33%), Gaps = 16/324 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + V + G D+ L E + + + P + L A ++ + S SLF Sbjct: 6 NPVHLVLGEDEFL-AERATKTIIDAAADGAAP-EVSRLRAGDVTEAELLM---ATSPSLF 60 Query: 81 SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++++++ K+ + L + +II+ +N + +K V Sbjct: 61 AEQRVVVFTGAEQAGKEPTELLLQAARDPAPGMTLIIEHTGGGRNKSYVAKFKKVAEVHT 120 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + D + + + LL ++G D +L + Sbjct: 121 VDPLRD--RDRHAWLNNEFRRLGAHPTPDVVAALLESVGSDLRELATAASQLV--ADTEG 176 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T + V + +I + + G+ A+ L + AL +K Sbjct: 177 ELTVRSVHAYYSGVAEISGFDIADLAVAGRAERALASTRRALQLGISPVALAAALARKVS 236 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + K++ + + ++I ++ + K+ + ++ R W+ V E + I + Sbjct: 237 DIAKLY----STRGNPDQIARELGMHPFVAKKTM--QAARTWSGEAVSEAVIVIANLDAE 290 Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343 + + I + IA+ A Sbjct: 291 VKGQGGDPDYAIEHAVRRIAELAR 314 >gi|303233662|ref|ZP_07320316.1| DNA polymerase III, delta subunit [Finegoldia magna BVS033A4] gi|302495096|gb|EFL54848.1| DNA polymerase III, delta subunit [Finegoldia magna BVS033A4] Length = 332 Score = 72.7 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ N LS+ + + +G +K I + ++ K++ + D + L + Sbjct: 6 AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55 Query: 70 FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121 ++ + +FS K++ILI +S K +D L I +III S + Sbjct: 56 IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-----SISKEAKQILLAN 176 K+ L+ E I N+ I L + +I E L+ N Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 I NEL K + LE ITEQ + +I + + I ++ ++ Q + I Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D + S LH ++ F+ L + + +S +I +K + I + N +Q Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISSYELNKIQN 286 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323 ++IW + +R +HK+ + Sbjct: 287 FVKIWRYDQLRFAIHKMYEIEITLKSN 313 >gi|150007757|ref|YP_001302500.1| hypothetical protein BDI_1115 [Parabacteroides distasonis ATCC 8503] gi|256840023|ref|ZP_05545532.1| DNA polymerase III, delta subunit [Parabacteroides sp. D13] gi|298375702|ref|ZP_06985659.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_19] gi|149936181|gb|ABR42878.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256738953|gb|EEU52278.1| DNA polymerase III, delta subunit [Parabacteroides sp. D13] gi|298268202|gb|EFI09858.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_19] Length = 340 Score = 72.7 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I ++ + K++ F+ ++L + + + N + S Sbjct: 22 PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 + ++I++ + + + L + + + I++I + + L +K Sbjct: 80 EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193 Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + ++ I + E+I A I A +A +F + P L Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECS 271 F L + K+ S Sbjct: 254 VLFNYFSNLLICYYSKDRS 272 >gi|255013534|ref|ZP_05285660.1| hypothetical protein B2_06470 [Bacteroides sp. 2_1_7] Length = 340 Score = 72.3 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I ++ + K++ F+ ++L + + + N + S Sbjct: 22 PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 + ++I++ + + + L + + + I++I + + L +K Sbjct: 80 EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193 Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + ++ I + E+I A I A +A +F + P L Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECS 271 F L + K+ S Sbjct: 254 VLFNYFSNLLICYYSKDRS 272 >gi|198274668|ref|ZP_03207200.1| hypothetical protein BACPLE_00824 [Bacteroides plebeius DSM 17135] gi|198272115|gb|EDY96384.1| hypothetical protein BACPLE_00824 [Bacteroides plebeius DSM 17135] Length = 338 Score = 72.3 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 118/326 (36%), Gaps = 15/326 (4%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ I ++ KN + V+ G + I + + + F+L V Sbjct: 1 MAKEVTYEEIVRNLKNRIYA-PVYFLMGEEDYYIDRIADYIIDTVLSETEKEFNLTVTYG 59 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 + +++ N + S+ ++++++ + K++ + L + K + I+++ K Sbjct: 60 ADT--DVANVINAAKRYPMMSEYQVVVVKEAQSLKRI-EELAFYLQKPQKSTILVVCYKH 116 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 I + L AE + + + I L + I +A +++ +G Sbjct: 117 GSIDRRKKL--AAEIEKNGVLFESRKLKDSQIPGFISSYLKRKKVEIEPKASEMMAEFVG 174 Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D EL+KL IT + ++ I + E+ +A ++ + A + Sbjct: 175 ADLNRMAGELEKLILTLPEGARRITPEQIERNIGISKDYNNFELRSALVEKDVLKANKII 234 Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 +F + P L F L + E S+ + + + Sbjct: 235 KYFEENPKNNPLQMTLAILFNFFSNLMLAYYAPEKSDQGIAAQLGLKSP---WQAKEYMA 291 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321 ++R ++ V + +H I ++ Sbjct: 292 -AMRRYSGVKVMQIIHAIRECDARSK 316 >gi|221069984|ref|ZP_03546089.1| DNA polymerase III, delta subunit [Comamonas testosteroni KF-1] gi|220715007|gb|EED70375.1| DNA polymerase III, delta subunit [Comamonas testosteroni KF-1] Length = 350 Score = 72.3 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%) Query: 76 STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131 S SLF+ K+I I I + K L+++ N + +I + K Sbjct: 70 SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATKTGAWF 129 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185 + ++I P + L I + L + + ++ + Q + G+ +A+ Sbjct: 130 GALDGNGVSIQVDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E+QKL+ + ++ V+ + + + ++ A + G++ ++ + D A Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + ++++ + RIW Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290 Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329 + ++ R+ AR + L+ Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313 >gi|163785168|ref|ZP_02179858.1| hypothetical protein HG1285_10983 [Hydrogenivirga sp. 128-5-R1-1] gi|159879562|gb|EDP73376.1| hypothetical protein HG1285_10983 [Hydrogenivirga sp. 128-5-R1-1] Length = 332 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 126/326 (38%), Gaps = 25/326 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M K ++K+ + L + V YG + L + I++F K++ +H F L Sbjct: 1 MKEENIVKLLKKNISEINL-NPVIYIYGGEDLLKKQFIDKF-KSVGSNFH--F----LWG 52 Query: 61 LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEII-----IKNICNHI 113 E+ N++ + S SLFS + + + + K D ++E + I + Sbjct: 53 DEV--NLTELKDIFGSASLFSSENVAVLWDIDSFVSKLSKDAVKEFLNFIKGINSPNKLF 110 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 ++ K ++ + I ++ I+ + + + K+IS E + L Sbjct: 111 LVSKKEKVPAKEPFKTI---SSTATVINSPHLTPKAFELSVYKKIQREGKNISLENLKYL 167 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 ++ L + ++ E++KL Y E IT++ + +I + I N ++ I NA Sbjct: 168 ISKLPNNLYNTKQEIEKLLIYTAEKNEITKEDIDAVITTKPQVNIFVFQNQFLKKDI-NA 226 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRN 292 + + + L LL KI K+ + K + ++ I ++ Sbjct: 227 VSTFQRLVEEGQHPFEIQSFILN---LLNKIIYFKDLIDKGTPKQLAFSKVGINYRPQQL 283 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIH 318 ++ + +W K+ + + + Sbjct: 284 AVENASNVWKKSELLNAIKYLYETEK 309 >gi|169834754|ref|YP_001715788.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408861|gb|ACA57271.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 327 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 20/247 (8%) Query: 33 LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 LI + + F K + + ++ ++ I++ + F IN+ K++IL+ Sbjct: 17 LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75 Query: 89 EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139 E + K ++ L + + + + S I KN+ ++K + ++ Sbjct: 76 ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + +I+ EA + + IA E++KL CL Sbjct: 136 GEFQSD---YVKKVCNSIFAKHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + + + I + I ++ ++ + + L ++ + L + Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249 Query: 260 LLEKIHI 266 +L++ + Sbjct: 250 MLQEARL 256 >gi|255034858|ref|YP_003085479.1| DNA polymerase III, delta subunit [Dyadobacter fermentans DSM 18053] gi|254947614|gb|ACT92314.1| DNA polymerase III, delta subunit [Dyadobacter fermentans DSM 18053] Length = 339 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 100/262 (38%), Gaps = 14/262 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + I + + + + F+ VL + +++ + Sbjct: 18 RPLYFLHGDEPYYIDAIAEELENKVVPESERGFNQFVLYGKDT--DMAGVLSYARRFPFM 75 Query: 81 SKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133 ++++++L++ N +K+ LE+ + + + +++ +N ++ + L K Sbjct: 76 AERQLVLVKEAHRLNGIEQKEQQQRLEDYALNPVPSTVLVFCYHANADERKSYL-KAC-- 132 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + + L D + IS +A Q+L+ N+G D NE++K+ Sbjct: 133 NANGVVVQSKKMYDNKLPDWVASFCQHEGVKISPKAVQMLVDNIGNDLKRLSNEIRKIMV 192 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHA-LL 251 D I ++ + + + E A + + A +A FF ++ K A +L Sbjct: 193 NLRVDEGIDASAIEKFVGISKEYNVFEFQKALMHRDVLKANQIAAFFASNPKDNPLAPVL 252 Query: 252 HGFLQKFQLLEKIHIIKECSNI 273 F L H ++ S Sbjct: 253 IILFGFFSKLLLTHAARDKSEK 274 >gi|298373218|ref|ZP_06983208.1| DNA polymerase III, delta subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276122|gb|EFI17673.1| DNA polymerase III, delta subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 342 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 118/332 (35%), Gaps = 36/332 (10%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MA +++ ++ ++ G + I ++ + ++N + V+ Sbjct: 14 MADLKAGRYA-----------PIYFLMGDEPYFIDKISDYIEQNAVAEDERDMNQTVMYG 62 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118 +++ I E +++++++++ K+ +D LE + + ++ K Sbjct: 63 KDVK--IEDVIIEARRYPFMAERRVVIVKEAQNLKRNIDKLELYLKAPVQTTTLVFCYKY 120 Query: 119 NEIKKNNTLRKIAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 +++ K E+ I Y D + + I I+ +A +L Sbjct: 121 DKLDGRKKYVKEIERIGVLFHSATI--YDD---RIPEWIVRYCSEVGVKINAQAANMLAN 175 Query: 176 NLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 N+G D + E+ KL I+ + V+ + + E+ A + Sbjct: 176 NIGNDLLRIAGEIDKLKIAVNDGRTDTISPEIVERNVGISKEYNNFELTAALGKKDALTV 235 Query: 234 IMLADFFLASKMPSHALLHGFLQ----KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + D+F K P + ++ L F L H++K+ S E + Q+ N + Sbjct: 236 YRIVDYF--GKSPKNFVIQVTLAVVYNFFVNLLHYHLLKD---KSPESVSQRVGINRFFV 290 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + R++ +R + I ++ Sbjct: 291 --KDFAAAARLYPHAKIRRIIGYIRDTDAKSK 320 >gi|255691901|ref|ZP_05415576.1| DNA polymerase III, delta subunit [Bacteroides finegoldii DSM 17565] gi|260622454|gb|EEX45325.1| DNA polymerase III, delta subunit [Bacteroides finegoldii DSM 17565] Length = 339 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 116/325 (35%), Gaps = 15/325 (4%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I + + N+ F+L V+ + +++T N + Sbjct: 21 RPVYYLMGEESYYIDLIADYITNNVLNETEKEFNLTVVYGAD--ADVATVINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE + Sbjct: 79 SEHQVVVVKEAQVIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKVGV 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 + L I + + +A +L +G D EL+KL Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGVDMEPKATAMLADFVGSDLSRLTGELEKLIITLPAG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256 +T + ++ I + E+ +A ++ I A + +F + K + L Sbjct: 196 QRRVTPEQIERNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + + S + + ++ + ++R + + + +I + Sbjct: 256 NFYS--NLMLAYYAPDKSEQGVANMLGLKTTWQAKDYIA-AMRKYTGVKTMQIVGEIRYA 312 Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338 ++ K + +I+ + + I Sbjct: 313 DAKSKGVKNSSMTDGDILRELVFNI 337 >gi|169824484|ref|YP_001692095.1| putative DNA polymerase III subunit delta [Finegoldia magna ATCC 29328] gi|167831289|dbj|BAG08205.1| putative DNA polymerase III delta subunit [Finegoldia magna ATCC 29328] Length = 332 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ N LS+ + + +G +K I + ++ K++ + D + L + Sbjct: 6 AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55 Query: 70 FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121 ++ + +FS K++ILI +S K +D L I +III S + Sbjct: 56 IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI-----EESLLIGQKSISKEAKQILLAN 176 K+ L+ E I N+ I + L +I E L+ N Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 I NEL K + LE ITEQ + +I + + I ++ ++ Q + I Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 D + S LH ++ F+ L + + +S +I +K + I + N +Q Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISSYELNKIQN 286 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323 ++IW + +R +HK+ + Sbjct: 287 FVKIWRYDQLRFAIHKMYEIEITLKSN 313 >gi|325295699|ref|YP_004282213.1| DNA polymerase III delta [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066147|gb|ADY74154.1| DNA polymerase III delta [Desulfurobacterium thermolithotrophum DSM 11699] Length = 314 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 102/269 (37%), Gaps = 26/269 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++ +++ L + +G + L QF K +S ++ + Sbjct: 1 MKVVKVQDVLKQLKTG-KLPFKKVLIHGEEAYL----TEQFLKKVS-------EVIDIEK 48 Query: 61 LEIQKNISTFWNEINSTSLFSKK------KIILIENLSTEKKVLDCLEEIIIKNICNHII 114 + +NI +F+N + SLF K + + + +K + I ++ Sbjct: 49 FYVDENIDSFFNFTGT-SLFGKSPVPVVLNVERLNEVLRKKVDKERFLNTIKTFDEFILV 107 Query: 115 IIKSNEIKK-NNTLRKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 ++ + KK + L +KF + Y + + L+++ K I+ E ++ Sbjct: 108 SMEELDYKKLKSELFSAIQKFIDATVVSERYSE--KAIYSLLKKKFDSAGKKITPEVLKL 165 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 ++ +G D RNE KL Y +T + VK ++ + + + E+I ++G Sbjct: 166 IVETVGTDLRELRNETDKLILY---PDELTPESVKLLLFSSGKVNVFELIFPLLEGNRRK 222 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLL 261 + + L +++ + + + Sbjct: 223 FLEQVEILLNCGGEPLSIIGLLQTQLRQI 251 >gi|86606177|ref|YP_474940.1| DNA polymerase III subunit delta [Synechococcus sp. JA-3-3Ab] gi|86554719|gb|ABC99677.1| DNA polymerase III, delta subunit [Synechococcus sp. JA-3-3Ab] Length = 325 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 101/270 (37%), Gaps = 14/270 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++++G D + + ++Q ++ + F+ L N + L S Sbjct: 2 PVYLYWGDDTYRLMQAVHQLREQVLDPDWAAFNYDRLPPESTLAG----LNLAMTPPLGS 57 Query: 82 KKKIILIENLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135 +++ +E + + + LE + +++ + K + L+ K+ ++ Sbjct: 58 NARLVWLEETTLTQDCPEEWVRELERTLASLPPTTHLLLTTRN-KPDGRLKSTKLLKQVA 116 Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ ++ + +S EA Q L +G D EL+KL+ + Sbjct: 117 LAREFPQLAPWDEEGILRQVYSEARQRDLKLSPEAAQKLAEAVGNDSRRLAMELEKLALF 176 Query: 195 CLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + I+ + ++ ++ ++ + QG + A+ + L P+ +L Sbjct: 177 TVNQRDPISPEQIEALVP-ASAYNSFQLAASLRQGNLDQALRILAHLLDHNEPALKILAV 235 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + +F+ + ++ E + I QK E Sbjct: 236 LVGQFRTWLWVKLLLEEGERDPKVIAQKAE 265 >gi|59800732|ref|YP_207444.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA 1090] gi|240112390|ref|ZP_04726880.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11] gi|240122970|ref|ZP_04735926.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332] gi|240127676|ref|ZP_04740337.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035] gi|254493190|ref|ZP_05106361.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291] gi|268598450|ref|ZP_06132617.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11] gi|268681590|ref|ZP_06148452.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332] gi|268686060|ref|ZP_06152922.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035] gi|293399568|ref|ZP_06643721.1| DNA polymerase III, delta subunit [Neisseria gonorrhoeae F62] gi|59717627|gb|AAW89032.1| putative DNA polymerase [Neisseria gonorrhoeae FA 1090] gi|226512230|gb|EEH61575.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291] gi|268582581|gb|EEZ47257.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11] gi|268621874|gb|EEZ54274.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332] gi|268626344|gb|EEZ58744.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035] gi|291610137|gb|EFF39259.1| DNA polymerase III, delta subunit [Neisseria gonorrhoeae F62] Length = 332 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 87/260 (33%), Gaps = 19/260 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G ++ L E ++ + + +A + + + LF+ Sbjct: 16 PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGNAGLFA 72 Query: 82 KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K++ I N K + L++ + + + ++ +++K K Sbjct: 73 DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 P L I L I +A + + G+ +A+R E+ KL+ + Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245 + + + + ++ A ++G + L D +A + Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252 Query: 246 PSHALLHGFLQKFQLLEKIH 265 + L L++ Q ++ + Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272 >gi|262195554|ref|YP_003266763.1| DNA polymerase III subunit delta [Haliangium ochraceum DSM 14365] gi|262078901|gb|ACY14870.1| DNA polymerase III, delta subunit [Haliangium ochraceum DSM 14365] Length = 338 Score = 72.3 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/302 (10%), Positives = 104/302 (34%), Gaps = 13/302 (4%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + + + T V+I + L+ + + F+ V+ A Sbjct: 2 ADSLLDRVTAGKLS--PVYILHSEHPLLVDRAVAAIRDAAVPENARGFNYDVVEAKGASA 59 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKN 124 + + ++++++L+ +L+ L + + + +++ ++++ K Sbjct: 60 Q--RILAAAQTLPMMAERRMLLVRDLAAMSSAELAKMVPYLGSPNPSTVLVGVTSKLDKR 117 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 A+K ++ +S L + +EA + L+ +G D Sbjct: 118 VKFYAAAKKAKALHELS----APRDLTGWLASEAKERGIKAEREACRRLVDVVGSDMSRL 173 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L++LS + + I V +++ DT + E+ +A G +A+ + Sbjct: 174 ALALEQLSLFT-DGRRIAADDVDELVADTRERSVFELTDALGAGSRADALAAVASLCEQR 232 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + ++ + + L + +S + + + + ++ + ++ + Sbjct: 233 QSAIGVVVMVGRFMRQLALCR-VASAQRLSKGEAAKLVGAPPFVIDK--MKRQAQRYDDD 289 Query: 305 LV 306 + Sbjct: 290 GL 291 >gi|291451268|ref|ZP_06590658.1| DNA-binding protein [Streptomyces albus J1074] gi|291354217|gb|EFE81119.1| DNA-binding protein [Streptomyces albus J1074] Length = 335 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 14/292 (4%) Query: 59 NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113 + ++ + T E+ S SLF+++K++++ N + ++ + + + Sbjct: 50 DVRDLTSDQLQPGTLA-ELTSPSLFAERKVVVVRNAQDLSADSVKDVKAYLGAPVEEITL 108 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 +++ + K L + +A L + ++ + EA Q L Sbjct: 109 VLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRALGRTATPEASQTL 167 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + +G D + + +L+ + I E V + + ++G+ A Sbjct: 168 VDAIGSDLRELASAVTQLA--ADVEGNIDEAVVGRYYTGRAEASSFTVADRAVEGRTAEA 225 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + L++ + + Q + I + + ++ P K + Sbjct: 226 LEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 280 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 +++ +R W + V L + + + + + ++ IA A Sbjct: 281 VRQQMRGWTPDGVATALRAVALADAGVKGGGDDPEYALEKAVVAIATAARAR 332 >gi|148244300|ref|YP_001218994.1| DNA polymerase III delta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326127|dbj|BAF61270.1| DNA polymerase III delta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 339 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 128/324 (39%), Gaps = 17/324 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G++ LI + + Q KK D +++ + + + EI++TSLFS Sbjct: 19 IYFIFGAEILLIEQSLAQIKKAAKQKKFDEKVSFEIDSNF---DWNQIFEEISTTSLFSP 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KNNTLRKIAEKFTSV 137 K+II ++ K + L EI+ N ++I+ + ++ + + KI E+ S+ Sbjct: 76 KRIIECRLKTGKIGIKGANNLVEIVNTLPNNILLIVSTGKLNIAQQKSKWFKILEQTGSL 135 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I + HL+D I + + + E Q + G+ AS +QKL Sbjct: 136 --IQHFEVQNNHLVDWITKQMAELGLKDNIEIAQNIAFCTEGNLTASMQAIQKLKI-AYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + I Q + ++I+A + G + +++ + L H + Sbjct: 193 NGKINTQEYLKQANQQSKYTVYDLIDAALFGNSNQVNKIYQTLISNTIMPIQLSHALYLE 252 Query: 258 FQLLEKIHII-KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + ++ I ++ + + + + ++ I+ +L+ + ++ L + Sbjct: 253 IKSITEMSIELRQVKDTNIVLKNHQ----VWNTRKPIITNALKHHSYQHFQKILLSLGCI 308 Query: 317 IHLARKKKYLEK-NIIFQTILYIA 339 + L + + +L +A Sbjct: 309 DRSIKNMDNLNVIDELHTLLLSLA 332 >gi|145628144|ref|ZP_01783945.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21] gi|144979919|gb|EDJ89578.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21] Length = 344 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E N + + D + + +++ Q + S LF Sbjct: 19 RVYLLQGQDPLLLSETENSICQVANQQGFDEKNSIQVDS---QTDWVQLIESCQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V+ I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LH 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPIILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIMTTEKLPTQQIKAEFDRLKIWQNRRPLFLSAIQRLTYQKLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + L +++ Sbjct: 315 ELANIERLTKQE 326 >gi|89899570|ref|YP_522041.1| DNA polymerase III subunit delta [Rhodoferax ferrireducens T118] gi|89344307|gb|ABD68510.1| DNA polymerase III, delta subunit [Rhodoferax ferrireducens T118] Length = 354 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 107/288 (37%), Gaps = 20/288 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L+ E + + S + + S S SLF+ Sbjct: 19 LYTVYGDEPLLVQEAADAIRAFARTQGFTERSSHTVAGAHF--DWSEVLAAGGSLSLFAD 76 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICN----HIIIIKSNE-IKKNNTLRKIAEKFT 135 K+I+ I + K+ L+++ + N ++++ + + K + E F Sbjct: 77 KQIVELRIPSGKPGKEGGVALQQLAEQARGNESTLTLVMLPRLDKLGKGSAWFGALESFG 136 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISK-EA----KQILLANLGGDRIASRNELQK 190 LA+ P + L I + L + + ++ EA Q + G+ +A+ E+QK Sbjct: 137 ITLAVE--PVERNALPAWIAQRLAVQGQRVAAGEAGQHSLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ +T ++ + + + ++ +A + G++ + D A + + Sbjct: 195 LAL-LYPPGELTFDQIESAVLNVARYDVFKLSDAVLSGQVVRVQRMLDGLQAEGEAAVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + L+++ + + ++ + + + + L Sbjct: 254 HYTLAEDIRALKRVKDAMNRGSPLPMALREQR---VWGTRERLFERVL 298 >gi|218262045|ref|ZP_03476661.1| hypothetical protein PRABACTJOHN_02333 [Parabacteroides johnsonii DSM 18315] gi|218223626|gb|EEC96276.1| hypothetical protein PRABACTJOHN_02333 [Parabacteroides johnsonii DSM 18315] Length = 340 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 97/282 (34%), Gaps = 20/282 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G + + ++ + +N+ F+ +++ + + ++ N + S Sbjct: 22 PVYIMMGDEPFFMDQITDLLLENVLEESERDFNQIIMYGAD--ADAASIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 K +++++ + + + L + + + ++++ + + L +K Sbjct: 80 KYQLVVVREAQLIRDI-ELLSNYVKNPLMSTVLVVNYKYKNLDRRKALASATDKTGVLFE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPAFIASFMQLRSIGIDGKAAQMLSDFLGNDLSRLSKELDKLALILP 193 Query: 197 EDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + V+ I + E+I A + A +A +F + P L Sbjct: 194 EKGVKRITPELVEQNIGISKEYNNFELIKALAMKDVLKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 F L + + S ++ ++ L Sbjct: 254 VLFNYFSNLLICYY---TKDRSEAGLMAALGLRGTFQVKDYL 292 >gi|145638256|ref|ZP_01793866.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII] gi|145272585|gb|EDK12492.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII] gi|309751410|gb|ADO81394.1| DNA polymerase III subunit delta [Haemophilus influenzae R2866] Length = 344 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E N + + D + + +++ Q + S LF Sbjct: 19 RVYLLQGQDPLLLSETENSICQVANQQGFDEKNSIQVDS---QTDWVQLIESCQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V+ I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LH 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPIILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIMTTEKLPTQQIKAEFDRLKIWQNRRPLFLSAIQRLTYQKLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + L +++ Sbjct: 315 ELANIERLTKQE 326 >gi|221213178|ref|ZP_03586153.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD1] gi|221166630|gb|EED99101.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD1] Length = 364 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 114/296 (38%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKALAAADNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTAAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307 >gi|161525899|ref|YP_001580911.1| DNA polymerase III subunit delta [Burkholderia multivorans ATCC 17616] gi|189349382|ref|YP_001945010.1| DNA polymerase III subunit delta [Burkholderia multivorans ATCC 17616] gi|221202479|ref|ZP_03575510.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2M] gi|221208064|ref|ZP_03581069.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2] gi|160343328|gb|ABX16414.1| DNA polymerase III, delta subunit [Burkholderia multivorans ATCC 17616] gi|189333404|dbj|BAG42474.1| DNA polymerase III delta subunit [Burkholderia multivorans ATCC 17616] gi|221171967|gb|EEE04409.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2] gi|221177652|gb|EEE10068.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2M] Length = 364 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 114/296 (38%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + + ++++ + + +A Sbjct: 76 RQLIELRIPSGKPGKEGADALKALAAADNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L ++ ++ + L Sbjct: 255 VEELRTLLRIK-RGTAAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307 >gi|313888867|ref|ZP_07822527.1| DNA polymerase III, delta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845040|gb|EFR32441.1| DNA polymerase III, delta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 336 Score = 71.9 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 124/327 (37%), Gaps = 25/327 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++F+G +K L+ + F+ E++ + + + + Sbjct: 15 AYLFFGPEKYLMENAVGYLINKYVKGTE-AFNYTKFKGSEVK--PEDLISACETYPVMND 71 Query: 83 KKIILIENLS---TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSV 137 KK++L+ ++ E + D E + N+ + +I+I + IKK K +K Sbjct: 72 KKVVLVRDVVDFLGENDLKDSFYEFL-DNLSDFVILIFWDTANIKKTTKFYKAFKKKDRD 130 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD-------RIASRNELQK 190 + + N + L + I+ + K IS+ + + G + + E+ K Sbjct: 131 MDFA--KLNPVDLNNFIKGYFIRKGKEISQSEVSLFIGESGYNSKNEDVSLFDLKTEMDK 188 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++S+ ++ I+ + + I + I + ++A + K ++ PS + Sbjct: 189 IASHA-KNKKISREDISSTITENIDTNIFKFLDAMMGRKREESLKELHNLYKLGEPSLRI 247 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309 +++ + L I+ NIS I+ K E KN K + + E Sbjct: 248 FTMIIRQVKNLLSYKILS-TKNISQNDIMNKMEVKNFELKKIRGFERNFSKEFLIDFYEE 306 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTIL 336 L K D K +++ +I +T++ Sbjct: 307 LIKTDELF----KTSSIDEKLIMETLI 329 >gi|319775145|ref|YP_004137633.1| DNA polymerase III subunit delta [Haemophilus influenzae F3047] gi|329122937|ref|ZP_08251508.1| DNA-directed DNA polymerase III delta subunit [Haemophilus aegyptius ATCC 11116] gi|317449736|emb|CBY85943.1| DNA polymerase III, delta subunit [Haemophilus influenzae F3047] gi|327471868|gb|EGF17308.1| DNA-directed DNA polymerase III delta subunit [Haemophilus aegyptius ATCC 11116] Length = 344 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEKFTS 136 K+I+ + +L L+E+I + ++I++ + I+K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKFAKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 AILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + L +++ Sbjct: 315 ELANIERLTKQE 326 >gi|302534355|ref|ZP_07286697.1| LOW QUALITY PROTEIN: DNA polymerase III, delta subunit [Streptomyces sp. C] gi|302443250|gb|EFL15066.1| LOW QUALITY PROTEIN: DNA polymerase III, delta subunit [Streptomyces sp. C] Length = 346 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 10/257 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLFS++K++++ N + L+ I + ++++ + +K Sbjct: 56 PGTLA-ELTSPSLFSERKVLVVRNAQDLGADTVKELKAYIAEPYEEITLVLLHAGGVKGK 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 115 GVLDAARKAGAREVACPKMTKAADRLSF-VRGEFRTLGRSATPEACQTLVDAIGSDLREL 173 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + +L + I E V + + ++G+ A+ + LA+ Sbjct: 174 ASAAAQLC--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATG 231 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + + P K + +++ +R W+ + Sbjct: 232 VAPVLITSALAQAVRAIGKL--ASAPRGARPGDLARDLGMP--PWKIDRVRQQMRGWSAD 287 Query: 305 LVRETLHKIDHRIHLAR 321 V + L + L+R Sbjct: 288 GVADALRAVALADALSR 304 >gi|269139985|ref|YP_003296686.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202] gi|267985646|gb|ACY85475.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202] gi|304559818|gb|ADM42482.1| DNA polymerase III delta subunit [Edwardsiella tarda FL6-60] Length = 344 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 44/321 (13%), Positives = 118/321 (36%), Gaps = 20/321 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ I + + L +F+ G++ LI E ++ ++ D V L+ Sbjct: 1 MSRIYPEQLGAQLQDGLRACYFIL---GNEPLLIQESLDLIRQRARAHGFDEQFSVTLDP 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + +++ S SLF+ ++I+ + + + + L ++ + +++++ Sbjct: 58 HT---DWDALFSQSQSMSLFASRQILTLTLPDNGVNAAMGERLSQLAALLHPDLLLLLRG 114 Query: 119 NEIKK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + + N K+ +SC + L + Q + + A Q+L Sbjct: 115 PRLTRTQENAAWYKLL--SPQATLVSCQTPEQTQLPRWVANRARQMQLQLDEAALQLLCY 172 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 G+ +A L +LS D +T V+ + D ++A + + A Sbjct: 173 CYEGNLLALSQALGRLSL-LYPDGRLTLPRVEQAVNDAAHFSPFHWLDAMLAARGKRAWH 231 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNIL 294 + + L+ + E + +++ S + + +K+ + +R +L Sbjct: 232 ILNQLRQEGCEPVVLVRTVQR-----ELLLLLQLKSGATQTPLRTLFDKHKVWQNRRPLL 286 Query: 295 QESLRIWNKNLVRETLHKIDH 315 ++L+ + + + + + Sbjct: 287 TQALQTLSLTQLHQAVALLSQ 307 >gi|297199607|ref|ZP_06917004.1| DNA polymerase III, delta subunit [Streptomyces sviceus ATCC 29083] gi|197713465|gb|EDY57499.1| DNA polymerase III, delta subunit [Streptomyces sviceus ATCC 29083] Length = 337 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 108/309 (34%), Gaps = 14/309 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + K T + L V + G ++ L+ + Q + + L + ++Q T Sbjct: 9 MAKKTAHDDLLAPVTLAVGQEE-LLLDRAVQEVVAAARAADADTDVRDLTSDQLQ--PGT 65 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + ++++ + K L Sbjct: 66 LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGAAKGKALL 124 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + +A L + + +S + EA Q L+ +G D + Sbjct: 125 DAARKAGAREVACPKMTKPADRLAF-VRQEFRATGRSATPEACQALVDAIGSDLRELASA 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L + I E V + + ++G+ A+ + LA+ + Sbjct: 184 VSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 241 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + Q + I + + ++ P K + +++ +R W + V Sbjct: 242 VMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 296 Query: 308 ETLHKIDHR 316 + L + Sbjct: 297 DALRAVAEA 305 >gi|152978424|ref|YP_001344053.1| DNA polymerase III subunit delta [Actinobacillus succinogenes 130Z] gi|150840147|gb|ABR74118.1| DNA polymerase III, delta subunit [Actinobacillus succinogenes 130Z] Length = 349 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 91/253 (35%), Gaps = 21/253 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G D L+ E + K + D V ++ + S LF Sbjct: 22 LYYLVGQDPLLLTESRDLIIKTATAQGFDERREVTVDNAT---DWIDLQERCQSRGLFFN 78 Query: 83 KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT------ 135 K+II + +L L E + + ++I++ + K+ EK Sbjct: 79 KQIISLILPENLTALLQKNLAEFMAVLNEDVLLIVQF------VRISKLFEKSEWHKRAL 132 Query: 136 ----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 S++ ++C L + ++ ++A Q+L + + +A + L+ L Sbjct: 133 NYETSIVQVNCQTPTAEQLPRWAANRVKAMGLTVGQDALQLLCYSYENNLLAMKQALELL 192 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + D +T + V+ + + + I+A + GK A + + A + LL Sbjct: 193 AL-LHSDKKLTFERVQKVAEQSSTFTAFQWIDAVLAGKEARARRILNGLRAEDVQPVVLL 251 Query: 252 HGFLQKFQLLEKI 264 ++ L ++ Sbjct: 252 RTLQRELMTLLEL 264 >gi|258647117|ref|ZP_05734586.1| DNA polymerase III, delta subunit [Prevotella tannerae ATCC 51259] gi|260853072|gb|EEX72941.1| DNA polymerase III, delta subunit [Prevotella tannerae ATCC 51259] Length = 344 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 106/328 (32%), Gaps = 30/328 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I L + F+L+ L ++ I + + + Sbjct: 27 PVYFLMGEESYYIDRLADLLVLKALRPEERDFNLITLYGADVV--IDNVLDAAKGFPMGA 84 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNT----LRK---IAE 132 + ++L++ K + LE + + + I++ K+ I + L K + E Sbjct: 85 PRLVVLVKEAQNIKDY-ERLEYYLKQPQASTILVFCYKNGTIDRRKKGIALLGKVGVLFE 143 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 Y L I L Q+ I A Q+L+ +G D EL KL Sbjct: 144 SKRL------Y---DSQLPSFINAYLASKQRKIEPAALQLLIEYVGADLNRMAAELDKLC 194 Query: 193 SYCLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249 I+ V II + + E+ +A Q + A + +F + + P Sbjct: 195 LSSPSTALSISVASVAAIIGVSKEYNLYELQDALAQKDVLKAYKIEKYFDGNPKEFPIQR 254 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L + F L + + + + ++ R ++R + V Sbjct: 255 TLPTLFRFFSNLMLAYYSMDKTESGIASWVGVSD----WQFRKTYAVAMRNYRAEKVMRI 310 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337 + +I AR K I ++ Sbjct: 311 VAEIRRT--DARSKGVGSTTISSGELMK 336 >gi|169834635|ref|YP_001693256.1| DNA polymerase III delta subunit superfamily protein [Clostridium botulinum B1 str. Okra] gi|169123183|gb|ACA47018.1| DNA polymerase III, delta subunit superfamily [Clostridium botulinum B1 str. Okra] Length = 327 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 91/247 (36%), Gaps = 20/247 (8%) Query: 33 LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 LI + + F K + + ++ ++ I++ + F IN+ K++IL+ Sbjct: 17 LITDNVTAFNKTKKLLCSQIINPKLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75 Query: 89 EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139 E + K ++ L + + + + S I KN+ ++K + ++ Sbjct: 76 ELPLFKTGVAKKINGLLKALKSIPDETSVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + +I+ EA + + + + E++KL CL Sbjct: 136 GEFQSD---YVKKVCNSIFARHNTAITNEALDLFVNKT-LNMDIALQEIKKLL--CLNKN 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + + + I + I ++ ++ + + L ++ + L + Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249 Query: 260 LLEKIHI 266 +L++ + Sbjct: 250 MLQEARL 256 >gi|110004108|emb|CAK98447.1| conserved hypothetical protein [Spiroplasma citri] Length = 321 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 121/308 (39%), Gaps = 32/308 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F+ YG D LI + + K I + + L N LE S + N+ +FS+ Sbjct: 1 MFLIYGEDAFLIK--MKKNKILKKINPDNEYDLQEYNYLE-DSLPSILND-ANTIPMFSE 56 Query: 83 KKIILIEN-----------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--- 128 K++I++ + K L L E + + II K +N L+ Sbjct: 57 KRVIIVNDSYFLTEEKIKAKIDNKNHLTSLMEYLAAPNPSTFIIFICPVNKLSNRLKITK 116 Query: 129 KIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 ++ + + AI+ Y + L+ I++ + +I++ ++ L + +NE Sbjct: 117 QMLALTSVLKAINLSYNE----LIKFIDDYITKNNGTINQNLIPKIVEYLPNNLYIIKNE 172 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+KL + IT + + + I ++++ ++ + + ++ + + S Sbjct: 173 LEKLLLI---NSKITMDLIANNMTKYLDTDIFKLVDDLLKNDLNSFLINYHYLQERGLNS 229 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 ALL + + + I+ + +I + + I P + + E + ++ + Sbjct: 230 IALL-ALITNSVIFTRDIIVLSVLKKTPSQIAEILQ--IHPFRVKKISEHMHNFS---IN 283 Query: 308 ETLHKIDH 315 + + I Sbjct: 284 KANNIIQE 291 >gi|296140495|ref|YP_003647738.1| DNA polymerase III subunit delta [Tsukamurella paurometabola DSM 20162] gi|296028629|gb|ADG79399.1| DNA polymerase III delta [Tsukamurella paurometabola DSM 20162] Length = 301 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 95/268 (35%), Gaps = 10/268 (3%) Query: 55 LVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHI 113 + L A ++ ++ E+ S SLF++++I+++E+ + K +D + E Sbjct: 21 VTRLRAGDVDQSE---LAELLSPSLFAEERIVVLESAAEAGKAPVDLIVEAAQNPPDGIT 77 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 ++I+ + + ++ +K + + N MD + + +S E ++L Sbjct: 78 LVIEHSGGGRAKSMVAALKKAGATMVEVPAISNARDRMDFAKSEFRAQKVRVSDELVELL 137 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + ++G D + +L + V + EI + + G++ A Sbjct: 138 VDSVGKDLRELAAAIAQLV--ADTGGRVDLAAVNRYYAGRAEVTGFEIADKAVAGQVSAA 195 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + P + + +I + ++ E + P K Sbjct: 196 MEALRWAQHRGTPHVLIADALADAVHSVARIR----GLGRTPDQYRDAGELGMAPWKVKK 251 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLAR 321 + + R W V + L + + + Sbjct: 252 MTQVARRWRAENVAQALDAVANANADVK 279 >gi|212712944|ref|ZP_03321072.1| hypothetical protein PROVALCAL_04042 [Providencia alcalifaciens DSM 30120] gi|212684422|gb|EEB43950.1| hypothetical protein PROVALCAL_04042 [Providencia alcalifaciens DSM 30120] Length = 344 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 115/311 (36%), Gaps = 29/311 (9%) Query: 24 FIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +GS+ LI E I + H F+L E + ++ + SLF Sbjct: 21 YLIWGSEPLLIQESQDAIRLAARQQGFEEHFTFAL------EQNTDWDEIFSLCQALSLF 74 Query: 81 SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + ++++ + + D L ++ + + + + + L K E Sbjct: 75 ASRQMLTLFLPENGPNAAMADKLAQLASLLHPDLL------LVLRGHKLTKAQENSAWFK 128 Query: 139 AIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 AIS C L + + + ++ EA Q+L G+ + L++L Sbjct: 129 AISQDSVYVSCLTPEYQRLPQWVSKRASQMRLALETEANQLLCYCYEGNLLGLAQALERL 188 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S D +T V+ + D+ ++A + GK + + + + LL Sbjct: 189 SL-LYPDGKLTYPRVESAVNDSAHFTPYHWVDAILAGKPRRSWHILEQLKQEDVEPVILL 247 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++ LL + ++ ++ + + + + + +R +L E+L+ + + ++ L Sbjct: 248 RAIQRELMLLITLK--RQSTSTPLKTLFDQHK--VWQNRRGLLGEALQRLSLHQLQSALM 303 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 304 LLTQAEIHTKQ 314 >gi|152980551|ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinobacterium sp. Marseille] gi|151280628|gb|ABR89038.1| DNA polymerase III delta subunit [Janthinobacterium sp. Marseille] Length = 338 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 115/329 (34%), Gaps = 21/329 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ + L E ++ +K + ++V++ S SLF Sbjct: 19 LYVITSDEHLLALEAADKIRKAARAQAYSEREVLVVDRSF---KWGELLAANQSQSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 KK+I I K L++ +++ +I ++ Sbjct: 76 KKLIELRIPTGKPGKDGGKALQDYAASLSPDNVTLITLPKLDWATQKAAWVTSLQQASV- 134 Query: 141 SCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 Y D + L + L ++S ++E + + G+ +A+ E+QKL+ Sbjct: 135 --YIDIPLIERAQLPAWLGVRLAAQRQSANRECLDFIADRVEGNLLAAHQEIQKLAL-LY 191 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + ++ + + D + + + ++ A + G + + + +L + Sbjct: 192 PEGPLSFEQIHDAVLNVARYDVFKLNEAMLSGDTTRLVRMLEGLKGEGEALPLVLWAVAE 251 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KI 313 + + L K+ ++ ++ I + +++ +LR + + L +I Sbjct: 252 EVRTLLKLKAGV-AQGRPLSQLTKEYR--IWGPRERLVEPALRRLKLATLEDALQEAAQI 308 Query: 314 DHRIHLARKKKYLEKN--IIFQTILYIAQ 340 D + R K++ + Q L IA+ Sbjct: 309 DKMVKGLRAKQFSGDAWDAMLQLGLKIAR 337 >gi|317133022|ref|YP_004092336.1| DNA polymerase III, delta subunit [Ethanoligenens harbinense YUAN-3] gi|315471001|gb|ADU27605.1| DNA polymerase III, delta subunit [Ethanoligenens harbinense YUAN-3] Length = 345 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 110/331 (33%), Gaps = 12/331 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG + L + + F+L +A ++S + L + Sbjct: 17 RLYLLYGEEGYLAAHYARALSERAIPSVR-EFNLHRFSADTF--DLSKLSAAVEHLPLMA 73 Query: 82 KKKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFT 135 ++ ++++++ + K ++ + ++++ + KK+ + + E Sbjct: 74 ERTCVVLQDIDPDTLKAKEWKEFLALLADAPASCVLVLAFTHVSYDKKSAHWKALIELAK 133 Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 S +A K L + + SIS A L G D E++KL++Y Sbjct: 134 KSGVAEQFAVPTKRELEKWLAKRARGAGASISAAAADALAEACGADMNRMAAEMEKLAAY 193 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 I + V ++ I ++ A + G++ A+ K +L Sbjct: 194 AAG-GEIGREAVDALVHKNIECSIYDLARAVLAGRLPAALETLGGLFDRKEEPVVILSAL 252 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 Q F L + + + + RN L R ++ +R L ++ Sbjct: 253 SQAFCDLYRAAVAVSAGKGQADLAADFPYRGREFRIRNAL-RDCRGLSEGYLRAALDRLL 311 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 H + + + + + + + Sbjct: 312 AADHQLKSSGADSRLALERLCVDLTHLRKRG 342 >gi|160901432|ref|YP_001567014.1| DNA polymerase III subunit delta [Delftia acidovorans SPH-1] gi|160367016|gb|ABX38629.1| DNA polymerase III, delta subunit [Delftia acidovorans SPH-1] Length = 350 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 93/301 (30%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++ +G + E + + + S + + S S SLF Sbjct: 17 RPLYVLHGDEPLQQQEAADAIRAAARAAGYTERSSYTVAGAHF--DWSAVLAAGGSLSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + ++I+ I + K L++I N + ++ + K Sbjct: 75 ADRQIVEIRIPSGKPGKDGGAALQQIAESARGNDSTLTLVLLPRLDKATKTGAWFSALEA 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190 + + P + L I + L + ++ Q + G+ +A+ E+QK Sbjct: 135 QGMTLQIDPIERAQLPAWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ + +++ V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPEGELSQAQVEQAVLNVARYDVFKLSEAVLGGQLARVSRMLDGLQAEGTAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + + ++ + + + K + + L L Sbjct: 254 HWTLAEDIRAICRVRDAMAAGQPLPMALRAQRIWGV---KERLFERLLPRITDAQAARLL 310 Query: 311 H 311 Sbjct: 311 Q 311 >gi|21674760|ref|NP_662825.1| hypothetical protein CT1948 [Chlorobium tepidum TLS] gi|21647973|gb|AAM73167.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 346 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 22/225 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ F G + L E+ Q K I + ++ + +VL ++ + + + +F Sbjct: 15 PVYFFQGPESWLKEEIETQLKAAIFPSENEAALNTLVLYGPDLT--LGQIVSAASEYPMF 72 Query: 81 SKKKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++KK++++ KKV D L + ++++ ++EI+K Sbjct: 73 TEKKLVVVRQFDKLKKVTDKTESQRQEKSLLSYLSDPPSFTVLVLDADEIEKTE-----L 127 Query: 132 EKFTSVLAISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 EK + D I E EA + + E++ Sbjct: 128 EKAPYKHLKAFRHDFGAIKNAEIFAAERAREAGWEFEPEALKTFSGYIEPSSRLICQEIE 187 Query: 190 KLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 KL+ Y + IT V D + + + E+ A + + Sbjct: 188 KLTLYASNKRPERRITLDDVCDCVGISRKYNVFELEKALVSKNLR 232 >gi|329934622|ref|ZP_08284663.1| DNA polymerase III, delta subunit [Streptomyces griseoaurantiacus M045] gi|329305444|gb|EGG49300.1| DNA polymerase III, delta subunit [Streptomyces griseoaurantiacus M045] Length = 334 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 83/252 (32%), Gaps = 10/252 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 T E+ S SLF+++K++++ N + + +++ K Sbjct: 59 PGTLA-ELTSPSLFAERKVVVVRNAQDLPADTVKEFKAYFASPAEEITLVLAHAGGAKGK 117 Query: 126 TLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L A K ++C + + +S + EA Q L+ +G D Sbjct: 118 GLLDAARKSGLAREVACPKMTKPADRLAFVRGEFRTQGRSATPEACQALVDAIGSDLREL 177 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L + I E V + + ++G+ A+ + L++ Sbjct: 178 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 235 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + + + K + +++ +R W + Sbjct: 236 VAPVLITSALAQGVRGIGKL--LGNRGGRPADLARELGMPP---WKIDRVRQQMRGWTPD 290 Query: 305 LVRETLHKIDHR 316 V + + Sbjct: 291 GVATAMRAVAEA 302 >gi|161507343|ref|YP_001577297.1| putative DNA polymerase III, delta subunit [Lactobacillus helveticus DPC 4571] gi|260101775|ref|ZP_05752012.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus helveticus DSM 20075] gi|160348332|gb|ABX27006.1| putative DNA polymerase III, delta subunit [Lactobacillus helveticus DPC 4571] gi|260084419|gb|EEW68539.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus helveticus DSM 20075] gi|323466774|gb|ADX70461.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus helveticus H10] gi|328468544|gb|EGF39546.1| DNA polymerase III, delta subunit [Lactobacillus helveticus MTCC 5463] Length = 328 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 128/315 (40%), Gaps = 37/315 (11%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 KN ++ + +G D L L N + K D F + +++ + ++ Sbjct: 8 KNTNNNNPHTLIWGGDDFLNDYLANSYIK------EDQFKDLEHVSVDCENDVLDELIAS 61 Query: 74 INSTSLFSKKKIILIENL--------STEKKVLDCLEEII--IKNICNHIIIIKSNE-IK 122 + +SLFS+ K+IL++N KK +D L++I + + + ++I+ S + + Sbjct: 62 LTESSLFSENKLILVKNPFFLTEKVPKKLKKQIDDLQKIFDNLNELEDVVVIVASYDKLD 121 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG- 179 + L K K +V+ I Y + +++ + +I++ A Q+L+ Sbjct: 122 RRKKLTKTVLKQFNVVEPTIRSYE-----VGAVVKSLIKTEGYTITQSALQLLIERSDQV 176 Query: 180 -DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D I S QKL D ITE+ V + + I I+ A + AI D Sbjct: 177 IDTILSN--YQKLKM-AANDNKITEKSVIQNVDLSLAQNIFAILEAALNKNYQEAIERLD 233 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 L LL F + +L+ + I+ + S +I+++ + P + + +L Sbjct: 234 NQLREGTNPIQLLAVFENQLELILVVKILAQRGR-SEVQIVKELG--VHPYRVKL---AL 287 Query: 299 RI-WNKNLVRETLHK 312 R + + L K Sbjct: 288 RNKLTVPELEQLLQK 302 >gi|262371102|ref|ZP_06064424.1| DNA polymerase III subunit delta [Acinetobacter johnsonii SH046] gi|262313988|gb|EEY95033.1| DNA polymerase III subunit delta [Acinetobacter johnsonii SH046] Length = 329 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 93/201 (46%), Gaps = 11/201 (5%) Query: 70 FWNEINSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124 +N +NS SLFS + I + N+ + L L+ I N N ++++ S +K Sbjct: 61 VFNALNSLSLFSSQLAIEVHGNIKPDANALKLLKSYIQSNEQNLLLVVMPKQDSASLK-- 118 Query: 125 NTLRKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + E +A+ + YP ++ ++ + + L +S++A Q L + + +A Sbjct: 119 TGFFQTVEANGVHVALTANYPRDRQQILSIEADKL---GVKLSQDAWQWLEQHHEHNLLA 175 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 ++N L ++S E LI H+ + D ++ +A ++G + +I + + +AS Sbjct: 176 AKNSLMRVSDTFAEVELIQIDHLHACLQDQSRYSTFDLSDALLEGNLAQSIKIYQYLIAS 235 Query: 244 KMPSHALLHGFLQKFQLLEKI 264 P +L ++ +LL ++ Sbjct: 236 GEPLSLILWSISKEMRLLMQL 256 >gi|262381735|ref|ZP_06074873.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_33B] gi|262296912|gb|EEY84842.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_33B] Length = 340 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G + I ++ + K++ F+ ++L + + + N + S Sbjct: 22 PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 + ++I++ + + + L + + + I++I + + L +K Sbjct: 80 EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALSVATDKNGILYE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193 Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + ++ I + E+I A I A +A +F + P L Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECS 271 F L + K+ S Sbjct: 254 VLFNYFSNLLICYYSKDRS 272 >gi|85860499|ref|YP_462701.1| DNA polymerase III subunit delta [Syntrophus aciditrophicus SB] gi|85723590|gb|ABC78533.1| DNA polymerase III, delta subunit [Syntrophus aciditrophicus SB] Length = 460 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 4/194 (2%) Query: 88 IENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146 ++ S D LE I+ +++++ + + K L K + VL Sbjct: 179 LKGRSATGGGTDHLEAILRDGLPAGNVLLLTAESVDKRKKLFKTISELGRVLPFVVEKGE 238 Query: 147 KI---HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 LMD + L K +S A ++L G S L+KL +Y E I Sbjct: 239 ARQKNTLMDSARDLLATRGKRMSSGAWEVLGRKTGFQLRNSMAALEKLITYTGERKTIEV 298 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+++I T + ++ A + + A+ + + S +L +++ +LL Sbjct: 299 SDVEEVISRTREDKVFDLTAALAEKNLKGALSVLRSLREQGIHSLVILSMIVREMRLLLH 358 Query: 264 IHIIKECSNISFEK 277 ++ + + Sbjct: 359 ARQLRNEGALPGYQ 372 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 5/86 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG + I + + + +L VL+ + ++ + + L Sbjct: 26 PCYLLYGDAEYEISDAFTKIIDALLSPEDQALNLFVLDGED--EDPERIGENLMTPPLLP 83 Query: 82 KKKIILIENL---STEKKVLDCLEEI 104 +K++ + S+ K + D ++ I Sbjct: 84 GRKVVAVRRTQLFSSRKTLKDLVKRI 109 >gi|307330495|ref|ZP_07609637.1| DNA polymerase III, delta subunit [Streptomyces violaceusniger Tu 4113] gi|306883830|gb|EFN14874.1| DNA polymerase III, delta subunit [Streptomyces violaceusniger Tu 4113] Length = 331 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 97/282 (34%), Gaps = 10/282 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ N + ++ + ++++ + K Sbjct: 55 PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKGYLGAPAEEITLVLLHAGAAKGK 113 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRATGRSATPEACQALVDAIGSDLREL 172 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L + I E V + + ++G+ A+ + +++ Sbjct: 173 ASAVSQLV--ADVEGTIDEAIVARYYTGRAEASSFTVADRAVEGRAAEALEALRWAVSTG 230 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 +P + Q + + K+ N + ++ P K + +++ +R W+ + Sbjct: 231 VPPVLITSALAQGVRAIGKL--ASAPRNARPGDLARELGMP--PWKIDRVRQQMRGWSAD 286 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 V L + + + + ++ I + A Sbjct: 287 GVAVALRAVAEADAGVKGGGDDPAYALEKAVVTIVRAARAGR 328 >gi|61657453|emb|CAI44365.1| hypothetical protein [Thermotoga sp. SG1] Length = 329 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 28/258 (10%) Query: 65 KNISTFW---NEINSTSLFSKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKS-N 119 + + IN+ ++FS K ++ I + + + E+I + I ++S Sbjct: 40 DDPDKLNFLRSIINTRTIFSGKTVVDIIDFDSWRSQEQKRFLELIKSVPEDVHIFVRSQK 99 Query: 120 EIKKNNTLR--KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 K L K E + + IE+ +I+K+A Q+ + + Sbjct: 100 STTKGVNLDLPKPWETDRWL--------------EWIEKRFRENGLNITKDALQLFFSKV 145 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G + + E++KL +Y E I+ + V++++ +E A +GK A L Sbjct: 146 GTNDLLVEREIEKLKAYS-ETGNISAEDVEEVVFTYQTPGYDEFCFAVSEGKRKLAHALL 204 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNI 293 S + + F L K+ ++ +I ++ + P Sbjct: 205 SQMWKS-TEPVVISAVLVNHFLDLFKLVVLVTRKRYYTWPDVSRISKELGMPV-PRAARF 262 Query: 294 LQESLRIWNKNLVRETLH 311 L + + W ++ L+ Sbjct: 263 LGFAFKAWKFKVINHLLY 280 >gi|299144177|ref|ZP_07037257.1| DNA polymerase III, delta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518662|gb|EFI42401.1| DNA polymerase III, delta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 337 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 92/267 (34%), Gaps = 16/267 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 F+FYG ++ L+ I KK + F+L + + + ++ + + + + Sbjct: 18 AFLFYGYERLLMDNAIEYVKKKYVSRGMETFNLSLYDGNNLTED--KLMSSCETLPVMND 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVLA 139 K++I ++ + + + + NI +I++ + N+I K T K K + Sbjct: 76 KRVIFVKGANAFSESVTKEFYKFLDNIGEFLILVFLDEDNKIDKTKTFYKYFSKNNRAIE 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA-------SRNELQKLS 192 + + + IE L+ ISK L G D +NEL K Sbjct: 136 FP--KLSGKDIFNFIEGYLVRKGFDISKSDISYLSLKSGYDSKNLDMTLYDLKNELDK-M 192 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 E I + + + I ++A ++M P + Sbjct: 193 LVLSEVKKIDREVIDRSMTQNADSNIFNFLDALCNKNTEKSLMEFKKLHLLNEPIERIFS 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII 279 +++ L ++ + + + + Sbjct: 253 MIVRQV-RLLIMYGDLKSNGYKDVQAM 278 >gi|56460057|ref|YP_155338.1| DNA polymerase III, delta subunit [Idiomarina loihiensis L2TR] gi|56179067|gb|AAV81789.1| DNA polymerase III, delta subunit [Idiomarina loihiensis L2TR] Length = 360 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 109/307 (35%), Gaps = 20/307 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +G D L + + +K+++ D + L + + + S SLF Sbjct: 20 PVLLVFGDDLLLRNDALASIRKSLASD--DLERVHWLQSKDF--DWQQLSAGEQSMSLFG 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKFT 135 +++ +E + L E + I+++ + +KK + +AE+ Sbjct: 76 NMRLVELELPENKPGRDGSAALTEYAKNQADSEILVVIGDRLKKETQNSRWFKALAERGP 135 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 V S PD L I + Q ++ + L G+ +A EL K Sbjct: 136 LVRTQS--PDKSQ-LPAFIHQRAQRYQLILAAGVPEKLSDWFEGNLLALDQELSKWQLLS 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D +ITE +K I D + + + Q A+ + L + H L+ Sbjct: 193 -NDGVITEDFLKSSIDDVSRFSVFALQESIQQQDFEGALHRLERLLDEENDFHRLIWILQ 251 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHK 312 ++ QLL + K+ + + I P ++ + L ++ + + Sbjct: 252 REVQLLTALQKAKQTQTDTNALF---RQFMIWPNQQPGYHQRANQLSQQTLLSAQQLIER 308 Query: 313 IDHRIHL 319 I+ + L Sbjct: 309 IEAALKL 315 >gi|301169641|emb|CBW29242.1| DNA polymerase III, delta subunit [Haemophilus influenzae 10810] Length = 344 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 116/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + ++ + + + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIHRLTYQTLYKIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + L +++ Sbjct: 315 ELANIERLTKQE 326 >gi|288819134|ref|YP_003433482.1| DNA polymerase III delta subunit [Hydrogenobacter thermophilus TK-6] gi|288788534|dbj|BAI70281.1| DNA polymerase III delta subunit [Hydrogenobacter thermophilus TK-6] gi|308752718|gb|ADO46201.1| DNA polymerase III, delta subunit [Hydrogenobacter thermophilus TK-6] Length = 329 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 16/278 (5%) Query: 43 KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDC- 100 K + + +L E+ + + + S KK+ +I+N K V D Sbjct: 30 KAFIDKLSSLYHVKILWGDEL--DRKSLLSITESEMFIKKKRAFVIKNAEELFKGVKDGK 87 Query: 101 -LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD----NKIHLMDLIE 155 + K + + + S ++ K L K E ++L+I + +K + +L++ Sbjct: 88 YFTSLAKKLNNSSVFFVISEKLSKQ-QLEK--EPLKTLLSIGDLLEAKSPDKRKIRELVK 144 Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 + K I A LL + + +NE+ KL Y D IT + VK I Sbjct: 145 NRFVKEGKQIDDSALDYLLEITSYNLMELKNEVDKLILYA--DERITLEDVKAICISNIE 202 Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 + + INA + ++ + +P+ + + L + E + Sbjct: 203 YTVFDFINAFYTKDLEKSLNSLSSLVRWGVPALQIQAVLVNYALKLFVCAYLVE-NGYDI 261 Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 +K + P ++ + L + ++ +H++ Sbjct: 262 DKAFSELGIT-NPYLKHSFKTYLEKFKLKDLKNLIHRL 298 >gi|229587369|ref|YP_002860407.1| DNA polymerase III, delta subunit superfamily [Clostridium botulinum Ba4 str. 657] gi|229260352|gb|ACQ51389.1| DNA polymerase III, delta subunit superfamily [Clostridium botulinum Ba4 str. 657] Length = 327 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 20/247 (8%) Query: 33 LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 LI + + F K + + ++ ++ I++ + F IN+ K++IL+ Sbjct: 17 LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75 Query: 89 EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139 E + K ++ L + + + + S I KN+ ++K + ++ Sbjct: 76 ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + +I+ EA + + IA E++KL CL Sbjct: 136 GEFQSD---YVKRVCNSIFARHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + + + I + I ++ ++ + + L ++ + L + Sbjct: 190 TLNIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249 Query: 260 LLEKIHI 266 +L++ + Sbjct: 250 MLQEARL 256 >gi|332662293|ref|YP_004445081.1| DNA polymerase III subunit delta [Haliscomenobacter hydrossis DSM 1100] gi|332331107|gb|AEE48208.1| DNA polymerase III, delta subunit [Haliscomenobacter hydrossis DSM 1100] Length = 335 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 126/326 (38%), Gaps = 18/326 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + I + + + + F+ ++ ++ + + + + Sbjct: 17 PLYFLHGDEAYFIDVISDYIENEVLNEGERAFNQTIVYGKDV--DHLAIVDTARRYPMMA 74 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++++++ K + D L+ + K + + I++I K+ + N+ K + + Sbjct: 75 QHQVLILKEAQDMKTLKD-LQTYVEKPLDSTILVICHKNGKYNLNSKFGKAI--QANGVV 131 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + I++ L + SI EA ++ LG + NEL K++ Sbjct: 132 FESKRLYENQIPNWIQDYLRNKKLSIRPEASALVAEYLGTELSRVANELDKMAINLAPGT 191 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257 IT +H+++ I + + E+ A Q + A +A++F A+ + P ++ Sbjct: 192 EITTKHIEEQIGISKDYNVFELQKALGQRDVLKANRIANYFAANPKRNPITVIISSLYGF 251 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 F + ++ + S + ++ +E+ R +N++ + + Sbjct: 252 FSKVYLLNFFLQASEKEQLEALE-LRSAFFLKD---YREATRYFNRSRAERAIALLREYD 307 Query: 318 HLAR-----KKKYLEKNIIFQTILYI 338 ++ E +++ + I + Sbjct: 308 LKSKGVNYNSTGKPEVDLLREMIYLL 333 >gi|281412241|ref|YP_003346320.1| DNA polymerase III, delta subunit [Thermotoga naphthophila RKU-10] gi|281373344|gb|ADA66906.1| DNA polymerase III, delta subunit [Thermotoga naphthophila RKU-10] Length = 324 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 36/293 (12%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G K + + + + + I + + + ++FS K II I N Sbjct: 7 TGTAETQKEGLIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIK-KNNTLR--KIAEKFTSVLAISCYPDN 146 K L E++ + I I+S + K L K E + Sbjct: 64 FDEWKAQEQKRLVELLKNVPEDVHIFIRSQKTGGKGVALELPKTWETDKWL--------- 114 Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V Sbjct: 115 -----EWIEKRFRENDLIIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDRKITVEDV 168 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ ++ A +GK A L + F L KI + Sbjct: 169 EEVVFTYQTPGYDDFCFAVSEGKRKLAHTLLSQLWK-NTEPVVIATVLANHFLDLFKILV 227 Query: 267 IKECSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 + ++ ++ E + + L + W ++ L+ Sbjct: 228 LVTKKRYYTWHDVSRVSKELEIPV-----PRVARFLGFSFKTWKFKVINHLLY 275 >gi|290960524|ref|YP_003491706.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260650050|emb|CBG73166.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 332 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 11/282 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ N + ++ + ++++ + K Sbjct: 59 PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 117 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + + +S + EA Q L+ +G D Sbjct: 118 ALLDAARKAGAREVACPKMTKPGDRLAF-VRGEFRMLGRSATPEACQALVDAIGSDLREL 176 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +L + I E V E+ + ++G+ A+ + LA+ Sbjct: 177 AAAASQLV--ADVEGTIDEAVVGRYYRGRAEASSFEVADRAVEGRAAEALEALRWSLATG 234 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + I + + ++ P K + +++ +R W + Sbjct: 235 VAPVLITSALA---QGVRAIGKLSSARGGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 289 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 V L + + + + + ++ IA+ A Sbjct: 290 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVVIARAARSRR 331 >gi|222099480|ref|YP_002534048.1| hypothetical protein CTN_0506 [Thermotoga neapolitana DSM 4359] gi|61657316|emb|CAI44236.1| hypothetical protein [Thermotoga neapolitana] gi|61657338|emb|CAI44257.1| hypothetical protein [Thermotoga neapolitana] gi|221571870|gb|ACM22682.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 324 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 26/295 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V G+ + ELI + K + + ++ + K ++ + IN+ ++FS Sbjct: 2 PVTFLTGASETKKEELIKKLLK------DEKAEYIRIHPDDPDK-LNFLRSIINTRTIFS 54 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K ++ I + + + E++ + I + R V Sbjct: 55 GKTVVDIIDFDSWRSQEQKRFLELVKNVPEDVHIFV-----------RSQKSTAKGVNLD 103 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 P ++ IE+ I+K+A Q+ + +G + + E++KL +Y E Sbjct: 104 LPKPWETDKWLEWIEKRFRESGLKITKDALQLFFSKVGTNDLLIEREIEKLKAYS-ETGN 162 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+ + V++++ +E A +GK A L + + F Sbjct: 163 ISAEDVEEVVFTYQSPGYDEFCFAVSEGKRRLAHALLSQMWK-NTEPVVISAVLVNHFLD 221 Query: 261 LEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 L K+ ++ KI ++ + P L + + W ++ L+ Sbjct: 222 LFKLVVLVTRKRYYTWPDISKISKELGMPV-PRVARFLGFAFKAWKFKVINHLLY 275 >gi|303236498|ref|ZP_07323085.1| DNA polymerase III, delta subunit [Prevotella disiens FB035-09AN] gi|302483349|gb|EFL46357.1| DNA polymerase III, delta subunit [Prevotella disiens FB035-09AN] Length = 341 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 100/264 (37%), Gaps = 17/264 (6%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ +++ F +++ G + I ++ + +N+ F+L V Sbjct: 13 MSDLKARNF-----------SPIYLLMGEESYYIDKISDYIAENVLTPEEQDFNLNVCFG 61 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + + +++++++++ + D LE+ + +++ Sbjct: 62 ADVSA--VQVTDMAKRFPMMAERQVVIVKEAQNIHSL-DALEKYLKNPAKTTVLVWCHKN 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 K + + + + + + L +++ L+ + +I +A Q++ ++G D Sbjct: 119 GKIDARKKVVGLAQANGVVFESRKIKEYQLAGFMQKYLVTKKIAIDPKAAQMIADHVGAD 178 Query: 181 RIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +EL K++ + IT + V+ I + E+ ++ + I+ A + ++ Sbjct: 179 LNRLTSELDKVALSLPENNKKITPEIVEKEIGVSKDFNTFELRDSIVHRNIFKANQIVNY 238 Query: 240 FLASKMPSHA--LLHGFLQKFQLL 261 F + L FQ L Sbjct: 239 FDKNPKAGSLYSFLPLLFSYFQNL 262 >gi|15642955|ref|NP_227996.1| hypothetical protein TM0181 [Thermotoga maritima MSB8] gi|4980677|gb|AAD35274.1|AE001703_3 hypothetical protein TM_0181 [Thermotoga maritima MSB8] Length = 324 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90 G + K + + + + + I + + + ++FS K II I N Sbjct: 7 TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63 Query: 91 LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 K L E++ + I I R V P Sbjct: 64 FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 ++ IE+ I K+A Q+ + +G + + E++KL +Y ED IT + V+++ Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDRKITVEDVEEV 171 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A +GK A L S + F L KI ++ Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTESVVIATVLANHFLDLFKILVLVT 230 Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311 ++ ++ + + L + W ++ L+ Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVMNHLLY 275 >gi|218961343|ref|YP_001741118.1| putative DNA polymerase III, delta subunit (holA-like) [Candidatus Cloacamonas acidaminovorans] gi|167730000|emb|CAO80912.1| putative DNA polymerase III, delta subunit (holA-like) [Candidatus Cloacamonas acidaminovorans] Length = 349 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 129/334 (38%), Gaps = 13/334 (3%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-DPFSLVVLNALEIQKNI 67 F T + ++ G+D L+ +++ + + D F + + K+ Sbjct: 22 FALDFTADKVRLGSSYLLIGTDSYLVDRVLDSIRAKLKKKEKVDTFII----YGDEVKSP 77 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + +++ S+FS K+I+I+N + K K L L + + I + + + Sbjct: 78 E-LADLLDTYSIFSAAKLIIIKNAESLKTKELSTLADYFSSPSEIQSLAIVTEKADARHE 136 Query: 127 LRKIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K + T ++ Y + ++++L K ++ +A + L + D + Sbjct: 137 NWKKIKAGTKLITCDPPPY---GGAIRTWLDKALKDINKKMTDKAIEEFLNRIELDYYNA 193 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 NEL KL + ITE+ + + T + + A + + AI + L + Sbjct: 194 ANELTKLDLLTRDRTTITEEDIMQSLGTTRSGTLIDFYRALGRKQAKQAIEAMEKMLFAD 253 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 +L + + + KI ++ + ++I+ +I+ K + P +R + R +N N Sbjct: 254 WKPLQILFQLTRFYFNIWKI-LLLKKAHITDNEIVSKYITDFHPNQRREFLDLSRYYNIN 312 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + + + ++ +L I Sbjct: 313 ALEKIFALLLETDQQFKLTVAEPQILLCNCLLKI 346 >gi|260581749|ref|ZP_05849546.1| DNA polymerase III, delta subunit [Haemophilus influenzae NT127] gi|260095342|gb|EEW79233.1| DNA polymerase III, delta subunit [Haemophilus influenzae NT127] Length = 344 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 119/318 (37%), Gaps = 26/318 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133 K+I+ + +L L+E+I + ++I++ L K+ EK Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKVLEKQTWFITL 129 Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + I+C +L ++ EA Q L + + +A + LQ Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L D + V ++ + + + I+A + GK A + A + L Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248 Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305 L ++ L ++ I +S ++I + ++ I +R + +++ Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLSTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308 Query: 306 VRETLHKIDHRIHLARKK 323 + E + ++ + LA+++ Sbjct: 309 LYEIIQELANIERLAKQE 326 >gi|307719871|ref|YP_003875403.1| hypothetical protein STHERM_c22020 [Spirochaeta thermophila DSM 6192] gi|306533596|gb|ADN03130.1| hypothetical protein STHERM_c22020 [Spirochaeta thermophila DSM 6192] Length = 326 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 121/330 (36%), Gaps = 18/330 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSL 79 +F G + GL E ++ K++++ Y + + +F + + + SL Sbjct: 7 IFFLLGPETGLKEEYLHTLKQDLTKAYG------AIEEEHLYAFEDSFSDALPRLQNASL 60 Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F + ++LI N L + + + ++I S+EI+ L K+A T + Sbjct: 61 FGEHTLLLIHNAERLSTQDQNLLALYAQTPSPSSTLVILSDEIRLPQRLEKLASHHTREV 120 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 D K +I ++L +SI+ EA + L + A E +L+ + E Sbjct: 121 FWELREDQK---ARMIHQTLKRSGRSIASEAVDLFLQMVSPVSSALVEEASRLAFFFPEG 177 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ITE+ ++ + + + + + I A+ L+ H ++ G L +F Sbjct: 178 HTITEKDIEQFLFHSREENVFTLFAHLARRDIEAALECTSALLSQSEAVHQIIGGLLWQF 237 Query: 259 QLLEK-IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L + ++ E + + ++ +LR + + + ++ Sbjct: 238 RRLLTVMRLLGERYGREEAFREAGIR-GMGFKRT--METALRNYTLEETQRAIVELVSCD 294 Query: 318 HLARK-KKYLEKNIIFQTILYIAQTACKNN 346 R ++ L I + I + Sbjct: 295 EQVRLHRRELHPLIFTLALHRIVRHPRAAR 324 >gi|311747249|ref|ZP_07721034.1| DNA polymerase III, delta subunit [Algoriphagus sp. PR1] gi|126578960|gb|EAZ83124.1| DNA polymerase III, delta subunit [Algoriphagus sp. PR1] Length = 343 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 105/306 (34%), Gaps = 18/306 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + + F+ VVL + ++ T N + + Sbjct: 22 PIYFLDGDEPFYIDQITEIIENTAIAEHERGFNQVVLYGKD--SDMGTIINNARKFPMMA 79 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKF 134 +++++++ + K+ L +N I++ +++ KK + L K E Sbjct: 80 DRQVVIVKEAQSLTDLGKEEAQKLLIGYAQNPLPSTILVLAHKYKKFDRRSALSK--ELQ 137 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + ++ L + + + I A Q L ++G + NE+ K+ Sbjct: 138 KNAIYVTSEKIKDYKLTEWVLQYFKDIGHDIEPRAAQFLAESIGNNLEVMTNEVGKMLIN 197 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHG 253 E T + + I E++ A + + ++F+ + K L Sbjct: 198 FKEPTKFTVKDISKFIGINKDYNNFELLKAIGMKDPIKSNKIVNYFIQNPKAHPVIPLFA 257 Query: 254 FL-QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + F L IH + S+ +I + + +Q + R + V + Sbjct: 258 LMYNYFTKLAMIHEVGGGSDSQVASLIG--VPP--FVAKEYMQSA-RNYKLGKVIDVFEY 312 Query: 313 IDHRIH 318 + Sbjct: 313 LKEADL 318 >gi|226307256|ref|YP_002767216.1| DNA polymerase III delta subunit [Rhodococcus erythropolis PR4] gi|229493143|ref|ZP_04386935.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121] gi|226186373|dbj|BAH34477.1| putative DNA polymerase III delta subunit [Rhodococcus erythropolis PR4] gi|229319874|gb|EEN85703.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121] Length = 325 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 99/306 (32%), Gaps = 16/306 (5%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH---DPFSLVVLNALEIQKNISTFW 71 N + + G D+ LI ++Q + + + + A + Sbjct: 2 SNPSGVDPLHLVLGDDEFLIDRTVSQLIRAVRGDRGQGISDLPVTKMRAGDTNAPE---L 58 Query: 72 NEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 E+ S SLF++ ++I++E+ + K + + E + ++I+ + + L Sbjct: 59 AELLSPSLFAEDRVIVLESAAEAGKDAVALVLEAAREPAEGVVLIVVHSGGGRAKALAPA 118 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 EK + + +C NK L+D + ++ +A ++ ++G + + + Sbjct: 119 LEKLGATVH-NCGKLNKSQLVDFVRGEFRTADVRVAPDAIAAMIESVGSNLRELASACSQ 177 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ I V + ++ + I G A+ + L Sbjct: 178 LAADTGGK--IDVDAVHKYYSGKAEVSGFDVADKVIVGDTRGALEALRWADQIGTAHVLL 235 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309 + K+ + ++ + + + + W+ + Sbjct: 236 ADALADAVHTIAKVGPFARGGD--PFRLASDLGMPP--WKVKKAI-KEVGGWDPTSIGAA 290 Query: 310 LHKIDH 315 + + Sbjct: 291 MQIVAA 296 >gi|154492158|ref|ZP_02031784.1| hypothetical protein PARMER_01790 [Parabacteroides merdae ATCC 43184] gi|154087383|gb|EDN86428.1| hypothetical protein PARMER_01790 [Parabacteroides merdae ATCC 43184] Length = 340 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 17/259 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G + + ++ + +N+ F+ +++ + + ++ N + S Sbjct: 22 PVYIMMGDEPFFMDQITDLLLENVLEESERDFNQIIMYGADT--DAASIINAARRFPMMS 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136 K +++++ + + + L + + + +++I + + L +K Sbjct: 80 KYQLVVVREAQLIRDI-ELLSNYVKNPLMSTVLVINYKYKNLDRRKALASATDKTGVLFE 138 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I Y + I + + I +A Q+L LG D EL KL+ Sbjct: 139 SKKIPDY-----KMPAFIASFMQMRSIGIDGKASQMLSDFLGNDLSRLSKELDKLALILP 193 Query: 197 EDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E IT + V+ I + E+I A + A +A +F + P L Sbjct: 194 EKGAKRITPELVEQNIGISKEYNNFELIKALAMKDVLKANRIAQYFEKNPKSNPIQMTLP 253 Query: 253 GFLQKFQLLEKIHIIKECS 271 F L + K+ S Sbjct: 254 VLFNYFSNLLICYYTKDRS 272 >gi|225016333|ref|ZP_03705525.1| hypothetical protein CLOSTMETH_00236 [Clostridium methylpentosum DSM 5476] gi|224950876|gb|EEG32085.1| hypothetical protein CLOSTMETH_00236 [Clostridium methylpentosum DSM 5476] Length = 350 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 133/363 (36%), Gaps = 34/363 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDK-------GLIFELINQFKKNISITYHDPF 53 M TI F++ + F +++ YG + L+ + +K +++ F Sbjct: 1 MPTINDQAFVKSIRQGEFA--NLYMLYGKETYMLEGCLKLLLDRAVTVQKMLNLNR---F 55 Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEK---KVLDCLEEIIIKNIC 110 EI+ N + + + ++ +++ +L+ EK + L+ I Sbjct: 56 DGAKCTLEEIE-------NVTETLPVLAPRRCVVVSDLNVEKLGKNQYEQLKGIACNLPE 108 Query: 111 NHIIIIKSNE----IKKNNTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI 165 ++++ ++K+ R + + + + P + L ++ + + Sbjct: 109 TTVLVLAYPNTEINLRKSARYRAFSTLVSKNGVLVEFSPKTQSELSKVLAKRAAKQGAEL 168 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 + A + L G + EL KL++Y +D +I + V +++ + ++ A Sbjct: 169 TPAACRRLTDCCGTELSRLTVELDKLAAYAGQDGVIGPEMVDELVVPSVDSSSFDLARAI 228 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-K 284 +QG+ A L + + +L F + + + + + I K Sbjct: 229 LQGRDQQAFSLLGELFDQRQEAITILGALNMSFIDIYRAKC-AQAAGKDADAITSVFSYK 287 Query: 285 NIIPMKRNILQESLRIWNKNLVRETLHKIDHR---IHLARK-KKYLEKNIIFQTILYIAQ 340 RN ++++ ++ ++ L + + +R + + + I + +L AQ Sbjct: 288 GKEFRMRNSMRDA-SRFSPARIKRCLGILMEADVKLKSSRADNRIILETAIARMMLVDAQ 346 Query: 341 TAC 343 A Sbjct: 347 EAR 349 >gi|332799040|ref|YP_004460539.1| DNA polymerase III subunit delta [Tepidanaerobacter sp. Re1] gi|332696775|gb|AEE91232.1| DNA polymerase III, delta subunit [Tepidanaerobacter sp. Re1] Length = 314 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 122/299 (40%), Gaps = 16/299 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEINSTSLF 80 + +F+G +K LI E + + K+ I + + + L+ I+++I N + Sbjct: 3 NLILFFGEEKLLIKEEVAKIKQKIVPKNLEAINFIPLDGKTVIEEDILK---ACNIVPMM 59 Query: 81 SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 S KK++++ + S + K D + + ++ + + K + K+ K Sbjct: 60 SAKKLVVVYDARFFESEKTKQEDYFLNELEIIPDHTYLVFTATKADKRRKIFKMI-KSKG 118 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 ++ + +++ + + KS+ + +A D + +EL+K++++ Sbjct: 119 IVR-EFNTPSLKDKALWVQQRIKLYGKSMDLKT-AYFIAEYTADLYQTDSELRKIAAFLA 176 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 E + + ++ DI + I E+++ K A+ + + L +L+ + Sbjct: 177 EKQTVEQNNLSDIFYKSLEGNIFEMMDCIGSKKSTEAVKIINRLLEQGEKGIVILYMISK 236 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 L + + +SF++I +K+ + +++ I + + + ++ +L Sbjct: 237 HVMNLITVKSL---QGLSFQEITEKSGLHPFVIRKAI--KQSENFTLDELKRSLKLCQD 290 >gi|160872039|ref|ZP_02062171.1| DNA polymerase III, delta subunit [Rickettsiella grylli] gi|159120838|gb|EDP46176.1| DNA polymerase III, delta subunit [Rickettsiella grylli] Length = 353 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 86/221 (38%), Gaps = 2/221 (0%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICN 111 F+ + + Q N + +N+ LFSKK+ + + + +++ L + + Sbjct: 47 FTCRQVFYADKQFNSALLVANMNNYGLFSKKQFLELHLSQGFSEELTKALTQYAQSPPHH 106 Query: 112 HIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 ++I + +++ +K L + +P + L+ I E + I K A Sbjct: 107 QCLLIITGKLEYRLQQTAWFKKIDKIGLIVPLWPLQRPQLILWITERVHAYGLKIEKAAI 166 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 L+ G+ +A+ ++KL Y ++ LIT + ++ +C ++ +A + G Sbjct: 167 DYLMYATEGNLLATAQAIEKLRLYVDKNNLITIECLEQTLCHNVRFDPFKLTDAALTGNA 226 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + + + +L ++ +LL + Sbjct: 227 KRCLRILMHLEEDGIEPLFILWALSRECRLLASLAFELNQG 267 >gi|311743008|ref|ZP_07716816.1| DNA-directed DNA polymerase III delta subunit [Aeromicrobium marinum DSM 15272] gi|311313688|gb|EFQ83597.1| DNA-directed DNA polymerase III delta subunit [Aeromicrobium marinum DSM 15272] Length = 327 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 109/329 (33%), Gaps = 18/329 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLF 80 V + G+ + L + ++ T + + + S SLF Sbjct: 7 KVLLISGNAEFL----AERTRRRAVDTIRSQQADCEIAESSAAGLGPGELAG-LTSPSLF 61 Query: 81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFT 135 S +++ +L E+ + L + + ++++ K LRK Sbjct: 62 SSASALVLTDLQDLPEQPQAELLAYVADPSPDIAVVLVHGGGAKGRGLLDKLRKHPAVTE 121 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + Y ++ + E L I ++A +L+ ++G D + +L + Sbjct: 122 VKVEAPKYE---RDVVRWLREELRALGAVIDEQAATVLVTSVGQDLRSLAGAADQLIASV 178 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 I+E+ V+ + E+ +AT+ G+I AI A + +K+ + Sbjct: 179 PPGSEISEEVVRRYFGGRAEVRGYEVADATLDGRIDIAIERARWAATAKVAPVLITSAMA 238 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + L K+ + R L+ L+ W+ + +R+ L + Sbjct: 239 AGLRQLVKLATAPPGLRDAELAAHVGAPP---FKLR-ALRGQLQTWDPDGLRQALDHVAQ 294 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + + +L IA + Sbjct: 295 ADLDVKGASADPAYAVERMVLRIAALRRR 323 >gi|239979393|ref|ZP_04701917.1| DNA-binding protein [Streptomyces albus J1074] Length = 329 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 14/292 (4%) Query: 59 NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113 + ++ + T E+ S SLF+++K++++ N + ++ + + + Sbjct: 44 DVRDLTSDQLQPGTLA-ELTSPSLFAERKVVVVRNAQDLSADSVKDVKAYLGAPVEEITL 102 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 +++ + K L + +A L + ++ + EA Q L Sbjct: 103 VLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRALGRTATPEASQTL 161 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + +G D + + +L+ + I E V + + ++G+ A Sbjct: 162 VDAIGSDLRELASAVTQLA--ADVEGNIDEAVVGRYYTGRAEASSFTVADRAVEGRTAEA 219 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + L++ + + Q + I + + ++ P K + Sbjct: 220 LEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 274 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 +++ +R W + V L + + + + + ++ IA A Sbjct: 275 VRQQMRGWTPDGVATALRAVALADAGVKGGGDDPEYALEKAVVAIATAARAR 326 >gi|319947363|ref|ZP_08021596.1| DNA-directed DNA polymerase III delta subunit [Streptococcus australis ATCC 700641] gi|319746605|gb|EFV98865.1| DNA-directed DNA polymerase III delta subunit [Streptococcus australis ATCC 700641] Length = 345 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 24/273 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + Q K + D F + E++ + + S Sbjct: 17 PILVLSGDDIGQFEWMKEQLLKKVGYNSSDLNYSYFDMKETAYAEVELD-------LVSL 69 Query: 78 SLFSKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +KI++++ +++T KK L E+ + + +I+ + ++ + Sbjct: 70 PFFADEKIVILDHFIDVTTAKKRYLTDDELQSFEDYLAAPLETTRLIVIAEGKLDSKRRI 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ +L + + L E + +I +A LL G D + Sbjct: 130 VKLLKRDAQLLEAT--ELKEQELRAHFTEEIKSLGLAIDSQAFDQLLIKSGFDFSEIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ L +Y IT +++ I T + ++I ++ +I +A L Sbjct: 188 LEFLKTYK-GASSITISDIEEAIPKTLQDNLFDLIQMILKKQIDSARSLVKDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 LL L +F++ ++ ++K+ + + Sbjct: 247 IKLLAILLSQFRIFTQVKLLKQEGRTEPQIVSD 279 >gi|68249509|ref|YP_248621.1| DNA polymerase III subunit delta [Haemophilus influenzae 86-028NP] gi|68057708|gb|AAX87961.1| DNA polymerase III, delta subunit [Haemophilus influenzae 86-028NP] Length = 344 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 117/312 (37%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + L +++ Sbjct: 315 ELANIERLTKQE 326 >gi|227504491|ref|ZP_03934540.1| DNA polymerase III delta subunit [Corynebacterium striatum ATCC 6940] gi|227198908|gb|EEI78956.1| DNA polymerase III delta subunit [Corynebacterium striatum ATCC 6940] Length = 315 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 111/333 (33%), Gaps = 33/333 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + G D+ L E + + +V L A E+ + S SLF Sbjct: 4 VHLILGDDEFL-TERARLSIQKAAGEG---VEVVRLKASEVSEGEIAM---ATSPSLFGD 56 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTLRKI 130 ++I+I ++ K++ L + ++ + + +K LRK+ Sbjct: 57 NRVIVISDVEKVGKELTQVLLTAVADPGPGMTLVLIYTVTAKTLKGKKKPPEIVAKLRKV 116 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E A S YP+ L + + Q +L +G D + + + Sbjct: 117 GEVHE---AFSLYPNE---LGSWATREFASHGVRPTPDVVQAVLDGVGSDLRELASAISQ 170 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + +T + V + + +I +A + G++ A+ L A+ Sbjct: 171 LVFDT--NGNVTREAVHNYYVGIAEVANWDIADAAVAGRVEAAVSTCRRALQLGASPVAI 228 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 K + +++ + + ++ M + + R W+++ V + + Sbjct: 229 AAALANKVGAIARLYSAR--GDQYSLAKDTGLAPYVVKMTQPVA----RRWSEDNVNKAV 282 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + E I + +A+ A Sbjct: 283 ILMAELDAAVKGQGGDEDFAIEAAVRRVAELAR 315 >gi|302206693|gb|ADL11035.1| DNA polymerase III delta subunit [Corynebacterium pseudotuberculosis C231] Length = 324 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 102/292 (34%), Gaps = 18/292 (6%) Query: 22 FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V + G D+ L E + +I D ++ L A E+ + S + + S SLF Sbjct: 7 PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 62 Query: 81 SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +II++ + ++ L + ++II+ S ++ T+ K + Sbjct: 63 GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHA 122 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A P + + + + + LL +G + + + +L + Sbjct: 123 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 177 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+D + ++ + G+ A+ A L + AL K Sbjct: 178 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 237 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309 + +++ + I + ++ + K + + WN + + + Sbjct: 238 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 284 >gi|295092104|emb|CBK78211.1| hypothetical protein [Clostridium cf. saccharolyticum K10] Length = 156 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +EL+KL SY + ++T + V+ + I E++NA + GK A+ L + L K Sbjct: 6 SELEKLISYTMGREVVTAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKE 65 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 P +L ++F L + + + + ++ ++ R + + Sbjct: 66 PPMRILFLIARQFNQLFLTKELLDSGADRAAIASKLKVPP--FVAGKLMPQA-RSFTREQ 122 Query: 306 VR---ETLHKIDHRIHLARKKKYLEKNI 330 + E + + + R + + Sbjct: 123 IAGCVEACVEAEEAVKTGRLGDRMAVEL 150 >gi|168184362|ref|ZP_02619026.1| FAD/FMN-containing dehydrogenase [Clostridium botulinum Bf] gi|182672498|gb|EDT84459.1| FAD/FMN-containing dehydrogenase [Clostridium botulinum Bf] Length = 327 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 90/247 (36%), Gaps = 20/247 (8%) Query: 33 LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 LI + + F K + + ++ ++ I++ + F IN+ K++I + Sbjct: 17 LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVISM 75 Query: 89 EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139 E + K ++ L + + + + S I KN+ ++K + ++ Sbjct: 76 ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D ++ + +I+ EA + + IA E++KL CL Sbjct: 136 GEFQSD---YVKKVCNSIFARHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + + + I + I ++ ++ + I L ++ + L + Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDINGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249 Query: 260 LLEKIHI 266 +L++ + Sbjct: 250 MLQEARL 256 >gi|313203213|ref|YP_004041870.1| DNA polymerase iii, delta subunit [Paludibacter propionicigenes WB4] gi|312442529|gb|ADQ78885.1| DNA polymerase III, delta subunit [Paludibacter propionicigenes WB4] Length = 338 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 104/306 (33%), Gaps = 24/306 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I + + +KN+ F + +L +I +I+T N + Sbjct: 22 PVYFLMGEEPYYIDVISDFIQKNVLDETEREFDMTILYGKDI--DITTVINAAKRYPMMG 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 ++++I+ K D + + + I+++ K K +K ++ V Sbjct: 80 AYQVLIIKEAQLIKDW-DNFVHYLSNPLKSTILVLCYKYGMPDKR---KKWFQEVLKVAT 135 Query: 140 ISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + Y L D I + +I ++A ++ LG D NEL KL Sbjct: 136 V--Y--ESAKLRDYEVGSWITKYCKSKNVAIDEKAVAMIAEFLGTDLSKLVNELDKLLLT 191 Query: 195 C-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALL 251 + +T + V+ I + + E+ A I + + +F +K P +L Sbjct: 192 KPADMQRLTPELVEKNIGISKDFNVFELQAALINKDVVKVNRIIRYFAENKKANPMVMVL 251 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETL 310 + F L H + + S + + +S W + + Sbjct: 252 SQLFKFFSDLMIYHYLSD---KSQGAVASELRINPYFVKDYQKAAQSFGAWKTMNIISWI 308 Query: 311 HKIDHR 316 D R Sbjct: 309 RDTDAR 314 >gi|145632301|ref|ZP_01788036.1| DNA polymerase III subunit delta [Haemophilus influenzae 3655] gi|229844022|ref|ZP_04464163.1| DNA polymerase III subunit delta [Haemophilus influenzae 6P18H1] gi|144987208|gb|EDJ93738.1| DNA polymerase III subunit delta [Haemophilus influenzae 3655] gi|229813016|gb|EEP48704.1| DNA polymerase III subunit delta [Haemophilus influenzae 6P18H1] Length = 344 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 118/318 (37%), Gaps = 26/318 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133 K+I+ + +L L+E+I + ++I++ L K+ EK Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKVLEKQTWFITL 129 Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + I+C +L ++ EA Q L + + +A + LQ Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L D + V ++ + + + I+A + GK A + A + L Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248 Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305 L ++ L ++ I + ++I + ++ I +R + +++ Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308 Query: 306 VRETLHKIDHRIHLARKK 323 + E + ++ + LA+++ Sbjct: 309 LYEIIQELANIERLAKQE 326 >gi|313115851|ref|ZP_07801284.1| DNA polymerase III, delta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621828|gb|EFQ05350.1| DNA polymerase III, delta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 342 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 38/332 (11%), Positives = 117/332 (35%), Gaps = 25/332 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ FY S++ L+ + + + ++ + +++ A EI++ + S F Sbjct: 16 PVYYFYSSERYLVRQAVTAITRILTADSDEDATVLDGAAPEIEQ----LIMAAGTISFFG 71 Query: 82 KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133 ++++++ + LEE+ + ++ N ++++ + +++K +K+ Sbjct: 72 TRRVVVLPEIDPAAYSDKDLEELNSTLSSLENAVVVLGSVFELERSKLKTGKRAQKLI-- 129 Query: 134 FTSVLAISCYPDNKI-----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 A+ Y + L ++ + + ++ A LL G D NE+ Sbjct: 130 -AQCKALG-YTEELAKPKPFELKMMMIDRAKEQKTTLPDGAAAALLERCGEDPFLLENEV 187 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL + +T V ++ + + E+I A L + Sbjct: 188 DKLCALS-GYQTVTAAMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPI 246 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVR 307 A+ + + L ++ + ++ + + K + + + + + Sbjct: 247 AITAAMIGSYVDLYRVKLGA-AKRKNYSTVFKDFGYKGSDYRLKRSAETA-SHYTLGQIE 304 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + + + ++ ++ + +A Sbjct: 305 NCMQVLLELDQSLKSQPTDDQILLETALCRLA 336 >gi|194337562|ref|YP_002019356.1| DNA polymerase III, delta subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194310039|gb|ACF44739.1| DNA polymerase III, delta subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 346 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 32/230 (13%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80 V++FYG++ L E + K + + D + +L A ++ ++ + +F Sbjct: 15 PVYLFYGTESYLKEEFADLIKTAVFPSESDAACNTHILYAPDLT--PGELISKASEYPMF 72 Query: 81 SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------- 124 + K++I++ +K+ + + ++I+ + +I+K Sbjct: 73 TPKQLIIVRQFEKIKKPPTRELQKQHEEKFSRYLTNPAEFTVLILDAGQIEKKEIEKPPF 132 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 +TL+K F ++ + N+ S +A + A + Sbjct: 133 STLKKYRHDFPAIKTPELFASNRA----------KASGWSFEPDALKAFTAYIEPSAREI 182 Query: 185 RNELQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +E++K+ Y + IT V D + + + E+ A + + Sbjct: 183 CHEIEKIILYASARGAEKRITASDVLDSVGVSRTYNVFELEKALAERSLR 232 >gi|302340526|ref|YP_003805732.1| DNA polymerase III subunit delta [Spirochaeta smaragdinae DSM 11293] gi|301637711|gb|ADK83138.1| DNA polymerase III, delta subunit [Spirochaeta smaragdinae DSM 11293] Length = 342 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80 VF+ G ++G I + KK I+ DP + E + IS+ + + SLF Sbjct: 10 PVFLLLGPEEGEKAAFIAEIKKRIAA--EDPGYESTRFYPYETE--ISSIVGVLRNGSLF 65 Query: 81 SKKKIILIENLSTEKKVLDCLE-EIIIKNICNHIIIIKSNEIKKN--NTLRKIAEKFTSV 137 S +K+++I+N+ K+ L E + + +I+ SN ++++ + K Sbjct: 66 SSRKLVIIQNVEAIKRDDAALLGEYLKNPSTDATLIMVSNGMERDIAKAIASAVPKEHKK 125 Query: 138 LAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + K L + +S EA ++L + + + +L+ + Sbjct: 126 MFWELFENQKRSWLANY----FGRQHIEVSPEALDLILELVENNTREMKIACDQLALHFG 181 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHGFL 255 I E+ V I + + + AI L S L G L Sbjct: 182 PGSCIDEEDVDAFIFHSKEENVFTLFAKIGACDFSGAIEALRKLLLSGEGNPIQLFAGLL 241 Query: 256 QKFQLLEKI 264 +F+ L + Sbjct: 242 WQFKRLLSL 250 >gi|269127472|ref|YP_003300842.1| DNA polymerase III subunit delta [Thermomonospora curvata DSM 43183] gi|268312430|gb|ACY98804.1| DNA polymerase III, delta subunit [Thermomonospora curvata DSM 43183] Length = 319 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 38/310 (12%), Positives = 101/310 (32%), Gaps = 23/310 (7%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + + G ++ L+ E + ++ L ++ E+ S S Sbjct: 2 PADPLTLIVGDEE-LLAERAVGEVIAAARADDPETEVIDLTPENLEA--GRLA-ELTSPS 57 Query: 79 LFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNN---TLRKIAEK 133 LF K++++ + K+++ + + + ++ + + K L K + Sbjct: 58 LFGGGKVLVLRSAQDLGKELIAEVLAYAERPADDVALVAVHAGGAKGKALVDGLSKAGAR 117 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + I + + + +I EA + L+ +G D +L + Sbjct: 118 KVTCSKI----TKPGERVAFVRAEVRRCGGTIGAEAARALVDAVGHDLRELAAACSQLVA 173 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 I+E+ V + + ++ ++G + A+ + LA+ + + Sbjct: 174 DTGGK--ISEEAVARYYRGQAEVSGFNVADSAVEGDLVQALEKLRWALATGVAPVQITSA 231 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEK--NIIPMKRNILQESLRIWNKNLVRETLH 311 + + + + S K + P K + Q LR W+ + + L Sbjct: 232 LA------QGVRALAKVSGAPRGARGAALAKELGMPPWKIDKTQRQLRGWSADGIARALR 285 Query: 312 KIDHRIHLAR 321 + + Sbjct: 286 VVADADAQVK 295 >gi|218131100|ref|ZP_03459904.1| hypothetical protein BACEGG_02705 [Bacteroides eggerthii DSM 20697] gi|217986804|gb|EEC53137.1| hypothetical protein BACEGG_02705 [Bacteroides eggerthii DSM 20697] Length = 339 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 115/326 (35%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I L + NI F+L V+ ++ +++T N + Sbjct: 21 RPVYYLMGEEPYYIDLLSDYITDNILNETEKEFNLTVMYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE S + Sbjct: 79 SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKSGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197 L I + + +A +L +G D EL+KL + Sbjct: 136 LFESKKVRDAQLPTFITSYMKRKGVDMDPKATSMLADFVGTDLSRLTGELEKLIITLPKS 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ I A + +F + P L Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E + I R L ++R +N + + +I + Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338 ++ L + ++ + I I Sbjct: 312 TDAKSKGVGNSSLNDSDLLRELIFKI 337 >gi|61657426|emb|CAI44341.1| hypothetical protein [Thermotoga sp. RQ7] Length = 329 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 26/295 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V G+ + ELI + K + + ++ + K ++ + IN+ ++FS Sbjct: 7 PVTFLTGASETKKEELIKKLLK------DEKAEYIRIHPDDPDK-LNFLRSIINTRTIFS 59 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K ++ I + + + E++ + I + R V Sbjct: 60 GKTVVDIIDFDSWRSQEQKRFLELVKNVPEDVHIFV-----------RSQKSTAKGVNLD 108 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 P ++ IE+ I+K+A Q+ + +G + + E++KL +Y E Sbjct: 109 LPKPWETDKWLEWIEKRFRESGLKITKDALQLFFSKVGTNDLLIEREIEKLKAYS-ETGN 167 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+ + V++++ +E A +GK A L + + F Sbjct: 168 ISAEDVEEVVFTYQSPGYDEFCFAVSEGKRRLAHALLSQMWK-NTEPVVISAVLVNHFLD 226 Query: 261 LEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 L K+ ++ KI ++ + P L + + W ++ L+ Sbjct: 227 LFKLVVLVTRKRYYTWPDISKISKELGMPV-PRVARFLGFAFKAWKFKVINHLLY 280 >gi|315607799|ref|ZP_07882792.1| DNA-directed DNA polymerase III delta subunit [Prevotella buccae ATCC 33574] gi|315250268|gb|EFU30264.1| DNA-directed DNA polymerase III delta subunit [Prevotella buccae ATCC 33574] Length = 342 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 127/329 (38%), Gaps = 17/329 (5%) Query: 1 MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 MA +S ++L V++ G + I + + +N+ F+ +VL Sbjct: 1 MAEKKSGPSFDAIMRDLQARKFAPVYVLMGDESYYIDRITDYITENVLSPEERDFNQMVL 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116 + + + + S+ ++++++ + + + +E+ + K + + I+++ Sbjct: 61 FGADTTA--AQIADMARRYPMMSEYQVVVVKEAQNLRNL-EPIEKYLEKPVKSTILVLCH 117 Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 K+ + + +KI K +V + L IE L +I +A Q++ Sbjct: 118 KNGVLDRR---KKIFAKAQAVGVVFESRKLYDRELPPFIENYLKRKNAAIDPKATQMIAD 174 Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 ++G D +EL+K L S + +T + V+ I + E+ +A + ++ A Sbjct: 175 HIGADLNRLTSELEKVLISLPESNRRVTPEVVEREIEVSKDFNAFELRDAIVNRNVFKAN 234 Query: 235 MLADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + +F ++ ++ L FQ L + + + + R+ Sbjct: 235 QIIKYFDSNPKAGSIYSFLPLLFSYFQNLMIAYYAPKKQDADAVAKFLDLRNS--WAARD 292 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321 L +R ++ N + + K+ ++ Sbjct: 293 YLT-GMRNYSGNKTLQIIDKLREIDAKSK 320 >gi|302874291|ref|YP_003842924.1| DNA polymerase III, delta subunit [Clostridium cellulovorans 743B] gi|307689445|ref|ZP_07631891.1| DNA polymerase III subunit delta [Clostridium cellulovorans 743B] gi|302577148|gb|ADL51160.1| DNA polymerase III, delta subunit [Clostridium cellulovorans 743B] Length = 343 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 111/328 (33%), Gaps = 18/328 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +I +G ++ LI E I K + F L + I N + K Sbjct: 20 YILFGFNESLIKENIRNISKKQLDP--NFFDLNYVQFDGITSKAEDIINSCETLPFMDSK 77 Query: 84 KIILIENL------STEKKVLDC-----LEEIIIKNICNHIIIIK-SNEIKKNNTLRKIA 131 +I+++ ++ V + I K + I+I+ + K++ +KI Sbjct: 78 RIVVVYRAVFLEDDGKQQGVSAEDTFKKISAYIDKVPEHCILILYYVFDEKRDKASKKIK 137 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + L ++ + I K + + L + NE++KL Sbjct: 138 ALEKKCTVVEFKQLKSATLQKKVKVLFEERNQPIEKAELSLFCSGLDNNMDIIINEVEKL 197 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y L IT++ + + I +++ Q A+ + + + +L Sbjct: 198 CCYALG-RTITKEDIFLLAPPKSDSDIFNLVDYVSQKNTKVALDILNELIFRGEKFPVIL 256 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++F+++ + + + E + ++ ++ P + + + + + + L Sbjct: 257 SMIERQFKIILSLKL-GSKKGKNLEVLSKEL--HLNPYIAEKMMAQSKKFTEEKLMKILG 313 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + K + + ++ IA Sbjct: 314 HCLESERILKSSSVDVKIELERLLIKIA 341 >gi|255020634|ref|ZP_05292696.1| DNA polymerase III delta subunit [Acidithiobacillus caldus ATCC 51756] gi|254969870|gb|EET27370.1| DNA polymerase III delta subunit [Acidithiobacillus caldus ATCC 51756] Length = 329 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 9/189 (4%) Query: 68 STFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +E ++ +LF++K+ I+ ++ L + + L + + + + + Sbjct: 60 ERLRDERDALTLFAEKRCLILQMDQLKLSRAATNALAHWLAAPAEMARLCLVGP--RPDA 117 Query: 126 TLRKIA---EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +K A + + YP N + L A+ +L G+ + Sbjct: 118 GQQKSAWFRDLEKHATVLILYPPNAQEWPQWVGRRLQQAGLEADDSARHLLCELTAGNLV 177 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A + + +L + I V++++ D + E+ +A ++G++ + D Sbjct: 178 ACQQAILRLREFAG--TRIDAATVRELLADDSRFTVFELADAALRGEVERIDHILDRLRG 235 Query: 243 SKMPSHALL 251 LL Sbjct: 236 GDAEPVLLL 244 >gi|88855050|ref|ZP_01129715.1| DNA polymerase III, delta subunit [marine actinobacterium PHSC20C1] gi|88815578|gb|EAR25435.1| DNA polymerase III, delta subunit [marine actinobacterium PHSC20C1] Length = 347 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 107/333 (32%), Gaps = 21/333 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN---ISTFWNEINSTS 78 + + G++ G + + + + + L +++ + + S S Sbjct: 29 PIVLVSGTE-GFLADRAIRLLRETLKVEDPSLEVSDLEVSDLEADQYAPGELI-SLASPS 86 Query: 79 LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTS 136 LFS+ ++I I N+ + + + ++++ + ++ L I Sbjct: 87 LFSEPRLIRITNVEKCTDAFITETLSYLNAPADDTYVVLRHAGGVRGKKLLDAIRAGAGG 146 Query: 137 VLAISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I C D K + ++ A + L++ D Q+L Sbjct: 147 GIEIMC-VDLKKDTEKYEFAAAEFSSKGRRVTPGALRTLVSAFSADLAELAAACQQLI-- 203 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + I E V ++ ++ I G+ A++L LAS ++ F Sbjct: 204 ADDADEINEATVARYYSGRVETSAFKVADSAIAGRPGEALVLLRHALASGADPVPIVAAF 263 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 K+ + + S S + P + + ++ W+ + + I Sbjct: 264 A------MKLRTMAKLSGGSMSSGQAAKTFGMAPWQAERAMKDVKGWSDEGLGAAIETIA 317 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + L ++ +F IA A + N Sbjct: 318 DTDAQVK---GLGRDPVFALERMIAVVAARGNR 347 >gi|330752547|emb|CBL87494.1| DNA polymerase III subunit delta [uncultured Flavobacteria bacterium] Length = 265 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 97/250 (38%), Gaps = 10/250 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V+ G + I + I F+ + + +++ NE+ Sbjct: 18 VYFLMGDEPYFIDSITKTAIDTIIPDEDKTFNQAIFYGRD--SDVNIILNELKQYPFGFH 75 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140 K++I+I K + + LE K + I+I+ K+ ++ K + KI E ++ + Sbjct: 76 KRLIIIREAQHLKNI-EYLENYFEKPQVSSILIVCYKNKKLDKRKKIYKILE--SNHVIF 132 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + + D I + L I I +A L+ +G D NE+ KL S Sbjct: 133 NSQKIYDNKIADWIRKYLEIKNIVIEPKACSTLIEYIGNDLSKISNEINKLCSDSSIKK- 191 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL--ASKMPSHALLHGFLQKF 258 IT + D I + + E+ + + A+++ ++F A+K PS +L + Sbjct: 192 ITNDLINDQIGISKKYNLFELQKSLAKKDKNKALIIMNYFAANANKNPSVLILSSIFNYY 251 Query: 259 QLLEKIHIIK 268 L I IK Sbjct: 252 NKLLLIKQIK 261 >gi|68535645|ref|YP_250350.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium K411] gi|68263244|emb|CAI36732.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium K411] Length = 327 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 107/324 (33%), Gaps = 13/324 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G D L DP V + E+ S SLF+ Sbjct: 9 PINLIVGGDDFLAERRRQGIVNQARAASGDPNLPVEMRKASELSAPE--LAELLSPSLFA 66 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + +I+++ + K + L E IK+ + +++I + K N K+ + + + A+ Sbjct: 67 EDRIVVVTGVEDTGKEIVGLLEQAIKDPADGVVLIIVHTGKGRNK--KLVDSWPKLGAVV 124 Query: 142 CYPDN--KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + I++ +++E ++LL +G D + + +L D Sbjct: 125 FQAGALKGREQLAFIDQEFRSQGARVTREVCELLLDVVGSDLRQLASAISQLI--ADTDG 182 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + VK + E+ + I G + A+ LA L + L Sbjct: 183 HVDAAAVKRYYQGKAEVSGFEVADYAIAGNVRAAVALARRALQLGVAPVLLASALSS--- 239 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + I + NI+ + + + P K + + R W ++ + + Sbjct: 240 GIADIAKVAGAGNINSRR--DAAKFGMAPWKLDKTIRTARRWTTPMIAQAVQITAELDAG 297 Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343 + + + IA A Sbjct: 298 VKGHSADPDFAVEDAVRKIAHVAG 321 >gi|217967492|ref|YP_002352998.1| DNA polymerase III, delta subunit [Dictyoglomus turgidum DSM 6724] gi|217336591|gb|ACK42384.1| DNA polymerase III, delta subunit [Dictyoglomus turgidum DSM 6724] Length = 328 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 125/320 (39%), Gaps = 12/320 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F G +K L+ E + + KK + V A EI + + S SL Sbjct: 17 PVYLFTGEEKFLMEEALEELKKARFKNAN----YVAFFADEISWD--NLVPYLESPSLLG 70 Query: 82 KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 + +I+I + K + + +++ K + N I+ +N ++ A+ + Sbjct: 71 DQ-LIVIRHAQELKDQNMPKKLDLLFKRLTNTCIVFMANAEEEKAKRMSYAKYIPPEGLV 129 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 L I+E KSI +E+ L N E++K+ ++ E Sbjct: 130 EFTKFRADALRRWIKEKFQEKGKSIDEESIYFLSINYADKIGILMQEIEKICAFVGERNE 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 +T + +K ++ + ++A ++ A D + + +L +++ + Sbjct: 190 VTIEDLKKVLATQ-EVAFYTFLDALLRRDFLIAFSGIDALWSEGVYPQVILEIVIKQIRQ 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L +I+ + S ++I +K + +K++I E+L + + E + Sbjct: 249 LLRINALL-KDGYSSDEIKEKLGLHPFVVKKSI--EALTKYTAAELMEIYFLLRQVDMDY 305 Query: 321 RKKKYLEKNIIFQTILYIAQ 340 + ++ +I + IL + + Sbjct: 306 KTTSKDQRILIEKVILKLGR 325 >gi|119485565|ref|ZP_01619840.1| hypothetical protein L8106_24320 [Lyngbya sp. PCC 8106] gi|119456890|gb|EAW38017.1| hypothetical protein L8106_24320 [Lyngbya sp. PCC 8106] Length = 331 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 110/300 (36%), Gaps = 30/300 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++++G D+ + + ++ +++I F+ + IS N+ + Sbjct: 2 PVYLYWGDDEFSLAKAVDALRESILDPSWSTFNFDKILPDSQNSVISGL-NQAMTPPFGL 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS------------NEIKKNNTLRK 129 +++ + N ++ + + + + + +I ++ +K L++ Sbjct: 61 GNRLVWLVNTPITQQCSQEVYQELERTLA---VIPETTTLLLTTPNKPDGRLKSTKLLQR 117 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 A IS + ++ L +++ ++ ++L +G D NEL+ Sbjct: 118 HA-TVKEFSRISPWKTDQ--LEQRVKQVAAEVGVRLTSPGVELLAEAVGNDTQQLYNELE 174 Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL Y D + + + ++ + ++ A G A+ L + PS Sbjct: 175 KLKLYAGNDSEALKLEAIATLVQSNTQNSL-KLAQAIKAGNTNQALELIAALIDHNEPSL 233 Query: 249 ALLHGFLQKFQ-----LLEKIHIIKECSNISFEKIIQKTEKNIIPMK---RNILQESLRI 300 ++ + +F+ L +K+ I+ I ++ I ++ +++ L+ Sbjct: 234 KIVATLVGQFRTWLWVKLMIDRRVKDEREIAKVAEIGNPKR-IYFLRQEVQSLSVRQLQH 292 >gi|37519635|ref|NP_923012.1| DNA polymerase III subunit delta [Gloeobacter violaceus PCC 7421] gi|35210626|dbj|BAC88007.1| gll0066 [Gloeobacter violaceus PCC 7421] Length = 321 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 110/331 (33%), Gaps = 20/331 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V +++G D + + Q + + F+ + N+ S Sbjct: 2 PVHLYWGEDAYRRGQAVEQLRAAAVEPAWEAFNFGRYAGEALIDA----LNQAASAPFGG 57 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIK-----SNEIKKNNTLRKIAE 132 +++ +E + L L + N ++ +K + K+ E Sbjct: 58 GGRLVWVEEARIFSHCPEGELAELARTLPHLHPNGHLLFTLQGKPDGRLKSTKLVAKVGE 117 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 L I + + L +++ + ++S A Q+L +G D NEL+KL+ Sbjct: 118 VREFSL-IPPWQE--AKLKAQVQQMAQERKVTLSAPALQLLTEAVGNDTRRLDNELEKLA 174 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + + + V ++ T + + A+ + D L P+ + Sbjct: 175 LFAQGRS-VDAEAVGALVATTAHTSFQLAAALLAG-EAATALRVLDELLRRNEPALRIQA 232 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + +F+ + ++ E + I E P + LQ+ + + + L Sbjct: 233 VLVNQFRTWLWVRVLIEAGERDAQAIAAAAE-IANPGRVYFLQKEVERTSAERLGRVLPI 291 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + +A K E+ + +L+I Sbjct: 292 LLG-LEVALKSGRPERAALESAVLHIVNALR 321 >gi|16272860|ref|NP_439083.1| DNA polymerase III subunit delta [Haemophilus influenzae Rd KW20] gi|260580012|ref|ZP_05847842.1| DNA polymerase III, delta subunit [Haemophilus influenzae RdAW] gi|1170333|sp|P43747|HOLA_HAEIN RecName: Full=DNA polymerase III subunit delta gi|1573945|gb|AAC22583.1| DNA polymerase III, delta subunit (holA) [Haemophilus influenzae Rd KW20] gi|260093296|gb|EEW77229.1| DNA polymerase III, delta subunit [Haemophilus influenzae RdAW] Length = 344 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 119/312 (38%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + ++ D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANLQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + LA+++ Sbjct: 315 ELANIERLAKQE 326 >gi|302391382|ref|YP_003827202.1| DNA polymerase III subunit delta [Acetohalobium arabaticum DSM 5501] gi|302203459|gb|ADL12137.1| DNA polymerase III, delta subunit [Acetohalobium arabaticum DSM 5501] Length = 341 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 119/303 (39%), Gaps = 15/303 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G ++ L+ E I+QF F+L +N ++ N +N Sbjct: 16 NLYLLIGDEEYLMKEFIDQFITEFVEEEFKDFNLDTINDSN-DGFLTKLSNSVNQLPFMV 74 Query: 82 KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFT 135 ++I ++ K + L+E++ I+++K+ K L K ++ Sbjct: 75 DRRITILNGERLFTNRFNKDETEDLKELLNDFAETSILLVKTTNQPDKRRKLYKAFKESG 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 +L L + IE I +A ++L + +ELQK+S++ Sbjct: 135 QILDFENLK--YKALDEWIETRANELGNKIDSKAVKLLEKMFNNNLQRLDSELQKISTFL 192 Query: 196 LEDILITEQHVKDIICDT---HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++T + V+ II I + ++A + A+ L + + + LL Sbjct: 193 GSKEIMTFKKVRQIISKDRLLKENIIFDFVDAIGEQNNEQALHLLNQMINNGQSEIGLLM 252 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++ +L+ + + + ++I + ++ P+K+ I + + ++ + + + L + Sbjct: 253 MIARQVRLILQCKELYQ-QGKKPQQIANRLNQHPYPIKKCI--KQSKNFSISELEDILEQ 309 Query: 313 IDH 315 + Sbjct: 310 LLE 312 >gi|218133046|ref|ZP_03461850.1| hypothetical protein BACPEC_00908 [Bacteroides pectinophilus ATCC 43243] gi|217991919|gb|EEC57923.1| hypothetical protein BACPEC_00908 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 6/185 (3%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+ +E + ++I++ A Q LL G R E++KL Y L+ ITE + +I Sbjct: 9 LIRWVEGLVKAEGRTITRPAVQHLLDKTGVQMSNIRTEVEKLICYTLDKPEITEADIDEI 68 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 I ++I A + A+ L L + P +L+ ++F ++ ++ + Sbjct: 69 CTTQIQNKIFDMITAISMKRQKEALDLYYDLLMLREPPMRILYLITRQFNMMLQVKELV- 127 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH---RIHLARKKKYL 326 I ++ + + + + +RE L + R + Sbjct: 128 LQRYDQAAIAKQLGIAGFLVNK--YVNQSKHFAAEQIREALEYFAESETAVKTGRLDDKM 185 Query: 327 EKNII 331 +I Sbjct: 186 AVELI 190 >gi|308276936|gb|ADO26835.1| DNA polymerase III delta subunit [Corynebacterium pseudotuberculosis I19] Length = 320 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 102/292 (34%), Gaps = 18/292 (6%) Query: 22 FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V + G D+ L E + +I D ++ L A E+ + S + + S SLF Sbjct: 3 PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 58 Query: 81 SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +II++ + ++ L + ++II+ S ++ T+ K + Sbjct: 59 GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHA 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A P + + + + + LL +G + + + +L + Sbjct: 119 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 173 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+D + ++ + G+ A+ A L + AL K Sbjct: 174 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 233 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309 + +++ + I + ++ + K + + WN + + + Sbjct: 234 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 280 >gi|311031606|ref|ZP_07709696.1| DNA polymerase III subunit delta [Bacillus sp. m3-13] Length = 314 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 117/312 (37%), Gaps = 16/312 (5%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN---L 91 E+ N ++ F+L + E +++ + + +++++++ N L Sbjct: 2 KEIRNSIIEHALDEEEHDFNLSFYDMEEQPVDVAI--EDAETLPFMGERRVVVLSNPFFL 59 Query: 92 STEKKVL------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 + EK D I + I +I+++ K + + + + I P Sbjct: 60 TAEKSKSKVEHNTDRFLAYIQEAAPYTIFVIQASYEKLDERKKVVKQLKKQAEVIEVQPL 119 Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQ 204 + L ++E L +S A + LL G + E+ K++ Y + IT Sbjct: 120 GERDLKIWMKEKALQNGADLSDAASEELLKIAGVNLSVLSQEINKMAMYIGVSEPEITVD 179 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 VK + + + E+I + K+ A+ L + + L +F+LL ++ Sbjct: 180 VVKKLAAKSIEHSVFELIEKMVHRKVDEALGLFYDLVRNNEEPIKLHALIANQFRLLYQV 239 Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + E ++ + + + P + + + + + + + + + +L K Sbjct: 240 KDLSEQG--YSQQKMAGILR-VHPYRVKLASQQGGYFERAELMKMVDDLAEADYLM-KSG 295 Query: 325 YLEKNIIFQTIL 336 ++K + + +L Sbjct: 296 KIDKQLAMEMLL 307 >gi|300728130|ref|ZP_07061501.1| DNA polymerase III, delta subunit [Prevotella bryantii B14] gi|299774556|gb|EFI71177.1| DNA polymerase III, delta subunit [Prevotella bryantii B14] Length = 343 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 107/282 (37%), Gaps = 11/282 (3%) Query: 1 MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 M +S K+L + ++I G + I ++ N N+ F+ ++ Sbjct: 1 MVEKKSEVSYGSLMKDLKARNFSPIYILEGDESFYIDKISNYIVDNVLQPDQRDFNQTIV 60 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116 ++ + + + + ++ ++++++ K + D LE+ K + I++ Sbjct: 61 FGSDVTA--AQIVDIASRYPIMAEYQVVIVKESQNLKNL-DILEKYFQKPAKSTILVFCH 117 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 K+ I K + IA+ + L IE L + +I +A +++ + Sbjct: 118 KNGTIDKRKKVYAIAQ-ANGGVIFESKKLRDRELPGFIETYLKERKATIEAKASMMIVDH 176 Query: 177 LGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 +G D +EL K L S D +T + V+ I + E+ NA I ++ Sbjct: 177 VGADLSRLTSELDKVLISLPENDRRVTPEIVEKEIGVSKDFNGFELRNAIINRDVFKVNQ 236 Query: 236 LADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 + +F ++ ++ L F+ L + + + Sbjct: 237 IVKYFDSNPKAGSMYSFLPLLFSYFENLMVAYYAPQKQDPDA 278 >gi|317056555|ref|YP_004105022.1| DNA polymerase III subunit delta [Ruminococcus albus 7] gi|315448824|gb|ADU22388.1| DNA polymerase III, delta subunit [Ruminococcus albus 7] Length = 355 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 14/199 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ FYG D I + + + + +I + + + +F++ Sbjct: 21 LYYFYGHDTASIESFVRWLINKLCPKDAQFMNFHKFEGKGL--DIPSLIDACEALPMFAE 78 Query: 83 KKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVL 138 + +I I +L E K+ D L +I+ +II S + R + +K Sbjct: 79 RVVIAINDLRMEDISKEDGDSLRKIVSNLSETTTVIIYSTGVDLYKNKRNLTDKNKRFCD 138 Query: 139 AISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + Y D L I +L +I K + L G D + E+ KL Sbjct: 139 YCAKYGDVVDFAYKTASELGRSIAAALQKNGCAIDKRTAEYLAECCGCDSAYIKQEIDKL 198 Query: 192 SSYCLEDILITEQHVKDII 210 S+Y IT+ + I Sbjct: 199 SAYAKGRS-ITKDDIDTIC 216 >gi|294812569|ref|ZP_06771212.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326440978|ref|ZP_08215712.1| DNA polymerase III, delta subunit [Streptomyces clavuligerus ATCC 27064] gi|294325168|gb|EFG06811.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 332 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 100/292 (34%), Gaps = 15/292 (5%) Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII 116 L A ++Q T E+ S SLF+++K++++ N + ++ + ++ Sbjct: 53 LTADQLQ--PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDIKGYLTAPAEEITLVF 109 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILL 174 K L A K ++C P L + +S + EA Q L+ Sbjct: 110 VHPGGAKGKGLLDAARKA-GAREVAC-PKTTKPAERLTFVRAEFRTLGRSATPEACQALV 167 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 +G D + +L+ + I E V + + ++G+ A+ Sbjct: 168 DAIGSDLRELASAASQLT--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEAL 225 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 + LA+ + + Q + + K+ + + + K + + Sbjct: 226 EALRWSLATGVAPVLITSALAQGVRAIGKLSAAR--GGRPADLARELGMPP---WKIDRV 280 Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 ++ +R W + V L + + + + + ++ IA+ A Sbjct: 281 RQQMRGWTPDGVAVALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRR 332 >gi|78183656|ref|YP_376090.1| DNA polymerase III subunit delta [Synechococcus sp. CC9902] gi|78167950|gb|ABB25047.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9902] Length = 321 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 104/291 (35%), Gaps = 20/291 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D I+ ++ +L L+ E + I E + + Sbjct: 2 PIHLIWGDDAAARDRAIDGLIQSCVDPSWSSLNLSRLDGAETGQAIQAL-EEARTPPFAT 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++++L++ ++ D E + + +++ + ++ TL+K + Sbjct: 61 GERLVLLQRSPFCNGCPSELADRFEAALELIPNSSHLVLVNPSKPDGRLRTTKTLQKRIK 120 Query: 133 KFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + P + L++ + ++ +A L+ +G D +EL+K Sbjct: 121 QGLDLEQSFPLPTAWDGAGQRQLVQRTADALSLTVEPDAIDALVEAIGTDSARLESELRK 180 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS IT VK+++ + + +A + G AI D + + P+ + Sbjct: 181 LSLRT---TTITAALVKELVGGRATNAL-AVGDALLDGNAGEAIARWDALIDAGEPALRI 236 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQES 297 + + + + ++++ I + K I M++ + Sbjct: 237 VATLTGQLRGWLWVSLLEQQGERDVAVIAKAAGIGNPKRIYVMRKQLQGRQ 287 >gi|113953684|ref|YP_729315.1| DNA polymerase III subunit delta [Synechococcus sp. CC9311] gi|113881035|gb|ABI45993.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9311] Length = 326 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 103/293 (35%), Gaps = 20/293 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D + + +L L+ E E + + Sbjct: 2 PIHLLWGDDSAARDRAVAALIEEAIDPTWSSINLSRLDGSE-AGQAQQALEEARTPPFGA 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR---KIAEKF 134 +++L++ + ++ D E + + +++ + K + LR + ++ Sbjct: 61 GMRVVLLQRSPFCNACPSELADRFEAALELIPDSTQLVLTNPA-KPDGRLRTTKALQKRV 119 Query: 135 TSVLA------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 LA + D L+E + + EA L+ +G D EL Sbjct: 120 KQGLASEQKFQLPAIWDGAGQ-RQLVERTAAGLNVDMEAEAVSALVDAIGNDSARLTMEL 178 Query: 189 QKLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 QKL+ + I+ + V+ +I + + +A ++G AI L D + + P Sbjct: 179 QKLALHAESHGHKRISAEAVQTLIEGQATSAL-AVGDALLEGDAGGAIGLLDALIDAGEP 237 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 + ++ + + + ++++ I + P + ++++ L+ Sbjct: 238 ALRIVATLTGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQ 289 >gi|300858995|ref|YP_003783978.1| DNA polymerase III subunit delta [Corynebacterium pseudotuberculosis FRC41] gi|300686449|gb|ADK29371.1| DNA polymerase III delta subunit [Corynebacterium pseudotuberculosis FRC41] gi|302331246|gb|ADL21440.1| DNA polymerase III delta subunit [Corynebacterium pseudotuberculosis 1002] Length = 320 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 103/292 (35%), Gaps = 18/292 (6%) Query: 22 FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V + G D+ L E + +I D ++ L A E+ + S + + S SLF Sbjct: 3 PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 58 Query: 81 SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +II++ + ++ L + ++II+ S ++ T+ K + + Sbjct: 59 GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHV 118 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 A P + + + + + LL +G + + + +L + Sbjct: 119 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 173 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+D + ++ + G+ A+ A L + AL K Sbjct: 174 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 233 Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309 + +++ + I + ++ + K + + WN + + + Sbjct: 234 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 280 >gi|325528573|gb|EGD05676.1| DNA polymerase III subunit delta [Burkholderia sp. TJI49] Length = 218 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 86/219 (39%), Gaps = 12/219 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + L E ++ + F+ ++ +E + S + SLF + Sbjct: 4 LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 60 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 +++I I + K+ D L+ + + ++++ + ++ +A Sbjct: 61 RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFIALSNGGVA 120 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ + A Q + + G+ +A+ E+QKL Sbjct: 121 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 179 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 ++ + V D + + + ++ A + G Sbjct: 180 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARL 218 >gi|171463052|ref|YP_001797165.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192590|gb|ACB43551.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 353 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 114/327 (34%), Gaps = 23/327 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M +++ + KS +++F G + L+ E ++Q + F+ + Sbjct: 1 MVKVDALQAHLKSLSAGGSMLPLYVFSGDEPLLMMEAMDQLRAAAKKQN---FTEREVLL 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIK--------NIC 110 E + ST + + SLF K+ + I + D L++ + + Sbjct: 58 QERGFDWSTLLSAGQTMSLFGDKRWVELRIPTGKPGRDGADTLKQFAAQIASQSSGADGP 117 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLI--GQKSISK 167 + ++ I + + +AI ++ HL + I L + Sbjct: 118 DTVVCIVLPRLDGKTKTSAWFSALDNAGMAIQIDSLDRSHLPNWIAGRLKRQDQEVEAGP 177 Query: 168 E---AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 E + + + G+ IA+ E+ KL ++E+ ++ I + E+ A Sbjct: 178 EGQRTLEFIADQVEGNLIAAHQEILKLGL-LYPVGKLSEEQIRSSILKVARYNVFELTEA 236 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 + G + + D P +L ++ ++L K+ + S + +++ Sbjct: 237 MLAGDLARLNRMLDGLKGEGEPLVLILWSVTEELRILSKLKAASDA-GESVQNLMRANR- 294 Query: 285 NIIPMKRNILQESLRIWNKNLVRETLH 311 I K + +LR +R + Sbjct: 295 -IWGNKERLYPAALRRVQPLKLRRAMQ 320 >gi|260578285|ref|ZP_05846201.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium ATCC 43734] gi|258603587|gb|EEW16848.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium ATCC 43734] Length = 327 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 101/296 (34%), Gaps = 13/296 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G D L DP V + E+ S SLF+ Sbjct: 9 PINLIVGGDDFLAERRRQGIVNQARAASGDPNLPVEMRKASELSAPE--LAELLSPSLFA 66 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + +I+++ + K + L E IK+ + +++I + K N K+ + + + A+ Sbjct: 67 EDRIVVVTGVEDTGKEIVGLLEQAIKDPADGVVLIIVHTGKGRNK--KLVDSWPKLGAVV 124 Query: 142 CYPDN--KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + I++ +++E ++LL +G D + + +L D Sbjct: 125 FQAGALKGREQLAFIDQEFRSQGARVTREVCELLLDVVGSDLRQLASAISQLI--ADTDG 182 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + VK + E+ + I G + A+ LA L + L Sbjct: 183 HVDAAAVKRYYQGKAEVSGFEVADYAIAGNVRAAVALARRALQLGVAPVLLASALSS--- 239 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + I + NI+ + + + P K + + R W ++ + + Sbjct: 240 GIADIAKVAGAGNINSRR--DAAKFGMAPWKLDKTIRTARRWTTPMIAQAVQITAE 293 >gi|121596201|ref|YP_988097.1| DNA polymerase III subunit delta [Acidovorax sp. JS42] gi|120608281|gb|ABM44021.1| DNA polymerase III, delta subunit [Acidovorax sp. JS42] Length = 348 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 95/301 (31%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E ++ + + S + + S S SLF Sbjct: 17 RPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSFTVAGAHF--DWSGVLAAGGSLSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I+ I + K L+++ N + ++ + K Sbjct: 75 ADKQIVEIRIPSGKPGKDGAAALQQMAAAAPGNDSTLTVVVLPRLDKATRTGAWFAALEA 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQK 190 + P + L I + L + + + Q + G+ +A+ E+QK Sbjct: 135 HGATVQIDPVERAQLPGWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ + +T V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPEGELTWAQVEAAVLNVARYDVFKLSEAVLSGQVARVQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L+++ + + + K + + L + + L Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMALRENR---VWGAKERLFERLLPQASDAALARLL 310 Query: 311 H 311 Sbjct: 311 Q 311 >gi|110637941|ref|YP_678148.1| hypothetical protein CHU_1537 [Cytophaga hutchinsonii ATCC 33406] gi|110280622|gb|ABG58808.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 344 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 98/269 (36%), Gaps = 14/269 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I + + + N F+ +L + N+ST +FS Sbjct: 22 PVYFLQGEEPYFIDLISSYIENNCLPESERGFNQTILYGKDT--NVSTILQNARKYPMFS 79 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKF 134 ++++++++ K + ++N I++ ++ + K +K+ Sbjct: 80 ERQVVMVKEAQDVSDLTKDSTEKFLMAYLENPLPTTILVFCHKYKKLDARKKITKHLQKY 139 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + DN L + I I +A +L ++G D NE+ KL Sbjct: 140 SVFVESAKLYDN--KLPEWINGYFREKNYRIDPKAVVLLAESIGTDLSRMANEIDKLLIN 197 Query: 195 CLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALL 251 + ITE ++ + + + E+ A I A + + F ++ P +L Sbjct: 198 VKDPAITITEDLIEKYVGVSKEYNVFELQKAIGVRDIIKANKIVNHFESNPKANPIVMVL 257 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + + IH + S S K++ Sbjct: 258 SSLFTYYLKILAIHAATDKSEASLAKVVG 286 >gi|304382311|ref|ZP_07364816.1| DNA-directed DNA polymerase III delta subunit [Prevotella marshii DSM 16973] gi|304336550|gb|EFM02781.1| DNA-directed DNA polymerase III delta subunit [Prevotella marshii DSM 16973] Length = 342 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 93/251 (37%), Gaps = 10/251 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I L + ++I F+ V+ +I + + + S Sbjct: 24 PIYLLMGEESFYIDRLADYMAEHILQPDEQDFNQSVVFGSDITA--AQLADMARRYPMMS 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++I+++ K V D +E+ + + + I+++ K+ I + + E + Sbjct: 82 EYQVIIVKEAQNIKNV-DAIEKYLDNPVRSTILVLCHKNGIIDRRKKILAKIEA--VGVV 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-D 198 L IE L I ++ QI+ ++G D +EL K+ E + Sbjct: 139 FESKKKRDYELPAFIEGYLKTKGVGIDNKSVQIIADHIGADLHRLTSELDKVILSLPESE 198 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256 IT V+ I + E+ NA + I+ A + ++F + L Sbjct: 199 KRITPDVVERQIGVSKDFNSFELRNAIVSKDIFKANQIVNYFDKNPKAGSLYSFLPLLFG 258 Query: 257 KFQLLEKIHII 267 FQ L + Sbjct: 259 FFQNLMTAYYA 269 >gi|167586116|ref|ZP_02378504.1| DNA polymerase III subunit delta [Burkholderia ubonensis Bu] Length = 368 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L E ++ + F+ ++ +E + S + SLF + Sbjct: 19 LYTVFGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSLLLGATQAMSLFGE 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139 ++I I + K+ D L+ + N + ++++ + + +A Sbjct: 76 HQLIELRIPSGKPGKEGADALKALAAANNPDALVLVTLPRLDAATQKSAWFTALLNGGVA 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194 + P ++ L + I + L + + ++ + A Q + + G+ +A+ E+QKL Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + V D + + + ++ A + G + D ++ Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +++ + L +I + ++++ + + ++ +L + + + L Sbjct: 255 VEELRTLLRIKRGV-AAGKPLATLLRENR--VWGPRERLVGPALGRVTEAALEKAL 307 >gi|222112429|ref|YP_002554693.1| DNA polymerase iii subunit delta [Acidovorax ebreus TPSY] gi|221731873|gb|ACM34693.1| DNA polymerase III, delta subunit [Acidovorax ebreus TPSY] Length = 348 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 95/301 (31%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E ++ + + S + + S S SLF Sbjct: 17 RPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSFTVAGAHF--DWSGVLAAGGSLSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I+ I + K L+++ N + ++ + K Sbjct: 75 ADKQIVEIRIPSGKPGKDGAAALQQMAAAAPGNDSTLTVVVLPRLDKATRTGAWFAALEA 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQK 190 + P + L I + L + + + Q + G+ +A+ E+QK Sbjct: 135 HGATVQIDPVERAQLPAWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ + +T V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPEGELTWTQVEAAVLNVARYDVFKLSEAVLSGQVARVQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L+++ + + + K + + L + + L Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMALRENR---VWGAKERLFERLLPQASDAALARLL 310 Query: 311 H 311 Sbjct: 311 Q 311 >gi|160942606|ref|ZP_02089851.1| hypothetical protein FAEPRAM212_00080 [Faecalibacterium prausnitzii M21/2] gi|158446085|gb|EDP23088.1| hypothetical protein FAEPRAM212_00080 [Faecalibacterium prausnitzii M21/2] gi|295103510|emb|CBL01054.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii SL3/3] Length = 342 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 41/332 (12%), Positives = 114/332 (34%), Gaps = 25/332 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ FY S++ L+ + + + +S + +++ A E+++ + S F Sbjct: 16 PVYYFYSSERYLVRQAVAAAVRVLSADSDEDATILDGAAPELEQ----LIMAAGTISFFG 71 Query: 82 KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133 ++++++ + L+E+ + ++ N + ++ + +IK +K+ Sbjct: 72 TRRVVVLPEIDPAAYGSKDLDELCSTLSSLENAVAVLGSVFPLERGKIKLGKQAQKL--- 128 Query: 134 FTSVLAISCYPDNKI-----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 AI Y + L +L+ E ++ A LL G D NE+ Sbjct: 129 QAQCKAIG-YTEELAKPRPFELKNLMMERAKAQGATLPDGAATALLERCGEDPFLLENEV 187 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL + ++ V ++ + + E+I A L + Sbjct: 188 DKLCALS-GYQTVSASMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPI 246 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVR 307 A+ + + L ++ + ++ + + K + + + + + Sbjct: 247 AITAAMIGSYVDLYRVKLGA-AKRKNYSAVHKDFGYKGSDYRLKRSAETA-AHYTLPQLE 304 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 L + + + + ++ + +A Sbjct: 305 ACLQVLLELDQSLKSQPVAAQTLLETALCRLA 336 >gi|145636943|ref|ZP_01792607.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH] gi|145269801|gb|EDK09740.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH] Length = 344 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 116/318 (36%), Gaps = 26/318 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133 K+I+ + + L+E+I + ++I++ L K EK Sbjct: 76 SKQILSLNLPENFTALFQKNLQELISVLHKDVLLILQV------AKLTKAIEKQTWFIIL 129 Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + I+C +L ++ EA Q L + + +A + LQ Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L D + V ++ + + + I+A + GK A + A + L Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248 Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305 L ++ L ++ I + ++I + ++ I +R + +++ Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308 Query: 306 VRETLHKIDHRIHLARKK 323 + E + ++ + LA+++ Sbjct: 309 LYEIIQELANIERLAKQE 326 >gi|167763092|ref|ZP_02435219.1| hypothetical protein BACSTE_01459 [Bacteroides stercoris ATCC 43183] gi|167699432|gb|EDS16011.1| hypothetical protein BACSTE_01459 [Bacteroides stercoris ATCC 43183] Length = 339 Score = 70.0 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ G + I + + N+ F+L V+ ++ +++ N + Sbjct: 21 RPIYYLMGEEPYYIDLISDYITDNVLNETEKEFNLTVVYGADV--DVAAIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + K L AE S + Sbjct: 79 SEHQVVVVKEAQNIRNI-EELSYYLQKPLLSTILVICHKHGVLDKRKKL--AAEIEKSGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197 + L I + + +A +L +G D EL+KL Sbjct: 136 LFESRKVKESQLPVFITSYMKRKGIDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ + A + +F + P L Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDVLKANRIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E S + R L ++R++N + + +I + Sbjct: 256 GFFSNLMLAYYAPEKSEQGIAAFLGLKSP---WQSREYL-NAMRMYNGIKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338 ++ L + ++ + + I Sbjct: 312 TDAKSKGVGNPSLNDSDLLRELVFKI 337 >gi|262362598|gb|ACY59319.1| DNA polymerase III, delta subunit [Yersinia pestis D106004] Length = 272 Score = 69.6 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 72/194 (37%), Gaps = 4/194 (2%) Query: 79 LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135 +F+ ++ +L+ + + + L ++ + ++I+++N++ K + Sbjct: 1 MFASRQTLLLSFPDSGLTAPISEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSK 60 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + +SC + L + ++ A Q+L G+ +A L++LS Sbjct: 61 NGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYCYEGNLLALSQALERLSL-L 119 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D +T V+ + D ++A + GK A + LL Sbjct: 120 YPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHILQQLQQEDSEPVILLRTVQ 179 Query: 256 QKFQLLEKIHIIKE 269 ++ LL + E Sbjct: 180 RELLLLLALKRQME 193 >gi|325283436|ref|YP_004255977.1| DNA polymerase III, delta subunit [Deinococcus proteolyticus MRP] gi|324315245|gb|ADY26360.1| DNA polymerase III, delta subunit [Deinococcus proteolyticus MRP] Length = 306 Score = 69.6 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 93/280 (33%), Gaps = 14/280 (5%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI 113 L L+ E+ + + + SLF +I+ +LS K + L E++ + Sbjct: 33 ELTRLSGEEVT--PESL-EPLLAPSLFGGGGVIV--DLSGVKPGKE-LMELLAGAQAPAL 86 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 ++ + T K+ E ++ P ++ + + K+A L Sbjct: 87 VL----DTTAPPTRAKVYEAHGELIRSP-NPQRPGDVLGWLVPYAKKQGLKLEKDAASYL 141 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 G D EL KL + + + V++++ +++A G+ A Sbjct: 142 ADVFGTDLTGIAGELNKLK-FLPAGTRLDAETVQEVVGRERAGDSFAMLDAATAGRPALA 200 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEK-IHIIKECSNISFEKIIQKTEKNIIPMKRN 292 + L LL + ++ L+ + + ++ + E + Sbjct: 201 LEQLGRLLRGGEDPFRLLGAVVWQYSLIARCVGLLADSGGQVSEGAAASRLGAKPYPVKK 260 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIF 332 L + R ++ +R L +I ++ + + Sbjct: 261 ALAVA-RRLDEAKIRRHLARIAGADLDLKRGHDPARTLQR 299 >gi|332529575|ref|ZP_08405531.1| DNA polymerase III subunit delta [Hylemonella gracilis ATCC 19624] gi|332040925|gb|EGI77295.1| DNA polymerase III subunit delta [Hylemonella gracilis ATCC 19624] Length = 348 Score = 69.6 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 107/302 (35%), Gaps = 22/302 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L E + + S+ + + S S SLF++ Sbjct: 19 LYTVHGDEALLQQEAADSIRAAARAEGFSERSVHTVAGAHF--DWSEVLAAGGSLSLFAQ 76 Query: 83 KKIILIENLST--EKKVLDCLEEIIIKNICN----HIIIIKSNEI--KKNNTLRKIAEKF 134 ++++ I S K+ L++I N ++++ ++ KK + Sbjct: 77 RQMVEIRVPSGKPGKEGSAALQQIAEAAQGNDSTLTLVLLPRLDMQTKKGAWFGAL---E 133 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189 + + + P + L I + L + + + + Q + G+ +A+ E+ Sbjct: 134 SFGVTVQVDPVERRALPAWIAQRLSAQGQRVEEGEAGQHSLQFFADRVEGNLLAAHQEIS 193 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL+ ++ + ++ + + + ++ A + G+ A + D A Sbjct: 194 KLAL-LYPAGTLSFEQIESAVLNVARYDVFKLAEAVLAGQSARAQKMLDGLQAEGEAEVL 252 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + L+++ + ++ + K + + +L ++ + + Sbjct: 253 AHYAIAEDIRGLKRVKDALGQGRPLPMALREQR---VWGAKEKLYERALPRLSETQLNDL 309 Query: 310 LH 311 LH Sbjct: 310 LH 311 >gi|15806263|ref|NP_294968.1| hypothetical protein DR_1244 [Deinococcus radiodurans R1] gi|6458988|gb|AAF10815.1|AE001972_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 300 Score = 69.6 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 16/260 (6%) Query: 78 SLFSKKKIIL-IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 SLF +++ E L +K L E++ ++ ++ + +K E S Sbjct: 51 SLFGDGGVVVDFEGLKPDK----ALLELLSSAPVTVAVLDEAPPATRLKLYQKAGEVIPS 106 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 P + + + ++A L G D EL KL Sbjct: 107 AA-----PSKPGDVTGWVVTRAKKMGLRLERDAASYLAEVFGADLAGIAGELNKLELL-- 159 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + V+ I+ ++ A G+ A++ L S LL + Sbjct: 160 -GGALNRERVQGIVGRDPPGDSFAMLGAATAGRPGEAVLQLRRLLGSGEDPFRLLGAVVW 218 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ L+ + + + + + + + L+ + R +++ +R L I Sbjct: 219 QYSLIARTVGLLQEEGRVNDAVAAQRLGVKPFPAKKALEVA-RRLSESRIRSHLGAILDA 277 Query: 317 IHLARKKKYLEKNIIFQTIL 336 ++ L+ + + +L Sbjct: 278 DLAMKR--GLDPQVALERLL 295 >gi|88802785|ref|ZP_01118312.1| hypothetical protein PI23P_09345 [Polaribacter irgensii 23-P] gi|88781643|gb|EAR12821.1| hypothetical protein PI23P_09345 [Polaribacter irgensii 23-P] Length = 333 Score = 69.6 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 97/261 (37%), Gaps = 4/261 (1%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I ++ + + N+ F+ V+ ++ I + + Sbjct: 18 PIYFLMGEESYYIDKISDYIEANVLGEAEKGFNQQVMYGRDVT--IEDIVAAAKRYPMMA 75 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++++I+ + ++ L ++++ K + + + L Sbjct: 76 ERQVLIIKEAQDLSRNIEKLISYAENPQPTTVLVLNYKYKKLDKRKKLHKVIAKTGLIFE 135 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + + D I ++L I +A +L+ LG D NEL KL E+ +I Sbjct: 136 SKKLYENQVSDWIRKALSAKNYKIEPKASLMLVEFLGTDLSKISNELDKLMLVLPEETII 195 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259 ++ H+++ I + E+ A + +I A + +F + P + F Sbjct: 196 SDVHIEENIGISKDFNNFELRKAVGEKQIVKANRIIKYFGENPKNNPLVITISLLNGYFT 255 Query: 260 LLEKIHIIKECSNISFEKIIQ 280 L H +K+ S + + + Sbjct: 256 QLLLFHGLKDKSKNNVARTLG 276 >gi|94984852|ref|YP_604216.1| DNA polymerase III, delta subunit [Deinococcus geothermalis DSM 11300] gi|94555133|gb|ABF45047.1| DNA polymerase III, delta subunit [Deinococcus geothermalis DSM 11300] Length = 312 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 5/201 (2%) Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 P + + + + ++A L G D EL KL+ D +T Sbjct: 109 PQKTSDVAGWVAQRARKTGLKLDRDAALYLAEVFGSDLTGIAGELNKLALL---DPPLTA 165 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+ ++ ++ A G+ A+ LA+ LL + ++ L+ + Sbjct: 166 DLVRRVVGREPPGDTFALLGAATGGRPAEAVTQLRRLLATGEDPFKLLGAVVWQYNLVAR 225 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + + E++ + + L+ + R N+ +R L +I ++ Sbjct: 226 CVALLQEEGRVTEQVAAQRLGVKPYPAKKALEVA-RRLNEPKIRAHLGRILDADLGMKRG 284 Query: 324 KYLEKNIIFQTILYIAQTACK 344 + + I+ ++ Sbjct: 285 LDPATTL-ERLIVQLSVEDRC 304 >gi|294142173|ref|YP_003558151.1| DNA polymerase III subunit delta [Shewanella violacea DSS12] gi|293328642|dbj|BAJ03373.1| DNA polymerase III, delta subunit [Shewanella violacea DSS12] Length = 347 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 108/314 (34%), Gaps = 12/314 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 KNL ++ +G D L +++ S + + L E N + ++ Sbjct: 11 KNLSPLKQCYLIFGDDPWLCETSRSQIYQQAKSQGFEEKIQLSQ----ESGFNWNELVDQ 66 Query: 74 INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLFS +++I + + + ++ + ++II ++ T K Sbjct: 67 WQAMSLFSSRRVIELTLPQAKPGAEGGTIFQSLMQMANPDVLLIITGPKLAAEQTKSKWF 126 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + + C ++ + +++++AK +L + G+ +A+ ++ + Sbjct: 127 KTLDSQGIYVPCMTPEGSQFQRWLDNRIQHFALNLTRDAKDMLFSLYEGNLLAA-DQSLQ 185 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + I + D + ++ +A + A + + + Sbjct: 186 LLQLLSPNEQIDSPELSRYFEDQSRFSVFQLTDAMLNNSQDKAQHMLSQLKGEGVAMPII 245 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L G ++ +L ++ E + + K I ++ +L + + L Sbjct: 246 LWGIFKELAILLQLKSALEI-REPLQPLWGKLR--IWDKRKPFYLAALNRLSLLQIETLL 302 Query: 311 HKIDHRIHLARKKK 324 +++ Sbjct: 303 ASASDIELKLKQQG 316 >gi|123969388|ref|YP_001010246.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. AS9601] gi|123199498|gb|ABM71139.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. AS9601] Length = 333 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 115/298 (38%), Gaps = 32/298 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D I + ++ LN + K ++ ++E+ + Sbjct: 2 PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DKQVNKAFDEVLTPPFGD 60 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 +I+ ++N + + + E+I N I+++ + +K L+K+ Sbjct: 61 GYRIVTLKNNPIFTAKNEDLRTKFEKIHDNIPQNTYFILQNTKKPDSRLKSTKFLQKLIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK S+ I Y K L D E I K A ++++ ++G D N Sbjct: 121 DNLAKEKSFSLPEIWDYEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176 Query: 187 ELQKLSSY----CLE-DILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 EL K +Y + + + + VK I D I +II+ +Q I +++ ++ Sbjct: 177 ELAKAKTYLSALSGDSNSQLFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINESLIEINY 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293 L P+ L G + + ++ I + N + EKI K I ++R + Sbjct: 236 SLQKGEPALKLNAGLISQIRIHTIIKLAVNSGNDNAEKICNLAGISNPKRIFFIRRKV 293 >gi|299529415|ref|ZP_07042853.1| DNA polymerase III subunit delta [Comamonas testosteroni S44] gi|298722664|gb|EFI63583.1| DNA polymerase III subunit delta [Comamonas testosteroni S44] Length = 348 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%) Query: 76 STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131 S SLF+ K+I I I + K L+++ N + +I + K Sbjct: 70 SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATRTGAWF 129 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185 + ++I P + L I + L + + ++ + Q + G+ +A+ Sbjct: 130 GALDGNGVSIQIDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E+QKL+ + ++ V+ + + + ++ A + G++ ++ + D A Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + ++++ + RIW Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290 Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329 + ++ R+ AR + L+ Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313 >gi|264680696|ref|YP_003280606.1| DNA polymerase III subunit delta [Comamonas testosteroni CNB-2] gi|262211212|gb|ACY35310.1| DNA polymerase III, delta subunit [Comamonas testosteroni CNB-2] Length = 348 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%) Query: 76 STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131 S SLF+ K+I I I + K L+++ N + +I + K Sbjct: 70 SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATRTGAWF 129 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185 + ++I P + L I + L + + ++ + Q + G+ +A+ Sbjct: 130 GALDGNGVSIQIDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E+QKL+ + ++ V+ + + + ++ A + G++ ++ + D A Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + ++++ + RIW Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290 Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329 + ++ R+ AR + L+ Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313 >gi|184155087|ref|YP_001843427.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus fermentum IFO 3956] gi|227514787|ref|ZP_03944836.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus fermentum ATCC 14931] gi|260663631|ref|ZP_05864520.1| DNA polymerase III, delta subunit [Lactobacillus fermentum 28-3-CHN] gi|183226431|dbj|BAG26947.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus fermentum IFO 3956] gi|227086835|gb|EEI22147.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus fermentum ATCC 14931] gi|260551857|gb|EEX24972.1| DNA polymerase III, delta subunit [Lactobacillus fermentum 28-3-CHN] gi|299783044|gb|ADJ41042.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus fermentum CECT 5716] Length = 342 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 28/261 (10%), Positives = 96/261 (36%), Gaps = 19/261 (7%) Query: 78 SLFSKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNT 126 F +++++++ + K+ + L E + ++++ + ++ Sbjct: 70 PFFGERRLVILNKPAFLTGGTSRGALKQDGEVLREYLKHPQPTTVLVLLAPYEKLDGRKG 129 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + K +K ++ + D L+E+ + + A L+ D Sbjct: 130 VVKDLKKLAVEVSAAP-LDEPRA-RRLVEQRFQADGYQLGRGAIDELVRRTNADYGKMMA 187 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + + +D +T+ V ++ + + +++ A + + A+ L L S+ Sbjct: 188 AVPVIELAVYQDKRVTDAAVAGLVPQSLDENVFDLVQAVLNREQVEAVRLYRELLESQQA 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + + +F+LL +I + +S + + + + P + + ++ R ++ + + Sbjct: 248 PLQINAILVSQFRLLLQIK-VLSNRGLSQGTLAGQLK--VHPYRVKLGLQTARRFSMDDL 304 Query: 307 RET---LHKIDHRIHLARKKK 324 L + + + ++ Sbjct: 305 SHAYLGLIRCERALKSTQQDP 325 >gi|148380920|ref|YP_001255461.1| DNA polymerase III, delta subunit [Clostridium botulinum A str. ATCC 3502] gi|153933191|ref|YP_001385228.1| DNA polymerase III subunit delta [Clostridium botulinum A str. ATCC 19397] gi|153934875|ref|YP_001388697.1| DNA polymerase III subunit delta [Clostridium botulinum A str. Hall] gi|148290404|emb|CAL84531.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929235|gb|ABS34735.1| DNA polymerase III, delta subunit [Clostridium botulinum A str. ATCC 19397] gi|152930789|gb|ABS36288.1| DNA polymerase III, delta subunit [Clostridium botulinum A str. Hall] Length = 343 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + V + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKRIIDSNINNDFKDLNYVQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYH 122 Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 K + + KI + I+ +L +E+ K I+K + + + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182 Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + ++ NE++KL +Y + + I ++H+K++ I ++IN + K AI + Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + +L ++F+ L + I E + E + ++ + I P ++L Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298 Query: 297 SLRIWNKNLVRETLH 311 + + + +++ Sbjct: 299 QSKKFTLKQIEKSIE 313 >gi|302560705|ref|ZP_07313047.1| DNA polymerase III, delta subunit [Streptomyces griseoflavus Tu4000] gi|302478323|gb|EFL41416.1| DNA polymerase III, delta subunit [Streptomyces griseoflavus Tu4000] Length = 340 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 86/252 (34%), Gaps = 11/252 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ + + ++ + ++++ + K Sbjct: 66 PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGSPAEEITLVLLHAGGAKGK 124 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q+L+ +G D Sbjct: 125 GLLDAARKAGAREVACPKMTKPADRLAF-VRAEFRTTGRSATPEACQVLVDAIGSDLREL 183 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L + I E V + + ++G+ A+ + L++ Sbjct: 184 ASAVTQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + I + + ++ P K + +++ +R W + Sbjct: 242 VAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 296 Query: 305 LVRETLHKIDHR 316 V L + Sbjct: 297 GVAVALRAVAEA 308 >gi|238855240|ref|ZP_04645559.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 269-3] gi|260664600|ref|ZP_05865452.1| DNA polymerase III, delta subunit [Lactobacillus jensenii SJ-7A-US] gi|282932467|ref|ZP_06337892.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1] gi|313471938|ref|ZP_07812430.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 1153] gi|238832132|gb|EEQ24450.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 269-3] gi|239529134|gb|EEQ68135.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 1153] gi|260561665|gb|EEX27637.1| DNA polymerase III, delta subunit [Lactobacillus jensenii SJ-7A-US] gi|281303416|gb|EFA95593.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1] Length = 328 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 122/314 (38%), Gaps = 25/314 (7%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN + + + YG D L LI + N F + L ++ + + + Sbjct: 7 KNSNVQNKNLLIYGEDAFLNDYLIRDYLNNS------EFKGLDLQRIDCENDGLDELLAS 60 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122 + SLFS++KII ++N + KK+ + ++ + + I+I+++N + Sbjct: 61 LTEASLFSQQKIIWVKNPIFLTGKSPKKLQANIAKLEKVFANLTLSDDIVIMQANYANLD 120 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K + K++ + + + P + +I+ + SI++ +LL Sbjct: 121 KRKKITKLSLSAFNSVEVQFKPYE---VSGVIKAIIKDEGYSIAQNTLHLLLERSDQVMD 177 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 + + KL ++ IT + V++ + + I EI+++ + ++ + L Sbjct: 178 TALSNYLKLKLIADDNKKITLESVQNNVDLSLAQNIFEILSSAFKKNYQESLERLEDQLR 237 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE-SLRIW 301 +L F + +++ I+ S I ++ I P + + ++ + + Sbjct: 238 EGQNPVRILSVFENQLEVILSAKILLARKR-SEMDIGKELG--IHPYRVKLAKQTQVSVS 294 Query: 302 NKNLVRETLHKIDH 315 + K+D Sbjct: 295 KLKRLLLEAIKLDQ 308 >gi|325679259|ref|ZP_08158846.1| DNA polymerase III, delta subunit [Ruminococcus albus 8] gi|324109045|gb|EGC03274.1| DNA polymerase III, delta subunit [Ruminococcus albus 8] Length = 354 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ FYG D + + + + I + + +F++ Sbjct: 21 LYYFYGHDAAAVESFTRWLINKLCPKDAQFMNFHKFEGKGLS--IPALLDACEALPMFAE 78 Query: 83 KKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVL 138 + ++ I +L E K+ D L +I+ K +II + + R + +K Sbjct: 79 RVVVAINDLRMEDLPKEDGDALRKILSKLSDTTTVIIYATGVDLYKNKRSLTDKNKRFCD 138 Query: 139 AISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + Y + L I +L I K + L G D + E++KL Sbjct: 139 HCAKYGEVCDFQYKTANELGKSIAAALQKKGCGIDKRTAEYLAELCGCDSAYIKQEIEKL 198 Query: 192 SSYCLEDILITEQHVKDII 210 S++ +T + + + Sbjct: 199 SAFANG-RAVTREDIDALC 216 >gi|269837243|ref|YP_003319471.1| DNA polymerase III, delta subunit [Sphaerobacter thermophilus DSM 20745] gi|269786506|gb|ACZ38649.1| DNA polymerase III, delta subunit [Sphaerobacter thermophilus DSM 20745] Length = 340 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 31/260 (11%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + I +G+++ I E + + HDP + +++ + S F Sbjct: 9 ILILHGTNRLAIDERVQHLRA-----EHDPAGITTTVVERAAEHLGELRSACLSPGFFGA 63 Query: 83 KKIILIENL----------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 ++++ +L T ++ L ++ ++I+ +EIK + R++ Sbjct: 64 TRLVIARDLLVGGGGGRGRRTSADRVEALA-LLASVPETTVLIVAESEIKPADE-RELRS 121 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL--------------G 178 K L++ + +I E LL L Sbjct: 122 KVPGATIERHDVPRGRDLVEWVRTRARRYDATIEAETAAQLLEALFPTSWRAVARRDDVP 181 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D E+ KL++ IT V ++ D I + +A + G + A+ + Sbjct: 182 PDLYRLDAEVAKLATAAGPSQEITRDLVGALVPDAEATNIWGLTDAIVAGDVAGAVREVE 241 Query: 239 FFLASKMPSHALLHGFLQKF 258 LA+ P+ LL +F Sbjct: 242 RALATGTPAEMLLGQLASQF 261 >gi|212636653|ref|YP_002313178.1| DNA polymerase III subunit delta [Shewanella piezotolerans WP3] gi|212558137|gb|ACJ30591.1| DNA polymerase III, delta [Shewanella piezotolerans WP3] Length = 343 Score = 69.6 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 106/289 (36%), Gaps = 10/289 (3%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + +G D L + + D + L E + + ++ + SLFS ++ Sbjct: 20 LIFGDDPWLCDQSRTALHQIAKQQGFD--EKIQLT-QETGFSWNELIDQWQAMSLFSSRR 76 Query: 85 IILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAIS 141 II + + + ++ + + ++I+ ++ T K + + + Sbjct: 77 IIELTLPTAKPGTEGSAMFQSLMQMDNPDVLLILTGPKLALEQTKSKWFKSLDAKGVYVP 136 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 C ++ + ++S++++++L A G+ +A+ LQ L I Sbjct: 137 CITPEGAQFQRWLDGRINHYSLTLSRDSREMLFALYEGNLLAADQALQLLQLLS-PTAPI 195 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + + D + ++ +A + + A + + + +L ++ +L Sbjct: 196 EPEQLSQYFEDQSRFSVFQLTDAMLSNQQDKAQHILSQLKSEGVAMPIILWSLFKELGVL 255 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 ++ E + + + + K I ++ + Q++++ + V L Sbjct: 256 LQLKT-AEVNGQALQGLWSKLR--IWDKRKPLYQQAIKRLSLAQVETLL 301 >gi|320354853|ref|YP_004196192.1| DNA polymerase III delta [Desulfobulbus propionicus DSM 2032] gi|320123355|gb|ADW18901.1| DNA polymerase III delta [Desulfobulbus propionicus DSM 2032] Length = 456 Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 70/191 (36%), Gaps = 14/191 (7%) Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRK-----------IAEKFTSVLAISCYPDNKIHLM 151 + ++ +I+ + E+ K L K E A + K L Sbjct: 187 ALAAGLPASNFLILLAEEVDKRKKLFKQLKDGQTVVDLSVESGAGAKA---QKEQKAVLH 243 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 +L+ ++L K+++ +L+ +G +A EL+K+ +Y E I + ++ Sbjct: 244 ELVRKTLAEQGKTLAPGLIDLLVERVGFHPVALVMELRKVMAYVGERRQIDHADIDLLVG 303 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T + E+ A G +++ D + + A++ + L + E Sbjct: 304 RTRQEALFELTTALAAGNREQTLVIGDRLQENGIHPLAVVATLRNFVRNLLLCRALLEQP 363 Query: 272 NISFEKIIQKT 282 +I F+ + Sbjct: 364 DIRFQPTMSAA 374 >gi|319956132|ref|YP_004167395.1| DNA polymerase iii delta [Nitratifractor salsuginis DSM 16511] gi|319418536|gb|ADV45646.1| DNA polymerase III delta [Nitratifractor salsuginis DSM 16511] Length = 325 Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 116/335 (34%), Gaps = 20/335 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q+ + L + YG + LI E I +++K + S +L + + Sbjct: 5 EFEQRLKEGLP---NAVLLYGDNAYLIEETIERYRKELDA------SETLLAMYHDEYDF 55 Query: 68 STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + ++ +SLF +LI + KK LD L + KN N+ + E + Sbjct: 56 ERARSYLSQSSLFGGTNFLLIRRDKKIPKKELDTLIALTQKNPDNYFLFDFRGEARDAKG 115 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 ++ + + + + N + ++ I A LL L + + Sbjct: 116 MQSSFPEKKGGIWVRFFEPNPREGVAILRRKAEALGLQIDDYALNHLLTLLENNLALAAK 175 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL+KLS ++ + + ++ + L +E+++ + L Sbjct: 176 ELEKLSIL---QCPVSTKEIDRLVYSSAPLAVEKLLVDLF--NKKPIDETLERLLDLGAN 230 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLR--IWNK 303 + +L + H ++ K I + ++ L ++ W K Sbjct: 231 EYEILRATQFFVHQIFLFHAYIRIHGVADSKAILGYKLPKHVEQQKAALSARIKPATWIK 290 Query: 304 --NLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + + ++ R+ + I Q++L Sbjct: 291 IHDHLLSSELQLKKSRSDYRETELYGVLIRLQSLL 325 >gi|168179399|ref|ZP_02614063.1| DNA polymerase III, delta subunit [Clostridium botulinum NCTC 2916] gi|182669577|gb|EDT81553.1| DNA polymerase III, delta subunit [Clostridium botulinum NCTC 2916] Length = 343 Score = 69.2 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + V + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKRIIDSNINNDFKDLNYVQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 K + + KI + I+ +L +E+ K I+K + + + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182 Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + ++ NE++KL +Y + + I ++H+K++ I ++IN + K AI + Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + +L ++F+ L + I E + E + ++ + I P ++L Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298 Query: 297 SLRIWNKNLVRETLH 311 + + + +++ Sbjct: 299 QSKKFTLKQIEKSIE 313 >gi|239931347|ref|ZP_04688300.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 329 Score = 69.2 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 87/252 (34%), Gaps = 11/252 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ + + ++ + ++++ + K Sbjct: 55 PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 113 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRTTGRSATPEACQALVDAIGSDLREL 172 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L + I E V + + ++G+ A+ + L++ Sbjct: 173 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 230 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + + ++ P K + +++ +R W + Sbjct: 231 VAPVLITSALAQGVRAIGKLQSAR---GGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 285 Query: 305 LVRETLHKIDHR 316 V L + Sbjct: 286 GVAVALRAVAEA 297 >gi|38234340|ref|NP_940107.1| hypothetical protein DIP1769 [Corynebacterium diphtheriae NCTC 13129] gi|38200603|emb|CAE50299.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 324 Score = 69.2 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 28/297 (9%) Query: 22 FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V + G D+ L E I+ T + L A E+ + ++ S SLF Sbjct: 7 PVHLVVGDDEFL-AERARHSIIAAINKTIGSDVPVTTLRAGEVNASE---LIQLTSPSLF 62 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNH--IIIIKSNE------IKKNNTLRKIAE 132 + +II++ N+ K L + + +II+ S + K + + ++ E Sbjct: 63 GEDRIIVLTNMEDAGKEPAELVLNVAVDPAPGIYLIIVHSGGGRQKALVPKLSKISQVHE 122 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + + + LL +G D + + +L Sbjct: 123 ANKL---------KPKDRVGWVTNEFKRHGVRPTPDVVHALLEGVGSDLRELASAIGQLV 173 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +T V+D + ++ + G+ A+ A L + AL Sbjct: 174 --ADNNGDVTLATVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAA 231 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 K + +++ + I K+ + + +++ + R+W N V + Sbjct: 232 ALSMKVSAIARLYSTR--GRIDSRKLAGELGMHPFVVEKTA--KVARMWTGNAVSQA 284 >gi|289548078|ref|YP_003473066.1| DNA polymerase III subunit delta [Thermocrinis albus DSM 14484] gi|289181695|gb|ADC88939.1| DNA polymerase III, delta subunit [Thermocrinis albus DSM 14484] Length = 345 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 88/258 (34%), Gaps = 32/258 (12%) Query: 41 FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK--KIILIENLSTEKKVL 98 K SL VL E+ + F N++ T+LF K +I++++N Sbjct: 28 LVKTFLEKLSRIASLRVLWGDELT--LEDFLNQLGETNLFEGKSHEIVVVKNG------- 78 Query: 99 DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD------------- 145 EE++ K +++ + +KK + + L Y Sbjct: 79 ---EEVLKKLKDPKLVLRIARNLKKKKVFFVVGKVDKRQLEKPPYQTIGEVGDVIEAKKL 135 Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N + DL++ I ++A LL + + + E+ KL+ Y IT + Sbjct: 136 NSKKVKDLVKRRFEKEGIQIDEDALNYLLEAFSYNLMMLKTEVDKLTLY---GKRITLED 192 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ + + I + + A + A++ D + + LL Sbjct: 193 VRRVCVPSGEGSIFDFLEAFFTRNVEKALVSLDTLYRYGVHPLLIQKSLANLVILLYT-- 250 Query: 266 IIKECSNISFEKIIQKTE 283 ++ ++ ++K Sbjct: 251 AVRLSGGKDMDETLRKLG 268 >gi|238021488|ref|ZP_04601914.1| hypothetical protein GCWU000324_01388 [Kingella oralis ATCC 51147] gi|237868468|gb|EEP69474.1| hypothetical protein GCWU000324_01388 [Kingella oralis ATCC 51147] Length = 336 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 106/322 (32%), Gaps = 9/322 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L E ++ + + + +S LF+ Sbjct: 19 PLYVIHGEEDLLRIEALDSI--RAVAKQRGYLNRESYTVENANFDWNEVLVNADSAGLFA 76 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I + K + L+++ + + +I ++++ T K Sbjct: 77 DLKLLEIHIPSGKVGKNGGEALQQLAENLPRDTVTLIVLPKLERAQTQAKWFAALGKHGT 136 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + L I L A + + G+ +A++ E+ KL+ + Sbjct: 137 VLEAKAVSSNALPAWINARLQQHGLEAEAAAIALFAERVEGNLLAAKQEVDKLALLFPQG 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LI+ Q ++ + + + ++ A + G + L D A LL + Sbjct: 197 HLISIQDAQESVANVARFDVFQLAAAWMGGNVRRTAHLLDALAADDEEPVLLLWAVAEDV 256 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L ++ + + + + + K+ ++ R + + L Sbjct: 257 RTLIRLSAAF-KQGKTVQAVRNELR--LWGDKQQYASQAARRLTVPRLMDALKTCAQIDR 313 Query: 319 LAR-KKKYLEKNIIFQTILYIA 339 + + + + Q ++ +A Sbjct: 314 QIKGAEAGDARAALRQLVMQLA 335 >gi|291439721|ref|ZP_06579111.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291342616|gb|EFE69572.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 337 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 87/252 (34%), Gaps = 11/252 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ + + ++ + ++++ + K Sbjct: 63 PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 121 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ +G D Sbjct: 122 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRTTGRSATPEACQALVDAIGSDLREL 180 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L + I E V + + ++G+ A+ + L++ Sbjct: 181 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + + ++ P K + +++ +R W + Sbjct: 239 VAPVLITSALAQGVRAIGKLQSAR---GGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 293 Query: 305 LVRETLHKIDHR 316 V L + Sbjct: 294 GVAVALRAVAEA 305 >gi|134095831|ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimonas arsenicoxydans] gi|133739734|emb|CAL62785.1| DNA polymerase III, delta subunit [Herminiimonas arsenicoxydans] Length = 338 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 99/294 (33%), Gaps = 14/294 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ + L E ++ ++ ++V++ S SLF Sbjct: 19 LYVITSDEHLLALEAADKIRQTARAQGFSEREVLVVDRSF---KWGELLAANQSQSLFGD 75 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSV 137 KK+I I + L++ +++ +I ++ + ++ + Sbjct: 76 KKLIELRIPTGKPGRDGGKALQDYAASLSPDNVTLITLPKLDWATQKAAWVASLQQASVF 135 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + I + L + L +S + + + G+ +A+ E+QKL+ Sbjct: 136 IDIP--LVERAQLPAWLGVRLAAQGQSADRACLDFIAERVEGNLLAAHQEIQKLAL-LYP 192 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ++ + V D + + + ++ A + G + + + +L ++ Sbjct: 193 AGPLSFEQVHDAVLNVARYDVFKLNEAMLSGDTARLVRMLEGLQGEGEALPLVLWAVAEE 252 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + L K+ ++ ++ I + +++ +LR + L Sbjct: 253 IRTLLKLKSGM-AQGRPLSQLTKEHR--IWGPRERLIEPALRRLKLATLESALQ 303 >gi|294673295|ref|YP_003573911.1| DNA polymerase III subunit delta [Prevotella ruminicola 23] gi|294473919|gb|ADE83308.1| DNA polymerase III, delta subunit [Prevotella ruminicola 23] Length = 330 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 115/306 (37%), Gaps = 14/306 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I ++ + + F+ V+ ++ N S + + + Sbjct: 11 PVYYLMGDESYYIDKIADYIADHALRPEERDFNQTVVFGSDV--NASQIADLARRYPMMA 68 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138 ++++++++ K + LE + + + ++++ + + K + + Sbjct: 69 ERQVVIVKEAQNIKN-TEALERYFAQPMASTVLVMCHKNGKVDGRKSGYVKAI--KSHGI 125 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLE 197 L IE L Q I ++ Q++ N+G D EL K + S E Sbjct: 126 LFESMKLKDRELPGFIENYLKKRQIRIDAKSVQMIAENIGADLSRLTGELDKVIISLPEE 185 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 + ++T Q V++ I + E+ +A + ++ A + +F + ++ L Sbjct: 186 NRVVTPQVVEEQIGVSKEFNGFELRDAIVNRNVFKANQIIKYFDENPKAGSIYSFLPLLF 245 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 FQ L + +N S E + + E ++ + +R ++ V + + K+ Sbjct: 246 NYFQNL--MIAFYAPNNKSQEGVAEWLEFKNPWQAKDYMT-GMRNYSGMKVMQIISKMRE 302 Query: 316 RIHLAR 321 ++ Sbjct: 303 IDAKSK 308 >gi|300118685|ref|ZP_07056413.1| DNA polymerase III subunit delta [Bacillus cereus SJ1] gi|298723934|gb|EFI64648.1| DNA polymerase III subunit delta [Bacillus cereus SJ1] Length = 194 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + I G I A +LL +G + E+ KL+ Y IT + V Sbjct: 4 QDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITPKLVA 63 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +++ + + + ++ I A+ + D + LL + +F+LL + + Sbjct: 64 ELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---V 120 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327 KE + + + + P + + + ++ +++ + ++ + + K ++ Sbjct: 121 KELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMD 179 Query: 328 KNIIFQTIL 336 K ++ + L Sbjct: 180 KKLVLEFFL 188 >gi|226355912|ref|YP_002785652.1| DNA polymerase III subunit delta [Deinococcus deserti VCD115] gi|226317902|gb|ACO45898.1| putative DNA polymerase III, delta subunit [Deinococcus deserti VCD115] Length = 300 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 100/304 (32%), Gaps = 20/304 (6%) Query: 39 NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL-IENLSTEKKV 97 + ++ +P L L ++ S LF +I+ +E + +K Sbjct: 15 ETLRDSLRARGLNPRELPRLGGEDVSAEGLRPH---LSPGLFGDGGVIVDLEGVKADK-- 69 Query: 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 L E++ ++ ++ L K+ EK V+ P + + + Sbjct: 70 --ALLELLSGAPVTVALLDEAP---PATRL-KLYEKHGEVIPSPA-PVKPGDVTGWVVQR 122 Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217 + ++A L G D EL KL+ +T V ++ Sbjct: 123 AKKAGLPLERDAAAYLGEVFGPDLAGIVGELNKLALLDGALDRVT---VHRVVGREPPGD 179 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 ++ A G+ A+ LAS L+ + ++ L+ + + + E Sbjct: 180 SFAMLGAATAGRPGEALTQLRRLLASGEDPFKLMGAVIWQYSLVARCVALLQEEGRVTE- 238 Query: 278 IIQKTEKNIIP-MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + P + L + R N+ +R L +I K+ ++ + I+ Sbjct: 239 ALAAQRLGVKPYPAKKALDVA-RRLNEARMRGHLSRILEADLGM-KRGLDAGTVLERLIV 296 Query: 337 YIAQ 340 ++ Sbjct: 297 QLSV 300 >gi|268590408|ref|ZP_06124629.1| DNA polymerase III, delta subunit [Providencia rettgeri DSM 1131] gi|291314322|gb|EFE54775.1| DNA polymerase III, delta subunit [Providencia rettgeri DSM 1131] Length = 343 Score = 69.2 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 111/311 (35%), Gaps = 29/311 (9%) Query: 24 FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G++ L+ E + +K + + FS LE + ++ + SLF+ Sbjct: 21 YLIWGNEPLLLQESQDAIRKAAQEQGFEEHFSFS----LEQNTDWDEIFSLCQALSLFAS 76 Query: 83 KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT----- 135 ++ + L+ + + L ++ + + + + + L K E Sbjct: 77 RQTLTLLLPENGPNAAMAEKLNQLAQLLHSDLL------LVLRGHKLTKAQENSAWFKAI 130 Query: 136 --SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + ISC L + + + S+ EA Q+L G+ + L++LS Sbjct: 131 SQDAIYISCLTPEYQRLPQWVSKRAYSMRLSLETEANQLLCYCYEGNLLGLAQALERLSL 190 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 D +T V+ + D+ ++A + GK + + + + LL Sbjct: 191 -LYPDGKLTYPRVESAVNDSAHFTPYHWVDALLAGKSRRSWHILEQLQQEDIEPVILLRS 249 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKT--EKNIIPMKRNILQESLRIWNKNLVRETLH 311 + LL + S ++ + + +R +L E+L+ + ++ L Sbjct: 250 IQRDLMLLITL------KRQSATTALKTLFDQHKVWQNRRGVLTEALQRLTLHQLQSALM 303 Query: 312 KIDHRIHLARK 322 + ++ Sbjct: 304 LLTQAEINIKQ 314 >gi|320010881|gb|ADW05731.1| DNA polymerase III, delta subunit [Streptomyces flavogriseus ATCC 33331] Length = 329 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 95/276 (34%), Gaps = 13/276 (4%) Query: 33 LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS 92 L+ + Q + + L ++Q T E+ S SLF+++K++++ N Sbjct: 24 LLLDRAVQHVVAAARAADSDTDVRDLTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQ 80 Query: 93 T-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 + ++ + ++++ + K + L + +A L Sbjct: 81 DLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGKSLLDAARKAGAREVACPKTTKPAERL 140 Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 + +S + EA Q L+ ++G D + + +L + I E V Sbjct: 141 SF-VRSEFRALGRSATPEACQALVDSIGSDLRELASAVSQLV--ADVEGTIDEAVVGRYY 197 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + + ++G+ A+ + L++ + + Q + I + Sbjct: 198 TGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSA 254 Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + ++ P K + +++ +R W + V Sbjct: 255 RGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 288 >gi|330469614|ref|YP_004407357.1| DNA polymerase III subunit delta [Verrucosispora maris AB-18-032] gi|328812585|gb|AEB46757.1| DNA polymerase III, delta subunit [Verrucosispora maris AB-18-032] Length = 314 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 8/242 (3%) Query: 71 WNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +E+ S SLF ++++++ + K ++ L + +I++ K Sbjct: 44 IDEMLSPSLFGGRRVLVLRSGQDARKDLVAALLAYAKHPDPDVQLIVQHLGAAKGKAFAD 103 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + + + + + + + +A + L+A +G D Sbjct: 104 GLKAAGAHIMPAAKLKGHRDRVAFVRDEFRRAGGRCTDDAAEALIAAVGNDLRELAAACA 163 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +L D I V + + +AT+ G + A+ + L + Sbjct: 164 QLI--ADTDGRIGADTVARYYRGRVEVSGFTVADATMVGDLPGALEALRWALHVGVDPVP 221 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + + S ++ P K Q R W + + Sbjct: 222 IADALA---DGIRTVARVASAGRGSPYQLASSLGMP--PWKVERAQRQARGWTPEGLVQA 276 Query: 310 LH 311 + Sbjct: 277 MQ 278 >gi|78780124|ref|YP_398236.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9312] gi|78713623|gb|ABB50800.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9312] Length = 333 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 125/331 (37%), Gaps = 37/331 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D I + ++ LN + + I+ ++EI + Sbjct: 2 PIQILWGNDLNAQNTFIKKLIDKEVSKEWKEINVTNLNGDD-DEQINKAFDEILTPPFGD 60 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 +I+ ++N + + + E+I N I+++ + +K L+K+ Sbjct: 61 GSRIVTLKNNPIFTTKNEDLRTKFEKIHDNIPTNTYFILQNTKKPDSRLKSTKFLQKLIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK S+ I Y K +E+S I K A ++++ ++G D N Sbjct: 121 NNLAKEKSFSLPEIWDYEGQKR----YLEDSANAMNIKIDKNAAELIIDSVGNDSFKLIN 176 Query: 187 ELQKLSSY-----CLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 EL K +Y + I + VK I D I +II+ +Q I +++ ++ Sbjct: 177 ELAKAKTYLSAVASDSNSQIFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINKSLIEINY 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQ 295 L P+ L G + + ++ I + N + EKI + K I +++ Sbjct: 236 SLQKGEPALRLNAGLISQIRIHTIIKLAVNSGNYNVEKICNLSGISNPKRIFFIQKK--- 292 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 ++ ++ + + + L +K Sbjct: 293 --VKNISQEYLINLMSNLLDIESLLKKGNNP 321 >gi|153005310|ref|YP_001379635.1| DNA polymerase III delta [Anaeromyxobacter sp. Fw109-5] gi|152028883|gb|ABS26651.1| DNA polymerase III delta [Anaeromyxobacter sp. Fw109-5] Length = 458 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 13/273 (4%) Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIII 115 ++ + ++ ++ + + + +L K L+ + K H+++ Sbjct: 148 RVDHAALAADLGVPEATYDAAFVEGAARFAVERDLKVAKDDASALDAALEKGFARGHVLV 207 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQKSISKEAK 170 + + ++ L K + I + L ++ L K + + + Sbjct: 208 VAAGKVDGKLPLVKKLAAAGRRVTIQLEKEGTWDAQRLVLGPVLASLLAGTGKRVDRGGE 267 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 L A +G D +E+ KL++Y + +I + V ++ + NA + Sbjct: 268 ARLAALVGEDARTLASEVAKLAAYVGDRKVIGAEDVDAVVTRVASDPFFALGNAIEARDL 327 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLL----EKIHIIKECSNISFEKIIQKTEKNI 286 A+ + D +A LL + + E+ I + + + Sbjct: 328 PQALGVLDRSIADGASPFMLLGSLASAVRRMIVERERARRAVGDRRIGSAREWEAEVFPL 387 Query: 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 +P ++ W K + + L Sbjct: 388 VPEDEAKGKKPFGFWMK---YQASTRFSRAELL 417 >gi|226229319|ref|YP_002763425.1| putative DNA polymerase III delta subunit [Gemmatimonas aurantiaca T-27] gi|226092510|dbj|BAH40955.1| putative DNA polymerase III delta subunit [Gemmatimonas aurantiaca T-27] Length = 385 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 112/353 (31%), Gaps = 43/353 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ +G D L I F+ + A +I + T + +N+ + + Sbjct: 29 PVYYLHGDDDYLKDGAIRDLLDAAIDPSTRDFNSEMRRAGDI--DAETLGSLLNTPPMLA 86 Query: 82 KKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ +++ + + +K L+ + + + ++++ S K +T + E TS+ Sbjct: 87 ERRALVLRDVTALKKAARAQLDRYLARPASDTLLLLVSPAGSKVDT--ALVEASTSLAFT 144 Query: 141 SCYPDNKIHLMDLIEESLLIG-QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197 P+ I I+ +A ++L +G D EL K +SY L Sbjct: 145 PLTPERVR---RWITHHAGTALNIDIAADAAELLQQAVGNDLHLLAAELDKCASYVLGAQ 201 Query: 198 ---------------------DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 I V ++ + ++++A + AI L Sbjct: 202 DAAGTTGTASDHASNAAPDITRATIDADAVSAVVGVRRGETVADLLDAVARQDAAVAITL 261 Query: 237 ADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECS---NISFEKIIQKTEKNIIPMKRN 292 L K+ ++ + L ++ N ++ ++ R Sbjct: 262 VGHVLGQPKVTGVQIVMMLSTQAFALSFGRARRDAGVPTNRLPQEYFAFLKETGGFPGRP 321 Query: 293 ------ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL-EKNIIFQTILYI 338 + W++ L + ++ + I+ IL + Sbjct: 322 WGDAASAWTKVTERWSRAACDRALRLLLEADMALKETTVSNAEQILMSLILGL 374 >gi|255535034|ref|YP_003095405.1| DNA polymerase III delta subunit [Flavobacteriaceae bacterium 3519-10] gi|255341230|gb|ACU07343.1| DNA polymerase III delta subunit [Flavobacteriaceae bacterium 3519-10] Length = 345 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 92/263 (34%), Gaps = 12/263 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFS-LVVLNALEIQKNISTFWNEINSTSLF 80 ++ F+G + I + F+ ++ F+ VV ++ + + Sbjct: 18 PIYFFHGEEPYYIDAAVKSFENDVLDEDEKAFNQTVVYGKDTTFSDVLSL---ARQFPMM 74 Query: 81 SKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FT 135 +++I+++ K V L+ L+ + + + +++I K + RK K Sbjct: 75 GDRQVIILKEAQEIKIVEKELEALKVYVQNPVPSTLLVIAYKYKKIDA--RKAFAKTLSK 132 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + I++ + +L LG D NEL+KL Sbjct: 133 NKMLFLSEKMYDNEVPRWIDQQIRNLGLRTKPNIPALLSEYLGTDLSRISNELRKLKMIL 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGF 254 + ++ E+ ++ I + I E+ A A+ +A F S K ++ G Sbjct: 193 NDTDILDEKIIETHIGISKDFNIFELTKALSNRDEAKAMRVAHFLGKSPKQNPFEMMMGS 252 Query: 255 LQKFQLLEKIHIIKECSNISFEK 277 L F I+ N + Sbjct: 253 LYSFFSNLIIYHTMAGQNPKAIQ 275 >gi|291444503|ref|ZP_06583893.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291347450|gb|EFE74354.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 334 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 89/249 (35%), Gaps = 13/249 (5%) Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIII 115 L ++Q T E+ S SLF+++K++++ N + ++ + + +++ Sbjct: 55 LTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITLVL 111 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + + K L + +A L + +S + EA Q L+ Sbjct: 112 LHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQALVD 170 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 ++G D + + +L + I E V + + ++G+ A+ Sbjct: 171 SIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALE 228 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + L++ +P + Q + I + + ++ P K + ++ Sbjct: 229 ALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVR 283 Query: 296 ESLRIWNKN 304 + +R W + Sbjct: 284 QQMRGWTPD 292 >gi|228987575|ref|ZP_04147692.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772149|gb|EEM20598.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 245 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 87/239 (36%), Gaps = 4/239 (1%) Query: 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 + LEE I + I++ + K + + + + + I Sbjct: 5 IKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKKTADVVEANAMQVQDVQKWIVAR 64 Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217 I A +LL +G + E+ KL+ Y IT + V +++ + Sbjct: 65 ADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITPKLVAELVPKSVEQN 124 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 + + ++ I A+ + D + LL + +F+LL + +KE + + Sbjct: 125 VFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---VKELQQRGYGQ 181 Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + P + + + ++ +++ + ++ + + K ++K ++ + L Sbjct: 182 NQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMDKKLVLEFFL 239 >gi|227503087|ref|ZP_03933136.1| DNA polymerase III delta subunit [Corynebacterium accolens ATCC 49725] gi|227076148|gb|EEI14111.1| DNA polymerase III delta subunit [Corynebacterium accolens ATCC 49725] Length = 322 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 111/337 (32%), Gaps = 35/337 (10%) Query: 22 FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V + G D+ L E K + + L+ L A E+ + E S SLF Sbjct: 6 PVHLILGDDEFL-TERARHTIHKAATEGEGNRPELMTLKASEVSEGE---ILEATSPSLF 61 Query: 81 SKKKIILIENLS-TEKKVLDCLEEIIIKN-ICNHIIIIKS------------NEIKKNNT 126 ++I+I + K+V+D + ++++ S E+ Sbjct: 62 GDNRVIVITDCERAGKEVVDIILRACANPAPGMTMVVVYSVAAKTLKKKKKAPELV--AK 119 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 LRKIAE S YP+ L + + +L +G D + Sbjct: 120 LRKIAEVHE---VFSLYPNE---LGQWATREFASHGVRPTPDVVHAVLDGVGSDLRELAS 173 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + +L +T++ V++ + +I +A + G++ A+ L Sbjct: 174 AISQLV--ADTGGNVTQEAVRNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGAS 231 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 A+ K + +++ + + ++ M + + R W + + Sbjct: 232 PVAIAAALANKVGAVARLYSARGDQYTLSSQT--GLAPYVVKMTQPVA----RRWTADAI 285 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + + + + + +A+ A Sbjct: 286 TAAVILVSELDAAVKGQGGEPEFAVEAAVKRVAELAR 322 >gi|145634091|ref|ZP_01789802.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA] gi|148826433|ref|YP_001291186.1| DNA polymerase III subunit delta [Haemophilus influenzae PittEE] gi|229845974|ref|ZP_04466086.1| DNA polymerase III subunit delta [Haemophilus influenzae 7P49H1] gi|145268535|gb|EDK08528.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA] gi|148716593|gb|ABQ98803.1| DNA polymerase III subunit delta [Haemophilus influenzae PittEE] gi|229810978|gb|EEP46695.1| DNA polymerase III subunit delta [Haemophilus influenzae 7P49H1] gi|309973581|gb|ADO96782.1| DNA polymerase III subunit delta [Haemophilus influenzae R2846] Length = 344 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 118/318 (37%), Gaps = 26/318 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133 K+I+ + +L L+E+I + ++I++ L K EK Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKAIEKQTWFIIL 129 Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + I+C +L ++ + EA Q L + + +A + LQ Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKVMGLDADNEAIQQLCYSYENNLLALKQALQL 189 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L D + V ++ + + + I+A + GK A + A + L Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248 Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305 L ++ L ++ I + ++I + ++ I +R + +++ Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308 Query: 306 VRETLHKIDHRIHLARKK 323 + E + ++ + LA+++ Sbjct: 309 LYEIIQELANIERLAKQE 326 >gi|297571560|ref|YP_003697334.1| DNA polymerase III subunit delta [Arcanobacterium haemolyticum DSM 20595] gi|296931907|gb|ADH92715.1| DNA polymerase III, delta subunit [Arcanobacterium haemolyticum DSM 20595] Length = 321 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 102/313 (32%), Gaps = 14/313 (4%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST- 93 E K + + + ++A I S SLF +++++++ NL Sbjct: 22 AERAITLLKRQARSIDPNTEVTDIDAQTY--GPGYLS-AIASPSLFGERRLLIVPNLENL 78 Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 D + + + + ++I++ N K + +K N+ Sbjct: 79 NAAFQDDILTYLTQPEPDVVLILQHNGGVKGKKVLTALKKHNIPTTTISAVKNQRDKTQA 138 Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + + + ++ EA L+ +G D +Q+L + LI E +V Sbjct: 139 VMADIRAAGRKMTPEAIGALIEAVGSDLRELLAAVQQLLADVHG--LIGEDNVHTYFAGR 196 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + +A I G I A+ LA LA+ A+L K+ + Sbjct: 197 IEAKGFNVADALIVGNIGEAVKLARHALATGASPTAILGAIAS------KLRTMAHILGQ 250 Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333 + I + +I+P + LR W + + I + + + + Sbjct: 251 RSDGI--DVKVSIVPWMAERAKRDLRGWTPAGLAVAISAIAKADADVKGGSRDPEYALER 308 Query: 334 TILYIAQTACKNN 346 IL + + Sbjct: 309 GILDVGRARKIRG 321 >gi|212715891|ref|ZP_03324019.1| hypothetical protein BIFCAT_00799 [Bifidobacterium catenulatum DSM 16992] gi|212661258|gb|EEB21833.1| hypothetical protein BIFCAT_00799 [Bifidobacterium catenulatum DSM 16992] Length = 324 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 114/330 (34%), Gaps = 25/330 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG D L E + ++ S H + L+A ++E S SL S++ Sbjct: 11 LIYGGDPYL-NEQTVRDLRHQSQRKHPDAETIELDATNADHYA---FDEAVSPSLLSERS 66 Query: 85 IILIENLSTEKK-----VLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVL 138 I+++ NL ++ ++ + I+I + IK + ++ + Sbjct: 67 IVIVSNLQNADDRLGETMVAYCKQAVNNPTEASIVICQHEGGIKGKRLIDQLTKAGAVKE 126 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIASRNELQKLSSYC 195 A++ L I + + I A Q L+A LG G+ A +L + Sbjct: 127 AVADLKKADAKLNFTI-QCFERRNRRIEPMAAQQLVAVLGDKTGELAAMAGQL----CFD 181 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D IT + V + + + + + G+ +AI+ + AL+ Sbjct: 182 FDDNPITLERVNQYLTANPQVDGFRVADLALSGRSADAIIAMRTSVEQGTAPIALIGALA 241 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ + + S + I + K + +N L W + +R + + Sbjct: 242 ------MKLRTMAKASAVRSGTISEAEAKTNSWVLKNA-TRQLSGWTSDGMRRCIQMLAW 294 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKN 345 ++ + + I I+ N Sbjct: 295 ADEQSKTNGSDPVYALERAIELISNKGRTN 324 >gi|317477015|ref|ZP_07936257.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|316906808|gb|EFV28520.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 339 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 115/326 (35%), Gaps = 17/326 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ G + I L + NI F+L V+ ++ +++T N + Sbjct: 21 RPVYYLMGEEPYYIDLLSDYITDNILNETEKEFNLTVMYGADV--DVATIINAAKRYPMM 78 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 S+ ++++++ + + + L + K + + I++I K + + L AE S + Sbjct: 79 SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKSGI 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197 L I + + +A +L +G D EL+KL + Sbjct: 136 LFESKKVRDAQLPTFITSYMKRKGVDMDSKATSMLADFVGTDLSRLTGELEKLIITLPKS 195 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 +T + ++ I + E+ +A ++ I A + +F + P L Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 F L + E + I R L ++R +N + + +I + Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311 Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338 ++ L + ++ + I I Sbjct: 312 TDAKSKGVGNSSLNDSDLLRELIFKI 337 >gi|111018296|ref|YP_701268.1| DNA polymerase III delta subunit [Rhodococcus jostii RHA1] gi|110817826|gb|ABG93110.1| possible DNA polymerase III delta subunit [Rhodococcus jostii RHA1] Length = 535 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 14/295 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSLFSK 82 + G ++ L+ E + D + L ++ + E+ S SLF++ Sbjct: 222 LVLGDEEFLV-ERAVAQVISHVRANADVAAGADLPVNRLRAGDAGAAELAELLSPSLFAE 280 Query: 83 KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++++E + K + + + ++++ + + + EK + Sbjct: 281 DRVVVLEAAAEAGKDAVALILDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKL-GAVVHP 339 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 C L+ I +S E Q + +G + +L++ I Sbjct: 340 CAKLKSGDLIGFIRGEFRTLGVRVSPEVVQSVFEGVGSNLRELAAACSQLTADTGGK--I 397 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + ++ + + G AI + + +P L + Sbjct: 398 DVAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALA---DAV 454 Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 I + ++ + K L + W V E L + Sbjct: 455 HSIARVAPAGRGDPFRMASELGMPPWKIKKAQALAKG---WTPTSVGEALRIVAS 506 >gi|260903876|ref|ZP_05912198.1| DNA polymerase III, delta subunit [Brevibacterium linens BL2] Length = 327 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 15/296 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G++ LI ++ DP V +A Q S SLFS Sbjct: 17 PVVMISGNEPVLIRMAKDRIVAAARKK--DP-EEVEFDAAGYQGGELLM---AASPSLFS 70 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K+I+++++ + L + + + ++++ + L K E Sbjct: 71 TAKLIIVDSVEKCSEAFLADALAYLDEPNDDAVVLLLHGGGNRGAKLVKKIEANGFPRVD 130 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + N+ + ++ I + L++ LG D +++L + Sbjct: 131 AAALKNESDRAKFAQGRFKAAKRQIDESGMAALMSALGADLSELNAGVEQLIEDT--EGT 188 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 IT Q V ++ +A + G + +A+ L L++ L+ K + Sbjct: 189 ITAQIVDQYYGGRVEATGFKVADAAVGGDVKSALSLLRHALSTGSDPVPLVAAVAMKLRG 248 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + K+ S ++ P + + + +R WN+ + ++L Sbjct: 249 MAKVQGFSGSSGELAAELKMA------PWQVDRARREVRRWNEVALGQSLIAAAEA 298 >gi|182438775|ref|YP_001826494.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779430|ref|ZP_08238695.1| DNA polymerase III, delta subunit [Streptomyces cf. griseus XylebKG-1] gi|178467291|dbj|BAG21811.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659763|gb|EGE44609.1| DNA polymerase III, delta subunit [Streptomyces cf. griseus XylebKG-1] Length = 328 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 89/251 (35%), Gaps = 14/251 (5%) Query: 59 NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113 + ++ + T E+ S SLF+++K++++ N + ++ + + + Sbjct: 45 DVRDLASDQLQPGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITL 103 Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 +++ + K L + +A L + +S + EA Q L Sbjct: 104 VLLHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQAL 162 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 + ++G D + + +L + I E V + + ++G+ A Sbjct: 163 VDSIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEA 220 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + L++ +P + Q + I + + ++ P K + Sbjct: 221 LEALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 275 Query: 294 LQESLRIWNKN 304 +++ +R W + Sbjct: 276 VRQQMRGWTPD 286 >gi|145630008|ref|ZP_01785790.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021] gi|144984289|gb|EDJ91712.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021] Length = 344 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 119/312 (38%), Gaps = 14/312 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L+ E + + + D + + +++ Q + S LF Sbjct: 19 RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWVQLIESCQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I+ + +L L+E+I + ++I++ ++ K + + + Sbjct: 76 SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V+ I+C +L ++ EA Q L + + +A + LQ L Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADDEAIQQLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D + V ++ + + + I+A + GK A + A + S LL + Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQSVILLRTLQR 254 Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311 + L ++ I + ++I + ++ I +R + +++ + E + Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314 Query: 312 KIDHRIHLARKK 323 ++ + LA+++ Sbjct: 315 ELANIERLAKQE 326 >gi|306836676|ref|ZP_07469641.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium accolens ATCC 49726] gi|304567448|gb|EFM43048.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium accolens ATCC 49726] Length = 322 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 111/336 (33%), Gaps = 33/336 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D+ L + K + L+ L A E+ + E S SLF Sbjct: 6 PVHLILGDDEFLTERARHTIHKAAAEGEATRPELMTLKASEVSEGE---ILEATSPSLFG 62 Query: 82 KKKIILIENLS-TEKKVLDCLEEIIIKN-ICNHIIIIKS------------NEIKKNNTL 127 ++I+I + K+V+D + + ++++ S E+ L Sbjct: 63 DNRVIVITDCERAGKEVVDIILRACVNPAPGMTMVVVYSVAAKTLKKKKKAPELV--AKL 120 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 RKIAE S YP+ L + + +L +G D + Sbjct: 121 RKIAEVHE---VFSLYPNE---LGQWATREFASHGVRPTPDVVHAVLDGVGSDLRELASA 174 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + +L +T++ V++ + +I +A + G++ A+ L Sbjct: 175 ISQLV--ADTGGNVTQEAVRNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 232 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A+ K + +++ + + ++ M + + R W + + Sbjct: 233 VAIAAALANKVGAVARLYSARGDQYTLASQT--GLAPYVVKMTQPVA----RRWTADDIT 286 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + + + + + IA+ A Sbjct: 287 AAVILVSELDAAVKGQGGEPEFAVEAAVKRIAELAR 322 >gi|257457472|ref|ZP_05622640.1| DNA polymerase III, delta subunit [Treponema vincentii ATCC 35580] gi|257445095|gb|EEV20170.1| DNA polymerase III, delta subunit [Treponema vincentii ATCC 35580] Length = 327 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 105/295 (35%), Gaps = 17/295 (5%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD--CLEEIIIKNI--CNHIIIIKSNEIK 122 IS + + + SLF++ + ++ N KK D L + + + I++ S+EI Sbjct: 41 ISVILDAVQNGSLFAEARFAVVRNAEAIKKKEDIHALTQWVEQTPAEDGAFIVLISDEIG 100 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + + + K + + + K + + +I +EA ++LL + + Sbjct: 101 IDKKIEALVPKDHKKIFWELFENKKQE---WLRRFFAQSKINIEQEAIEVLLELVENNTE 157 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A + +S + +T + V+ ++ + +A + A+ + Sbjct: 158 ALKTACTHISLFFEPGTTLTAETVERLLAHNKEETPFTLFDALSNANLEYALNIRQKLTL 217 Query: 243 SK-MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SL 298 SK L+ G F+ L H + + + + + + +++ + Sbjct: 218 SKESSPVQLIAGLTYCFRRLRDWHTLAQTGGLDDFSLKKAG-----FTSKKAIEQYRRAS 272 Query: 299 RIWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 R WN+ V + ++ R + L ++ + I + Y T Sbjct: 273 RQWNEQTVHRIISLLNKTDMQIRAMGQELSGILLDACLYSIICNQGRELAAYSET 327 >gi|325859968|ref|ZP_08173095.1| DNA polymerase III, delta subunit [Prevotella denticola CRIS 18C-A] gi|325482494|gb|EGC85500.1| DNA polymerase III, delta subunit [Prevotella denticola CRIS 18C-A] Length = 341 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 104/287 (36%), Gaps = 24/287 (8%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++S +F V++ G + I + + ++ F+ + Sbjct: 13 MQDLKSRRFA-----------PVYMLMGDEAYYIDLISDYIADHVLSPEERDFNQTICFG 61 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + + ++ ++I+++ + + + LE+ + + + I++ Sbjct: 62 SDVTA--VQVADMARRYPMMAEYQVIIVKEAQNVRSL-EALEKYLKNPVKSTILVWCHKN 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178 K + RK A + + L D I+ L SI +A Q++ ++G Sbjct: 119 GKIDA--RKKAFGLAQAVGVVFESKKLRDYQLPDFIQGYLKKKNVSIDPKACQMIADHIG 176 Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D +EL K L S + + +T + V+ I + E+ NA IQ + A + Sbjct: 177 TDLSRLASELDKVLISLPEDHLRVTPEVVEREIGVSKDFNAFELRNAIIQKDSFKANQIV 236 Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 +F ++ L FQ L +H + E+ I Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNSEQDIAGA 280 >gi|160947264|ref|ZP_02094431.1| hypothetical protein PEPMIC_01197 [Parvimonas micra ATCC 33270] gi|158446398|gb|EDP23393.1| hypothetical protein PEPMIC_01197 [Parvimonas micra ATCC 33270] Length = 348 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 98/257 (38%), Gaps = 22/257 (8%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + +++ G + LI + FK+ I D F + + + ++ + + F Sbjct: 16 NGIYVLSGEEIFLIDRFVELFKEKIVSK--DFFDMNYIEYDFSKIDLQKLKIDCETAPFF 73 Query: 81 SKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 S K++I++ + +S K + + + I K +++ +K + R K Sbjct: 74 SNKRLIIVNDVNLSKNGISMYKNFFEEMYDYIDKIPNTTVLLFV---MKGSLAFRGKFYK 130 Query: 134 FTSVLA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------GDRIAS 184 S+L I N+I L I++ ++ + + ++ +G + Sbjct: 131 QISILGHNIELIRFNEIELFKFIKKRFVLKNIEVKDIVLKYIIDRIGYLDSSREKNLYDV 190 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 NE+ KL ++ + V +I+ D I ++++ + N+I + S Sbjct: 191 ENEVNKL-LNSFSRNVLDFKDVDEILIDKFENSIFKLLDMISKKDYKNSIKILVELKKSG 249 Query: 245 MPSHALLHGFLQKFQLL 261 S + + ++ + L Sbjct: 250 EDSFSTFYMIVRYIRNL 266 >gi|225352046|ref|ZP_03743069.1| hypothetical protein BIFPSEUDO_03654 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157293|gb|EEG70632.1| hypothetical protein BIFPSEUDO_03654 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 325 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 25/320 (7%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 + + YG D L E + ++ + H + L+A ++E Sbjct: 2 PKPSATTPFHLIYGGDPYL-NEQTVRDLRHQAQRKHPDAETIELDATNADHYA---FDEA 57 Query: 75 NSTSLFSKKKIILIENLSTEKKVLDCL-----EEIIIKNICNHIIIIK-SNEIKKNNTLR 128 S SL S++ I+++ NL L ++ + ++I + IK + Sbjct: 58 VSPSLLSERSIVIVSNLQNADDKLGETMVAYCKQAVNNPAEASVVICQHEGGIKGKRLID 117 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIASR 185 ++ + ++ + L I + + I A Q L+A LG G+ A Sbjct: 118 QLTKAGAVKETVADLKKAEAKLNFTI-QCFERRNRRIEPMAAQQLVAVLGDKTGELAAMA 176 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +L + +D IT + V + + + + + G+ +AI+ + Sbjct: 177 GQL----CFDFDDNPITLERVNQYLTANPQVDGFRVADLALSGRAADAIIAMRASIEQGT 232 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 AL+ K+ + + S + I + K + +N L W + Sbjct: 233 APIALIGALA------MKLRTMAKASAVRSGTISEAEAKTNSWVLKNA-TRQLSGWTSDG 285 Query: 306 VRETLHKIDHRIHLARKKKY 325 +R + + ++ Sbjct: 286 MRRCIQMLAWADEQSKTNGS 305 >gi|328955419|ref|YP_004372752.1| DNA polymerase III, delta subunit [Coriobacterium glomerans PW2] gi|328455743|gb|AEB06937.1| DNA polymerase III, delta subunit [Coriobacterium glomerans PW2] Length = 323 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 89/218 (40%), Gaps = 3/218 (1%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D+ + + K + + F+L + + ++++ + + +N+ + + Sbjct: 8 PGYLIIGADEVKRDIAVGRLKARLEMDGMADFNLDERD-MTKEQDVDSLISSLNTFPMDA 66 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++++ K + + L + + ++ + + ++ L K + I Sbjct: 67 PFRLVILYGCDRLAKPMSEMLVDYFGDPAPTTVCLVIATSLSRSTRLHKAVSALGAQALI 126 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C + L ++ + K+++++A + L+ G NEL+KL+ E Sbjct: 127 DCATKKRWELPGQVQSMMRRHGKTMTRQAAEELVGRSGLSTRMLDNELKKLARMT-EAPE 185 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 I V+ ++ T + ++++A I +I L Sbjct: 186 IGVADVERLVMRTAEVQPWDLLDALSARDIARSIELYQ 223 >gi|302345695|ref|YP_003814048.1| DNA polymerase III, delta subunit [Prevotella melaninogenica ATCC 25845] gi|302149314|gb|ADK95576.1| DNA polymerase III, delta subunit [Prevotella melaninogenica ATCC 25845] Length = 341 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 13/266 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I ++ +++ F+ + ++ + + + Sbjct: 23 PIYMLMGEESYYIDQISGYISEHVLSPEERDFNQTICFGSDVTA--VQVADMARRYPMMA 80 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + ++I+++ + + + LE+ + + + I++ K + RK A + + Sbjct: 81 EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDA--RKKAVGLAQAVGVV 137 Query: 142 CYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198 L D I+ L + SI +A QI+ ++G D +EL K L S ++ Sbjct: 138 FESKKLRDYQLPDFIQSYLKERKVSIDSKACQIIADHIGADLSRLTSELDKVLISLPADN 197 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256 + +T + V+ I + E+ NA +Q + A + +F + L Sbjct: 198 LRVTPEVVEKEIGVSKDFNTFELRNAIVQKDCFKANQIVKYFDNNPKAGSLYSFLPLLFS 257 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKT 282 FQ L +H + E+ I Sbjct: 258 YFQSLMIVHY---SPRKNTEQDIAAA 280 >gi|212638668|ref|YP_002315188.1| DNA polymerase III subunit delta [Anoxybacillus flavithermus WK1] gi|212560148|gb|ACJ33203.1| DNA polymerase III, delta subunit [Anoxybacillus flavithermus WK1] Length = 305 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 103/297 (34%), Gaps = 24/297 (8%) Query: 39 NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEK 95 Q + +++ + E I + + F ++KI++++ L+ EK Sbjct: 6 EQIIRRTLSDEEREWNVSTYDCEET--PIEVALEDAETLPFFGERKIVIVKQPYFLTAEK 63 Query: 96 KV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF--TSVLAISCYPDNK 147 + LE I K ++ + K + RK K I P N+ Sbjct: 64 GKEKVEHDVKRLEAYIDKPAPFSSVMFVGSYEKLDE--RKKVTKALLKKAHVIVAKPLNE 121 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L + GQ I+ +A +LL G D NE++KL + IT V+ Sbjct: 122 KELKQWV-----KGQCRIADDAIDVLLTLAGTDLATLANEIEKLMLFAEGRS-ITADDVR 175 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ T + ++ + I +A+ L L+ +F+L+ ++ + Sbjct: 176 LLVSRTLEQNVFVLVEQIAKRNITDALQTLQDLLRQNEEPIKLVALLASQFRLVYEVKEL 235 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 + ++ I + P + + +++ + L+ + + + Sbjct: 236 MKTG--YGQQQIASML-GVHPFRVKMAASYAGGFSEQQLMHILYDLAETDYALKSSA 289 >gi|288802702|ref|ZP_06408140.1| DNA polymerase III, delta subunit [Prevotella melaninogenica D18] gi|288334852|gb|EFC73289.1| DNA polymerase III, delta subunit [Prevotella melaninogenica D18] Length = 341 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 13/266 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I ++ +++ F+ + ++ + + + Sbjct: 23 PIYMLMGEESYYIDQISGYIAEHVLSPEERDFNQTICFGSDVTA--VQVADMARRYPMMA 80 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + ++I+++ + + + LE+ + + + I++ K + RK A + + Sbjct: 81 EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDA--RKKAVGLAQAVGVV 137 Query: 142 CYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198 L D I+ L + SI +A QI+ ++G D +EL K L S ++ Sbjct: 138 FESKKLRDYQLPDFIQSYLKERKVSIDSKACQIIADHIGADLSRLTSELDKVLISLPADN 197 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256 + +T + V+ I + E+ NA +Q + A + +F + L Sbjct: 198 LRVTPEVVEKEIGVSKDFNAFELRNAIVQKDCFKANQIVKYFDNNPKAGSLYSFLPLLFS 257 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKT 282 FQ L +H + E+ I Sbjct: 258 YFQSLMIVHY---SPRKNTEQDIAAA 280 >gi|163752477|ref|ZP_02159666.1| DNA polymerase III, delta subunit [Shewanella benthica KT99] gi|161327621|gb|EDP98816.1| DNA polymerase III, delta subunit [Shewanella benthica KT99] Length = 346 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 39/314 (12%), Positives = 110/314 (35%), Gaps = 12/314 (3%) Query: 15 KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 +NL ++ +G D L + + S + + L E N + + Sbjct: 10 RNLSPLKQCYLIFGDDPWLCQTSRSQIYHQAKSQGFEEKIQLTQ----ETGFNWNELVEQ 65 Query: 74 INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLFS +++I + + + ++ + ++I+ ++ T K Sbjct: 66 WQAMSLFSSRRVIELTLPQAKPGAEGGAIFQSLMQMTNPDVLLILTGPKLAAEQTKSKWF 125 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + + C +E + +++++AK +L + G+ +A+ ++ + Sbjct: 126 KTLDSQGIYVPCMTPEGSQFQRWLESRIQHFALNLTRDAKDMLFSLYEGNLLAA-DQSLQ 184 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L I + D + ++ +A + + A + A + + Sbjct: 185 LLQLLSPSEQIDSPELSRYFEDQSRFSVFQLTDAMLNNRQDKAQHILCQLKAEGVAMPII 244 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L G ++ +L ++ +E S + + K I ++ + +L + + L Sbjct: 245 LWGIFKELAILLQLKSAQEAQ-KSLQGLWGKLR--IWDKRKPLYLAALNRLSLFQIEALL 301 Query: 311 HKIDHRIHLARKKK 324 +++ Sbjct: 302 ASASDIELRLKQQG 315 >gi|15894555|ref|NP_347904.1| DNA polymerase III subunit delta [Clostridium acetobutylicum ATCC 824] gi|15024200|gb|AAK79244.1|AE007639_17 Uncharacterized protein, YQEN B.subtilis homolog [Clostridium acetobutylicum ATCC 824] gi|325508687|gb|ADZ20323.1| DNA polymerase III subunit delta [Clostridium acetobutylicum EA 2018] Length = 343 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 112/276 (40%), Gaps = 20/276 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+I G ++ L+ E IN+ K + + V + E++ N + S Sbjct: 18 NVYIMCGFNEKLMKESINKILKKSISQDFESLNYSVFDGNEVEF--EDILNACETVPFMS 75 Query: 82 KKKIILIENLS-----------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTL 127 +K+++++ K++ +E+ + + I++ + N +K + Sbjct: 76 EKRMVVVYRAGFLNDNSSGSNKNSDKLIKDIEKYVPNVPKHCILVMYYVFDNTREKPSYR 135 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K +K V + + +++ K I K + + + NE Sbjct: 136 VKKFDK--KVCVVEFSKLRGMQFQKKVKDVFAEKGKQIGKTELNYFCSRVENNMDIVYNE 193 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL Y LE IT++ + +++ I +++ Q K AI + + + + + Sbjct: 194 IEKLCCYTLE-KEITKESIDNLLQPNETDDIFNLVDYISQSKPEMAITVLNEIMYKGVKA 252 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 +++L+ ++F+L+ I I E S E ++++ + Sbjct: 253 NSILYMVERQFKLMLSIKIGIENK-QSKEALVKELK 287 >gi|327313789|ref|YP_004329226.1| DNA polymerase III subunit delta [Prevotella denticola F0289] gi|326945332|gb|AEA21217.1| DNA polymerase III, delta subunit [Prevotella denticola F0289] Length = 341 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 104/287 (36%), Gaps = 24/287 (8%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++S +F V++ G + I + + ++ F+ + Sbjct: 13 MQDLKSRRFA-----------PVYMLMGDEAYYIDLISDYIADHVLSPEERDFNQTICFG 61 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 ++ + + ++ ++I+++ + + + LE+ + + + I++ Sbjct: 62 SDVTA--VQVADMARRYPMMAEYQVIIVKEAQNVRSL-EALEKYLKNPVKSTILVWCHKN 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178 K + RK A + + L D I+ L SI +A Q++ ++G Sbjct: 119 GKIDA--RKKAIGLAQAVGVVFESKKLRDYQLPDFIQGYLKKKNVSIDPKACQMIADHIG 176 Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D +EL K L S + + +T + V+ I + E+ NA IQ + A + Sbjct: 177 TDLSRLASELDKVLISLPEDHLRVTPEVVEREIGVSKDFNAFELRNAIIQKDSFKANQIV 236 Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 +F ++ L FQ L +H + E+ I Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNSEQDIAGA 280 >gi|328882390|emb|CCA55629.1| DNA polymerase III delta subunit [Streptomyces venezuelae ATCC 10712] Length = 329 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 90/252 (35%), Gaps = 11/252 (4%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 + E+ S SLF+++K++++ N + ++ + + + ++++ + K Sbjct: 56 PGSLA-ELTSPSLFAERKVLVVRNAQDLSADTIKDVKAYLDDPVEDISLVLLHAGGAKGK 114 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + + +S + EA Q L+ ++G D Sbjct: 115 GLLDAARKAGAREVACPKTTKPAERL-TFVRQEFRTLGRSATPEACQALVDSIGSDLREL 173 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L+ D I E V I + ++G+ A+ + L++ Sbjct: 174 ASAVAQLT--SDVDGTIDEAVVGRYYTGRAEASSFNIADRAVEGRTAEALEALRWSLSTG 231 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + I + + ++ P K + +++ +R W + Sbjct: 232 VAPVLVTSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 286 Query: 305 LVRETLHKIDHR 316 V L I Sbjct: 287 GVSLALRAIAEA 298 >gi|108761070|ref|YP_631018.1| DNA polymerase III subunit delta [Myxococcus xanthus DK 1622] gi|108464950|gb|ABF90135.1| DNA polymerase III, delta subunit [Myxococcus xanthus DK 1622] Length = 444 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 81/206 (39%), Gaps = 8/206 (3%) Query: 89 ENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL---AISCYP 144 E +S + L ++I K H +++ ++++ N L K+A V+ + + Sbjct: 169 ERISAPEGDASALLDLIQKGVPAGHALVLAASDMDAKNPLVKLAHDKGYVVERKVAARHK 228 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 D + L D+ +E L +K + A L +GG+ ++EL+KL++Y I Sbjct: 229 D--LDLTDIAKEFLAPFKKKLGPGALDELKERIGGNIRLLQSELEKLATYSEGP-AIERA 285 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 V ++ E+ A + A+ A+ + + LL + L + Sbjct: 286 DVAALVHHAREEEFFELSEALQKRDFGGALSYANDAMGQGTHALQLLGAVASIVRGLLES 345 Query: 265 HI-IKECSNISFEKIIQKTEKNIIPM 289 H + + + + + E + P Sbjct: 346 HEWLWRYAGGNPPRTAKDVEARVFPR 371 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 10/104 (9%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ E + V++ G + L+ + ++ K + +L VL+A Sbjct: 1 MSASEMDDVLASVKGGKVA--PVYLLVGEE-FLVRKGADELVKLLVPDAAMGLNLAVLDA 57 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKVLDCL 101 + E+ + LF +K++L+ + L+ +K D L Sbjct: 58 ----GSPREVAQELATLPLFPGRKVVLVRDPEFLAPKKGRGDAL 97 >gi|239941063|ref|ZP_04693000.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239987543|ref|ZP_04708207.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 328 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 89/249 (35%), Gaps = 13/249 (5%) Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIII 115 L ++Q T E+ S SLF+++K++++ N + ++ + + +++ Sbjct: 49 LTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITLVL 105 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + + K L + +A L + +S + EA Q L+ Sbjct: 106 LHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQALVD 164 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 ++G D + + +L + I E V + + ++G+ A+ Sbjct: 165 SIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALE 222 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + L++ +P + Q + I + + ++ P K + ++ Sbjct: 223 ALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVR 277 Query: 296 ESLRIWNKN 304 + +R W + Sbjct: 278 QQMRGWTPD 286 >gi|311895989|dbj|BAJ28397.1| putative DNA polymerase III subunit delta [Kitasatospora setae KM-6054] Length = 331 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 10/285 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 E+ + SLF+++K+I++ + ++ + ++++ + K Sbjct: 55 PGQLA-ELTTPSLFAERKVIVVRAAQDLSADSVKEVKAYLESPAEEVIMVLVHAGGAKGK 113 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A + L I ++ S EA Q LL +LG D Sbjct: 114 GLLDAAKKAGAREVACAKLTKAGEKLAF-IRNEFRTLGRAASPEACQALLDSLGSDLREL 172 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +L+ + I E V E+ + + G+ A+ + LA Sbjct: 173 SAACSQLT--ADIEGPIDETAVAKYYSGRAEATGFEVADLAVTGRAAEALERLRWALAVG 230 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 P + + + + + N+ + ++ P K + +++ +R W + Sbjct: 231 QPPTGITYALASGVRSIG--RLASAGRNMRPGDLARELGMP--PWKIDRVRQQMRGWTGD 286 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349 V L + + + + ++ +A+ + + Y Sbjct: 287 GVAAALTAVAEADAAVKGGSDDPAYALERAVVAVARASRAGSRPY 331 >gi|330837534|ref|YP_004412175.1| DNA polymerase III delta [Spirochaeta coccoides DSM 17374] gi|329749437|gb|AEC02793.1| DNA polymerase III delta [Spirochaeta coccoides DSM 17374] Length = 356 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 112/318 (35%), Gaps = 24/318 (7%) Query: 23 VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 +++ G + G I + + + I + ++ L Sbjct: 8 AYLYLGPENGEKDAAVSRIRNALAGAHPALDEYLFIASKDDESIHG----LSEALTNSGL 63 Query: 80 FSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 FS IL+ S K L + + + + + I++ S+E + + TL+K+ K Sbjct: 64 FSDYSFILLRIASEAKVSTLQPVLDWLKEPTPDVTIVLTSDETRVSATLQKLVPKQNQQ- 122 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + Y + I++ + IS+ A ++L + + +L+ Y +D Sbjct: 123 --TFYEMFENRKPQWIQDFFRSRRMGISRGATDLILTLVDNSTDELKEACARLADYLSQD 180 Query: 199 -----ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 +TE+ V+ + + + + +G + A++ ++ ++ L Sbjct: 181 SSAKHSSVTEEDVEAYLSFSQGVTAFSVFEHVARGNLNGALLTIHSYMDAEPNKLPQLLA 240 Query: 254 FLQ-KFQLLEKIHIIKECSNISFEKIIQKT---EKNI---IPMKRNILQESLRIWNKNLV 306 + + + L + ++ ++ +Q K + + + +E++R ++ + Sbjct: 241 AMSWQMRRLLSL-SENLSQGMNEDEAMQSVVTYGKPVPIRNLKDKGLNKEAVRRYSPEDI 299 Query: 307 RETLHKIDHRIHLARKKK 324 + L + R Sbjct: 300 KTILVSLADWDRDIRSWP 317 >gi|302519012|ref|ZP_07271354.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB78] gi|302427907|gb|EFK99722.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB78] Length = 332 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 112/340 (32%), Gaps = 16/340 (4%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68 + + + + + G ++ LI + + + + L ++Q Sbjct: 6 VMARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PG 62 Query: 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNT 126 E+ S SLF+++K++++ N + ++ + + +++ + K Sbjct: 63 GLA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGL 121 Query: 127 LRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 L + + C + + +S + EA Q L+ +G D Sbjct: 122 LDAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELA 179 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 + +L+ + I E V + + ++G+ A+ + L++ + Sbjct: 180 AAVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGV 237 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + Q + I + + ++ P K + +++ +R W + Sbjct: 238 APVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDG 292 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 V L + + + + + I+ +A+ A Sbjct: 293 VSIALRAVAEADAGVKGGGDDPEYALEKAIVTVARAARSR 332 >gi|288575363|ref|ZP_06393663.1| DNA polymerase III, delta subunit [Neisseria mucosa ATCC 25996] gi|288567929|gb|EFC89489.1| DNA polymerase III, delta subunit [Neisseria mucosa ATCC 25996] Length = 306 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 6/175 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I +G + L E ++ + + + + + S LF+ Sbjct: 17 PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVFTADNG---ADWDELLQSAGSAGLFA 73 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 K+ I I N K D L+ + + +I +++K T K Sbjct: 74 DLKLLEIHIPNGKPGKNGGDALQTFAEHLPEDTVSLILLPKLEKAQTQAKWFTALAAKGT 133 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + L I+ L I +A + + G+ +A+R E+ KL+ Sbjct: 134 VLEAKAISAQALPQWIKGRLKKVGLDIEPDALALFAERVEGNLLAARQEIDKLAL 188 >gi|295838948|ref|ZP_06825881.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB74] gi|197695504|gb|EDY42437.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB74] Length = 333 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 112/340 (32%), Gaps = 16/340 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + + + + G ++ LI + + + + L ++Q Sbjct: 7 MARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PGG 63 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + + +++ + K L Sbjct: 64 LA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGLL 122 Query: 128 RKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + + C + + +S + EA Q L+ +G D Sbjct: 123 DAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELAA 180 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + +L+ + I E V + + ++G+ A+ + L++ + Sbjct: 181 AVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGVA 238 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + Q + I + + ++ P K + +++ +R W + V Sbjct: 239 PVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 293 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 L + + + + + ++ IA+ A Sbjct: 294 SIALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRR 333 >gi|167625142|ref|YP_001675436.1| DNA polymerase III subunit delta [Shewanella halifaxensis HAW-EB4] gi|167355164|gb|ABZ77777.1| DNA polymerase III, delta subunit [Shewanella halifaxensis HAW-EB4] Length = 343 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 12/304 (3%) Query: 25 IFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G D L + F + + + L + + + + SLFS + Sbjct: 20 LIFGDDPWLCEQSRAVIFAEAKRQGFEEKIQLTQETGFSWNE----LFEQWQAMSLFSSR 75 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + + L+ ++ + + ++I+ ++ T K + + + Sbjct: 76 RIIELTLPQAKPGTEGSTMLQSLMQMDNPDVLLILTGPKLAAEQTKSKWFKVLDAKGIYV 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++ + S++++ +++L A G+ +A+ LQ L Sbjct: 136 PCTTPEGAQFQRWLDGRINHYGLSMARDPREMLFALYEGNLLAADQALQLLQLLS-PTAP 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + + D + ++ +A + + A + + + +L ++ + Sbjct: 195 IDCEQLSQYFEDQSRFSVFQLTDAMLSNQQDKAQHILSQLKSEGVAMPIILWSLFKELTV 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L ++ + + + + K I ++ I Q +L V L Sbjct: 255 LLQLKA-AQNNPEPLQGVWSKLR--IWDKRKPIYQNALNRLELTHVETLLAGASSIELKL 311 Query: 321 RKKK 324 +++ Sbjct: 312 KQQG 315 >gi|261880299|ref|ZP_06006726.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332988|gb|EFA43774.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 342 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 94/258 (36%), Gaps = 12/258 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G + I ++ + ++ F V+ ++ N + + + + Sbjct: 24 PIYVLMGEESYYIDQISDYILNHVLSPDQQAFDQTVVFGADV--NAAQVADLAMQYPMMA 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +K+I+++ + + LE+ +++I K+ I + AE+ + Sbjct: 82 SRKVIVVKEAQGMRSF-EKLEKYAENPQPKTVLVICYKNGTINRRTKFMAAAER--VGVV 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197 L I+ L I +++ ++ +G D ++EL KL L Sbjct: 139 FESKKLKDWQLPRHIQMYLATQNVGIDEKSASMIAGCIGADLNRLQSELDKL-LIALPEK 197 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255 D IT + V+ I + E+ +A + I+ A + +F ++ ++ L Sbjct: 198 DRRITPEMVEKNIGVSKDFNAFELRSAIVNKDIFKANQIIKYFDSNPKAGSVYSFLPLLF 257 Query: 256 QKFQLLEKIHIIKECSNI 273 FQ L + + Sbjct: 258 NFFQNLMIAYYAPNRGDK 275 >gi|238755063|ref|ZP_04616411.1| DNA polymerase III subunit delta [Yersinia ruckeri ATCC 29473] gi|238706767|gb|EEP99136.1| DNA polymerase III subunit delta [Yersinia ruckeri ATCC 29473] Length = 314 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 71/201 (35%), Gaps = 4/201 (1%) Query: 74 INSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + SLF+ ++ +++ + + + L ++ + ++++++N++ K Sbjct: 38 CQAMSLFANRQTLLLVFPDTGLTAAMSEQLVKLTTLLHPDILLMLRANKLTKAQENSAWF 97 Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + ++C + L ++ + A Q+L G+ +A L + Sbjct: 98 KALSPHGALVNCLAPEQAQLPRWVQTRAKSIHLDVDDAAVQLLCYCYEGNLLALSQALAR 157 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 LS D +T V+ + D ++A + GK A + L Sbjct: 158 LSL-LYPDGKLTLPRVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPIIL 216 Query: 251 LHGFLQKFQLLEKIHIIKECS 271 L ++ LL + S Sbjct: 217 LRTVQRELLLLLTLKRQMANS 237 >gi|317471377|ref|ZP_07930731.1| hypothetical protein HMPREF1011_01079 [Anaerostipes sp. 3_2_56FAA] gi|316901128|gb|EFV23088.1| hypothetical protein HMPREF1011_01079 [Anaerostipes sp. 3_2_56FAA] Length = 173 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 4/172 (2%) Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 ++++ Q+ L G D +NEL+KL SY +I + ++ + I ++ A Sbjct: 1 MTQKDIQLFLYKTGQDMFTIKNELEKLISYTKGREVIGAEDLEALTTAQTTNQIFVMLEA 60 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 + + + L + K +L +++ L + + + E + Sbjct: 61 IAKKQRDTVLKLYYDLIELKESPFGILALLVRQCNQLLQTQSLLKAGKSQGEMAKELKVP 120 Query: 285 NIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + L++ +R++ + + + K K + I + +L Sbjct: 121 P-FVAGK--LKQQVRLFKREEL-YEMIKKCAATDEGIKTGKITDRIGVELLL 168 >gi|39938502|ref|NP_950268.1| DNA polymerase III delta subunit [Onion yellows phytoplasma OY-M] gi|39721611|dbj|BAD04101.1| DNA polymerase III delta subunit [Onion yellows phytoplasma OY-M] Length = 323 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 12/238 (5%) Query: 70 FWNEINSTSLFSK--KKIILIENLST--EKKVLDC--LEEIIIKNICNHIIIIKSNEIKK 123 E+ +TSL KK++L+++ +KK + L + N + + + K Sbjct: 49 LQKELQTTSLIESAWKKVVLVDHSEILFQKKPQEMAFLISYLQNPYNNLDLYFFAEKTTK 108 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + ++KI EK L + K I E I +A Q L++ + Sbjct: 109 ASEVQKIWEK--YCLCKTTNSLEKKDFFKYIMEVFQKDGFQIDTKAIQELVSKTNYNLYL 166 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E+ K+ + D IT Q V+ I I +IN ++ +A + Sbjct: 167 LHQEITKIKLFQSNDKNITCQLVQKINAFKENDNIFGLINLFLKQNYIDAYQMYQTLKTQ 226 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIP--MKRNILQES 297 K+ + +++ K + L + + + E K++ ++ + + +++ Sbjct: 227 KINAFHVINQLTHKIKELLLVKEMLQQKKTPEEVQKVLPVSQGKVFFLMKEAKLIETQ 284 >gi|309388914|gb|ADO76794.1| DNA polymerase III, delta subunit [Halanaerobium praevalens DSM 2228] Length = 335 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 123/310 (39%), Gaps = 22/310 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ Y + L + +F + F+L +N + + + ++ + + + ++ Sbjct: 16 LYYIYAENTYLRNKFKKEFMQKFIPHSIRDFNLAKVNPGD--EYLKRLYSAVQTPPMGAE 73 Query: 83 KKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 K+ I I + + +E +++ + + ++ + +N++ K RK + + Sbjct: 74 KRYI-ISDFDDSDSLNQKQKEKLLEIFKGLSTSSTLVFLTANKLDKR---RKFYQALKEI 129 Query: 138 LAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + L I E K I +++ +IL +E++K+ + Sbjct: 130 AEYQEFEPPRYRDLDKWIMERFQKYNKKIDRQSLKILENMFSNKLEILNSEIEKIITRYP 189 Query: 197 EDILITEQHVKDIICDTH---VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + I+ +K+II I + ++ K A++ L + LL Sbjct: 190 DKDKISYYDLKEIISREKFIQDEEIFKFLDLIGDKKTDQALLTLKEMLNKGVYPLYLLTM 249 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + +LL ++ + ++ + +KI K K+ P ++++++ ++N ++ L +I Sbjct: 250 LKNQIELLMQVKFYSQYTH-NNKKIAAKLNKHPYP-----VKKAMKR-SRNFSQKELEQI 302 Query: 314 DHRIHLARKK 323 I A + Sbjct: 303 LAEILRANRH 312 >gi|154509306|ref|ZP_02044948.1| hypothetical protein ACTODO_01831 [Actinomyces odontolyticus ATCC 17982] gi|153798940|gb|EDN81360.1| hypothetical protein ACTODO_01831 [Actinomyces odontolyticus ATCC 17982] Length = 306 Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 108/323 (33%), Gaps = 21/323 (6%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G + L+ ++Q + DP +L + + I S SLF + + Sbjct: 2 LIKGPEGLLVDRALDQLRALAHEA--DP-NLERTDINAATYQAGQL-DVIASPSLFGESR 57 Query: 85 IILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I +L T + + L + + + + + K + + Sbjct: 58 MVIIRDLETMSDALANDLIAYAGAPAPDVWMFLAHPGGNARGKKVIDTITKAKWPVIPAE 117 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 N + LI + ++ + EA+Q L+ LG D A L +L IT Sbjct: 118 PLKNDRDKLALIASDVRAARRQMDTEAQQALVDALGNDPRAMAGALAQLL--SDVSGRIT 175 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ ++ +A + G A+MLA A+ + L+ KF+ + Sbjct: 176 LEDVRRYQAGRVEATGYDVADAAVAGNSAKALMLARHAFATGIAPQLLVSALAMKFRAMA 235 Query: 263 KIHIIKECSN-ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 K+ I S+ + + LR W+ + I + Sbjct: 236 KVSIGGSASSLKMAPWQVDRAR------------WELRGWSDASLAGAFGAIATADAETK 283 Query: 322 KKKYLEKNIIFQTILYIAQTACK 344 + I + I+ I + + Sbjct: 284 GASRDPQRAIEKAIITICRLRGR 306 >gi|295099649|emb|CBK88738.1| DNA polymerase III, delta subunit [Eubacterium cylindroides T2-87] Length = 268 Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 88/213 (41%), Gaps = 9/213 (4%) Query: 78 SLFSKKKIILIENL---STEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAE 132 S+F K+I+IEN S++ ++ I + N + I++ K + + + E Sbjct: 7 SIFDDDKMIVIENATFLSSKDTTKYDIKGFIDRSTNDESVILVFCCPSDKLDTRKKAVKE 66 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + C ++ L I E L + ++A + A G D + EL K Sbjct: 67 LISKSNVYPCIALDEKSLPGYINEELKKLNLKMDRDAIKWFSARAGFDALRIEQELIKFK 126 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++ + IT + V+D++ + + ++++A + + F M A+ Sbjct: 127 TF---NDHITLKDVQDLMVCEPLNDVFKMVDALFERNALRLLAYYRNFRKLNMEPVAING 183 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 + + L ++ ++ + N S E+I ++ + + Sbjct: 184 LLSGQIRFLFQVRVLMDQGN-SKEEIARRLKAH 215 >gi|187778451|ref|ZP_02994924.1| hypothetical protein CLOSPO_02045 [Clostridium sporogenes ATCC 15579] gi|187772076|gb|EDU35878.1| hypothetical protein CLOSPO_02045 [Clostridium sporogenes ATCC 15579] Length = 343 Score = 67.3 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + V + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNVNNDFKDLNYVQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK++LI KK+ ++ I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKVVLIYRSDFLDDNKGDNKTKKLYKDIDNYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 K + + +K + I +L +E+ K I+K + + + Sbjct: 123 IMTNKRDKVSYRIKKLDNKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182 Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + ++ NE++KL +Y + I ++H+K++ I ++IN + K AI + Sbjct: 183 ENENLSYIENEVEKLCTYAM-YEEIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + +L ++F+ L + I E + E++ ++ + I P ++L Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-EGKTKEELAKELK--IHPYGCSVLMS 298 Query: 297 SLRIWNKNLVRETLH 311 + + + +++ Sbjct: 299 QSKKFTLKQIEKSIE 313 >gi|218779614|ref|YP_002430932.1| DNA polymerase III, delta subunit [Desulfatibacillum alkenivorans AK-01] gi|218760998|gb|ACL03464.1| DNA polymerase III, delta subunit [Desulfatibacillum alkenivorans AK-01] Length = 486 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC----------YPDNKIHLMD 152 +++ K ++ +II ++ K L K + + C L Sbjct: 181 QVLEKGCADNHLIITADLADKRKKLFKYI--KEHGVVVDCSVPKGNVQADKQAQAQALTV 238 Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 + + L KS+ A ++ +G D N L+KL+SY + +IT + V+ ++ Sbjct: 239 QMNKVLDARGKSMEPRAFSMIQDRIGADLRTFTNTLEKLASYVGDRPVITARDVEAVVSR 298 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 T I NA ++ L D LA A+ + I Sbjct: 299 TKEDPIFAFTNALASKNAQESLALLDRLLAGDFHPLAVAAASANHLRRFLAIK 351 >gi|87301625|ref|ZP_01084465.1| hypothetical protein WH5701_03084 [Synechococcus sp. WH 5701] gi|87283842|gb|EAQ75796.1| hypothetical protein WH5701_03084 [Synechococcus sp. WH 5701] Length = 322 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 111/327 (33%), Gaps = 14/327 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + +++G D+ I++ +L L+ + + E + S Sbjct: 2 PIHLYWGDDEAARTRAIDELISKEVDPAWHSINLTRLDGSDTAQAAQALS-EARTPPFGS 60 Query: 82 KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 +++L++ ++ L+ + + +++ S+ K + LR Sbjct: 61 GARLVLLQRSPFTSPCSAELAGQLDTCLELIPESCHLVLVSSG-KPDARLRTTKALRQRA 119 Query: 138 L----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 L + D + L+ + +++ A + L +G D +EL+KL+ Sbjct: 120 LEKSFQLPSAWDGAGQVE-LVARTARELGVTLAAGAAEALAEAIGSDSARLSSELEKLAL 178 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y E + ++ + + +A ++G AI L D L + P+ L+ Sbjct: 179 YSGEAAVQVAAV-AALVGGHSTTSL-AVGDALLEGNAGAAIALVDDLLQAGEPALRLVAS 236 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + + + +++ I + P + +++ +R + L ++ Sbjct: 237 LTSQVRGWLWVSLLESRGEQDVAVIAKAAGIG-NPKRIYVMRRQIRGRTPARLLTLLAQV 295 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQ 340 ++ + +L A+ Sbjct: 296 LEVEAALKRGAEAGEAFRDGLLLATAR 322 >gi|29832101|ref|NP_826735.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29609219|dbj|BAC73270.1| putative DNA polymerase III delta subunit [Streptomyces avermitilis MA-4680] Length = 336 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 98/282 (34%), Gaps = 11/282 (3%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124 T E+ S SLF+++K++++ N + ++ + ++++ + K Sbjct: 63 PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKSYLGAPAEEITLVLLHAGGAKGK 121 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 L + +A L + +S + EA Q L+ ++G D Sbjct: 122 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRALGRSATSEAGQALVDSIGSDLREL 180 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + + +L+ + I E V + + ++G+ A+ + L++ Sbjct: 181 ASAVSQLT--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 238 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + Q + + K+ + + + + P K + +++ +R W + Sbjct: 239 VAPVMITSALAQGVRAIGKLSSARGGRPADLARELGMS-----PWKIDRVRQQMRGWTPD 293 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 V L + + + + + ++ IA A Sbjct: 294 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVAIAGAARSRR 335 >gi|227488359|ref|ZP_03918675.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091573|gb|EEI26885.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 302 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 35/319 (10%), Positives = 100/319 (31%), Gaps = 23/319 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G D L+ + + + + + + + + + +L + + Sbjct: 3 VIVGEDDFLVERVRDIIIQRTEGNPT-------VESHHCAELTGSMVYGLVTPTLMREAR 55 Query: 85 IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 +I+ + K+V++ + + +I+ + K L +K +V + Sbjct: 56 VIVFTHGELARKEVMEAFISVAADPVDEITVILMHSGGGKQKKLLTQLKKTATVNEVK-- 113 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 P M + + ++ + Q +L +G D + +L + +T Sbjct: 114 PVKPRDRMRWVMDEFRSHNARVTPDVAQAVLEGVGSDLRELAAAIAQLV--SDNNGTVTV 171 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+ + + EI + + G+ A+ L P L + Sbjct: 172 DSVRTMYQGVAEVSGFEIADLIVSGQTAKAVASTRRALQLGEPPVRLTSAIASNITAIAC 231 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-- 321 ++ ++ + P K + L + R W+++ + + + + Sbjct: 232 LYSMRGAG---------AQVPGMPPWKADKLAKVARRWSEDSISRAVVILAELEEATKGW 282 Query: 322 KKKYLEKNIIFQTILYIAQ 340 +T+ +A+ Sbjct: 283 GNPEYSVEYAVRTLSELAR 301 >gi|170761356|ref|YP_001788281.1| DNA polymerase III subunit delta [Clostridium botulinum A3 str. Loch Maree] gi|169408345|gb|ACA56756.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 56/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + + + ++++ Sbjct: 5 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNINNDFKDLNYLQFDGSQLEEF- 61 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 62 DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 121 Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173 K + + K +K ++ I D +L +E+ K I+K + Sbjct: 122 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFNDRGKKIAKIPLKAF 177 Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + + + ++ NE++KL +Y + + I ++H+K++ I ++IN + K Sbjct: 178 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRK 236 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 AI + + + + +L ++F+ L + I E + E + ++ + I P + Sbjct: 237 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGIE-QGKTKEGLAKELK--IHPYGCS 293 Query: 293 ILQESLRIWNKNLVRETLH 311 +L + + + +++ Sbjct: 294 VLMSQSKKFTLKQIEKSIE 312 >gi|293189681|ref|ZP_06608398.1| DNA polymerase III, delta subunit [Actinomyces odontolyticus F0309] gi|292821419|gb|EFF80361.1| DNA polymerase III, delta subunit [Actinomyces odontolyticus F0309] Length = 305 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 106/322 (32%), Gaps = 19/322 (5%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G + L+ ++Q + DP +L + + I S SLF + + Sbjct: 1 MIKGPEGLLVDRALDQLRALAHEA--DP-NLERTDINAATYQAGQL-DVIASPSLFGESR 56 Query: 85 IILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++I +L T + + L + + + + + K T + + Sbjct: 57 MVIIRDLETMSDALANDLIAYAGAPAPDVWMFLAHPGGNARGKKVIDTITKATWPVIPAE 116 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 N + LI + ++ + EA+Q L+ LG D A L +L IT Sbjct: 117 PLKNDRDKLALIAADVRAARRQMDTEAQQALVDALGNDPRAMAGALAQLL--SDVSGRIT 174 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ ++ +A + G A+ LA A+ + L+ KF Sbjct: 175 LEDVRRYQAGRVEATGYDVADAAVAGNSAKALTLARHAFATGIAPQLLVTALAMKF---- 230 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + + + P + + + LR W+ + I + Sbjct: 231 RAMAKVSIGGSASALKMA-------PWQVDRARRELRGWSDASLAGAFGAIATADAETKG 283 Query: 323 KKYLEKNIIFQTILYIAQTACK 344 + I + ++ I + + Sbjct: 284 ASRDPQRAIEKALITICRLRGR 305 >gi|257454414|ref|ZP_05619676.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60] gi|257448180|gb|EEV23161.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60] Length = 339 Score = 66.9 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 19/259 (7%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVLNALEIQKNISTFWNEINST 77 + V++ +G + L + +S + ++ ++ + + E+NS Sbjct: 18 PATGVWLMHGDEDLL----SQWLIEKMSPNWRQHNMAISRMDITSAKSWQAVLA-ELNSL 72 Query: 78 SLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--NNTLRKIAEKF 134 SLF K I++ N +K+ L L + N N ++II KK ++ + +KF Sbjct: 73 SLFDDNKAIIVHGNHKPDKEALAELAQFATSNPSNCLVIISDKYDKKSQSSAFFSLCDKF 132 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-S 193 V I C+ + L+++ ++K A Q+L+A + +A+ L +LS Sbjct: 133 GQV--IECHLYQEQQREQLLQQHAQDFGLELTKPAWQMLIAQTQHNLLAAYQSLWRLSYL 190 Query: 194 YCLEDI-------LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 Y D I E + D + + ++ +A + G + AS+ P Sbjct: 191 YATTDANPPTRFVTIDESQLFDGLVSQSMFTTFDLSDAMLAGDTAQVAKILQQLKASEEP 250 Query: 247 SHALLHGFLQKFQLLEKIH 265 +L + + + + Sbjct: 251 ESLVLWMIAKDMRNILSLQ 269 >gi|168181654|ref|ZP_02616318.1| DNA polymerase III, delta subunit [Clostridium botulinum Bf] gi|237796421|ref|YP_002863973.1| DNA polymerase III subunit delta [Clostridium botulinum Ba4 str. 657] gi|182675186|gb|EDT87147.1| DNA polymerase III, delta subunit [Clostridium botulinum Bf] gi|229262924|gb|ACQ53957.1| DNA polymerase III, delta subunit [Clostridium botulinum Ba4 str. 657] Length = 343 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 131/319 (41%), Gaps = 26/319 (8%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + V + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNINNDFKDLNYVQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTAFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQIL 173 K + + K +K ++ I D +L +E+ K ISK + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIRGENLEKRVEKFFNDRGKKISKIPLKAF 178 Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + + + ++ NE++KL +Y + + I ++H+K++ I ++IN + K Sbjct: 179 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRK 237 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 AI + + + + +L ++F+ L + I E + E + ++ + I P + Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGIE-QGKTKEDLAKELK--IHPYGCS 294 Query: 293 ILQESLRIWNKNLVRETLH 311 +L + + + +++ Sbjct: 295 VLINQSKKFTLKQIEKSIE 313 >gi|167755870|ref|ZP_02427997.1| hypothetical protein CLORAM_01387 [Clostridium ramosum DSM 1402] gi|237734838|ref|ZP_04565319.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704809|gb|EDS19388.1| hypothetical protein CLORAM_01387 [Clostridium ramosum DSM 1402] gi|229382166|gb|EEO32257.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 315 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 112/305 (36%), Gaps = 26/305 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79 +F+ YG + L+ + + KK +N + N + ++ + Sbjct: 2 IFVIYGEESFLMEQKLQSLKKEYDCNED------NMNISTYRANEDSLEEVYEDLITPPF 55 Query: 80 FSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-EIKKNNTLRKI 130 + KK+++++N + L+ E+ +I + +I + + + K Sbjct: 56 LTDKKMVVLKNPYFLTTKKVKKDNNELEYFEKCLINSEEVIFVIYHVGKDFDERKKIVKN 115 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K I N L D +++ +I +A ++LL+ LG E++K Sbjct: 116 LRKQAQFFEID--KVNHYKLSDSTRQAIRRRDATIDDDALELLLSRLGDSLNNVALEVEK 173 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y IT V +++ + + +A +Q + + L Sbjct: 174 LCLYS---KHITYDIVDELVSKPLDENVFALTSAILQKDRRKMFSIYHDLMILNEEPIKL 230 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + +L+ ++ ++ + + ++I + + P + +++ + ++ N + + L Sbjct: 231 IVLIAGQMRLIYQVKLL-DRKGYNDKEIGKILG--VNPYRLKYVRQEGKDFDLNELLQCL 287 Query: 311 HKIDH 315 + Sbjct: 288 DDLSR 292 >gi|325268923|ref|ZP_08135546.1| hypothetical protein HMPREF9141_0755 [Prevotella multiformis DSM 16608] gi|324988735|gb|EGC20695.1| hypothetical protein HMPREF9141_0755 [Prevotella multiformis DSM 16608] Length = 341 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 105/287 (36%), Gaps = 24/287 (8%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M ++S KF V++ G + I ++ + ++ F+ + Sbjct: 13 MRDLKSRKFA-----------PVYMLMGDESYYIDQISDYIAEHALRPEERDFNQTICFG 61 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 + + + ++ ++I+++ + + + LE+ + + + I++ Sbjct: 62 SDSTA--VQIADMARRYPMMAEYQVIIVKEAQNIRSL-ESLEKYLKNPVKSTILVWCHKN 118 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178 K + RK A V+ + L D I+ L SI +A Q++ ++G Sbjct: 119 GKIDA--RKKAVGLAQVVGVVFESKKLRDYQLPDFIQTYLKQKNVSIDPKACQMIADHIG 176 Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 D +EL K L S + + +T + V+ + + E+ NA +Q + A + Sbjct: 177 SDLGRLTSELDKVLISLPADRLRVTPEVVEREVGVSKDFNAFELRNAIVQKDCFKANQIV 236 Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 +F ++ L FQ L +H + ++ I Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNTDQDIASA 280 >gi|307591375|ref|YP_003900174.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7822] gi|306986229|gb|ADN18108.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7822] Length = 314 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 93/243 (38%), Gaps = 20/243 (8%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87 G + LI + I F+ + + I T N + + +++ Sbjct: 3 GDNDFLISQEIQALLAQYLAPEWSLFNYNEYPPDSLNEAIITM----NQPPIGNGFRVVH 58 Query: 88 IEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK-IAEKFT-----SV 137 + + + +E+ I ++I+ +++I + + K + +K ++ Sbjct: 59 LIQCPWFGTINDDSIAQVEKEIDLLPSTTVLILTASKIDRRLKVVKMLIDKAALFKEFNL 118 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++ P ++ L+ + + +++ A + L+ +G D EL+KL ++ + Sbjct: 119 IS----PWDEGTLITQLYQMATSIGVDLTQAAAKQLIIAVGNDTRLLSGELEKLKTFVGD 174 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + +T + V ++ + I+ + A ++ + AI + S + +L + Sbjct: 175 E-AVTVESVNQLVDNRAATSID-LAKACLKQDVKTAIATLENLNNSGEAAPKILASLITL 232 Query: 258 FQL 260 F+ Sbjct: 233 FRQ 235 >gi|120613179|ref|YP_972857.1| DNA polymerase III subunit delta [Acidovorax citrulli AAC00-1] gi|120591643|gb|ABM35083.1| DNA polymerase III, delta subunit [Acidovorax citrulli AAC00-1] Length = 348 Score = 66.9 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 97/301 (32%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ +G + L E + + + S + + S S SLF Sbjct: 17 RPLYTLHGDEPLLQQEAADAIRAAARGQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I+ I + K L++I N + ++ + K Sbjct: 75 ADKQIVEIRIPSGKPGKDGGAALQQIATAAAGNEGTLTLVVLPRLDKATRTGAWFSALDR 134 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQK 190 +++ P ++ L I + L + ++ + Q + G+ +A+ E+QK Sbjct: 135 EGVSVQIDPVERVALPQWIAQRLAAQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEVQK 194 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ ++ V+ + + + ++ A + G++ + D A + Sbjct: 195 LAL-LHPPGELSWAQVEAAVLNVARYDVFKLSEAVLSGQVARMQRMLDGLQAEGEAEVLV 253 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L+++ + + + K + + + ++ L Sbjct: 254 HWALAEDIRSLKRVKDAVNAGKPLPMALRENR---VWGTKERLFERIVPRFSDAAASRLL 310 Query: 311 H 311 Sbjct: 311 Q 311 >gi|318061211|ref|ZP_07979932.1| DNA polymerase III, delta subunit [Streptomyces sp. SA3_actG] gi|318081177|ref|ZP_07988509.1| DNA polymerase III, delta subunit [Streptomyces sp. SA3_actF] gi|333027157|ref|ZP_08455221.1| putative DNA polymerase III, delta subunit [Streptomyces sp. Tu6071] gi|332747009|gb|EGJ77450.1| putative DNA polymerase III, delta subunit [Streptomyces sp. Tu6071] Length = 326 Score = 66.5 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 40/339 (11%), Positives = 112/339 (33%), Gaps = 16/339 (4%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + + + + + G ++ LI + + + + L ++Q Sbjct: 1 MARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PGG 57 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127 E+ S SLF+++K++++ N + ++ + + +++ + K L Sbjct: 58 LA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGLL 116 Query: 128 RKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + + C + + +S + EA Q L+ +G D Sbjct: 117 DAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELAA 174 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + +L+ + I E V + + ++G+ A+ + L++ + Sbjct: 175 AVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGVA 232 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + Q + I + + ++ P K + +++ +R W + V Sbjct: 233 PVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 287 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 L + + + + + I+ +A+ A Sbjct: 288 SIALRAVAEADAGVKGGGDDPEYALEKAIVTVARAARSR 326 >gi|260912718|ref|ZP_05919204.1| DNA-directed DNA polymerase III delta subunit [Pasteurella dagmatis ATCC 43325] gi|260633096|gb|EEX51261.1| DNA-directed DNA polymerase III delta subunit [Pasteurella dagmatis ATCC 43325] Length = 344 Score = 66.5 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 118/311 (37%), Gaps = 14/311 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G D L+ E + + D +++ ++A + + + S LF Sbjct: 19 KVYYLVGQDPLLLSESQDLISQFALNQGFDEKNVIQIDA---NTDWNDIFERCQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136 K+I+ + +L L+E+I + +++++ ++ K ++ + Sbjct: 76 NKQILFLNLPENLTALLQQHLQELISLLNEDVLLVLQLPKLAKATEKQQWFTEANAYEPQ 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++C L + + +I ++A Q+L + + +A + LQ LS Sbjct: 136 AILVNCQTPTIEQLPRWVLQRAKSMGLNIDEQAVQLLCYSYENNLLALKQSLQLLSL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T Q V++ + + V + ++A ++GKI A + A M LL + Sbjct: 195 PDNKLTYQRVQNSVEQSSVFTPFQWVDALLEGKINRANRILMGLKAEDMQPIILLRTLQR 254 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311 L ++ + ++ + +N + +R + + + + + Sbjct: 255 DLITLLELAKPTQKYVLTDPLPTHQLRENFDRLKVWQNRRPLFTQIFQRFTYQKLYLIFQ 314 Query: 312 KIDHRIHLARK 322 ++ A++ Sbjct: 315 QLADIERAAKQ 325 >gi|225010861|ref|ZP_03701329.1| DNA polymerase III, delta subunit [Flavobacteria bacterium MS024-3C] gi|225005069|gb|EEG43023.1| DNA polymerase III, delta subunit [Flavobacteria bacterium MS024-3C] Length = 332 Score = 66.5 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 112/317 (35%), Gaps = 18/317 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFS-LVVLNALEIQKNISTFWNEINSTSLF 80 +++ YG + I + + ++ F+ L+V + ++I ++ + Sbjct: 18 PLYLLYGEEPYYIDAIADLIEQKALAEEEKAFNQLIVYGKDALIEDI---VSQAKRYPMM 74 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF--TSVL 138 +++++I+++ + +D L+E + + I+++ K + RK K + Sbjct: 75 AERQLIVVKEAQHLSRQIDGLQEYAKHPLQSTILVLCYKYQKPDK--RKGVFKAFQKNGT 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + I + + + +L LG D E+ KLS + + Sbjct: 133 TLESKKIYDNKIPSWINDLIHRKGFTAQPAVPHLLFEFLGTDLSRIEKEIDKLSIHIEKG 192 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL-Q 256 LIT V+ I + E+ A + I A + +F + K + L Sbjct: 193 ALITPDIVEQHIGISKDYNNFELKKAIGERDILKAFKIVHYFAHNPKDNPFLMTVSILHS 252 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F + + H + + + + + + N ++ + + + V + L + Sbjct: 253 FFTQIMQYHGLTDH---NPNHVAASLGISPYFI--NEIKNAAKQYPMKRVSQILKVLKDL 307 Query: 317 IHLARKKKYLEKNIIFQ 333 K K + Q Sbjct: 308 DL---KNKGMGAPTDHQ 321 >gi|311113642|ref|YP_003984864.1| DNA-directed DNA polymerase III subunit delta [Rothia dentocariosa ATCC 17931] gi|310945136|gb|ADP41430.1| DNA-directed DNA polymerase III delta subunit [Rothia dentocariosa ATCC 17931] Length = 342 Score = 66.5 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 115/322 (35%), Gaps = 21/322 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +GS++ + + + + LV +NA T + S SLF Sbjct: 32 PVIMLHGSEE-YFASRARERLRTAFYSTYPNADLVTINASTYTAGELTL---LASPSLFG 87 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 KII +N++T + L+ + I + ++I++ + + L K + + I Sbjct: 88 TAKIIDADNVATMSEDFLNDVLSYIAAPESDIMLIMQHSGGNRGKKLIDAIRK--NHVLI 145 Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197 C P + + + +++I A ++L+A + ++ +LQ Sbjct: 146 PCKPLKAEREKTEFVTSEFRAAKRTIDPGALRLLVAATNDTAELASACAQLQ-----ADV 200 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE+ V + + +A + G A+ L LA+ LL + Sbjct: 201 AGNITEEIVNRYYGGRTEVTAFRVGDAAVTGNAAEALRLLRHALATGTEPIPLLGALAMR 260 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + + ++H ++ + ++ P + Q R + + + + Sbjct: 261 IRNIARLHHVRASAQELAREVGMA------PWQVEQAQRDGRRFTGEQIARIVQLLADAD 314 Query: 318 HLARKKKYLEKNIIFQTILYIA 339 + + + + +L IA Sbjct: 315 AQLKGEGLDPVYAVERAVLAIA 336 >gi|256825556|ref|YP_003149516.1| DNA polymerase III subunit delta [Kytococcus sedentarius DSM 20547] gi|256688949|gb|ACV06751.1| DNA polymerase III, delta subunit [Kytococcus sedentarius DSM 20547] Length = 317 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 104/305 (34%), Gaps = 20/305 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS--L 79 + + G + LI + Q ++ DP ++ + +Q T + + S L Sbjct: 6 PLVLIKGPEDLLIDRAVEQVVESARAV--DP----EVDVVRVQAEAHTPGDVAMALSPSL 59 Query: 80 FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTS 136 F ++++ N +++ D + + +++++ S K L +A Sbjct: 60 FGGGTVVVVRNFEVAGEQLGDEVAAAVADPGEGNVLVVSHRSGTKHKRV-LDAMARAHAH 118 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + +++ + ++ I +A ++L+A GGD +L Sbjct: 119 TIEAPALKRDGDK-ANFVQKEFRVARRRIDSDAVEVLVAAAGGDARTLAAACAQLI--AD 175 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T + V ++ A G+ A+ L + + ++ Sbjct: 176 TEGTVTTEEVNLYHGGKVETTGFKVAEAAFTGQRAEALRLVRHAMIGGLDPVPIVAVMAG 235 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + I ++ N ++ ++ + + +R W+ + + + Sbjct: 236 QARQ---IGLVASAGNRGSAQVAKELGMAPFMVDKAR--RMMRGWDGERLGAAVTALARC 290 Query: 317 IHLAR 321 H + Sbjct: 291 DHEVK 295 >gi|126697175|ref|YP_001092061.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9301] gi|126544218|gb|ABO18460.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9301] Length = 333 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 32/298 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D I + ++ LN + + ++ +E+ + Sbjct: 2 PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVNKALDEVLTPPFGE 60 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 +I+ ++N S + + E+I N I+++ + +K L+K+ Sbjct: 61 GYRIVTLKNNPIFTSKNEDLRTKFEKIHDNIPQNTYFILQNTKKPDSRLKSTKFLQKLIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK S+ I Y K L D E I K A ++++ ++G D N Sbjct: 121 NNLAKEKSFSLPEIWDYEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSYKLIN 176 Query: 187 ELQKLSSY-----CLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 EL K +Y + + + VK I D I +II+ +Q I +++ ++ Sbjct: 177 ELAKAKTYLSAVSSDSNSQLFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINESLIEINY 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293 L P+ L G + + ++ I + N + EKI K I ++R + Sbjct: 236 SLQKGEPALRLNAGLISQIRIHTIIKLAINSGNDNEEKICNLAGISNPKRIFFIRRKV 293 >gi|323341652|ref|ZP_08081885.1| DNA-directed DNA polymerase III delta subunit [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464077|gb|EFY09270.1| DNA-directed DNA polymerase III delta subunit [Erysipelothrix rhusiopathiae ATCC 19414] Length = 311 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 10/250 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G + L+ + K + F + + + + SLF KK Sbjct: 4 VIVGKEPSLVKSKVESIIKEY-ENQYGVFDVSHFDTRDKGFVFDHVLESAMTVSLFGDKK 62 Query: 85 IILIE-NLSTEKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +++ + K+V L E++ +++ + +I+I + + + K K V I Sbjct: 63 AVVLNTHDELIKEVEAALGELMSQSMFDVSLIVIFEKKPLVKSVIGKAIAKHARVHQI-- 120 Query: 143 YPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 D + L L+++ + +S A LL +G D EL KLS I Sbjct: 121 -KDMDVGQLSLLMKQEIDRLDFKMSNPAMVELLDRVGNDVARLYQELNKLSLV---GEAI 176 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 ++HV+ ++ I I NA ++ I A + LA K+ ALL + + Sbjct: 177 EQEHVRKLVSKNIDEDIFAISNALLEKNISKAFSVYQNLLAQKVDPLALLGLIGSSIRKI 236 Query: 262 EKIHIIKECS 271 +I + E Sbjct: 237 YQISALYEQG 246 >gi|282861826|ref|ZP_06270890.1| DNA polymerase III, delta subunit [Streptomyces sp. ACTE] gi|282563642|gb|EFB69180.1| DNA polymerase III, delta subunit [Streptomyces sp. ACTE] Length = 329 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 101/285 (35%), Gaps = 14/285 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G + L+ + Q + D + L + ++Q T E+ S SLF+ Sbjct: 14 PVTLAVGQEDLLLDRAVQQVVAAARASDADT-DVRDLTSDQLQ--PGTLA-ELTSPSLFA 69 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++K++++ N + ++ + ++++ + K L + + +A Sbjct: 70 ERKVVIVRNAQDISADTIKDVKAYLSAPAEEITLVLLHAGGAKGKGLLDAVRKSGAREVA 129 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 L + +S + EA Q L+ ++G D + + +L+ + Sbjct: 130 CPRTTKPAERL-TFVRSEFRALGRSATPEACQALVDSIGSDLRELASAVSQLT--ADVEG 186 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I E V + + ++G+ A+ + L++ + + Q Sbjct: 187 TIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVAPVLITSALA---Q 243 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + I + + ++ P K + +++ +R W + Sbjct: 244 GVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 286 >gi|297626067|ref|YP_003687830.1| DNA polymerase III, delta subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921832|emb|CBL56392.1| DNA polymerase III, delta subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 341 Score = 66.5 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 114/331 (34%), Gaps = 10/331 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + +GS++ L+ E + ++ LV L ++ + F E + SLF+ Sbjct: 14 VTLVHGSEQ-LLSERAVAALRKRAMAEEPGLQLVELVGGDMS--PADFV-EASGGSLFAD 69 Query: 83 KKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++I S + +D L +I+ K L K + + + Sbjct: 70 HSLVIITGAESMVPESVDALVAFAGAPSPEVGVIVVHPGGNKGRGLVDKLRKAKAGV-VE 128 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L ++ + + +A Q L+ +G D A + +L+S + + Sbjct: 129 VVAPKAWELPKFVQAEARAARVGMESDAAQTLVDAVGNDLRALAGAVSQLASDWAGE-RL 187 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + + + + + +A + G+ A+ + L + + + L Sbjct: 188 SSEMISRYFQGRAEVTSFAVSDAVLAGQTGQALERLRWALDLGVAPVLVTSALANGLRSL 247 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + ++ +S ++ + P K L R+W++ V L + + Sbjct: 248 GR-YLDVRAERMSDIEMSRIVGVP--PWKVKTLARQSRLWSETAVARGLIALSRADAAVK 304 Query: 322 KKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 + Q IL + + + ++R+ Sbjct: 305 GAATDAGFALEQLILALDHARRDDASGHRRS 335 >gi|50365185|ref|YP_053610.1| hypothetical protein Mfl368 [Mesoplasma florum L1] gi|50363741|gb|AAT75726.1| unknown protein [Mesoplasma florum L1] Length = 319 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 126/310 (40%), Gaps = 28/310 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ Y D L+ + +N+ KN+ + + + I +IS + +N+ SLF + Sbjct: 1 MYFIYSEDHFLLTKTVNKLVKNLL--TEKEYEVENYSL--IYNDISEIYTSLNTFSLFGE 56 Query: 83 KKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAE 132 KI++I + S + + I+++ ++++I N I K + K E Sbjct: 57 PKILIISDAWFATEEKISLHRNYSEEALYRILESKTDNVVIFTLNNERISKRLKIAKYIE 116 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + V + +N+ +++ I+ +KSI+ + ++ D NEL KLS Sbjct: 117 ENLEVTNVKTMQENE--VLNYIKAFFTRNEKSITDHDAAFIFQSIPKDMQTLTNELTKLS 174 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---HA 249 +E +IT +K+ + I E+ NA + + + L +L A Sbjct: 175 --HIESDVITLDDIKNNLSKYIDNDIFELSNAFVNNETKTFLKLYKDYLLMNDDISKLIA 232 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLRIWNKNLVRE 308 LL + F+ + + I E+I+Q T+ P + + + L I N + Sbjct: 233 LLSSTVVFFRDVNVMKQQ----GIRNEEIVQITKA--HPYRVKIAISNKLNIRELNDKIK 286 Query: 309 TLHKIDHRIH 318 L+ I + Sbjct: 287 LLYYIQQGVL 296 >gi|257438235|ref|ZP_05613990.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii A2-165] gi|257199312|gb|EEU97596.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii A2-165] Length = 342 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 41/331 (12%), Positives = 111/331 (33%), Gaps = 23/331 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ FY S++ L+ + ++ + +S + VL+ I + S F Sbjct: 16 PVYYFYSSERYLVRQAVSAAVRILSADTDE--ETTVLDGA--APEIEQLIMAAGTISFFG 71 Query: 82 KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133 ++++++ L LEE+ + ++ N ++++ + +++K +K+ Sbjct: 72 TRRVVVLPELDPAAYGDKDLEELCSTLSSLENAVVVLGSVFELERSKLKTGKRAQKLI-- 129 Query: 134 FTSVLAISCYPDNKI----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + L ++ E ++ + A LL G D NE+ Sbjct: 130 -AECKKLGFVEELSKPKPYELKMMLIERAKAQDTTLPEGAAAALLERCGEDPFLLENEVD 188 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL + +T V ++ + + E+I A L + A Sbjct: 189 KLCALS-GYQTVTAAMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPIA 247 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRE 308 + + + L ++ + S+ + + K + + + + + Sbjct: 248 ITGAMIGSYVDLYRVKLGA-SKRKSYAAVFKDFGYKGSDYRLKRSAETA-SHYTLGQLET 305 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 L + + + + ++ + +A Sbjct: 306 CLQVLLDLDKSLKSQPVDVQTLLEAALCRLA 336 >gi|296269127|ref|YP_003651759.1| DNA polymerase III subunit delta [Thermobispora bispora DSM 43833] gi|296091914|gb|ADG87866.1| DNA polymerase III, delta subunit [Thermobispora bispora DSM 43833] Length = 325 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 42/310 (13%), Positives = 97/310 (31%), Gaps = 14/310 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 ++ V + G ++ L + + + + L E + Sbjct: 3 PDMANPAPVTLIIGDEEFL-ADRAIRATVAQARGTDPGIEVHELAGGE--AEPGDLA-RV 58 Query: 75 NSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 S SLF + ++LI + +K+V++ + + +I+ + K L +K Sbjct: 59 ASPSLFGDRSVVLIRSAQELKKEVINEVLAYAADPAEDVHLIVAHDGGAKGKALVDGLKK 118 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + P +D I ++I+ A Q LL +G D +L Sbjct: 119 AGAHVITVAKPTKPGERLDFIRGEFERAGRTITPAAAQALLDAVGSDLRELAAACSQLVF 178 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + I E V + I + I+GK+ A+ + LA+ + ++ Sbjct: 179 DTPGEK-IDEAAVARYYRGRAEVTGFSIADLAIEGKLGEALEQLRWALATGVAPVLIVSA 237 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII--PMKRNILQESLRIWNKNLVRETLH 311 + + + + ++ P K ++ L W + + Sbjct: 238 LA------NGLRALAKVGGAPRNLRGGQLASHVGLPPWKIERVRRQLAGWGPEGLSTAMQ 291 Query: 312 KIDHRIHLAR 321 + + Sbjct: 292 AVAVADEQVK 301 >gi|25028803|ref|NP_738857.1| hypothetical protein CE2247 [Corynebacterium efficiens YS-314] gi|259507868|ref|ZP_05750768.1| DNA polymerase III, delta subunit [Corynebacterium efficiens YS-314] gi|23494089|dbj|BAC19057.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164661|gb|EEW49215.1| DNA polymerase III, delta subunit [Corynebacterium efficiens YS-314] Length = 328 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 108/308 (35%), Gaps = 29/308 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTS 78 V + G D+ L E + I P + V+ A E+ + + + S S Sbjct: 15 VHLIIGDDEYL-AERA-RLNITAQIREASPEGEALPVTVMRAGEVSE--GELLD-LLSPS 69 Query: 79 LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 LF + +++++ + + ++ L+ I H+III S +++ K Sbjct: 70 LFGEDRVVVLTHMDQAGQEPANLVLKAAIDPAPGIHMIIIHSG----GGRTKQMVPKLKK 125 Query: 137 VLAI---SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + + D L + + ++ + LL +G D + + +L Sbjct: 126 IAVVHEAAKLKD--RELPAWVMQEFRNHGAKVTPDVVHSLLEGVGSDLRELASAVAQLV- 182 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 D +T + ++ + ++ + G++ A+ L + AL Sbjct: 183 -SDTDGNVTVEKIRTYYRGVAEVSGFDVADLACAGQVSKAVASTRRALQLGVKPAALSAA 241 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---L 310 K + +++ + I ++ +++ + + R W+ V E + Sbjct: 242 LSMKVGQIARLYSTR--GRIDSGRLAGVLGVPPFVVEK--VAKQARTWSGESVSEAVILM 297 Query: 311 HKIDHRIH 318 ++D + Sbjct: 298 AELDAAVK 305 >gi|226950394|ref|YP_002805485.1| DNA polymerase III, delta subunit [Clostridium botulinum A2 str. Kyoto] gi|226844570|gb|ACO87236.1| DNA polymerase III, delta subunit [Clostridium botulinum A2 str. Kyoto] Length = 343 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173 K + + K +K ++ I D +L +E+ K ISK + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFSDRGKKISKIPLKAF 178 Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + + + ++ NE++KL +Y + + I ++H+K++ + I ++IN + K Sbjct: 179 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYENIKDEDIFDLINFISEKKPRK 237 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 AI + + + + +L ++F+ L + I E + E + ++ + I P + Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEDLAKELK--IHPYGCS 294 Query: 293 ILQESLRIWNKNLVRETLH 311 +L + + + +++ Sbjct: 295 VLMSQSKKFTLKQIEKSIE 313 >gi|261343551|ref|ZP_05971196.1| DNA polymerase III, delta subunit [Providencia rustigianii DSM 4541] gi|282568700|gb|EFB74235.1| DNA polymerase III, delta subunit [Providencia rustigianii DSM 4541] Length = 344 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 113/308 (36%), Gaps = 23/308 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ +GS+ LI E + ++ F +LE + ++ + SLF+ + Sbjct: 21 YLIWGSEPLLIQESQDAIRQAA---LQQGFEEHFTFSLEQNTDWDEIFSLCQALSLFASR 77 Query: 84 KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT------ 135 +++ + + + L ++ + + + + + L K E Sbjct: 78 QMLTLFLPENGPNAAMAEKLLQLAGLLHPDLL------LVLRGHKLTKAQENSAWFKAIS 131 Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + ISC L + + + ++ EA Q+L G+ + L++LS Sbjct: 132 QDGVYISCLTPEYQRLPQWVSKRASQMRLTLETEANQLLCYCYEGNLLGLAQALERLSL- 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D +T V+ + D+ ++A + GK + + + + LL Sbjct: 191 LYPDGKLTYPRVESAVNDSAHFTPYHWVDAVLAGKSRRSWHILEQLEREDIEPVILLRAI 250 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 ++ L+ + ++ S + + + + + +R +L E+++ + ++ L + Sbjct: 251 QRELMLMITLK--RQSSTTPLKTLFDQHK--VWQNRRGLLGEAIQRLSLYQLQSALMLLT 306 Query: 315 HRIHLARK 322 ++ Sbjct: 307 QAEIHTKQ 314 >gi|291533541|emb|CBL06654.1| DNA polymerase III, delta subunit [Megamonas hypermegale ART12/1] Length = 338 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 118/331 (35%), Gaps = 27/331 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + L + K + + + + + ++S+ FS+ Sbjct: 18 VYLITGEELYL----AENYLKKLLTLLNPQNDEEAVQYFDSTADTKAILQALDSSPFFSE 73 Query: 83 KKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAE 132 II+ ++L + +K+ + I I+I++ +I K L K E Sbjct: 74 HNIIIAKDLKIFQDKLSAKDKEDEQLFLDYIANMPDYSILILQYNLGKIDKRRKLIKTIE 133 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG----DRIASRNEL 188 KF +++ C ++ D + L +EA L + EL Sbjct: 134 KFGTIV--ECEAIAYWNINDWLNSRLRELNLRFDREAYAYFLEAIKSMEKISLGFLDQEL 191 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 QKL+ Y + LI Q ++D + + A I A+ L + + Sbjct: 192 QKLTLY-PQKTLINRQFLEDNFSSIPEISTFRLWEALGNKDIATALELFTIQQQAGIHPL 250 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 LL ++ L + I S ++I + + ++ + + + ++ + +++ Sbjct: 251 RLLKFLARQIDQLWHVKIYL-SEGQSTKQIASILKLHPFITEK--IIKQTQNFSLDKIQQ 307 Query: 309 TLHKIDHRIHLAR---KKKYLEKNIIFQTIL 336 + I + + + L +N++ + L Sbjct: 308 MIIDIADADYKLKTGSNEPALIENLLIKFCL 338 >gi|118586843|ref|ZP_01544277.1| DNA-dependent DNA polymerase III, delta subunit [Oenococcus oeni ATCC BAA-1163] gi|118432675|gb|EAV39407.1| DNA-dependent DNA polymerase III, delta subunit [Oenococcus oeni ATCC BAA-1163] Length = 331 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 41/311 (13%), Positives = 117/311 (37%), Gaps = 22/311 (7%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKKKIILIENL----- 91 QF + + + F ++ I ++++ S + ++I+++EN Sbjct: 29 TEQFSNLLENSIDENFRAWDFVRTDVNDTGIKEVLADVSTLSFNASRRIVIVENPLFLTA 88 Query: 92 --STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSVLAISCYPDN 146 S EK + L + + + +II + K+ T++ + + + + P + Sbjct: 89 KNSLEKSEENLLLKYLNNPEGGNSLIINAVNFSLDKRKKTVKSLIKTAEN---VDFKPLD 145 Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + ++ ++++ L+ SI L + N L KL Y ++ +I + + Sbjct: 146 ERQILQIVKKRFLVADISIEDAVLNYYFRRLAFNLRLIINNLDKLLLY-GQNHIIDKHVI 204 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 +I ++I A Q K + + + + + L +++LL + Sbjct: 205 DFLIAPESTESAFDLIEAINQKKPGKVLKIYEELIDRGEAPIRINALLLSQYRLLIQAKS 264 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 +K ++ + +++ +I P + + + + + + + + + L Sbjct: 265 LK-LNDQNLSRLL-----HIHPYRAKLANQLASLKTFGELSNSFLNLSDIELKLKSTR-L 317 Query: 327 EKNIIFQTILY 337 + ++F+ L Sbjct: 318 DPKMLFEIFLS 328 >gi|32472195|ref|NP_865189.1| hypothetical protein RB2871 [Rhodopirellula baltica SH 1] gi|32397567|emb|CAD72873.1| hypothetical protein RB2871 [Rhodopirellula baltica SH 1] gi|327541401|gb|EGF27940.1| DNA polymerase III, delta subunit [Rhodopirellula baltica WH47] Length = 349 Score = 66.1 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 96/296 (32%), Gaps = 24/296 (8%) Query: 68 STFWNEINSTSLF----SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIK 122 S +++ + SLF K+ +++ + +E+ + +++ + Sbjct: 57 SDLRDDLATASLFDFDGGDKRTLVVRSADKFLSNHRPEIEKYVSAPGDATRFVLELESLA 116 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL------LIGQKSISKEAKQILLAN 176 N + K +K ++A + D K+ + + ++ A L+ Sbjct: 117 SNTRVYKAVDKSHLLVACTSATDAKLGITAASRRKFLTSFVADRHKTQLAPAAADALVEM 176 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 LG + E+ KL+ Y I E V+D++ + +I +A G A+ Sbjct: 177 LGEEIGMLDTEIAKLALYVDVGGKIEEPLVRDVVAGWQGKTVWQITDAIAAGDAAEALRQ 236 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF-------EKIIQKTEKNIIPM 289 D + + ALL + L E S + Sbjct: 237 LDKLFSGGQRAIALLPQIAWSLRRLGMTTAAIEFRERSGRPWQFEDALAAGGIRRGFEVQ 296 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE---KNIIFQTILYIAQTA 342 + L+ + ++ L + + E + ++ Q IL +A+ A Sbjct: 297 SAK---KQLQSIGRERAKQLLPWLLDADLRLKGTHSAEGRDRFLLEQLILKLARQA 349 >gi|225621198|ref|YP_002722456.1| D polymerase III subunit delta [Brachyspira hyodysenteriae WA1] gi|225216018|gb|ACN84752.1| D polymerase III, delta subunit [Brachyspira hyodysenteriae WA1] Length = 338 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 21/272 (7%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL- 61 IE K K F H ++I G ++ I ++ D +N Sbjct: 9 EIEFQKVKDNYIKEPF-KHCIYILTGKERLFKKAFIAAMHSSMFPDEGD----SEMNYSV 63 Query: 62 --EIQKNISTFWNEINSTSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118 + I E+ T F K ++I+I + + + I+I+++ Sbjct: 64 FYDKNDAIGFTPLEVADTPPFGSKLRLIVIYKYN---NFQEDFLDYCSNPSKTSIVILET 120 Query: 119 NEIKKNNTLRKIAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + + + K K + I PD LI ++ K IS EA + L+ Sbjct: 121 ENSLEEDPIYKYFSKKKDINNIYFIDFPLPDE-KDFRGLINAYIIKQGKKISSEAIEYLI 179 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 N+ D + +EL K+ SY + + + + D + I + ++A + + Sbjct: 180 NNINLDYDSLYSELGKICSY-NDKEYLNVEDIADFTYVSKNRNIFDFLDAVFERDRRKSF 238 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 + S L+ + F + + I Sbjct: 239 SIMHRLDQDASSSLTLM---MNNFMAIYYMKI 267 >gi|206901918|ref|YP_002250827.1| DNA polymerase III, delta subunit [Dictyoglomus thermophilum H-6-12] gi|206741021|gb|ACI20079.1| DNA polymerase III, delta subunit [Dictyoglomus thermophilum H-6-12] Length = 328 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 123/323 (38%), Gaps = 18/323 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++F G +K L+ E + + +K + V A EI + + S L Sbjct: 17 PVYLFTGEEKFLMEEALIELRKARFKDAN----YVAFFADEITWD--NIIPYLESPPLLG 70 Query: 82 KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTSV 137 +++++ + K + + +++ K + N ++ +N E K + K V Sbjct: 71 -TQLVVVRHAQELKDQNMPKKLDLLFKKLTNTCVVFMANAEEEKPKKISYAKYIPPEGIV 129 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 D L I+E KSI +E+ L N E+ K+ ++ E Sbjct: 130 EFTKFRAD---ALRKWIKEKFQERNKSIDEESVYFLSTNYSDKMGVLMQEIDKICAFVGE 186 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +T + +K ++ + ++A ++ A D + +L +++ Sbjct: 187 KESVTIEDLKKVLSTQ-EVAFYTFLDALLRRDFLLAFSGIDTLWNEGVYPQVILEIVIKQ 245 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L +I+ + S E+I K + + +K++I ++L + + E + Sbjct: 246 MRQLLRINALL-KEGYSSEEIANKLDLHPFVVKKSI--DALTKYTAAELMEIYFLLRQVD 302 Query: 318 HLARKKKYLEKNIIFQTILYIAQ 340 + ++ +I + +L + + Sbjct: 303 IEYKTTAKDQRILIEKVLLKLGR 325 >gi|84496875|ref|ZP_00995729.1| putative DNA-binding protein [Janibacter sp. HTCC2649] gi|84383643|gb|EAP99524.1| putative DNA-binding protein [Janibacter sp. HTCC2649] Length = 331 Score = 66.1 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 103/321 (32%), Gaps = 12/321 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G ++ L E + ++ ++ L A + +S SLF Sbjct: 16 PLVLISGPEQVL-AERGLAETVQLIKEHNPDVEVIRLYASAYE--PGELMVH-SSPSLFG 71 Query: 82 KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K +++ +L ++ L + + +++ + + +K + L Sbjct: 72 GDKAVVVHDLDEATDELQQDLLAYLAAPPEDVTLVVTHKGGNRGKKVLDTLKKARARLID 131 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + D ++ + EA Q L+ +G D + Q+L Sbjct: 132 APAIKTDRDKADFAMNEFRRAKRRATGEAVQALVDAIGKDLRELASACQQLI--ADTTGT 189 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I EQ V ++ +A + G A+ L LA + ++ Q+ + Sbjct: 190 IDEQVVLTYHGGKVEATGFKVADAAVAGDAGEALRLLRHALAVGVDPVPIVAVLAQQIRQ 249 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L K+ + + + P + + + SL+ W + +L + Sbjct: 250 LIKVGSAGRGRSNDLARDLGMA-----PWQVDKARRSLQGWTAEALARSLQAVAAADFEV 304 Query: 321 RKKKYLEKNIIFQTILYIAQT 341 + + + +L I + Sbjct: 305 KGGGRDPVYAVERAVLTITRE 325 >gi|323140378|ref|ZP_08075308.1| DNA polymerase III, delta subunit [Phascolarctobacterium sp. YIT 12067] gi|322415134|gb|EFY05923.1| DNA polymerase III, delta subunit [Phascolarctobacterium sp. YIT 12067] Length = 356 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 27/296 (9%) Query: 50 HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL------------------ 91 P + + + N+S +NS F K +I +++ Sbjct: 48 DTPEADREITVFDKDTNLSGLQAAVNSYPFFCGKSLIFLKDEKLWAAKPAKANSAADAQD 107 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151 T+ K ++ L I+ +++I S ++ K L K + L C + L Sbjct: 108 DTDSKKMEQLAAIVSDVPDYCLLVISSKKMDKRTKLYKQLKAS--ALICPCERIKERDLD 165 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGG-----DRIASRNELQKLSSYCLEDILITEQHV 206 D + +++A + + + E+ KL+ Y TE V Sbjct: 166 DWLYAQAAAYGAHFTRDALAAISEYIEPVKEEIPLDLLQQEIGKLAIYASGRREWTEDDV 225 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++ + N + GK+ + L K ++ L F+L + + Sbjct: 226 LNVFALLPNASSFALTNYIMAGKLKQCLELL--ASERKHGTYILPLSATVAFKLRQVLRY 283 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 ++ +K I + P L+ R +++ + E L + R+ Sbjct: 284 LELKRRGYDQKGIMEELGMRSPYAYRFLERDSRRFDEKRLTEALLGLSDMNIKLRQ 339 >gi|52841576|ref|YP_095375.1| DNA polymerase III, delta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628687|gb|AAU27428.1| DNA polymerase III, delta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 341 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H + + G D LI E +N K + + ++ + + E E N+ SLF Sbjct: 17 HHLNVLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + I I + + + L E + + III++ + L+ + +++ Sbjct: 74 YQTVILTIFFDKKTIDTTGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ P + + I E L + S +++ G+ +A+ ++K++ Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LIT + + D + E+I++ + G AI + +K +L Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 Q + + + + + + I + N+ Q +++ N L+++ Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAIKRLNPLLLQQ 298 >gi|300741549|ref|ZP_07071570.1| DNA polymerase III, delta subunit [Rothia dentocariosa M567] gi|300380734|gb|EFJ77296.1| DNA polymerase III, delta subunit [Rothia dentocariosa M567] Length = 342 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 115/322 (35%), Gaps = 21/322 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +GS++ + + + + LV +NA T + S SLF Sbjct: 32 PVIMLHGSEE-YFASRARERLRTAFYSTYPNADLVTINASTYTAGELTL---LASPSLFG 87 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 KII +N++T + L+ + I + ++I++ + + L K + + I Sbjct: 88 TAKIIDADNVATMSEDFLNDVLSYIAAPESDIMLIMQHSGGNRGKKLIDAIRK--NHVLI 145 Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197 C P + + + +++I A ++L+A + ++ +LQ Sbjct: 146 PCKPLKAEREKTEFVTSEFRAAKRTIDPGALRLLVAATNDTAELASACAQLQ-----ADV 200 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE+ V + + +A + G A+ L LA+ LL + Sbjct: 201 AGNITEEIVNRYYGGRTEVTAFRVGDAAVTGNAAEALRLLRHALATGTEPIPLLGALAMR 260 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + + ++H ++ + ++ P + Q R + + + + Sbjct: 261 IRNIARVHHVRASAQELAREVGMA------PWQVEQAQRDGRRFTGEQIARIVQLLADAD 314 Query: 318 HLARKKKYLEKNIIFQTILYIA 339 + + + + +L IA Sbjct: 315 AQLKGEGLDPVYAVERAVLAIA 336 >gi|54294234|ref|YP_126649.1| hypothetical protein lpl1299 [Legionella pneumophila str. Lens] gi|53754066|emb|CAH15539.1| hypothetical protein lpl1299 [Legionella pneumophila str. Lens] Length = 341 Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 109/286 (38%), Gaps = 10/286 (3%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G D LI E +N K + + ++ + + E E N+ SLF + Sbjct: 21 VLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLFYQTV 77 Query: 85 I--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 I I + + + L E + + III++ + L+ + +++ I+ Sbjct: 78 ILTIFFDKKTIDTMGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALIIIA- 135 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 P + + I E L + S +++ G+ +A+ ++K++ LIT Sbjct: 136 QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPGTLIT 195 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + + D + E+I++ + G AI + +K +L Q + Sbjct: 196 PYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT---QEIR 252 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 + + + I + I + N+ Q +++ N +L+++ Sbjct: 253 TLLQLLFLMQQKMDIKIASNQLKIWTQRVNLYQSAVKRLNTSLLQQ 298 >gi|254525410|ref|ZP_05137462.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9202] gi|221536834|gb|EEE39287.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9202] Length = 333 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 114/298 (38%), Gaps = 32/298 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D I + ++ LN + + + ++E+ + Sbjct: 2 PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVKKAFDEVLTPPFGD 60 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 +I+ ++N + + + E+I N +I+++ + +K L+K+ Sbjct: 61 GYRIVTLKNNPIFTAKNEDLRTKFEKIHDNIPQNTYLILQNTKKPDSRLKSTKFLQKLIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK S+ I + K L D E I K A ++++ ++G D N Sbjct: 121 NNLAKEKSFSLPDIWDFEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176 Query: 187 ELQKLSSY--CLEDIL-----ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 EL K +Y L + + VK I D I +II+ +Q I +++ ++ Sbjct: 177 ELAKAKTYLSALSNDSKSKLFLKSIDVKKIFSDNQS-NIFKIIDLLLQKNINESLIEINY 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293 L P+ L G + + ++ I + N + +KI K I ++R + Sbjct: 236 CLQKGEPALRLNAGLISQIRIHAIIKLAVNSGNDNAKKICNLAGISNPKRIFFIQRKV 293 >gi|315604673|ref|ZP_07879736.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315313685|gb|EFU61739.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 331 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 107/326 (32%), Gaps = 21/326 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + GS+ L+ ++Q DP +L + + + I S SLF Sbjct: 24 PIVLIKGSEGLLVDRALDQL--RFLAHQADP-NLERTDIVAATYQAGQI-DVIASPSLFG 79 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + ++I+I +L T + L + + + + + K + Sbjct: 80 ESRMIIIRDLETMSDALAADLIAYASAPAPDVWLFLAHPGGNARGKKVIDAITKAKWPVI 139 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + N + LI + ++ + EA Q L+ LG D A L +L Sbjct: 140 PAEPLKNDREKLALIASDVRSARRQMDNEAMQALVDALGNDPRAMAGALAQLL--SDVSG 197 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT + V ++ +A + G A+ L A+ + L+ KF+ Sbjct: 198 RITLEDVCRYQAGRVEATGYDVADAAVAGHSAKALTLTRHAFATGIAPQVLVAALAMKFR 257 Query: 260 LLEKIHIIKECSN-ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + K+ I S+ + + LR W+ N + I Sbjct: 258 AMAKVSIGGGASSLKMAPWQVDRAR------------RELRGWSDNSLAAVFGAIATADA 305 Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344 + + + I + I+ I + + Sbjct: 306 ETKGESRDPQRAIEKAIITICRLRGR 331 >gi|227542972|ref|ZP_03973021.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227181194|gb|EEI62166.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 302 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 97/307 (31%), Gaps = 21/307 (6%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G D L+ + + + + + + + + + +L + + Sbjct: 3 VIVGEDDFLVERVRDIIIQRTEGNPT-------VESHHCAELTGSMVYGLVTPTLMREAR 55 Query: 85 IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 +I+ + K+V++ + + +I+ + K L +K +V + Sbjct: 56 VIVFTHGELARKEVMEAFISVAADPVDEITVILMHSGGGKQKKLLTQLKKTATVNEVK-- 113 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 P M + + ++ + Q +L +G D + +L + +T Sbjct: 114 PVKPRDRMRWVMDEFRSHNARVTPDVAQAVLEGVGSDLRELAAAIAQLV--SDNNGTVTV 171 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V+ + + EI + + G+ A+ L P L + Sbjct: 172 DSVRTMYQGVAEVSGFEIADLIVGGQTAKAVASTRRALQLGEPPVRLTSAIASNITAIAC 231 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 ++ ++ + P K + L + R W+++ + + + + Sbjct: 232 LYSMRGAG---------AQVPGMPPWKADKLAKVARRWSEDSISRAVVILAELEEATKGW 282 Query: 324 KYLEKNI 330 E ++ Sbjct: 283 GNPEYSV 289 >gi|78186148|ref|YP_374191.1| DNA polymerase III, delta subunit [Chlorobium luteolum DSM 273] gi|78166050|gb|ABB23148.1| DNA polymerase III, delta subunit [Chlorobium luteolum DSM 273] Length = 346 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 26/227 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLF 80 V+ F+G + L E + + + +L +I + +F Sbjct: 15 PVYFFHGPESFLKEEFTALIRSTAFPDEAEAAANTHILYGPDIT--PGELVARASEYPMF 72 Query: 81 SKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + +++I++ +K+ + I++ + ++ K K Sbjct: 73 TPRQLIVVRQFDKIKKPVGKDQQKQHEMKFAGYMKNPAEFTILVFDAEQLDK-----KDV 127 Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 +K L S D L EA + A + E Sbjct: 128 DKPPYSLLKSFRHDFPLLKTPDLFAAARA--HEAGWEFDPEALKAFTAYIQPSSREICQE 185 Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 ++KL++Y + IT V + + + + E+ A + Sbjct: 186 IEKLTTYASSRQGERRITAADVYECVGISKTYNVFELEKAVAGRNLR 232 >gi|256003374|ref|ZP_05428365.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM 2360] gi|281417760|ref|ZP_06248780.1| DNA polymerase III, delta subunit [Clostridium thermocellum JW20] gi|255992664|gb|EEU02755.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM 2360] gi|281409162|gb|EFB39420.1| DNA polymerase III, delta subunit [Clostridium thermocellum JW20] gi|316940203|gb|ADU74237.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM 1313] Length = 336 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 112/328 (34%), Gaps = 33/328 (10%) Query: 22 FVFIFYGSDK-------GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 +++FYG ++ G I E+I D L + +E + S Sbjct: 17 KLYLFYGEEEYLKKFYLGKIEEIILS---------RDQTGLNKI-VIEGKAEASKIIEAC 66 Query: 75 NSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + F++KK+++++ + D L + + ++ I Sbjct: 67 ETMPFFAEKKLVVVKKSELFNSKKSGSSNNKNDELITYLQNIPEHTCLVFYEENIDNRLK 126 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + +K+ V+ L+ + K+I + L+ N Sbjct: 127 ITSAVKKYGMVVEFPFQK--PAELVKWAIKVFKSYGKAIDENTASYLIDTCEEGMTEILN 184 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E+ K+ Y E +T +K + + I ++I+A + K+ A+ L + + K P Sbjct: 185 EINKVVLYLGESQKVTVDSIKKVCTKSIKSRIFDLIDAIAERKLDLALKLLNDMIILKEP 244 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 +L ++ + L ++ + + ++ K I P + ++ + Sbjct: 245 MPKILFMIAKQLKQLLEL-KLLCSKGMDAKEACSKMG--INPYAAKKMVRQTDCFSLEKL 301 Query: 307 RETLHK---IDHRIHLARKKKYLEKNII 331 +E + + +D I + I+ Sbjct: 302 KEAIRQALELDLSIKTGQINDRTAVEIL 329 >gi|125973555|ref|YP_001037465.1| DNA polymerase III, delta subunit [Clostridium thermocellum ATCC 27405] gi|125713780|gb|ABN52272.1| DNA polymerase III, delta subunit [Clostridium thermocellum ATCC 27405] Length = 342 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 112/328 (34%), Gaps = 33/328 (10%) Query: 22 FVFIFYGSDK-------GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 +++FYG ++ G I E+I D L + +E + S Sbjct: 23 KLYLFYGEEEYLKKFYLGKIEEIILS---------RDQTGLNKI-VIEGKAEASKIIEAC 72 Query: 75 NSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + F++KK+++++ + D L + + ++ I Sbjct: 73 ETMPFFAEKKLVVVKKSELFNSKKSGSSNNKNDELITYLQNIPEHTCLVFYEENIDNRLK 132 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + +K+ V+ L+ + K+I + L+ N Sbjct: 133 ITSAVKKYGMVVEFPFQK--PAELVKWAIKVFKSYGKAIDENTASYLIDTCEEGMTEILN 190 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E+ K+ Y E +T +K + + I ++I+A + K+ A+ L + + K P Sbjct: 191 EINKVVLYLGESQKVTVDSIKKVCTKSIKSRIFDLIDAIAERKLDLALKLLNDMIILKEP 250 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 +L ++ + L ++ + + ++ K I P + ++ + Sbjct: 251 MPKILFMIAKQLKQLLEL-KLLCSKGMDAKEACSKMG--INPYAAKKMVRQTDCFSLEKL 307 Query: 307 RETLHK---IDHRIHLARKKKYLEKNII 331 +E + + +D I + I+ Sbjct: 308 KEAIRQALELDLSIKTGQINDRTAVEIL 335 >gi|193211940|ref|YP_001997893.1| DNA polymerase III subunit delta [Chlorobaculum parvum NCIB 8327] gi|193085417|gb|ACF10693.1| DNA polymerase III, delta subunit [Chlorobaculum parvum NCIB 8327] Length = 346 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 88/252 (34%), Gaps = 23/252 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80 V+ F G + L E+ Q K ++ + + + ++L ++ + + + +F Sbjct: 15 PVYFFQGPESWLKEEIETQLKASLFPSESEAALNTIMLYGPDVT--LGQIISAASEYPMF 72 Query: 81 SKKKIILIENLSTEKKVL---------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++KK++++ KKV + L + ++++ + ++ K K Sbjct: 73 TEKKLVVVRQFDKLKKVTGKTESLHQEESLVRYLANPASFAVLVLDAEQVDK-----KEL 127 Query: 132 EKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 EKF S D H E +A + + E++ Sbjct: 128 EKFPYKQLKSFRHDFPAVKHPDVFAAERAREAGWEFDPDALKTFAGYIEPSSRLICQEIE 187 Query: 190 KLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 KL+ Y + IT V + + + E+ A + + +A + + Sbjct: 188 KLTLYVTDKRTERRITLDDVCQCVGISKKYNVFELEKALVGKNLRLCSGIALMIMEQEGQ 247 Query: 247 SHALLHGFLQKF 258 L++ ++ F Sbjct: 248 KEGLMN-IVRYF 258 >gi|157414253|ref|YP_001485119.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9215] gi|157388828|gb|ABV51533.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9215] Length = 333 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 114/298 (38%), Gaps = 32/298 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D I + ++ LN + + + ++E+ + Sbjct: 2 PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVKKAFDEVLTPPFGD 60 Query: 82 KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 +I+ ++N + + + E+I N +I+++ + +K L+K+ Sbjct: 61 GYRIVTLKNNPIFTAKNENLRTKFEKIHNNIPQNTYLILQNTKKPDSRLKSTKFLQKLIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK S+ I + K L D E I K A ++++ ++G D N Sbjct: 121 NNLAKEKSFSLPDIWDFEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176 Query: 187 ELQKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 EL K +Y +++ VK I D I +II+ +Q I +++ ++ Sbjct: 177 ELAKAKTYLSALSSDSKSKLVLKSIDVKKIFSDNQS-NIFKIIDLFLQKNINESLIEINY 235 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293 L P+ L G + + ++ I + N + +KI K I ++R + Sbjct: 236 CLQKGEPALRLNAGLISQIRIHAIIKLAVNSGNDNAKKICNLAGISNPKRIFFIQRKV 293 >gi|148358878|ref|YP_001250085.1| DNA polymerase III subunit delta [Legionella pneumophila str. Corby] gi|296106925|ref|YP_003618625.1| DNA polymerase III subunit delta [Legionella pneumophila 2300/99 Alcoy] gi|148280651|gb|ABQ54739.1| DNA polymerase III, delta subunit [Legionella pneumophila str. Corby] gi|295648826|gb|ADG24673.1| DNA polymerase III subunit delta [Legionella pneumophila 2300/99 Alcoy] Length = 341 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H + I G D LI E +N K + + ++ + + E E N+ SLF Sbjct: 17 HHLNILIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + I I + + + L E + + III++ + L+ + +++ Sbjct: 74 YQTVILTIFFDKKTIDTTGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ P + + I E L + S +++ G+ +A+ ++K++ Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LIT + + D + E+I++ + G AI + +K +L Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWILT--- 248 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 Q + + + + + + I + N+ Q +++ N L+++ Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298 >gi|254457784|ref|ZP_05071212.1| DNA polymerase III, delta [Campylobacterales bacterium GD 1] gi|207086576|gb|EDZ63860.1| DNA polymerase III, delta [Campylobacterales bacterium GD 1] Length = 320 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 18/285 (6%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + K +N +S+ F+F+G LI + NI F + + Sbjct: 6 LDKHIQNDSISNS-FVFFGESSFLIDTYTKKLS-NIEDASALTFYYDEYDFKSAKA---- 59 Query: 70 FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 ++ SLF + +++I+ KK LD L ++ KN N I ++ Sbjct: 60 ---HLSQASLFGGQNVLVIKSEKKVPKKELDDLIDLCEKNQDNFFIYAYYG---SDHKTY 113 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 A + +++ + N +++I + + ++ K + LL GD + NE+ Sbjct: 114 SKAFSKNNTMSVRFFSPNHHESINIIADVVKEKNVNMDKYSIAHLLNIHNGDVALAYNEI 173 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +K Y D +IT + ++ ++ + +++++ + K + L Sbjct: 174 EKFRVY---DKVITTKDIEHLVSGLGEISMDDLLKKILSKK--DFTKDLINILEHGEDEI 228 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + L +I + I + Sbjct: 229 RVATALTAYLTQLYMFNIYIRVNGAPNALEILGYPAPKFVVDEKA 273 >gi|229031973|ref|ZP_04187958.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271] gi|228729328|gb|EEL80320.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271] Length = 194 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + + I A +LL +G + E+ KL+ Y I+ + V Sbjct: 4 QDVQKWVVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEISPKLVA 63 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +++ + + + ++ I A+ + D + LL + +F+LL + + Sbjct: 64 ELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---V 120 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327 KE + + + + P + + + ++ +++ + ++ + + K ++ Sbjct: 121 KELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMD 179 Query: 328 KNIIFQTIL 336 K ++ + L Sbjct: 180 KKLVLEFFL 188 >gi|116490996|ref|YP_810540.1| DNA polymerase III, delta subunit [Oenococcus oeni PSU-1] gi|290890476|ref|ZP_06553551.1| hypothetical protein AWRIB429_0941 [Oenococcus oeni AWRIB429] gi|116091721|gb|ABJ56875.1| DNA polymerase III, delta subunit [Oenococcus oeni PSU-1] gi|290479872|gb|EFD88521.1| hypothetical protein AWRIB429_0941 [Oenococcus oeni AWRIB429] Length = 331 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 41/311 (13%), Positives = 116/311 (37%), Gaps = 22/311 (7%) Query: 38 INQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKKKIILIENL----- 91 QF + + + F ++ I ++++ S + ++I+++EN Sbjct: 29 TEQFSNLLENSIDENFRAWDFVRADVNDTGIKEVLADVSTLSFNASRRIVIVENPLFLTA 88 Query: 92 --STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSVLAISCYPDN 146 S EK + L + + + +II + K+ T++ + + + + P + Sbjct: 89 KNSLEKSEENLLLKYLNNPEGENSLIINAVNFSLDKRKKTVKSLIKTAEN---VDFKPLD 145 Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + ++ ++++ L+ SI L + N L KL Y ++ +I + Sbjct: 146 ERQILQIVKKRFLVADISIEDAVLNYYFRRLAFNLRLIINNLDKLLLY-GQNHIIDNHVI 204 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 +I ++I A Q K + + + + + L +++LL + Sbjct: 205 DFLIAPESTESAFDLIEAINQKKPGKVLKIYEELIDRGEAPIRINALLLSQYRLLIQAKS 264 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 +K ++ + +++ +I P + + + + + + + + + L Sbjct: 265 LK-LNDQNLSRLL-----HIHPYRAKLANQLASLKTFGELSNSFLNLSDIELKLKSTR-L 317 Query: 327 EKNIIFQTILY 337 + ++F+ L Sbjct: 318 DPKMLFEIFLS 328 >gi|54297255|ref|YP_123624.1| hypothetical protein lpp1300 [Legionella pneumophila str. Paris] gi|53751040|emb|CAH12451.1| hypothetical protein lpp1300 [Legionella pneumophila str. Paris] Length = 341 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H + + G D LI E +N K + + ++ + + E E N+ SLF Sbjct: 17 HHLNVLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + I I + + + L E + + III++ + L+ + +++ Sbjct: 74 YQTVILTIFFDKKTIDTMGKKILSEYLKSTNSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ P + + I E L + S +++ G+ +A+ ++K++ Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LIT + + D + E+I++ + G AI + +K +L Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 Q + + + + + + I + N+ Q +++ N L+++ Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298 >gi|332707964|ref|ZP_08427964.1| DNA polymerase III, delta subunit [Lyngbya majuscula 3L] gi|332353281|gb|EGJ32821.1| DNA polymerase III, delta subunit [Lyngbya majuscula 3L] Length = 332 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 111/301 (36%), Gaps = 16/301 (5%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +++G D + + +++ ++++ F+ ++ + I N++ + + Sbjct: 7 LYWGKDDFAMAQAVDKLRRSLVDPNWASFNYDKISPDQPDAVIQAL-NQVMTPPFGIGGR 65 Query: 85 IILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEKFT 135 ++ + + + +L LE I + ++++ + +K L++ A+ Sbjct: 66 LVWLVDTTLCQQCSDNLLAELERTIPVIPKHSVLLLTTPHRPDPRLKSTKLLQQYAQIQE 125 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 L I + L+ ++ + ++ A +L ++ D NEL+KL Y Sbjct: 126 FAL-IPPWK--TQQLVHRVKSYSVEFGIKLTNSAAVLLAESVSNDTRQLFNELEKLRLYA 182 Query: 196 -LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + ++E V ++ ++ + A QG A+ L + P ++ Sbjct: 183 LYDSQPLSESTVATLVVANTQNTLQ-LAEAIRQGDGAKALELLAALINHNEPPLKIVATL 241 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + +F+ + ++ I N P + L++ + + + TL + Sbjct: 242 ITQFRTWLWVKLLVSEGETDPNAIANTANIN-NPKRVYFLKQDVEFLSPKQLISTLGVLL 300 Query: 315 H 315 Sbjct: 301 E 301 >gi|320536056|ref|ZP_08036114.1| DNA polymerase III, delta subunit [Treponema phagedenis F0421] gi|320147106|gb|EFW38664.1| DNA polymerase III, delta subunit [Treponema phagedenis F0421] Length = 357 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 51/350 (14%), Positives = 122/350 (34%), Gaps = 48/350 (13%) Query: 11 QKSTKNLFLSHFVFIFYGSDKG-------LIFELINQFKKNISITYHDPFSLVVLNALEI 63 +K+ + ++ V++F GS+ G I E I I Sbjct: 17 KKNKEGEVMAAPVWLFLGSEIGEKNTAIEKIKERAATLG---VIDVQ--------TFYAI 65 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEII-----IKNICNHIIIIKS 118 I + + + SLFS + I+ + KK + +E + +N + +I+ Sbjct: 66 DTRIHDVVSLLQNGSLFSDVRFIIFRSAELIKK-KEEIEILTTWIKSAENTTDSFLIL-- 122 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDN------KIHLMDLIEESLLIGQKSISKEAKQI 172 + ++ K E AI + + I+ +I EA Sbjct: 123 --LSDETSIDKKIE-----AAIPPTQKKIFWELFENKKQEWIKNFFSKEGFTIENEAVAT 175 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 LL + + A + L + + I+ +++++ + +A + K+ Sbjct: 176 LLELVENNTDALKATCTHLVLFFKKGARISAADIEELLSHNKEESPFTLFDALTKKKLEL 235 Query: 233 AIMLADFFLASK-MPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMK 290 A+ + L SK ++ G F+ L H + + + + + ++K + Sbjct: 236 ALDINRKLLLSKDSSPIQIIAGLTYTFRRLYDWHVLQLQSAGNADDSSLKKAG----FIS 291 Query: 291 RNILQE---SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 + +++ + +W+K V + + ++ R + + + + LY Sbjct: 292 KKAIEQYRRAAAVWDKAAVLKIIALLNKTDFEIRTSGTVLQTALMEICLY 341 >gi|254413966|ref|ZP_05027734.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC 7420] gi|196179102|gb|EDX74098.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC 7420] Length = 309 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 95/255 (37%), Gaps = 19/255 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77 F G+D I QF + DP F++ + +++ + Sbjct: 2 KAFTLTGNDT----YRITQFIQQQKHNL-DPIWAIFNVQNFSFDQLEAA----LMYAQTL 52 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 L+ ++K+++I T + L ++ N + +I+I + + K+ ++ T+V Sbjct: 53 PLYGQEKLLVIRGKIT-ANHFELLNTLLSINTPSTVILIT--PLDTRTRIGKLIKRATTV 109 Query: 138 LAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 +C P L +++ ++ + + G + + EL+KL++ C Sbjct: 110 KQFNCTPSWKINELATNVQQESRTLGVNLPLAVATYIASATGSNSARTTQELEKLAT-CR 168 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T +K +I + + + E+ NA + L+ L+ P + L Sbjct: 169 GEETLTFGEIKQLIPNLNHSTL-ELANALKHKDVLQVNQLSQQLLSVGEPPLKITATLLT 227 Query: 257 KFQLLEKIHIIKECS 271 + K+ + Sbjct: 228 FIRTWLKLKAALKAG 242 >gi|320539655|ref|ZP_08039319.1| DNA polymerase III, delta subunit [Serratia symbiotica str. Tucson] gi|320030267|gb|EFW12282.1| DNA polymerase III, delta subunit [Serratia symbiotica str. Tucson] Length = 343 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 8/220 (3%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ G++ ++ E + + + L+A + ++ S +LF+ + Sbjct: 21 YLLSGNEPLMLQE-SQDLIRQAAQQQFSEHHSISLDAHT---DWDAIFSICQSMNLFASR 76 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 + +++ + D L ++ + ++I++ + K + + + Sbjct: 77 QTLLLMFPENGPTAPIGDQLIKLSALLHNDILLILRGPRLTKAQENSAWFKSLSPKAVCV 136 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 SC ++ L + + + + A Q+L G+ +A L++LS D Sbjct: 137 SCQAPEQMQLPRWVAARAKLMKLKLDNAANQLLCYCYEGNLLALSQVLERLSL-LHPDGK 195 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 +T V+ + D ++A + GK A + Sbjct: 196 LTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRAWHILQQL 235 >gi|291287146|ref|YP_003503962.1| DNA polymerase III delta [Denitrovibrio acetiphilus DSM 12809] gi|290884306|gb|ADD68006.1| DNA polymerase III delta [Denitrovibrio acetiphilus DSM 12809] Length = 301 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 8/232 (3%) Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 N F+N INS SLF + K ++++ K D + + K+ +I + E+K + Sbjct: 44 NPEFFFNFINSASLFQENKAAIVKSAHKIKNAADVITKC--KDCVETHLIFLTPELKISK 101 Query: 126 TLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + K ++ I L I + I + + GD Sbjct: 102 EINKALKEAGFETEI---EKKARKYDLTGKILQMFADADFRIDSSSAAEINEIFEGDLKQ 158 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 NE++KL+ Y + V + I I+A ++ D F++S Sbjct: 159 ITNEIEKLTLYFAYKKPKSAADVIKAVTARKHDSIFTFIDAYTARSRNVCNVMLDGFISS 218 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNIL 294 + L+ ++ + L +KE + ++ K + + +++ Sbjct: 219 GENLNILISLLFKRMRELYLYINLKEQVKENRPWMLDKLKAGVRAWRHEDLI 270 >gi|116670790|ref|YP_831723.1| DNA polymerase III subunit delta [Arthrobacter sp. FB24] gi|116610899|gb|ABK03623.1| DNA polymerase III, delta subunit [Arthrobacter sp. FB24] Length = 317 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 41/332 (12%), Positives = 99/332 (29%), Gaps = 27/332 (8%) Query: 22 FVFIFYGSDKGL---IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 V + G ++ L + I + + LNA + + + S S Sbjct: 5 RVVLIGGPEEYLGIRAMDRIRSQVRAAQPDV----EITRLNAGSYE--PGSLAMNV-SPS 57 Query: 79 LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LF + K+I +E+ + L + + + +++++ + L K Sbjct: 58 LFGESKLIEVESAEAMNDAFLTDALKYLADPEPDAVLVVRHGGGVRGKKLLDAI-KAAGW 116 Query: 138 LAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + C P + + I EA L+ +G + +L Sbjct: 117 PVVDCQPLKKDADKSAFVAAEFKAASRRIEPEAVHALVNAVGANLSELAAACSQLI--AD 174 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + V ++ +A + G A+ LA+ L+ Sbjct: 175 AATAVDTDMVDRYYGGRIEATAFKVADAALAGNGPLALSTLRHALATGADPVPLVAALAA 234 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313 K + + S +I ++ M+ +++++ +R W + ++ Sbjct: 235 KL----RTVAKVAGAQGSSAQIARQLG-----MQPWLVEQAQRDVRRWTPEGLVRSIQVT 285 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + IA + +N Sbjct: 286 AEADAQVKGLSRDPVYAVEHAVTVIATSVRRN 317 >gi|325956535|ref|YP_004291947.1| DNA polymerase III subunit delta [Lactobacillus acidophilus 30SC] gi|325333100|gb|ADZ07008.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus 30SC] Length = 328 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 121/315 (38%), Gaps = 30/315 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN ++ + + D + L + K D F ++ + + + Sbjct: 8 KNTNNNNPHTLIWSEDDFVNDYLAKSYAK------EDQFKDCEHVIIDCETDGLDELIAS 61 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122 + +SLFS++K+I+++N KK + ++I ++ + I+II S E + Sbjct: 62 LTESSLFSEQKLIMVKNPFFLTAKVPKKYQKQINDLIKIFENLSDLEDTIVIIASYEKLD 121 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K K +V+ I Y + + + + +I++ A Q+L+ Sbjct: 122 RRKKLTKTVLKQFNVVEPKIRSYE-----VGAITKALIKAEGYTITQSALQLLIERSDQV 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + QKL ++ ITE+ V + + I I+ + + A+ + Sbjct: 177 MDTVLSNYQKLKMTATDNK-ITEKSVMQNVDLSLAQNIFAILESALNRNYQEAVDRLENQ 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299 L LL F + +LL + I+ + S +I++ + P + + L+ ++ Sbjct: 236 LREGTSPIQLLAVFENQLELLLVVKILAQRGR-SEPQIVKDLG--VHPYRVKLALKNRVK 292 Query: 300 IWNKNLVRETLHKID 314 I + ++ Sbjct: 293 ISKLEKLLRDAIDLE 307 >gi|119025879|ref|YP_909724.1| hypothetical protein BAD_0861 [Bifidobacterium adolescentis ATCC 15703] gi|118765463|dbj|BAF39642.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 339 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 55/348 (15%), Positives = 116/348 (33%), Gaps = 33/348 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + K + + YG D L + + K Y D + L+A + T Sbjct: 11 LNGMPKPSAATTPFHLVYGGDSYLNDQTVRDLKHEAQRRYPD-AETIELDAA--NADHYT 67 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII---KSNEIK 122 F +E S SL + + I+++ NL ++K+ D + K + I+I + Sbjct: 68 F-DEAVSPSLLADRAIVIVTNLQNADEKLGDAMVSYCRQACKEPADACIVICQHEGGVKG 126 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLAN 176 K + E+ T A Y D L + + ++ + A Q L+A Sbjct: 127 KR-----LVEQLTKAGA---YKDAVADLKKPEAKLNFVMQCFERRKRRVEPMAAQQLVAV 178 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 LG + +L + +D +T V + + + + + G+ +AI+ Sbjct: 179 LGDRTGELAAMVGQLC-FDFDDNPMTLDRVNQYLTSNPQVDGFRVADLALSGRTADAIIA 237 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + AL+ K+ + + S + I K + +N Sbjct: 238 MRSSVEQGTAPIALIGALA------MKLRTMAKASAVRAGTISTAEAKTNPWVLKNA-TR 290 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L W + + + + ++ + ++I I++ Sbjct: 291 QLSGWTSSGMSACIQMLAWADEQSKTNGSDPVYALERSIELISRKGRA 338 >gi|224541315|ref|ZP_03681854.1| hypothetical protein CATMIT_00475 [Catenibacterium mitsuokai DSM 15897] gi|224525752|gb|EEF94857.1| hypothetical protein CATMIT_00475 [Catenibacterium mitsuokai DSM 15897] Length = 319 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 105/288 (36%), Gaps = 29/288 (10%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG +K L+ + + KK T D +V K I + + ++ Sbjct: 3 IVLYGEEKLLLAQRLEDLKKKYQCTSDDMNYMVYHAGETPMKEI---IEDALTQPFLTEY 59 Query: 84 KIILIENL------STEKKVLDC-----LEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130 K+++++N +KK++ + I + I +I + + K Sbjct: 60 KMVVLKNPIFLTKEKPKKKLVTDEDIKLFLDYIEHDNPTTIFVIYQDQRNFDERKKVVKS 119 Query: 131 AEKFTSVLAISCYPDNKIHLMDL---IEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K Y K+ L E+++ SI +A +LL G D + N+ Sbjct: 120 LRKHAKW-----YEMEKLTFDQLYKATREAIIHRNASIEDDALTLLLDRCGNDLLTISNQ 174 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++KL Y I ++ V+ ++ + ++ NA + + N + + ++ Sbjct: 175 VEKLCLYTHN---IKKEDVERLVPPRVEEDVFKLTNALMNHDLRNTMRVYQDLISQNHEP 231 Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNI 293 L+ + L ++ I+ + + + + I P+++N Sbjct: 232 LQLIGLIANSLRNLYQVSIMSKKGYRDTDIASALGLNPRAIYPIRKNA 279 >gi|332880242|ref|ZP_08447920.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681687|gb|EGJ54606.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 341 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/315 (11%), Positives = 98/315 (31%), Gaps = 17/315 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I ++ F+L V ++ + N + + Sbjct: 24 PVYYLMGEEAYYIDKVSEFIVDTALKEEEKDFNLTVCYGTDVTADE--VINAAKRFPMMA 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++++L+ + + L + + ++I K + K L A+ + + Sbjct: 82 ERQVVLVRE-AQSLPGKERLSFYLEHPQTSTVLIFCHKHGVLDKRKKL--AADIQKTGVL 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198 L + L ++ + A ++ ++G D EL KL + Sbjct: 139 FESKKLYDSQLPGFVTTYLRRKGVAMEQNAVMMVCESVGSDLSRLSGELDKLMLALPEGE 198 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 I V+ + + E+++A + + + +F + L Sbjct: 199 TRIGAAFVEQHVGISKDFNNFELVSALVAKDVLKVNRIVKYFNDNPKNFSLQLTLSVMFG 258 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F L + + + +++ + +++ ++ V + + K+ Sbjct: 259 FFSNLMVAYYAPQRTEEGIADWVEQPR----WQVARNILPAMQKYSGVKVMQIIGKLRET 314 Query: 317 IHLARKKKYLEKNII 331 ++ L I Sbjct: 315 DAKSK---GLGNTIA 326 >gi|301154879|emb|CBW14342.1| DNA polymerase III, delta subunit [Haemophilus parainfluenzae T3T1] Length = 345 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 115/313 (36%), Gaps = 15/313 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G+D L+ E + + + D + + ++ + S LF Sbjct: 19 KVYFLVGTDPLLLSESEDLIHQAALLQGFDEKNQITID---TNTDWPALIEASQSVGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136 K+I ++ +L L++ I + ++++ ++ K ++ + Sbjct: 76 NKQIFILNLPENLTALLQKNLQQFISGLNEDSLLVLTLPKLSKAAEKQEWFIQVNQLEPQ 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++C N L ++ +EA Q+L + + +A + LQ L Sbjct: 136 AVIVNCQTPNSEQLSRWVKHRTKNMGLLADEEAIQLLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T VK ++ + V + I+A + GK + + A + LL + Sbjct: 195 PDHKLTYNRVKSVVEQSSVFTPFQWIDALLSGKANRSKRILRGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLE-----KIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310 + L ++ +++ + + ++ I +R + +++ + + E L Sbjct: 255 ELLTLLELTKPQLRNPSLNTSLPTQTLKSDFDRLKIWQNRRPLYTAAIQRFTYQKLFEIL 314 Query: 311 HKIDHRIHLARKK 323 ++ + +++ Sbjct: 315 QELADIERITKQE 327 >gi|322385872|ref|ZP_08059515.1| DNA-directed DNA polymerase III delta subunit [Streptococcus cristatus ATCC 51100] gi|321270157|gb|EFX53074.1| DNA-directed DNA polymerase III delta subunit [Streptococcus cristatus ATCC 51100] Length = 345 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 124/341 (36%), Gaps = 39/341 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77 + I G D G L ++F K I D F + + +++ + + S Sbjct: 17 PLTILTGDDLGQFELLKDEFMKQIHYDPADLNVTLFDMKETSYADVELD-------LVSL 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +KII++++ + + L E+ + ++I + ++ L Sbjct: 70 PFFADEKIIILDHFADLTTAKKRYLSDEELKSFEQYLEAPSSTTKLVIFAEGKLDSKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 KI ++ + + + L + + + +A LL G +E Sbjct: 130 VKILKRDGQIFEAA--EIKEADLRQYFTKQAQLEGLDFAPKAFDHLLIKSG----FHFSE 183 Query: 188 LQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + K L SY E I+ + + + I T I ++ +Q +I A L Sbjct: 184 ISKNLAFLKSYK-ESGQISLEDIAEAIPKTLQDNIFDLTQLILQKQIDAARSLVRDLTLQ 242 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESL 298 L+ L +F++ ++ I+ + + S +I+ K + L+++ Sbjct: 243 GEDEIKLIAIMLGQFRMFTQVKILAD-NGRSESQIVSDLSDYLGRKMNPFQVKFALKDA- 300 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 R + N ++ TL + + + Y + + +L IA Sbjct: 301 RGLSLNFLKRTLTCLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|170757391|ref|YP_001782601.1| DNA polymerase III subunit delta [Clostridium botulinum B1 str. Okra] gi|169122603|gb|ACA46439.1| DNA polymerase III, delta subunit [Clostridium botulinum B1 str. Okra] Length = 343 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173 K + + K +K ++ I D +L +E+ K ISK + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFSDRGKKISKIPLKAF 178 Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + + + ++ NE++KL +Y + + I ++H+K++ + I ++IN + K Sbjct: 179 IQTIENENLSYIENEVEKLCTYVMHE-EIEKKHIKEMYENIKDEDIFDLINFISEKKPRK 237 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 AI + + + + +L ++F+ L + I E + E + ++ + I P + Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEDLAKELK--IHPYGCS 294 Query: 293 ILQESLRIWNKNLVRETLH 311 +L + + + +++ Sbjct: 295 VLMSQSKKFTLKQIEKSIE 313 >gi|257431009|ref|ZP_05607389.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 68-397] gi|257278439|gb|EEV09075.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp. aureus 68-397] gi|329728361|gb|EGG64798.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 21189] Length = 191 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 3/192 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + + I+ L K I ++A + + G + E++KL + + I +Q V Sbjct: 3 EEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDV 62 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 II + + + + K AI L + K LL ++L + I Sbjct: 63 NQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKI 122 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + S ++I + + P + + +R + + + + + + Sbjct: 123 LSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMD 179 Query: 327 EKNIIFQTILYI 338 ++ I+ IL + Sbjct: 180 KQLILELFILSL 191 >gi|270284194|ref|ZP_05965712.2| DNA polymerase III, delta subunit [Bifidobacterium gallicum DSM 20093] gi|270277292|gb|EFA23146.1| DNA polymerase III, delta subunit [Bifidobacterium gallicum DSM 20093] Length = 321 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 107/324 (33%), Gaps = 25/324 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I G D L + + + + S YH +V L+A + E S SL S Sbjct: 10 VIVQGGDAFLNRQQVLELVRQASE-YHPERDVVELDATTA---TPMMFEEAISPSLLSDA 65 Query: 84 KIILIENLST-EKKVLDCLEEIIIK---NICNHIIII--KSNEIKKNN--TLRKIAEKFT 135 + + N+ ++ ++ + E + + +++ ++ K LRK Sbjct: 66 ANVTVWNVQNADEPFINAILEWLKQAGHEPDPSFVVVSKEAGPKGKAVIERLRK---TGA 122 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 VL + L + + Q+ I A Q L+A G D A ++L Sbjct: 123 QVLDVPDLKKTDAKLN-YVLQRFERHQRRIEPMAAQQLVAVFGEDIGALNAMCEQLCF-- 179 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D +T V+ + + + + + G++ +A++ +A L+ Sbjct: 180 DFDEPVTLDLVERYLVANPQVTGFNVADLALAGRVQDAVIALRNAVAQGTEPILLVSALA 239 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ + + + +I K M +N + L W + + + Sbjct: 240 ------IKLRSLAKAGAVKAGQITAAETKMAPWMLKNA-TKQLHGWTSPGLARCIRLLAW 292 Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339 + + + + IA Sbjct: 293 ADEQCKTNGADPLYALERCVSSIA 316 >gi|218442643|ref|YP_002380963.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424] gi|218175001|gb|ACK73733.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424] Length = 319 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 23/329 (6%) Query: 22 FVFIFYGSDKGLIFE----LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + + G D I + +NQ + + FS + + + S Sbjct: 2 PILLLTGDDLYTIEQVIKSRVNQLPLSTRSLNYHRFSGT-CSPSQQDYFADSLM-AARSL 59 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-----NTLRKIAE 132 L S KII+I+ + + EI+ +I S + K + LR A Sbjct: 60 PLGSDSKIIVIDCDFKQLNISLEWLEILPLLPQTTTLIFCSFSLDKRLKVVKSLLRLAA- 118 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 L I +P + + LI + ++S L+ +G D +ELQKL+ Sbjct: 119 -HEEYLLIPPWPTEE--ISQLITKRASHYHLNLSPLIINYLVLAIGNDTARIDSELQKLT 175 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +T VK ++ I ++ A +G Y+ L + L ++ Sbjct: 176 L----LPNLTLVQVKGLVSSHTETGI-KLAAALRKGNAYSTARLLNQLLDKGEHPLIIVA 230 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 L +F+ + + +I + + L++ ++ N + L Sbjct: 231 SLLTQFRTWLWVKSALIKGLENDTQIASVCKIG-NLKRMYFLRQEVKSLNLRSLFFALEN 289 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQT 341 + KK +I T+L I Q+ Sbjct: 290 LMA--LEVALKKGYSTQMILPTLLKITQS 316 >gi|315038081|ref|YP_004031649.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1112] gi|312276214|gb|ADQ58854.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1112] gi|327183361|gb|AEA31808.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL 1118] Length = 328 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 121/315 (38%), Gaps = 30/315 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN ++ + + D + L + K D F ++ + + + Sbjct: 8 KNTNNNNPHTLIWSEDDFVNDYLAKSYAK------EDQFKDCEHVIIDCETDGLDELIAS 61 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122 + +SLFS++K+I+++N KK + ++I ++ + I+I+ S E + Sbjct: 62 LTESSLFSEQKLIMVKNPFFLTAKVPKKYQKQINDLIKIFENLSDLEDTIVIVASYEKLD 121 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K K +V+ I Y + + + + +I++ A Q+L+ Sbjct: 122 RRKKLTKTVLKQFNVVEPKIRSYE-----VGAITKALIKAEGYTITQSALQLLIERSDQV 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + QKL ++ ITE+ V + + I I+ + + A+ + Sbjct: 177 MDTVLSNYQKLKMTATDNK-ITEKSVMQNVDLSLAQNIFAILESALNRNYQEAVDRLENQ 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299 L LL F + +LL + I+ + S +I++ + P + + L+ ++ Sbjct: 236 LREGTSPIQLLAVFENQLELLLVVKILAQRGR-SEPQIVKDLG--VHPYRVKLALKNRVK 292 Query: 300 IWNKNLVRETLHKID 314 I + ++ Sbjct: 293 ISKLEKLLRDAIDLE 307 >gi|330996946|ref|ZP_08320811.1| DNA polymerase III, delta subunit [Paraprevotella xylaniphila YIT 11841] gi|329572020|gb|EGG53691.1| DNA polymerase III, delta subunit [Paraprevotella xylaniphila YIT 11841] Length = 341 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 36/315 (11%), Positives = 98/315 (31%), Gaps = 17/315 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I ++ F+L V ++ + N + + Sbjct: 24 PVYYLMGEEAYYIDKVSEFIVGTALKEEEKDFNLTVCYGTDVTVDE--VINAAKRFPMMA 81 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 +++++L+ + + L + + ++I K + K L A+ + Sbjct: 82 ERQVVLVRE-AQSLPGKERLSFYLEHPQPSTVLIFCHKHGVLDKRKKL--AADIQKVGVL 138 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198 L + L ++ + A ++ ++G D EL KL + Sbjct: 139 FESKKLYDSQLPGFVTTYLRRKGVTMEQNAVMMVCESVGSDLSRLSGELDKLMLALPAGE 198 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 I V+ + + E+++A + + + +F + L Sbjct: 199 TRIGAAFVEQHVGISKDFNNFELVSALVAKDVLKVNRIVKYFNDNPKNFSLQLTLSVMFG 258 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 F L + + + + I++ + +++ ++ V + + K+ Sbjct: 259 FFSNLMVAYYAPQRTEEAIADWIEQPR----WQVARNILPAMQKYSGVKVMQIIGKLRET 314 Query: 317 IHLARKKKYLEKNII 331 ++ L I Sbjct: 315 DAKSK---GLGNTIA 326 >gi|301633157|gb|ADK86711.1| DNA polymerase III, delta subunit [Mycoplasma pneumoniae FH] Length = 261 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 107/268 (39%), Gaps = 17/268 (6%) Query: 74 INSTSLFS-KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + + +LF+ K ILI N S EK L E +K + + +++ I ++ + Sbjct: 2 VLNQNLFAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVT---IYSDSPANALI 58 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 ++ +C P + +I ++ + +++ + L L + EL+KL Sbjct: 59 -NDRAITKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKL 117 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHA 249 + L ++ ++ ++CD I ++ +A ++ + A+ L + K P Sbjct: 118 TLLS-PAELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQF 176 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L FL LL + + + + + + N+ P + +Q R W+ N + Sbjct: 177 L--EFLANELLLALM-----VKGVKP-QAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTAL 228 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337 ++ I ++ L +++ +L Sbjct: 229 INAIWQLDIKIKRNDGLAIHLLKHFVLR 256 >gi|153941421|ref|YP_001392245.1| DNA polymerase III subunit delta [Clostridium botulinum F str. Langeland] gi|152937317|gb|ABS42815.1| DNA polymerase III, delta subunit [Clostridium botulinum F str. Langeland] Length = 343 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 128/315 (40%), Gaps = 18/315 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q + K ++++ +IF G + LI E I + + + + ++++ Sbjct: 6 EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62 Query: 68 STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118 T +N + S+KK +LI KK+ +E I + I I+ Sbjct: 63 DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122 Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177 K + + KI + I+ +L +E+ K I+K + + + Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182 Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + ++ NE++KL +Y + + I ++H+K++ I ++IN + K AI + Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + + + +L ++F+ L + I E + E + ++ + I P ++L Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298 Query: 297 SLRIWNKNLVRETLH 311 + + + +++ Sbjct: 299 QSKKFTLKQIEKSIE 313 >gi|312140320|ref|YP_004007656.1| DNA polymerase III delta subunit [Rhodococcus equi 103S] gi|325677104|ref|ZP_08156773.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi ATCC 33707] gi|311889659|emb|CBH48976.1| DNA polymerase III delta subunit [Rhodococcus equi 103S] gi|325552089|gb|EGD21782.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi ATCC 33707] Length = 325 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 98/302 (32%), Gaps = 20/302 (6%) Query: 25 IFYGSDKGLIFELINQ----FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + G ++ L+ E + + + + L A + E+ S SLF Sbjct: 12 LVLGDEEFLV-ERAVASVIAAVREAAGSAGQDMPVSRLRAGDASAPE---LAELLSPSLF 67 Query: 81 SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 ++ +++++E + K + +++ ++++ + + + + +K + Sbjct: 68 AEDRVVVLEAAAEAGKDAVALVQDAAADLPEGVVLVVLHSGGGRAKAMAGVLQKS-GAVV 126 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 C +D + +S E ++++ +G D +L + Sbjct: 127 HQCAKLKANERVDFVRGEFRTAGVRVSPEVIELVVEAVGSDLRELAAACSQLVADTGGK- 185 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I V+ + ++ + + G A+ + + +P L Sbjct: 186 -IDASAVQRYYSGKAEVSGFDVADKAVAGDRRGAMESLRWAMHRGVPHVLLADALA---D 241 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316 + I + ++ + P K Q +R W+ + E L +++ Sbjct: 242 AVHTIARVGSAGRGDPFRMASELGMP--PWKIKKAQAQVRGWDPASIGEALQVVARLNAE 299 Query: 317 IH 318 + Sbjct: 300 VK 301 >gi|260222021|emb|CBA31169.1| hypothetical protein Csp_C27200 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 365 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 103/304 (33%), Gaps = 22/304 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ +G + L E ++ + + + + + + S S SLF+ Sbjct: 19 LYTVHGDEPLLQQEALDAIRAHARTLGYTERTSHTVAGAHF--DWSEVLAAGGSLSLFAD 76 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137 K+I+ I + K L+++ + N + I+ + K + Sbjct: 77 KQIVEIRIPSGKPGKDGSVALQQLAEGSQGNDSTLTIVLLPRLDKMTKSGAWFSALESYG 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLS 192 + I P + L I + L + ++ + Q + G+ +A+ E+QKL Sbjct: 137 ITIQVDPVERNALPQWIAQRLGAQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQKLG 196 Query: 193 SY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 + +++ + V+ + + + ++ A + G+ + D A Sbjct: 197 LLFPADAHD-GVLSLEQVESAVLNVARYDVFKLSEAVLAGQAGRVQRMLDGLQAEGEAEV 255 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVR 307 + + + + L+++ +N I + + + L ++ + Sbjct: 256 LVHYTLAEDIRALKRVKDAMGQGRPLPM----ALRENRIWGAKERLFERVLPKLSERTLA 311 Query: 308 ETLH 311 E L Sbjct: 312 ELLQ 315 >gi|157962962|ref|YP_001502996.1| DNA polymerase III subunit delta [Shewanella pealeana ATCC 700345] gi|157847962|gb|ABV88461.1| DNA polymerase III, delta subunit [Shewanella pealeana ATCC 700345] Length = 343 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 103/304 (33%), Gaps = 12/304 (3%) Query: 25 IFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G D L + + + + L + + + + SLFS + Sbjct: 20 LIFGDDPWLCEQSRAALHSEAKRQGFEEKIQLSQETGFSWNE----LFEQWQAMSLFSSR 75 Query: 84 KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140 +II + L+ ++ + + ++I+ ++ T K + + + Sbjct: 76 RIIELTLPQAKPGTDGSAMLQTLMQMDNPDVLLILTGPKLAAEQTKSKWFKSLDAKGIYV 135 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C ++ + S++++ +++L A G+ +A+ LQ L Sbjct: 136 PCATPEGAQFQRWLDGRINYYGLSLARDPREMLFALYEGNLLAADQALQLLQLLS-PTAP 194 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I + + D + ++ +A + + A + + + +L ++ + Sbjct: 195 IDCEQLSQYFEDQSRFSVFQLTDAMLNNQQDKAQHILSQLKSEGVAMPIILWSLFKELAV 254 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L ++ ++ S + + K I ++ I Q +L + L Sbjct: 255 LLQLKTAQD-KRESLQGLWCKLR--IWDKRKPIYQNALNRLELTHIETLLAGASAIELKL 311 Query: 321 RKKK 324 +++ Sbjct: 312 KQQG 315 >gi|300865075|ref|ZP_07109901.1| putative DNA polymerase III, delta subunit [Oscillatoria sp. PCC 6506] gi|300336939|emb|CBN55051.1| putative DNA polymerase III, delta subunit [Oscillatoria sp. PCC 6506] Length = 324 Score = 64.2 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 124/330 (37%), Gaps = 34/330 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 + G D I + ++ FKKN+ DP F+ +A + + + + +L Sbjct: 4 LLIGDDLHAIHKKLSAFKKNL-----DPAWIGFNYHRFDASALNEA----VDCALTPALG 54 Query: 81 SKK-KIILIENLSTEKKVLDCLE--EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 ++K K++++E + ++ + LE ++ + ++ + I K + K + Sbjct: 55 TEKAKLVVVEGCNFKQFTEEALEVLNLLPQVPEKTHLVFVAPSIDKRLKVAKSLLSQAKL 114 Query: 138 L---AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I + + + I L S++ L +G + + +EL KL++Y Sbjct: 115 FEFDLIPPWRTDL--IAHSIRNQALAIGLSLNSNLIDYLAVAIGSNPARAESELHKLATY 172 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 +T + V+ +I T ++ + A + A+ L LA A+ Sbjct: 173 SNG-AHLTLKQVQALIPSTTQNSLQ-LAEAMKENSSKKAVYLLQELLAIGTFPLAICATL 230 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQESLRIWNKNLVRETL 310 + +F+ + +I + + K + +++ + S+ + L Sbjct: 231 ITQFRTWLWVKAAIVGGVKQDAEIARICQISNPKRVYFLRKEVAGASVT--SLAAAMSLL 288 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 ++ + L RK ++ I L IAQ Sbjct: 289 LDLEASLKLGRKGDFMLPVI-----LAIAQ 313 >gi|189347624|ref|YP_001944153.1| DNA polymerase III, delta subunit [Chlorobium limicola DSM 245] gi|189341771|gb|ACD91174.1| DNA polymerase III, delta subunit [Chlorobium limicola DSM 245] Length = 348 Score = 63.8 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 28/222 (12%) Query: 28 GSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86 G + L ELI K + + D F+ V ++ N+ ++ + +F++KK+I Sbjct: 21 GPEGYLKEELIGLIKGALFPSEADAAFNTTVFYGSDL--NLGELASKASEYPMFTEKKLI 78 Query: 87 LIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132 ++ + +K D I ++++ + E+ K + +++ Sbjct: 79 VVRQFEKIKRTGSREQQKHYDDKFAAYIAHPADFTVLVLDTDTADKKELDK-SPFKELKH 137 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 AI + E +A ++L A + +E+ K+ Sbjct: 138 LKIDFPAI-------RNPDLFATEQAKAAGWEFEPDALKLLTAYIQPSAREIAHEIDKII 190 Query: 193 SYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 Y + IT + D + + + E+ A +G + Sbjct: 191 LYASSKHQGNSITAADIYDCVGISKTYNVFELEKALAEGNLR 232 >gi|300871294|ref|YP_003786167.1| DNA polymerase III subunit delta [Brachyspira pilosicoli 95/1000] gi|300688995|gb|ADK31666.1| DNA polymerase III delta subunit [Brachyspira pilosicoli 95/1000] Length = 339 Score = 63.8 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 34/262 (12%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN------- 72 + +++ G ++ FKK + H SL+ + + + N S F++ Sbjct: 26 KYSIYVLTGKER--------LFKKAFITSMH---SLIFKDEGDSEMNYSLFYDKNDAVGY 74 Query: 73 ---EINSTSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 E+ T F ++++I + + E I + III+++ + + + Sbjct: 75 SPLEVADTPPFGSNIRLVVIYKYN---NFQEDFLEYCINPSKSSIIILETENSLEEDGIY 131 Query: 129 KIAEKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 K K +V I + D ++ LI + K IS +A ++ N+ D + Sbjct: 132 KYFSKKDNVDYIH-FIDFPIPDERDFRSLITAYINKNNKKISNDAVDYIVNNINLDYDSL 190 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +EL K+ SY + + + + D + I + +++ + + Sbjct: 191 YSELDKICSY-NDKEYLNVEDIMDFTYVSKNRNIFDFLDSVFERDRKKCFSIMHRLDQDA 249 Query: 245 MPSHALLHGFLQKFQLLEKIHI 266 S L+ + F L + I Sbjct: 250 SSSLTLM---MNNFLALYYMKI 268 >gi|194334764|ref|YP_002016624.1| DNA polymerase III subunit delta [Prosthecochloris aestuarii DSM 271] gi|194312582|gb|ACF46977.1| DNA polymerase III, delta subunit [Prosthecochloris aestuarii DSM 271] Length = 349 Score = 63.8 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/323 (11%), Positives = 102/323 (31%), Gaps = 45/323 (13%) Query: 22 FVFIFYGSDKGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++ YG + L EL K + S + V ++ + + + +F Sbjct: 15 PLYFLYGPESYLKEELTELIKTRAFSSEEEATLNTSVFYGQDVT--LGDLVSRASEFPMF 72 Query: 81 SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------- 124 +++K+I++++ ++ +K+ ++ I+++ +++I K Sbjct: 73 TERKLIVVKHFEKYRKAGSVAQQKQHVEQFRRYCKNPADTTILVLDADQIDKKDLQKAPF 132 Query: 125 ---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 LR + + E +A + A + Sbjct: 133 SELAPLRHDFAQIKHADVFA-------------TERAATYGWEFEPDAIKAFSAYIEPSS 179 Query: 182 IASRNELQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 E++KL Y + IT V + + + + E+ A + ++ Sbjct: 180 REICREVEKLVMYASSKRKTSRITSDDVYECVGISKQYNVFELEKALASKNLRLCSGISL 239 Query: 239 FFLASKMP---SHALLHGFLQKFQLLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNI 293 + + +L + + K+ I++ KI+ + +N Sbjct: 240 MIMEQEGQKEGIMNILRYLSVFYSRIWKMQAPGIRQQPLSETAKILGMFGRQEFFA-KNY 298 Query: 294 LQESLRIWNKNLVRETLHKIDHR 316 L + R + + + + + H Sbjct: 299 LDYATRF-SLQEIEKAILALQHT 320 >gi|260591478|ref|ZP_05856936.1| DNA polymerase III, delta subunit [Prevotella veroralis F0319] gi|260536509|gb|EEX19126.1| DNA polymerase III, delta subunit [Prevotella veroralis F0319] Length = 341 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 97/264 (36%), Gaps = 9/264 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G + I + + ++ F+ + ++ + + + Sbjct: 23 PFYLLMGDESYYIDSISDYIASHVLSPEECDFNQTICFGSDVTA--VQVADMARRYPMMA 80 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 + ++I+++ + + + LE+ + + + I++ K + + + + + Sbjct: 81 EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDARKKVLGLAQSVGVVFE 139 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDIL 200 L D I+ L + SI ++ Q++ +G D +EL K+ Y +D Sbjct: 140 SKKLRDYQLPDFIQNYLKPKKISIDPKSCQMIADYIGADLSRIVSELDKILIYLPEDDRR 199 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQKF 258 IT + V+ + + E+ NA + ++ A + +F + L F Sbjct: 200 ITPEVVEKEVGVSKDFNAFELRNAIVSKDVFKANQIIKYFDNNPKAGSLYSFLPLLFSFF 259 Query: 259 QLLEKIHIIKECSNISFEKIIQKT 282 Q L +H N S E+ I + Sbjct: 260 QNLMIVHY---TPNKSSEQDIARA 280 >gi|303232309|ref|ZP_07319005.1| DNA polymerase III, delta subunit [Atopobium vaginae PB189-T1-4] gi|302481595|gb|EFL44659.1| DNA polymerase III, delta subunit [Atopobium vaginae PB189-T1-4] Length = 315 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 24/278 (8%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++++ +L V++ GSD I + + + + F+ +A ++ +IS Sbjct: 1 MEQARAHLANLMNVYLAVGSDDVKI-KRAAARLRTYLLDAYVFFNYNEYDAQQL-SDISE 58 Query: 70 FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + + + +I+++ N+ + + +L L + + ++ + + ++ KN L Sbjct: 59 VLSCCMAMPMGDDVRIVVLFNVDALARDMLSQLVSYVQNPNTHCVLFLSATKLAKNTALY 118 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K I C K + +E A L+ +G ++ Sbjct: 119 KAVAHVGQKAIIPCAAAQKEEVPVFVERVARSKNLQFDANAIAELIGRVGAQPRMLTCQI 178 Query: 189 QKLS--SYCLEDI------------------LITEQHVKDIICDTHVLYIEEIINATIQG 228 ++ Y + +T + V ++ T + + ++A Sbjct: 179 DMIAAHMYAQQASRSTVSTTAAAGAGAPALLRVTREDVCALVDSTAEVTPWKFLDALSAR 238 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 A++ L S L +Q+ + L Sbjct: 239 NEAQALVAYAQ-LKSTSSPIQLTRLMVQRIRALMCARA 275 >gi|307610050|emb|CBW99585.1| hypothetical protein LPW_13551 [Legionella pneumophila 130b] Length = 341 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 111/290 (38%), Gaps = 10/290 (3%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H + + G D LI E +N+ K + + ++ + + E E N+ SLF Sbjct: 17 HHLNVLIGQDHYLIDEALNKIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73 Query: 81 SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + I I + + + L E + + III++ + L+ + +++ Sbjct: 74 YQTVILTIFFDKKTIDTMGKKILGEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ P + + I E L + S +++ G+ +A+ ++K++ Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKINLSNTPS 191 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LIT + + D + E+I++ + G AI + +K +L Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 Q + + + + + + I + N+ Q +++ N L+++ Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298 >gi|313205637|ref|YP_004044814.1| DNA polymerase iii, delta subunit [Riemerella anatipestifer DSM 15868] gi|312444953|gb|ADQ81308.1| DNA polymerase III, delta subunit [Riemerella anatipestifer DSM 15868] gi|315022632|gb|EFT35657.1| DNA polymerase III, delta subunit [Riemerella anatipestifer RA-YM] gi|325334935|gb|ADZ11209.1| DNA polymerase III, delta subunit [Riemerella anatipestifer RA-GD] Length = 345 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 18/308 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ F+G + I I F+ + F+ V+ + S + Sbjct: 18 PIYFFHGEEPYYIDVAIKHFENEVLTEDEKAFNQTVVYGKDTTY--SEVLALARQFPMMG 75 Query: 82 KKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FTS 136 +++I+++ + K + LE + + + I++I K ++ RK K + Sbjct: 76 DRQLIVLKEAQDIRLTEKETEALEAYVNNPVPSTILVIAHKHKKVDS--RKKFAKTLAKN 133 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + P +L I++ + IL LG D NE+ KL Sbjct: 134 KMLFLSEPVKDWNLPQFIQDEISRAGLKAEPNIPTILAEYLGNDLSRIANEINKLKLILK 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHA-LLHGF 254 E ++ V+ I + + E+ A A+ +A + + K +L Sbjct: 194 EGEVLNSLLVEKHIGISKDYNVFELQKALGTKNEEQAMKIAYYIGKNPKSNPFVMMLGSL 253 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKI 313 F L H + +S + I + + S R++ + + Sbjct: 254 YNYFSNLIVFHSL---KGMSPQSIAAEMGVNPYFIKD---YETSARLYPLKHATRIISIL 307 Query: 314 DHRIHLAR 321 ++ Sbjct: 308 REFDMKSK 315 >gi|307566337|ref|ZP_07628776.1| DNA polymerase III, delta subunit [Prevotella amnii CRIS 21A-A] gi|307344914|gb|EFN90312.1| DNA polymerase III, delta subunit [Prevotella amnii CRIS 21A-A] Length = 342 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 107/275 (38%), Gaps = 14/275 (5%) Query: 1 MATIESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58 M T H F Q +L F ++ G + I ++ + N+ F+ + Sbjct: 1 MPTKLDHTF-QSIISDLKAKRFAPFYLLMGEESYFIDKITDFIANNVLEKDMRDFNQTIC 59 Query: 59 NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116 ++ + + + + ++++++ + + D LE+ + NI I++ Sbjct: 60 FGSDVSS--TQVIDIAKRYPVMADTQVVIVKEAQNIRSL-DALEKYLSGNILKSTILVWC 116 Query: 117 -KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 K+ I + K+A + + L I+E L +I +AKQI+ Sbjct: 117 YKNGVIDNRKKIVKLA--NSVGVVFESVKLRDYQLPTFIQEYLNKKNVAIDPKAKQIIAD 174 Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 +G D +EL K + S +++LIT + V+ I + E+ NA IQ I+ A Sbjct: 175 AVGSDLNRLTSELDKVIISLNKDNLLITPEIVEREIGISKDFNSFELRNAIIQKNIFKAN 234 Query: 235 MLADFFLASKMPSHA--LLHGFLQKFQLLEKIHII 267 + +F + +L F+ L H + Sbjct: 235 QIIKYFSNNPKAGSLYSVLPILFSYFRNLMITHYL 269 >gi|154486270|ref|ZP_02027677.1| hypothetical protein BIFADO_00074 [Bifidobacterium adolescentis L2-32] gi|154084133|gb|EDN83178.1| hypothetical protein BIFADO_00074 [Bifidobacterium adolescentis L2-32] Length = 339 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 114/348 (32%), Gaps = 33/348 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 + K + + YG D L + + K Y D + L+A Sbjct: 11 LNGMPKPSAATTPFHLVYGGDSYLNDQTVRDLKHEAQRRYPD-AETIELDAANADHYA-- 67 Query: 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII---KSNEIK 122 ++E S SL + + I+++ NL ++K+ D + K + I+I + Sbjct: 68 -FDEAVSPSLLADRAIVIVTNLQNADEKLGDAMVSYCRQACKEPADACIVICQHEGGVKG 126 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLAN 176 K + E+ T A Y D L + + ++ + A Q L+A Sbjct: 127 KR-----LVEQLTKAGA---YKDAVADLKKPEAKLNFVMQCFERRKRRVEPMAAQQLVAV 178 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 LG + +L + +D +T V + + + + + G+ +AI+ Sbjct: 179 LGDRTGELAAMVGQLC-FDFDDNPMTLDRVNQYLTSNPQVDGFRVADLALSGRTADAIIA 237 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + AL+ K+ + + S + I K + +N Sbjct: 238 MRSSVEQGTAPIALIGALA------MKLRTMAKASAVRAGTISTAEAKTNPWVLKNA-TR 290 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 L W + + + + ++ + ++I I++ Sbjct: 291 QLSGWTSSGMSACIQMLAWADEQSKTNGSDPVYALERSIELISRKGRA 338 >gi|145219140|ref|YP_001129849.1| DNA polymerase III, delta subunit [Prosthecochloris vibrioformis DSM 265] gi|145205304|gb|ABP36347.1| DNA polymerase III, delta subunit [Chlorobium phaeovibrioides DSM 265] Length = 346 Score = 63.8 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 26/227 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80 V+ F+G + L E + + + + V+ +I + +F Sbjct: 15 PVYFFHGPESYLKEEFTALIRTAAFPSEEEAACNTHVIYGPDIT--PGDLVARASEYPMF 72 Query: 81 SKKKIILIEN-----LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 S K++I++ K + L + I+++ +++++K K A Sbjct: 73 SPKQLIIVRQFEKIKKPPSKDLQKQHDLKLAGYMNSPAEFTILVLDADQLEK-----KDA 127 Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 EK D L + +A + A + E Sbjct: 128 EKKPFSTLKPFRHDFPLIKTPDLFA--TQRAREAGWEFEPDALKAFTAYIQPSSREICQE 185 Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 ++K+ +Y + IT V + + + + E+ A + Sbjct: 186 IEKMITYASSRSGEKNITAADVYECVGISKTYNVFELEKAVAARNLR 232 >gi|238758031|ref|ZP_04619212.1| DNA polymerase III subunit delta [Yersinia aldovae ATCC 35236] gi|238703785|gb|EEP96321.1| DNA polymerase III subunit delta [Yersinia aldovae ATCC 35236] Length = 315 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 8/205 (3%) Query: 48 TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEII 105 + + FS L+A NI + + SLF+ ++ +L+ + + L ++ Sbjct: 18 DFSEHFSFT-LDAHTEWDNIFSL---CQALSLFASRQTLLLNFPESGLTAPMNEQLVKLS 73 Query: 106 IKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 + ++I+++N++ K + + + +SC + L + + Sbjct: 74 SLLHPDILLILRANKLTKAQENSAWFKALSKNGVLVSCQTPEQTQLPRWVSARTKLLNLE 133 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + A Q+L G+ +A L++LS D +T V+ + D ++A Sbjct: 134 VDDAATQLLCYCYEGNLLALSQALERLSL-LYPDGKLTLPRVEQAVNDAAHFTPYHWLDA 192 Query: 225 TIQGKIYNAIMLADFFLASKMPSHA 249 + GK A + + Sbjct: 193 LLAGKSKRAWHILQQLQLEESEPVI 217 >gi|226360420|ref|YP_002778198.1| hypothetical protein ROP_10060 [Rhodococcus opacus B4] gi|226238905|dbj|BAH49253.1| putative DNA polymerase III delta subunit [Rhodococcus opacus B4] Length = 325 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 91/295 (30%), Gaps = 14/295 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSLFSK 82 + G ++ L+ + Q + + + + L ++ + E+ S SLF++ Sbjct: 12 LVLGDEEFLVERAVAQVVGQVRASAN-VAAGAELPVNRLRAGDAGAAELAELLSPSLFAE 70 Query: 83 KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +++++E + K + + + ++++ + + + EK + Sbjct: 71 DRVVVLEAAAEAGKDAVALVLDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKL-GAVVHP 129 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 C L+ I +S + Q + +G + +L++ I Sbjct: 130 CAKLKSGELIGFIRGEFRTLGVRVSPDVVQSVFEGVGSNLRELAAACSQLTADTGGK--I 187 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + ++ + + G AI + + +P L + Sbjct: 188 DVAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALA---DAV 244 Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 I + ++ + K L + W V E L + Sbjct: 245 HSIARVAPAGRGDPFRMASELGMPPWKIKKAQALAKG---WTPTSVGEALRIVAA 296 >gi|218848126|ref|YP_002454709.1| DNA polymerase III, delta subunit [Bacillus cereus G9842] gi|218546257|gb|ACK98650.1| DNA polymerase III, delta subunit [Bacillus cereus G9842] Length = 323 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 115/306 (37%), Gaps = 23/306 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F+ YG ++ I + + + + + FS+ + + E ++ + SL Sbjct: 3 LFVIYGLEQYTIDKELTKIINKDLESDNIDFSVNIYDCDETTVQVAI--EDAEMFSLMMG 60 Query: 83 KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA- 131 K ++++N + +K D L++ I + +I+ ++ + + K+ Sbjct: 61 PKKVVVKNALFLTGQKMKKDEHDMDILQKYIESPNEDTDLILVVPYEKLDQRKKIVKLLK 120 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 EK + A I I+E +S EA + L +G + +ELQK+ Sbjct: 121 EKAIIIEAAVL---KSIEAKRWIKEESQNLNIELSSEAIEHLYMMVGSNLQMLSSELQKI 177 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + Y E + + + ++ T + II + A + K+ + A+ Sbjct: 178 AMYVGEKRKVGTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIAIA 237 Query: 252 HGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 ++F + K H+ ++ + P ++ R +++ +++ Sbjct: 238 AMISKQFSRMLEVKAHLHDGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQQI 292 Query: 310 LHKIDH 315 LH++ Sbjct: 293 LHRMSQ 298 >gi|228969939|ref|ZP_04130659.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228789761|gb|EEM37623.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 176 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 70/174 (40%), Gaps = 4/174 (2%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 I A +LL +G + E+ KL+ Y IT + V +++ + + + Sbjct: 1 MHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITTKLVAELVPKSVEQNVFALT 60 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 ++ I A+ + D + LL + +F+LL + +KE + + + Sbjct: 61 EKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLYQ---VKELQQRGYGQNQIAS 117 Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + P + + + ++ +++ + ++ + + K ++K ++ + L Sbjct: 118 HIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMDKKLVLEFFL 170 >gi|145595979|ref|YP_001160276.1| DNA polymerase III, delta subunit [Salinispora tropica CNB-440] gi|145305316|gb|ABP55898.1| DNA polymerase III, delta subunit [Salinispora tropica CNB-440] Length = 326 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 73/242 (30%), Gaps = 12/242 (4%) Query: 73 EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 E+ S SLF ++++++ + K + L + +++ K Sbjct: 58 EMLSPSLFGGRRLLILRSGQDARKDLAAALLGYAKSPDPDVQLVVLHLGAAKGKAFADGL 117 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + + + + + + + A + L+A +G D EL Sbjct: 118 KAAGATVVPAARLKGHRDRVAFVRDEFRRAGGRCTDSAAEALIAAVGNDLR----ELAAA 173 Query: 192 S--SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 D I+ + V + + +AT+ G + A+ + L + Sbjct: 174 CSQLMADTDGKISPETVARYYRGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVP 233 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + + S ++ ++R Q R W + + Sbjct: 234 IADALA---DGVRTVARVASAGRGSPYQLASTLGMPAWKIERA--QRQSRGWTPEGLVQA 288 Query: 310 LH 311 + Sbjct: 289 MR 290 >gi|297559663|ref|YP_003678637.1| DNA polymerase III subunit delta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844111|gb|ADH66131.1| DNA polymerase III, delta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 320 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 92/271 (33%), Gaps = 11/271 (4%) Query: 73 EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKI 130 E+ S SLF ++++++ + K + + + + + +++ + K L+ Sbjct: 53 EVTSPSLFGDRRVVVLRSSQDLTKDLAATVTDYLGDPADDVNLVLTHAGGNKGKALLQAA 112 Query: 131 AEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + C P + ++ + I+ +A Q L+ +G + Sbjct: 113 VKAGAH--RVDCKGPSKPAERVAFVKGEFSQAGRQITADAAQALVDAVGSELREIAAACT 170 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +L + + V + + ++G++ A+ + LA Sbjct: 171 QLI--ADTEGRVDAAAVARYHSGRAEASGFTVADRAVEGRLPEALEQLRWSLAVGTAPVL 228 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + + +S + ++ + P K L++ R W+ V Sbjct: 229 INSALAGAVRGIAV--AAQPPRGMSEADLAKRAKVP--PWKLRTLRQQARGWSPAGVTRA 284 Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + + L + + + + ++ IA+ Sbjct: 285 MAVVAETDALIKGAGRDPEYALERAVIEIAR 315 >gi|212550608|ref|YP_002308925.1| DNA polymerase III delta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548846|dbj|BAG83514.1| putative DNA polymerase III delta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 338 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 97/264 (36%), Gaps = 10/264 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++F G + L N +++ + ++ E N+ + N + + Sbjct: 21 PIYLFQGEESYYTDLLTNLLIQSVLDEVEKDLNQTIVYGSET--NVPSIINICRKYPMMA 78 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSVLA 139 K+++I+I+ K + D L + + + + I++I +++ L + E + Sbjct: 79 KRQLIVIKEAQALKNIND-LIHYVKQPLSSTILVINYKYGKLEGRKKL--VDEIAKVGII 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-ED 198 + D I + L Q I+ + +I+ +LG D EL KLS + Sbjct: 136 FESKKIINSKIPDFIIDYLKGKQIEINFQIAKIITDHLGNDLSKIVKELDKLSIVIPIDQ 195 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 IT ++ I + E+ NA I +A +F + P L+ Sbjct: 196 KRITADLIEKNIGISKDFNNFELQNAVAVRDILKVNRIAFYFEQNPRNNPLILTLNVLFG 255 Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280 F L K+ S +++ Sbjct: 256 FFVNLMICQYEKDQSQKHLMQVLG 279 >gi|296127026|ref|YP_003634278.1| DNA polymerase III, delta subunit [Brachyspira murdochii DSM 12563] gi|296018842|gb|ADG72079.1| DNA polymerase III, delta subunit [Brachyspira murdochii DSM 12563] Length = 341 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 82/239 (34%), Gaps = 15/239 (6%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL---EIQKNISTFWNEINS 76 + +++ G ++ ++ D +N + + E+ Sbjct: 28 KYCIYVLTGKERLFKKAFAAALHSSMFPDEGD----SEMNYSVFYDKNDAVGFAPLEVAD 83 Query: 77 TSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-- 133 T F K ++I+I + + E + ++++++ + + + K K Sbjct: 84 TPPFGSKLRLIIIYKYN---NFQEDFLEYCLNPSKTAVVVLETESSLEEDPIYKYFSKKQ 140 Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++ I ++ LI + K IS +A + L+ N+ D + +EL K+ Sbjct: 141 GSHNINFIDFPLPDEKDFRGLINAYINKQGKKISSDAVEYLINNINLDYDSLYSELAKIC 200 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 SY + + + + D + I + ++A + + S L+ Sbjct: 201 SY-NDKEYLNVEDIMDFTYVSKNRNIFDFLDAVFERNRRKTFSIMHRLDQEASSSLTLM 258 >gi|158521201|ref|YP_001529071.1| DNA polymerase III delta [Desulfococcus oleovorans Hxd3] gi|158510027|gb|ABW66994.1| DNA polymerase III delta [Desulfococcus oleovorans Hxd3] Length = 481 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 24/254 (9%) Query: 31 KGLIFELINQFKKNISITYHDPFSLVV-LNALEIQKN--ISTFWNEINSTSLFSKKKIIL 87 G + + D +L L+ + K T + L Sbjct: 117 AGFVKLIGLLDIALTGDKDLDKKALARALDDDTVVKAEWPDTLIDACAGRDL-------- 168 Query: 88 IENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFT-----SVLAIS 141 + ST + L I K N+ ++I ++ + K L K ++ SV + Sbjct: 169 --SASTGIDAAEALVAAIEKGFAPNNHLVITTDMVDKRRKLYKAIKEHGVVVDCSVAKGA 226 Query: 142 CYPD---NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 D L +++ ++L K++ A +L G D L+KL +Y + Sbjct: 227 SAADKKAQAATLQEVMRDTLKNQNKTMDGAAFTLLCETTGFDLRTFAGGLEKLCTYVGDR 286 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP--SHALLHGFLQ 256 IT + VK ++ T V + E+ NA + A+ + L P +L Sbjct: 287 KAITAKDVKAVMVRTRVDPVFELTNAVGEKNTDQALFYLNSLLNGPEPLYPLQILAAIAN 346 Query: 257 KFQLLEKIHIIKEC 270 + + L I E Sbjct: 347 QTRKLAVIRDFMES 360 >gi|301630144|ref|XP_002944187.1| PREDICTED: DNA polymerase III subunit delta-like [Xenopus (Silurana) tropicalis] Length = 505 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 95/301 (31%), Gaps = 16/301 (5%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 H ++ +G + L E ++ + + S + + S +S SLF Sbjct: 173 HPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAASSSLSLF 230 Query: 81 SKKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135 + K+I+ + S + + + + ++ + K Sbjct: 231 ADKQIVELRLPSGKPNKDGAAALQQLAQAAQGNDSTLTLVILPRLDKATKTSPWFSALDA 290 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQK 190 L++ P + L I + L + ++ + Q + G+ +A+ E+QK Sbjct: 291 QGLSVQIDPVERGMLPAWIAQRLATQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQK 350 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ ++ Q V+ + + + ++ A + G+ + D A + Sbjct: 351 LAL-LYPQGALSWQQVEAAVLNVARYDVFKLSEAALAGQSARVQRMLDGLQAEGTNEVLV 409 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + L+++ + + + K ++ + L L Sbjct: 410 HWVLAEDIRALKRVKDAMNTGKPLPMALRENR---VWGAKEHLFERVLPRLPDAAAARLL 466 Query: 311 H 311 Sbjct: 467 Q 467 >gi|319937619|ref|ZP_08012023.1| hypothetical protein HMPREF9488_02859 [Coprobacillus sp. 29_1] gi|319807261|gb|EFW03873.1| hypothetical protein HMPREF9488_02859 [Coprobacillus sp. 29_1] Length = 320 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG +K L+ + + KK I D + V+ + +IS + + ++ K Sbjct: 4 VIYGEEKMLMEQKLAALKKQYRIHEED---MNVITYWCHETSISEMIEDALTPPFLTEYK 60 Query: 85 IILIEN---LSTEKKV------LDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133 +I+++N L+T+K+ + L + + K I +I + + K K Sbjct: 61 MIIMKNPLFLTTQKQKDVNEEDIQMLMDYLSKENPTTIFVIYHDQKNFDERKKIVKKLRK 120 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + + L +++ I +A ++LL+ + D + E+ KL Sbjct: 121 DLRFIEVG--KLDHHQLFKTTHQAIKKRGCEIDDDALELLLSRMPNDLLEISQEVNKLCL 178 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Y IT + + ++ + E+ A + + +I + + + L+ Sbjct: 179 YS---QHITRETIDIMVAKQVEENVFELTKAILNKETGKSIQIYKDLMMNNEEPIKLIVL 235 Query: 254 FLQKFQLLEKIHII 267 +LL ++ ++ Sbjct: 236 IANSLRLLYQVKLL 249 >gi|312144021|ref|YP_003995467.1| DNA polymerase III, delta subunit [Halanaerobium sp. 'sapolanicus'] gi|311904672|gb|ADQ15113.1| DNA polymerase III, delta subunit [Halanaerobium sp. 'sapolanicus'] Length = 335 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 111/322 (34%), Gaps = 26/322 (8%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 ++ +N ++ Y +D L E ++F F+L ++ E Sbjct: 3 VKDFIENENKLKNLYYIYSADNYLRDEFKDKFIDKFVEENIRDFNLSIVQPGE--DYFKK 60 Query: 70 FWNEINSTSLFSKKKIILIE---NLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN 125 N + + L SKK+ ++ + S +KK L II + ++ + SN + K Sbjct: 61 LSNAVQTPPLGSKKRFVISQLEAEDSFDKKAQQKLISIIENLDKTTCLLFLSSNSLDKRK 120 Query: 126 TLRKIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 L +K S Y +L I K I K + ++L Sbjct: 121 KLYLTIKKKGSYFEFKAPKY----GNLDKWIVRRFREHNKKIDKRSIKVLENMFSNKLEI 176 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDT---HVLYIEEIINATIQGKIYNAIMLADFF 240 E++K+ + + I+ +KD+I I ++ + K A++ Sbjct: 177 LATEIEKIITRFPDKEKISYYDIKDLISRERFIEDEEIFAFLDLIGEKKTDKALISLKEM 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 L + LL + +LL ++ +N K I K + + LQ Sbjct: 237 LNKGVYPLYLLTMLANQIELLMQVKYYSQFTKNNKEIAKKINKHPYPV----KKALQR-- 290 Query: 299 RIWNKNLVRETLHKIDHRIHLA 320 ++N + L +I I A Sbjct: 291 ---SRNFTQLELERILEEILTA 309 >gi|152967366|ref|YP_001363150.1| DNA polymerase III, delta subunit [Kineococcus radiotolerans SRS30216] gi|151361883|gb|ABS04886.1| DNA polymerase III, delta subunit [Kineococcus radiotolerans SRS30216] Length = 343 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 13/309 (4%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74 + V + GS++ L + F ++A QK W Sbjct: 22 PHDLAPAPVVLLAGSEEHL-ADRALSALTTRMRELDPTFERTDVSAAGYQKGQLATW--- 77 Query: 75 NSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 S SLF ++ ++L++ + ++ + + + +++++ K + +A Sbjct: 78 TSPSLFDERSLVLVDGVDVASDAFVEDVLDYLTAPAETVVLVLRHRGGNKAKKVLDVARG 137 Query: 134 FTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 V +SC P +DL+ + ++ I +A + L+A LG D + +L Sbjct: 138 VPGVAEVSCQPLKRDQEKVDLVLADVRRARRRIDLDAARALVAALGSDLGELVAAVDQLL 197 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D ITE V E+ +A ++G+ A++L A+ +P ++ Sbjct: 198 --TDTDGTITEDAVHRYHGGRREATGFEVADAAVEGRTGQALVLVRHAAATGVPPVLVVA 255 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + + L ++ + + + I +R++L + + E + Sbjct: 256 ALAARLRQLARVAAAGRGRSADVARDLGMAPWLIDRARRDLL-----HLSPEGLGEAILA 310 Query: 313 IDHRIHLAR 321 + H + Sbjct: 311 VAAADHAVK 319 >gi|320546391|ref|ZP_08040706.1| DNA-directed DNA polymerase III delta subunit [Streptococcus equinus ATCC 9812] gi|320448776|gb|EFW89504.1| DNA-directed DNA polymerase III delta subunit [Streptococcus equinus ATCC 9812] Length = 368 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 110/338 (32%), Gaps = 27/338 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + + D F + ++ + + + + S Sbjct: 41 ITVVTGEDLGQFSQLKERMVERVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 93 Query: 79 LFSKKKIILIENL----STEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + +K LD E + + +II + ++ L Sbjct: 94 FFADQKVVIFDNLLDITTAKKSYLDEKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 153 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L ++ + + LL D + Sbjct: 154 KILKRDAKI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 211 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS- 247 L SY +D IT + + I T I ++ + GKI A L Sbjct: 212 TFLKSYK-KDGHITGEDINQAIPKTLQDNIFDLTQFVLSGKIDEARELIRDLRLQGEDEI 270 Query: 248 --HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 A++ G + F + + + + + + P + R + Sbjct: 271 KLIAIMLGQFRTFLQVSILASQGKTEQQMVVSLSDYLGRRVNPYQVKFAVRDSRTLSMTF 330 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 +++ + + + + Y + + IL IA Sbjct: 331 LKKAIAILIETDYAIKTGTYDKDYLFDVAILKIAHEHR 368 >gi|110598255|ref|ZP_01386531.1| DNA polymerase III, delta subunit [Chlorobium ferrooxidans DSM 13031] gi|110340170|gb|EAT58669.1| DNA polymerase III, delta subunit [Chlorobium ferrooxidans DSM 13031] Length = 346 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 24/226 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLF 80 V+ YG + L E+ K + + D + +L ++ ++ + +F Sbjct: 15 PVYFLYGPESYLKEEVAEMIKTALFPSEIDAAANTHILYGPDLT--PGELVSKASEYPMF 72 Query: 81 SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 ++K++I++ +K+ + + +++I +++I+K K Sbjct: 73 TQKQLIIVRQFEKIKKPPTKELQKQHEEKFSRYMQNPADFTVLVIDADQIEK-----KEQ 127 Query: 132 EKFTSVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 EK + Y + + +A + A + +E+ Sbjct: 128 EKPPFS-TLKMYRKEFPVIKNPDLFASDRAKSSGWEFEPDALKAFTAYIQPSAREICHEI 186 Query: 189 QKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 K+ Y LIT V D + + + E+ A + Sbjct: 187 DKIIMYASARTGLKLITAADVLDCVGISRTYNVFELEKALAARNLR 232 >gi|303228965|ref|ZP_07315775.1| putative DNA polymerase III, delta subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516379|gb|EFL58311.1| putative DNA polymerase III, delta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 326 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 113/329 (34%), Gaps = 53/329 (16%) Query: 21 HFVFIFYGSDKGLIFELINQF---KKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINS 76 H V++ YG++ LI E +F KN+ + HD + S ++ Sbjct: 2 HQVYLIYGNEPQLIEEEKQKFFLSHKNLDVRVLHD------------EAGPSKISEQLME 49 Query: 77 TSLFSKKKIILIENLSTEKKVL-------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 SLF K+ + NL KK D L E+++ ++ ++I +++ + L++ Sbjct: 50 DSLFGDAKVFCLINLPILKKAGQKESQEWDALAELLMNYTGDNPVLIIYHDM-VDKRLKQ 108 Query: 130 IAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIAS 184 + +I C L+ I + +++ + L L D + Sbjct: 109 ---NKKILESIPNKECKRLEGDDLLMWIRQYCTSNGYTLTPDGHDYLSHLLELWQDVPVA 165 Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 R E + I + + + I A ++ + + L F + Sbjct: 166 FMRTEFDRYFLLLGNHKKIDRSFLMEHSSNYGAKNIFTFKEALLKQDVNTLLELFPFMFS 225 Query: 243 SKM--PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRN 292 K + + G L+ L+ + + ++ +++ + I + Sbjct: 226 YKEIDRAMGYIEGQLR----LQLLVSECRAAGMTAKQVENFCKENGASYKPYPI----KL 277 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + S RI + ++ L + I +R Sbjct: 278 AYEASSRI-SIKALKALLKGLYEVILDSR 305 >gi|256396180|ref|YP_003117744.1| DNA polymerase III subunit delta [Catenulispora acidiphila DSM 44928] gi|256362406|gb|ACU75903.1| DNA polymerase III, delta subunit [Catenulispora acidiphila DSM 44928] Length = 335 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 82/252 (32%), Gaps = 7/252 (2%) Query: 73 EINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 E+ S SLF + +++++ + + L + + +++ N K L Sbjct: 61 ELVSPSLFGESRVVVVRSAQDLAAEDVTMLTSALGELADEITLVVVHNGGVKGKALLTAV 120 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 EK + + + + ++ I++EA + LL +G + +L Sbjct: 121 EKAGAARVDVAKVTKPTERIAFLRDEFKAAKRQITEEAARALLDAVGNELRELAAAAAQL 180 Query: 192 SSYCLEDIL--ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + ED I E V + + + + G+ A+ + LA+ Sbjct: 181 IADTAEDGKAPIDETVVAKYYSGRAEVSGFTVADLAVDGRTAQALEQLRWALATGTAPVL 240 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + + + + + P K + +++ +R W + + Sbjct: 241 ITSALAAGVRSV--ARVASAPRGARPADLARDLGMP--PWKIDKVRQQVRGWTPDGIGTA 296 Query: 310 LHKIDHRIHLAR 321 L + + Sbjct: 297 LLAVAEADAAVK 308 >gi|325577503|ref|ZP_08147865.1| DNA polymerase III subunit delta [Haemophilus parainfluenzae ATCC 33392] gi|325160607|gb|EGC72731.1| DNA polymerase III subunit delta [Haemophilus parainfluenzae ATCC 33392] Length = 345 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 115/313 (36%), Gaps = 15/313 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G+D L+ E + ++ + D + + ++ + S LF Sbjct: 19 KVYFLVGTDPLLLSESEDLIHQSALLQGFDEKNQITID---TNTDWPALIEASQSMGLFF 75 Query: 82 KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136 K++ ++ +L L + I + ++++ ++ K ++ + Sbjct: 76 NKQVFILNLPENLTTLLQKNLLQFISGLNEDSLLVLTLPKLSKAAEKQEWFIQANQLEPQ 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++C N L ++ S +EA Q+L + + +A + LQ L Sbjct: 136 AIIVNCQTPNSEQLSRWVKHRTKNMGLSADEEAIQLLCYSYENNLLALKQALQLLDL-LY 194 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +T VK ++ + V + I+A + GK + + A + LL + Sbjct: 195 PDHKLTYNRVKSVVEQSSVFTPFQWIDALLSGKANRSKRILRGLQAEDVQPVILLRTLQR 254 Query: 257 KFQLLE-----KIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310 + L ++ ++ + + ++ I +R++ +++ + E L Sbjct: 255 ELLTLLELTKPQLRNPSLQMSLPTQTLKADFDRLKIWQNRRHLYTAAIQRLTYQKLFEIL 314 Query: 311 HKIDHRIHLARKK 323 ++ + +++ Sbjct: 315 QELADIERITKQE 327 >gi|121607953|ref|YP_995760.1| DNA polymerase III subunit delta [Verminephrobacter eiseniae EF01-2] gi|121552593|gb|ABM56742.1| DNA polymerase III, delta subunit [Verminephrobacter eiseniae EF01-2] Length = 351 Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 95/300 (31%), Gaps = 16/300 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G + L E ++ + + S + + S S+SLF+ Sbjct: 18 PLYALHGDEPLLQQEAVDAIRAAARARGYTERSAFTVAGAHF--DWSAVLAAGGSSSLFA 75 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136 +++I+ I K L+ + N + ++ + K Sbjct: 76 ERQIVEIRIPTGKPGKDGSAALQRLAASAQGNDNTLTLVLLPRLDKAMRAGDWFAALQAH 135 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKL 191 I P + L + + L + + + + + G+ +A+ E+QKL Sbjct: 136 GSTIQIDPVERSALPQWLAQRLAAQGQRVLAGEEGQRTLRFFADRVEGNLLAAHQEIQKL 195 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + +T+ V+ + D + ++ + + G+ + D A+ + Sbjct: 196 AL-LHPAGELTQAQVEAAVLDVARYDVFKLSESVLAGQTARVQRMLDGLQAAGENEVLVH 254 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + L+++ + + I + + + L + + L Sbjct: 255 WALAEDIRALKRVKDAMNAGRPLPLALRENR---IWGPRERLFERILPQASDAALARLLQ 311 >gi|153839851|ref|ZP_01992518.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ3810] gi|149746623|gb|EDM57611.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ3810] Length = 222 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 79/209 (37%), Gaps = 9/209 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDTSLDWNQVYDCFQALSLFSS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139 +++I +E + L+ + + +++I ++ K K K + Sbjct: 76 RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134 Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 +SC + L ++ +++ Q+L G+ A L+KL+ D Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQ 227 +T +++ + + I+A + Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLA 222 >gi|228988895|ref|ZP_04148944.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770809|gb|EEM19325.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 333 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 111/308 (36%), Gaps = 27/308 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F+ YG ++ I + + + + FS+ + + E I+ + SL Sbjct: 13 LFVIYGLEQYTIDKELTKIINKDLESDTIDFSVNIYDCDETAVQIAI--EDAEMLSLMMG 70 Query: 83 KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 K ++++N + +K D L++ I + +I K + +KI + Sbjct: 71 PKKVVVKNAMFLTGQKMKKDEHDMDILQKYIDSPNEDTDLIFVVPYEKLDQR-KKIVKSL 129 Query: 135 TSVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 I L + I+E +S EA + L +G + +ELQ Sbjct: 130 KEKAIII----EAAVLKSIEAKKWIKEESENLNIELSSEAIEHLYMMVGSNLQMLSSELQ 185 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K++ Y E + + + ++ T + II + A + K+ + A Sbjct: 186 KIALYVGEKRKVDTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIA 245 Query: 250 LLHGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + ++F + K H+ ++ + P ++ R +++ ++ Sbjct: 246 IAAMISKQFSRMLEVKAHLHNGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQ 300 Query: 308 ETLHKIDH 315 + LH++ Sbjct: 301 QILHRMSQ 308 >gi|282850247|ref|ZP_06259626.1| putative DNA polymerase III, delta subunit [Veillonella parvula ATCC 17745] gi|282579740|gb|EFB85144.1| putative DNA polymerase III, delta subunit [Veillonella parvula ATCC 17745] Length = 325 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 109/321 (33%), Gaps = 42/321 (13%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 6 LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK-IAEKFTS 136 + +I L E++++ ++ I++ +++ K K I EK + Sbjct: 58 VFCLVNLPIIRKSGKNSDAWVPLYELLMEYNGDNPIVLIYHDMIDKRIKQNKEILEKIPN 117 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192 C L+ I + ++ +A++ + L + S R E + Sbjct: 118 H---QCKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYF 174 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250 + +IT++ +++ D I A ++ I + L F K + + Sbjct: 175 LQITGEKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 234 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRNILQESLRIWN 302 + G L+ L+ + +S + I + I + + S RI + Sbjct: 235 IEGQLR----LQLLVSECRQVGMSVQAIQNLCKDHNSSFKPYPI----KLAYEASPRI-S 285 Query: 303 KNLVRETLHKIDHRIHLARKK 323 +R L + I +R Sbjct: 286 IKALRALLKGLYEIILDSRSS 306 >gi|238019268|ref|ZP_04599694.1| hypothetical protein VEIDISOL_01132 [Veillonella dispar ATCC 17748] gi|237863967|gb|EEP65257.1| hypothetical protein VEIDISOL_01132 [Veillonella dispar ATCC 17748] Length = 330 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 112/321 (34%), Gaps = 42/321 (13%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 11 LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 62 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI--KKNNTLRKIAEKFTS 136 + +I L E+I++ N+ I++ +++ K+ + I +K + Sbjct: 63 VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGNNPILLIYHDMIDKRIKQNKAILDKIPN 122 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192 C L+ I + ++ +A++ + L D S R E + Sbjct: 123 H---QCKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQDVPVSFMRTEFDRYF 179 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250 + D +IT++ +++ D I A ++ I + L F K + + Sbjct: 180 LQIIGDKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 239 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWN 302 + G L+ L+ + + +S + I + I + + S RI + Sbjct: 240 IEGQLR----LQLLVSECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-S 290 Query: 303 KNLVRETLHKIDHRIHLARKK 323 +R L + I +R Sbjct: 291 IKALRALLKGLYEIILDSRSS 311 >gi|255994727|ref|ZP_05427862.1| DNA polymerase III, delta subunit [Eubacterium saphenum ATCC 49989] gi|255993440|gb|EEU03529.1| DNA polymerase III, delta subunit [Eubacterium saphenum ATCC 49989] Length = 347 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 32/250 (12%) Query: 37 LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-- 94 ++++ KK F V + +I + + SKKK+I+I+ E Sbjct: 39 IVDRIKKKHVDPDMLDFDYTVYDGSVAASDIEM---STGTFPMGSKKKLIVIKEAFKEAG 95 Query: 95 -----KKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVLAISCYPDN 146 K ++ L EI I++I S ++ + +RK+ A + D Sbjct: 96 KSLAVKSEIEKLTEIATNLEGEVILLIGSKKLGGAVVSAPIRKL-------KAAGEFFDI 148 Query: 147 KI----HLMDLIEESLLIGQKSISKEAKQILLANL-------GGDRIASRNELQKLSSYC 195 + + + K+IS +A + L++ L G D + NE KL+ Y Sbjct: 149 GRLSLSQANSFVRKRVEECGKTISYQAAEFLISELKYGSRDSGEDLYSVANEAIKLA-YS 207 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + I + + + + + +++A GK A+ L + +LL + Sbjct: 208 TDKAEIKKDDISKVTSKSLENNVFLLLDAIGYGKKDKALRLLRDLMIPGKNEFSLLGLII 267 Query: 256 QKFQLLEKIH 265 + ++L I Sbjct: 268 SQLEMLLAIR 277 >gi|228949803|ref|ZP_04112013.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809861|gb|EEM56272.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 333 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 109/303 (35%), Gaps = 17/303 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F+ YG ++ I + + + + FS+ + + E I+ + SL Sbjct: 13 LFVIYGLEQYTIDKELTKIINKDLESDTIDFSVNIYDCDETAVQIAI--EDAEMLSLMMG 70 Query: 83 KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 K ++++N + +K D L++ I + +I K + + + Sbjct: 71 PKKVVVKNAMFLTGQKMKKDEHDMDILQKYIDSPNEDTDLIFVVPYEKLDQRKKVVKLLK 130 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I I I+E +S EA + L +G + +ELQK++ Y Sbjct: 131 EKAIIIEAAVLKSIEAKKWIKEESENLNIELSSEAIEHLYMMVGSNLQMLSSELQKIALY 190 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 E + + + ++ T + II + A + K+ + A+ Sbjct: 191 VGEKRKVDTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIAIAAMI 250 Query: 255 LQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++F + K H+ ++ + P ++ R +++ +++ LH+ Sbjct: 251 SKQFSRMLEVKAHLHNGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQQILHR 305 Query: 313 IDH 315 + Sbjct: 306 MSQ 308 >gi|308095341|ref|ZP_07663249.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus Peru-466] gi|308089336|gb|EFO39031.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus Peru-466] Length = 192 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 5/163 (3%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 +++ Q+L G+ A L+KL+ D +T +++ + + Sbjct: 8 RALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPDGELTVVRLEEALSRHNHFTT 66 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 I+A + GK A + A + + L+ ++F L +H ++ + + ++ Sbjct: 67 FNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEFNQLLSMH--QDLTQMPISQV 124 Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 +K + KR + +L + + + + + A+ Sbjct: 125 FEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEIKAK 165 >gi|237750842|ref|ZP_04581322.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879] gi|229373287|gb|EEO23678.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879] Length = 329 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 121/358 (33%), Gaps = 49/358 (13%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M KF+ + YG LI N K ++ + Sbjct: 1 MTRAMLDKFLLSGVP------RAILLYGDSDFLISYYSNMILKKLNS------ECRRMYF 48 Query: 61 LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIK- 117 E + N + SLF I + + +K++ D L ++++ N +I++ Sbjct: 49 EEY--DHQEVLNCLGVNSLFGGVNILALKLYATLNKKQIQDIL--YMLEHNANSFLIVEF 104 Query: 118 -----------SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166 + K L K K + + YP + ++ ++ + Sbjct: 105 LKSPTITDAEYAKRFKAMAALFKPTAKLKDIFEVRLYPPFRDDMVKILYNRACELGLKVD 164 Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 LL D + NEL K Y IT Q ++++ + +E ++N Sbjct: 165 SSLLNFLLDVQHDDLAIAHNELTKFIYY----ETITPQLIEELSYSLGDVKLESLLNCLF 220 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKN 285 + + ++ M + LL + F +L K++ K N+ ++++ Sbjct: 221 DKQGH-LGLILQTLHDEGMDNMELLREITRYFYILFKLYGHSKTHGNMDSKEVLGYKAPP 279 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + +W + ++ T K + I+ R ++ K+++ Q ++ I Q Sbjct: 280 QLFN----------VWQRRSLKITTEKYLMLFDIINTWRVQQLQGKDVVMQHLIAIQQ 327 >gi|256832784|ref|YP_003161511.1| DNA polymerase III, delta subunit [Jonesia denitrificans DSM 20603] gi|256686315|gb|ACV09208.1| DNA polymerase III, delta subunit [Jonesia denitrificans DSM 20603] Length = 330 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 117/326 (35%), Gaps = 17/326 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G++ GL + IS ++ + S SLF+ Sbjct: 20 PIVLIQGTE-GLFVDRA--LTALISQARQADPAVERTTLAAATYQPQMLSV-LTSPSLFN 75 Query: 82 KKKIILIEN-LSTEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + ++I+I++ +T ++ + E + + + +I++ ++ L + + V+ Sbjct: 76 EPRLIIIDHCEATTDALITDVPEYLTQPADDVWLILVHRGGVRGKKMLDAVKKAGVPVVQ 135 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + + ++ S +A + L+ LGGD +L D Sbjct: 136 CEPMKKDADKIAF-VTKEFQRARRQASADAVRALVGALGGDVRELAAACDQLI--SDTDG 192 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 L+T+ V+ + ++ +A + G A+ L +A+ L+ K + Sbjct: 193 LVTDSVVERYYGGRVEVTGFKVADAAVLGDTAQALTLLRHAMATGADPVPLVAALAMKLR 252 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L K+ +++ + + P + + + L W + + + + + + Sbjct: 253 ALAKVSGMRQGK--------TAKDTGLAPWQIDRAKRDLAGWGPDGLAQAICAVAEADEM 304 Query: 320 ARKKKYLEKNIIFQTILYIAQTACKN 345 + + I + + +A A + Sbjct: 305 VKGGGRDPEYAIERAVRIVADLAGRR 330 >gi|189501117|ref|YP_001960587.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides BS1] gi|189496558|gb|ACE05106.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides BS1] Length = 348 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80 ++ F+G + + EL + +KN D + VL ++ + + +F Sbjct: 15 PIYFFHGPESFMKEELTDLVRKNTFPAEEDAAVNTTVLYGQDVT--PGEIVSMASEFPMF 72 Query: 81 SKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + +K+++++ + +K +D + I+I+ +++I K + Sbjct: 73 TARKLMIVKQFDKFKKQGSRDKQKLHIDQFIRYTNSPALSTILILDADQIDKRD-----L 127 Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 +K D + SL EA + A + E Sbjct: 128 QKAPFRELQPFRHDFPLVTNPDIFASDRASL--YGWEFEPEALKAFSAYIQPSSREIARE 185 Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 ++KL Y + IT V + + + + E+ A + Sbjct: 186 VEKLVMYASSKSNEKRITGADVFECVGISKQYNVFELEKALAGKNVR 232 >gi|85713009|ref|ZP_01044047.1| DNA polymerase III, delta subunit [Idiomarina baltica OS145] gi|85693178|gb|EAQ31138.1| DNA polymerase III, delta subunit [Idiomarina baltica OS145] Length = 361 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 112/309 (36%), Gaps = 11/309 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +G + L + + +++ A + + + + S SLF Sbjct: 19 PVILLFGDELLLQQDCDEIIRHSLNQQLSSTPEYQRWRA-DAEFDWGQLSLQQQSMSLFG 77 Query: 82 KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138 I I + K D L + + + + ++I+K +KK + + L Sbjct: 78 SFTILDIELPEAKPGKPGSDALVDYVKQPNPDQLLILKGPRLKKEQLNSRWFKALAAQAL 137 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + + + L + + Q +S+ A ++L G+ A E K S Sbjct: 138 QVKIFTPKRSQLPRFVMQRAQRHQLQLSQTAAEVLSNWFEGNLFALEQEFIKWSL-LPNP 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I E+ + + + D+ + + + + AI + L + + + L ++ Sbjct: 197 PQIDEKQIYERVADSSQFDVFGLQESIAAQDLSQAIHRLERLLDNDIELNILNWMLQREV 256 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDH 315 Q++ ++H+ + + + + ++ + +++ + N +++ + +I+ Sbjct: 257 QIISQLHVNAQ-HGLDHQAVFKQF--AVWSSQQSAYSARASTHSDNSIKQMIALAERIER 313 Query: 316 RIHLARKKK 324 I R + Sbjct: 314 AIKGDRDEP 322 >gi|332670875|ref|YP_004453883.1| DNA polymerase III subunit delta [Cellulomonas fimi ATCC 484] gi|332339913|gb|AEE46496.1| DNA polymerase III, delta subunit [Cellulomonas fimi ATCC 484] Length = 338 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/327 (11%), Positives = 108/327 (33%), Gaps = 17/327 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L +++ + + L+A E + S SLF+ Sbjct: 25 PIVLVSGPEDLLAERAVDRLVERARAA-DPGVEVSRLDAAEYAVGTLRV---VTSPSLFA 80 Query: 82 KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139 + +++++ L ++ + + +++++ + + L + + V Sbjct: 81 EDRVVVVTGLERATDDLVADVTAYLEAPADGVVVVLRHAGGQRGKKLLDAL--RTRRVPT 138 Query: 140 ISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 ++C + + L + +A + L+ +G D +L Sbjct: 139 VTCDVVKSDADKSSFVSAELRRAGRRADAQAVRALVDAVGSDLRELAAACSQLV--ADTT 196 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 LI V+ + +A I G A+ L LA+ + ++ K Sbjct: 197 GLIGPDVVERYYGGRIEATGFRVADAAIAGSSGQAVALLRHALATGVDPVPIVAALAAKL 256 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 ++L K+ ++ + ++ + P + + LR W + + + Sbjct: 257 RVLAKVAAVRGRGTAAVREL------GLAPWQTDRALADLRRWTPEGLALAISSVAQADA 310 Query: 319 LARKKKYLEKNIIFQTILYIAQTACKN 345 + + + + + +L +A + Sbjct: 311 EVKGESRDPRFAVERAVLRVAAASGTT 337 >gi|197122950|ref|YP_002134901.1| DNA polymerase III delta [Anaeromyxobacter sp. K] gi|196172799|gb|ACG73772.1| DNA polymerase III delta [Anaeromyxobacter sp. K] Length = 465 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%) Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163 H+++I + +I + K + + L ++E L K Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 + + + L +G D +E+ KL++Y + +I V ++ + N Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 A + A+ + D +A LL + L + Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLAATVRRLVVERERARAA 375 >gi|332289543|ref|YP_004420395.1| DNA polymerase III subunit delta [Gallibacterium anatis UMN179] gi|330432439|gb|AEC17498.1| DNA polymerase III subunit delta [Gallibacterium anatis UMN179] Length = 346 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 122/316 (38%), Gaps = 15/316 (4%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ ++ G D LI E Q + +V+++ + +T + ++ + L Sbjct: 18 TYPAYLLVGQDPLLIEESKYQLFQFGKQQGATQKQEIVIDS---NTDWATLFTDLQTFGL 74 Query: 80 FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 FS+++I L ++ L++++ + I I + ++ + + + Sbjct: 75 FSQQQIFLFTLPDNINAQLQQQLQQLVSLLHSDIIAIFQIAKLTTTIEKQAWFKTLEQIK 134 Query: 139 AIS--CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + C L I++ + + SI EA ++L N + A + LQ + Sbjct: 135 TLQINCQTPTLEQLPQWIQQRAKMMELSIDNEAIELLAYNYENNLAALKQTLQLMQL-LY 193 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFL 255 IT + I + V + I+A +QGK Y I + + + LL Sbjct: 194 PQQKITLINAGQCIEQSSVFTPFQWIDAILQGKKYRCIRILEQLQNEGDVQPVVLLRILQ 253 Query: 256 QKFQLL------EKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRE 308 ++ LL +KI I ++ + + QK ++ I +R + +++ N + + + Sbjct: 254 KELLLLLRLGSDDKIKIENTQQMLNSQLLRQKFDQYKIWKNRRPLYSAAIQRLNYHRLYD 313 Query: 309 TLHKIDHRIHLARKKK 324 + + +++ Sbjct: 314 AIQHLAAIEKAIKQQG 329 >gi|325977813|ref|YP_004287529.1| DNA polymerase III subunit delta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177741|emb|CBZ47785.1| DNA polymerase III subunit delta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 353 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 101/306 (33%), Gaps = 29/306 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + D F + ++ + + + + S Sbjct: 26 ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 78 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + K L E + + +II + ++ L Sbjct: 79 FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 138 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L ++ + + LL D + Sbjct: 139 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 196 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L SY +D IT + I T I ++ + GKI A L Sbjct: 197 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 255 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304 L+ L +F++ ++ I+ + ++ + + + P + R + Sbjct: 256 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 314 Query: 305 LVRETL 310 +++ L Sbjct: 315 FLKKAL 320 >gi|47459195|ref|YP_016057.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K] gi|47458524|gb|AAT27846.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K] Length = 310 Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 119/320 (37%), Gaps = 24/320 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG++ LI+ I + + E + NI NEI S LFS Sbjct: 1 MYFIYGNENYLIWNQIKKLISKSKTEP--------IIFDE-ESNIYELINEIESYDLFSN 51 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNH------IIIIKSNEIKKNNTLRKIAEKFTS 136 +K I+++NL KK L EI+I ++ N I +++ ++I N+L + Sbjct: 52 EKTIIVKNLWLLKKEDKKLSEILISSLENINSKYKIIFLLEEDKINNKNSLIHFLLNNSK 111 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 V + Y N L+ +IE+ ++ + +IS EA + + D E+ KL Sbjct: 112 VDNVKKY--NPKELISVIEKIIVAKKGTISHEAIIEFILKVPNDLRIIIQEIDKLLLLT- 168 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 IT++ V D INA + + + LL Sbjct: 169 --KDITKEIVISETSDYFESDAFSFINAINEFDFKKIYETLQEKIINYEEIGQLLGQLNS 226 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 L IH + + +KI ++ + R L+ + + K + Sbjct: 227 HLNLSFLIHTNFQL-GKNLKKIEEQYNIH-HFRLRKAFD-FLKKIGYKNLVYLISK-NAE 282 Query: 317 IHLARKKKYLEKNIIFQTIL 336 + A K +++ I + ++ Sbjct: 283 LDFAIKNGSIDEIIGIKNLI 302 >gi|294793760|ref|ZP_06758897.1| putative DNA polymerase III, delta subunit [Veillonella sp. 3_1_44] gi|294455330|gb|EFG23702.1| putative DNA polymerase III, delta subunit [Veillonella sp. 3_1_44] Length = 330 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 110/317 (34%), Gaps = 38/317 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 11 LIYGDEPQLIEEEKRKFLSAYPDIP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 62 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +I L E+I++ ++ I++ +++ + +++ E + Sbjct: 63 VFCLVNLPIIRKSGKNSDAWVPLYELIMEYDGDNPIVLIYHDM-IDKRIKQNKEILNKIP 121 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194 C L+ I + ++ +A++ + L + S R E + Sbjct: 122 NRECKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYFLQ 181 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252 + +IT++ +++ D I A ++ I + L F K + + + Sbjct: 182 ITGEKVITKEFLEENGSDYGAKNIFTFKEALLKKDIDTLLELFPFMFGYKELDRAMSYIE 241 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304 G L+ L+ + + +S + I + I + + S RI + Sbjct: 242 GQLR----LQLLVSECRQAGMSVQAIQNLCKDYDSSFKPYPI----KLAYEASPRI-SIK 292 Query: 305 LVRETLHKIDHRIHLAR 321 +R L + I +R Sbjct: 293 ALRALLKGLYEIILDSR 309 >gi|282877562|ref|ZP_06286377.1| DNA polymerase III, delta subunit [Prevotella buccalis ATCC 35310] gi|281300134|gb|EFA92488.1| DNA polymerase III, delta subunit [Prevotella buccalis ATCC 35310] Length = 339 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 97/264 (36%), Gaps = 10/264 (3%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + I ++ + +N+ F+ ++ +I N + + + + Sbjct: 22 PIYILMGEESYFIDKISDYIAENVLQPEERDFNQNIVFGSDI--NAAQIVDLAKGYPMMA 79 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139 + ++++++ + D +E+ + + + I+++ K+ I + L I + Sbjct: 80 EYRVVIVKEAQNLRG-TDVIEKYLKNPVKSTILVLCHKNGTIDRRKKL--IGRSEALGVV 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + L I L +I ++ ++ ++G D + L KL ED Sbjct: 137 FESKKMRESELPSFIASYLKQKNVTIDYKSTAMIADHIGSDLNRMISVLDKLLISLPEDN 196 Query: 200 LITEQHV-KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 + V + I + E+ +A + ++ A + +F + +A L Sbjct: 197 RVVVPEVIEKQIGVSKDFNAFELRSALVNRDVFKANQIIKYFDNNPKAGSIYAFLPLLFS 256 Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280 FQ L + + + + + Sbjct: 257 YFQNLMIAYYAPSKNENAVAQFLD 280 >gi|284990148|ref|YP_003408702.1| DNA polymerase III subunit delta [Geodermatophilus obscurus DSM 43160] gi|284063393|gb|ADB74331.1| DNA polymerase III, delta subunit [Geodermatophilus obscurus DSM 43160] Length = 330 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/317 (10%), Positives = 97/317 (30%), Gaps = 14/317 (4%) Query: 33 LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL- 91 L+ + + H L L A + + + + + SLF +++++ + Sbjct: 21 LLRSRAVSAVRAAVLERHPDAELHELPAQGL--PVGQLAD-VLAPSLFGTHRLVVVTGVH 77 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151 +++ L + +++ + K+N TL K + + + + Sbjct: 78 EAAGALVEALTGYTKDPDPDLTLVVVHSGGKRNETLVKAFTAAGAAVDDCPKVSSVGDRI 137 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + + I+ +A L+ +G D + +L S I V Sbjct: 138 AFVRNEVRSAGGRITPDAASALVEAIGADLRQLSSAATQLVSDFGGS--IDADAVARFHR 195 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + + + G ++ + + L + + + + Sbjct: 196 GQAEVSGFTVAERVLVGDRQGSLEMLRWALQRGVAHVLIADAIA---DGVRTAARVSSVR 252 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHLARKKKYLEK 328 + + + + + P K Q R W+ +++ L +++ + A Sbjct: 253 SSNPGDLARTLKMP--PWKVKRAQSQARGWSIEGLQQALGVAAELNADVKGAAASADYAL 310 Query: 329 NIIFQTILYIAQTACKN 345 + I+ I + + Sbjct: 311 ESAIRRIVAIRRETGRG 327 >gi|239621304|ref|ZP_04664335.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515765|gb|EEQ55632.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 329 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 15 PVTVVPGGDSYLNDARTKALCAQALKARPDA-ELIELDATSADQYA---FDEAVSPSLLS 70 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL ++K+ + L K+ ++I +K + ++ + Sbjct: 71 DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 130 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L ++ E + + A Q L++ LGG ++L + Sbjct: 131 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 188 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 189 FDDNPMGLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 248 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 249 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 301 Query: 316 RIHLARKKK 324 ++ Sbjct: 302 ADEQSKTNG 310 >gi|86157739|ref|YP_464524.1| DNA polymerase III subunit delta [Anaeromyxobacter dehalogenans 2CP-C] gi|85774250|gb|ABC81087.1| DNA polymerase III, delta [Anaeromyxobacter dehalogenans 2CP-C] Length = 465 Score = 61.9 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%) Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163 H+++I + +I + K + + L ++E L K Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 + + + L +G D +E+ KL++Y + +I V ++ + N Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 A + A+ + D +A LL + L + Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLASTVRRLVVERERARAA 375 >gi|326773587|ref|ZP_08232870.1| DNA polymerase III, delta subunit [Actinomyces viscosus C505] gi|326636817|gb|EGE37720.1| DNA polymerase III, delta subunit [Actinomyces viscosus C505] Length = 318 Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 105/300 (35%), Gaps = 18/300 (6%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111 + L A + + + S SLF + +++ + L T+ + D + + + Sbjct: 34 EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVGAADPEV 90 Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170 +I+ + + L I K + I C + L+ + +SI+ EA Sbjct: 91 SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAVKSAKDKSSLVVADVRRAGRSIAPEAV 148 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 L+ LG D + + +L I+ HV+ + +A G Sbjct: 149 GALVDALGSDLRELCSAVDQLL--ADTQGTISVDHVRTYYAGRIEATGFTVADAAAAGNT 206 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 AI +A+ A++ K + L ++ + + + E + P + Sbjct: 207 PAAITALRHAVATGTDPVAIVAALAMKVRQLARVAA-------AGGRRMSPAELGMAPWQ 259 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350 + + L+ W+ + + ++ + A+ + + +L I A ++ + + Sbjct: 260 VDRARRELQGWSDDALATSILAVARADAEAKGASRDPVYAVERAVLTICN-ARRSGSRRR 318 >gi|303231441|ref|ZP_07318172.1| putative DNA polymerase III, delta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302513878|gb|EFL55889.1| putative DNA polymerase III, delta subunit [Veillonella atypica ACS-049-V-Sch6] Length = 326 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 113/329 (34%), Gaps = 53/329 (16%) Query: 21 HFVFIFYGSDKGLIFELINQF---KKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINS 76 + V++ YG++ LI E +F KN+ + HD + S ++ Sbjct: 2 NQVYLIYGNEPQLIEEEKQKFFLSHKNLDVRVLHD------------EAGPSKISEQLME 49 Query: 77 TSLFSKKKIILIENLSTEKKVL-------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 SLF K+ + NL KK D L E+++ ++ ++I +++ + L++ Sbjct: 50 DSLFGDAKVFCLINLPILKKAGQKESQEWDALAELLMNYTGDNPVLIIYHDM-VDKRLKQ 108 Query: 130 IAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIAS 184 + AI C L+ I + +++ + L L D + Sbjct: 109 ---NKKILDAIPNKECKRLEGDDLLMWIRQYCTSNGYTLTPDGHDYLSHLLELWQDVPVA 165 Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 R E + I + + + I A ++ + + L F + Sbjct: 166 FMRTEFDRYFLLLGNHKKIDRSFLMEHSSNYGAKNIFTFKEALLKQDVNTLLELFPFMFS 225 Query: 243 SKM--PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRN 292 K + + G L+ L+ + + ++ +++ + I + Sbjct: 226 YKEIDRAMGYIEGQLR----LQLLVSECRAAGMTAKQVENFCKENGASYKPYPI----KL 277 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + S RI + ++ L + I +R Sbjct: 278 AYEASSRI-SIKALKALLKGLYEVILDSR 305 >gi|313144570|ref|ZP_07806763.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818] gi|313129601|gb|EFR47218.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818] Length = 342 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 25/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG D ++ + +++ F N + I ++ SLF Sbjct: 25 RASLLYG-DSFMVGYYGKKIAQSLKSEEKTTFYFDEYNNISIN-------TLLSQGSLFG 76 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-------IKSNEIKKN-NTLRKIAE 132 +++++ N K ++ + N N +II S + ++ + Sbjct: 77 TSSLVVLKINHRLSKADIELFLHSLSANTHNALIIEYYQAQNKSSGDYMRDCKGIVGYFH 136 Query: 133 KFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 SV+ + + N + ++E I +L D S NEL Sbjct: 137 HPKMPKNSVVEVRFFEPNMRECIGFLQERSKELGLKIEDRILTQILNIQNNDIALSLNEL 196 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +K S Y I V + IEE+ A + I + + Sbjct: 197 EKFSIYAG--KSIDMSEVNLLCDGVGSFSIEELCCAVM--DKKPFIHILQNIYEEGVNEI 252 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 ++ + F L + + I Sbjct: 253 MMIGEIQRFFYQLFLFFAYAKSYGSINAREILGYNPPNH 291 >gi|224438130|ref|ZP_03659065.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818] Length = 333 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 25/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG D ++ + +++ F N + I ++ SLF Sbjct: 16 RASLLYG-DSFMVGYYGKKIAQSLKSEEKTTFYFDEYNNISIN-------TLLSQGSLFG 67 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-------IKSNEIKKN-NTLRKIAE 132 +++++ N K ++ + N N +II S + ++ + Sbjct: 68 TSSLVVLKINHRLSKADIELFLHSLSANTHNALIIEYYQAQNKSSGDYMRDCKGIVGYFH 127 Query: 133 KFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 SV+ + + N + ++E I +L D S NEL Sbjct: 128 HPKMPKNSVVEVRFFEPNMRECIGFLQERSKELGLKIEDRILTQILNIQNNDIALSLNEL 187 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +K S Y I V + IEE+ A + I + + Sbjct: 188 EKFSIYAG--KSIDMSEVNLLCDGVGSFSIEELCCAVM--DKKPFIHILQNIYEEGVNEI 243 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 ++ + F L + + I Sbjct: 244 MMIGEIQRFFYQLFLFFAYAKSYGSINAREILGYNPPNH 282 >gi|325473508|gb|EGC76702.1| hypothetical protein HMPREF9353_02191 [Treponema denticola F0402] Length = 202 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 10/197 (5%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 L I EA LL + + A + L Y + I +++++ + Sbjct: 2 RSFLFREGIEIEDEAVDELLELVENNTDALKTACSHLVLYFQKGSHIGQENIEKLFAHNK 61 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASK-MPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + NA G + A+ ++ + SK ++ G F+ L+ H I + Sbjct: 62 EETPFSLFNALTMGNLETALSISQKIILSKNSSPVQIIAGLSYCFRRLQDWHKIHRDNEY 121 Query: 274 SFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 + +++ + L + + ++WN+ + + + R +NI Sbjct: 122 LDDFALKRFG----FSGKTALAQYKRAAKLWNEVQCVKIIALLSETDLELRSLGTGLQNI 177 Query: 331 IFQTILYIAQTACKNNN 347 + LY + ACK+ N Sbjct: 178 VMDMCLY--EIACKSGN 192 >gi|292669986|ref|ZP_06603412.1| hypothetical protein HMPREF7545_0950 [Selenomonas noxia ATCC 43541] gi|292648398|gb|EFF66370.1| hypothetical protein HMPREF7545_0950 [Selenomonas noxia ATCC 43541] Length = 348 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 89/286 (31%), Gaps = 31/286 (10%) Query: 23 VFIFYGSDKGLIFELINQ--FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 VF+ G + E + ++ + + +L+ + + T + + F Sbjct: 18 VFLLAGEEP-YYTERAEEAILRRLLPVPEERADALIRYEEM---PPLDTLMETLETAPFF 73 Query: 81 SKKKIILIENLSTEKK----------------VLDCLEEIIIKNICNHIIIIKSNEIK-K 123 + K ++L+ + + + V D L ++ + K Sbjct: 74 TDKMVVLVRDAAVFRAGKKKEEDDDAPVSKDTVTDRLAALLADLPPTTYAVFTLGAKPDK 133 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG---- 179 L + EK VL + ++ + L +S+ A+ L + Sbjct: 134 RRKLYQTVEKHGRVLESAPLR--PWNVEGWLNGRLREMGRSMHPRARAFFLNIVSMMQTI 191 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 +L+KL+ Y ++ +E ++ + + + + +A I A+ L Sbjct: 192 SLAFLDRQLEKLALYT-DNSQFSEDDLRAAFSEMPEVSVFALTDAVSARDIRRALDLLAR 250 Query: 240 FLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEK 284 A + LL + + L + ++ + + Sbjct: 251 CRADGVHFTVLLVLLTRHVRQLWQAKRLLMNGTPPKGLGKVMGMHP 296 >gi|317482800|ref|ZP_07941810.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|322689321|ref|YP_004209055.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp. infantis 157F] gi|322691333|ref|YP_004220903.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|316915762|gb|EFV37174.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|320456189|dbj|BAJ66811.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320460657|dbj|BAJ71277.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 323 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL ++K+ + L K+ ++I +K + ++ + Sbjct: 65 DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L ++ E + + A Q L++ LGG ++L + Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|189439195|ref|YP_001954276.1| DNA polymerase III subunit delta [Bifidobacterium longum DJO10A] gi|227547367|ref|ZP_03977416.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189427630|gb|ACD97778.1| DNA polymerase III delta subunit [Bifidobacterium longum DJO10A] gi|227212182|gb|EEI80078.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 323 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNDARTKALCAQALKARPDA-ELIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL ++K+ + L K+ ++I +K + ++ + Sbjct: 65 DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L ++ E + + A Q L++ LGG ++L + Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 183 FDDNPMGLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|291456920|ref|ZP_06596310.1| DNA polymerase III, delta subunit [Bifidobacterium breve DSM 20213] gi|291382197|gb|EFE89715.1| DNA polymerase III, delta subunit [Bifidobacterium breve DSM 20213] Length = 323 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L + D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNGMRTKELCSQALQARPDA-ELIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ I NL ++K + L K+ I+I +K + ++ + Sbjct: 65 DTAVVKIINLQNADEKFAETLVSYTKQAAKDPNGSSIVICQHEGGVKGRKIIDQLTKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + L ++ E + + A Q L++ LGG ++L + Sbjct: 125 RKVDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ED I + + + + ++G+ AI++ + AL+ Sbjct: 183 FEDNPIGLDRANQYLTANPQVTGFAVADKAVEGRTAEAIVMMRAAVEQGTDPIALIGALA 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSPGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|313890756|ref|ZP_07824381.1| DNA polymerase III, delta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120857|gb|EFR43971.1| DNA polymerase III, delta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 343 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 25/272 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 V + G D G ++ + K I+ D F L LE + + + S Sbjct: 17 PVTLITGDDLGQFSQIKEEVLKIIAYDKDDLTYSYFDLSEGGYLEAEMD-------LLSL 69 Query: 78 SLFSKKKIILIE---NLSTEK------KVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ K+++ + +++T+K L E + K + +II + ++ + Sbjct: 70 PFFADTKVVIFDHFLDITTQKKNYLKENELKSFESYLEKPLATTKLIIFAPGKLDGKRRI 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ I P + L + +L GD Sbjct: 130 VKLLKRD--AEVIEALPLKEAELRQYFQSKGKEIGLVFDSGVFDKILLKSNGDFSQMAKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L +Y IT + V + I T I ++ +QG L + Sbjct: 188 LLFLKTYK-GQGNITLEDVDEAIPKTLHDNIFDLSRFILQGSSDQVTELVHDLRLAGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 L+ L +F+L +I ++ + + ++I+ Sbjct: 247 IKLIAILLGQFRLYLQIKLLMQ-DGKNEQQIV 277 >gi|220917742|ref|YP_002493046.1| DNA polymerase III delta [Anaeromyxobacter dehalogenans 2CP-1] gi|219955596|gb|ACL65980.1| DNA polymerase III delta [Anaeromyxobacter dehalogenans 2CP-1] Length = 465 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%) Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163 H+++I + +I + K + + L ++E L K Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 + + + L +G D +E+ KL++Y + +I V ++ + N Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 A + A+ + D +A LL + L + Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLAATVRRLVVERERARAA 375 >gi|116326866|ref|YP_796586.1| DNA-directed DNA polymerase, delta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329813|ref|YP_799531.1| DNA-directed DNA polymerase, delta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119610|gb|ABJ77653.1| DNA-directed DNA polymerase, delta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123502|gb|ABJ74773.1| DNA-directed DNA polymerase, delta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 362 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 16/240 (6%) Query: 37 LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL----- 91 + ++K+ I +PF +V+ + + F ++ + +FS +K+ ++++ Sbjct: 39 IAEKYKEEIR-KTGEPFEIVI--FVSEPGDFERFQSDAFNLDMFSNRKLFIVKSGLEFFK 95 Query: 92 ---STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVLAISCYPDNK 147 S + K + L++ + ++I N + N + +I K + + YP+ Sbjct: 96 PISSGKGKNNESLQKRFSNFPNSIQLLIHYNHWEVPNKILQIFGGKANLIKTKNFYPNET 155 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + ++ + ++A L + A L KL Y L T+Q V+ Sbjct: 156 R---AGLLQACKEIGVQLDEDAINEFLHKIPPSMGAYLQSLSKLKLY-LVKKSFTKQDVE 211 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 D++ + L +++ ++ F + K L ++ L K II Sbjct: 212 DVLLFSGELNSSGLVDFFMESDRIRFFKELKKFQSGKDSLLLFLSILKERVDQLRKYKII 271 >gi|306830924|ref|ZP_07464086.1| DNA-directed DNA polymerase III delta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426947|gb|EFM30057.1| DNA-directed DNA polymerase III delta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 345 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 101/306 (33%), Gaps = 29/306 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + D F + ++ + + + + S Sbjct: 18 ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + K L E + + +II + ++ L Sbjct: 71 FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L ++ + + LL D + Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L SY +D IT + I T I ++ + GKI A L Sbjct: 189 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304 L+ L +F++ ++ I+ + ++ + + + P + R + Sbjct: 248 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306 Query: 305 LVRETL 310 +++ L Sbjct: 307 FLKKAL 312 >gi|261493585|ref|ZP_05990105.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495423|ref|ZP_05991871.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308928|gb|EEY10183.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310767|gb|EEY11950.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 349 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 26/323 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D L+ E + + D V + N + S LF Sbjct: 27 PFYLLTGNDLLLVNETKDAIIHTARLNGFDEKKEVEIKNDT---NWEELFEAAQSMGLFF 83 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139 ++I+++ S L E+ + + I+ + K + + +++ Sbjct: 84 ARQIMVLNFPDSPTATQFKKLAELCAFIHSDLLFILHLPKFSKTMKKQAWFTQIELNLVQ 143 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+C L + I EA Q+L + G+ +A + LQ L D Sbjct: 144 INCQTPELSKLPQWVSHRAKAMNLQIENEANQLLCYSYEGNLLALKQALQLLQL-NATDG 202 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT ++++ + + I+A +GKI A + ++ + LL ++ Sbjct: 203 KITLTKAQEVVEHSAQFTPFQWIDALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELM 262 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW--NKNLVRETLHKI---- 313 +L +I + ++ + I R L+IW + + ++ Sbjct: 263 ILLEI-------TRNPTAVVSSEQSLFIGNLRTEFDR-LKIWQNRRPFYNQITQRLTYQK 314 Query: 314 ------DHRIHLARKKKYLEKNI 330 + K+ +I Sbjct: 315 LYALIQQLAELERKVKQEFSDDI 337 >gi|306833041|ref|ZP_07466173.1| DNA-directed DNA polymerase III delta subunit [Streptococcus bovis ATCC 700338] gi|304424940|gb|EFM28074.1| DNA-directed DNA polymerase III delta subunit [Streptococcus bovis ATCC 700338] Length = 345 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 100/306 (32%), Gaps = 29/306 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + D F + ++ + + + + S Sbjct: 18 ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + K L E + + +II + ++ L Sbjct: 71 FFADQKVVIFDNLLDITTAKRSCLDDKALKRFEVYLENPLDTTRLIIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L + + + LL D + Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFRKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L SY +D IT + I T I ++ + GKI A L Sbjct: 189 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304 L+ L +F++ ++ I+ + ++ + + + P + R + Sbjct: 248 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306 Query: 305 LVRETL 310 +++ L Sbjct: 307 FLKKAL 312 >gi|58337147|ref|YP_193732.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus NCFM] gi|227903723|ref|ZP_04021528.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC 4796] gi|58254464|gb|AAV42701.1| putative DNA polymerase III, delta subunit [Lactobacillus acidophilus NCFM] gi|227868610|gb|EEJ76031.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC 4796] Length = 329 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 124/310 (40%), Gaps = 36/310 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKK 83 + +G D L L+N + K + F ++ + + + ++ +SLFS++ Sbjct: 19 LVWGEDDFLNDYLVNSYAK------EEQFKDYEHIVVDCESDGLDELIADLTESSLFSEQ 72 Query: 84 KIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSN--EIKKNNTLRKIA 131 K+I+I+N KK L+++ ++ + +++I+++ +I + L K Sbjct: 73 KLIVIKNPFFLTAKVPKKFSKQLDDLQKIFEKIADLED-VVVIEASYEKIDRRKKLTKTI 131 Query: 132 EKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K +V I Y + + + + +I++ A QIL+ + Q Sbjct: 132 MKQFNVFEPKIRPYE-----VGAMTKAIIKAEGYTITQSALQILVERSDQVMDTVLSNYQ 186 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 KL E+ ITE+ V + + I I++A + A + L Sbjct: 187 KLKM-AAENNKITEKSVIQNVDLSLAQNIFAILDAALNKNYQEATDRLNNQLREGATPIQ 245 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 LL F + +L+ + I+ + S +I+++ + P + + + NK + + Sbjct: 246 LLAVFENQLELILVVKILAQRQR-SESQIVKELG--VHPYRVKLAMK-----NKLAINKL 297 Query: 310 LHKIDHRIHL 319 +D I L Sbjct: 298 EKLLDDAIKL 307 >gi|320333899|ref|YP_004170610.1| DNA polymerase III subunit delta [Deinococcus maricopensis DSM 21211] gi|319755188|gb|ADV66945.1| DNA polymerase III, delta subunit [Deinococcus maricopensis DSM 21211] Length = 300 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 96/303 (31%), Gaps = 17/303 (5%) Query: 30 DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89 + L E + + + D + ++ +++ + + SLF + ++ Sbjct: 8 NHFLAEERAREVLSARGVAWRD---VPRVSGDDVRTDA---LAPLLVPSLFG--EATVLV 59 Query: 90 NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 +L K D L +++ + ++ + T K+ EK A P Sbjct: 60 DLEGVKVTKD-LTDLLARADATVAVL----DPNGPATRVKLYEKHGEHHASPA-PTKPGE 113 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 + + + + ++A L D EL KL+ L+ +T V + Sbjct: 114 VAGWVAGRARALRLKLDRDAAMYLAEVFSADLAGIVAELNKLAF--LDVPTLTRDVVTRV 171 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + ++ A G+ A LAS L+ + ++ L+ + + + Sbjct: 172 VGREAPGDSFAMLGAATAGRPGEAAGQLRRLLASGEDPFKLMGAVVWQYSLVARCVALLQ 231 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329 E + L+ + R N+ +R L +I + + Sbjct: 232 EGGAVNEHTAASRLGVKPYPAKKALEVA-RRLNEGKIRAHLRRIQDADQAMKSGQDPAST 290 Query: 330 IIF 332 + Sbjct: 291 LER 293 >gi|293374087|ref|ZP_06620423.1| DNA polymerase III, delta subunit [Turicibacter sanguinis PC909] gi|325845733|ref|ZP_08169013.1| DNA polymerase III, delta subunit [Turicibacter sp. HGF1] gi|292647294|gb|EFF65268.1| DNA polymerase III, delta subunit [Turicibacter sanguinis PC909] gi|325488247|gb|EGC90676.1| DNA polymerase III, delta subunit [Turicibacter sp. HGF1] Length = 326 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 105/277 (37%), Gaps = 21/277 (7%) Query: 53 FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN-----LSTEKKVL----DCLEE 103 F ++ + E ++ + + + S +K IL++N K L + Sbjct: 30 FDVISYDMKE-ATIQEALFD-LQTVAFLSNRKAILVKNPLFLTGKDSKGELNHDLEKFMA 87 Query: 104 IIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161 + I ++I+II + ++ + + K+ +K + Y + L+ ++ L Sbjct: 88 FLEHPISDNILIIYAPYDKLDERKKVVKLLKKQSEFFTFETYSET--TLIQWAQKKLKEE 145 Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIICDTHVLYI 218 A ++L+ EL K+ Y L+D ++ + ++ I Sbjct: 146 GIEFDPRAVELLVKFTHAKLDLMYQELDKIFLYFLDDATSKYLSVDLIHLLVPRQLEDNI 205 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 + +A +Q K+ +A ++ L +L +F+L+ ++ I ++ Sbjct: 206 FLLTDALMQQKVKDAYLIYQDLLTQNEEPFKILIMIANQFRLMSQV-IQLSRQGYREAEV 264 Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + N+ P + ++ + +L++ L+++ Sbjct: 265 AKTL--NVHPYRVKLIHGQSHRFELDLIQSYLYQLAQ 299 >gi|257465444|ref|ZP_05629815.1| DNA polymerase III subunit delta [Actinobacillus minor 202] gi|257451104|gb|EEV25147.1| DNA polymerase III subunit delta [Actinobacillus minor 202] Length = 341 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 100/288 (34%), Gaps = 37/288 (12%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + N + S LF K+++++ S + L + + + ++++ + Sbjct: 58 ETNWDALFESAQSMGLFFSKQMMILNLPESLNANQVKQLTTLCQLSHSDLLLVLCLPKFT 117 Query: 123 KNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K + + ++ ++C + L + + + I EA Q+L + G+ Sbjct: 118 KAVEKQTWFTQIEAQLIQVNCQTPDVAKLPNWLAHRAKLMGLQIEPEAAQLLCYSYEGNL 177 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +A + LQ L ++ IT K+I+ + + ++A ++GKI A + ++ Sbjct: 178 LALKQALQFLQLRFID-GKITLARAKEIVEQSAQFTPFQWVDALLEGKIGRAERILNYLK 236 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---- 297 + LL ++ +L I + + + +L Sbjct: 237 NEDIQPVVLLRIIQKELFILL---------------EISRLPTPLHHYDQPLLTNQIRAE 281 Query: 298 ---LRIW--NKNLVRETLHKI----------DHRIHLARKKKYLEKNI 330 L+IW + + ++ + + K+ + I Sbjct: 282 FDRLKIWQNKRPFYVQACQRLTYRKLFTLIQQLAVLEKQIKQEFSEQI 329 >gi|288904872|ref|YP_003430094.1| DNA polymerase III subunit delta [Streptococcus gallolyticus UCN34] gi|288731598|emb|CBI13153.1| hypothetical DNA polymerase III subunit delta [Streptococcus gallolyticus UCN34] Length = 345 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 100/306 (32%), Gaps = 29/306 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + D F + ++ + + + + S Sbjct: 18 ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + K L E + + +II + ++ L Sbjct: 71 FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L ++ + + LL D + Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L SY +D IT + I T I ++ + GKI A L Sbjct: 189 AFLKSYK-KDGHITTDDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304 L+ L +F++ ++ + + ++ + + + P + R + Sbjct: 248 KLIAIMLGQFRMFLQV-SVLASQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306 Query: 305 LVRETL 310 +++ L Sbjct: 307 FLKKAL 312 >gi|294791900|ref|ZP_06757048.1| putative DNA polymerase III, delta subunit [Veillonella sp. 6_1_27] gi|294457130|gb|EFG25492.1| putative DNA polymerase III, delta subunit [Veillonella sp. 6_1_27] Length = 330 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 109/321 (33%), Gaps = 42/321 (13%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 11 LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EVGPQKISEKLCEDSLFGDQK 62 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK-IAEKFTS 136 + +I L E+++K ++ I++ +++ K K I EK + Sbjct: 63 VFCLVNLPIIRKSGKNSDAWVPLYELLLKYNGDNPIVLIYHDMIDKRIKQNKEILEKIPN 122 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192 C L+ I + ++ +A++ + L + S R E + Sbjct: 123 H---QCKRLEGEDLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYF 179 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250 + +IT++ +++ D I A ++ I + L F K + + Sbjct: 180 LQITGERVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 239 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWN 302 + G L+ L+ + +S + I + I + + S RI + Sbjct: 240 IEGQLR----LQLLVSECRQVGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-S 290 Query: 303 KNLVRETLHKIDHRIHLARKK 323 +R L + I +R Sbjct: 291 IKALRALLKGLYEIILDSRSS 311 >gi|238060580|ref|ZP_04605289.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149] gi|237882391|gb|EEP71219.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149] Length = 326 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 8/240 (3%) Query: 73 EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 E+ S SLF ++++++ K ++ L +++ K Sbjct: 58 EMLSPSLFGGRRVLVLRAGQDARKDLVAALLAYAKNPDPEVHLVVLHLGAAKGKAFADGL 117 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + + + + + + + + +A + L+A +G D +L Sbjct: 118 RAAGATVVPAAKLKGHRERVAFVRDEVRRVGGKCTDDAAEALIAAVGTDLRELAAACSQL 177 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 D I V + + +AT+ G + A+ + L + + Sbjct: 178 V--ADTDGRIDADTVARYYKGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVPIA 235 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + + ++ ++ Q + R W + + Sbjct: 236 DALA---DGVRTVARVAAAGRGDPYQLASTLGMPA-WKIKSAQQRA-RGWTPEGLVRAMR 290 >gi|269798020|ref|YP_003311920.1| DNA polymerase III delta [Veillonella parvula DSM 2008] gi|269094649|gb|ACZ24640.1| DNA polymerase III delta [Veillonella parvula DSM 2008] Length = 325 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 38/319 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 6 LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +I L E+I++ ++ I++ + + + +++ E + Sbjct: 58 VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGDNPIVLIYHNM-IDKRIKQNKELLNKIS 116 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194 C L+ I + ++ +A++ + L D S + E + Sbjct: 117 NRECKRLEGADLVMWIRQYCTFNGFKMTPDAQEYVAHLIDLWQDVPVSFMKTEFDRYFLQ 176 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252 D +IT++ +++ D I A ++ I + L F K + + + Sbjct: 177 ITGDKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSYIE 236 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304 G L+ L+ + + +S + I + I + + S RI + Sbjct: 237 GQLR----LQLLVSECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-SVK 287 Query: 305 LVRETLHKIDHRIHLARKK 323 +R L + I +R Sbjct: 288 ALRALLKGLYEIILDSRSS 306 >gi|46191298|ref|ZP_00120473.2| COG1466: DNA polymerase III, delta subunit [Bifidobacterium longum DJO10A] Length = 312 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 98/303 (32%), Gaps = 19/303 (6%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87 G D L D L+ L+A + ++E S SL S ++ Sbjct: 4 GGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLSDVAVVK 59 Query: 88 IENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAIS 141 + NL ++K+ + L K+ ++I +K + ++ + + Sbjct: 60 LVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVP 119 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L ++ E + + A Q L++ LGG ++L + +D + Sbjct: 120 DLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPM 177 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V + + + + ++GK AI++ + AL+ Sbjct: 178 GLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------ 231 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 K+ I + S + I Q K + +N + L W + + + ++ Sbjct: 232 MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSK 290 Query: 322 KKK 324 Sbjct: 291 TNG 293 >gi|291516781|emb|CBK70397.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp. longum F8] Length = 323 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL ++K+ + L K+ ++I +K + ++ + Sbjct: 65 DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L + E + + A Q L++ LGG ++L + Sbjct: 125 RKEDVPDLKKPDAQLNFVFGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|240949287|ref|ZP_04753630.1| DNA polymerase III subunit delta [Actinobacillus minor NM305] gi|240296238|gb|EER46887.1| DNA polymerase III subunit delta [Actinobacillus minor NM305] Length = 341 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 101/288 (35%), Gaps = 37/288 (12%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + N T + S LF K+++L+ S + L + + + +++ + Sbjct: 58 ETNWDTLFEAAQSMGLFFSKQMMLLNLPESLNANQVKQLATLCRLSHSDLLLVFCLPKFT 117 Query: 123 KNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K ++ + T ++ ++C + L + + + I EA Q+L + G+ Sbjct: 118 KAVEKQEWFTQIETQLIQVNCQTPDVAKLPNWLAHRAKLMGLQIEPEAAQLLCYSYEGNL 177 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 +A + LQ L D IT K+I+ + + ++A ++GKI A + ++ Sbjct: 178 LALKQALQFLQLR-FTDGKITLTRAKEIVEQSAQFTPFQWVDALLEGKIGRAERILNYLK 236 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---- 297 + LL ++ +L I + + + +L Sbjct: 237 NEDVQPVVLLRIIQKELFILL---------------EISRLPTPLYHYDQPLLTNQIRAE 281 Query: 298 ---LRIW--NKNLVRETLHKI----------DHRIHLARKKKYLEKNI 330 L+IW + + ++ + + K+ + I Sbjct: 282 FDRLKIWQNKRPFYVQACQRLTYQKLFILIQQLAVLEKQLKQEFSEQI 329 >gi|319440881|ref|ZP_07990037.1| DNA polymerase III, delta subunit [Corynebacterium variabile DSM 44702] Length = 317 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 20/242 (8%) Query: 23 VFIFYGSDKGLIFELINQF---KKNISITYHDP---FSLVVLNALEIQKNISTFWNEINS 76 +++ G D L + + P + ++A E+ E+ S Sbjct: 1 MYLIVGGDDFLAERRRTAIVEEARRSAGNPDLPVEMRKVSEIDAGELA--------ELLS 52 Query: 77 TSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF++ +++ + L+ K +E + ++I++ + + L K Sbjct: 53 PSLFAEDRVVAVTGLAEASKDTAGLIEAAVADPAPGVVLILQHSGKGRQKALVTSLPKKA 112 Query: 136 SVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A+ I+ +S + + LL +G D + + +L Sbjct: 113 PTGALQVLSAEELKGRERAGFIDAEFRDAGVRVSPDVTEALLDAVGTDLRELASAVSQLV 172 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 S +T V + + ++ + G+ A+ A L +P L Sbjct: 173 SDTGGK--VTAAAVHRYYQGSAEVSGFDVAEYAVSGRTDQAVGAARRALQLGVPHVLLAS 230 Query: 253 GF 254 Sbjct: 231 AL 232 >gi|206890034|ref|YP_002249029.1| DNA polymerase III, delta subunit superfamily [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741972|gb|ACI21029.1| DNA polymerase III, delta subunit superfamily [Thermodesulfovibrio yellowstonii DSM 11347] Length = 283 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 42/252 (16%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 L ++ Y D L+FE+ +KN DP + + E + +I++F S S Sbjct: 15 LPKRMYFCYAQDTFLLFEVTRLVRKNF-----DPVVIETYESPE-ELDITSFA----SPS 64 Query: 79 LFSKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIII-----------KSNEIKKN 124 LFS K ++LI N KK ++ L++I + + +I+ + +KK+ Sbjct: 65 LFSSKTVLLIYNFEKIKKTEKRIEWLKKITSQVHSSISLILLCNASYKEISDEIAYLKKD 124 Query: 125 --NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + L + K K L I ++ ++A L+ GG Sbjct: 125 KNSLLYNLDLK-------------KEDLPTWIAYKASQNGITLKQDAIYYLIDITGGQPG 171 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +E++K+S + I +KDI+ + ++I+A + A L D Sbjct: 172 LISSEIEKISLLT-DKSHIGLFDIKDILTELGEFTAFDLIDAIKKKDKERAYRLIDKL-- 228 Query: 243 SKMPSHALLHGF 254 +L Sbjct: 229 QNTEPDMILGAL 240 >gi|330863390|emb|CBX73512.1| hypothetical protein YEW_KX46530 [Yersinia enterocolitica W22703] Length = 160 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 7/142 (4%) Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++LS D +T V+ + D ++A + GK A + Sbjct: 2 ERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPV 60 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 LL ++ L + E + + + + + +R ++ ++L+ + +++ Sbjct: 61 ILLRTLQRELLQLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQ 116 Query: 309 TLHKIDHRIHLARKKKYLEKNI 330 + + R K+ ++I Sbjct: 117 AVRLLSQI--EVRLKQDYGQSI 136 >gi|325963355|ref|YP_004241261.1| DNA polymerase III subunit delta [Arthrobacter phenanthrenivorans Sphe3] gi|323469442|gb|ADX73127.1| DNA polymerase III, delta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 338 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 96/304 (31%), Gaps = 21/304 (6%) Query: 23 VFIFYGSDKGL---IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 V + G ++ L + I + + L +A + T ++ S SL Sbjct: 27 VVLVTGPEEYLGIRAMDRIRAQVRAAAPDV----ELSRFSAAAYEA--GTLLMQV-SPSL 79 Query: 80 FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSV 137 F + K+I +E + + L + + +++++ + ++ L + + V Sbjct: 80 FGESKLIEVEAVEAMNDAFLADALGYLGHPEQDAVLVLRHAGGVRGKKLLDAVKKGGWPV 139 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + + ++ G + I ++A Q L+ +G + +L Sbjct: 140 VDCQPLKKDADKVAFVM-AEFKAGGRRIEQDAVQALVNAVGANLSELAAACSQLI--ADA 196 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +T + V ++ +A + G A+ LA+ L+ Sbjct: 197 GTTVTAEIVDRYYGGRIEATAFKVADAAMAGNAPLALSTLRHALATGADPVPLVAALAA- 255 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 K+ + + S E + P Q +R W + ++ Sbjct: 256 -----KLRTVARVAGASGSSAHIAAELGMQPWLVEQAQRDVRRWTPEGLVRSIQATAEAD 310 Query: 318 HLAR 321 + Sbjct: 311 AQVK 314 >gi|205374274|ref|ZP_03227073.1| DNA polymerase III subunit delta [Bacillus coahuilensis m4-4] Length = 220 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 3/194 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + L + + I SI + A +LL G + NE+ KL+ Y + IT + Sbjct: 30 TEQELKKWVAYEVKILGVSIEEAALDLLLTLTGTNLQVVANEVNKLALYGGHQVSITTEM 89 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V ++ + I +++ I I A+ + L +L +F+L+ ++ Sbjct: 90 VDKLVARSIEQNIFILVDKVISRDIGGAVQIYYDLLKQNEEPIKILAILAGQFRLIYQVK 149 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + I + + + + R + +++ + + + + K Sbjct: 150 -QLTSKGYGQQSIGSTLK--VHSYRVKLAAGQARAFTFEQLQKIMLLLAEGDYEMKTGKR 206 Query: 326 LEKNIIFQTILYIA 339 +K I+ IL +A Sbjct: 207 DKKLIVEMFILKLA 220 >gi|322387554|ref|ZP_08061163.1| DNA-directed DNA polymerase III delta subunit [Streptococcus infantis ATCC 700779] gi|321141421|gb|EFX36917.1| DNA-directed DNA polymerase III delta subunit [Streptococcus infantis ATCC 700779] Length = 345 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 106/272 (38%), Gaps = 23/272 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + Q K I D + + E+ + ++ E+ S F+ +K Sbjct: 20 LFTGADQGQYDIMKTQVLKQIGYDPAD-LNFAYFDMKEV--DYNSLELELVSLPFFADEK 76 Query: 85 IILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I++++ +++T KK L E+ + + + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFIDITTAKKRYLTDDELKAFEDYLENPVPSSKLVIFAEGKLDSKRRLVKLLKRD 136 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L ++ + + + LL +E+QK + Sbjct: 137 --ATVFEALEPKEQELRAYFQKWTQEQGLTFGGNSFEQLLIKSS----FQFSEIQKNLLF 190 Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 L + LITE+ + + I T I ++ + KI A L L+ Sbjct: 191 LLSYKDSGLITEEDIVEAIPKTLQDNIFDLTQLILTKKIDQARDLVKDLTLQGEDEIKLI 250 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L +F+L ++ I++E S + +++ Sbjct: 251 AIMLGQFRLYTQVKILQE-SGQTESQMVSSLG 281 >gi|33241256|ref|NP_876198.1| DNA polymerase III subunit delta [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238786|gb|AAQ00851.1| DNA polymerase III delta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 338 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 110/334 (32%), Gaps = 42/334 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D G I I +F K +L L+ + E+ + + Sbjct: 2 PIHLIWGDDFGAIDRSIEKFIKKAIDPNWISINLSRLDGQNASEAHKCL-EEVRTPPFGN 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKS----NEIKKNNTLRKIAE 132 +I++++ + L H+I++ +K L + Sbjct: 61 GHRIVIVKKSPFCNGCSNELSNHFESIINLIPEQTHLILVNQNKPDGRLKTTKLLNNLI- 119 Query: 133 KFTSVL----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD--RIAS-- 184 K + D L+E + ++++A L+ LG D RIA Sbjct: 120 KSKKAFEQRFILPPAWDGLGQ-KKLVERTAEEMNIELTEDAILTLVEALGSDSQRIAIEL 178 Query: 185 ------------RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + E +K+ I+++ V D+I ++ I ++ Sbjct: 179 EKLVLLEEAKTNQKEGEKII--------ISQESVNDLIHSISSNSLQ-ICEFLLKSNFGK 229 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 AI D+ L P+ +L + + + ++ + N I ++ P + Sbjct: 230 AIEKIDYLLNEGEPALRILATMTSQIRGWLWVSLLDQGENKEVSSIAKQAGIA-NPKRIY 288 Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 ++++ ++ + E L +I L +K Sbjct: 289 VIRKQIQGKSPMFFIELLSRILEIEALLKKGALP 322 >gi|320528381|ref|ZP_08029543.1| DNA polymerase III, delta subunit [Solobacterium moorei F0204] gi|320131295|gb|EFW23863.1| DNA polymerase III, delta subunit [Solobacterium moorei F0204] Length = 334 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 88/277 (31%), Gaps = 39/277 (14%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN---STSL 79 V++ G D E + K SI V F + + SL Sbjct: 3 VYLLSGKDMFRQEERLATLLKEFSIEKE-----YVTTFDASNAKTFRFDEALMACDTFSL 57 Query: 80 FSK--KKIILIENLSTEKKV------------------LDCLEEIIIKNICNHIIII--- 116 F KK ++I+ + V L LE + N +++ Sbjct: 58 FDDSAKKAVIIKEPHFLRAVAKTSKKETEKQETEKEQRLKSLEAYLKNPNPNTLLVFYCH 117 Query: 117 --KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 ++ KK L + V I ++ L + ++++AK LL Sbjct: 118 TFSADTRKKEYKLLTNYD----VRVIKFELMKPWEFEKYVDNQLKENKYKLTRDAKTELL 173 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 + D + N L K+ Y + + + I+ L I + NA + + + + Sbjct: 174 ERVSNDTLKFHNALVKIDLY--GKKELNLEDIMHIVPVNADLNIFRMSNAFVAHDLSSTL 231 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + D L ++ ++ K + L I + E Sbjct: 232 LAIDEMLQARYDYVVMIAMLASKLRSLYNIKKLYERG 268 >gi|242310274|ref|ZP_04809429.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT 98-5489] gi|239523571|gb|EEQ63437.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT 98-5489] Length = 353 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 34/333 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISIT--YHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + YG D LI ++ + I + F + + SL Sbjct: 36 RAILLYGEDSFLIGYYGDKIAQKILAKGCEKNSFYFGEFDFEAALSC-------FSQGSL 88 Query: 80 FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---------TLRK 129 F + ++ I+ + KK LD L E I KN +I++ + + + L Sbjct: 89 FGDEALVWIKVDKKIPKKQLDSLIEAIEKNQSG-YLILEFYQAENKSVSEYGLDCKALAG 147 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + ++ + + N+ M ++ E IS A + +L D S EL+ Sbjct: 148 SF-RGKNIYEVRFFFANQGEAMAILREYANALCIKISDYALKKILEQQNYDLGLSVAELR 206 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 K Y + D I + ++ + + +E + D FL Sbjct: 207 K---YSIFDEEINVESIESL--GYGLGSVEYEEILELLLDKKPFFKELDRFLEQGFEEVQ 261 Query: 250 LLHGFLQKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L+ + F L I+ N S E+I+ II K+ +++I + ++ Sbjct: 262 LIAEVQRYFFQLFLFSSHIRIYGNASSEEILGYKLPPIILEKKRK--RAIQINTQERFQK 319 Query: 309 TLHKID----HRIH-LARKKKYLEKNIIFQTIL 336 + ++ I + + I Q IL Sbjct: 320 IFYVLNKWREEAIKGNTKGNGFFSALIKIQAIL 352 >gi|224418789|ref|ZP_03656795.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] gi|253826688|ref|ZP_04869573.1| DNA polymerase III holoenzyme delta subunit [Helicobacter canadensis MIT 98-5491] gi|313142306|ref|ZP_07804499.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] gi|253510094|gb|EES88753.1| DNA polymerase III holoenzyme delta subunit [Helicobacter canadensis MIT 98-5491] gi|313131337|gb|EFR48954.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT 98-5491] Length = 333 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 53/337 (15%), Positives = 111/337 (32%), Gaps = 59/337 (17%) Query: 22 FVFIFYGSDKGLI----FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + YG D L+ ++ + K FS + I+ F Sbjct: 17 RAILLYGEDSFLVGYYGEKIAQEILKKDCEKNSFYFS-----EFDFNSAIACFSQG---- 67 Query: 78 SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 SLF + ++ I+ + KK LD L + KN + +I++ + + + AE Sbjct: 68 SLFGGESLVWIKADKKIPKKQLDSLIAALEKN-GSGYLILEFYQAENKSA----AEYSLD 122 Query: 137 VLAIS------------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 A++ + N ++ E IS + + +L D S Sbjct: 123 CKALAGSFKGKNIYEARFFSLNAGESFGILREYANGFGLKISDFSLRKILEQQNYDLGLS 182 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 EL+K Y + D I ++++++ + EEI+ + L + FL Sbjct: 183 VAELRK---YTIFDSEINAENIENLGYSLGSIEYEEILELMF--DRKPYLNLLEKFLEQG 237 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-------LQES 297 L+ + F L + + + + + + +++ ++ Sbjct: 238 FEEIPLIAEIQKYFFQLFLFSSHIKLYGNATSEEVLGYKLPVNLLEKKKRRAIQIGQEKF 297 Query: 298 LR------IWNKNLVR---------ETLHKIDHRIHL 319 L+ W+++ +R L KI I Sbjct: 298 LKIFCVLNRWHEDSIRGITKGNGFLRALIKIQ-AILE 333 >gi|300933234|ref|ZP_07148490.1| DNA polymerase III, delta subunit [Corynebacterium resistens DSM 45100] Length = 329 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 107/336 (31%), Gaps = 17/336 (5%) Query: 16 NLFLSHFVFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 V + G D+ L I + S P + + L + + Sbjct: 6 KPQPPAPVNLIVGEDEFLAERRRKEIALHARRASGNADLPVEMHRASELSEPELLELLSP 65 Query: 73 EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 + F++ +II I + K V++ +E I + ++I+ +N L + Sbjct: 66 SL-----FAEDRIIYISEVEDKGKDVVELIEGAIRQPAPGIVLIVWHKGKGRNKKLVQSW 120 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K +V+ + P ++ I+ +S + L +G D + + +L Sbjct: 121 PKLGAVVHEAA-PLKGRAILSFIDSEFRNHGVRVSGDVTNALHDAVGSDLRELASAVSQL 179 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 D +T V + ++ + + G + NA+ +A + AL Sbjct: 180 V--ADTDGQVTADTVHTYYVGRAEVSGFDVADLAVTGYVTNAVAMARRAMQVGTKPIALA 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + I + I + + + ++ + R W + E + Sbjct: 238 TAL---GMGVTGIAKVAGAGRIDARRDSRAFGMS-PWQLEKTMRNA-RNWTPATIAEAVQ 292 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + E+ + + + IA+ A K Sbjct: 293 VVADLDGATKGSALDEEYAVEEAVRRIAELAAKGAR 328 >gi|256752146|ref|ZP_05493012.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256748960|gb|EEU61998.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 310 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 102/288 (35%), Gaps = 22/288 (7%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94 + I +FK I + +V+ + ++ + + FS+ K+++++N + Sbjct: 2 SDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFFSEYKLVVVKNEEDQ 61 Query: 95 ---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTSVLAISC 142 KK+++ +EE ++II +++K K EK ++ Sbjct: 62 LSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFYKFIEKTGKIVYFQK 119 Query: 143 YP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + ++ + E + ++G D A NE+ K+ Y + I Sbjct: 120 LSFEEAVNYTGYFFKKSGKKISKSDAE---YFVKSVGTDLYAIVNEIHKVVCYS-DSEEI 175 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + +K+++ I +++A K A + L +L +++ +L+ Sbjct: 176 KMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVPLIILSMIVRQMRLI 235 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 KI E + + I ++ L + + K + Sbjct: 236 AKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLERA 280 >gi|313678461|ref|YP_004056201.1| DNA polymerase III subunit delta [Mycoplasma bovis PG45] gi|312950149|gb|ADR24744.1| DNA polymerase III, delta subunit [Mycoplasma bovis PG45] Length = 320 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 124/331 (37%), Gaps = 33/331 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + YG +K LI + + + +K + + F + Q +I+ + +S +LF+ Sbjct: 1 MIFIYGPEKFLIEQEVQRIRKEHNDKVLEIFRF------DDQASINDLISSASSNNLFTG 54 Query: 83 KKIILIENLS--------TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-----NTLRK 129 K+ LI L + K D L I N + + I N I K+ + + Sbjct: 55 SKLFLIYALPFFDKSILKDDLKNADDLINAINVNNQDIFVFINENIISKDKISVNSWTKF 114 Query: 130 IAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 I E + I ++ L L + + I EA ++L+ + D + E+ Sbjct: 115 IFENNNHEVTMIEAKEISESKLFSLAKSLANKHKLHIDDEAIKLLINKVNNDTLMLSAEI 174 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KLS+ + I+ + +++ + NA + + Sbjct: 175 IKLSNL---EKHISAEVIENSTDTMLGDDVFAFSNALETNDLGIIWSKYKEKMLEGTEIS 231 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 AL+ Q F + +I+ K C +S +++ + + + + + L N +++ Sbjct: 232 ALIGQISQIFIIAHQIYAYKVCH-LSIDQLSRDLK--LNSYRIKKISYFLSKIGINKIKK 288 Query: 309 ---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336 +L K+D I K + + I F+ L Sbjct: 289 MILSLSKLDKDI----KNGLISEKIGFERFL 315 >gi|213691903|ref|YP_002322489.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523364|gb|ACJ52111.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458003|dbj|BAJ68624.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 323 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNDARTKALCAQALKARPDA-DLIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL + K+ + L K+ ++I +K + ++ + Sbjct: 65 DVAVVKLVNLQNADDKLAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L ++ E + A Q L++ LGG ++L + Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRAEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|78188207|ref|YP_378545.1| DNA polymerase III, delta subunit [Chlorobium chlorochromatii CaD3] gi|78170406|gb|ABB27502.1| DNA polymerase III, delta subunit [Chlorobium chlorochromatii CaD3] Length = 346 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 40/323 (12%), Positives = 102/323 (31%), Gaps = 32/323 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL---NALEIQKNISTFWNEINSTS 78 ++ F GS+ L E + + + D + L + + +++ + + Sbjct: 15 PIYFFTGSESYLKEEFATLIQGALFASEEDAVANTHLLHGHDMTLRE----LLSRASEYP 70 Query: 79 LFSKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 +F++++++++ + +K+ + ++++ ++E+ K++ Sbjct: 71 MFTERQLLVVRHFEKIKKPTTKEQQKQQYAAFGNYLANPATFTVLLLDADELDKSD---- 126 Query: 130 IAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 EK L S D H E +A + A + E Sbjct: 127 -FEKQPFSLLKSVRHDFPAIKHPDLFASERAAQAGWEFEPDALKAFAAYIDPSSREICQE 185 Query: 188 LQKLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L K+ Y E IT V D + + + E+ A + + ++ + + Sbjct: 186 LDKIILYASERQSAKRITAADVLDCVGVSRTYNVFELEKALVARNLRLCSGMSLMIMDQE 245 Query: 245 MPS---HALLHGFLQKFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNIL--QESL 298 A++ + L KI + + S + + ++ L Sbjct: 246 GQKEGLMAIVRYLTTFYMRLWKISMPEVQRMAQSDIAKVLGMSPRQEFLIKSYLTYTRQF 305 Query: 299 RIWNKNLVRETLHKIDHRIHLAR 321 + L +D + R Sbjct: 306 SLQQTEAALCALRDVDASLKGLR 328 >gi|313674444|ref|YP_004052440.1| DNA polymerase iii, delta subunit [Marivirga tractuosa DSM 4126] gi|312941142|gb|ADR20332.1| DNA polymerase III, delta subunit [Marivirga tractuosa DSM 4126] Length = 340 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 103/279 (36%), Gaps = 17/279 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ +G + I + + +KN F+ +L +++ + + S + Sbjct: 19 PVYFLHGEEPYFIDLISDFIEKNALDESEKGFNQQLLYGKDVRLD--QVVSASRSFPMMG 76 Query: 82 KKKIILIENLSTEKKVLDC------LEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133 ++++I+++ + E + + +++ K ++ K + K E Sbjct: 77 QRQVIIVKEAQNLGEFTQSDFDFSMFENYLKSPQPSTVLVFCYKHKKLDKRKKIVKTLE- 135 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + + + + D I+ + SI+++A +L +G + NE+ K+ Sbjct: 136 -QFSVLLESNKIYENKVPDWIQNYVKSKGHSINRQALLLLTEYIGNNLERLSNEIDKVLV 194 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + + I E +++ + I E+ +A I+G A + ++F + A+++ Sbjct: 195 NFSDPVEINEGLIQEYVGINKDFNIFELQSAIIKGDALRANRIINYFASDPKNHPAVVNI 254 Query: 254 FLQK--FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 F + IH + S + N K Sbjct: 255 AFLHAFFAKVLLIHHSPD---KSERGVASAAGVNPFFAK 290 >gi|304438298|ref|ZP_07398239.1| DNA-directed DNA polymerase III delta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368664|gb|EFM22348.1| DNA-directed DNA polymerase III delta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 347 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 27/291 (9%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 +H+F+ + +++ G + I + + + ++ E+ Sbjct: 3 AHEFMASLAQGTPPQ--IYLLAGEEPYYIRRAEEAILRRLLPDAA-ERADALIRYEEMPA 59 Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH------------- 112 I + + F+ K ++L+ + + + E Sbjct: 60 -IDALAESLETAPFFTDKIVVLVHDAAVFRAGKKAAEGDTPAPKDAAAERLLALLTNLLP 118 Query: 113 --IIIIKSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 ++ N K L + +K + + ++ + E L +S+ +EA Sbjct: 119 TTYVVFTLNAKPDKRRKLYQTVQKAGRI--LESEAVRPWNVEGWLNERLREMGRSMQREA 176 Query: 170 KQILLANLGGDRIASR----NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 + L +G + S +L+KL+ Y ++ TE ++ + + + +++A Sbjct: 177 RTFFLNVVGMMQTISLEFLDRQLEKLTLYT-DNKQFTEADLRAAFSEMPEVSVFALMDAI 235 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 + A+ L A + LL + + L + + Sbjct: 236 SARDVRRAMDLLARCRADGVHFTVLLALLTRHVRHLWQARRLLASGTPPKG 286 >gi|296454272|ref|YP_003661415.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp. longum JDM301] gi|296183703|gb|ADH00585.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp. longum JDM301] Length = 323 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 19/303 (6%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87 G D L D L+ L+A + ++E S SL S ++ Sbjct: 15 GGDSYLNDARTKALCAQALKARPDA-DLIELDATSADQYA---FDEAVSPSLLSDVAVVK 70 Query: 88 IENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAIS 141 + NL + K+ + L K+ ++I +K + ++ + + Sbjct: 71 LVNLQNADDKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVP 130 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 L ++ E + + A Q L++ LGG ++L + +D + Sbjct: 131 DLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPM 188 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V + + + + ++GK AI++ + AL+ Sbjct: 189 GLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------ 242 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 K+ I + S + I Q K + +N + L W + + + ++ Sbjct: 243 MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSK 301 Query: 322 KKK 324 Sbjct: 302 TNG 304 >gi|296119908|ref|ZP_06838462.1| DNA polymerase III, delta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295967062|gb|EFG80333.1| DNA polymerase III, delta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 324 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 95/297 (31%), Gaps = 23/297 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D+ L +K ++ D L VL A E+ + E S SLF Sbjct: 7 PVHLILGDDEFLAERARKSIQKAVAEETGDQPELKVLRAAEVTEWE---ILEATSPSLFG 63 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEKFTS 136 + ++I+I + ++ + + +++ +K ++ K Sbjct: 64 ETRVIVISDTERVGSALIKLIVDAAKDPAPGMTMVVNFAISRKNLKNRKKPPELVAKIQK 123 Query: 137 VL----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + + Y + + + + LL+ +G D + + +L Sbjct: 124 LAQVHEVFALYDNE---VKPWATREFASHGIRPTPDVVDALLSGVGSDLRSLAAAISQLV 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + D +T Q V+ + +I +A + G++ A+ L + Sbjct: 181 ADTGGD--VTRQTVQRYYAGVAEVENWDIADAAVAGRVGEAVATCRRALQLGAEPVGIAA 238 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 K ++ +++ + ++ + I R W+ + + Sbjct: 239 ALANKVGVIARLYTARGDKFSLAKQ--SGLHPYVAEKTAPIA----RRWSGENISKA 289 >gi|312132630|ref|YP_003999969.1| hola [Bifidobacterium longum subsp. longum BBMN68] gi|311773579|gb|ADQ03067.1| HolA [Bifidobacterium longum subsp. longum BBMN68] Length = 323 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 19/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L D L+ L+A + ++E S SL S Sbjct: 9 PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64 Query: 82 KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135 ++ + NL ++K+ + L K+ ++I +K + ++ + Sbjct: 65 DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L + E + + A Q L++ LGG ++L + Sbjct: 125 RKEDVPDLKKPDAQLNFVFGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +D + V + + + + ++GK AI++ + AL+ Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALD 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K+ I + S + I Q K + +N + L W + + + Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295 Query: 316 RIHLARKKK 324 ++ Sbjct: 296 ADEQSKTNG 304 >gi|295425150|ref|ZP_06817855.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus amylolyticus DSM 11664] gi|295065209|gb|EFG56112.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus amylolyticus DSM 11664] Length = 328 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 128/319 (40%), Gaps = 34/319 (10%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN ++ + +G D L L + K + F+ + ++ + + + Sbjct: 8 KNTNNNNPHTLIWGDDDFLNDYLARSYVK------DERFASLDHVIVDCENDGLDELIAA 61 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEII-----IKNICNHIIIIKSNE-IK 122 + +SLFS +KII ++ KK L+++ +K + + ++I+ S E I Sbjct: 62 LTESSLFSNQKIITVKQPFFLTTKVAKKYQKQLKQLQDIFSHLKELEDVVVIVASYEKID 121 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K +V+ + Y + + + + +IS+ A QIL+ Sbjct: 122 RRKKLTKTIMGSFNVVEPLVRPYE-----VAAIAKALIKAEGYTISQSALQILVERSDQV 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + +KL C++ ITE+ VK + + I I+ A + AI+ + Sbjct: 177 MDTILSNYEKLKMACVDKK-ITEEAVKTNVDLSLAQNIFAILEAALNHNYQEAIIRLNDQ 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L + LL F + +LL + I+ S +I+++ + P + + +LR Sbjct: 236 LREGTNAIQLLAVFENQIELLLVVKILA-KRGRSEPQIVKELG--VHPYRVKL---ALR- 288 Query: 301 WNKNLVRETLHKIDHRIHL 319 ++ + + + + I L Sbjct: 289 -SRIQINKLENLLAEAIKL 306 >gi|312863639|ref|ZP_07723877.1| DNA polymerase III, delta subunit [Streptococcus vestibularis F0396] gi|311101175|gb|EFQ59380.1| DNA polymerase III, delta subunit [Streptococcus vestibularis F0396] Length = 344 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 117/336 (34%), Gaps = 31/336 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + +F K I D F + + + + + + S Sbjct: 18 ITVLVGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ ++ + + K L LE + + +++ + ++ L Sbjct: 71 FFADEKVVIFDHFADMTTAKKSYLDDKALKRLENYLQSPVETTRLVLMASGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ L + P L ++ K + LL D + L Sbjct: 131 KLLKRD--ALVLEANPLKDAELRTYFQKQAHQEGLIFEKGVFEELLIKSSFDFSDVQKNL 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L Y + I+ Q + + + + I ++ ++G+I L Sbjct: 189 AFLKGYK-TEGNISSQDIAEAVPKSLQDNIFDMTQLLLRGQIQGVRELVHDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304 L+ L +F+ ++ ++ S ++I+ + + P + R + Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLGRKVNPFQVRYAIRDSRHLSVA 306 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQ-TILYIA 339 ++ T+ + + K L+K+ +F +L IA Sbjct: 307 FLKTTIKILVETDYQI-KTGTLDKDYLFDLALLKIA 341 >gi|320096029|ref|ZP_08027637.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319977039|gb|EFW08774.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 325 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 39/318 (12%), Positives = 99/318 (31%), Gaps = 19/318 (5%) Query: 6 SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65 + + + S V + G++ LI +++ + D + + + Sbjct: 2 AQRPRRTSAPTEISLAPVVLIKGTEGLLIDRALDRLRALAHQAAPD---VERTDLVAATY 58 Query: 66 NISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKK 123 + I S SLF + ++++I +L T + L + + ++ + Sbjct: 59 RPGQL-DLIASPSLFGESRMVIIRDLETMSDALAADLVAYAASPAPDVWMFLVHPGGGAR 117 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + + + + + N + L++ + + + A + L+ LG D A Sbjct: 118 GKKVVEAVARAKWPVIPAEPLKNDRDKLALVQADVRAAGRQMDPAAMRALVDALGSDPRA 177 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 L +L +T + V ++ +A + G+ A+ L + Sbjct: 178 MAGALAQLL--SDVPGRVTVEDVHRYQAGRVEASGYDVADAAVAGEAAKALTLTRHAFVT 235 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + L+ KF + + + P + + + LR W+ Sbjct: 236 GVAPQLLVAALAMKF----RAMAKASIGGNAAALKMA-------PWQIDRARRDLRGWSD 284 Query: 304 NLVRETLHKIDHRIHLAR 321 + I + Sbjct: 285 RSLAGAFEAIATADEETK 302 >gi|312278112|gb|ADQ62769.1| DNA polymerase III delta subunit [Streptococcus thermophilus ND03] Length = 344 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + +F K I D F + + + + + + S Sbjct: 17 KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +K+++ ++ + ++K L LE + + +++ + ++ L Sbjct: 70 PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ VL + D + L ++ + K + LL D + Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L Y + I+ Q + + I + I ++ ++G+I + L Sbjct: 188 LAFLKGYK-TEGNISSQDIMEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F+ ++ ++ S ++I+ + + P + R + Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ T+ + + + + ++ +L IA + Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344 >gi|254361088|ref|ZP_04977233.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica PHL213] gi|153092574|gb|EDN73629.1| DNA-directed DNA polymerase III delta subunit [Mannheimia haemolytica PHL213] Length = 349 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 26/323 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G+D L+ E + + D V + N + S LF Sbjct: 27 PFYLLTGNDLLLVNETKDAIIHTARLNGFDEKKEVEIKNDT---NWEELFEAAQSMGLFF 83 Query: 82 KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139 ++I+++ S L E+ + + I+ + K + + +++ Sbjct: 84 ARQIMVLNFPDSPTATQFKKLAELCAFIHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQ 143 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 I+C L + I EA Q+L + G+ +A + LQ L D Sbjct: 144 INCQTPELSKLPQWVSHRAKAMNLQIENEANQLLCYSYEGNLLALKQALQLLQL-NATDG 202 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT ++++ + + I+A +GKI A + ++ + LL ++ Sbjct: 203 KITLTKAQEVVEHSAQFTPFQWIDALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELM 262 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW--NKNLVRETLHKI---- 313 +L +I + ++ + I R L+IW + + ++ Sbjct: 263 ILLEI-------TRNPTAVVSSEQSLFIGNLRTEFDR-LKIWQNRRPFYNQITQRLTYQK 314 Query: 314 ------DHRIHLARKKKYLEKNI 330 + K+ +I Sbjct: 315 LYALIQQLAELERKVKQEFSDDI 337 >gi|119716120|ref|YP_923085.1| DNA polymerase III, delta subunit [Nocardioides sp. JS614] gi|119536781|gb|ABL81398.1| DNA polymerase III, delta subunit [Nocardioides sp. JS614] Length = 330 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 18/248 (7%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + + V + G ++ L E + + L A ++ E Sbjct: 7 PRAADVLGRVTLVTGKEEFL-NERTVSAVRAAVRNHDAEAELSETVAGDLS---LATLGE 62 Query: 74 INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN----TLR 128 + + SLFS + +++ L ++ +D L + +++ K + LR Sbjct: 63 LAAPSLFSSIRCVVVRALENLPEESVDGLLAYAAAPAEDVALVLVHGGGAKGSGTLTKLR 122 Query: 129 KI--AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 K+ + S + + +I +EA L+ +G D + Sbjct: 123 KLETVTESKSGELRPS------EFPSFVAAEVRSHGSTIDQEAADFLVQAVGQDLRSLSA 176 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L++ ++ + VK + +A G+ A+ + L Sbjct: 177 AADQLTN-DFPGQPLSVEKVKQYFGGRAEAKSFAVADAAFWGRRTAALEELRWALDGGTA 235 Query: 247 SHALLHGF 254 + F Sbjct: 236 PVLVTSAF 243 >gi|312866199|ref|ZP_07726420.1| DNA polymerase III, delta subunit [Streptococcus downei F0415] gi|311098603|gb|EFQ56826.1| DNA polymerase III, delta subunit [Streptococcus downei F0415] Length = 346 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 123/335 (36%), Gaps = 29/335 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L F + ++ D F + ++ Q + + S Sbjct: 18 ITVVTGDDLGQYSQLKQLFLERVAFDPSDLAYSYFDFPENSFVDAQMD-------LESLP 70 Query: 79 LFSKKKIILIENL----STEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 FS +K+++ +NL + +K LD LE + + ++I + ++ L Sbjct: 71 FFSDEKVVIFDNLLDLTTAKKSYLDDRDAKSLEAYLTNPVETTRLVIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ + S + L ++ +K A + LL D + L Sbjct: 131 KLLKREGKIFEASQLKE--ADLRTHFQKVAHQAGLVFAKGAFEQLLIKSNFDFSEIQKNL 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L +Y D I + + I T I ++ +QGKI A L Sbjct: 189 AFLKAYK-ADGRIDQTDIDQAIPKTLQDNIFDLTQYILQGKIDQARDLVRDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 L+ L +F+L ++ I+ + + ++ + + I P + R N Sbjct: 248 KLIAIMLGQFRLFTQVKILAQAGKTESAMVAQLSELLGRKINPYQVKFALRDSRPLALNF 307 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQ-TILYIA 339 +++ + + + ++ L+K +F +L IA Sbjct: 308 LKQAMVILIETDYQIKQ-GKLDKAYLFDLALLKIA 341 >gi|300811323|ref|ZP_07091820.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497687|gb|EFK32712.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 329 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 99/276 (35%), Gaps = 26/276 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 N + + G D L L + + + + F + ++ + + Sbjct: 9 PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62 Query: 74 INSTSLFSKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122 + SLFS++K++L++N + K+ D L EI I + I+++ S E + Sbjct: 63 LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K EK + + A+ Y +++ + + A +L+ Sbjct: 123 RRKKLTKQVEKSFNTVSTAVKSYESG-----PVMQALVKAEGYRFAGGALDLLMERSDQV 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A+ KL + + I+ V I + + I+ A ++G AI D Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 L L+ F + + L + ++ + E Sbjct: 237 LREGTYPLQLVAVFFSQVEFLLCVKVMGQRRRSESE 272 >gi|260881566|ref|ZP_05404716.2| DNA polymerase III, delta subunit [Mitsuokella multacida DSM 20544] gi|260848770|gb|EEX68777.1| DNA polymerase III, delta subunit [Mitsuokella multacida DSM 20544] Length = 342 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 20/281 (7%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +F+ K VF+ G + I + + + + ++ Sbjct: 3 VKFSEFMAAIRKGELP--HVFLLGGEEPYYIDKAKEALLGKLFPGGTGMADALQKVSGDM 60 Query: 64 QKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIII 115 I I + F+ K +ILI S + K ++ L +I Sbjct: 61 A--IDDLLASIEAAPFFADKNVILIAGTNLFRESKSSADTKEVEALVRQFGDMPPYSYLI 118 Query: 116 IKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + + K L K L + P ++ D ++ L K + ++A Sbjct: 119 FVAPYKADKRRKLYKAL--AKEGLVLESEPLRAWNIQDWLQGKLQAIHKQMDRDAYAYFA 176 Query: 175 ANLGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 + + S + E KL+ + + IT+ + + + + +++A Sbjct: 177 GAVSMMQQISLSYLDKEFDKLALFS-KAPRITKAELIAVFSGLPEVSVFALLDAISARDG 235 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 A+ML LA LL + + L + ++ Sbjct: 236 KKALMLLHRQLADGTYFTVLLALLTRHVRQLWQAKVLMAKG 276 >gi|307721523|ref|YP_003892663.1| DNA polymerase III delta [Sulfurimonas autotrophica DSM 16294] gi|306979616|gb|ADN09651.1| DNA polymerase III delta [Sulfurimonas autotrophica DSM 16294] Length = 322 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 9/262 (3%) Query: 78 SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 SLF + I++I+ KK LD L E+ KN N + K +K K Sbjct: 65 SLFGDRNILIIKSEKKVPKKELDILLELCDKNPDNIFVYAYYGSDHKTYNNKKAFAKTK- 123 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + + +++ + +I K LL GD + NE+ K Y Sbjct: 124 AMNVRFFHPKEYEAQNIVFQLAQEKNVNIDKFTISHLLKIHNGDVALASNEIDKFRVY-- 181 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D IT + V +++ + +++ I + + L ++ Sbjct: 182 -DKAITTKDVDNLVYGLASINLDDFIKKLL--DKKDFRDDLLNILEHGEDEIRIISAITA 238 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 L +I + I +++ +++I + + + Sbjct: 239 YLTQLYMFNIYIRINGAPNALEILGYPAPSFIVEQKA-SAAIKI-KPQTYSKLHELLLNS 296 Query: 317 IHLARKKKYLEKNIIFQTILYI 338 + + I+ +++ + Sbjct: 297 ELQMKSSNVDKSAILLSSLIRL 318 >gi|297622798|ref|YP_003704232.1| DNA polymerase III subunit delta [Truepera radiovictrix DSM 17093] gi|297163978|gb|ADI13689.1| DNA polymerase III, delta subunit [Truepera radiovictrix DSM 17093] Length = 312 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 84/272 (30%), Gaps = 21/272 (7%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL-----IENLSTEKKVLDCLEEIIIKN 108 + L ++ + LF + ++L + + K + L+ + Sbjct: 29 EVTELGEGLSADGVAQL---AAQSGLFGQVALLLDFDAAFKGQAGVKPRNEVLKVLEGIP 85 Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 ++++ + L + L E Sbjct: 86 PDTVVVVLDLAATPARQKTYAALGHHEHLPTPRFNA-----LTHWVRAELQGAGVHFDDE 140 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 ++L G D + E+QKL+ ++ + V++I+ ++I A +G Sbjct: 141 VPEMLTDLFGEDLPSIAAEIQKLAVL---GERLSSERVREIVNRPASRDAFDLIEAVAKG 197 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + A+ + +A +L + ++ L+ + +KE + ++ +T Sbjct: 198 EAARALSVIRSLVAQGEAPPRVLGALVWQYNLVARTVALKEGRARTDAGLVAQT-----L 252 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 + + + L L ++ + A Sbjct: 253 KVKPFVAQKALALAAPLDEARLGRLLSALLKA 284 >gi|24212714|ref|NP_710195.1| DNA-directed DNA polymerase subunit delta [Leptospira interrogans serovar Lai str. 56601] gi|45655928|ref|YP_000014.1| hypothetical protein LIC10014 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193347|gb|AAN47213.1| DNA-directed DNA polymerase delta subunit [Leptospira interrogans serovar Lai str. 56601] gi|45599161|gb|AAS68651.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 362 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 13/212 (6%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIII 116 + F +E + +FS +K+ +I++ + + K + L++ + ++I Sbjct: 64 GDFERFQSEAFNLDIFSNRKLFIIKSGLEFFKPISTGKGKNNESLQKQFSNFPDSIQLLI 123 Query: 117 KSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 N + N L+ K + + YP+ + ++ + ++A L Sbjct: 124 HYNHWEVPNKVLQIFGGKANLIKTKNFYPNETR---GGLLQACKEIGVQLDEDAIDEFLH 180 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 + A L KL Y L + T+Q ++D++ + +++ ++ Sbjct: 181 KIPPSMGAYLQSLSKLKLY-LSKKIFTKQDIEDVLLFSGEFNSSGLVDFFMESDRIRFFK 239 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 F + K +K L K II Sbjct: 240 ELKKFQSGKDSLLLFFSILKEKIDQLRKYKII 271 >gi|116627591|ref|YP_820210.1| DNA polymerase III subunit delta [Streptococcus thermophilus LMD-9] gi|116100868|gb|ABJ66014.1| DNA polymerase III, delta subunit [Streptococcus thermophilus LMD-9] Length = 344 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + +F K I D F + + + + + + S Sbjct: 17 KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +K+++ ++ + ++K L LE + + +++ + ++ L Sbjct: 70 PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ VL + D + L ++ + K + LL D + Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQTHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L Y + I+ Q + + I + I ++ ++G+I + L Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F+ ++ ++ S ++I+ + + P + R + Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ T+ + + + + ++ +L IA + Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344 >gi|238927634|ref|ZP_04659394.1| DNA polymerase III, delta subunit [Selenomonas flueggei ATCC 43531] gi|238884559|gb|EEQ48197.1| DNA polymerase III, delta subunit [Selenomonas flueggei ATCC 43531] Length = 347 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 39/355 (10%), Positives = 114/355 (32%), Gaps = 33/355 (9%) Query: 7 HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 H+F+ + +++ G + I + + + ++ E+ Sbjct: 4 HEFMASLAQGTPPQ--IYLLAGEEPYYIRRAEEAILRRLLPDAA-ERADALIRYEEMPA- 59 Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH-------------- 112 I + + F+ K ++L+ + + + E Sbjct: 60 IDALAESLETAPFFTDKIVVLVHDAAVFRAGKKAAEGDTPAPKDAAAERLLSLLTNLLPT 119 Query: 113 -IIIIKSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 ++ N K L + +K + + ++ + E L +S+ +EA+ Sbjct: 120 TYVVFTLNAKPDKRRKLYQAVQKAGRI--LESELVRPWNVEGWLNERLREMGRSMQREAR 177 Query: 171 QILLANLGGDRIASR----NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 L +G + S +L+KL+ Y ++ TE ++ + + + +++A Sbjct: 178 TFFLNVVGMMQTISLEFLDRQLEKLTLYT-DNKQFTEADLRAAFSEMPEVSVFALMDAIS 236 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKN 285 + A+ L A + LL ++ + L + ++ + + Sbjct: 237 ARDVRRAMDLLARCRADGVHFTVLLALLVRHVRQLWQAKRLLMNGTPPKGLGKVMGLHPF 296 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 I L + +++ + + + +L K ++ ++ + + Sbjct: 297 I----AEKLGGHAKAFSEATLEHAVLALADADYLL-KTGQAGDELLEDALIRLCR 346 >gi|329667526|gb|AEB93474.1| hypothetical protein LJP_1152c [Lactobacillus johnsonii DPC 6026] Length = 329 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 117/331 (35%), Gaps = 66/331 (19%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80 + G D F + Y + S L+ + + + + SLF Sbjct: 17 LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IKKNNTLRK 129 S +K+++++N KK ++ L +II ++ + ++ + + E I + + K Sbjct: 69 SNQKVVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLSDLEDVVVFVANYEKIDRRKKISK 128 Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + +V+ Y + +I+ I+ A QIL+ S + Sbjct: 129 LLLEHVNVVETTFKPYE-----VSGIIKAISKEEGYQITNMALQILIQRSDQVLDVSLSN 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL + ED ITE + + I + I EI+ A K A + L + Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL F +F+ L + ++ R W+K+ + Sbjct: 244 IQLLAIFESQFEFLTCVKVL-----------------------------QNRRWSKDQIT 274 Query: 308 ETLH--------KIDHRIHLARKKKYLEKNI 330 + L +++++ L++ L++ I Sbjct: 275 KELKVNPYRVKLALENKVSLSKLTVLLKQAI 305 >gi|78776741|ref|YP_393056.1| DNA polymerase III subunit delta [Sulfurimonas denitrificans DSM 1251] gi|78497281|gb|ABB43821.1| DNA polymerase III, delta [Sulfurimonas denitrificans DSM 1251] Length = 320 Score = 59.6 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 34/286 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 FI +G LI + ++ S++ E N + ++ SLF + Sbjct: 19 FILFGESTFLIDRYTDILS------INEGASVLKFYHDEYNFNSAKAH--LSQASLFGDQ 70 Query: 84 KIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIK--------SNEIKKNNTLRKIAEKF 134 I++I+ KK LD L E K N + + + K T+ Sbjct: 71 NILIIKSEKKIPKKELDILIEQCEKGSDNIFVYAYYGSDYTSYAKPLSKTKTMPVRFFHP 130 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + AI+ + + I +A LL D + NE++KL Y Sbjct: 131 SHSEAIAS-----------VAQIAHEKNVKIDTQAINHLLNIQNSDIALACNEIEKLRVY 179 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D IT + + +I + I++ I + + L LL Sbjct: 180 ---DRAITTKDIDSLIFGLAQINIDDFIKKIL--NKRDFKSDLMSLLEHGEDEIRLLTAL 234 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L +I + I + ++ ++++I Sbjct: 235 TSYLTQLYMFNIYIRVNGAPNPIEILGYKPPPHVVEEKA-TQAIKI 279 >gi|220912734|ref|YP_002488043.1| DNA polymerase III subunit delta [Arthrobacter chlorophenolicus A6] gi|219859612|gb|ACL39954.1| DNA polymerase III, delta subunit [Arthrobacter chlorophenolicus A6] Length = 317 Score = 59.6 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 100/305 (32%), Gaps = 23/305 (7%) Query: 23 VFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G D I ++ + +NA + + ++ S SLF Sbjct: 6 IVLVSGPEDYLGI--RAMDSIRSQVRQAAPDVEVSRINAAAYE--PGSLLMQV-SPSLFG 60 Query: 82 KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 + K+I +E + + + L + + + +++++ + L K + + Sbjct: 61 ESKLIEVEAVEAMNEPFLTDALSYLGQPADDAVLVLRHGGGARGKKLLDAVRKGGWPV-V 119 Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 C P M + Q+ I +EA L+ +G + +L Sbjct: 120 DCQPLKKDTDKMAFVSAEFKAAQRRIDQEAVLALVNAVGANLSELAAACSQLI--ADSTG 177 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +T V ++ +A + G A+ LA+ L+ K + Sbjct: 178 TVTPDVVDRYYGGRVEATAFKVADAAMAGNGPLALSTLRHALATGADPVPLVAALAAKLR 237 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKIDHR 316 + + ++ S +I + M+ +++++ +R W + + ++ Sbjct: 238 TVAR----VAGASGSAAQIAAELG-----MQPWLVEQAQRDVRRWTPDGLVRSIQATAEA 288 Query: 317 IHLAR 321 + Sbjct: 289 DAQVK 293 >gi|227486714|ref|ZP_03917030.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235302|gb|EEI85317.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC 51172] Length = 338 Score = 59.6 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 126/333 (37%), Gaps = 32/333 (9%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F + F + +++F ++ L +I + ++ I+I F+L+ + + + Sbjct: 5 EFFKNFVN--FKTAGIYLFDSKEEYLNTTIIEEAERLINIK---DFNLIKIKG---ETDF 56 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKK-------VLDCLEEIIIKNICNHIIIIKSNE 120 T N + + KKII+ +N+ K +L+ L E K ++I S+ Sbjct: 57 ETMKNSYETYPVMEDKKIIIWQNIDLSKDGVKNYNIILEKLAEDAKKFPSYATLLIFSDT 116 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQ------- 171 K K +++ I D N L I + +K IS Sbjct: 117 TPFKGKFYKEISKNGTIVEI----DRLNNNELRSFIGRRFIKNKKKISNTYIDEIINRFS 172 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 L N D N + K+ S ++ +I ++ ++D + L I + +A I Sbjct: 173 YLAYNSEIDLFEIVNSVDKIISNSTDE-IIKKEDIEDQLDQVLNLNIFNLTDAIASKNIK 231 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 A S + H +++F++L + + N + I++ ++ +++ Sbjct: 232 GAFKTLLLMEKSGEDLFMIYHMLIRQFRILTTVKSLS-NQNFNDSFIMKASKIGSFELRK 290 Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 +++ ++ + + + ++ ++ + Sbjct: 291 AK--ANIKNYSMDSLIDINDRLMDMELRSKSES 321 >gi|326333921|ref|ZP_08200152.1| DNA polymerase III, delta subunit [Nocardioidaceae bacterium Broad-1] gi|325948282|gb|EGD40391.1| DNA polymerase III, delta subunit [Nocardioidaceae bacterium Broad-1] Length = 327 Score = 59.2 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 39/334 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G ++ L E K Y + A ++ E+++ SLFS Sbjct: 22 RVTLVTGKEEFL-GERTVAAAKAAVKEYDAEAEISEATAADL---TLATLGELSAPSLFS 77 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + +++ NL + + L + +I++ K + TL K+ K V Sbjct: 78 SIRCVVVRNLENLPDESVAGLVDYAGMPSEEVALILVHGGGQKGSGTLAKL-RKLPKVTE 136 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR---------NELQK 190 ++ + + S+ +E L+ +G D A NE ++ Sbjct: 137 HKSVELKAREFGSFVKAEMRLHGASLDEEGADFLIQAVGQDLRALAAAASQLAGDNEAKR 196 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L +HVK + I +A I G A+ + L + + Sbjct: 197 LGL----------EHVKQYFGGRAEVKNYVIADAIISGDRVKALEEIRWALDTGSSPVYV 246 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + + + I +++I + R W++ + E L Sbjct: 247 LSAVAGQ------LRTVAN----HVAGIRDSNTPP--WKQKSIAGLA-RGWSREAIGEAL 293 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + + + + +L IA + Sbjct: 294 RSVARADADLKGAASDPAYTLERLVLTIAALRQR 327 >gi|116513862|ref|YP_812768.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093177|gb|ABJ58330.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 329 Score = 59.2 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 26/276 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 N + + G D L L + + + + F + ++ + + Sbjct: 9 PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62 Query: 74 INSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNIC-NHIIIIKSN--EIK 122 + SLFS++K++L++N + K+ D L EI + +I++ ++ ++ Sbjct: 63 LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K E+ + + A+ Y +++ + + A +L+ Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A+ KL + + I+ V I + + I+ A ++G AI D Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 L ++ F + + L + ++ + E Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272 >gi|117927983|ref|YP_872534.1| DNA polymerase III, delta subunit [Acidothermus cellulolyticus 11B] gi|117648446|gb|ABK52548.1| DNA polymerase III, delta subunit [Acidothermus cellulolyticus 11B] Length = 342 Score = 59.2 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 100/288 (34%), Gaps = 13/288 (4%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + G ++ L+ + + + ++ + A E+ + + SL Sbjct: 22 ASSLIVIIGDEEFLVDRAVRRLIDETVGSDRASADVLQVEAAELDG--GRLAT-LVAPSL 78 Query: 80 FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FTS 136 F+ ++++++ N + K+ D L + + + + + + K N + + E Sbjct: 79 FADQRVVVLRNADALSKESADELLSLCRRAVDDPTLHVILTHRGKTNRGKTVLEDVLGLG 138 Query: 137 VLAISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I C +D + +SIS++ + L+ +G D +L++ Sbjct: 139 ARRIDCPRLTRTGERIDFVRGEFAAQGRSISEDTARALVDAIGADVAELAAACAQLAADT 198 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT V+ + +A + G+ A+ + LA+ ++ Sbjct: 199 --TGRITADVVRRYFRGRADASGFAVADAILDGERSVALEQLRWALATGTAPVLIVGAVA 256 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 Q ++L + + ++ P + + + LR W Sbjct: 257 QGLRVL--ARVGSAGRGRRPADVARELGLP--PWRVDRARAQLRHWTP 300 >gi|291277460|ref|YP_003517232.1| putative DNA polymerase III subunit delta [Helicobacter mustelae 12198] gi|290964654|emb|CBG40509.1| putative DNA polymerase III, delta subunit [Helicobacter mustelae 12198] Length = 326 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 107/311 (34%), Gaps = 34/311 (10%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M E + KS +FYG D + + + K I D ++ L Sbjct: 1 MYKKEFDALLAKSIPQ------AMLFYG-DGFYV----DFYTKKILQKMQDA-NITTLYF 48 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 + Q + + + + SLF +++++ + KK L + +N N +II N Sbjct: 49 SDYQLD--SVLDILGQGSLFGGNNVVVLKLDSKLSKKECQILLGCLKENPANALII---N 103 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM----------DLIEESLLIGQKSISKEA 169 ++ N + + + A + +N I + +++E I Sbjct: 104 FLRSENKTLAQYGQDSRIFASNFQAENAIDVQFFAPSFSEGVGILKERSRELDIDIEDFL 163 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 Q LL GD + ELQK Y + + IT Q ++ + + +E+ + + Sbjct: 164 LQNLLQIQNGDIAIALGELQK---YQIFEEKITLQDLQQLSYGLGSVDMEDFLESLFG-- 218 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + + + + +L + F +L + K I + + Sbjct: 219 REDYLQVYERLQEEGGDGMEVLGFLERYFFILFSFCAYIKSHGFYKAKEILGYQPP-DFV 277 Query: 290 KRNILQESLRI 300 + +++I Sbjct: 278 AKQYANRAIKI 288 >gi|23268608|gb|AAN16455.1| hypothetical DNA polymerase III delta subunit [Streptococcus thermophilus] Length = 344 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 115/338 (34%), Gaps = 27/338 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + +F K I D F + + + + + + S Sbjct: 17 KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +K+++ ++ + ++K L LE + + +++ + ++ L Sbjct: 70 PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ VL + D + L ++ + K + LL D + Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L Y + I+ Q + + I + I ++ ++G+I L Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQEVRELVHDLRLQGEDE 246 Query: 248 HALLHGFLQKFQ---LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L+ L +F+ ++ + + + + + P + R + Sbjct: 247 IKLIAVMLGQFRTYLQVKLLSAQGKSEQQMVSSLSDYLSRKVNPFQVRYAIRDSRHLSVA 306 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ T+ + + + + ++ +L IA + Sbjct: 307 FLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344 >gi|12045171|ref|NP_072982.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium G37] gi|255660453|ref|ZP_05405862.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium G37] gi|2496380|sp|Q49416|Y315_MYCGE RecName: Full=Uncharacterized protein MG315 gi|3844892|gb|AAC71537.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium G37] gi|166078740|gb|ABY79358.1| DNA polymerase III, delta subunit, putative [synthetic Mycoplasma genitalium JCVI-1.0] Length = 297 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 21/227 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS--K 82 I YG D GLI + ++Q K N P+ + K++ ++ + S LF Sbjct: 3 IIYGQDIGLIHQKLSQIKSNS------PYKTIWF------KDLKQLYD-LFSQPLFGSNN 49 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 +K I+ EK L E + ++ + +++ + ++ I S+ + C Sbjct: 50 EKFIVNNCSFLEKTSLTRQENLCLEKLKTTDVVLTVYTDNPFSGIKTI----KSITTVFC 105 Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + + I E + E L L + E+ KLS ++ + Sbjct: 106 DKLDWKSMHKAIGEVCRELNLKLDLEIIDWLANALPLNMGVIYQEINKLSL-LGKNEIKD 164 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + V+ +ICD + I ++ A +I A D LAS P+ A Sbjct: 165 NKLVETVICDYQPVQIYKLTKALTNSQIVKAFKYIDE-LASTKPNFA 210 >gi|322391770|ref|ZP_08065235.1| DNA-directed DNA polymerase III delta subunit [Streptococcus peroris ATCC 700780] gi|321145250|gb|EFX40646.1| DNA-directed DNA polymerase III delta subunit [Streptococcus peroris ATCC 700780] Length = 345 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 105/273 (38%), Gaps = 25/273 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +F G+D+G + Q K I D F+ + ++ + E+ S F+ + Sbjct: 20 LFTGADQGQYDIMKTQVLKQIGYDPADLNFAYFYMKEVDYKS----LELELVSLPFFADE 75 Query: 84 KIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEK 133 KI++++ +++T KK L E+ + + + ++I + ++ L K+ ++ Sbjct: 76 KIVILDHFLDITTAKKRYLTDDELKSFEDYLENPLPSSKLVIFAEGKLDSKRRLVKLLKR 135 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + L ++ + + + LL G +E+QK Sbjct: 136 D--AAVFEAIEPKEQELRAYFQKWAQEQGLTFDGNSFEQLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + + LITE+ + + I T I ++ + KI A L L Sbjct: 190 FLQSYKDSGLITEEDIVEAIPKTLQDNIFDLTQLILGDKIDQARDLVKDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + L +F+L ++ I++E S + +++ Sbjct: 250 IAIMLGQFRLYTQVKILQE-SGQTESQMVSSLG 281 >gi|123967070|ref|YP_001012151.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9515] gi|123201436|gb|ABM73044.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9515] Length = 333 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 108/300 (36%), Gaps = 36/300 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D + I + ++ LN + I ++EI + L Sbjct: 2 PIQIIWGNDLNACNKFIKKIIDQKVSKIWIEINVSYLNGDD-DNQIKQAFDEILTPPLGD 60 Query: 82 KKKIILIENLSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKK-NNTLRK------- 129 ++++++N + E+I N I++ IKK ++ L+ Sbjct: 61 GSRVVVLKNNPIFTNKNEDIRIKFEKIYQNIPDNTYFILQ--NIKKPDSRLKSTKFIQNL 118 Query: 130 -----IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + E S+ I Y K +L + + A ++++ ++G D Sbjct: 119 IKKDLVLETSFSLPDIWDYEGQKRYLEVTANSM----NIQLGEGAAELIMKSIGNDSFNL 174 Query: 185 RNELQKLSSYCLEDIL-------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 RNEL K Y + +K+I D I +II+ +Q I +++ Sbjct: 175 RNELAKAKIYLSASNRNETKELILKVDEIKNIFNDHQS-NIFKIIDHLLQNNINESLIDI 233 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293 + L P+ L G + + ++ + ++ + I + K I +++ + Sbjct: 234 HYLLKKGEPALRLNAGLISQIRIHTIVKLLHKSGEQDLPTICKIANISNPKRIFFIRKKV 293 >gi|15673636|ref|NP_267810.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis Il1403] gi|12724666|gb|AAK05752.1|AE006396_3 hypothetical protein L102491 [Lactococcus lactis subsp. lactis Il1403] Length = 334 Score = 59.2 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G + L+ EL NQ ++ D S + +++ ++ S FS Sbjct: 18 ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74 Query: 83 KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132 +++++ENL + +K VLD E + +++I ++ + K + Sbjct: 75 SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189 ++L L + L+ IS ++ A + + + Sbjct: 135 AKATLL-------EAQELKS---QELIQYFSRISPLPKVVLSLIAAKSNDNFSVMKQNID 184 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + +Y L +T V+ ++ + I + + +GKI A L Sbjct: 185 LVQTYALG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++L ++ + + + + + + P + + +R N ++ Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300 Query: 310 LHKI 313 L + Sbjct: 301 LSDL 304 >gi|55980757|ref|YP_144054.1| DNA polymerase III subunit delta [Thermus thermophilus HB8] gi|55772170|dbj|BAD70611.1| DNA polymerase III, delta subunit [Thermus thermophilus HB8] Length = 292 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 11/222 (4%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159 L+ ++ +++ K + R + L+ +E Sbjct: 64 ALKPLLESVPEGVPVLLLDP---KPSPSRAAFYRNRERRDFP--TPKGKDLVRHLENRAK 118 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + Q L + L GD A EL+KL+ +T + V+ ++ L Sbjct: 119 RLGLRLPGGVAQYLAS-LEGDLEALERELEKLALLSPP---LTLEKVEKVVALRPPLTGF 174 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 +++ + ++ A++ LL +F LL + + + E+ + Sbjct: 175 DLVRSVLEKDPKEALLRLRRLKEEGEEPLRLLGALSWQFALLARAFFLLRENPRPKEEDL 234 Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + E + +R + E+ + + ++E L + A+ Sbjct: 235 ARLEAHPYAARRAL--EAAKRLTEEALKEALDALMEAEKRAK 274 >gi|148272731|ref|YP_001222292.1| DNA polymerase IIIsubunit delta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830661|emb|CAN01597.1| DNA polymerase III, delta subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 342 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 113/306 (36%), Gaps = 21/306 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G++ L+ + + ++I + + A + S SLF+ Sbjct: 29 PIVLVSGTEA-LLADRAMRRLRDILTAEDPRIEVSDIEADSYA--PGELIT-LASPSLFA 84 Query: 82 KKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVL 138 + ++I + N S+++ +LD + + + + ++++ + ++ L + + Sbjct: 85 EPRLIRVVNVEKSSDQFLLDAVA-YLDQPADDTYVVLRHAGGVRGKKLLDAVRAGTGGGI 143 Query: 139 AISCYP---DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + C D++ H D ++SI+ A + L+A D + Q+L Sbjct: 144 EVVCAELKKDSEKH--DFAVAEFRAAKRSITPGAVRQLVAAFQDDVSELASACQQLI--S 199 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ITE V + + ++ I G+ A++L L S L+ F Sbjct: 200 DTAHEITEVTVDQYYGGRVEINAFAVADSAIAGRGGEALVLLRHALTSGADPVPLIAAFA 259 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 KI + + S +S ++ + P + + + L++W+ + + + Sbjct: 260 ------MKIRTMAKVSGVSGASGQLASKLGMAPWQVDRARRDLQLWDDAGLGRAIEALAE 313 Query: 316 RIHLAR 321 + Sbjct: 314 ADAQVK 319 >gi|46198742|ref|YP_004409.1| putative cytoplasmic protein [Thermus thermophilus HB27] gi|46196365|gb|AAS80782.1| hypothetical cytosolic protein [Thermus thermophilus HB27] Length = 292 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 16/243 (6%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159 L+ ++ +++ K + R + L+ +E Sbjct: 64 ALKPLLESVPEGVPVLLLDP---KPSPSRAAFYRNRERRDFP--TPKGKDLVRHLENRAK 118 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + Q L + L GD A EL+KL+ +T + V+ ++ L Sbjct: 119 RLGLRLPGGVAQYLAS-LEGDLEALERELEKLALLSPP---LTLEKVEKVVALRPPLTGF 174 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 +++ + ++ A++ LL +F LL + + + E+ + Sbjct: 175 DLVRSVLEKDPKEALLRLRRLKEEGEEPLRLLGALSWQFALLARAFFLLRENPRPKEEDL 234 Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILY 337 + E + K+ + E+ R + ++E L + A+ K +L + +L Sbjct: 235 ARLEAHPYAAKKAL--EAARRLTEEALKEALDALMEAEKRAKGGKDPWLA---LEAAVLR 289 Query: 338 IAQ 340 +A+ Sbjct: 290 LAR 292 >gi|301321382|gb|ADK70025.1| DNA polymerase III, delta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 316 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ FY D L+ NQ KK I D + + L+ I+ + +T ++ + + + FS Sbjct: 1 MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55 Query: 82 KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 K II+I + + L+ LE ++ N+III + SN+ K + K Sbjct: 56 SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 115 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +V + D K + +I+ L K I + L D NE+ K Sbjct: 116 IESSFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 173 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ + +K + H I ++++A I I I L ++ L Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGL 230 Query: 251 L 251 + Sbjct: 231 I 231 >gi|55820785|ref|YP_139227.1| DNA polymerase III subunit delta [Streptococcus thermophilus LMG 18311] gi|55736770|gb|AAV60412.1| DNA polymerase III delta subunit [Streptococcus thermophilus LMG 18311] Length = 344 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + +F K I D F + + + + + + S Sbjct: 17 KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +K+++ ++ + ++K L LE + + +++ + ++ L Sbjct: 70 PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ VL + D + L ++ + K + LL D + Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L Y + I+ Q + + I + I ++ ++G+I + L Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F+ ++ ++ S ++I+ + + P + R + Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ T+ + + + + ++ +L IA + Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344 >gi|42561461|ref|NP_975912.1| hypothetical protein MSC_0945 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492960|emb|CAE77554.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 319 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ FY D L+ NQ KK I D + + L+ I+ + +T ++ + + + FS Sbjct: 4 MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 58 Query: 82 KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 K II+I + + L+ LE ++ N+III + SN+ K + K Sbjct: 59 SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 118 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +V + D K + +I+ L K I + L D NE+ K Sbjct: 119 IESSFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 176 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ + +K + H I ++++A I I I L ++ L Sbjct: 177 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGL 233 Query: 251 L 251 + Sbjct: 234 I 234 >gi|313894529|ref|ZP_07828093.1| putative DNA polymerase III, delta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313440925|gb|EFR59353.1| putative DNA polymerase III, delta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 325 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 38/319 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG + LI E +F + VL+ + ++ SLF +K Sbjct: 6 LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57 Query: 85 II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 + +I L E+I++ ++ I++ +++ + +++ E + Sbjct: 58 VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGDNPILLIYHDM-IDKRIKQNKEILDKIP 116 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194 C L+ I + + +A++ + L D S R E + Sbjct: 117 NHQCKRLVGADLVMWIRQYCTSNGFKMMPDAQEYVAHLVDLWQDVPVSFMRTEFDRYFLQ 176 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252 + +IT++ +++ D I A ++ I + L F K + + + Sbjct: 177 ITGEKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLKLFPFMFGYKELDRAMSYIE 236 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304 G L+ L+ + + +S + I + I + + S RI + Sbjct: 237 GQLR----LQLLVNECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASSRI-STK 287 Query: 305 LVRETLHKIDHRIHLARKK 323 +R L + I +R Sbjct: 288 ALRALLKGLYEIILDSRSS 306 >gi|281492235|ref|YP_003354215.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis KF147] gi|281375906|gb|ADA65400.1| DNA polymerase III, delta subunit [Lactococcus lactis subsp. lactis KF147] Length = 334 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G + L+ EL NQ ++ D S + +++ ++ S FS Sbjct: 18 ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74 Query: 83 KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132 +++++ENL + +K VLD E + +++I ++ + K + Sbjct: 75 SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189 ++L L + L+ IS ++ A + + + Sbjct: 135 AKAALL-------EAQELKS---QELIQYFSRISPLPKAVLSLIAAKSNDNFSVMKQNID 184 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + +Y L +T V+ ++ + I + + +GKI A L Sbjct: 185 LVQTYALG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++L ++ + + + + + + P + + +R N ++ Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300 Query: 310 LHKI 313 L + Sbjct: 301 LSDL 304 >gi|171778638|ref|ZP_02919734.1| hypothetical protein STRINF_00586 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282595|gb|EDT48019.1| hypothetical protein STRINF_00586 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 345 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 27/305 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G +L + + + D F + +N + + + + S Sbjct: 18 IMVVTGEDLGQFSQLKERMMERVGYDKDDLTYSYFDMTEVNYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENL----STEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ +NL + +K LD E + + +II + ++ L Sbjct: 71 FFADQKVVIFDNLLDITTAKKSYLDDKELKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ + + L ++ + LL D + Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLVFDSGVFEALLLKSNYDFSEILKNI 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS- 247 L SY +D ITE + I T I ++ + GKI A L Sbjct: 189 AFLKSYK-KDGHITEDDINQAIPKTLQDNIFDLTQFVLNGKIDEAHELIRDLRLQGEDEI 247 Query: 248 --HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 A++ G L+ F + + + + + + + P + R + Sbjct: 248 KLIAIMLGQLRMFLQVSILASQGKNEQQMVATLSEYLGRRVNPYQVKFAVRDSRTLSMTF 307 Query: 306 VRETL 310 +++ L Sbjct: 308 LKKAL 312 >gi|308274788|emb|CBX31387.1| hypothetical protein N47_E48990 [uncultured Desulfobacterium sp.] Length = 494 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 86 ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYP 144 I + L+ I + +I+ + + K L K EK + I C Sbjct: 175 IRVLESIDSASFF--LKAIDKGFPEGNHLIVTALLVDKRLVLYKALKEKG---VIIDCQV 229 Query: 145 DNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I E L K+I +A + G D A N L+KL ++ Sbjct: 230 PKGDSKNEKIVRENIIRERMNEILTKSGKTIDNDAYSAMYEKTGFDLRALLNNLEKLINF 289 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + IT + V+ ++ T I + NA I +++ D L + + L Sbjct: 290 T-DKNKITVEDVESVLKRTKQDPIYALTNAVSGRNITDSLFYLDSLLYAGIHPLQALAAI 348 Query: 255 LQKFQLLEKIH 265 + + + + I Sbjct: 349 INQIRKIIYIK 359 >gi|282859338|ref|ZP_06268449.1| DNA polymerase III, delta subunit [Prevotella bivia JCVIHMP010] gi|282587884|gb|EFB93078.1| DNA polymerase III, delta subunit [Prevotella bivia JCVIHMP010] Length = 342 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 106/287 (36%), Gaps = 23/287 (8%) Query: 5 ESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 + Q+ +L + ++ G + I ++ + N+ F+ + + Sbjct: 4 KLDAIFQRVIADLKAKKYAPFYLLMGEESYFIDKISDFIANNVLEPEMRDFNQTICFGSD 63 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSN 119 + + + + ++ ++I+++ + + + LE+ + + I++ K+ Sbjct: 64 VS--CAQVVDMAKRYPMMAEHQVIIVKEAQNVRSL-EPLEKYLSGQLVKSTILVWCHKNG 120 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILL 174 I + K+A V + + L D I+E L + +I +AKQ++ Sbjct: 121 SIDGKKKIVKLANAAGVVF-------DSVKLRDYQLPIFIQEYLDAKKVTIDPKAKQMVA 173 Query: 175 ANLGGDRIASRNELQKLSSYCLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 +G D +EL K+ E+ +IT V+ I + E+ NA +Q I+ A Sbjct: 174 DAVGADLNRLTSELDKVMISLPENGMMITPDIVEKEIGISKDFNAFELRNAIVQKNIFKA 233 Query: 234 IMLADFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKI 278 + +F + L F+ L H I ++ Sbjct: 234 NQIIKYFDNNPKAGSLYSFLPMLFSYFRDLMIAHYIPGNNSEDALAA 280 >gi|310822491|ref|YP_003954849.1| DNA polymerase III subunit delta [Stigmatella aurantiaca DW4/3-1] gi|309395563|gb|ADO73022.1| DNA polymerase III, delta subunit [Stigmatella aurantiaca DW4/3-1] Length = 439 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 15/240 (6%) Query: 89 ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-----TSVLAISCY 143 + E LE + H +++ ++++ + L K A+ V A Sbjct: 169 RVSAPEGDASALLELLQKGLPKGHALVLAASDVDAKSALLKFAKDEGWFIERKVAA---- 224 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + L ++ E L +K + A + L +GG+ ++EL+KL+ Y I Sbjct: 225 RHKDLDLSEIAREFLAPFKKKLGAGALEQLKERVGGNIRLLQSELEKLAIYANG-ATIEA 283 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V ++ E+ + + + A+ A+ + + LL + L + Sbjct: 284 ADVALLVHHAREEEFFELSESIQKRDLRGALDYAEDAMGQGTHALQLLGAVASIIRGLLE 343 Query: 264 IH-----IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + SF+ + I + + W L + + + R Sbjct: 344 NRERLGLYAQGAVPRSFDDFKARLFPKIEQEAKAAKGRAPHPWAAFLSMQAAARYERREL 403 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ +G + L+ + ++ K + + VL+A + E+ + LF Sbjct: 19 PLYLLWGEE-FLVRKGADELVKALVPDAAMGLNHAVLDA----ASPREVAQELATLPLFP 73 Query: 82 KKKIILIEN---LSTEKKVLDCL 101 +K++L+ + L+ +K D L Sbjct: 74 GRKVVLVRDPEFLAPKKGRGDAL 96 >gi|325125519|gb|ADY84849.1| Putative DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 329 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 26/276 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 N + + G D L L + + + + F + ++ + + Sbjct: 9 PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62 Query: 74 INSTSLFSKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122 + SLFS++K++L++N + K+ D L EI I + I+++ S E + Sbjct: 63 LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K E+ + + A+ Y +++ + + A +L+ Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A+ KL + + I+ V I + + I+ A ++G AI D Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 L ++ F + + L + ++ + E Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272 >gi|284048788|ref|YP_003399127.1| DNA polymerase III, delta subunit [Acidaminococcus fermentans DSM 20731] gi|283953009|gb|ADB47812.1| DNA polymerase III, delta subunit [Acidaminococcus fermentans DSM 20731] Length = 353 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 86/277 (31%), Gaps = 26/277 (9%) Query: 68 STFWNEINSTSLFSKKKIILIENLS--TEKKV---------------LDCLEEIIIKNIC 110 IN+ F ++IE+ TEK L+ E++ Sbjct: 62 EALGEAINTMPFFGGGNWVVIEDPRVLTEKAPARKTGTKGKGKKVTPLEQFTELLSDVPD 121 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + ++ K K + + C L + + +A Sbjct: 122 YAYVFCLCTKLDKRQGFYKA--MSRKAVVVECPTLRSYQLQPWLRSQADQYGARFTPDAL 179 Query: 171 QILLANLGGD----RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 ++ + + E+ K++ Y E L + V + + + NA Sbjct: 180 NLIQEYASAADTVPLLFLQQEIAKIALYAGERKLWQAEDVAQMFSQLPEISGFALGNAV- 238 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE-CSNISFEKIIQKTEKN 285 + + + ++L S + ++ F L ++ +KE + + I T K Sbjct: 239 EERKLDKVLLLLKEERKNSGSDGITGLAMRLFASLRRLLQVKEMVKQGARQDAIASTLK- 297 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + P + + +++ ++ + ++ +R+ Sbjct: 298 MHPYAVKLAMQHSNYFSEESLQNGMVQLARLTADSRQ 334 >gi|329946978|ref|ZP_08294390.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328526789|gb|EGF53802.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 343 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 103/327 (31%), Gaps = 23/327 (7%) Query: 33 LIFELINQFKKNISITY-------HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 LI + + L A + + + S SLF + ++ Sbjct: 31 LIRAGEEVLADRTVTSLLSQARAKDPTTEVTRLEAATYE--PHQL-DTLVSPSLFGEPRL 87 Query: 86 ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 + + L +L L + +I++ N ++ L + C Sbjct: 88 VYVPALEQMTDALLADLLAYVEAADPEVSVILRHNGGQRGKRLLDAIRSSPY-PTVQCDA 146 Query: 145 -DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 N L+ + +SI+ EA L+ LG D + + +L I+ Sbjct: 147 IKNAKDKSSLVVADVRRAGRSIAPEAVGALVDALGSDVRELCSAVDQLL--ADTQGTISV 204 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 HV+ + +A G AI +A+ A++ K + L + Sbjct: 205 DHVRTYYAGRIEATGFTVADAAAAGNTPAAITALRHAVATGTDPVAIVAALAMKVRQLAR 264 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + + + + E + P + + + L+ W+ + + ++ + A+ Sbjct: 265 VAA-------AGGRRMSPAELGMAPWQVDRARRELQGWSDDALATSILAVARADAEAKGA 317 Query: 324 KYLEKNIIFQTILYIAQTACKNNNFYK 350 + + +L I A ++ + Sbjct: 318 SRDPVYAVERAVLTICN-ARRSGTRRR 343 >gi|54023361|ref|YP_117603.1| hypothetical protein nfa13940 [Nocardia farcinica IFM 10152] gi|54014869|dbj|BAD56239.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 321 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 11/291 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + G ++ LI + ++ DP ++ V + + E+ S SLF++ Sbjct: 8 VHLVLGEEELLIERAVAAIVGDVRAVAPDPEAVPVDRLRAGDASTAELA-ELLSPSLFAE 66 Query: 83 KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++I++E+ + K + + ++++ + + + +K +V+ Sbjct: 67 DRVIVLESAAEAGKDAVGVITTAAADPPEGVVLVVLHSGGGRAKAMAPALQKAGAVVHNC 126 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 ++ + +S E Q +L +G D +L + + Sbjct: 127 AKLTKAAERVEFVRAEFRAAGVRVSGEVVQTVLEAVGSDLRELAAACSQLVADTGGK--V 184 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 V+ + E+ + G A+ + + +P L + Sbjct: 185 DVAAVRRYYSGRAEVTGFEVAELAVAGDRGAAVEALRWAIDRGVPHVLLADALA---DSV 241 Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH 311 I + K+ Q+ + ++ R W + L Sbjct: 242 HTIARVGSAGRGDPFKLAQQLGMPP--WKVKKAQAQA-RGWTPATIGSALQ 289 >gi|104773855|ref|YP_618835.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422936|emb|CAI97598.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 329 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 26/276 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 N + + G D L L + + + + F + ++ + + Sbjct: 9 PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQSA------FQGLEKVTVDCESDPLDDLIAA 62 Query: 74 INSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIK 122 + SLFS++K++L++N + K+ D L EI + + +I++ ++ ++ Sbjct: 63 LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K E+ + + A+ Y +++ + + A +L+ Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A+ KL + + I+ V I + + I+ A ++G AI D Sbjct: 178 LDAALGNYNKLKA-ISDGQEISWDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 L ++ F + + L + ++ + E Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272 >gi|126436100|ref|YP_001071791.1| hypothetical protein Mjls_3523 [Mycobacterium sp. JLS] gi|126235900|gb|ABN99300.1| DNA polymerase III, delta subunit [Mycobacterium sp. JLS] Length = 320 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 21/297 (7%) Query: 25 IFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + G ++ L+ + K+ + D + L A E+ + E+ S SLFS + Sbjct: 10 LVLGDEELLVERAVAAVMKSARKLAGTDDVPVDRLRAGEVSTSE---LAELLSPSLFSDE 66 Query: 84 KIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138 +++++E+ + + V ++++ S + L+K+ + Sbjct: 67 RVVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCA 126 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ D + + ++ + +L +G D +L Sbjct: 127 KIA----KAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLV--ADTA 180 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + +I + + G + A + + S P L Sbjct: 181 GEVTAVAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALA--- 237 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + I + S + + K Q+ R W++ V E + + Sbjct: 238 EAVHTIARVAPLSGDPYRLAGELGMPPWRVQKA---QKQARRWSRASVAEAMRLVAA 291 >gi|213966181|ref|ZP_03394367.1| DNA polymerase III, delta subunit [Corynebacterium amycolatum SK46] gi|213951196|gb|EEB62592.1| DNA polymerase III, delta subunit [Corynebacterium amycolatum SK46] Length = 352 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 108/343 (31%), Gaps = 23/343 (6%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELIN----QFKKNISITYHDPF-SLVVLNALEIQKNIST 69 L V + G ++ L+ + + + T DP V + + + Sbjct: 22 SGLSAVAPVNLIVGKEE-LLKDRARLAIVAAVRAQAATESDPGGRSVPVTTIRAGDMTTV 80 Query: 70 FWNEINSTSLFSKKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124 E+ S SLF +I+++ + K+ L + + +I+ + + K Sbjct: 81 DAVELFSPSLFGDDRIVVVTDCQDAGKEPAKLLMDSVKDPAPGITLILLHSGEGRQKKMV 140 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 LRK+ +F + + L + E + ++ +L +G D Sbjct: 141 ADLRKLGVRFFEAQPL-----KRNDLPGFVGEEFASHGVKVRRDVIDTVLDAVGSDLREL 195 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 + +L +T + V+ + + EI ++G+ A+ L Sbjct: 196 ATAISQLC--ADTAGKVTSEAVRTYYGASAEVSGFEIAELALRGRGGEALAKMRRALQLG 253 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 M L + ++H + + + + K L + Sbjct: 254 MAPALLSAAITGMVGDVARLHGARGVN--ARRDAHRYGMPPWKLEKTQRLASAWSTPAVA 311 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 ++D A L + Q++L IA+ A ++ Sbjct: 312 RAVVVAAQLDADTKGASSTPELS---LEQSVLRIAELAHSSHR 351 >gi|313680342|ref|YP_004058081.1| DNA polymerase III subunit delta [Oceanithermus profundus DSM 14977] gi|313153057|gb|ADR36908.1| DNA polymerase III, delta subunit [Oceanithermus profundus DSM 14977] Length = 294 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%) Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 + A L L D A EL+KL+ D +T + VK ++ L ++++A Sbjct: 126 APAAVAHYLGELEADLEAIHAELEKLALL---DGPLTLERVKAVVALDPPLSSFDLVDAA 182 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 G+ A+ L L +L + F + + +++ + + Sbjct: 183 AAGRFERAMKLLRGLLDRGEEPLRILGALSKHFTRTAVLWAELQRRHLTEKDAAALLK-- 240 Query: 286 IIPMKRNILQESLRIWNKNLVRETLH 311 + P L R ++ + L Sbjct: 241 LHPFAAKKLLAFARRIDEARLLRALD 266 >gi|313123472|ref|YP_004033731.1| DNA polymerase iii, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280035|gb|ADQ60754.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684381|gb|EGD26550.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 329 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 26/276 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73 N + + G D L L + + + + F + ++ + + Sbjct: 9 PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62 Query: 74 INSTSLFSKKKIILIENLS--------TEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122 + SLFS++K++L++N K+ D L EI I + I+++ S E + Sbjct: 63 LAEASLFSQQKLVLVKNPIFLTGKFPVKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K EK + + A+ Y +++ + + A +L+ Sbjct: 123 RRKKLTKQVEKSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 A+ KL + + I+ V I + + I+ A ++G AI D Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 L L+ F + + L + ++ + E Sbjct: 237 LREGTYPLQLVAVFFSQVEFLLCVKVMGQRRRSESE 272 >gi|108800477|ref|YP_640674.1| hypothetical protein Mmcs_3511 [Mycobacterium sp. MCS] gi|119869615|ref|YP_939567.1| hypothetical protein Mkms_3583 [Mycobacterium sp. KMS] gi|108770896|gb|ABG09618.1| DNA polymerase III, delta subunit [Mycobacterium sp. MCS] gi|119695704|gb|ABL92777.1| DNA polymerase III, delta subunit [Mycobacterium sp. KMS] Length = 320 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 95/297 (31%), Gaps = 21/297 (7%) Query: 25 IFYGSDKGLI-FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + G ++ L+ + K + D + L A E+ + E+ S SLFS + Sbjct: 10 LVLGDEELLVERAVAAVLKSARKLAGTDDVPVDRLRAGEVSTSE---LAELLSPSLFSDE 66 Query: 84 KIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138 +++++E+ + + V ++++ S + L+K+ + Sbjct: 67 RVVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCA 126 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+ D + + ++ + +L +G D +L Sbjct: 127 KIA----KAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLV--ADTA 180 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 +T V+ + +I + + G + A + + S P L Sbjct: 181 GEVTAVAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALA--- 237 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + I + S + + K Q+ R W++ V E + + Sbjct: 238 EAVHTIARVAPLSGDPYRLAGELGMPPWRVQKA---QKQARRWSRASVAEAMRLVAA 291 >gi|189218832|ref|YP_001939473.1| DNA polymerase III, delta subunit [Methylacidiphilum infernorum V4] gi|189185690|gb|ACD82875.1| DNA polymerase III, delta subunit [Methylacidiphilum infernorum V4] Length = 376 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 26/303 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW----NEINST 77 VFIF G D + F + + + + E N EI + Sbjct: 10 RVFIFGGEDFYEAQKKALAFVEKCKQQNPSIEIVSLADEPETASNSLVLLRHLKEEILTP 69 Query: 78 SLFSKKKIILIENL-----------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 LF K++ +N + E++V + + + I++I + I K Sbjct: 70 PLFEDLKLLFWKNARFLAVGGLAEKTIEQEVGEIFKILRESPPDYLIVVILAESIDKRKK 129 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE---AKQILLANLGGDRIA 183 L + K L ++ D ++E + +K I + A Q+L+ + G R Sbjct: 130 LFQEL-KSNFQLELTDKLDPSDS-SSIMEVMNKLEEKGIEGDVNLALQLLIES-GSQRSL 186 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E++KLS Y I E+ + D+ C I + + K A + + L Sbjct: 187 LDMEMEKLSIYLGGKGKIDEKALSDLFCGRRETVIWRFCDLVMAAKFDLAFVELQYLLQE 246 Query: 244 KMPSHALLHGFLQKFQ-----LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 ++ Q+ LL + + + TE+ + E + Sbjct: 247 GGSEIGIILALAQRIFWACLGLLLIEKGLLQFQAKGKYSKLHITEEGYFFYPKKKTGEEV 306 Query: 299 RIW 301 W Sbjct: 307 NQW 309 >gi|83319994|ref|YP_424721.1| hypothetical protein MCAP_0772 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283880|gb|ABC01812.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 316 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 22/241 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ FY D L+ NQ KK I D + + L+ I+ + +T ++ + + + FS Sbjct: 1 MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55 Query: 82 KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 K II+I + + L+ LE ++ N++II + SN+ K + K Sbjct: 56 SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNVIIFTLNSNKFSKKLKIAKY 115 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +V + D K + +I+ L K I + L D NE+ K Sbjct: 116 IESNFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLANQIYNLLPNDLQIITNEINK 173 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ + +K + H I ++++A I I N I L ++ L Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDNFIKLYHDYILLNDDIIGL 230 Query: 251 L 251 + Sbjct: 231 I 231 >gi|327468968|gb|EGF14440.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK330] Length = 348 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G L Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y E I + + + I T I ++ +Q KI A L L Sbjct: 191 LKGYK-ESGQIDLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306 + L +F++ ++ ++ E + + +I+ + + P + + R + + Sbjct: 250 IAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLAFL 308 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 ++T+ + + + Y + + +L IA Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|115376606|ref|ZP_01463837.1| DNA polymerase III, delta subunit superfamily [Stigmatella aurantiaca DW4/3-1] gi|115366411|gb|EAU65415.1| DNA polymerase III, delta subunit superfamily [Stigmatella aurantiaca DW4/3-1] Length = 410 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 15/240 (6%) Query: 89 ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-----TSVLAISCY 143 + E LE + H +++ ++++ + L K A+ V A Sbjct: 140 RVSAPEGDASALLELLQKGLPKGHALVLAASDVDAKSALLKFAKDEGWFIERKVAA---- 195 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + L ++ E L +K + A + L +GG+ ++EL+KL+ Y I Sbjct: 196 RHKDLDLSEIAREFLAPFKKKLGAGALEQLKERVGGNIRLLQSELEKLAIYANG-ATIEA 254 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 V ++ E+ + + + A+ A+ + + LL + L + Sbjct: 255 ADVALLVHHAREEEFFELSESIQKRDLRGALDYAEDAMGQGTHALQLLGAVASIIRGLLE 314 Query: 264 IH-----IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + SF+ + I + + W L + + + R Sbjct: 315 NRERLGLYAQGAVPRSFDDFKARLFPKIEQEAKAAKGRAPHPWAAFLSMQAAARYERREL 374 >gi|313885823|ref|ZP_07819566.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924727|gb|EFR35493.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 349 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 32/279 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + YG + I L +N LVV E + + S+F+ Sbjct: 19 PLVLGYGEESYYINRLEELVVENYIPQEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++I++ + KK ++ K +I + + TL + A Sbjct: 77 PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129 Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183 N L + + L ++ +A L+ +G D Sbjct: 130 --KKNAQALKSQVVLIESTPVRRDNELREAMVQMAEGLGLQLAPQAISTLIERVGYDLET 187 Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241 +ELQKL+ LI+ V+ ++ + +++NA + K A+ +A Sbjct: 188 LYSELQKLAIPAKGAGGLISRAMVQQVVSKSRKYGPYDLLNAVQRRKDDEALQIALAMAE 247 Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 + P ++ F L H + S + ++ + Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286 >gi|221194646|ref|ZP_03567703.1| DNA polymerase III, delta subunit [Atopobium rimae ATCC 49626] gi|221185550|gb|EEE17940.1| DNA polymerase III, delta subunit [Atopobium rimae ATCC 49626] Length = 320 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 75/220 (34%), Gaps = 5/220 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ G D+ +++ + KK ++ F+L + +I + + + + Sbjct: 7 PAYLAVGPDELKRNKMVERLKKRLNE-LFSAFNLDEFTGSTV--DIDVLVSALQTMPMGD 63 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 ++I+++ K + + + +++ + + + L K K + Sbjct: 64 SRRIVILREADKLSKAASEVVILYLENPNPTTTLLLTAQTLARTTRLYKAVAKIGEKSVV 123 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 C L +++ I A Q L+ +G +++ L++ Sbjct: 124 LCASMKPRELAPYVQKLAASYGLVIDFSAAQELVDRVGDSTTMLDAQVKTLAALSDGQP- 182 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 IT V+ I + +++ + ++ L + Sbjct: 183 ITTSFVEQHIARVAEVKPWTFLDSLSARNLRRSLELYEIL 222 >gi|154174195|ref|YP_001407997.1| DNA polymerase III subunit delta [Campylobacter curvus 525.92] gi|112803307|gb|EAU00651.1| DNA polymerase III, delta subunit superfamily [Campylobacter curvus 525.92] Length = 332 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 111/318 (34%), Gaps = 30/318 (9%) Query: 21 HFVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 F+ +G+D+ I E++N + + + F + + + I+ Sbjct: 16 RNYFLLFGADEYQIELYGKEILNLYCTSDANVLSVYFD---------EYDFARTKAHISE 66 Query: 77 TSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAEK 133 SLF K ++ I+ + K L L K+ N + ++ ++K +KI E Sbjct: 67 PSLFGGKNVLHIKSDKRIPGKELKELVAACQKDANNCFLFEFYEA-DMKLALEAQKIFEP 125 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + PD + L+ +I+K A L + + +EL KL+S Sbjct: 126 NFARFFKPSSPDEA---VMLLSRQAGKIALNITKNALYELYFIHNENLYLAASELNKLAS 182 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINA-TIQGKIYNAIMLADFFLASKMPSHALLH 252 DI I + V+ ++ + ++ N I + + LL+ Sbjct: 183 L---DIHIEQDDVRRLVFGLGAVNFDDFFNKFISLKDIRGDFFAYEQDPSFNE--ILLLN 237 Query: 253 GFLQKFQLLEKIHIIKECSNI-SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + F L K+H+ + + + I I N+L+ N R+ Sbjct: 238 SLYKAFFRLFKLHLYIKINGKFDVKDAIGYAPPPNI---ANMLKTQSLSLNLKAYRQIFT 294 Query: 312 KIDHRIHLARKKKYLEKN 329 ++ + ++KN Sbjct: 295 ALNLAELELKTNPKIDKN 312 >gi|55822688|ref|YP_141129.1| DNA polymerase III subunit delta [Streptococcus thermophilus CNRZ1066] gi|55738673|gb|AAV62314.1| DNA polymerase III delta subunit [Streptococcus thermophilus CNRZ1066] Length = 344 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77 + + G D G + +F K I D F + + + + + + S Sbjct: 17 KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69 Query: 78 SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127 F+ +K+++ ++ + ++K L LE + + +++ + ++ L Sbjct: 70 PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 K+ ++ VL + D + L ++ + K + LL D + Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLAFDKGVFEELLVKSSFDFSDIQKN 187 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L L Y + I+ Q + + I + I ++ ++G+I + L Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F+ ++ ++ S ++I+ + + P + R + Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ T+ + + + + ++ +L IA + Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344 >gi|195953203|ref|YP_002121493.1| DNA polymerase III delta [Hydrogenobaculum sp. Y04AAS1] gi|195932815|gb|ACG57515.1| DNA polymerase III delta [Hydrogenobaculum sp. Y04AAS1] Length = 323 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 21/310 (6%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 ++I+K L+H V YG D I K+ A E+ + Sbjct: 6 EYIKKDNSLDNLTHTVV--YGKDIYFIQYFEQLIKQKYDTKT--------YWADEL--DY 53 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK-KNNT 126 N I S ++F+KK +I+I+N + L IK N II + ++ K+ Sbjct: 54 ENLRNIITSRNIFNKKIVIIIKNFTELLNKLKKENLDFIKKTQNIIIFEEYEDLTEKDIK 113 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +I ++L +L LI++ ++++ LL +G D + +N Sbjct: 114 AVQIILGDINILT--SKQKKPDYLKSLIQKKFKKEGIDLNQDIINELLDTIGTDSLNLKN 171 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 E KL + + IT + + + I++A I+ I A+ + + Sbjct: 172 ETDKLLVLA-KSVPITRETLSRALVKEPKDEAFSIVDALIKQDIKKALSIFYDNIKLGQH 230 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 L ++F + N+SF+++ + + P ++NIL + L I NK+ + Sbjct: 231 PLVTLGFMQKQF----INMYLAFKMNVSFDEVCKILNIS-HPFQKNILSKQLSIVNKDKL 285 Query: 307 RETLHKIDHR 316 + + Sbjct: 286 FSIVKALQRA 295 >gi|326407120|gb|ADZ64191.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis CV56] Length = 334 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + + +G + L+ EL NQ ++ D S + +++ ++ S FS Sbjct: 18 ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74 Query: 83 KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132 +++++ENL + +K VLD E + +++I ++ + K + Sbjct: 75 SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189 ++L L + L+ IS ++ A + + + Sbjct: 135 AKATLL-------EAQELKS---QELIQYFSRISPLPKVVLSLIAAKSNDNFSVMKQNID 184 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 + +Y L +T V+ ++ + I + + +GKI A L Sbjct: 185 LVQTYVLG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 +L ++L ++ + + + + + + P + + +R N ++ Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300 Query: 310 LHKI 313 L + Sbjct: 301 LSDL 304 >gi|170782130|ref|YP_001710463.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156699|emb|CAQ01858.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 342 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 108/304 (35%), Gaps = 19/304 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + G++ L+ + + ++I + + A + S SLF++ Sbjct: 30 VVLVSGTEA-LLADRAMRRLRDILTAEDPRIEVSDIEADSYA--PGELIT-LASPSLFAE 85 Query: 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLAI 140 ++I + N+ + L + + N ++++ + ++ L + + + Sbjct: 86 PRLIRVVNVEKCSDQFLLDAVAYLEQPADNTYVVLRHAGGVRGKKLLDAVRSGQGGGIEV 145 Query: 141 SCYP---DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D++ H D ++SI+ A + L+A D + Q+L Sbjct: 146 VCAELKKDSEKH--DFAVAEFRAAKRSITPGAVRQLVAAFQDDVSELASACQQLI--SDT 201 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE V + + ++ I G+ A++L L S L+ F Sbjct: 202 AHEITEVTVDQYYGGRVEINAFAVADSAIAGRSGEALVLLRHALTSGADPVPLIAAFA-- 259 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 KI + + S +S ++ + P + + + L++W+ + + + Sbjct: 260 ----MKIRTMAKVSGVSGASGQLASKLGMAPWQVDRARRDLQLWDDAGLGRAVEALAEAD 315 Query: 318 HLAR 321 + Sbjct: 316 AQVK 319 >gi|325688280|gb|EGD30299.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK72] Length = 348 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 133 LKRDGKIFETA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ ++ E + + +I+ + + P + + R + Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 +++T+ + + + Y + + +L IA Sbjct: 306 AFLKKTMTCLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|323352678|ref|ZP_08087648.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis VMC66] gi|322121714|gb|EFX93460.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis VMC66] Length = 348 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G L Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y E I + + + I T I ++ ++ KI A L L Sbjct: 191 LKGYK-ESGQIGLEDIAEAIPKTLQDNIFDLTQLILRQKIDEARSLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306 + L +F++ ++ I+ E + + +I+ + + P + + R + + Sbjct: 250 IAIMLGQFRIFTQVKILAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLTFL 308 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 ++T+ + + + Y + + +L IA Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|289644668|ref|ZP_06476731.1| DNA polymerase III, delta subunit [Frankia symbiont of Datisca glomerata] gi|289505514|gb|EFD26550.1| DNA polymerase III, delta subunit [Frankia symbiont of Datisca glomerata] Length = 331 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/316 (12%), Positives = 106/316 (33%), Gaps = 22/316 (6%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71 S + + G ++ L+ + HDP + + + Sbjct: 3 ASVPPTSAPPRLVLVSGDEELLVSRAVRDVIHAA--RRHDP--QTEIVDRAPGEFTESDV 58 Query: 72 NEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130 ++ S S+F + +++++ + + L + + + + ++++ + + +N L + Sbjct: 59 VDLASVSMFGELRVVVVRGAQELTDDLREALLAYLARPLDDVVLVVVHSGVVRNRKLAEA 118 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + + + + D + + IS A + L+ +G D L++ Sbjct: 119 MKSAGATVVTAARITRPRDRHDFVAAEVRRLGGQISAGAVKALVDAVGSD-------LRE 171 Query: 191 LSSYCLE-----DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L+ C + I E V + +A I G + A+ + LA + Sbjct: 172 LAMVCDQMVADSGGTINEALVAGYRRGRAEATGFAVADAAIAGDLPEALTVLRQTLAGGV 231 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 P ++ + L + + S ++ + ++R+ Q + R W+ Sbjct: 232 PPVLVVSAMTTGLRDLAR---VAAAGGGSTWELARSLGMPDWKVERS--QRAARGWSDEG 286 Query: 306 VRETLHKIDHRIHLAR 321 + + + + Sbjct: 287 LAYAMRAVSAADAAVK 302 >gi|227893370|ref|ZP_04011175.1| possible DNA-directed DNA polymerase III delta subunit [Lactobacillus ultunensis DSM 16047] gi|227864785|gb|EEJ72206.1| possible DNA-directed DNA polymerase III delta subunit [Lactobacillus ultunensis DSM 16047] Length = 328 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 115/309 (37%), Gaps = 30/309 (9%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73 KN + + + D L L + + F + ++ + + + Sbjct: 8 KNTNNDNPHTLIWSEDDFLNDYLAKSYAH------EEQFKDLEHVIVDCESDGLDELIAS 61 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122 + +SLFS++K+I+++N KK + ++ + + + ++I+ S + I Sbjct: 62 LTESSLFSEQKLIMVKNPFFLTAKVPKKFQKQVNDLQKIFENLQELEDVVVIVASYDKID 121 Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 + L K K +V+ I Y + + + + +I++ A Q+L+ Sbjct: 122 RRKKLTKTVLKEFNVVEPKIRSYE-----VGAITKAIIKDEGYTITQSALQLLIERSDQV 176 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + QKL D ITE+ V + + I I+ + + AI + Sbjct: 177 MDTILSNYQKLKM-AAPDNKITERSVMQNVDLSLAQNIFAILESALSKNYQEAIDRLNNQ 235 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299 L LL F + +L+ + I+ S +I+++ + P + + L+ L Sbjct: 236 LREGTSPIQLLAVFENQLELILVVKILA-KRGRSEPQIVKELG--VHPYRVKLALKNRLA 292 Query: 300 IWNKNLVRE 308 I + Sbjct: 293 IGKLEQLLR 301 >gi|325694054|gb|EGD35972.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK150] Length = 348 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFESYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + + A LL G +E+ K Sbjct: 133 LKRDGKIFEAA--ELKEADLRTYFSKEAQVEGLQFTPAAFDQLLLKSG----FQFSEISK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ + +F++ ++ ++ E + + +I+ + + P + + R + Sbjct: 247 IKLIAIMMGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 +++T+ + + Y + + +L IA Sbjct: 306 AFLKKTMACLIETDFQIKSGLYDKDYLFDLALLKIA 341 >gi|260887219|ref|ZP_05898482.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC 35185] gi|260863281|gb|EEX77781.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC 35185] Length = 374 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 37/324 (11%), Positives = 103/324 (31%), Gaps = 40/324 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + I + + + + A ++ + + + F Sbjct: 38 VYLLAGEEHYYIEKAKAAILERLFPAGEGLRDALEEAAPDMDADA--LIGLLETVPFFVP 95 Query: 83 KKIILIENLS--TEKKVLDC---------------------LEEIIIKNICNHIII-IKS 118 K ++L+++ EKK L ++ +I + + Sbjct: 96 KHVVLVQDSPLFREKKRPAADGEEAKAAKGKKGDADKKEERLLHLLADMPDYAYVIFLCA 155 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLAN 176 + K K E +VL D + D + L + +EA + Sbjct: 156 GKADKRRKAYKTVEAAGAVLD----ADAVRPWEIGDWLAGKLAEIHREFDREAHAYFMGA 211 Query: 177 LGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + S + E +KL+ Y + I + + + +++A + + Sbjct: 212 VSMMHEVSLSYLDKEFEKLALYT-AEKRIGRAELAAVFSGLPEVSSFAMMDAVSEKDVKK 270 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ L A + + LL ++ + L + ++ + + + + N ++ Sbjct: 271 ALTLLRRQTADGVYAPVLLALMVRHVRQLWQAKLLL-AQGVRGKALGPSMKLNPFIAEK- 328 Query: 293 ILQESLRIWNKNLVRETLHKIDHR 316 L + +++ +++ + + Sbjct: 329 -LGRASMKFSEPVLKRAMLSLIDA 351 >gi|125623622|ref|YP_001032105.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. cremoris MG1363] gi|124492430|emb|CAL97372.1| putative DNA polymerase III, delta subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300070388|gb|ADJ59788.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. cremoris NZ9000] Length = 334 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 114/325 (35%), Gaps = 27/325 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSLFS 81 + + +G K ++ EL +Q ++ D + + ++ N S E + S FS Sbjct: 18 ILVIFGESKEMVQELKSQLLTFVNFEPTD----LSQSYYDLTPNNSDLALEDLESLPFFS 73 Query: 82 KKKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIA 131 +++++ENL + +K +LD E + ++++ ++ + K Sbjct: 74 DSRLVILENLVNLTTAKKTILDEKQLKRFENFLDNPSETTQLVLVLYGKLDSRLKVVKKL 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + ++L L + S+ + ++ A + + + Sbjct: 134 KAKATLL-------EAQELKTQELIQYFSHETSLPRPVLSLIAAKSNDSFSVVKQNIDLV 186 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 +Y L +T V+ ++ + I + + +GKI A L +L Sbjct: 187 QTYALG-REVTVDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIKIL 245 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++L ++ + +E +++ N L L++ + L Sbjct: 246 AILTNSYRLYLQVKLFQEKGWQENQQVSYLKMHPYPVKLANQLVRRLQVSSLKKGLADLI 305 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 ++D I K EK +F +L Sbjct: 306 QLDFAI----KTSAAEKAYLFDILL 326 >gi|324990607|gb|EGC22543.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK353] Length = 348 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 96/275 (34%), Gaps = 31/275 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++ +L+T KK L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTSKKRYLTDEELKSFENYLENPADTTCLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F++ ++ I+ E + + +I+ Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280 >gi|332362763|gb|EGJ40559.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK49] Length = 348 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 31/275 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPSDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F++ ++ ++ E + + +I+ Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDL 280 >gi|228476848|ref|ZP_04061493.1| DNA polymerase III, delta subunit [Streptococcus salivarius SK126] gi|228251422|gb|EEK10567.1| DNA polymerase III, delta subunit [Streptococcus salivarius SK126] Length = 344 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 97/274 (35%), Gaps = 25/274 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + +F K I D F + + + + + + S Sbjct: 18 ITVLAGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70 Query: 79 LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLR 128 F+ +K+++ ++ + +K LD LE + ++++ + ++ L Sbjct: 71 FFADEKVVIFDHFTDMTTAKKSYLDEKELKRLENYFESPVETTRLVLMSAGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ VL S D L ++ + + LL D + L Sbjct: 131 KLLKRDAMVLEASPLKD--AELRTYFQKQAHQEGLTFDTGVFEELLIKSNFDFSDVQKNL 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L Y + I+ Q + + I + I ++ ++G+I + L Sbjct: 189 AFLKGYK-TEGNISSQDIAEAIPKSLQDNIFDMTQLLLRGQIQSVRELVHDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+ ++ ++ S ++I+ Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSL 280 >gi|172041037|ref|YP_001800751.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM 7109] gi|171852341|emb|CAQ05317.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM 7109] Length = 334 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 102/311 (32%), Gaps = 21/311 (6%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70 ++++K V + G+++ L +P V L+ Sbjct: 9 EQASKKPPAISAVNMIVGAEEFLAERQRFAIVHAARKNAGNPDLPVELHKATNLSEPQ-- 66 Query: 71 WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 E+ S SLF++ +I++I ++ K+ + L+ I ++I+ + K R Sbjct: 67 LIELLSPSLFAEDRIVVISGVADCGKETVALLKSAIESPADGVVLILLHS--GKGRNKRL 124 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + E + I P +E+ S+ E +L ++G D + + Sbjct: 125 VNEWQKLGVRIFPAEPLRPRERRSFVEQEFRSYGVSVGPEVVDRMLDSVGSDLRELASAV 184 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +L D +T V+ + +I + + G+ A+ A + +P Sbjct: 185 SQLV--ADTDANVTPDAVQRYYQGQAEVTGFDIADLVLAGRQGEAVAAARRAIQLGVPLV 242 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN-ILQESL---RIWNKN 304 + +++ + ++ I L+++L R W Sbjct: 243 LIASALST---------AMRDVARVAGAGRIDPRRDASAFGMAPWKLEKTLRVARQWPPA 293 Query: 305 LVRETLHKIDH 315 V + + Sbjct: 294 AVSRGVQLVAQ 304 >gi|125717571|ref|YP_001034704.1| DNA polymerase III subunit delta [Streptococcus sanguinis SK36] gi|125497488|gb|ABN44154.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 348 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 31/275 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F++ ++ I+ E + + +I+ Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280 >gi|317471376|ref|ZP_07930730.1| hypothetical protein HMPREF1011_01078 [Anaerostipes sp. 3_2_56FAA] gi|316901127|gb|EFV23087.1| hypothetical protein HMPREF1011_01078 [Anaerostipes sp. 3_2_56FAA] Length = 153 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 13/146 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77 +++FYG +K L+ + ++ K+ + + F + EI I + Sbjct: 16 NLYLFYGKEKYLVAQTRDKLKEALIPSGDTMNYSYFEGKKTDIPEI-------LELIQTM 68 Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 F+ ++++++ KK D + + I++I +++ K + + K K Sbjct: 69 PFFNDYRLLVLDQTELGKKSNDDFLNALKEMPETTILLIIEDDVDKRSKIYKYINKEGCA 128 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQK 163 ++ + L+ + + L QK Sbjct: 129 VSFE--TPKEKDLVLWVAQMLKKEQK 152 >gi|269956995|ref|YP_003326784.1| DNA polymerase III subunit delta [Xylanimonas cellulosilytica DSM 15894] gi|269305676|gb|ACZ31226.1| DNA polymerase III, delta subunit [Xylanimonas cellulosilytica DSM 15894] Length = 339 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 106/327 (32%), Gaps = 18/327 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G ++ L+ E ++ V L+ S SLF Sbjct: 28 PVVLVRGPEE-LLRERAVDGLVALARERDPETEKVELDGTTY--GPGQLQV-AASPSLFG 83 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + KI+++ + T++ D L + + ++++ + + L + + Sbjct: 84 EAKIVVVTAADAGTDELYADLLAHVERPDPETAVVVVHGSGQRGKKMLDAVV--ASGAPI 141 Query: 140 ISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + C + + L ++ EA + L+ LG D + +L Sbjct: 142 LQCDAITRDADKAEFVARELRTARRRAEPEAVRALIDALGTDLRELAAVVSQLL--ADTS 199 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 I+ V ++ +A + G A+ L LA+ ++ + Sbjct: 200 GTISVGVVDRYYGGRVEATGFKVADAAVAGDAGAAVALLRHALATGADPVPMVAALAMRL 259 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 + L K+ ++ + E +Q RN Q L+ W + + + Sbjct: 260 RTLAKVAALRGGMVTARELGLQD------WQVRNA-QRDLQRWTPESLATAISAVASADA 312 Query: 319 LARKKKYLEKNIIFQTILYIAQTACKN 345 + + + +L IA+++ + Sbjct: 313 EVKGAGRDPVFAVEKAVLTIARSSTRR 339 >gi|157150921|ref|YP_001450878.1| DNA polymerase III subunit delta [Streptococcus gordonii str. Challis substr. CH1] gi|157075715|gb|ABV10398.1| DNA polymerase III, delta chain [Streptococcus gordonii str. Challis substr. CH1] Length = 345 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 94/280 (33%), Gaps = 35/280 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77 + + G D G L Q K I D F + + +++ + + S Sbjct: 17 PLTLLTGDDLGQFELLKEQLLKQIEFNAADLNYALFDMKEADYQQVELD-------LVSL 69 Query: 78 SLFSKKKIILI-----------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNN 125 FS +KII++ NLS ++ L E + + +II + ++ Sbjct: 70 PFFSDEKIIILDHFIDITTAKKRNLSDDE--LKSFEAYLEHPVETTKLIIFAEGKLDSKR 127 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + K+ ++ + + L + + LL G Sbjct: 128 RIVKLLKRDAEI--FEASEPKEQDLKSYFSKVAQAENLQFAPTVFDQLLIKSG----FQF 181 Query: 186 NELQKLSSYCLE---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 +E+ K S+ D I + V + I T I ++ ++ ++ A L Sbjct: 182 SEISKNLSFLKGYKPDGQIELEDVTEAIPKTLQDNIFDLTQLILKQRVDEARSLVSDLRL 241 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F++ ++ I+ E + + +I+ Sbjct: 242 QGEDEIKLIAIMLGQFRIFTQVKILSE-NGRAESQIVSDL 280 >gi|23466010|ref|NP_696613.1| hypothetical protein BL1454 [Bifidobacterium longum NCC2705] gi|23326729|gb|AAN25249.1| hypothetical protein with possible DNA binding function [Bifidobacterium longum NCC2705] Length = 291 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 95/284 (33%), Gaps = 18/284 (6%) Query: 47 ITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI- 104 + L+ L+A + ++E S SL S ++ + NL ++K+ + L Sbjct: 1 MKARPDAELIELDATSADQYA---FDEAVSPSLLSDVAVVKLVNLQNADEKLAEALVTYT 57 Query: 105 --IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 K+ ++I +K + ++ + + L ++ E Sbjct: 58 KQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDLKKPDAQLNFVLGE-FEK 116 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + + A Q L++ LGG ++L + +D + V + + Sbjct: 117 RGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPMGLDCVNQYLTANPQVTGFA 175 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + + ++GK AI++ + AL+ K+ I + S + I Q Sbjct: 176 VADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------MKLRTIAKASAVRAGTISQ 229 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 K + +N + L W + + + ++ Sbjct: 230 AEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSKTNG 272 >gi|313665658|ref|YP_004047529.1| DNA polymerase III, delta subunit [Mycoplasma leachii PG50] gi|312949414|gb|ADR24010.1| putative DNA polymerase III, delta subunit [Mycoplasma leachii PG50] Length = 316 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 22/241 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ FY D L+ NQ KK I D + + L+ I+ + +T ++ + + + FS Sbjct: 1 MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55 Query: 82 KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 K II+I + + L+ LE ++ N+III + SN+ K + K Sbjct: 56 SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 115 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +V + D K + +I L K I + L D NE+ K Sbjct: 116 IESSFNVKYL-SLWDEKQTIKYIIN-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 173 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ + +K + H I ++++A I I I ++ L Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKFYHDYILLNDDIIGL 230 Query: 251 L 251 + Sbjct: 231 I 231 >gi|323699097|ref|ZP_08111009.1| DNA polymerase III delta [Desulfovibrio sp. ND132] gi|323459029|gb|EGB14894.1| DNA polymerase III delta [Desulfovibrio desulfuricans ND132] Length = 331 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 105/313 (33%), Gaps = 29/313 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++F+ D LI Q + + + D ++L + + TFW ++ SLF Sbjct: 6 RYLFLIC-PDPQLIK---GQIDERLKQSGQDGWALKPFWGDDDEPLPPTFWTDLTIKSLF 61 Query: 81 SKKKIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKSNEIKKNNTL------RKIA 131 + K +++ K D L+ + + I ++ K + R + Sbjct: 62 PQPKALIVRRAHALKADQWDKLDASVRGVGDDVYPIFCLEGEWKAKKAPIPPALSRRNLY 121 Query: 132 EKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 +K + ++ L D ++ + A Q L L D +A+R EL K Sbjct: 122 KKARDAGWVWESAGLDQRSLTDFVKAWAAKAGLTFEPGAGQALTMALPTDAVAARLELDK 181 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA--SKMPSH 248 + +D ++ ++HV ++ T + ++++A G+ + L K Sbjct: 182 MELAAGDDRIVRKEHV-SLVAPTGEMPFFDLMDA--LGRPGAEASVWKRVLDDHDKSAKD 238 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L + +++ + + + K+ + + L + Sbjct: 239 QMLFNLIGFLASQARMYWLLAHGGKAAGS-------PFMLQKKAPVAKRL---GARGIAR 288 Query: 309 TLHKIDHRIHLAR 321 + + Sbjct: 289 MIDLAMEAELSLK 301 >gi|119358076|ref|YP_912720.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides DSM 266] gi|119355425|gb|ABL66296.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides DSM 266] Length = 357 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 24/237 (10%) Query: 11 QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNIST 69 +K ++ V+ G+++ L EL + + + + D + ++L E+ + Sbjct: 6 EKKNRDDGEIAPVYFLTGTEEYLKEELTGRIRNTLFPSREDAACNTIILYGPELT--LGD 63 Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEE---------IIIKNICNHIIIIKSNE 120 + + +F++KK+I++ KK ++ ++ ++++ + + Sbjct: 64 LVSRASEYPMFTEKKLIIVRQFEKIKKTASKEQQKLHEEKYNSYLLNPADFTVLVLDAGQ 123 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD---LIEESLLIGQKSISKEAKQILLANL 177 I K K +K L + Y + + + +A + A + Sbjct: 124 IDK-----KDLDKSPF-LQLKKYRKDFPAIKTPDLFASDRAKASGWEFEPDALKAFTAYI 177 Query: 178 GGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +E+QK+ Y + IT V + + + I E+ A + Sbjct: 178 QPSAREICHEIQKMILYASDQRQGNKITALDVYECVGISRTYNIFELEKALATKNMR 234 >gi|116512516|ref|YP_811423.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. cremoris SK11] gi|116108170|gb|ABJ73310.1| DNA polymerase III, delta subunit [Lactococcus lactis subsp. cremoris SK11] Length = 334 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 47/325 (14%), Positives = 114/325 (35%), Gaps = 27/325 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSLFS 81 + + +G K ++ EL +Q ++ D + + ++ N S E + S FS Sbjct: 18 ILVIFGESKEMVQELKSQLLTFVNFEPTD----LSQSYYDLTPNNSDLALEDLESLPFFS 73 Query: 82 KKKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIA 131 +++++ENL + +K +LD E + ++++ ++ + K Sbjct: 74 DSRLVILENLVNLTTAKKTILDEKQLKRFENFLDNPSETTQLVLVLYGKLDSRLKVVKKL 133 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + ++L L + S+ + ++ A + + + Sbjct: 134 KAKATLL-------EAQELKTQELIQYFSHETSLPRPVLSLIAAKSNDSFSVVKQNIDLV 186 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 +Y L +T V+ ++ + I + + +GKI A L +L Sbjct: 187 QTYALG-REVTVDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIKIL 245 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 ++L ++ + +E +++ N L L++ + L Sbjct: 246 AILTNSYRLYLQVKLFQEKGWQENQQVSYLKMHPYPVKLANQLVRRLQVSSLKKGLADLI 305 Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336 ++D I K +K +F +L Sbjct: 306 QLDFAI----KTSAADKAYLFDILL 326 >gi|329116654|ref|ZP_08245371.1| DNA polymerase III, delta subunit [Streptococcus parauberis NCFD 2020] gi|326907059|gb|EGE53973.1| DNA polymerase III, delta subunit [Streptococcus parauberis NCFD 2020] Length = 342 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 35/276 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + I G D G ++ + + I+ D F L + + + + + S Sbjct: 18 ITIVTGEDLGQFSQIKSVLMEKIAYDKDDLTYSYFDLSETDYQDAELD-------LLSLP 70 Query: 79 LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ ++ + +K L E + K + + +II + ++ + Sbjct: 71 FFADQKVVIFDHFLDLTTAKKNYLKENELKSFESYLEKPMDSTRLIIFAPGKLDGKRRIV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIA 183 K+ ++ V+ L + ++ S + LL D Sbjct: 131 KLLKRDAQVI-------EATQLKEAESKTYFQKYSHHLGLSYDSGVFERLLLKSNDDFSQ 183 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + L SY + IT V + I + I ++ +Q K+ +AI L + Sbjct: 184 ILKNINFLKSYK-NEGRITLYDVDEAIPKSLQDNIFDLTRFLLQKKVEDAINLVHDLRLT 242 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 L+ L +F+L +I I+K + ++I+ Sbjct: 243 GEDEIKLIAIMLGQFRLFLQIAILK-GQGKNEQQIV 277 >gi|327473338|gb|EGF18758.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK408] Length = 348 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 114/336 (33%), Gaps = 35/336 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + L + + A LL G +E+ K Sbjct: 133 LKRDGKI--FEATELKEADLRAYFSKEAQAEGLQFAPAAFDQLLLKSG----FQFSEISK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ ++ E + + +I+ + + P + + R + Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 +++T+ + + Y + + +L IA Sbjct: 306 AFLKKTMACLIETDFQIKSGLYDKDYLFDLALLKIA 341 >gi|301300787|ref|ZP_07206971.1| DNA polymerase III, delta subunit domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851637|gb|EFK79337.1| DNA polymerase III, delta subunit domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 208 Score = 56.5 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 10/181 (5%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + I K L+ + NEL KL ++ IT V ++ + + Sbjct: 29 EKKVIIEKRTIDRLIQLTNANFSKIMNELSKLIIATVDTKKITISEVDGLVTKSLEQNVF 88 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 ++++ +I A L L K + + +F+LL ++ I+ + + I Sbjct: 89 DLVDFVRDKRIKEAFELYHELLEQKEEPIKINAILIGQFRLLLQVKIL-QKHSYDQGSIA 147 Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRET---LHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + P + + ++ R ++ N ++ L +I+ ++ + + L +FQ L Sbjct: 148 STLK--VHPFRVKLAMQNARKFSNNSLKSAYLGLTEIEEKLKTSSQNPEL----LFQLFL 201 Query: 337 Y 337 Sbjct: 202 T 202 >gi|298252529|ref|ZP_06976323.1| DNA polymerase III, delta subunit [Gardnerella vaginalis 5-1] gi|297532893|gb|EFH71777.1| DNA polymerase III, delta subunit [Gardnerella vaginalis 5-1] Length = 342 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 57/342 (16%), Positives = 110/342 (32%), Gaps = 40/342 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L ++ + + D ++ L+A + ++E SLF Sbjct: 13 PVTLVVGGDAYLNELNARTVREKVQESAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68 Query: 82 KKKIILIENLS-TEKKVLDCLEEIII------------KNICNHII------II--KSNE 120 I++I NL ++ ++D +E +N N+ + +I Sbjct: 69 DGTIVIINNLQQADESLVDAIENFCKQAQNSENNAQNSENGENNFVDSSATWVIARHEGG 128 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +K + + ++ + + + + + L I +SI +A Q L++ LG Sbjct: 129 LKGKSIITRLTKAGANTITVPDLKKDDAKLNF-IMSIFERHNRSIEPQAAQRLVSVLGSK 187 Query: 181 RIASRNELQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 EL L S + +D IT V L + + A Sbjct: 188 T----GELAALCSQLCFDYDDNPITLDIVDRY------LIADPQVTGFFVADKAVAGHAG 237 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 LA++ + L K+ +I I I E + P + Sbjct: 238 SAVLAARTAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWALKMAMRQ 296 Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 L WN V + L + + + + I+ IA Sbjct: 297 LAGWNSAGVSQCLQSLAWADEQCKGGSSDANYALEKCIMLIA 338 >gi|297243414|ref|ZP_06927347.1| DNA polymerase III, delta subunit [Gardnerella vaginalis AMD] gi|296888661|gb|EFH27400.1| DNA polymerase III, delta subunit [Gardnerella vaginalis AMD] Length = 335 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 111/335 (33%), Gaps = 33/335 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L ++ + + D ++ L+A + ++E SLF Sbjct: 13 PVTLVVGGDAYLNELNARNVREKVQKSAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68 Query: 82 KKKIILIENLS-TEKKVLDCLEEIII-----KNICNHII------II--KSNEIKKNNTL 127 I++I NL ++ ++D +E +N N+ + +I +K + + Sbjct: 69 DGTIVIINNLQQADESLVDAIENFCKQTQNSENSENNFVDSSATWVIARHEGGLKGKSII 128 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 ++ + + + + + L ++ +S+ +A Q L++ LG E Sbjct: 129 TRLTKAGANTITVPDLKKDDAKLNFVMS-IFERHNRSVEPQAAQRLVSVLGSKT----GE 183 Query: 188 LQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 L L S + +D IT V L + + A LA++ Sbjct: 184 LAALCSQLCFDYDDNPITLDIVDRY------LIADPQVTGFFVADKAVAGHAGSAVLAAR 237 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + L K+ +I I I E + P + L WN Sbjct: 238 TAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWALKMAMRQLAGWNSA 296 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 V + L + + + + I+ IA Sbjct: 297 GVSKCLQSLAWADEQCKGGSSDANYALEKCIMLIA 331 >gi|325697128|gb|EGD39015.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK160] Length = 348 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ ++ E + + +I+ + + P + + R + Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 +++T+ + + + Y + + +L IA Sbjct: 306 AFLKKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|269794648|ref|YP_003314103.1| DNA polymerase III subunit delta [Sanguibacter keddieii DSM 10542] gi|269096833|gb|ACZ21269.1| DNA polymerase III, delta subunit [Sanguibacter keddieii DSM 10542] Length = 334 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 109/327 (33%), Gaps = 20/327 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + +G++ L+ + + DP + S SLF+ Sbjct: 24 PVVLVHGAEGLLVDRAVERLVGLAREV--DP-ETEKTTVQAALYQSGMLSV-LTSPSLFA 79 Query: 82 KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139 + +I+++E++ +T ++ + + + ++++ ++ L I + + Sbjct: 80 EPRIVVVESVEATTDALMTDVIAYLSAPADDVFLVLEHRGGVRGKKMLDAI--RASGAPV 137 Query: 140 ISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ++C P + + G + S A + L+ +G D + +L Sbjct: 138 VTCDPIKKDAEKVAFA-SAEFKRGGRRASAGAVRALVEAVGSDLRELASSCSQL--MADS 194 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D I E V + +A I G+ A+ L L + ++ K Sbjct: 195 DRAIDEAAVAKYYGGRVEATGFRVADAAIAGEAGQAVALLRHALDTGADPVPVVAALAMK 254 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + L K+ ++ + + P + + ++ L W + + Sbjct: 255 LRTLAKVAGMRGRGG-------SAADLGLAPWQVDRARKDLASWTPEGLATAITATAQAD 307 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344 + + + +L +A++A + Sbjct: 308 AEVKGAGRDPVFAVERAVLTVARSAGR 334 >gi|266624975|ref|ZP_06117910.1| putative DNA polymerase III, delta subunit [Clostridium hathewayi DSM 13479] gi|288863129|gb|EFC95427.1| putative DNA polymerase III, delta subunit [Clostridium hathewayi DSM 13479] Length = 135 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 21/141 (14%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNA 60 I++H F V++ YG + L NQ K IS ++ F L+ Sbjct: 8 IKNHSF-----------KPVYLLYGDEAFLKNSYKNQLKNAISGDDTMNYNYFEGKGLDL 56 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 E + ++ FS+K++I++E+ K D L + + +I +E Sbjct: 57 NE-------LISLADTMPFFSEKRLIMVEDSGFFKGASDELVAYLPQMPDTTCMIFVESE 109 Query: 121 IKKNNTLRKIAEKFTSVLAIS 141 + K + + K ++ ++ Sbjct: 110 VDKRSRMFKKVKEIGYAAEMA 130 >gi|327458704|gb|EGF05052.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK1057] Length = 348 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDMGQFELLKEQFLRQIQFQAGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G L Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L Y E I + + + I T I ++ +Q KI A L L Sbjct: 191 LKGYK-ESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARTLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306 + L +F++ ++ ++ E + + +I+ + + P + + R + + Sbjct: 250 IAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLAFL 308 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 ++T+ + + + Y + + +L IA Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341 >gi|288916982|ref|ZP_06411354.1| DNA polymerase III, delta subunit [Frankia sp. EUN1f] gi|288351691|gb|EFC85896.1| DNA polymerase III, delta subunit [Frankia sp. EUN1f] Length = 353 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 83/268 (30%), Gaps = 7/268 (2%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + + G ++ L+ + + +V E+ + + Sbjct: 13 VPQPAAPPPLVVVSGDEELLVA-RAVREVLAAARARDPEVEIVDRAPGELTD--ADMID- 68 Query: 74 INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + +TS+F +++++ + + + D L + + + + +++ + KN L + + Sbjct: 69 LGATSMFGGGRVLVVRGAAELPEDLRDALLAYVGRPLDDVTLVVVHSGAVKNRKLVDVMK 128 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K + + + D + + A Q LL +GGD +L Sbjct: 129 KAGAKVIPAAKITRPRDRHDFAVAEIRRLGGRTTDGAIQALLDAVGGDLREIAAVCDQLV 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D +I E V + +A I G + + L L + Sbjct: 189 --ADTDGVIDEAAVGRYHRGRAETSGFAVADAIIGGDLAGGLTLLRQALEGGTAPVLITS 246 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + L ++ S K + Sbjct: 247 AIAGGLRDLARVAAAGGGSKWDIAKALG 274 >gi|268319674|ref|YP_003293330.1| DNA polymerase III delta subunit [Lactobacillus johnsonii FI9785] gi|262398049|emb|CAX67063.1| DNA polymerase III delta subunit [Lactobacillus johnsonii FI9785] Length = 329 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 116/331 (35%), Gaps = 66/331 (19%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80 + G D F + Y + S L+ + + + + SLF Sbjct: 17 LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIIIK--NICNHIIIIKSNE-IKKNNTLRK 129 S +K+++I+N KK ++ L +I+ ++ + ++ + + E I + + K Sbjct: 69 SNQKVVVIKNPFFLMAKVPQKFKKQVEKLTKIVEHLGDLEDVVVFVANYEKIDRRKKISK 128 Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + +V+ Y + +I+ I+ A Q+L+ S + Sbjct: 129 LLLEHVNVIETTFKPYE-----VSGIIKAISKEEGYQITNMALQVLIQRSDQVLDVSLSN 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL + ED ITE + + I + I EI+ A K A + L + Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 LL F + + L + ++ R W+K+ + Sbjct: 244 IQLLAIFESQLEFLTCVKVL-----------------------------QNRRWSKDQIT 274 Query: 308 ETLH--------KIDHRIHLARKKKYLEKNI 330 + L +++++ L++ L++ I Sbjct: 275 KELKVNPYRVKLALENKVSLSKLTVLLKQAI 305 >gi|271963806|ref|YP_003338002.1| DNA polymerase III subunit delta-like protein [Streptosporangium roseum DSM 43021] gi|270506981|gb|ACZ85259.1| DNA polymerase III delta subunit-like protein [Streptosporangium roseum DSM 43021] Length = 327 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 101/287 (35%), Gaps = 12/287 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G ++ L+ + + + L +++ ++S SLF Sbjct: 12 PVILILGDEE-LLADRAVGEVIAAARATDPATEVYDLIGGKVE--PGEL-TRLSSPSLFG 67 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + ++ I + K+V+ + + ++++ +K + + + V+A Sbjct: 68 DRSVVAIRSAQDLSKEVVSEIVSYAAHPAEDTALVLVHPGGVKGKALVDGVKKAGAHVVA 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++ L ++ L +SI +A LL +G D +L+ + Sbjct: 128 VTKLTKPAERLAF-VKAELKRAGRSIGADAAAALLDAVGNDLRELAAACSQLA-FDTPGK 185 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I E V + + ++ ++G++ +A+ + LA+ L+ + Sbjct: 186 TIDEAAVARYHRGRAEVSGFTVADSAVEGRLGDALEQLRWALATGTAPVLLVSALAGGLR 245 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 L K+ N+ ++ P K + +Q L W + + Sbjct: 246 SLAKVGGA--PRNLRGGQLASHLGMP--PWKIDRVQRQLNGWGPDGI 288 >gi|159039377|ref|YP_001538630.1| DNA polymerase III, delta subunit [Salinispora arenicola CNS-205] gi|157918212|gb|ABV99639.1| DNA polymerase III, delta subunit [Salinispora arenicola CNS-205] Length = 326 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 20/295 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79 + + G ++ L + + D ++ E Q T E+ S SL Sbjct: 11 PIVLVLGDEELLATRAVTEAVARARSADPD------VDVREYQAGSLTVGEIAEMLSPSL 64 Query: 80 FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F ++++++ + K + L + + +++ K + + + Sbjct: 65 FGGRRLLILRSGQDARKDLTAALLGYVKNPDPDVQLVVLHLGAAKGKAFADGLKAAGATV 124 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS--SYCL 196 + + + E + + A + L+A +G D EL Sbjct: 125 IPAARLRGHRERVAFVREEIRRAGGRCADAAAEALIAAVGNDLR----ELAAACSQLMAD 180 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D I+ + V + + +AT+ G + A+ + L + + Sbjct: 181 NDGRISPETVSRYYRGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVPIADALA- 239 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + + S ++ ++R Q R W + + Sbjct: 240 --DGVRTVARVASAGRGSPYQLASTLGMPAWKIERA--QRQSRGWTPEGLVRAMR 290 >gi|296274358|ref|YP_003656989.1| DNA polymerase III delta [Arcobacter nitrofigilis DSM 7299] gi|296098532|gb|ADG94482.1| DNA polymerase III delta [Arcobacter nitrofigilis DSM 7299] Length = 327 Score = 56.5 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 108/319 (33%), Gaps = 20/319 (6%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++FYG L+ + N +++ + + + + N++ +SLF+ Sbjct: 18 AYMFYGQSDYLVEKYANLVATSVAAGE----EIEKVYFDDF--DFKYVKNKLLQSSLFAS 71 Query: 83 KKIILIE-NLSTEKKVLDCLEEI--IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 + I+LI+ N K L E I K+ + + K SV Sbjct: 72 RNILLIKLNKKLNKNETTELIEACNINKDSKVIFACMGDGDFKTMGGYFTTKNNSVSVRM 131 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + YP + ++E A L D S N+L+KL+ L + Sbjct: 132 FTPYPGEA---IQILETEARALGLKYEVSALNHLYFMHRSDLNLSVNDLKKLA--ILNEE 186 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I+ + V+ + +E+ + + G++ F L M LL Sbjct: 187 SISSKLVEIHCFGIGSVSLEDFLFNLLSGQLVK--RDLHFLLEEGMNEINLLTQIGAFLH 244 Query: 260 LLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318 L I + + ++I+ I K+ L +++I L E + ++ Sbjct: 245 QLFMISSYSRTIGTPNPKEILGYIPPQNIWEKKTKL--AIKI-KPELFLELFNFLNDLEL 301 Query: 319 LARKKKYLEKNIIFQTILY 337 + K + N Q L Sbjct: 302 DLKSSKIPDHNAYIQASLR 320 >gi|308233989|ref|ZP_07664726.1| DNA polymerase III, delta subunit [Atopobium vaginae DSM 15829] gi|328944002|ref|ZP_08241467.1| hypothetical protein HMPREF0091_10692 [Atopobium vaginae DSM 15829] gi|327491971|gb|EGF23745.1| hypothetical protein HMPREF0091_10692 [Atopobium vaginae DSM 15829] Length = 336 Score = 56.1 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 106/309 (34%), Gaps = 31/309 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G+D + E++ + K + F+ +A +I K+ T + + Sbjct: 10 PVYVALGTDTAKMAEIVRRLKLYVQPQMS-FFNCNEWHAADI-KDSQTLLSVFLQMPVCD 67 Query: 82 KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++ +I + K V+ + + + + I+ + + KN+ L K I Sbjct: 68 TRRLAIIYEAEALPKDVIADIIDYLKHPNPSCIVCLCMQRLAKNSKLYKAISAVDPKAII 127 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-------- 192 +C P + S+ +A L+ +G +L+ L Sbjct: 128 NCEPQTASQAHRTLSVLEKKLNVSVDFDAADELINRVGTSLSVLEKQLEILKHSVSVSST 187 Query: 193 --SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ ++ + IT+ V + T+ E+I+A + A+ L + ++ L Sbjct: 188 DHAHAVQPLRITKDLVCSHVIRTNAQQPWELIDALAARECARALTLLE--AQAQTSPLYL 245 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L + ++ + N++ + + + ++ W N +R Sbjct: 246 LALISK------RLRELICAKNLAARGQLALMSEKVN----------VKSWQVNKLRAAA 289 Query: 311 HKIDHRIHL 319 + Sbjct: 290 DNFEAAELD 298 >gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM 8797] Length = 484 Score = 56.1 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 104/274 (37%), Gaps = 24/274 (8%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +I + +N S+ SK KI +I+ + K+ + L + + + N I + E K Sbjct: 107 DDIRSLRANVNVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNK 166 Query: 124 -NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 +T+ ++F Y + + D +++ Q S++ +A Q++ GG Sbjct: 167 LPDTILSRCQRFDFG-----YIEEN-SICDRLKQIAEAEQVSVADDAIQLVARRAGGSMR 220 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 S++ +L S+ + +T + V I+ + E+I+A I+ K A+ D L Sbjct: 221 DSQSIFDQLLSF--GESHLTAESVHRILGTASDERLIELIDALIEQKRDVALTHFDAALN 278 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 + + + + L + L ++ Q T +I M R LQ W Sbjct: 279 AGVQLNEFVDQLLNYLRDL----------SVVATGASQVTLLSISEMNRASLQRQAEAWG 328 Query: 303 KNLVRETLHKIDHR----IHLARKKKYLEKNIIF 332 ++ + + +E +I Sbjct: 329 IQTCLAAFQILNEARNRMFRASHGRALVELALIR 362 >gi|304439667|ref|ZP_07399569.1| DNA-directed DNA polymerase III delta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371847|gb|EFM25451.1| DNA-directed DNA polymerase III delta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 331 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 20/264 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + LI + K + F+LV + K+ + + + + + Sbjct: 14 AYLLYGKESLLIENAVEYLKNKYVDKSFEAFNLVNV------KDYESLVSSCETLPVMAN 67 Query: 83 KKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLA 139 KK+I++ N + L +++ + K+I ++++ I +E K N + + + Sbjct: 68 KKLIIVSNSEEFESNLIDVDKTLEYMKDIPDYVVAIFIDENSKLNKSKKFYKFFKKNKRE 127 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA-------NLGGDRIASRNELQKLS 192 + + + + IS L++ NL + +NEL K Sbjct: 128 VEFDKVSPQEVTRFVNIYFNRENIEISPSDVNYLISKSAYNSKNLETTLMDLKNELSKFL 187 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 SY I + ++ + I ++ +A I AI P Sbjct: 188 SY----KKIDRSIIDSVLTENIDTNIFKLTDAIFSRDIDIAITEFKNLYDIGEPLQKTFV 243 Query: 253 GFLQKFQLLEKIHIIKECSNISFE 276 + +LL ++E + +E Sbjct: 244 LIARSIRLLMGYMKLREKNTPDYE 267 >gi|332300218|ref|YP_004442139.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica DSM 20707] gi|332177281|gb|AEE12971.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica DSM 20707] Length = 349 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 32/279 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + YG + I L +N LVV E + + S+F+ Sbjct: 19 PLVLGYGEESYYINRLEELVVENYIPQEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++I++ + KK ++ K +I + + TL + A Sbjct: 77 PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129 Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183 N L + + L ++ +A L+ +G D Sbjct: 130 --KKNAQALKSQVALIESTPVRRDNELREAMIHMAEGLGLQLAPQAISTLIERVGYDLET 187 Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241 +ELQKL+ LI+ V+ ++ + +++NA + K A+ +A Sbjct: 188 LYSELQKLAIPAKSAGGLISRAMVQQVVSKSRKYGPYDLLNAVQRRKDDEALQIALAMAE 247 Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 + P ++ F L H + S + ++ + Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286 >gi|169628723|ref|YP_001702372.1| hypothetical protein MAB_1633 [Mycobacterium abscessus ATCC 19977] gi|169240690|emb|CAM61718.1| Putative DNA polymerase III delta subunit [Mycobacterium abscessus] Length = 316 Score = 56.1 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 105/301 (34%), Gaps = 30/301 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + G ++ L+ + + + L A ++ +++ E+ S SLF+ ++ Sbjct: 7 LILGDEELLVERAVTSVLHAVRGKAGADIPVNRLRAGQV--DVAELA-ELLSPSLFADER 63 Query: 85 IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKK--NNTLRKIAEKFTSVLA 139 +I+IE + K + +E+ ++++ K TL+ + + Sbjct: 64 VIVIEAAAEAGKDAVTLIEQAATDLPPGTFLLVQHSGGGRAKALATTLQNLGASVHNCAR 123 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197 I D + + + + + I++ +G D +++L++ C + Sbjct: 124 I----TKAAERADFVHKEFRRLGQKVDADVVAIVIDAVGSD-------IRELAAACSQLV 172 Query: 198 ---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D + V+ + +I + + G I + + + +P L Sbjct: 173 SDTDGSVDGAAVRRYHSGRAEVSGFDIADKAVTGDIAGSTETLRWAMQRGVPHVLLADAL 232 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + + ++ IK+ + + P + Q+ R W ++ V E + + Sbjct: 233 AEAVHTIARVGPIKQ----NAYAAASELGMP--PWRIEKAQKQARRWTRDAVAEAMRVVA 286 Query: 315 H 315 Sbjct: 287 A 287 >gi|328949099|ref|YP_004366436.1| DNA polymerase III subunit delta [Treponema succinifaciens DSM 2489] gi|328449423|gb|AEB15139.1| DNA polymerase III, delta subunit [Treponema succinifaciens DSM 2489] Length = 338 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 110/325 (33%), Gaps = 32/325 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++F G + G E I + S + + I ++ + SLFS Sbjct: 6 VYLFTGPEAGEKNEAIENLRDAASKKNN---GIEQYKYYAADVRIEDIVAQLQNASLFSP 62 Query: 83 KKIILIENLST--EKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 I + N +K ++ L I KN N +++I + N++ K E Sbjct: 63 ALFISLRNAEQIKQKSDIESLVSWIKASKNSPNTLVLI-----SEENSIDKKIESAVPSS 117 Query: 139 AISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + +E SIS +A + +L + + + ++E + +C Sbjct: 118 HKKIFWEMFENRK-PQWVENFFRKNGFSISPDAVEQILEMVENNTESLKSECSRF-FFCF 175 Query: 197 EDIL-ITEQHVKDIICDTHVLYIEEIINATIQ------GKIYNAIMLADFFLASK-MPSH 248 E IT V+ I+ + ++ + +++ + A+K Sbjct: 176 EKGTTITSDDVEKILSHNREENAFTLFDSMADISKNPQQRFESSLEILQKIRATKESNGI 235 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ---ESLRIWNKNL 305 AL+ G F+ L H + N + ++ + + + ++ +IW Sbjct: 236 ALIAGLTYCFRQLRLWHSLHSDGNSPADSELKSSG----FSGKRNQEKYSKAAKIWTAGT 291 Query: 306 VRETLHKIDHRIHLARKKK-YLEKN 329 L + R+ LE+ Sbjct: 292 ASSILALLSATDISIRETGTALEET 316 >gi|293365662|ref|ZP_06612371.1| DNA-directed DNA polymerase III delta subunit [Streptococcus oralis ATCC 35037] gi|307703609|ref|ZP_07640551.1| DNA polymerase III, delta subunit [Streptococcus oralis ATCC 35037] gi|291316030|gb|EFE56474.1| DNA-directed DNA polymerase III delta subunit [Streptococcus oralis ATCC 35037] gi|307623016|gb|EFO02011.1| DNA polymerase III, delta subunit [Streptococcus oralis ATCC 35037] Length = 345 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 124/337 (36%), Gaps = 31/337 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + +Q K I D + + E+ E+ S F+ +K Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76 Query: 85 IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I+++++ + +K+ L E + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136 Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 +V AI + L ++ ++++ + LL G +E+QK Sbjct: 137 ATVFDAIEP---KEQELRQYFQKWSQKQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + D +I E+ + + I T I ++ + KI A L L Sbjct: 190 FLQSYKSDGMIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNL 305 + L +F+ ++ I+ E S +I+ + L++S R + Sbjct: 250 IAVMLGQFRTFTQVKILSET-GQSESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAF 307 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ + + + + Y + + + +L IA A Sbjct: 308 LKRAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344 >gi|322517052|ref|ZP_08069937.1| DNA-directed DNA polymerase III delta subunit [Streptococcus vestibularis ATCC 49124] gi|322124312|gb|EFX95820.1| DNA-directed DNA polymerase III delta subunit [Streptococcus vestibularis ATCC 49124] Length = 344 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 95/274 (34%), Gaps = 25/274 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + +F K I D F + + + + + + S Sbjct: 18 ITVLAGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70 Query: 79 LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ ++ + +K LD LE + + +++ + ++ L Sbjct: 71 FFADEKVVIFDHFEDMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ L + P L ++ K + LL D + L Sbjct: 131 KLLKRD--ALVLEANPLKDAELRTYFQKQAHQEGLIFEKGVFEELLIKSSFDFSDVQKNL 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L Y + I+ Q + + I + I ++ ++G+I L Sbjct: 189 AFLKGYK-TEGNISSQDIAEAIPKSLQDNIFDMTQLLLRGQIQGVRELVHDLRLQGEDEI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+ ++ ++ S ++I+ Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSL 280 >gi|331703862|ref|YP_004400549.1| hypothetical protein MLC_8420 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802417|emb|CBW54572.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 316 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ FY D L+ NQ KK I D + + L+ I+ + +T ++ + + + FS Sbjct: 1 MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55 Query: 82 KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130 K II+I + + L+ LE ++ N++II + SN+ K + K Sbjct: 56 SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNVIIFTLNSNKFSKKLKIAKY 115 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 E +V + D K + +I+ L K I + L D NE+ K Sbjct: 116 IESNFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLANQIYNLLPNDLQIITNEINK 173 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L++ + +K + H I ++++ I I N I L ++ L Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDTFINNNIDNFIKLYHDYILLNDDIIGL 230 Query: 251 L 251 + Sbjct: 231 I 231 >gi|332366019|gb|EGJ43775.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK1059] Length = 359 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 31 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 83 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 84 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 143 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + + L + + A LL G +E+ K Sbjct: 144 LKRDGKIFEAA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 197 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I ++ +Q KI A L Sbjct: 198 NLAFLKGYKESGQICLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLALQGEDE 257 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303 L+ L +F++ ++ ++ E + + +I+ + + P + + R + Sbjct: 258 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 316 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 +++T+ + + + Y + + +L IA Sbjct: 317 TFLKKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 352 >gi|256375344|ref|YP_003099004.1| hypothetical protein Amir_1206 [Actinosynnema mirum DSM 43827] gi|255919647|gb|ACU35158.1| DNA polymerase III, delta subunit [Actinosynnema mirum DSM 43827] Length = 322 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 23/337 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +SH V + G ++ L+ E + + L + ++ E+ S S Sbjct: 1 MSHGVQLVIGDEELLV-ERAVRAALVAAREADPQADLTRVRVSDLT--PPELA-ELVSPS 56 Query: 79 LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNT-----LRKI 130 LF++ ++I +E K++ D + + +++ K LRK Sbjct: 57 LFAEGRVIALEAAQEASKEIADAVVSYVKAPADGVTLVVVHTGGGRSKAAKELPAVLRKA 116 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + T I+ P+ + + + A L+ +G D + Sbjct: 117 GAEVTECPKITRAPERE----AFVRNEIRAAGGKADPAAIGALIEAVGSDLRELAAAASQ 172 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + D I E+ V+ + + + + G A+ + L +P + Sbjct: 173 MV--ADTDGKIDEEAVRRYHRGRAEVTGFAVADKAVVGDRAGALEALRWALQLGVPHVLV 230 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + + K+ + P K Q +R W+ + + + Sbjct: 231 ADALA---DAVRTVARVSAVGRGDPFKLAGELGMP--PWKIKKAQGQVRGWDGDGLARAM 285 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + + +L I + Sbjct: 286 TVVADLNAEVKGMAADAGYALERAVLNIVRAHGGTRR 322 >gi|284044288|ref|YP_003394628.1| DNA polymerase III subunit delta [Conexibacter woesei DSM 14684] gi|283948509|gb|ADB51253.1| DNA polymerase III, delta subunit [Conexibacter woesei DSM 14684] Length = 325 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/309 (10%), Positives = 95/309 (30%), Gaps = 21/309 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ +G D G + E + + + V + ++ Sbjct: 7 PAYLIHGDDHGRLAERRARLRALAERESGSQ-GIEVFEGDAATAEAVATALSAMTFAI-- 63 Query: 82 KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKN-------NTLRKIAEK 133 ++ ++++ + K + +E + + ++ E + +R Sbjct: 64 GRRFLIVDGVERWKAADMRLVEPALKTLPPDTTVVFFGREEGRAKVPDRLIAAVRAAGGD 123 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 ++ L + + L + A + L+A++G + EL+KL+ Sbjct: 124 VSTELTVKPW-----DLPKWAVAQARGLGLELHPSAARALVAHVGERQQRLLRELEKLAL 178 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 E I + +++I + + + +A + A + LL+ Sbjct: 179 ELGEGARIDLEQIEEITASSAERKVWTLADALVARDGLAATRVYFELREQGERLAGLLYT 238 Query: 254 FLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 ++ + L+ + + S ++ + P ++ + +R L Sbjct: 239 IARRLRDALDV--AQRLETGESASQVRRGLRMP--PKAAERFVADVQRTDVAGLRAALGI 294 Query: 313 IDHRIHLAR 321 + +R Sbjct: 295 VADLELASR 303 >gi|189502748|ref|YP_001958465.1| hypothetical protein Aasi_1447 [Candidatus Amoebophilus asiaticus 5a2] gi|189498189|gb|ACE06736.1| hypothetical protein Aasi_1447 [Candidatus Amoebophilus asiaticus 5a2] Length = 341 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 103/269 (38%), Gaps = 15/269 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V+ G + I +I+ + N+ F+L +L E ++I+ ++ + Sbjct: 20 PVYFLQGEEVYYIDLIIDYLENNLLEESEKIFNLTILYGKE--QSIAQAISQSKQYPVGV 77 Query: 82 KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRK-IAEK 133 ++++++++ + L IK I+ + TL K +AE Sbjct: 78 ERQVVIVKEAQDLQDLNRDAGQTLLANYIKMPNPTTILAFGYKHKTLSTKTTLSKVLAEH 137 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 V A Y DN+ L I + I+++A +L +G D + EL K++ Sbjct: 138 AVLVNAKRLY-DNQ--LPAWISNYVTEKGLHIAEKAIFMLQEFIGSDLVRLAKELDKVAL 194 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL--L 251 IT+ +++ + + E+ +A +Y A + + + A+ + Sbjct: 195 NLQPGGKITDNIIQEYVGISKQFNAFELQSAIATRDVYKANQIIFHLIGNNKSQIAIPLI 254 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 F + +H ++ S+ + + +Q Sbjct: 255 GLLFTFFSKILLLHQARDKSSQALSQALQ 283 >gi|308184995|ref|YP_003929128.1| DNA polymerase III subunit delta [Helicobacter pylori SJM180] gi|308060915|gb|ADO02811.1| DNA polymerase III subunit delta [Helicobacter pylori SJM180] Length = 340 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKYNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129 +++++ + + KK + + + + N +II + ++ K ++ + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + + ++E IS L D S N Sbjct: 133 FFQKSPLKDEAICVRFFTPKTWESLKFLQERANALHLDISSHLLNALFEINNEDLGVSFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|42518930|ref|NP_964860.1| hypothetical protein LJ1004 [Lactobacillus johnsonii NCC 533] gi|41583216|gb|AAS08826.1| hypothetical protein LJ_1004 [Lactobacillus johnsonii NCC 533] Length = 329 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 29/254 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80 + G D F + Y + S L+ + + + + SLF Sbjct: 17 LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IKKNNTLRK 129 S +K+++++N KK ++ L +II ++ + ++ + + E I + + K Sbjct: 69 SNQKVVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLSDLEDVVVFVANYEKIDRRKKISK 128 Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + +V+ Y + +I+ + I+ A QIL+ S + Sbjct: 129 LLLEHVNVVETTFKPYE-----VSGIIKAISKEERYQITNMALQILIQRSDQVLDVSLSN 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL + ED ITE + + I + I EI+ A K A + L + Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243 Query: 248 HALLHGFLQKFQLL 261 LL F + + L Sbjct: 244 IQLLAIFESQLEFL 257 >gi|33862203|ref|NP_893764.1| DNA polymerase III subunit delta [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634421|emb|CAE20106.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 333 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 125/344 (36%), Gaps = 38/344 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + I +G+D + I Q ++ LN + I ++EI + L Sbjct: 2 PIQIIWGNDLNASNKFIKQIIDEKVSKTWGEINISYLNGDD-DNQIKQAFDEILTPPLGD 60 Query: 82 KKKIILIENLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTL------RKIA 131 ++++++N + E+I N ++++ + K ++ L + + Sbjct: 61 GSRVVVLKNNPLFTNKNEEIRLKFEKIYQNIPSNTYFLLQNTK-KPDSRLKSTKFIQNLI 119 Query: 132 EKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 +K ++ PD + +E + + K +++ ++G D +EL Sbjct: 120 KKDLAIETSFSLPDIWDFEGQKRYLEFTANSMNIHLGKGTADLIIDSVGNDSFNLASELS 179 Query: 190 KLSSYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 K Y LI E V I + I +II+ +Q I + ++ + L Sbjct: 180 KAKIYLSAINNNENKGLILESDVVKKIFNDQQSNIFKIIDHLLQNSISDGLIEIYYLLKK 239 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT--------EKNIIPMKRNILQ 295 P+ L G + + ++H I + + S E+ + K K I +++ Sbjct: 240 GEPALRLNAGLISQI----RMHTIVKLLHKSGEQDLSKICKLANISNPKRIFFIRKK--- 292 Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + + + + + + +K N+ + ++ ++ Sbjct: 293 --VNNISSDFLIKLMSNLLDIESSLKKGNNP-INVFAENLVNLS 333 >gi|330839019|ref|YP_004413599.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC 35185] gi|329746783|gb|AEC00140.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC 35185] Length = 354 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/324 (11%), Positives = 103/324 (31%), Gaps = 40/324 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ G + I + + + + A ++ + + + F Sbjct: 18 VYLLAGEEHYYIEKAKAAILERLFPAGEGLRDALEEAAPDMDADA--LIGLLETVPFFVP 75 Query: 83 KKIILIENLS--TEKKVLDC---------------------LEEIIIKNICNHIII-IKS 118 K ++L+++ EKK L ++ +I + + Sbjct: 76 KHVVLVQDSPLFREKKRPAADGEEAKAAKGKKGDADKKEERLLHLLADMPDYAYVIFLCA 135 Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLAN 176 + K K E +VL D + D + L + +EA + Sbjct: 136 GKADKRRKAYKTVEAAGAVLD----ADAVRPWEIGDWLAGKLAEIHREFDREAHAYFMGA 191 Query: 177 LGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 + S + E +KL+ Y + I + + + +++A + + Sbjct: 192 VSMMHEVSLSYLDKEFEKLALYT-AEKRIGRAELAAVFSGLPEVSSFAMMDAVSEKDVKK 250 Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292 A+ L A + + LL ++ + L + ++ + + + + N ++ Sbjct: 251 ALTLLRRQTADGVYAPVLLALMVRHVRQLWQAKLLL-AQGVRGKALGPSMKLNPFIAEK- 308 Query: 293 ILQESLRIWNKNLVRETLHKIDHR 316 L + +++ +++ + + Sbjct: 309 -LGRASMKFSEPVLKRAMLSLIDA 331 >gi|171742870|ref|ZP_02918677.1| hypothetical protein BIFDEN_01986 [Bifidobacterium dentium ATCC 27678] gi|171278484|gb|EDT46145.1| hypothetical protein BIFDEN_01986 [Bifidobacterium dentium ATCC 27678] Length = 342 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 27/344 (7%) Query: 14 TKNLFLSHFVFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 K + I +G D L + + ++ L+ L+A+ Sbjct: 16 PKTSATNTPFHIVFGGDSYLNEQTVRDQCVAAQRKY-----PDAELIELDAMGADHYA-- 68 Query: 70 FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---IIKNICNHIIII--KSNEIKK 123 ++E S SL S + I+ I NL T++K+ D + E K+ + I+I +K Sbjct: 69 -FDEAVSPSLLSDRAIVKIVNLQGTDEKLGDAMVEYCRQACKDPTDCSIVICQHEGGVKG 127 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + ++ + + L ++ + + + A Q L+A LG Sbjct: 128 KRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNRRVDPMAAQQLVAVLGEKTGE 186 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + +L + +D + V + + + + + G+ +AI+ + Sbjct: 187 LAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVADQAMAGRSADAIIAMRSAVEQ 245 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + AL+ K + L K ++ I + E P L W Sbjct: 246 GIDPIALIGALAMKLRTLAKASAVR-------AGTISQAEAKTNPWALKNATRQLPGWTS 298 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + ++ + ++I I+Q N + Sbjct: 299 AGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGRINRS 342 >gi|15612233|ref|NP_223886.1| DNA polymerase III subunit delta [Helicobacter pylori J99] gi|7674428|sp|Q9ZJY0|Y1168_HELPJ RecName: Full=Protein jhp_1168 gi|4155765|gb|AAD06742.1| putative [Helicobacter pylori J99] Length = 340 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 25/280 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNT--------LR 128 +++++ + + KK ++ + + + N +II K + T + Sbjct: 73 GSSLVILKLDFALHKKFKENDINPFLKALERPSHN-RLIIGLYNAKSDTTKYKYTSEIIV 131 Query: 129 KIAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 K +K + + + + ++E IS L D S Sbjct: 132 KFFQKSPLKDEAICVRFFTPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSVSF 191 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 192 NDLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGK 246 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 247 KDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|152990907|ref|YP_001356629.1| DNA polymerase III subunit delta [Nitratiruptor sp. SB155-2] gi|151422768|dbj|BAF70272.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 319 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 101/268 (37%), Gaps = 16/268 (5%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 ++ ++F+G + ++ K + + + + L E + N ++ SL Sbjct: 12 TYNAYLFWGDEP----YFTQKYTKKTADSITPKENRLQLYFDEYDFEAAK--NYLSQASL 65 Query: 80 FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-IKSNEIKKNNTLRKIAEKFTSV 137 F +++I+ + + KK ++ L ++ KN + +I + SNE KK L + S Sbjct: 66 FGDTNLLIIKHDKALPKKEIETLIQLCNKNPNSFLIYQLDSNEGKK---LETLFGPKNSA 122 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + + + + + +I + + LLA L + + EL KLS Sbjct: 123 VHVRFFKPSLHEAKNELLHYAKEQNINIDSYSIEHLLATLQNNLSLAIQELAKLSLI--- 179 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + I + + ++ + L +E + + I+ + L + +L GF Sbjct: 180 EGPIGSKEIDALVFPLNPLKLEHLYKSIIKKEP--IEEQLQKILEEEQNEMKILLGFENF 237 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKN 285 Q L + S K I + Sbjct: 238 LQQLFLFYSYIRLHGKSDSKAILGYKLP 265 >gi|227889788|ref|ZP_04007593.1| DNA polymerase III, delta subunit [Lactobacillus johnsonii ATCC 33200] gi|227849652|gb|EEJ59738.1| DNA polymerase III, delta subunit [Lactobacillus johnsonii ATCC 33200] Length = 329 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 29/254 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80 + G D F + Y + S L+ + + + + SLF Sbjct: 17 LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIIIK--NICN-HIIIIKSNEIKKNNTLRK 129 S +KI++++N KK ++ L +II ++ + + + +I + + K Sbjct: 69 SNQKIVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLGDLEDIAVFVANYEKIDRRKKISK 128 Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + +V+ Y + +I+ I+ A QIL+ S + Sbjct: 129 LLLEHVNVIETTFKPYE-----VSGIIKAISKEEGYQITNMALQILIQRSDQVLDVSLSN 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL + ED ITE + + I + I EI+ A K A + L + Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDEKYQEATQRLEDHLREGASA 243 Query: 248 HALLHGFLQKFQLL 261 LL F + + L Sbjct: 244 IQLLAIFESQLEFL 257 >gi|206895830|ref|YP_002247358.1| DNA polymerase III, delta subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738447|gb|ACI17525.1| DNA polymerase III, delta subunit [Coprothermobacter proteolyticus DSM 5265] Length = 324 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 19/218 (8%) Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + S SLFS ++I++E L +K + D + + + ++++ + K Sbjct: 71 LTSYSLFSPMRVIVVE-LPAKKVIRDAMISAVSSGNLSGVVVVMGDA------------K 117 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + C P K + I + E + LL GD ++ E++KLS Sbjct: 118 IPGAEVVECKPLAKKQAVSWIVAEFRLHGVRCDLEVAEQLLDLCDGDLWSAYTEIEKLSL 177 Query: 194 YCLEDILITEQHVKD-IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +T +H++ ++ +++A A + L + Sbjct: 178 VT---KKVTMEHLQTFVVGSMVKGNYFALMDALQAADEKRAQLEMGSLLEQGEALQQIFV 234 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + F L K + + + M+ Sbjct: 235 FLYRIFSLAWKSKEFNMDNKAALAQA--AGRSPFFVMR 270 >gi|319790679|ref|YP_004152312.1| DNA polymerase III delta [Thermovibrio ammonificans HB-1] gi|317115181|gb|ADU97671.1| DNA polymerase III delta [Thermovibrio ammonificans HB-1] Length = 317 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 108/308 (35%), Gaps = 35/308 (11%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 +++H+ ++ L + +G + L QF K ++ H + Sbjct: 5 QLKTHEALK--LIGKKLPFKKVLIHGEEVYL----TQQFVKKVA-ALHP---VERFFPEA 54 Query: 63 IQKNISTFWNEINSTSLFSKKKI-ILIENLSTEKKVLDCLEEII---IKNICNHIIIIKS 118 I + + +SLF I +++ K + E + + I+ Sbjct: 55 IDE-----FLNFTGSSLFGGSSIPVILYAEELPKTLKKKKERELFLKKLRSLDTFIVAAH 109 Query: 119 NEIKKN-------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 E+ + + ++ + + + + L+ + L K +SKE + Sbjct: 110 CELDYRTLKGELFSQVEQLCDALLTSERLP-----VNAIYGLLNKKFLQSGKKVSKEVLK 164 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +L+ +G D R+E +KL +Y +T + V+ ++ T +I +G Sbjct: 165 LLVELVGTDLTELRHEAEKLINY---PGELTPEVVRGLVFPTEKSNAFTLIYPLARGNTK 221 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS-NISFEKIIQKTEKNIIPMK 290 + + LAS L+ + + K+ + K+ K + K + + Sbjct: 222 EYLKQLNALLASGNEPLQLIALLQTQARQAVKLALKKQVKLPKEAAKQMALLLKQVGAKR 281 Query: 291 RNILQESL 298 +L ++L Sbjct: 282 MLLLLKAL 289 >gi|319760447|ref|YP_004124385.1| DNA polymerase III, delta subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039161|gb|ADV33711.1| DNA polymerase III, delta subunit [Candidatus Blochmannia vafer str. BVAF] Length = 340 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 124/325 (38%), Gaps = 20/325 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 F++I +G+D L+ + I +Y + L+ I T E N LFS Sbjct: 19 FIYILFGNDLSLLQDSHEDIINTIKKSYDCEHFRIQLDKNYDWDQIFTLCKETN---LFS 75 Query: 82 KKKIILI-----ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAE 132 K +I+ I +S+ KK + L + N+ +II K N+ + N L K Sbjct: 76 KLQILSIHFSQDYPISSLKKNVSTLLSLTKDNLVFILIIYKLNQFIQQNNWIHHLYK--- 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 ++L I+C L I+ Q I A Q+L + G+ I + L+ L Sbjct: 133 --QNILLINCITPEYSRLTMWIQNQAKRMQLVIENLACQLLCSYYEGNTIRLKQILEHLF 190 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D +T VK II D+ I + + G+ A + + ++ LLH Sbjct: 191 L-IYPDGNLTFDRVKTIIVDSSCFNYNHWIESILMGRKQRANRILNQLDYMRLNLKILLH 249 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + ++ +I + + ++ K +R +L +++ + + + + Sbjct: 250 KIQHEILIIIRIKYDL-IAKKNVLSVLFDKYKIYTQYRRIMLSKAMHRLSLMQLHKAIFL 308 Query: 313 IDHRIHLARKKKYLEKNIIFQTILY 337 + + Y+E + I +L Sbjct: 309 LTQMELQYYQN-YMEVSKIHFELLA 332 >gi|157164878|ref|YP_001467163.1| DNA polymerase III subunit delta [Campylobacter concisus 13826] gi|112801385|gb|EAT98729.1| DNA polymerase III, delta subunit superfamily [Campylobacter concisus 13826] Length = 332 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 123/324 (37%), Gaps = 29/324 (8%) Query: 15 KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNE 73 N LS++ F+ +G+D+ I F K I Y + +L+ L E N + + Sbjct: 11 ANANLSNY-FLLFGADEFQIE----LFGKEILSFYSSEDANLLSLYFDEY--NYAQASSH 63 Query: 74 INSTSLFSKKKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIK--SNEIKKNNTLRK 129 ++ SLF K I+ ++ S +K L+E+I ++ + + ++K +K Sbjct: 64 LSEQSLFGGKNILYVK--SDKKIPAKELKELISLCSKSHDNYFLFELYEADMKLVFDTQK 121 Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 PD I+L+ +S +I+K A L + + +EL Sbjct: 122 AF-GANFARFFKPSNPDEAINLLA---KSSAKIGLNITKNALYELYFTHNENLYLAASEL 177 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ-GKIYNAIMLADFFLASKMPS 247 KL S + I + VK ++ + ++ N + I N + Sbjct: 178 TKLKSL---NTHIEQDDVKRLVFGLGGINFDDFFNKFMALKDIKN--DFFTYLEDPNFNE 232 Query: 248 HALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 LL+ + F L KI+ IK ++ ++ I + + N+L+ + + N Sbjct: 233 ILLLNSLYKAFFRLFKIYSYIKINGRLNLDEAI-GYQPPVNV--ANLLKANSLKLSLNAY 289 Query: 307 RETLHKIDHRIHLARKKKYLEKNI 330 E ++ + ++K I Sbjct: 290 LEIFKTLNLAELELKTNTKMDKEI 313 >gi|242278124|ref|YP_002990253.1| DNA polymerase III delta [Desulfovibrio salexigens DSM 2638] gi|242121018|gb|ACS78714.1| DNA polymerase III delta [Desulfovibrio salexigens DSM 2638] Length = 326 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 93/286 (32%), Gaps = 35/286 (12%) Query: 29 SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 D L+ I + ++ T D V ++ FW+++ +LF K++++ Sbjct: 12 PDAELLHANIAELQEKYGAT--DYEKKVYWADEDL---PQQFWDDLTLQTLFGSSKVVIL 66 Query: 89 ENLSTEKKVL-DCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISC--Y 143 K + D +++ + + + I +S K + + +K C + Sbjct: 67 RRAHKLKAAVWDNIDKTVASLASSSFLFICLESQWKSKAAPIPAVLKKRK------CWKF 120 Query: 144 PD-----------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 D ++ + + + I L L D A+R EL KL Sbjct: 121 ADKQKWFWKSAGLDQKSISGFVGKWARANGLHIDSPVLNALSQALPKDARAARLELDKLD 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D I +HV +I + + + + +G + + + L + +++ Sbjct: 181 LAAGPDRKILMEHV-GLIAHSEEMDFFAFMRSMSEG--GDPVEIWRRVLTNHSEKDSMIF 237 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + ++ + ++ L + L Sbjct: 238 MLTASLTREARALWMMIHGEDAEVRL-----PPFVKKQKQALAQRL 278 >gi|111035803|emb|CAL29430.1| DNA polymerase III tau subunit [Wolbachia endosymbiont of Onchocerca volvulus] Length = 494 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 81/230 (35%), Gaps = 27/230 (11%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC-----YPDNKIHL 150 + L + + + + I+ + EIKK + C Y + Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK----------MPITIIARCQRFDLYKIPATKI 180 Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 + + + I A +++ + + + + Y ++ I+ + V +I+ Sbjct: 181 VGRLNDIAQKENYLIENRALELIAHHCSNSMRNALFLMNQAMLYS-KNGPISTEDVTEIL 239 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE- 269 + +++ A + + A+++ D A ++ LQ QL+ + I KE Sbjct: 240 GLVDEGIVFDLMEAVLDSDLRKALLVFDKA-AKTANPLSIFENLLQTIQLICRFLITKEV 298 Query: 270 -----CSNISFEKIIQKTEKNIIPMK--RNILQ--ESLRIWNKNLVRETL 310 K + + I + + +L+ +++++ + N + + Sbjct: 299 DSSLLEHGKDRIKDLSARKSLIFFSRLWKVLLKGIQAIKVSSCNDIAAEM 348 >gi|218133047|ref|ZP_03461851.1| hypothetical protein BACPEC_00909 [Bacteroides pectinophilus ATCC 43243] gi|217991920|gb|EEC57924.1| hypothetical protein BACPEC_00909 [Bacteroides pectinophilus ATCC 43243] Length = 133 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 KF+ + KN V++ YG + L+++ ++ K+ I D + +I +I Sbjct: 2 KFLNEHIKNN-TFKQVYLIYGEETYLVYQYRDRLKQAIIGD--DTMNYSCYEGAKI--DI 56 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 ++ F+ +++I++++ K + L E I +I +E+ K N + Sbjct: 57 KELLTTADTLPFFADRRLIVVQDSGFFKSSTEGLAEYIRSMPEYLHMIFIESEVDKRNRV 116 Query: 128 RKIA 131 K Sbjct: 117 YKAV 120 >gi|154249357|ref|YP_001410182.1| DNA polymerase III delta [Fervidobacterium nodosum Rt17-B1] gi|154153293|gb|ABS60525.1| DNA polymerase III delta [Fervidobacterium nodosum Rt17-B1] Length = 320 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 17/209 (8%) Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKN 124 N S LFS+ KI + + K I N I+++++ ++ K+ Sbjct: 43 LKNASISLGLFSEGKIYDLVDFDEWSKSEKEEFYKIEFPDENVIVLVRTEKAIQKDL-KD 101 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + +K + D + I +S + IS+E LL +G D Sbjct: 102 KVIVQNFDKPKD------WEDE--KWLQFIMDSAKLIGVEISQEIAHELLEIVGPDEDTI 153 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +EL+K+ Y L I + ++DI V ++E +G++ +A F ++++ Sbjct: 154 ISELEKIKIYSLGKPHI--EDIEDITYKRTVSKLDEFAYLLSEGRLDDA-KNLIFEISNE 210 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNI 273 +L+ + F L + E + Sbjct: 211 YEPVFILYALSKHFIELLNLIATVERKHK 239 >gi|257068896|ref|YP_003155151.1| DNA polymerase III, delta subunit [Brachybacterium faecium DSM 4810] gi|256559714|gb|ACU85561.1| DNA polymerase III, delta subunit [Brachybacterium faecium DSM 4810] Length = 328 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 101/327 (30%), Gaps = 29/327 (8%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M+ +E H + + +G++ LI + Q + ++ ++ L+ Sbjct: 1 MSDVEWHSVALAP---------IVLVHGTET-LIADRAVQRLRGLAREADPSVAVHELSG 50 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSN 119 + T ++ S SLF + + +L+ L + ++ L + + + +++ Sbjct: 51 DAL--GPGTL-GQVASPSLFGEPRFVLVPELQAAPDSLVGELLDYLKTPEQDVTLVLVHR 107 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + L +K + + Q+ I EA L+ G Sbjct: 108 GGNRGKKLLDALKKAGVPRVDASPVKRAGDKQTFVAAEFARAQRRIQPEALIALVDAFGT 167 Query: 180 DR----IASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 D SR ++ + E ++ V + + +A I G+ A+ Sbjct: 168 DLAELAAISRQLIEDTTPEPGEQPAQVSVADVHALTAGRVESTAFAVADAAIAGREQEAL 227 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294 L + ++ K + L K+ + + ++ L Sbjct: 228 QLLQQAQLAGADPVPIVAAIASKMRSLAKV--------TAPGAGPRSLGMPDWMLR--NL 277 Query: 295 QESLRIWNKNLVRETLHKIDHRIHLAR 321 R WN + + + H + Sbjct: 278 SREARNWNDRSLARAIEAVARADHEVK 304 >gi|306822686|ref|ZP_07456064.1| DNA-directed DNA polymerase III delta subunit [Bifidobacterium dentium ATCC 27679] gi|304554231|gb|EFM42140.1| DNA-directed DNA polymerase III delta subunit [Bifidobacterium dentium ATCC 27679] Length = 342 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 113/344 (32%), Gaps = 27/344 (7%) Query: 14 TKNLFLSHFVFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 K + I +G D L + + ++ L+ L+A+ Sbjct: 16 PKTSATNTPFHIVFGGDSYLNEQTVRDQCVAAQRKY-----PDAELIELDAMGADHYA-- 68 Query: 70 FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---IIKNICNHIIII--KSNEIKK 123 ++E S SL S + I+ I NL ++K+ D + E K+ + I+I +K Sbjct: 69 -FDEAVSPSLLSDRAIVKIVNLQGADEKLGDAMVEYCRQACKDPTDCSIVICQHEGGVKG 127 Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183 + ++ + + L ++ + + + A Q L+A LG Sbjct: 128 KRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNRRVDPMAAQQLVAVLGEKTGE 186 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 + +L + +D + V + + + + + G+ +AI+ + Sbjct: 187 LAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVADQAMAGRSADAIIAMRSAVEQ 245 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 + AL+ K + L K ++ I + E P L W Sbjct: 246 GIDPIALIGALAMKLRTLAKASAVR-------AGTISQAEAKTNPWALKNATRQLPGWTS 298 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + ++ + ++I I+Q N + Sbjct: 299 AGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGRINRS 342 >gi|72161227|ref|YP_288884.1| DNA polymerase III subunit delta [Thermobifida fusca YX] gi|71914959|gb|AAZ54861.1| DNA polymerase III, delta subunit [Thermobifida fusca YX] Length = 346 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 90/252 (35%), Gaps = 11/252 (4%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKI 130 E+ S SLF ++++++ + K + +K+ + ++++ + K L+ Sbjct: 79 EVTSPSLFGDRRVVVLRSAQDLTKEPAGVITDYVKDPVDDVVLVLVHAGGAKGKALLQAA 138 Query: 131 AEKFTSVLAISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + I C P + I+ + I+ +A Q LL +G D Sbjct: 139 LQAGAH--RIDCAKPTKASERIAFIKGEFDRAGRKITADAAQALLDAVGTDLREIAAACT 196 Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 +L + + + V + + ++G++ A+ + LA M Sbjct: 197 QLI--ADTEGRVDAEAVARYHRGKAEASGFTVADRAVEGRLAEALEQLRWSLAVGMAPVL 254 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + + L +++ +S ++ ++ + P K L++ R W V + Sbjct: 255 ITSALASAVRGLAV--VVQSSRGLSESELAKQAKVP--PWKLRTLRQQARGWTPRGVAQA 310 Query: 310 LHKIDHRIHLAR 321 + + L + Sbjct: 311 MRVVAETDALVK 322 >gi|317182496|dbj|BAJ60280.1| DNA polymerase III subunit delta [Helicobacter pylori F57] Length = 340 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDA 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D I I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAICTRFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|33519774|ref|NP_878606.1| DNA polymerase III, delta subunit [Candidatus Blochmannia floridanus] gi|33504119|emb|CAD83381.1| DNA polymerase III, delta subunit [Candidatus Blochmannia floridanus] Length = 344 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 120/313 (38%), Gaps = 18/313 (5%) Query: 20 SHFVFIFYGSDKGLIFE-LINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNEINST 77 + F++I +G+D LI + IN + D F + + + + +T Sbjct: 17 TKFIYILFGNDFYLIQDCHINILNTIKEQSLSIDHFRI----GSSVCFDWDKVFQLCQTT 72 Query: 78 SLFSKKKIILIENLST------EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 LFS ++I+ ++ +K + + + + ++I S + + T K+ Sbjct: 73 HLFSTQQILSLQFPKNYPSTYFDKNIPSLISTLTYNKLLFILLIHTSLPMTQYQTWIKLF 132 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 +K + + ++C L +++ + ++ A Q+L G+ I + LQ L Sbjct: 133 DK--TGILVNCNTLEYTRLEKWVKKQSQLMNLTLENLACQLLCYYYEGNIILLQQILQHL 190 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 S D I+ +K+II D+ + I + + GK A + + + LL Sbjct: 191 SL-IYPDKKISFDRLKNIITDSACFNVNHWIESILLGKKKRANRILEQLKYTNDNLQTLL 249 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310 + ++ ++ +I + +K N+ +R +L + +R N + + L Sbjct: 250 YKIQREMLVIIQIKYNIIFHGKMLYTLFKKY--NVYTQYRRMLLSQVIRRLNLTQLNKIL 307 Query: 311 HKIDHRIHLARKK 323 + K Sbjct: 308 ELLVLMELQYHKN 320 >gi|28493348|ref|NP_787509.1| DNA polymerase III delta subunit [Tropheryma whipplei str. Twist] gi|28572542|ref|NP_789322.1| hypothetical protein TW389 [Tropheryma whipplei TW08/27] gi|28410674|emb|CAD67060.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476389|gb|AAO44478.1| DNA polymerase III delta subunit [Tropheryma whipplei str. Twist] Length = 309 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 112/336 (33%), Gaps = 47/336 (13%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + E I +K I+ + P V+ + S SL Sbjct: 5 PLVLLSGKCEYSANEAIASIRKKITDSLSAPEVHVIYADNYSAGELHRLA----SPSLLF 60 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 ++++++ + LD I + ++ KS K R + E + Sbjct: 61 SPRLVIVKQVEECNDIFLDEAMSYIQDPFKDTCVVFRHKSGIRGK----RLLGELRNIGV 116 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197 I+C PD + + +++I++ A +L+ S +++ +L+ +C + Sbjct: 117 EIAC-PDLTPS--RFVSDFFKKEKRNITQAAINLLVE--------SFDDIPELAQFCKQI 165 Query: 198 ----------DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 I+E + + + +++A + G ++L L + Sbjct: 166 ISDTKGTISAKGTISECEIAFLCWSRPGASVFRVVDAAMNGDEAATVLLLSRLLTEGGSA 225 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L+ + +LL K+ K+ + ++ + K + L W + Sbjct: 226 IPLVAAASARLRLLVKVKYGKKVTAAPWQIALAK--------------KQLAPWTNSSFM 271 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + ++ + IA++A Sbjct: 272 SCILALHAADRALKSTAGNPNYLVEHAMRLIARSAR 307 >gi|208435142|ref|YP_002266808.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori G27] gi|208433071|gb|ACI27942.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori G27] Length = 335 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 95/279 (34%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 11 KAVFLYGEFDFFIHYYIQTISSLFKRNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 67 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129 +++++ + + KK + + + + N +II + ++ K ++ + K Sbjct: 68 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 127 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + +K + + + + ++E IS L D S N Sbjct: 128 LFQKSPLKDEAICVRFFMPKTWESLKFLQERANALHLDISGHLLNTLFETNNEDLSVSFN 187 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 188 DLDKLAVL---NTPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 242 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 243 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 281 >gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli 95/1000] gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli 95/1000] Length = 521 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 18/233 (7%) Query: 45 ISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCL 101 I P ++ ++ + +NI T + + + K K+ +I+ + + L Sbjct: 82 TQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKVYIIDEVHQITNEAFNAL 141 Query: 102 EEIIIKNICNHIIIIKSNEIKK-----NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156 + + + + + I+ + E + + ++ K + L +++ Sbjct: 142 LKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYIFKSLGI----------EDLEKILKG 191 Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L + EA ++ G S L+K+ +Y + IT V ++ + Sbjct: 192 ILDKENIAYDDEAIFLIAKQARGSVRDSETILEKMIAYTADKKHITSGDVIAVVGGNNFS 251 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 ++++ + I N + ++ ++ +++ I + Sbjct: 252 FVKDFFDVMISKDKKNYFQFVKKLFEESVDPRTFINNLIEYMRVVLMIKSGID 304 >gi|315504210|ref|YP_004083097.1| DNA polymerase iii, delta subunit [Micromonospora sp. L5] gi|315410829|gb|ADU08946.1| DNA polymerase III, delta subunit [Micromonospora sp. L5] Length = 326 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 84/297 (28%), Gaps = 24/297 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79 + + G ++ L + + D ++ E Q T E+ S SL Sbjct: 11 PIVLVLGDEELLATRAVTEAVARAREVDPD------VDVREYQAGTLTVGEIAEMLSPSL 64 Query: 80 FSKKKIILIENL-STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKF 134 F ++++++ + K + L + ++++ K LR Sbjct: 65 FGGRRVLVLRSGQDARKDLSTALLAYAKNPDPDVQLVVLHLGGAKGKAFADGLRAAGATV 124 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + + + + +A L+A +G D +L Sbjct: 125 VPAVKLK----GDRERAAFVRDEIRRIGGKCTPDAADALVAAVGNDMRELAAACSQLV-- 178 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D I V + + +AT+ G + A+ + L + + Sbjct: 179 ADTDGRIGADTVARYYRGRAEVTGFTVADATMVGDVPGALEALRWALHVGVDPVPIADAL 238 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + + S ++ + + R W + E + Sbjct: 239 A---DGVRTVARVAAAGRSSAFQLAKTLGMPA-WKIEKAQVRA-RGWTPEGLVEAMR 290 >gi|317178459|dbj|BAJ56247.1| DNA polymerase III subunit delta [Helicobacter pylori F30] Length = 340 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKTWESLKFLQERANFLHLDISGHLLNALFETNNEDLSV 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|282880248|ref|ZP_06288965.1| DNA polymerase III, delta subunit [Prevotella timonensis CRIS 5C-B1] gi|281305908|gb|EFA97951.1| DNA polymerase III, delta subunit [Prevotella timonensis CRIS 5C-B1] Length = 342 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 93/259 (35%), Gaps = 6/259 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++I G + I ++ + +++ F+ ++ ++ N + + + + Sbjct: 25 PIYILMGDESYYIDKIADYIAEHVLQPEQRDFNQNIIFGADV--NAAQIIDLSKGYPMMA 82 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 ++++++ K + + + + + + I+++ ++ R I + + Sbjct: 83 DYRVVIVKEAQNLKD-TELIAKYLENPVRSTILVLCHKNGTIDSRKRLIKKADALGIVFE 141 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLEDIL 200 + L + I L +I ++ ++ ++G D + L K L S Sbjct: 142 SKKMRESDLPNFILSYLKNKNIAIDFKSSVMIADHVGADLNRLISVLDKVLISLPENVRE 201 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKF 258 I ++ I + E+ A I I+ A + +F + ++ L F Sbjct: 202 IDPTLIEKQIGVSKDFNAFELRAALINRDIFKANQIIKYFDNNPKAGSIYSFLPLLFNYF 261 Query: 259 QLLEKIHIIKECSNISFEK 277 Q L + ++ + + Sbjct: 262 QNLMIAYYAPSKTDNAVAQ 280 >gi|302869315|ref|YP_003837952.1| DNA polymerase III subunit delta [Micromonospora aurantiaca ATCC 27029] gi|302572174|gb|ADL48376.1| DNA polymerase III, delta subunit [Micromonospora aurantiaca ATCC 27029] Length = 326 Score = 54.6 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 84/297 (28%), Gaps = 24/297 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79 + + G ++ L + + D ++ E Q T E+ S SL Sbjct: 11 PIVLVLGDEELLATRAVTEAVARAREVDPD------VDVREYQAGTLTVGEIAEMLSPSL 64 Query: 80 FSKKKIILIENL-STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKF 134 F ++++++ + K + L + ++++ K LR Sbjct: 65 FGGRRVLVLRSGQDARKDLSTALLAYAKNPDPDVQLVVLHLGGAKGKAFADGLRAAGATV 124 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + + + + +A L+A +G D +L Sbjct: 125 VPAVKLK----GDRERAAFVRDEIRRIGGKCTPDAADALVAAVGNDMRELAAACSQLV-- 178 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D I V + + +AT+ G + A+ + L + + Sbjct: 179 ADTDGRIGADTVARYYRGRAEVTGFTVADATMVGDVPGALEALRWALHVGVDPVPIADAL 238 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + + + S ++ + + R W + E + Sbjct: 239 A---DGVRTVARVAAAGRGSAFQLAKTLGMPA-WKIEKAQVRA-RGWTPEGLVEAMR 290 >gi|184200955|ref|YP_001855162.1| DNA polymerase III delta subunit [Kocuria rhizophila DC2201] gi|183581185|dbj|BAG29656.1| DNA polymerase III delta subunit [Kocuria rhizophila DC2201] Length = 337 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 16/302 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + GSD+ ++ + + I S V + + S SLF Sbjct: 27 PLVLASGSDEYILQRIRETLRDTIRAERG---SCEVTDIAAGDYEPGQLAV-VTSPSLFD 82 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K++ ++ L+ E + D L + + ++ S + L + EK + Sbjct: 83 DPKLVCVQELAGMNEHLLADALAYVANPDPDVTVLWQHSGGNRGKKLLDALKEKALVLDC 142 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 D + K I +A + L A +G +L + Sbjct: 143 APPKSD--RDKSSFVLGEFRAQNKRIEPDAARALAAAVGTSTAELAAACAQLI--ADGPV 198 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + + V+ + + +A + G A+ L + + ++ K + Sbjct: 199 TVDLELVEKYYGGRVEVTAFRVADAAVAGNAEQALKLWRQAVDVGVDPVPMVATLGSKMR 258 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 L+ + + + P + Q R + V L I Sbjct: 259 LIALTAGSRGGAGQIARDVGAA------PWQVERAQNEARRFTAQDVTRALQAIAEADAQ 312 Query: 320 AR 321 + Sbjct: 313 VK 314 >gi|317177989|dbj|BAJ55778.1| DNA polymerase III subunit delta [Helicobacter pylori F16] Length = 340 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDV 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSV 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|149924601|ref|ZP_01912956.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] gi|149814526|gb|EDM74111.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica SIR-1] Length = 747 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 38/329 (11%), Positives = 114/329 (34%), Gaps = 42/329 (12%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNI 67 + K+T L+ + +G E NQ + I ++ ++ +I Sbjct: 49 LGKTTAARILAKCLVCEHGPTP----EPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDI 104 Query: 68 STFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNE------ 120 + ++++ +++KI +I+ + + + L + + + + + + + Sbjct: 105 RSLRDQVHYLPQIARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLP 164 Query: 121 --IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + + + L + V A L+ ++ L ++ E ++A G Sbjct: 165 TILSRVSRL-----DYRRVRA--------ATLVPYLQFILEQEGFAVEPEGL-YVIARCG 210 Query: 179 -GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G S L K+ ++ + IT + V ++ + E++ A + + + Sbjct: 211 DGSVRDSLTLLDKVIAFAHDPKAITGEEVLTVLGQASRYAVAELVQAILDRDAASVLQRF 270 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKI------HIIKECSNISFEKIIQKTE---KNI-- 286 + +S L LQ + L + + + ++ FE++ ++ + Sbjct: 271 EQITSSGSDLMQLAVAILQHLRDLTVLSLTKSRAALLDMNDDLFEQLQRQAGATSPTVVA 330 Query: 287 -IPMKRNILQESLRIWNKNLVRETLHKID 314 + + +S+ + + ++ Sbjct: 331 QHFDRFARVVDSIEHSRVPRLVIEMGLLE 359 >gi|324993345|gb|EGC25265.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK405] gi|324995344|gb|EGC27256.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK678] gi|327461618|gb|EGF07949.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK1] gi|327489476|gb|EGF21269.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis SK1058] Length = 348 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 31/275 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80 I G D G L QF + I D F + N +++ + + S F Sbjct: 20 ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72 Query: 81 SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + + L E + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + + L + + A LL G +E+ K Sbjct: 133 LKRDGKI--FEATELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186 Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L+ E I + + + I T I + +Q KI A L Sbjct: 187 NLAFLKGYKESGQIGLEDIVEAIPKTLQDNIFNLTQLILQQKIDEARSLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F++ ++ I+ E + + +I+ Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280 >gi|26553497|ref|NP_757431.1| hypothetical protein MYPE450 [Mycoplasma penetrans HF-2] gi|26453503|dbj|BAC43835.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 312 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 22/252 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKN------ISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 + + +G D GL+ E +++ N + D F + + + N ++S Sbjct: 1 MILIHGEDIGLLEEKVSELTNNKFTKIIFDSNFDDIF--LRFTQRNLFDDFDLENNHVDS 58 Query: 77 TSL--FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + KKI+ KK+L+ L+ + II + IK+ + + K Sbjct: 59 EKFLIYDFKKILSNSKTEENKKILEMLQFLTDSKKE----IIFLSNIKEPSKVYSKFFKV 114 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ + NK+ + + + L S+ + + L+ L D + +NE++KLS Sbjct: 115 MNIKKL-----NKLTMKNYTLKLLKQNNLSLKQNEFEYLIDCLQPDSLLIKNEIEKLSLV 169 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + II + E+I+ + + SK+ + + Sbjct: 170 T---ETLNMDTITKIISNDISKNTFELIDNFFNRRYEKIVKQIIALENSKIDFTEIFNIM 226 Query: 255 LQKFQLLEKIHI 266 + + L+ + Sbjct: 227 VSQLFSLKLYRL 238 >gi|146321398|ref|YP_001201109.1| DNA polymerase III subunit delta [Streptococcus suis 98HAH33] gi|253752238|ref|YP_003025379.1| DNA polymerase III delta subunit [Streptococcus suis SC84] gi|253754064|ref|YP_003027205.1| DNA polymerase III delta subunit [Streptococcus suis P1/7] gi|253755998|ref|YP_003029138.1| DNA polymerase III delta subunit [Streptococcus suis BM407] gi|145692204|gb|ABP92709.1| DNA polymerase III delta subunit [Streptococcus suis 98HAH33] gi|251816527|emb|CAZ52163.1| putative DNA polymerase III delta subunit [Streptococcus suis SC84] gi|251818462|emb|CAZ56291.1| putative DNA polymerase III delta subunit [Streptococcus suis BM407] gi|251820310|emb|CAR46822.1| putative DNA polymerase III delta subunit [Streptococcus suis P1/7] gi|292558829|gb|ADE31830.1| DNA polymerase III delta subunit [Streptococcus suis GZ1] gi|319758627|gb|ADV70569.1| DNA polymerase III subunit delta [Streptococcus suis JS14] Length = 343 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 25/272 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 + G D G + + + D F + + ++ + + S F Sbjct: 20 VLCGEDIGQYQIAKDLLLRKLHFDAADLGFAYFDMSEADYHQVDLD-------LVSLPFF 72 Query: 81 SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 S +K++++ +L+T+KK L E + + ++I + ++ L K+ Sbjct: 73 SDEKVVILDYFADLTTDKKRHLTDDELKQFEAYLENPVETTRLVILAPGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ L + P ++ L + ++ ++ + E Q LL D L Sbjct: 133 LKRD--GLVLEANPLKEMDLKNHFQKEIMRLGLQMGGEVFQYLLEKSNFDFAEISKNLAF 190 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L SY I + I T I ++ +Q K+ +A L L Sbjct: 191 LQSYK-GKETIEISDIDAAIPKTLQDNIFDLTQLILQSKVDDARNLVCDLRLQGEEEVKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 + L +F+ ++ I+ E ++I+ + Sbjct: 250 IAIMLTQFRTYLQVQILLE-QGRGEQQIVAEL 280 >gi|228470589|ref|ZP_04055446.1| DNA polymerase III, delta subunit [Porphyromonas uenonis 60-3] gi|228307716|gb|EEK16692.1| DNA polymerase III, delta subunit [Porphyromonas uenonis 60-3] Length = 349 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 32/279 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + YG + I L +N LVV E + + S+F+ Sbjct: 19 PLVLGYGEESYYINRLEELVVENYIPKEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++I++ + KK ++ K +I + + TL + A Sbjct: 77 PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129 Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183 N L + + L ++ +A L+ +G D Sbjct: 130 --KKNAQALKSQVALIESAPVRRDNELREAMIQMAKGLDLELAPQAISTLIERVGYDLET 187 Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241 +ELQKLS L++ V+ ++ + +++NA + + A+ +A Sbjct: 188 LYSELQKLSIPAKGAGGLVSRAMVQQVVSKSRKYGPYDLLNAVQRRRDDEALQIALAMAE 247 Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 + P ++ F L H + S + ++ + Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286 >gi|15645861|ref|NP_208039.1| DNA polymerase III subunit delta [Helicobacter pylori 26695] gi|7674418|sp|O25842|Y1247_HELPY RecName: Full=Protein HP_1247 gi|2314419|gb|AAD08299.1| predicted coding region HP1247 [Helicobacter pylori 26695] Length = 340 Score = 54.2 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129 +++++ + + KK + + + + N +II + ++ K ++ + K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLGVSFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K +A+ + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|262038364|ref|ZP_06011741.1| DNA polymerase III, delta subunit family [Leptotrichia goodfellowii F0264] gi|261747582|gb|EEY35044.1| DNA polymerase III, delta subunit family [Leptotrichia goodfellowii F0264] Length = 327 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 11/180 (6%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIK 122 K F +++ S+FS +++I++ K + L+ I +I III + K Sbjct: 39 KEEEKFLEKVSFNSIFSTEELIVLRQAEKLKDLEKTLDYIANLDIVGKEIIIDYFKEDGK 98 Query: 123 KNNTLRKIAEKFTSVLAISCY---PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 L K E+ + Y ++ + I++ L IS++ +LL +G Sbjct: 99 TGVKLSKKLEELKKNGKLEVYLFPKEDDGEIKKYIKKELG-----ISEKDTAMLLEMIGN 153 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D +NE++K+ Y L Q +K I+ I E ++ + K I + Sbjct: 154 DPFKVKNEVEKIKIY-LNGDSFNMQEMKKIVSVEKEYRIYETVDKILNNKAAEVIDYLEK 212 >gi|258651779|ref|YP_003200935.1| DNA polymerase III subunit delta [Nakamurella multipartita DSM 44233] gi|258555004|gb|ACV77946.1| DNA polymerase III, delta subunit [Nakamurella multipartita DSM 44233] Length = 329 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 31/331 (9%), Positives = 98/331 (29%), Gaps = 23/331 (6%) Query: 22 FVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + G ++ L+ + I + + + F + + + S Sbjct: 16 PLVLLTGDEQLLVDRAISRATAAARRIEAGAE------RRDGVAAGLTVGEFSD-LVAPS 68 Query: 79 LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LF++ ++++I K + L + ++++ +N + + K Sbjct: 69 LFAEPRVVVIRGAHEAGKDLAAALIGYTKDPVEGVWLVVQHAGGARNKAIGEALTKA-GA 127 Query: 138 LAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 ++C + +D + + + + A L+ +G D +L Sbjct: 128 TVVTCNKITRLNERIDFVRAEIRRAGGTTNPAAVTALVEAVGSDLRELAAAADQLV--AD 185 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + EQ V+ + + +AT+ G + A+ + L + + Sbjct: 186 TGGTVDEQAVRRYHRGRAEVTGFTVSDATMSGDLAGALESLRWALGVGVAPVLVADALA- 244 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + + + + I + + W+ + + + + Sbjct: 245 --DGVRTVAKVSGAKGGNSYAIASALGMPPWKVDRARGMARG---WSTDGLVGGMAIVAE 299 Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + + ++ + A K Sbjct: 300 LNAAVKGAAVDVEYALERAVIDL-VAARKRR 329 >gi|251793864|ref|YP_003008596.1| DNA polymerase III subunit delta [Aggregatibacter aphrophilus NJ8700] gi|247535263|gb|ACS98509.1| DNA polymerase III, delta subunit [Aggregatibacter aphrophilus NJ8700] Length = 344 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 112/312 (35%), Gaps = 16/312 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G D L+ E + ++ D ++ +N+ + + + + S LF Sbjct: 20 LYFLAGEDPLLLEESQDAIQQAEFQQGFDEKWVLEINSST---DWNALFERVQSMGLFFN 76 Query: 83 KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTSV 137 K++I+++ +L L E + + + I + ++ K + + Sbjct: 77 KQLIILDLPENLTALLQKNLLEFVSLLHPDVLPIFRLTKLTKTAENQPWFIAANQYAPEA 136 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCL 196 + ++C N L + SI ++A Q+L + + +A + LQ L Y Sbjct: 137 VLVNCQTPNVEQLPRWVSNRAKSLGLSIDEDAVQLLCYSYENNLLALKQALQLLDLLYA- 195 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D ++ V ++ + V + ++A + GK A + + LL + Sbjct: 196 -DRKLSFARVNAVVEQSSVFTPFQWVDAILAGKGNRARRILIGLKDEDVQPIILLRTLQR 254 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311 L +I ++ + + + + + +R + + ++ + Sbjct: 255 DLMTLLEISKPEQPAKLDDPLPTVQLREQFDRLKVWQNRRLLFSQIIQRLTYRKLYLFFQ 314 Query: 312 KIDHRIHLARKK 323 ++ A+++ Sbjct: 315 QLADVERSAKQE 326 >gi|300778646|ref|ZP_07088504.1| DNA-directed DNA polymerase III delta subunit [Chryseobacterium gleum ATCC 35910] gi|300504156|gb|EFK35296.1| DNA-directed DNA polymerase III delta subunit [Chryseobacterium gleum ATCC 35910] Length = 345 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 99/303 (32%), Gaps = 20/303 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---- 77 ++ F+G + I + + N F+ V + T + E+ S Sbjct: 18 PIYFFHGEEAYFIDVAVKALEHNFLEEDEKAFNQTVTYGKD------TTYQEVLSLARQF 71 Query: 78 SLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 + K++I+++ + + LE + + + +++ K ++ + Sbjct: 72 PMMGDKQVIIVKEAQDLRFNEEENRILESYVENPVPSTVLVFAHKHKKLDSRKKAAKALD 131 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + +L I + + + + +L LG D NEL KL Sbjct: 132 KAKALFLSESVKESNLPKWISDECAKLKINTAPNISHLLAEYLGNDLSRIANELNKLKMI 191 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252 E ++ V++ I + I E+ A A +A F + P +L Sbjct: 192 LKEGEILDGTIVENHIGISKEYNIFELQKALGTKNANAAFKIAHFMGKNPKNNPFVMMLA 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 F + + + S + I + N + ++ + + R++ + Sbjct: 252 SLYNYFSNVIIYQTM---AGQSPQAIASQMGVNPYFI-KDYAESA-RLYPLKHATRVISI 306 Query: 313 IDH 315 + Sbjct: 307 LRE 309 >gi|67809793|gb|AAY81977.1| DNA polymerase III gamma and tau subunit [Wolbachia pipientis] Length = 446 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ + EIKK + I+ C + ++ + Sbjct: 86 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 134 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 135 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 193 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 194 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 252 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 N + K + I + Sbjct: 253 IDNAVTEHEKNRIKDLSIKRSLIFFSR 279 >gi|332674050|gb|AEE70867.1| DNA polymerase III, delta subunit [Helicobacter pylori 83] Length = 340 Score = 53.8 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLII---GLYNSKSDTTKYKYTSDT 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ + S D IH I +E IS L D Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|152992026|ref|YP_001357747.1| DNA polymerase III subunit delta [Sulfurovum sp. NBC37-1] gi|151423887|dbj|BAF71390.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 325 Score = 53.4 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 48/330 (14%), Positives = 112/330 (33%), Gaps = 17/330 (5%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 +F Q+ + L + +G + +++ + + S + L E Sbjct: 5 EFDQRLNQGLP---KAVLVFGEN----EYMMDHYVELYRTKLDAKESALNLYYDEWNFEQ 57 Query: 68 STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + N ++ TSLF +++++ + KK LD L + +N N+ + + K + Sbjct: 58 AK--NFLSQTSLFGGTNLVVVKHDKKIPKKELDALVALANRNSDNYFLYLYDGTAKDAKS 115 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 ++ + + + N + ++++ I A Q L+ L + N Sbjct: 116 MQSAFTDKKGGVWVRLFEANIREGVAILQQKAQRIGLDIDHYALQHLMLLLNNNIALCSN 175 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 EL KL+ +T + + ++ T L E+++ K A L Sbjct: 176 ELDKLAIL---RTPVTSKDIDRLVYSTAPLATEQLLIDLFNKKPITAT--ITKLLDLGEN 230 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 + LL + H + I + + Q +LR+ + Sbjct: 231 ENDLLRSTQFFVNQIFLFHAYIKLHGHVDSAAILGYKLPKQIEDQKA-QLALRV-KSASL 288 Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + +K ++ ++ +IL Sbjct: 289 LKIFEHLLESEIEMKKAPATQREVLLYSIL 318 >gi|313681802|ref|YP_004059540.1| DNA polymerase iii delta [Sulfuricurvum kujiense DSM 16994] gi|313154662|gb|ADR33340.1| DNA polymerase III delta [Sulfuricurvum kujiense DSM 16994] Length = 321 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 46/330 (13%), Positives = 107/330 (32%), Gaps = 26/330 (7%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 M E + +Q ++ ++ +G LI ++ + S++ L Sbjct: 1 MNRQELDRHLQNNSAPRAMA-----LFGESHFLIDRYAHRLSQIEGA------SVLSLYH 49 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 E N + ++ SLF + ++++++ K LD L E++ KN N I Sbjct: 50 DEYDFNTAKAH--LSQGSLFGDQNLLIVKHEKKLPKAELDTLVELVGKNSDNTFIYCYYG 107 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + K A K + ++ + ++ + + +A LL Sbjct: 108 DDVKGAD---TAFKGSHTGSVRFFHPFAAEARAIVMQEAQAIGVQLDNQAAFHLLDIHNN 164 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D + NEL KLS I + + + + + ++ I I+ K + Sbjct: 165 DLALACNELSKLSIL---GKPIGMKEIDEHVFGLSEIKLDHFIARVIEKK--EFLPSLRH 219 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESL 298 L S LL L + + ++ ++ + +R L + Sbjct: 220 LLESGENEIQLLTAISGFLTQLYLFNTAIKIHGVADSAMVLGYKLPGFVEKERAALSIKI 279 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 + + ++ + + ++ Sbjct: 280 ---SPEGYKRGINLLLDTELKMKSTGSPDQ 306 >gi|213422564|ref|ZP_03355629.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 149 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 2/149 (1%) Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLM 151 + + L + + ++I++ N++ K + +SC + L Sbjct: 1 PNAAMNEQLATLSELLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLP 60 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + + A Q+L G+ +A L++LS D +T V+ + Sbjct: 61 RWVAARAKAQNLQLDDAANQLLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVN 119 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFF 240 D ++A + GK A+ + Sbjct: 120 DAAHFTPFHWVDALLMGKSKRALHILQQL 148 >gi|159904314|ref|YP_001551658.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT 9211] gi|159889490|gb|ABX09704.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT 9211] Length = 335 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 118/302 (39%), Gaps = 31/302 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + +G D G +I K I +L L+ ++ + EI + S Sbjct: 2 PIHLIWGDDYGSSERVIENLIKEIIDPAWISVNLSRLDGKDLSQANQAL-EEIQTPPFGS 60 Query: 82 KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131 ++IL++ ++ LE + + +I+ + +K L+++ Sbjct: 61 GGRVILVKRSPFCNGCSAELASKLEISLKQIPLTTHLILNNTNKPDKRLKTTKLLQELIK 120 Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 EK + A+ + L L++++ + +EA +L+ ++G D + Sbjct: 121 SNQASEKKFLLPAVW----DGAGLKALVQKTAKELNLELEEEAILLLIESIGNDSTRLIS 176 Query: 187 ELQKLSS---------YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 EL+KL+ + + + I+ + V D+I + EI N ++ + AI Sbjct: 177 ELKKLTLLESTKNKNAHAHDILQISRETVHDLIQGISTNSL-EIGNCLLKSQWGEAIAKL 235 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297 D + + P+ ++ + + + ++++ I ++ + P + ++++ Sbjct: 236 DALIDNGEPALRIIATLTGQIRGWLWVSLLEQHGQKDVGFIAKQAGIS-NPKRIYVIRKQ 294 Query: 298 LR 299 ++ Sbjct: 295 IQ 296 >gi|317052107|ref|YP_004113223.1| DNA polymerase III subunits gamma and tau [Desulfurispirillum indicum S5] gi|316947191|gb|ADU66667.1| DNA polymerase III, subunits gamma and tau [Desulfurispirillum indicum S5] Length = 548 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 77/219 (35%), Gaps = 23/219 (10%) Query: 58 LNALEIQKNIST-------FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 L+ +EI + E++ + K+ +I+ ++ + + + + Sbjct: 88 LDVVEIDAASNRGIDSMKTLIEEVDYAPAMGQVKVYIIDEFHMLTREAFNAFLKTLEEPP 147 Query: 110 CNHIIIIKSNEIKKNNT-LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + ++ + ++ K N + ++ I + ++ + L + + Sbjct: 148 PHTVFVLATTDLHKVNPTILSRCQRHDF-RRIP-----RDEMVQALAHILGNEGIAFETD 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A QI+ G + + L ++ SYC E I+ V +++ + + A G Sbjct: 202 ALQIIATTSEGCMRDAESILDRVVSYCGE--RISAADVMELVGIATHGMVFGVFQAIAAG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + + L + + L QLLE ++ Sbjct: 260 DLPRILTLIEQANETGADMRQLCR------QLLETTRLV 292 >gi|225630794|ref|YP_002727585.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi] gi|225592775|gb|ACN95794.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi] Length = 533 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ + EIKK + I+ C + ++ + Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 N + K + I + Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324 >gi|42520868|ref|NP_966783.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410608|gb|AAS14717.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila melanogaster] Length = 533 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ + EIKK + I+ C + ++ + Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 N + K + I + Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324 >gi|283458048|ref|YP_003362659.1| DNA polymerase III subunit delta [Rothia mucilaginosa DY-18] gi|283134074|dbj|BAI64839.1| DNA polymerase III, delta subunit [Rothia mucilaginosa DY-18] Length = 347 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 105/322 (32%), Gaps = 21/322 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG ++ + ++ + H V +NA S SLF Sbjct: 38 PAVMLYGPEEYFASRAAARLRELFR-SIHPEVDRVQINAATYTAGELILH---ASPSLFG 93 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 KII +EN+++ + L + + ++I+ + + L + + + I Sbjct: 94 SAKIIEVENVASMSDEFLTDTLAYLNAPEPDIMLILNHSGGNRGKKLIDLV--RSQFVLI 151 Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197 +C + + Q+ I+ A +L A + A+ + Sbjct: 152 NCKALKTDREKSEFLAGEFAAAQRPITGGALALLTAAASDTAELAAACQQ-----LLSDV 206 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE+ V + + +A I G A+ L LA+ +L + Sbjct: 207 PGEITEEAVNRYYGGRTEVTAFRVSDAAISGNAPEALRLLRHSLATGTEPIPMLGALAMR 266 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + + ++H ++ +N ++ P + Q R + + + + Sbjct: 267 IRNIARVHHVRLSANELAREVGMA------PWQVEQAQRDGRRFTGAQLAHIVQLLADAD 320 Query: 318 HLARKKKYLEKNIIFQTILYIA 339 + + + Q +L IA Sbjct: 321 AQLKGESQDAVYAVEQAVLAIA 342 >gi|262283170|ref|ZP_06060937.1| DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA] gi|262261422|gb|EEY80121.1| DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA] Length = 345 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 55/364 (15%), Positives = 126/364 (34%), Gaps = 48/364 (13%) Query: 1 MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDP----FS 54 M IE+ KN+ LS+ + + G D G L Q K I D F Sbjct: 1 MLAIEA-------IKNIKLSNLPPLTVLTGDDLGQFELLKEQLLKQIEFNAADLNYALFD 53 Query: 55 LVVLNALEIQKNISTFWNEINSTSLFSKKKIILI-----------ENLSTEKKVLDCLEE 103 + + +++ + + S FS +KII++ NLS ++ L E Sbjct: 54 MKEADYQQVELD-------LVSLPFFSDEKIIILDHFIDITTAKKRNLSDDE--LKSFEA 104 Query: 104 IIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162 + + +I+ + ++ + K+ ++ + + L + Sbjct: 105 YLEHPVETTRLILFAEGKLDSKRRIVKLLKRDAEI--FEASEPKEQDLRSYFSKVAQTEN 162 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLE---DILITEQHVKDIICDTHVLYIE 219 + LL G +E+ K S+ D I + + + I T I Sbjct: 163 LQFAPTVFDQLLIKSG----FQFSEISKNLSFLKGYKPDGQIELEDITEAIPKTLQDNIF 218 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 ++ ++ ++ A L L+ L +F++ ++ I+ + + +I+ Sbjct: 219 DLTQLILKQRVDEARSLVSDLRLQGEDEIKLIAIMLGQFRIFTQVKILS-GNGRAESQIV 277 Query: 280 QK----TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 + + P + + R + + +++T+ + + + Y + + + Sbjct: 278 SDLSDYLGRKVNPYQVKFALKDARSLDLSFLKKTMTCLIETDYQIKSGLYEKDYLFDLAL 337 Query: 336 LYIA 339 L IA Sbjct: 338 LRIA 341 >gi|229820231|ref|YP_002881757.1| DNA polymerase III, delta subunit [Beutenbergia cavernae DSM 12333] gi|229566144|gb|ACQ79995.1| DNA polymerase III, delta subunit [Beutenbergia cavernae DSM 12333] Length = 334 Score = 53.4 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 103/324 (31%), Gaps = 23/324 (7%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G+++ L + + + + L+A + + S SLF Sbjct: 24 PVVLVRGTEELLGDRALTRLLEQAREQ-DPGVEVTRLDAAGYE--PGRL-GMLTSPSLFG 79 Query: 82 KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 +++ + I L E D L + +++ ++ L + + Sbjct: 80 ERRHVEILGLENLTEACASDVLAYVDDVAPDVTLVLRHGGGVRGKKVLDAV--TASGAPV 137 Query: 140 ISC----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 ++C Y +K + + + ++ + A Q L+ LG D +L Sbjct: 138 VACDALKYEKDK---VAFVTQEFRRTERRVQGAAVQALVDALGSDLRELAAACAQLV--A 192 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 IT V + + ++ + G A++L +A+ L+ Sbjct: 193 DTTGTITADVVDRYYGGRVEVTGFRVADSAVAGDAGGALLLLRHAIAAGTDPVPLVAALA 252 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 K + + K+ ++ + + + +R+ L W + + + Sbjct: 253 LKLRTMAKVAAVR-GRGPAALSELGLASWQVDRARRD-----LGGWTPEGLAAAISAVAT 306 Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339 + + + + +L IA Sbjct: 307 ADAEVKGESRSPAFAVERAVLRIA 330 >gi|317014638|gb|ADU82074.1| DNA polymerase III subunit delta [Helicobacter pylori Gambia94/24] Length = 340 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I + D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKGSNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129 +++++ + + KK + L ++ ++ +II K + T + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSDVIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E Q IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANALQLDISSHLLNALFETNNEDLGISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|50955101|ref|YP_062389.1| DNA polymerase III, delta subunit [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951583|gb|AAT89284.1| DNA polymerase III, delta subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 346 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 100/299 (33%), Gaps = 17/299 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G++ L + Q ++ + DP + ++ + + + S SLF Sbjct: 33 PVVLVSGTESFLADRAVRQLREALRAA--DP--SLEISDVSAADYAAGELLTLASPSLFG 88 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139 + ++I +E + L + + +++++ + ++ L I + + Sbjct: 89 EPRLIRVEAVERCSDAFLSETLSYLEEPAEGAVVVLRHAGGVRGKKLLDAIRSGTGNGVE 148 Query: 140 ISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + C + K + +SIS A + + + D Q+L Sbjct: 149 VVC-AELKKDAEKYEFAQAEFARAGRSISPGALRAVTSAFADDLAELAAACQQLL--SDS 205 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I E V + + + G+ A++ LAS ++ F K Sbjct: 206 AEQIVEATVDKYYSGRMETNAFHVADVALAGRYGEALVTMRHALASGADPVPMVAAFASK 265 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + K+ + S ++ + P + + + L+ W + + + + Sbjct: 266 IRTMAKLAGARGGSGQLAQQ------FGLAPWQVDRARRDLQGWAEEDLGRCIEVLAET 318 >gi|308183358|ref|YP_003927485.1| DNA polymerase III subunit delta [Helicobacter pylori PeCan4] gi|308065543|gb|ADO07435.1| DNA polymerase III subunit delta [Helicobacter pylori PeCan4] Length = 340 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCDNPDMETSFFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 V+ + S D IH I +E IS L D Sbjct: 130 VVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDVYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|296120960|ref|YP_003628738.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces limnophilus DSM 3776] Length = 682 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 16/195 (8%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N + + + + + EA +++ G S++ ++ +T Sbjct: 182 NIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVL--AFGHQHVTVAD 239 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V ++ + E++ A I A+ D + + AL + + L + Sbjct: 240 VHRLLGTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDL--MV 297 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR-IHLARK-- 322 I+ + + + ++ W + L + I +AR Sbjct: 298 TAAGVKGIALLGATESSR--------SRVETQAEAWGLKTISAALQILAEAKIKMARATW 349 Query: 323 -KKYLEKNIIFQTIL 336 + E ++ T+L Sbjct: 350 GRALTELALVRITLL 364 >gi|268679499|ref|YP_003303930.1| DNA polymerase III delta [Sulfurospirillum deleyianum DSM 6946] gi|268617530|gb|ACZ11895.1| DNA polymerase III delta [Sulfurospirillum deleyianum DSM 6946] Length = 328 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 12/257 (4%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG+ L + + + + V+ E + N ++ +SLF + Sbjct: 20 LLYGACHYQNNFLATEILRLLKVNPD---EKTVMYFDEYAFASAK--NFLSQSSLFGDRN 74 Query: 85 IILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 I +++ + + K L+ L ++ KN ++ I E KK + K+ EK + + Sbjct: 75 IFILKSDKTVPTKELEVLIDLCAKNDSSYFIYQYFGEDKKATPMSKLFEKKNEGAFVRLF 134 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + + L++ I + A Q L D NE +KL S + I Sbjct: 135 KADFNEALQLLQNHANALGLLIDRYALQHLYMIHMEDLSLCANECEKLLSL---NKEIHI 191 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQLLE 262 + ++ + ++ I ++ K + + + M +++ L Sbjct: 192 NDINTLVYGLGSVSMDRFIAKLLEKK--DIKEDFERLVEGDGMDEIRIINAIETYVSQLF 249 Query: 263 KIHIIKECSNISFEKII 279 H + K I Sbjct: 250 LFHSYVKLHGSFDAKAI 266 >gi|300361491|ref|ZP_07057668.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus gasseri JV-V03] gi|300354110|gb|EFJ69981.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus gasseri JV-V03] Length = 329 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 29/254 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80 + G D F + Y + L+ + + + + SLF Sbjct: 17 LLIQGPDSF--------FNDYLVRNYLNQKKFTDLDQVIVDCLEDGLDELMATLTESSLF 68 Query: 81 SKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNE---IKKNNTLRK 129 S KKI++++N KK ++ L +II I+ I + + K Sbjct: 69 SSKKIVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDIVAFVANYEKIDRRKKISK 128 Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + +V+ A+ Y + +I+ I+ A QIL+ A+ + Sbjct: 129 FLLEHVNVVETALKPYE-----VSGVIKAISKEEGYQITNMALQILIQRSDQVLDAALSN 183 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 KL + ED ITE + + I + I EI+ A A D L + Sbjct: 184 YLKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFNKNYQEATQRLDDHLREGASA 243 Query: 248 HALLHGFLQKFQLL 261 LL F + + L Sbjct: 244 IQLLAIFESQIEFL 257 >gi|300788523|ref|YP_003768814.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32] gi|299798037|gb|ADJ48412.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32] Length = 326 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 37/343 (10%), Positives = 102/343 (29%), Gaps = 27/343 (7%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELI--NQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71 T + + G ++ LI E + + L + + + Sbjct: 2 TAQATAPAPLQLVLGEEELLI-ERAVRETLAAARVMD-----ATAELTRVRVSDLTAPEL 55 Query: 72 NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTL 127 E+ S SLFS+ ++I++E+ +++ D + + ++++ K +L Sbjct: 56 AELVSPSLFSEGRVIVLESAQDISQELADAVAAYLKDPADGVVLVVVHTGGGRSKAGKSL 115 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 +K + + + + I LL +G D + Sbjct: 116 PTALKKAGAEITECPRLTKPAEREQFVRHEVRRVGGKIDPAGVAALLDAVGSDLRELSSA 175 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + + + G A+ + + +P Sbjct: 176 ATQLV--ADTGGTVDADAVRRYHRGRADVTGFAVAEKAVSGDRAAALESLRWAMQLGVPH 233 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 + + I + + ++ + +++ Q R WN + + Sbjct: 234 VLVADALA---DAVRTIARVSGAGRGNPNQLAGELGMPPWKIRKA--QGQSRGWNPDGLA 288 Query: 308 ETLH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + +++ + + + +L +A A K + Sbjct: 289 TAMRVVARLNAEVKGVAADPGYA---LERAVLEVA--AAKGDR 326 >gi|308062531|gb|ADO04419.1| DNA polymerase III subunit delta [Helicobacter pylori Cuz20] Length = 340 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSFFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISNHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K +A+ + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|261838570|gb|ACX98336.1| delta subunit of the DNA polymerase III holoenzyme [Helicobacter pylori 51] Length = 340 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 31/283 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDIETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDA 129 Query: 137 VLAI---SCYPDNK-----------IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 ++ S D L L +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFTPKAWESLKFL-QERANFLHLDISSHLLNALFETNNEDLS 188 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 189 VSFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLK 243 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 244 EGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|283456103|ref|YP_003360667.1| DNA polymerase III, subunit delta [Bifidobacterium dentium Bd1] gi|283102737|gb|ADB09843.1| DNA polymerase III, delta subunit [Bifidobacterium dentium Bd1] Length = 303 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 104/304 (34%), Gaps = 18/304 (5%) Query: 50 HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---I 105 + L+ L+A+ ++E S SL S + I+ I NL T++K+ D + E Sbjct: 12 YPDAELIELDAMGADHYA---FDEAVSPSLLSDRAIVKIVNLQGTDEKLGDAMVEYCRQA 68 Query: 106 IKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 K+ + I+I +K + ++ + + L ++ + + Sbjct: 69 CKDPTDCSIVICQHEGGVKGKRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNR 127 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 + A Q L+A LG + +L + +D + V + + + + Sbjct: 128 RVDPMAAQQLVAVLGEKTGELAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVAD 186 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + G+ +AI+ + + AL+ K + L K ++ I + E Sbjct: 187 QAMAGRSADAIIAMRSAVEQGIDPIALIGALAMKLRTLAKASAVR-------AGTISQAE 239 Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 P L W + + + ++ + ++I I+Q Sbjct: 240 AKTNPWALKNATRQLPGWTSAGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGR 299 Query: 344 KNNN 347 N + Sbjct: 300 INRS 303 >gi|197294282|ref|YP_001798823.1| DNA polymerase III, delta subunit [Candidatus Phytoplasma australiense] gi|171853609|emb|CAM11480.1| DNA polymerase III, delta subunit [Candidatus Phytoplasma australiense] Length = 320 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 17/258 (6%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + +++ G + + + I + D V++ + S E+ L Sbjct: 3 KNNIYLISGKQRFFLEQKIKKLIITFQNQSLD-----VVHYRMQKDADSDLEKELKVIPL 57 Query: 80 FSKKKIILIEN----LSTEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRKIAEK 133 K+I+++ L +KK L L +++ ++ N ++ +K Sbjct: 58 L--HKVIIVDQSEILLQKKKKELTFLNSYFQNPSPKISLYFFVENG-LENNENF-QLFQK 113 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + S I N + ES I K+A LL + E++KL Sbjct: 114 YCSCETIVSLEKN--DFFTYVAESFEKEGFQIEKKAIYHLLKETNYNLFFLHQEIKKLKL 171 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 LE+ IT V+ + + +IN + A L F K + +L+ Sbjct: 172 CQLEEKTITYPLVEKLNFFQTEDNLFHLINLFLNNNRIGAYELYQKFKKHKNNAFQILYQ 231 Query: 254 FLQKFQLLEKIHIIKECS 271 K + L + + + + Sbjct: 232 LTNKIKALLLVKNMVKQN 249 >gi|326381589|ref|ZP_08203283.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL B-59395] gi|326199836|gb|EGD57016.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 81/242 (33%), Gaps = 14/242 (5%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLR-- 128 E+ S SLF++++I+++++ + K L K++ ++++ + ++ + Sbjct: 30 ELLSPSLFAEERIVVVQSAADAGKEPAALITATAKSLPEGITLMVVHTGGGRQKAMVGEL 89 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K A A +P + + +S E +++ +G D Sbjct: 90 KKAGAQEFACAAPKWPSERAD---FVRSEFRALGAKVSAEVVELVTEMVGSDLRELSAAC 146 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 ++L + + V+ + E+ + + G + A+ + Sbjct: 147 RQLVADTGNK--VDADAVRLYYTGRPEVTGFEVADKAVTGDLAGALESLAWAEHHGTARV 204 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 L + + ++ + + + P + +Q R W+ + E Sbjct: 205 LLADALAEAVHAIARVRSM---GGADKYTLASELGMP--PGRVGKIQTQARAWDSTSIGE 259 Query: 309 TL 310 L Sbjct: 260 AL 261 >gi|255327137|ref|ZP_05368212.1| DNA polymerase III, delta subunit [Rothia mucilaginosa ATCC 25296] gi|255295755|gb|EET75097.1| DNA polymerase III, delta subunit [Rothia mucilaginosa ATCC 25296] Length = 344 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 105/322 (32%), Gaps = 21/322 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + YG ++ + ++ + H V +NA S SLF Sbjct: 35 PAVMLYGPEEYFASRAAARLRELFR-SIHPEVDRVQINAATYTAGELILH---ASPSLFG 90 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 KII +EN+++ + L + + ++I+ + + L + + + I Sbjct: 91 SAKIIEVENVASMSDEFLTDTLAYLNAPEPDIMLILNHSGGNRGKKLIDLV--RSQFVLI 148 Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197 +C + + Q+ I+ A +L A + A+ + Sbjct: 149 NCKALKTDREKSEFLAGEFAASQRPITGGALALLTAAASDTAELAAACQQ-----LLSDV 203 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ITE+ V + + +A I G A+ L LA+ +L + Sbjct: 204 PGEITEETVNRYYGGRTEVTAFRVSDAAISGNAPEALRLLRHSLATGTEPIPMLGALAMR 263 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + + ++H ++ +N ++ P + Q R + + + + Sbjct: 264 IRNIARVHHVRMSANELAREVGMS------PWQVEQAQRDGRRFTGAQLAHIVQLLADAD 317 Query: 318 HLARKKKYLEKNIIFQTILYIA 339 + + + Q +L IA Sbjct: 318 AQLKGESQDAVYAVEQAVLAIA 339 >gi|302528889|ref|ZP_07281231.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4] gi|302437784|gb|EFL09600.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4] Length = 323 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 35/330 (10%), Positives = 101/330 (30%), Gaps = 17/330 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G ++ LI E + + + L ++ E+ S SLF+ Sbjct: 7 PLHLVTGEEELLI-ERAVRASLDAARAADPTADLTRTRVSDLT--PPALA-ELVSPSLFA 62 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137 + ++I++E+ +++ D + + ++++ K L +K + Sbjct: 63 EGRVIVLESAQDISQELSDAVLAYVKAPADGIVLVVVHSGGGRSKAAKALPGALKKAGAE 122 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + + I LL ++G D + +L Sbjct: 123 ITECPKLTKPAEREAFVRNEVRRAGGKIDGAGLMALLDSVGSDLRELSSAATQLV--ADT 180 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 ++ EQ V+ + + + G A+ + + +P + Sbjct: 181 GGVVDEQAVRRYHTGRADVTGFAVAEKAVAGDRAAAMESLQWAMQLGVPHVLVADALA-- 238 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + I + + ++ + +++ Q R W ++ + + + Sbjct: 239 -DAVRTIARVSAAGRGNPNQMAGELGMPPWKIRKA--QGQSRGWGQDGLATAMRVVARLN 295 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + +L + A K + Sbjct: 296 AEVKGAAADANYALQRAVLDV--VAAKGDR 323 >gi|330833168|ref|YP_004401993.1| DNA polymerase III subunit delta [Streptococcus suis ST3] gi|329307391|gb|AEB81807.1| DNA polymerase III subunit delta [Streptococcus suis ST3] Length = 343 Score = 52.7 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 98/276 (35%), Gaps = 33/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 + G D G + + + D F + + ++ + + S F Sbjct: 20 VLCGEDIGQYQIAKDLLLRKLDFDAADLGFAYFDMSEADYHQVDLD-------LVSLPFF 72 Query: 81 SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 S +K++++ +L+T+KK L E + + ++I + ++ L K+ Sbjct: 73 SDEKVVILDYFADLTTDKKRHLTDDELKQFEVYLENPVETTCLVILAPGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ L + P ++ L + ++ ++ + E Q LL D E+ K Sbjct: 133 LKRD--GLVLEANPLKEMDLKNHFQKEIMRLGLQMGGEVFQYLLEKSNFDF----AEISK 186 Query: 191 ----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 L SY I + I T I ++ +Q K+ A L Sbjct: 187 NLVFLQSYK-GKETIEISDIDAAIPKTLQDNIFDLTQLILQSKVDEARNLVRDLRLQGEE 245 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+ ++ I+ E ++I+ + Sbjct: 246 EVKLIAIMLTQFRTYLQVQILLE-QGRGEQQIVAEL 280 >gi|116629808|ref|YP_814980.1| DNA polymerase III, delta subunit [Lactobacillus gasseri ATCC 33323] gi|238853439|ref|ZP_04643818.1| DNA polymerase III, delta subunit [Lactobacillus gasseri 202-4] gi|311110550|ref|ZP_07711947.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22] gi|116095390|gb|ABJ60542.1| DNA polymerase III, delta subunit [Lactobacillus gasseri ATCC 33323] gi|238834011|gb|EEQ26269.1| DNA polymerase III, delta subunit [Lactobacillus gasseri 202-4] gi|311065704|gb|EFQ46044.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22] Length = 329 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 18/212 (8%) Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHII 114 ++ + + +SLFS +K+++++N KK ++ L +II I Sbjct: 51 LEDGLDELMATLTESSLFSSQKMVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDI 110 Query: 115 IIKSNE---IKKNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 +I I + + K + +V+ ++ Y + +I+ I+ A Sbjct: 111 VIFVANYEKIDRRKKVSKFLLEHVNVVETSLKPYE-----VSGVIKAISKEEGYQITNMA 165 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 QIL+ A+ + KL + ED ITE + + I + I EI+ A Sbjct: 166 LQILMQRSDQVLDAALSNYLKLKNIVGEDKKITETLINENIDRSLSENIFEILTAAFNKN 225 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 A D L + LL F + + L Sbjct: 226 YQEATQRLDDHLREGASAIQLLAIFESQIEFL 257 >gi|58699909|ref|ZP_00374504.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] gi|58533574|gb|EAL57978.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia endosymbiont of Drosophila ananassae] Length = 396 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ + EIKK + I+ C + ++ + Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 N + K + I + Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324 >gi|24475504|dbj|BAC22717.1| dnaX [Wolbachia endosymbiont of Callosobruchus chinensis] Length = 516 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ EIKK + I+ C + ++ + Sbjct: 153 SAFNALLKTLEEPPSSVKFILAPPEIKK-----------IPITIIARCQRFDLHNIPVAK 201 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 202 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVIDI 260 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 261 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAIK-TANPLSIFEGLLQTIQLVCRFLITKE 319 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 N + K + + I + Sbjct: 320 IDNAVTEYEKNRIKDLSIKKSLIFFSR 346 >gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera] Length = 919 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 67/193 (34%), Gaps = 19/193 (9%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G + L++LS I+ V Sbjct: 444 DADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 500 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL+ + + Sbjct: 501 QELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMS---------QLATV 551 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 I + S++ ++ + + ++L + +R+ L + R Sbjct: 552 ITDILAGSYDFTKERLRRK-FFRR-----QALSKEDMEKLRQALKTLSEAEKQLRMSND- 604 Query: 327 EKNIIFQTILYIA 339 + + +L +A Sbjct: 605 KLTWLTAALLQLA 617 >gi|210135406|ref|YP_002301845.1| DNA polymerase III subunit delta [Helicobacter pylori P12] gi|210133374|gb|ACJ08365.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori P12] Length = 340 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I ++ D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKLSNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129 +++++ + + KK + L I+ ++ +II K + T + K Sbjct: 73 GSSLVILKLDFALHKKFKENDTNLFLKAIERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANFLHLDISSHLLNALFEINNEDLSISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFARIKTTGLMDAKEVLGYAPP 286 >gi|283783400|ref|YP_003374154.1| putative DNA polymerase III, delta subunit [Gardnerella vaginalis 409-05] gi|283441405|gb|ADB13871.1| putative DNA polymerase III, delta subunit [Gardnerella vaginalis 409-05] Length = 348 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 109/348 (31%), Gaps = 46/348 (13%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V + G D L ++ + + D ++ L+A + ++E SLF Sbjct: 13 PVTLVVGGDAYLNELNARTVREKVQESAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68 Query: 82 KKKIILIENLS-TEKKVLDCLEEIIIK-------------------------NICNHIII 115 I++I NL ++ ++D +E + + +I Sbjct: 69 DGTIVIINNLQQADESLVDAIENFCKQAQNSENNAQNSENNAQNSENSENFVDSSATWVI 128 Query: 116 IK-SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + +K + + ++ + + + + + L ++ +S+ +A Q L+ Sbjct: 129 ARHEGGLKGKSIITRLTKAGANTITVPDLKKDDAKLNFVMS-IFERHNRSVEPQAAQRLV 187 Query: 175 ANLGGDRIASRNELQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 + LG EL L S + +D IT V L + + Sbjct: 188 SVLGSKT----GELAALCSQLCFDYDDNPITLDIVDRY------LVADPQVTGFFVADKA 237 Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291 A LA++ + L K+ +I I I E + P Sbjct: 238 VAGHAGSAVLAARTAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWAL 296 Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + L WN V + L + + + + I+ IA Sbjct: 297 KMAMRQLAGWNSAGVSQCLQSLAWADEQCKGGSSDANYALEKCIMLIA 344 >gi|291302914|ref|YP_003514192.1| DNA polymerase III subunit delta [Stackebrandtia nassauensis DSM 44728] gi|290572134|gb|ADD45099.1| DNA polymerase III, delta subunit [Stackebrandtia nassauensis DSM 44728] Length = 319 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/320 (12%), Positives = 99/320 (30%), Gaps = 22/320 (6%) Query: 33 LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS 92 L+ E + + +A ++ + S +LF ++++EN Sbjct: 17 LLAERAVAAIVAEARQRDAGIQVHRADAGDLS--PGELTT-LTSPTLFGGGSVVVVENAQ 73 Query: 93 TEKK-VLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKFTSVLAISCYPDNK 147 KK + L + + ++++ + K +LRK + S I Sbjct: 74 DAKKELAAALNGYLDAPAADVEVVVVHAGGNKGKALAESLRKAGVEVISAAKIK----RA 129 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + ++E L + A + L+ +G D + +L + +T + Sbjct: 130 TDRANFVKEELRRLGARANAAAAEALITAVGHDLRELASACSQLVADTGGK--VTVDEIN 187 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + + +A + G A+ + L+ + + L + + K+ Sbjct: 188 KYYRGRAEVTGFAVADAAVTGDAQAALSGLRWALSVGVDAVPLADALATGVRNIAKVAGA 247 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327 +E K+ P + + ++ R W + + + Sbjct: 248 RESGYQLASKVGMA------PWQVDKAKQQGRGWTPEGLVAAMDVTAELNAAVKGGSEDR 301 Query: 328 KNIIFQTILYIAQTACKNNN 347 + + IL I A ++ Sbjct: 302 AYALERAILAIT--AARSGR 319 >gi|240170819|ref|ZP_04749478.1| hypothetical protein MkanA1_16007 [Mycobacterium kansasii ATCC 12478] Length = 327 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 81/253 (32%), Gaps = 27/253 (10%) Query: 73 EINSTSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TL 127 E+ S SLF+ ++I+++E + + V ++++ S + L Sbjct: 61 ELLSPSLFADERIVVLEAAAEAGKDAVAMIASTAADLPPGTVLVVVHSGGGRAKALAGQL 120 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + + I+ + +D + + I E LL +G +E Sbjct: 121 QSLGAQVHPCARITKLSER----LDFVRGEFRCLRVKIDDETVAALLDAVG-------SE 169 Query: 188 LQKLS-----SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 L++L+ + V+ + +I + + G + A + + Sbjct: 170 LRELAAACSQLVADTGGHVDVAAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMM 229 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 P L + + + + ++ + P + Q+ R W+ Sbjct: 230 RGEPLVVLADALAEAVHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARRWS 283 Query: 303 KNLVRETLHKIDH 315 ++ V + + Sbjct: 284 RDKVATAMKLVAE 296 >gi|237809564|ref|YP_002894004.1| DNA polymerase III, delta subunit [Tolumonas auensis DSM 9187] gi|237501825|gb|ACQ94418.1| DNA polymerase III, delta subunit [Tolumonas auensis DSM 9187] Length = 345 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 123/344 (35%), Gaps = 12/344 (3%) Query: 9 FIQKSTKNLFLSHFV-FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 F ++ + L ++ +G + E + Q + + +A E Sbjct: 4 FSEQLAEQLQAGLRACYLIFGDEPLQKMEALQQIRHVAREQGFTD--VYRFSASEEPLPW 61 Query: 68 STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 S SLFS ++II IE K+ + + E+ + + ++II + + + Sbjct: 62 DHIHACSQSLSLFSSRQIIEIELGDKLPKEWAERISELQQQLHPDLLLIILGPRLNSSQS 121 Query: 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 + I + + ++ I + L G+ +A+ Sbjct: 122 KSGWFTTLDKQGIYIPVALPDARYFPRWMKLRSQQNGLRIDNDGITFLCHAFEGNLLAAA 181 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 EL+KL+ +T ++ I +V + ++ ++GK A+ + + Sbjct: 182 QELEKLAL-LALPQPLTVAVLQHNITRHNVFDPFKWLDTLLEGKSQRALRMLAQLRDEGV 240 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 L + +LL + + ++ ++Q + I P ++ ++Q++++ + Sbjct: 241 EPGMLTWALAKDLELLWSLRLAQDA-RQPLTSLLQAAK--IWPSRQTLVQQAMQRLPADQ 297 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349 +R+ L + L R + + +Q + ++ + + Sbjct: 298 LRDMLRMMSE---LDRSNRTFDSATAWQWLQTLSLAFRGSTSLR 338 >gi|331695853|ref|YP_004332092.1| DNA polymerase III subunit delta [Pseudonocardia dioxanivorans CB1190] gi|326950542|gb|AEA24239.1| DNA polymerase III, delta subunit [Pseudonocardia dioxanivorans CB1190] Length = 342 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/310 (10%), Positives = 96/310 (30%), Gaps = 42/310 (13%) Query: 13 STKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72 + V + G ++ L+ E Q + + L E+ Sbjct: 20 PAASDGRPEPVNLVIGEEE-LLAERAVQEVVVRARAADPETEVRRLRTSEVDAQE---LA 75 Query: 73 EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK----------SNEI 121 E S SLF++ +++++ K ++ + + +++++ ++++ Sbjct: 76 EHLSPSLFAEGRVVVLSAAQEAGKDMVAAVLRYAAEPADGIVLVLQHQGGARGKSFADDL 135 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 +K E+ T D + + I+ +A +LL +G Sbjct: 136 RKAGAAVTRCERLTRPA----------ERADFVRAEVRRLGGKITGDAVDVLLEAVG--- 182 Query: 182 IASRNELQKLSSYCLE-----DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 +EL++L+S + ++ E+ V+ + + + G A+ Sbjct: 183 ----SELRELASAAGQLVADTGGVVDEKAVRRYHRGRAEATGFTVADKVVAGDREGALEA 238 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + L + + + + + ++ +++ Q Sbjct: 239 LRWALVLGVAPVLVADALA---DAVRTLAKVGAAGRGDPNRLAGTLGMPPWKIRKA--QG 293 Query: 297 SLRIWNKNLV 306 +R W + Sbjct: 294 QVRSWRPEGL 303 >gi|295111912|emb|CBL28662.1| DNA polymerase III, delta subunit [Synergistetes bacterium SGP1] Length = 299 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 72/227 (31%), Gaps = 15/227 (6%) Query: 39 NQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV 97 Q ++ ++ + + +A + + S LF+ ++ ++ E Sbjct: 15 RQLEETLTALTREDRQVSGKFDADGTFPDWRALLERVGSRGLFAAREAVVAEGCEALGAF 74 Query: 98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-----MD 152 D L + + +I+ RK+ K L + + + D Sbjct: 75 PDGLAGSLEGPEADAVIVATFGG-----EARKVFSKEVLALKKVRFLKAEASVPPWKRKD 129 Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 + + ++ +A +L ++ R+EL KL+ Y + I V+ + D Sbjct: 130 WLLKLAQEKGWRLAPDAALLLGESIES-TEELRSELAKLALYA-DGREIALADVRALSFD 187 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + ++ G + S+ P +L + + Sbjct: 188 EGGRALLTFLDGVCAGNAQDVARALSRL--SRDPLLPVLTALCNRLR 232 >gi|317009931|gb|ADU80511.1| DNA polymerase III subunit delta [Helicobacter pylori India7] Length = 340 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129 +++++ + + KK + + + + N +II + ++ K ++ + K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E + IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANLLHLDISGHLLNALFETNNEDLGISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|254779790|ref|YP_003057896.1| DNA polymerase III subunit delta [Helicobacter pylori B38] gi|254001702|emb|CAX29933.1| DNA polymerase III delta subunit [Helicobacter pylori B38] Length = 340 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I + + + A + +K S + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKCN-NPDTEISLFYASDYEK--SQITTLLEQDSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDTNLFLKALERPSHNRLII---GLYNAKSDTTKYKYTSDT 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D I I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAICTRFFIPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLGI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAVL---NTPITLEDIQELSSNAGDMDLQKLILGLFLKK--STLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|322375444|ref|ZP_08049957.1| DNA polymerase III, delta subunit [Streptococcus sp. C300] gi|321279707|gb|EFX56747.1| DNA polymerase III, delta subunit [Streptococcus sp. C300] Length = 345 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 101/273 (36%), Gaps = 25/273 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + +Q K I D + + E+ E+ S F+ +K Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76 Query: 85 IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I+++++ + +K+ L E + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136 Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 +V AI + L ++ ++++ + LL G +E+QK Sbjct: 137 ATVFDAIEP---KEQELRQYFQKWSQKQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + D +I E+ + + I T I ++ + KI A L L Sbjct: 190 FLQSYKSDGMIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + L +F+ ++ I+ E + +I Sbjct: 250 IAVMLGQFRTFTQVKILSET-GQTESQIASSLG 281 >gi|269218611|ref|ZP_06162465.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211722|gb|EEZ78062.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 326 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 17/272 (6%) Query: 78 SLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF++ ++ NL ++ + D L + + +I+ + L + Sbjct: 68 SLFAEPNVVAASNLQKMSDAFLADALAYVSAPDPDVVLILRHDGGTRGKRLLDAVRAGGF 127 Query: 136 SVLAISC--YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I YP+ K L+ + ++ ++ +A + L+ G D +L Sbjct: 128 QCCEIPAVKYPNEK---AALVRDEASRARRRMTADAVEALVDAHGNDVGELVAATSQLL- 183 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 D I E V+ +I +A + G A+ LA LAS + ++ Sbjct: 184 -SDVDGTIDEAAVRTYYAGRIQASGFDIADAAVAGNGGKAVALARHALASGVAPVPIVAA 242 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 K + L + K S + + P +R + W+ + + + Sbjct: 243 LAYKLRTLALVAARKGASARPGD-------PTMSPGQRRRAERIAGQWSNEALATAIQAV 295 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 + + + + IL +A A + Sbjct: 296 AQADAEVKGASRDPEFALERVILRVA-AAKRG 326 >gi|332298753|ref|YP_004440675.1| DNA polymerase III, delta subunit [Treponema brennaborense DSM 12168] gi|332181856|gb|AEE17544.1| DNA polymerase III, delta subunit [Treponema brennaborense DSM 12168] Length = 348 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 102/335 (30%), Gaps = 27/335 (8%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + V++F G + G + + + + D A ++ + + + SL Sbjct: 3 AAPVYLFTGPEFGERNDAVLNLRIQMRKRLGDLDEYTFYTADTRVADVVSL---LMNESL 59 Query: 80 FSKKKIILIENLSTEKKVLD-------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 F+ + I++ KK D KN +I+ S E + L + Sbjct: 60 FAAARFIVLNGAEQIKKKEDLELLDGWIRSAASGKNAAGSALILVSEENSCDKKLEALIP 119 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K + + D K I + +A +L + + A R E + Sbjct: 120 KENKRIFWEMFDDRKEE---WIRNFFKKAGYGVENDAVTTILDLVENNTEALRTECSRFF 176 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATI------QGKIYNAIMLADFFLASK-M 245 + + V+ I+ + +A ++ ++ + SK Sbjct: 177 LCFDKGHTVGASDVEQILAHNREESPFTLFDAFTDLARNPAARLEASLEILQKLRMSKDS 236 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWN 302 L+ G F+ L H + + + ++ + ++ + RIWN Sbjct: 237 SGVQLIAGLTYCFRRLAVWHRLFAENPHPSDFDLKIKG----FSSKKAQKQYRAAARIWN 292 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 L + R ++ Q +LY Sbjct: 293 APQTSLILAALARTDMDIRTAGTALEDTQLQLLLY 327 >gi|282851687|ref|ZP_06261052.1| putative DNA polymerase III, delta subunit [Lactobacillus gasseri 224-1] gi|282557655|gb|EFB63252.1| putative DNA polymerase III, delta subunit [Lactobacillus gasseri 224-1] Length = 299 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 18/212 (8%) Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHII 114 ++ + + +SLFS +K+++++N KK ++ L +II I Sbjct: 21 LEDGLDELMATLTESSLFSSQKMVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDI 80 Query: 115 IIKSNE---IKKNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEA 169 +I I + + K + +V+ ++ Y + +I+ I+ A Sbjct: 81 VIFVANYEKIDRRKKVSKFLLEHVNVVETSLKPYE-----VSGVIKAISKEEGYQITNMA 135 Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 QIL+ A+ + KL + ED ITE + + I + I EI+ A Sbjct: 136 LQILMQRSDQVLDAALSNYLKLKNIVGEDKKITETLINENIDRSLSENIFEILTAAFNKN 195 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 A D L + LL F + + L Sbjct: 196 YQEATQRLDDHLREGASAIQLLAIFESQIEFL 227 >gi|225443722|ref|XP_002265273.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1161 Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 67/193 (34%), Gaps = 19/193 (9%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G + L++LS I+ V Sbjct: 632 DADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 688 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL+ + + Sbjct: 689 QELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMS---------QLATV 739 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 I + S++ ++ + + ++L + +R+ L + R Sbjct: 740 ITDILAGSYDFTKERLRRK-FFRR-----QALSKEDMEKLRQALKTLSEAEKQLRMSND- 792 Query: 327 EKNIIFQTILYIA 339 + + +L +A Sbjct: 793 KLTWLTAALLQLA 805 >gi|315587138|gb|ADU41519.1| DNA polymerase III subunit delta [Helicobacter pylori 35A] Length = 340 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYTQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSDA 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K I Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEILGYAPP 286 >gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira hyodysenteriae WA1] gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira hyodysenteriae WA1] Length = 527 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 107/299 (35%), Gaps = 22/299 (7%) Query: 45 ISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCL 101 I P ++ ++ + +NI T + + + K K+ +I+ + + L Sbjct: 82 TQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKVYIIDEVHQITNEAFNAL 141 Query: 102 EEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLL 159 + + + + + I+ + E ++ T+R +++T L I L +++ L Sbjct: 142 LKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSLGI-------EDLEKILKGILD 194 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 +EA ++ G S L+K+ +Y + IT V ++ + +++ Sbjct: 195 KENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVNAVVGGNNFSFVK 254 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 + I+G + ++ ++ +++ I S I K++ Sbjct: 255 GFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIK-----SGIDDIKLL 309 Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 + I +R+ L+ +N + + L I R + +L + Sbjct: 310 E-----ITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEMRMLLLL 363 >gi|308064027|gb|ADO05914.1| DNA polymerase III subunit delta [Helicobacter pylori Sat464] Length = 340 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANSLHLDISSHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + I + ++++ + + ++++I K +A+ + D+ L Sbjct: 190 SFNDLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + S + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTSGLMDAKEVLGYAPP 286 >gi|298529741|ref|ZP_07017144.1| DNA polymerase III delta [Desulfonatronospira thiodismutans ASO3-1] gi|298511177|gb|EFI35080.1| DNA polymerase III delta [Desulfonatronospira thiodismutans ASO3-1] Length = 323 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 28/294 (9%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + F+ D GL+ Q K + D + + L + + + + W +N ++ Sbjct: 7 YFFFCPDAGLVK---RQIHKTLEPYDPDSWEINTLWSDDPELD-QKLWKALNMANMMGPS 62 Query: 84 KIILIENLSTEKKVL-DCLEEIIIKNICNH--IIIIKSNEIKKNNTL------RKIAEKF 134 +++++ N K L + ++ K+ + +K + Sbjct: 63 RVVVVRNCQVFKDAQWKALAPALKGFKSGIWPFFCLEGQWDKQKPKIPAVLENKKFFKIA 122 Query: 135 TSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I +P + +L +E+ + ++ L+ L + + EL+KL Sbjct: 123 RERGWIWQFPGITRQNLPRYLEKRARETGLVFAPGVQEKLVNILPLNSLGVDQELEKLLL 182 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + + +H DI+ L I + + QGK N ++ F + L Sbjct: 183 LANDQGKVEAEH-LDIVEPRADLDIFAQMQSIQQGK--NITLVWQKFFRDQQTGQEALFP 239 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIW 301 FL +H + +++ + + ++ L L R+W Sbjct: 240 FLG-----LLLHEARVLWHLAAGEEDRVFLYPRTKNEKKRLARQLGPRNIARLW 288 >gi|327399812|ref|YP_004340681.1| DNA polymerase III subunit delta [Hippea maritima DSM 10411] gi|327182441|gb|AEA34622.1| DNA polymerase III delta [Hippea maritima DSM 10411] Length = 305 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 24/228 (10%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +IF G D + + K +V+ + E+++ + S LF K Sbjct: 19 YIFCGDDYFIKDLYAKRIAKTKGAQIR---KVVITDEAELRQ----IMAKALSKPLFQAK 71 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 ++L +ST D + + I ++I+I+ +++ R EK +V+ Sbjct: 72 PLLLYGVVST-----DLPKNLSITPPTHNILIL---DLE-----RCKEEKENTVIFKPP- 117 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILIT 202 + I+ + K+I+ EA ++L + G + +N + +L I Sbjct: 118 --KASEIASFIKNAASRNNKTITDEAVRLLSRSFEGKNTSYLKNTVDELLLLTYNKKQIE 175 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + + T I++II+ + L+ PS + Sbjct: 176 KEDAEKCLTLTANFDIKDIIDMVKTKDFVGIVEKIGQILSQIPPSLFV 223 >gi|195977789|ref|YP_002123033.1| DNA polymerase III subunit delta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974494|gb|ACG62020.1| DNA polymerase III subunit delta [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 353 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 25/274 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + K I+ D F + + + + S Sbjct: 18 ITVVAGEDIGQYSHMKALLLKKIAFDPSDLTYSYFDMSEALYQTAEMD-------LVSMP 70 Query: 79 LFSKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++++ +++T KK L E+ + + ++I + ++ L Sbjct: 71 FFADQKVVILDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ L P ++ S + A LL D + Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L +Y + IT + + I + + ++ +QGKI A L S Sbjct: 189 TFLKAYK-KSGPITVEDIAQAIPKSLQDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+L ++ + S + ++++ Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280 >gi|225870084|ref|YP_002746031.1| DNA polymerase III delta subunit [Streptococcus equi subsp. equi 4047] gi|225699488|emb|CAW93024.1| putative DNA polymerase III delta subunit [Streptococcus equi subsp. equi 4047] Length = 353 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 25/274 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + K I+ D F + + + + S Sbjct: 18 ITVVTGEDIGQYSHMKALLLKKIAFDPADLTYSYFDMSEALYQTAEMD-------LVSMP 70 Query: 79 LFSKKKIIL---IENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ + +++T KK L E+ + + ++I + ++ L Sbjct: 71 FFADQKVVIFDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ L P ++ S + A LL D + Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L +Y + IT + + I + + ++ +QGKI A L S Sbjct: 189 TFLKAYK-KSGPITVEDIAQAIPKSLQDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+L ++ + S + ++++ Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280 >gi|118618945|ref|YP_907277.1| hypothetical protein MUL_3677 [Mycobacterium ulcerans Agy99] gi|118571055|gb|ABL05806.1| DNA polymerase III, delta subunit HolA [Mycobacterium ulcerans Agy99] Length = 325 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 86/251 (34%), Gaps = 23/251 (9%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKI 130 E+ S SLF++++I+++E + K L ++++ S + ++ Sbjct: 59 ELLSPSLFAEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRTKALAGEL 118 Query: 131 AEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K C +D + + + ++ LL +G D ++ Sbjct: 119 --KSLGAQVHPCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSD-------IR 169 Query: 190 KLSSYCLEDILITEQHVKDII-----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +L+S C + + T V + + +I + + G + A + + Sbjct: 170 ELASACSQLVADTGGDVDAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRG 229 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 P L E IH I +S + ++ + P + Q+ R W+++ Sbjct: 230 EPLLVLADALA------EAIHTIGRVGPLSGDPYRMASQLGMRPWRVQKAQKQARRWSRD 283 Query: 305 LVRETLHKIDH 315 V + + Sbjct: 284 KVATAMQLVAQ 294 >gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo] Length = 1170 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 61/194 (31%), Gaps = 21/194 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G + L++LS I+ + Sbjct: 631 DADVIHTLQWIATQENLEIDKDALKLITSRSDGSLRDAEMTLEQLSLL---GQRISVPLI 687 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + S + AL+ + Sbjct: 688 QELVGLISDEKLVDLLDLALSADTVNTVKHLRLIIESGVEPMALMSQIATVITDILAGSY 747 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 + + ++ + +E + +R+ L + R Sbjct: 748 DFKKERPRRK----------FFRRQPLSKE-----DMEKLRQALKTLSEAEKQLRMSNDK 792 Query: 326 LEKNIIFQTILYIA 339 L + +L +A Sbjct: 793 L--TWLTAALLQLA 804 >gi|317013034|gb|ADU83642.1| DNA polymerase III subunit delta [Helicobacter pylori Lithuania75] Length = 340 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDMETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129 +++++ + + KK + + + + N +II + ++ K ++ + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E + IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANLLHLDISSHLLNALFEINNEDLGISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SILDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|217033568|ref|ZP_03438996.1| hypothetical protein HP9810_899g4 [Helicobacter pylori 98-10] gi|216943914|gb|EEC23348.1| hypothetical protein HP9810_899g4 [Helicobacter pylori 98-10] Length = 320 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 26/226 (11%) Query: 78 SLFSKKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 SLF +++++ + + KK + + + + N +II + K Sbjct: 49 SLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKY 105 Query: 133 KFTSVLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGG 179 +++ S D IH+ I +E IS L Sbjct: 106 TSDAIVKFFQKSPLKDEAIHVRFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNE 165 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 D S N+L KL+ + IT + ++++ + + ++++I K + + + D+ Sbjct: 166 DLSVSFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDY 220 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 L +L G + F L + + + K + Sbjct: 221 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 266 >gi|260062481|ref|YP_003195561.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata HTCC2501] gi|88784046|gb|EAR15216.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata HTCC2501] Length = 631 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 37/328 (11%), Positives = 100/328 (30%), Gaps = 43/328 (13%) Query: 38 INQFKKNISITYHD------PFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIE 89 K I+ + F++ L+A +I +++ K K+ +I+ Sbjct: 67 ARILAKKINEDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIID 126 Query: 90 NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN 146 + + + + + + + I I+ EK + I C + Sbjct: 127 EVHMLSQAAFNAFLKTLEEPPRHAIFIL------------ATTEKHKIIPTILSRCQIFD 174 Query: 147 KIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + ++ +EA ++ G + + ++ S+ + Sbjct: 175 FRRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNK--L 232 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T + V + + V E + ++G I ++ + LA H ++G F+ L Sbjct: 233 TRKAVAENLNVLDVDVYFESTDHILKGDIPALLIYFNEILAQGFEGHHYINGLASHFRDL 292 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + + + + + ++ L+++ + + L + + Sbjct: 293 MVCTSQETVALLETSESV----------RQRYLEQA-SHCSGEFLLAALDLANQCDLDYK 341 Query: 322 --KKKYLEKNIIFQTILYIAQTACKNNN 347 K L + + + Q K Sbjct: 342 TSKNHRLLVELCLMKLASLTQRQKKKAR 369 >gi|120404867|ref|YP_954696.1| hypothetical protein Mvan_3913 [Mycobacterium vanbaalenii PYR-1] gi|119957685|gb|ABM14690.1| DNA polymerase III, delta [Mycobacterium vanbaalenii PYR-1] Length = 316 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/326 (10%), Positives = 100/326 (30%), Gaps = 25/326 (7%) Query: 25 IFYGSDKGLIFE------LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + G ++ L+ + S D ++ E+ E+ S S Sbjct: 6 LVLGDEELLVERAVAEVLRTARASAGTSDVPVDRLRAGEVSVSELA--------ELLSPS 57 Query: 79 LFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 LF+ ++++++E+ + K + ++ ++++ + + L +K Sbjct: 58 LFADERVVVLESAAEAGKDAVALIQTAAADLPDGTLLVVVHSGGGRAKALADQLKKL-GA 116 Query: 138 LAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 C D + + + + + +L LG D +L Sbjct: 117 EVHPCARITKASERADFVRKEFRTLRVKVDEATVTAVLDALGSDIRELAAACSQLV--AD 174 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + V+ + +I + + G + A + + + P L + Sbjct: 175 TGGAVDAAAVRRYYSGRAEVKGFDIADKAVVGDVAGAAEALRWAMMAGEPHVVLADALAE 234 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + + ++ + P + Q+ R W+++ V + L + Sbjct: 235 AVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQARRWSRDSVAQALRLVAAL 288 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTA 342 + + + + +A+ A Sbjct: 289 NADVKGAAADADYALEKAVRSVAELA 314 >gi|323359819|ref|YP_004226215.1| DNA polymerase III, delta subunit [Microbacterium testaceum StLB037] gi|323276190|dbj|BAJ76335.1| DNA polymerase III, delta subunit [Microbacterium testaceum StLB037] Length = 345 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 96/305 (31%), Gaps = 18/305 (5%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G ++ + E + + + + A + T + S SLF Sbjct: 29 PIVLVSGPEE-VCAERATAGIREFLKSEDPSLEVTDVRADDYAA--GTLL-AVTSPSLFG 84 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138 + +++ + + L + + +++ ++ L I + Sbjct: 85 EPRLVRVGGVEKCSDTFLSEAVSYLAQPQDGATVVLRHTGASVRGKKLLDAIRAGQGGGI 144 Query: 139 AISCYPDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I+C P K K I+ A + L++ D Q+L Sbjct: 145 EIAC-PAIKRDSDRFDFAVGEFKASSKRIAPVALRALVSAFADDLTELAAACQQLI--AD 201 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 I E+ V+ + + I G+ A++ LAS L+ Sbjct: 202 VPGDIDERTVERYYGGRVETSAFTVADTAIAGQYGPALLALRHALASGADPVPLVAAVAM 261 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 K + + ++ +E S+ +++ K + + +R+++ W + +H Sbjct: 262 KLRTMARVAGTREPSSQLAQRLGMK-DWQVDRARRDLVG-----WTAASLGRAIHATARA 315 Query: 317 IHLAR 321 + Sbjct: 316 DAEVK 320 >gi|312196040|ref|YP_004016101.1| DNA polymerase III subunit delta [Frankia sp. EuI1c] gi|311227376|gb|ADP80231.1| DNA polymerase III, delta subunit [Frankia sp. EuI1c] Length = 340 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 18/287 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G ++ L+ + + + +V A E + ++ ++SLF Sbjct: 17 PLLLIQGDEELLVA-RAVREALDAARAVDPELEVVDRAAGEFTDSD---VVDLGASSLFG 72 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 + ++I ++ D L I + + ++++ N +N RKI + + A Sbjct: 73 GLRAVVIRAAQDLTDELRDALIAYIAHPMDDVVLVVVHNGAVRN---RKIVDAMKAAGAR 129 Query: 141 S---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + D + + I A LL +G D + ++L Sbjct: 130 AVTVPKISRPRERHDFVVAEVRRAGGRIGDAAAAALLDAVGSDLRELASVCEQLV--ADT 187 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D + E V + +A I G + A+ L L S + + Sbjct: 188 DGPLDEAAVHRFHRGRAEASGFAVADAAIGGDLGAALTLLRQALESGTAAVLISSAVTGG 247 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + L + + S + + +++ Q S R W+ + Sbjct: 248 LRDLAR---VAGAGGGSKFDLARALGMPDWKVEKA--QRSARSWSDD 289 >gi|313140332|ref|ZP_07802525.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] gi|313132842|gb|EFR50459.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] Length = 328 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 17/223 (7%) Query: 107 KNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 + I+I +K L ++ + ++ + L ++ + + Sbjct: 98 ADPGASSIVICRHEGGVKGKRLLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGEHRR 156 Query: 165 ISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 + A Q L+A LG G+ A ++L + +D IT V + + + Sbjct: 157 VEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFSV 212 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281 + I G+ AI+ + AL+ K+ I + S + I Q Sbjct: 213 ADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQA 266 Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 K + +N + L W + + + + ++ Sbjct: 267 QAKTNPWVLKNAM-RQLSGWTSAGLGQCIRMLAWADEQSKTNG 308 >gi|306825015|ref|ZP_07458358.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432842|gb|EFM35815.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 345 Score = 51.5 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 125/337 (37%), Gaps = 31/337 (9%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + +Q K I D + + E+ E+ S F+ +K Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76 Query: 85 IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I+++++ + +K L EE + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFVDITTAKKHFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDCKRRLVKLLKRD 136 Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 +V AI + L ++ ++++ + LL G +E+QK Sbjct: 137 ATVFDAI---EAKEQELRQYFQKWSQTQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 + D LI E+ + ++I T I ++ + KI A L L Sbjct: 190 FLQSYKSDGLIEEKDIIEVIPKTLQDNIFDLTQFILAKKIDQARDLVRDLTLQGEDEIKL 249 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNL 305 + L +F+ ++ I+ + + +I+ + L++S R + Sbjct: 250 IAVMLGQFRTFIQVKILSDA-GQTESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAF 307 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 ++ + + + + Y + + + +L IA A Sbjct: 308 LKRAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344 >gi|297380427|gb|ADI35314.1| DNA polymerase III subunit delta [Helicobacter pylori v225d] Length = 340 Score = 51.1 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I + A + +KN + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCN-NPDMETSFFYASDYEKN--QIATLLEQDSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ + S D IH I +E IS L D Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|224283182|ref|ZP_03646504.1| DNA polymerase III delta subunit [Bifidobacterium bifidum NCIMB 41171] gi|310287547|ref|YP_003938805.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum S17] gi|309251483|gb|ADO53231.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum S17] Length = 325 Score = 51.1 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 17/223 (7%) Query: 107 KNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 + I+I +K L ++ + ++ + L ++ + + Sbjct: 95 ADPGASSIVICRHEGGVKGKRLLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGEHRR 153 Query: 165 ISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 + A Q L+A LG G+ A ++L + +D IT V + + + Sbjct: 154 VEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFSV 209 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281 + I G+ AI+ + AL+ K+ I + S + I Q Sbjct: 210 ADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQA 263 Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 K + +N + L W + + + + ++ Sbjct: 264 QAKTNPWVLKNAM-RQLSGWTSAGLGQCIRMLAWADEQSKTNG 305 >gi|111221436|ref|YP_712230.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111148968|emb|CAJ60648.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 352 Score = 51.1 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 19/303 (6%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + + G + L+ ++ + + V++ + + + + +TS Sbjct: 25 PAPPLVLVSGDEDLLV---GRAVREVLDAARARDPEVEVVDRAAAEFTEADMVD-LGATS 80 Query: 79 LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE--KF 134 +F + +++ + +++ D L I + + ++++ S +K RK+A+ K Sbjct: 81 MFGGGRAVVVRGVQDLGEELRDALLAYISHPLDDVVLVLVHSGAVKN----RKLADAMKA 136 Query: 135 TSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + D + + +S A + LL +GGD +L + Sbjct: 137 AGARVVPAAKITKPRERHDFVVAEVRRLGGRVSDGAVRALLDAVGGDLRELAAVCDQLVA 196 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 ++ E V + +A I G + A+ L + + + Sbjct: 197 DTEG-GMLDEAAVARFHRGRAEATGFAVADAIIGGDLPQALTLLRQAVEGGTAAVLITSA 255 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + L ++ + + + + Q S R W+ + L Sbjct: 256 VAGGLRDLARVSSAGPGTKWDLARALGMPD----WKVEKA-QRSARAWSDPGLALALRAS 310 Query: 314 DHR 316 Sbjct: 311 ATA 313 >gi|261839966|gb|ACX99731.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori 52] Length = 340 Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII---IKSNEIKK----NNTLRK 129 +++++ + KK + + + + N +II ++ K ++T+ K Sbjct: 73 GSSLVVLKLDFVLHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYTSDTIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLSVSFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286 >gi|213581840|ref|ZP_03363666.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 167 Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 54/143 (37%), Gaps = 5/143 (3%) Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239 + +A L++LS D +T V+ + D ++A + GK A+ + Sbjct: 1 NLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQ 59 Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 LL ++ LL + ++ ++ + K + +R ++ ++L+ Sbjct: 60 LRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQ 115 Query: 300 IWNKNLVRETLHKIDHRIHLARK 322 + +R+ + + ++ Sbjct: 116 RLHPAQLRQAVQLLTRTEITLKQ 138 >gi|183983714|ref|YP_001852005.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M] gi|183177040|gb|ACC42150.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M] Length = 325 Score = 51.1 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/251 (12%), Positives = 83/251 (33%), Gaps = 23/251 (9%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKI 130 E+ S SLF++++I+++E + K L ++++ S + ++ Sbjct: 59 ELLSPSLFAEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRAKALAGEL 118 Query: 131 AEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 K C +D + + + ++ LL +G D ++ Sbjct: 119 --KSLGAQVHPCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSD-------IR 169 Query: 190 KLSSYCLEDILITEQHVKDII-----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 +L+S C + + T V + + +I + + G + A + + Sbjct: 170 ELASACSQLVADTGGDVDAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRG 229 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 P L + + + + ++ + P + Q+ R W+++ Sbjct: 230 EPLVVLADALAEAIHTIGR----VGPLSGDPYRMASQLGMP--PWRVQKAQKQARRWSRD 283 Query: 305 LVRETLHKIDH 315 V + + Sbjct: 284 KVATAMQLVAQ 294 >gi|134098024|ref|YP_001103685.1| hypothetical protein SACE_1438 [Saccharopolyspora erythraea NRRL 2338] gi|291007211|ref|ZP_06565184.1| hypothetical protein SeryN2_22042 [Saccharopolyspora erythraea NRRL 2338] gi|133910647|emb|CAM00760.1| DNA polymerase III delta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 326 Score = 50.7 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 37/327 (11%), Positives = 98/327 (29%), Gaps = 27/327 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G ++ L+ E + L + E+ +E+ S SLF+ Sbjct: 10 PLHLILGEEELLV-ERALWAAVGAARAADPEAELRRVKVSELT--PPEL-DEMLSPSLFA 65 Query: 82 KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIII---------KSNEIKKNNTLRKIA 131 + +++ +E K++ + + + I+++ + E+ N LRK+ Sbjct: 66 EGRVVALEAAQEAGKEIAEAVLSYARQPAEGVILVVVHSGGGRGKNAKELP--NALRKLG 123 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + T I + + + I L+ +G D + +L Sbjct: 124 ARVTECNKI----TKPAEREAFVRDEVRRAGGKIDASGVSALIETVGSDLRELSSAASQL 179 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + + + V+ + + + G A+ + L +P + Sbjct: 180 VADTGGK--VDDAAVRRYHRGRAEVTGFVVAEKAVTGDRTGALESLRWALQLGVPHVLIA 237 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 + I + ++ + + L +S R W+ + + L Sbjct: 238 DALA---DAVRTIGRVAAAGRSDPFRLAGELGMPA-WKVKKALAQS-RGWSSATIADALQ 292 Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYI 338 + + + +L + Sbjct: 293 VAAALNAEVKGMAADADYALERAVLRV 319 >gi|305680746|ref|ZP_07403553.1| DNA polymerase III, delta subunit [Corynebacterium matruchotii ATCC 14266] gi|305658951|gb|EFM48451.1| DNA polymerase III, delta subunit [Corynebacterium matruchotii ATCC 14266] Length = 322 Score = 50.7 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 98/299 (32%), Gaps = 15/299 (5%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 + S V + G+++ L E +++ L + E Sbjct: 2 PTPITPSPQVHLIVGAEEFL-AERARLDIVAQLKQQSSEGENLMVTTLRAGDVTESELIE 60 Query: 74 INSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + S SLF + +I+++ L K+ D + + + II+ N + + Sbjct: 61 LCSPSLFGEDRIVVLTKLEDAGKEPADLILKFAVNPAPGVAIILMHNG---GGRTKALVP 117 Query: 133 KFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 K + + + + + + + Q +LA +G D + + + Sbjct: 118 KLKKIATVH-QAEKLKPQERMGWVTNEFRRHNVRPTPDVVQAVLAGVGSDLRELASAVSQ 176 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L ++T Q V D + +I + G+ A++ L + AL Sbjct: 177 LV--ADTGGVVTAQAVHDYYAGVAEVSGFDIADYACSGQEQRALVSMRRALQLGLEPAAL 234 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 K + +++ ++ + S + +++ + R W+ + V + Sbjct: 235 AAALAMKVSGIARLYSLRGRVDRSLA---GSLGMHPFVLEKTA--QIARRWSGDAVSDA 288 >gi|311064460|ref|YP_003971185.1| DNA polymerase III subunit delta [Bifidobacterium bifidum PRL2010] gi|310866779|gb|ADP36148.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum PRL2010] Length = 312 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 73/224 (32%), Gaps = 19/224 (8%) Query: 107 KNICNHIIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 + I+I + K L ++ + ++ + L ++ + ++ Sbjct: 82 ADPGASSIVICRHEGGAKGKR-LLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGERR 139 Query: 164 SISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + A Q L+A LG G+ A ++L + +D IT V + + Sbjct: 140 RVEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFS 195 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + + I G+ AI+ + AL+ K+ I + S + I Q Sbjct: 196 VADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQ 249 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 K + +N + L W + + + ++ Sbjct: 250 AQAKTNPWVLKNAM-RQLSGWTSAGLGRCIRMLAWADEQSKTNG 292 >gi|269123150|ref|YP_003305727.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112] gi|268314476|gb|ACZ00850.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112] Length = 295 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 104/232 (44%), Gaps = 29/232 (12%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSN-E 120 + +S F +E+N+ SLFS+ I++++N + K + + ++ + + + +II ++N E Sbjct: 31 ENTVSEFLSELNAGSLFSEPTILILKNANKVKDINNVIKNVNLNTFNDKDVIIDYEANKE 90 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH---LMDLIEESLLIGQKSISKEAKQILLANL 177 KK L E + D++ + L+ I+E L SK++ IL + Sbjct: 91 NKKIKELLNNFEVHEIL-------DDRENKNVLIKYIQERLKCN----SKDSNNIL-EII 138 Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 G D + +NE+ K+ SY L + ++K I+ +I + + K+ + Sbjct: 139 GQDFYSLKNEIDKICSY-LNGEEFSFDNIKPILSKNTNFFIFNLTEDILNKKMIEFPIKE 197 Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 + ALL F+++ K+HI+ + NI++ + E + Sbjct: 198 N---------MALLSSLSNDFEIMYKLHIL-DIKNINYNNFKSQYENHKFFK 239 >gi|85057290|ref|YP_456206.1| DNA polymerase III, delta subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789395|gb|ABC65127.1| DNA polymerase III, delta subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 323 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 13/244 (5%) Query: 63 IQKNIST-FWNEINSTSLFSK--KKIILIENLST--EKKVLDC--LEEIIIKNICNHIII 115 +QK+I T E+ +TSL KK+IL+++ +KK + L + N + Sbjct: 41 MQKDIVTELKKELQNTSLIENTWKKVILVDHSEILFQKKTQEIAFLISYLQNPYKNLDLY 100 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + + K + ++KI EK + K I + I + Q L + Sbjct: 101 FFAEKTTKTSEVQKIWEKHCICKTTNSL--EKKDFFKYIMDVFQKDGFKIDTKTIQELAS 158 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 + E+ K+ D IT Q V+ I I +IN ++ +A Sbjct: 159 KTNYNLYFLHQEITKIKLCQTNDKNITWQMVQKINAFKKNDNIFGLINLFLKQNYIDAYQ 218 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIP--MKR 291 + K+ + +++ K + L + + + N E K++ ++ + + Sbjct: 219 IYKTLKMQKINAFNVINRLTHKIKELLLVKELLQQKNNPEELQKVLAVSQGKVFFLIKEA 278 Query: 292 NILQ 295 +++ Sbjct: 279 KLIE 282 >gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii] gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii] Length = 1291 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 58/175 (33%), Gaps = 22/175 (12%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ +++ I EA +++ + G + L +L ++T +++ Sbjct: 677 DIISRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLL---GQVVTLSTLQE 733 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + G + + L S + AL L + Sbjct: 734 LVGLLPDDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLAL-------MSQLATLITDM 786 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNIL--QESLRIWNKNLVRETLHKIDHRIHLAR 321 + + K ++ ++ + +L + +R+ L + R Sbjct: 787 ----------LAGSYKPVLTQRKRRFFHKIALSKEDLERLRQALKILSEAEKQVR 831 >gi|257055306|ref|YP_003133138.1| hypothetical protein Svir_12630 [Saccharomonospora viridis DSM 43017] gi|256585178|gb|ACU96311.1| DNA polymerase III, delta subunit [Saccharomonospora viridis DSM 43017] Length = 326 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 35/329 (10%), Positives = 99/329 (30%), Gaps = 16/329 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ G ++ L+ E + + + + E+ + F E+ S SLFS Sbjct: 10 PLYLVLGEEELLV-ERAVREAVDTARLADPTAEATRVRVSELT--PAQFA-ELVSPSLFS 65 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137 + ++++++ ++ D + + +++ K +L K +V Sbjct: 66 EGRVVVLDAAQEISQENADAVLSYVSAPADGITLVVVHSGGGRSKAAKSLPSALRKAGAV 125 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 + + + I A L+ +G D + +L Sbjct: 126 VTECPKVTKPAEREAFVRNEVRRAGGRIDAPAVAALIDAVGTDLRELASAATQLV--ADS 183 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + E+ V+ + ++ + G A+ + + L Sbjct: 184 GGSVDEEAVRRYHRGRADVTGFQVAEKAVAGDRAAALESLRWAQQIGVAHVLLADALA-- 241 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + I + + + + +++ Q R W+ + + E + + Sbjct: 242 -DAVRTIAKVSAAGRGNPNHMAGELGMPPWKIRKA--QSQARGWSSSGLAEAMRVVARVN 298 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + + +L I A Sbjct: 299 AEVKGAAANPEYALERAVLDI-VEARDRR 326 >gi|225021707|ref|ZP_03710899.1| hypothetical protein CORMATOL_01735 [Corynebacterium matruchotii ATCC 33806] gi|224945698|gb|EEG26907.1| hypothetical protein CORMATOL_01735 [Corynebacterium matruchotii ATCC 33806] Length = 322 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 15/290 (5%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + G+++ L E +++ L + E+ S SLF + Sbjct: 11 VHLIVGAEEFL-AERARLDIVAQLKQQSPEGENLMVTTLRAGDVTESELIELCSPSLFGE 69 Query: 83 KKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +I+++ L K+ D + + + II+ N + + K + + Sbjct: 70 DRIVVLTKLEDAGKEPADLILKFAVNPAPGVAIILMHNG---GGRTKALVPKLKKIATVH 126 Query: 142 CYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + + + + + Q +LA +G D + + +L Sbjct: 127 -QAEKLKPQERMGWVTNEFRRHNVRPTPDVVQAVLAGVGSDLRELASAVSQLV--ADTGG 183 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 ++T Q V D + +I + G+ A++ L + AL K Sbjct: 184 VVTAQAVHDYYAGVAEVSGFDIADYACSGQEQRALVSMRRALQLGLEPAALAAALAMKVS 243 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 + +++ ++ + S + +++ + R W+ + V + Sbjct: 244 GIARLYSLRGRVDRSLA---GSLGMHPFVLEKTA--QIARRWSGDAVSDA 288 >gi|262203076|ref|YP_003274284.1| DNA polymerase III subunit delta [Gordonia bronchialis DSM 43247] gi|262086423|gb|ACY22391.1| DNA polymerase III delta [Gordonia bronchialis DSM 43247] Length = 324 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 103/302 (34%), Gaps = 29/302 (9%) Query: 20 SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + + + G D L +I+ S P + + A ++ ++ E+ S SL Sbjct: 5 TKRLHLLLGDDDFLTGRVISAVSAEQSGLAGTPVPVTRVRAGDVSEHE---LAELLSPSL 61 Query: 80 FSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKF 134 F++++I+++E+ + ++ + ++++ + + + L+K Sbjct: 62 FAEERIVVVESAAEAGKEPAALIAQAAASLPDGITLMVVHTGGGRAKSMVPALKKAG-AV 120 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-- 192 A +P ++ + + +S E + ++ +EL++L+ Sbjct: 121 EHATAAPRWPSERMD---FVRQEFRSLGVKVSPEVVEQVVE-------GVGSELRELAAA 170 Query: 193 ---SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 D + V+ + E+ + + G A+ + L +P Sbjct: 171 CAQLVADTDGKVDRDAVRLYYQGRPEITGFEVADRAVTGNRAAALESLAWALHHGVPHVL 230 Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 L + + +I + + + + P + +Q R W+ + + Sbjct: 231 LADALAEAVHRIARIRPM---GTGNHFALASELGMP--PRRVKDVQAQARAWDSESIAKA 285 Query: 310 LH 311 + Sbjct: 286 VQ 287 >gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5] gi|150415669|sp|A1RWU6|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 28/233 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS---TFWNEIN 75 S + YG +++ K S + L+ LNA +++ + +N Sbjct: 45 PSKKAALLYGPPGSGKTSIVHATAKEFS------WELIELNASDVRTREALQQRLLGALN 98 Query: 76 STSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI--KKNNTL 127 + S+ KIIL++ + + L + E+I K N I++ +N+ K L Sbjct: 99 TRSVLGYSGKIILLDEVDGISTKEDAGGLQAIVELIEK--SNWPIVLTANDPWDPKLRPL 156 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + E I K +M ++E S+E + N GD A+ N+ Sbjct: 157 RDLCE------LIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAIND 210 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 LQ L+ I+ ++ + I +I+ + + K + Sbjct: 211 LQSLAM---GKKTISLADLQILGDRAEQETIFDIVRSVLTAKYPEQALAVTRL 260 >gi|148377717|ref|YP_001256593.1| hypothetical protein MAG_4540 [Mycoplasma agalactiae PG2] gi|148291763|emb|CAL59152.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 325 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 59/341 (17%), Positives = 125/341 (36%), Gaps = 53/341 (15%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + GS+K LI + + + KK + + + + + ++ SLFS Sbjct: 1 MIFICGSEKFLIEQEVEKIKK---ENSDKTIEIFRFDDQALVSD---LISSASANSLFSG 54 Query: 83 KKIILIENL-----STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKF 134 K+ LI NL +T K D ++++I N + + I + I K Sbjct: 55 AKLFLIYNLDFFEKATFKDESDNVKDLINALKINKQDKFVFIN----------QNIFSKD 104 Query: 135 TSVLAISC---YPDNKIHLMDLIEESLLIGQK-------------SISKEAKQILLANLG 178 + I + +N+ + + + + IS EA ++L++ + Sbjct: 105 KIAVNIWTKFIFENNEHKVKMIEAKEMSESNLFSLAKSLANRYNIHISDEAIKLLISKVN 164 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D + +EL+KLS+ + +IT + ++ I NA + Sbjct: 165 NDSLMLNSELKKLSNL---NSIITPEIIESSTETLLGEDIFAFSNALETNDLGIIWARYK 221 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + L+ Q F + +I+ K C +S +++ + I + + L Sbjct: 222 EKMLEGVEISVLIGQISQIFIIAHQIYAYKVCQ-LSIDQLSKDLR--INSYRIKKISYFL 278 Query: 299 RIWNKNLVRE---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336 N +++ +L K+D + K + + I F+ L Sbjct: 279 SKVGINKIKKMILSLSKLDKDV----KNGLVSEKIGFERFL 315 >gi|239917745|ref|YP_002957303.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665] gi|281413760|ref|ZP_06245502.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665] gi|239838952|gb|ACS30749.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665] Length = 339 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 116/332 (34%), Gaps = 28/332 (8%) Query: 22 FVFIFYGSD---KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + G + + + + Q + H + L A E Q S S Sbjct: 27 PLMLLKGPEDHAARWVTDRVTQALR----ERHGQLEIHRLRAGEYQ--PGQLAT-AASPS 79 Query: 79 LFSKKKIILIENL-STEKKVLDCLEEIIIKNICN---HIIIIKSNEIKKNNTLRKIAEKF 134 LF++ +I +E L + L ++ + +++ + + L +A+ Sbjct: 80 LFAEPTLITVEGLEAMNDAFLADALRLVQQGPGAEDVTLVLRHTGGTRGKKLLEAVAKAG 139 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 T V + D + + ++ ++ I ++A + L+ G AS EL + Sbjct: 140 TVVECVPLKKDEER--LAFVQAEFRDRRRRIDEDAARALIRATG----ASLTELAAACAQ 193 Query: 195 CLED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 ++D ++T + V + +A + G+ A+ L +A+ + + Sbjct: 194 LVDDTEGVVTVETVDTYYSGRVEATSFAVADAALGGQAARAVSLVRHAMATGVHPVMITA 253 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 K + + ++ + ++ + P + +Q++ R W + + + Sbjct: 254 ALALKARQVARM----IDARRPAAELPSLLG--VAPFQVRYIQQAARHWTAAGIAQAVEW 307 Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 I A+ + + + ++ +A + Sbjct: 308 IAQADAEAKGASRNPEFAVERAVIRVATAVSR 339 >gi|312898622|ref|ZP_07758012.1| putative DNA polymerase III, delta subunit [Megasphaera micronuciformis F0359] gi|310620541|gb|EFQ04111.1| putative DNA polymerase III, delta subunit [Megasphaera micronuciformis F0359] Length = 341 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 112/342 (32%), Gaps = 26/342 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG++ ++ E F K + + + + + T I+ SLFS Sbjct: 6 IIYGTETYMMEEERKSFIKACESDCGEKPEITTFHKDDT---VFTVAENIDGESLFSAAT 62 Query: 85 I-ILI-----------ENLSTEKKVLDCLEEIIIKNICNHIII-IKSNEIKKNNTLRKIA 131 + + + S K D L E + ++ I + + K Sbjct: 63 LTVWKNPPVLPLKKSGRSRSKTDKSEDLLLERLANTRKGCYVLFIVEGPVDTGSAFYKAL 122 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA--NLGGDRIASR--NE 187 V A C + ++M ++ L +++ EA+ ++ + +E Sbjct: 123 VPLADVSA--CEAVTEKNIMFHVDTYLKKYGFTLTAEARGLMTEMFHTWSTLSLLYVFSE 180 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L KL+ I+ ++ + T + + I L A Sbjct: 181 LDKLAI-DPTRKRISADDLEGLFAGTAEKNLFTFGEYFLFRNGEGCIPLMKSLFAKTEGF 239 Query: 248 HALLHGFLQKFQLLEKIHIIKEC-SNISFEKIIQKTEKNIIPMKRNI--LQESLRIWNKN 304 + + ++L + + + +++ N P++ ++ LQ+ L+ W Sbjct: 240 MKSTAYLMSRLRMLRSYAELVASHKDKATVELLMTKINNGRPVRGSLYYLQKYLKYWTIK 299 Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346 + + + R+ ++++ LY +++ KN Sbjct: 300 ELDTLICDLFTLQLRMRRGTAVQEDAEALICLYCSKSVKKNR 341 >gi|331266153|ref|YP_004325783.1| DNA polymerase III subunit delta [Streptococcus oralis Uo5] gi|326682825|emb|CBZ00442.1| DNA polymerase III subunit delta [Streptococcus oralis Uo5] Length = 345 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 119/335 (35%), Gaps = 29/335 (8%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 F G+D+G + +Q K I D + + E+ E+ S F+ +KI Sbjct: 21 FTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 77 Query: 86 ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135 +++++ + +K+ L E + ++I + ++ L K+ ++ Sbjct: 78 VILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD- 136 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + L ++ ++++ + LL G +E+QK + Sbjct: 137 -AKVFDAVEAKEQELRQYFQKWSQTQGLQFAEKSFENLLIKSG----FQFSEIQKNLLFL 191 Query: 196 L---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D +I E+ + + I T I ++ + KI A L L+ Sbjct: 192 QSYKSDGVIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKLIA 251 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNLVR 307 L +F+ ++ I+ E S +I+ + L++S R + ++ Sbjct: 252 VMLGQFRTFTQVKILSEA-GQSESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAFLK 309 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + + + Y + + + +L IA A Sbjct: 310 RAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344 >gi|108563615|ref|YP_627931.1| DNA polymerase III subunit delta [Helicobacter pylori HPAG1] gi|107837388|gb|ABF85257.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori HPAG1] Length = 340 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 31/283 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K + Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNAKSDTTKYKYTSDA 129 Query: 137 VLAI---SCYPDNK-----------IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 ++ S D L L +E IS L D Sbjct: 130 IVKFFQKSPLKDEAVYARFFIPKTWESLKFL-QERANFLHLDISGHLLNALFETNNEDLS 188 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 S N+L KL+ IT + ++++ + + ++++I K + + + D+ L Sbjct: 189 VSFNDLDKLAVL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLK 243 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 244 EGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|317180973|dbj|BAJ58759.1| DNA polymerase III subunit delta [Helicobacter pylori F32] Length = 340 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSFFYASDYEKSQITTLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + + KK + + + + N +II + K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ S D IH I +E IS L D Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDIDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFTHIKTTGLMDAKEVLGYAPP 286 >gi|327198333|ref|YP_004306907.1| HolA DNA polymerase III subunit delta [Streptococcus phage Dp-1] gi|314912635|gb|ADT64026.1| HolA DNA polymerase III subunit delta [Streptococcus phage Dp-1] Length = 297 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 39/241 (16%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +I YG + GL +++ + ++V + ++ST W + L S Sbjct: 18 PFYILYGEEIGL-----------MNVYLNQMGNVVR------ETSVSTVWKTLTQKGLVS 60 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 +I + + ++ + + + ++ +++ +I K + L K Sbjct: 61 NHRIFAVRD--DKEFLSNESRWKRLPDVRYGTLVLMVTKIDKRSKLLKAF---------- 108 Query: 142 CYPDNKIHLMDLIEESLLIGQK----SISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 PDN + + + L +I + +++ D NEL KLS Sbjct: 109 --PDNCVEFEKMTDAQLKRHFVSKYSTIDSDMIDMVIQFCLNDYSRIDNELDKLS----R 162 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + V+ I+ + I +++ ++ + AIM LA LL Q Sbjct: 163 LKKVDASVVESIVKHKTEIDIFSLVDDVLEYRPEQAIMKVTELLAKGESPIGLLTLLYQN 222 Query: 258 F 258 F Sbjct: 223 F 223 >gi|238899078|ref|YP_002924760.1| DNA polymerase III, delta subunit, probably ATP hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466838|gb|ACQ68612.1| DNA polymerase III, delta subunit, probably ATP hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 352 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 116/310 (37%), Gaps = 17/310 (5%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 ++ YG + L+ E + ++ V + +NI + E+ SLFS + Sbjct: 21 YLLYGDEPLLLQESQDHIREAALRRNFTEHFTVTIEGDTEWENIFRIFQEL---SLFSSR 77 Query: 84 K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138 + +++ + + D L +++ N +++++ +++ K N+ K Sbjct: 78 QTLLVIFPHKLLPASMKDRLGQLVQLLHQNILLMMRFHKLTKAQENSPWYKAL--APYAC 135 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 I+C N L I+ I + L G+ I + ++L L S + Sbjct: 136 KINCEKPNHQRLPAWIKTRSKSLCFDIDLPCIERLCECYEGN-ILALSQLLTLLSLVYPN 194 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 ++ ++ ++ + + NA ++GK A+++ + LL Sbjct: 195 EQLSLPKIEPLLNNFAHFTPYQWSNALLEGKTERALLILKKLQQEEHEPVILLRILQPDL 254 Query: 259 QLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 LL + + E I+ + + + +R ++L+ + N++++ +H Sbjct: 255 LLLVTLKRAMAEVPLITLFQ-----QHQVWQSRRTYFTQALQRLSLNVLKQGVHLFYQIE 309 Query: 318 HLARKKKYLE 327 ++ L Sbjct: 310 ISLKQDYALS 319 >gi|71892092|ref|YP_277822.1| DNA polymerase III, delta subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796198|gb|AAZ40949.1| DNA polymerase III, delta subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 342 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 100/271 (36%), Gaps = 16/271 (5%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHII 114 AL++ + N +SLF K++I+ ++ ++ KK + L + ++ + Sbjct: 54 ALDMYSDWENICNLFRVSSLFEKRRILSLKFPQNYPVAILKKKVPLLFSFLHDDLVLILY 113 Query: 115 IIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 I +SN+I KNN + +K + + C L+ IE + I A Q+L Sbjct: 114 IHESNQINKNNIWLQCFKK--IGIFVDCSTPTHTRLIMWIENQAKNMKLVIENLACQLLC 171 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 G+ L+ LS D + VK I+ D+ + I + + G A Sbjct: 172 YYYEGNLTLLNQTLRNLSL-IYPDGNLNFIRVKKIVTDSACFNMNHWIESILTGNKQRAD 230 Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR--- 291 + + LL + ++ + S +++K + ++ Sbjct: 231 RILKKLEYIGVDLELLLCRIKSEILMITNMKYNM-VQGKSLFNLLKKYK----IYRKYHC 285 Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARK 322 +L ++ + + + + + + +K Sbjct: 286 MLLARAVNRLSLYQLYQAIELLAQIELIYKK 316 >gi|254774587|ref|ZP_05216103.1| hypothetical protein MaviaA2_07948 [Mycobacterium avium subsp. avium ATCC 25291] Length = 325 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%) Query: 22 FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + + G ++ L+ E++ + +K + + + A ++ E+ S Sbjct: 6 PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYE---LAELLSP 62 Query: 78 SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF+ ++I+++E + + L ++++ S + Sbjct: 63 SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQAL 120 Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + C K +D + + + +E +L +G D + +L Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + V+ + +I + + G I A + + P L Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + + + + ++ + P + Q+ R W+++ V + + Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + +A+ A N Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325 >gi|298735729|ref|YP_003728254.1| DNA polymerase III subunit delta [Helicobacter pylori B8] gi|298354918|emb|CBI65790.1| DNA polymerase III subunit delta [Helicobacter pylori B8] Length = 340 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISTLFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKI------- 130 +++++ + + KK + L ++ ++ +II K + T K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLIIGLYNAKSDTTKYKYTSEIIVK 132 Query: 131 -AEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E IS L D S N Sbjct: 133 SFQKSPLKDEAICARFFIPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYTPP 286 >gi|317154520|ref|YP_004122568.1| DNA polymerase III subunit delta [Desulfovibrio aespoeensis Aspo-2] gi|316944771|gb|ADU63822.1| DNA polymerase III delta [Desulfovibrio aespoeensis Aspo-2] Length = 330 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 24/216 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I D LI Q ++ ++ + + + + + + FW ++ SLF++ Sbjct: 7 LILVCPDPQLIK---TQIEQRLAASGQQGWEVKPFWGDDDEPLPAAFWTDLTIKSLFAQP 63 Query: 84 KIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKS------NEIKKNNTLRKIAEKF 134 K ++I + D L+ + + + I ++ I + R I +K Sbjct: 64 KALVIRRAHALRAEHWDKLDAGVKGVSADILPIFCLEGEWKGKKPSIPATLSRRTIYKKA 123 Query: 135 T------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + ++ L ++ + A + L+A L D +A R EL Sbjct: 124 RDEGWVWESAGL-----DQASLGGFVKAWAKERGVTFEPGADRALVAALPADAVAVRLEL 178 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 KL + L+ +HV+ ++ + ++++A Sbjct: 179 DKLDLAAGDSRLVRREHVE-LVAPVGEMEFFDLMDA 213 >gi|13357888|ref|NP_078162.1| hypothetical protein UU328 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762240|ref|YP_001752410.1| DNA polymerase III delta subunit superfamily protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508781|ref|ZP_02958247.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11356922|pir||D82904 hypothetical protein UU328 [imported] - Ureaplasma urealyticum gi|6899306|gb|AAF30737.1|AE002130_4 unique hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827817|gb|ACA33079.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675726|gb|EDT87631.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 314 Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 113/306 (36%), Gaps = 19/306 (6%) Query: 23 VFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +F+ G ++ I E+ F + + I + +++ + + +N N Sbjct: 8 LFLITGDNRLKMDQKINEIATSFDELVKINDQ---EISLISFKNLIEQ-DDLFNS-NKIY 62 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 LF K + ENL K V D L + N II I+S +I +++ KF + Sbjct: 63 LF--KNVNWFENLEHLKNVSD-LIDYFFNNHVAIIITIESTKISTAKKIQETIAKFNHQI 119 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 Y + M ++E L S++K Q ++ + NEL K+ Sbjct: 120 TFMTYTNENA--MAFLKEELNQRNLSLNKSIMQTIIQKTNFNINFLNNELDKIELINDFL 177 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ICD I ++N Q KI +I L + L K+ +++ Sbjct: 178 KNHGMFDINNFICDYGEYQIFSLLNLLYQHKINESINLINKMLIDKIDELTIINMLATIM 237 Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 I ++ E N + + II ++ + +R ++ + + ++ + Sbjct: 238 STHYLIKLLHEKKYNKNVISSSLNQKPYII----DLNLKLIRNYSAKFLLKKMYDLLQLE 293 Query: 318 HLARKK 323 ++ Sbjct: 294 IKVKEN 299 >gi|290580885|ref|YP_003485277.1| hypothetical protein SmuNN2025_1359 [Streptococcus mutans NN2025] gi|254997784|dbj|BAH88385.1| hypothetical protein [Streptococcus mutans NN2025] Length = 346 Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 111/358 (31%), Gaps = 67/358 (18%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G ++ F I D F + + + + + + S Sbjct: 18 ITVLSGEDFGQYGQMKKLFFNKIGFEPSDLNFSYFDMSETSYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +KI++ +N + L E + + + ++I + ++ L Sbjct: 71 FFADEKIVIFDNFADITTDKRTFLNNNELKRFEAYLGNPLSSTKLVICASGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR--- 185 K+ ++ + L + E + D + Sbjct: 131 KLLKR---------------------DAQLFEAKVLKEAELRTYFQKRAHKDGLVFESGV 169 Query: 186 ------------NELQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +E+ K L+SY +D I Q + + I T I ++ + G+ Sbjct: 170 FESLLIKSNFDFSEVAKNLTFLTSYK-KDGHIRAQDISEAIPKTLQDNIFDLTQFILTGQ 228 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKN 285 I A L L+ L +F++ ++ I+ N S +I+ + Sbjct: 229 IDAARDLIRDLRLQGEDEIKLIAVMLGQFRMFTQVKILS-GQNKSETQIVTALSDYLGRK 287 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + P + R +++ + + + + Y + + +L +A Sbjct: 288 VNPYQVKFALRDSRTLTLPFLKKAVTLLIETDYAIKSGTYDKDYLFDVALLKLAHENR 345 >gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Length = 1105 Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 68/194 (35%), Gaps = 21/194 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G ++ L++LS L+ I+ V Sbjct: 630 DADIIYTLQWIASKEDIDIDKDALKLIASRSDGSLRDAQMTLEQLSLLGLK---ISVPLV 686 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL L + Sbjct: 687 QELVGLISDEKLVDLLDLALSADTVNTVKHLRVIMETGVEPLAL-------MSQLATVIT 739 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 + +F K + + ++ + +E + +R+ L + R Sbjct: 740 DILAGSYNFTKERHRRK---FFRRQPLSKE-----DMEKLRQALKTLSEAEKQLRMSNDK 791 Query: 326 LEKNIIFQTILYIA 339 L + +L +A Sbjct: 792 L--TWLTAALLQLA 803 >gi|171920076|ref|ZP_02931506.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701677|ref|ZP_02971375.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902426|gb|EDT48715.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700928|gb|EDU19210.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 314 Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 113/306 (36%), Gaps = 19/306 (6%) Query: 23 VFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +F+ G ++ I E+ F + + I + +++ + + +N N Sbjct: 8 LFLITGDNRLKMDQKINEIATSFDELVKINDQ---EISLISFKNLIEQ-DDLFNS-NKIY 62 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 LF K + ENL K V D L + N II I+S +I +++ KF + Sbjct: 63 LF--KNVNWFENLEHLKNVSD-LIDYFFNNHVAIIITIESTKISTAKKIQETIAKFNHQI 119 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 Y + M ++E L S++K + ++ + NEL K+ Sbjct: 120 TFMTYTNENA--MAFLKEELNQRNLSLNKSIMETIIQKTNFNINFLNNELDKIELINDFL 177 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 + + ICD I ++N Q KI +I L + L K+ +++ Sbjct: 178 KNHDMFDINNFICDYGEYQIFSLLNLLYQHKINESINLINKMLIDKIDELTIINMLATIM 237 Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 I ++ E N + + II ++ + +R ++ + + ++ + Sbjct: 238 STHYLIKLLHEKKYNKNVISSSLNQKPYII----DLNLKLIRNYSAKFLLKKMYDLLQLE 293 Query: 318 HLARKK 323 ++ Sbjct: 294 IKVKEN 299 >gi|306829713|ref|ZP_07462902.1| DNA-directed DNA polymerase III delta subunit [Streptococcus mitis ATCC 6249] gi|304428064|gb|EFM31155.1| DNA-directed DNA polymerase III delta subunit [Streptococcus mitis ATCC 6249] Length = 356 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 102/273 (37%), Gaps = 27/273 (9%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 F GSD+G + +Q K I D + + E+ E+ S F+ +KI Sbjct: 32 FTGSDQGQFGVMKDQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 88 Query: 86 ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135 +++++ + +K+ L EE + ++I + ++ L K+ ++ Sbjct: 89 VILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRDA 148 Query: 136 SVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK---- 190 +V AI + L ++ ++ + LL G +E+QK Sbjct: 149 TVFDAIEP---KEQELRQYFQKCSQTQGLQFVGQSFENLLIKSG----FQFSEIQKNLFF 201 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L SY D +I E+ + + I T I ++ + KI A L L Sbjct: 202 LQSYK-SDDVIEEKDIVEAIPKTLQDNIFDLTQLILAKKIDLARDLVRDLTLQGEDEIKL 260 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + L +F+ ++ I+ + + +I+ Sbjct: 261 IAVMLGQFRTFTQVKILSDA-GQTESQIVSSLG 292 >gi|227498610|ref|ZP_03928754.1| predicted protein [Acidaminococcus sp. D21] gi|226904066|gb|EEH89984.1| predicted protein [Acidaminococcus sp. D21] Length = 363 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 40/351 (11%), Positives = 107/351 (30%), Gaps = 45/351 (12%) Query: 4 IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 + + +F+ K + + G+++ + KK I+ + LN Sbjct: 3 VTADQFLANLRKKGGSCPHLVVAIGNEEYYQKAIKETLKKRIAFDHK----GEELNTWTF 58 Query: 64 QK--NISTFWNEINSTSLFSKKKIILIEN-------------------LSTEKKVLDCLE 102 + N+ I S S F +++ + ++ L+ Sbjct: 59 EDRFNLVDLREAIYSQSFFGGLNWVIVSDPFVLAKTKDATSDPQTKGKSKKKESPLEAFL 118 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDLIE 155 E++ ++++ + I K + + AI+ + LM ++ Sbjct: 119 ELVSDIPATTYVLVQLSAIDKRTS------AAKKLGAIAPLVECQPIKWYQTKALMPFLQ 172 Query: 156 ESLLIGQKSISKEAKQIL----LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 E + AK ++ A + E++K++ + + T V+ + Sbjct: 173 EQAERYGARFDQGAKALIEDYVAAANEVPLLFLEREIEKIALFAGNRKIWTADDVRQMFS 232 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + + A + + A+ L + L+ +LL ++ + Sbjct: 233 QLPQVSNFALGRAIEERNLTLALELIAAERKNDAKFVLALYVVTSSLRLLTQVKAMMAKG 292 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 E + I + + R ++ +++ L + +R Sbjct: 293 ARQDEIAQTLKKNPYI---AKLAMQHARNYSHESLQKALVDLAVLAITSRS 340 >gi|118470289|ref|YP_888841.1| hypothetical protein MSMEG_4572 [Mycobacterium smegmatis str. MC2 155] gi|118171576|gb|ABK72472.1| DNA polymerase III, delta subunit [Mycobacterium smegmatis str. MC2 155] Length = 319 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 104/327 (31%), Gaps = 25/327 (7%) Query: 25 IFYGSDKGLIFELINQFKKNISITY-HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + G ++ L+ + ++I D + L A E+ + E+ S SLF+++ Sbjct: 9 LVLGDEELLVERAVGAILRDIRKRAGSDDVPVDRLRAGEVSTSE---LAELLSPSLFAEE 65 Query: 84 KIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138 +++++E + + V +++I S + L+K+ + Sbjct: 66 RLVVLEAAAEAGKDAVALIASAAADLPPGTVLVVIHSGGGRAKALADQLKKLGAEVHPCA 125 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS--SYCL 196 I D + + +S++ +L +G + EL + Sbjct: 126 RI----TKPAERADFVRSEFRRLRAKVSEDTVSAVLDAVGSN----IRELAAVCSQLVAD 177 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + V+ + +I + + G + A + + + P L + Sbjct: 178 TAGEVDAAAVRRYHSGKAEVKGFDIADKAVVGDVAGAAEALRWAMLAGEPHVVLADALAE 237 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + + ++ + P + Q+ R W++ V E + + Sbjct: 238 AVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQSRRWSRESVAEAMKVVAAL 291 Query: 317 IHLARKKKYLEKNIIFQTILYIAQTAC 343 + + + +AQ A Sbjct: 292 NADVKGVAADADYALEAAVRRVAQLAA 318 >gi|118462813|ref|YP_880994.1| hypothetical protein MAV_1769 [Mycobacterium avium 104] gi|118164100|gb|ABK64997.1| DNA polymerase III, delta subunit [Mycobacterium avium 104] Length = 325 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%) Query: 22 FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + + G ++ L+ E++ + +K + + + A ++ E+ S Sbjct: 6 PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYE---LAELLSP 62 Query: 78 SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF+ ++I+++E + + L ++++ S + Sbjct: 63 SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQSL 120 Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + C K +D + + + +E +L +G D + +L Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + V+ + +I + + G I A + + P L Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + + + + ++ + P + Q+ R W+++ V + + Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + +A+ A N Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325 >gi|217077521|ref|YP_002335239.1| DNA polymerase III, delta subunit superfamily [Thermosipho africanus TCF52B] gi|217037376|gb|ACJ75898.1| DNA polymerase III, delta subunit superfamily [Thermosipho africanus TCF52B] Length = 312 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + +LI E L + E L N+G D A NE++KL + + + Sbjct: 109 EEEKWKNLISEMLKEHGLEVKGEIIDFLFENVGPDEFALYNEIKKLKVF---EKNLNLDI 165 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 +KD+I + +++ A + K + +L D + + +++ F L +I Sbjct: 166 LKDVIHKYTLSKLDDFCFAISEMKEESFRLLKD--VVNDYEPIIIVYTLSSHFISLFRI 222 >gi|167957235|ref|ZP_02544309.1| putative DNA polymerase III, gamma/tau subunits [candidate division TM7 single-cell isolate TM7c] Length = 489 Score = 49.2 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 76/258 (29%), Gaps = 38/258 (14%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-------KNISTFWNEIN 75 ++ G + I+ +D L+ +EI N+ + Sbjct: 39 AYLLTGPRGTGKTSVARILAHKITGLPYD-IEDNNLDIIEIDAASNNGVDNVRDLREKAL 97 Query: 76 STSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK----------N 124 + S+KK+ +I+ + K + L +II + + + I+ + + K Sbjct: 98 VAPIKSQKKVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQR 157 Query: 125 NTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 R I E + I+ I +A ++ GG Sbjct: 158 YNFRLIDESTVADHLAFIA-----------------KEESIKIDTDALNLIAERGGGSLR 200 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 S + L ++ ++ IT V+ + I I A + G I Sbjct: 201 DSISLLDQIQHTESKNGEITRSDVEASLGLATKDEINAIGEAILSGDALKIITAVRQPEL 260 Query: 243 SKMPSHALLHGFLQKFQL 260 + + ++ Q Sbjct: 261 RGIGAVSVADQLYNWIQR 278 >gi|270292526|ref|ZP_06198737.1| DNA polymerase III, delta subunit [Streptococcus sp. M143] gi|270278505|gb|EFA24351.1| DNA polymerase III, delta subunit [Streptococcus sp. M143] Length = 345 Score = 49.2 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 118/334 (35%), Gaps = 27/334 (8%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 F G+D+G L +Q + I D + + E+ E+ S F+ +KI Sbjct: 21 FTGTDQGQFEVLKSQVLRQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 77 Query: 86 ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135 +++++ + +K+ L EE + ++I + ++ L K+ ++ Sbjct: 78 VILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRDA 137 Query: 136 SVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 +V AI + L ++ ++ + LL G +E+QK + Sbjct: 138 TVFDAI---EAKEQELRQYFQKWSQKQGLQFVGQSFENLLIKSG----FQFSEIQKNLLF 190 Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---H 248 D +I E+ + + I T I ++ + KI A L Sbjct: 191 LQSYKSDGVIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKLI 250 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 A++ G + F ++ + + + + +N P + R + ++ Sbjct: 251 AVMLGQFRTFTQVKILSEAGQTESQIASSLGTYLGRNPNPYQIKFALRDSRGISLAFLKR 310 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + + + Y + + + +L IA A Sbjct: 311 AISYLIETDYQIKTGVYEKGYLFEKALLQIAAEA 344 >gi|283769393|ref|ZP_06342292.1| DNA polymerase III, delta subunit [Bulleidia extructa W1219] gi|283104050|gb|EFC05434.1| DNA polymerase III, delta subunit [Bulleidia extructa W1219] Length = 333 Score = 49.2 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 114/324 (35%), Gaps = 30/324 (9%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTS 78 + VF+ G D+ E ++ K+ I + + +A +++ F + + + Sbjct: 2 NHVFLISGDDRCRKEEYLSFLKQTKEIA---DGEVEIFDASKVKYFSFPLFFRSLASRSL 58 Query: 79 LFSKKKIILIENL------------STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKN 124 L + K+++++++ + + + +++I +E + Sbjct: 59 LVNGKRMVILKDAYFLSTCHTKGNDGDLEYFQREMSLYLKDPNDQIVLVIYMDEETLDAR 118 Query: 125 NTLRKIAEKFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 L K +K + +A+ + +E L + + +EA + LL + D Sbjct: 119 KKLVKFLKKEAIDQQTFMALKPWE-----FPAYAKEQLHNEKIFLDQEAFEELLLRVQHD 173 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R + ++KL + + ++++I + + + + N ++G + + F Sbjct: 174 RFLLKKAIEKLQL--VPKKRYGVKEIEEMISYSVEVDVFALGNVFLEGNLKKTWKILRRF 231 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + + A + + + L I + E I+ K K Sbjct: 232 QQAGLDTQAQMALLAFRIRNLYDIKELFELGYDEETIAIRLRMKPYAIRKGLESCSCCSA 291 Query: 301 WNKNLVRETLHKIDHRIHLARKKK 324 + + + L +D I ++ Sbjct: 292 LSLLKILKELGDLDQEIKTGKRDP 315 >gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM 9941] gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941] Length = 429 Score = 49.2 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 11/115 (9%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L L+E L IS EA+ LL GGD +R L L + ++ Sbjct: 171 GDLEALLERGLSELGVGISGEARDYLLRLAGGD---ARRMLNALEVAASGRREVGVAEIE 227 Query: 208 DIICDTHV--------LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + + I + G A+ + + + Sbjct: 228 RALGQRALRYGREEHYDVVSAFIKSVRGGDPDAALHYLARMIEAGEDPVFIARRL 282 >gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748] Length = 922 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 ++ LEI + +E+ + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + + Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDPA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGTITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + LA + ++ +Q + L Sbjct: 260 DGPKLLSYIHDALAEGRDATQIMEALIQHVRAL 292 >gi|329728354|gb|EGG64791.1| putative DNA polymerase III, delta subunit [Staphylococcus aureus subsp. aureus 21189] Length = 117 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 +S + YG L+ + + + D F+ V N E + E + Sbjct: 1 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58 Query: 79 LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIK 117 FS KK IL++N + EK +D L E I K ++I+ + Sbjct: 59 FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFE 106 >gi|227495100|ref|ZP_03925416.1| DNA polymerase III, delta subunit [Actinomyces coleocanis DSM 15436] gi|226831552|gb|EEH63935.1| DNA polymerase III, delta subunit [Actinomyces coleocanis DSM 15436] Length = 310 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 112/335 (33%), Gaps = 47/335 (14%) Query: 30 DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89 ++ L + + + + + A + + S SLF++ + + I Sbjct: 7 EESLFADRAVSLIRKNLLKADPGTEISTVEAATYES--GQLAVAV-SPSLFAESRFVYIP 63 Query: 90 NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY----- 143 + +++ L + + +I+++ N N+ RK+ L + Y Sbjct: 64 QVEQANTALVEDLLKYVTTPEPQVVILLRHNG---GNSARKLL-TELQNLQVPAYIAPKL 119 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL-QKLSSYC-----LE 197 ++ + +I+E+ I +A L+ +A R+EL + L+ Sbjct: 120 ANDGERIKCVIDEA-RSLGGRIDNDAAAALV-------LAMRSELPEILAVVSQLVSDYP 171 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 +IT V++ + E++ A I G + A+ L+ + ++ K Sbjct: 172 GEVITANLVEEYQAGKREVDGYEVVQAAIDGDLATALTHLRHALSCGVTGPSITGAMAFK 231 Query: 258 FQLLEKI----HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + L K+ ++ + + SLR WN+ +RE Sbjct: 232 LRQLAKVSTIPRRTAYEMGMAPFMVQKTQG-------------SLRTWNEMALREAFR-- 276 Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 I A K + L I A + + F Sbjct: 277 ACAIADAEVKGESRDPVYALEKLLITV-ARRGSKF 310 >gi|41408323|ref|NP_961159.1| hypothetical protein MAP2225c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396679|gb|AAS04542.1| hypothetical protein MAP_2225c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 325 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%) Query: 22 FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + + G ++ L+ E++ + +K + + + A ++ E+ S Sbjct: 6 PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPINRMRAGDVSTYE---LAELLSP 62 Query: 78 SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 SLF+ ++I+++E + + L ++++ S + Sbjct: 63 SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQSL 120 Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + C K +D + + + +E +L +G D + +L Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + V+ + +I + + G I A + + P L Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 + + + + ++ + P + Q+ R W+++ V + + Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 + + + +A+ A N Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325 >gi|15612597|ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans C-125] Length = 564 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L+ ++E L EA ++ G S + L + S+ D +T + V Sbjct: 180 NDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFA--DERVTVEDV 237 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 I + +++ + +G+ A+ L + LA+ + + ++ L Sbjct: 238 LAITGAVSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLMLFKA 297 Query: 267 IKECSNI 273 E S + Sbjct: 298 APEASQL 304 >gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae WSM419] gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae WSM419] Length = 625 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 10/187 (5%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + + Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEVET 258 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ I+G + A+ + +L L+ ++ Sbjct: 259 VRSMLGLADRARIVDLFEHIIKGDVAAALHEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + N I++ + RIW L I AR Sbjct: 319 YVPDAINDQSLSEIER-RHGAEFAGSVAVTTLSRIWQM-----LLKGIPEAESSARPAGA 372 Query: 326 LEKNIIF 332 E +I Sbjct: 373 AEMVLIR 379 >gi|45644668|gb|AAS73056.1| predicted DNA polymerase III, delta subunit [uncultured marine gamma proteobacterium EBAC20E09] Length = 325 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 18/206 (8%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 K++ KS K +F YGS+ LI + +Q FS ++ E K+ Sbjct: 10 KYLDKSPK-------IFFLYGSEIVLINDSADQINDFFKSKG---FSERIILTKENFKDA 59 Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KN 124 + SLF+ K II I + S+ + + I ++++II + IK KN Sbjct: 60 HKIIMQNAGGSLFASKVIIEIIHNSSGTTLPKDILSIFDSQNFDNVVIIVRSTIKKVNKN 119 Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + K+ + + L I C +++ L KS++ E + L + G+ +A Sbjct: 120 SAWVKLID--SKALIIECNKLKTYEEKAWVKDRLDFMNKSVADEYTERLTSMFAGNLVAQ 177 Query: 185 RNELQKL-SSYCL--EDILITEQHVK 207 NE+ L +Y E+ I + Sbjct: 178 NNEINLLKITYSKNTENKKIEYDDAE 203 >gi|24379101|ref|NP_721056.1| DNA polymerase III subunit delta [Streptococcus mutans UA159] gi|24377002|gb|AAN58362.1|AE014906_8 conserved hypothetical protein [Streptococcus mutans UA159] Length = 346 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 111/358 (31%), Gaps = 67/358 (18%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G ++ F I D F + + + + + + S Sbjct: 18 ITVLSGEDFGQYGQMKKLFFNKIGFESSDLNFSYFDMSETSYQDAEMD-------LESLP 70 Query: 79 LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +KI++ +N + L E + + + ++I + ++ L Sbjct: 71 FFADEKIVIFDNFADITTDKKTFLNNNELKRFEAYLGNPLSSTKLVICASGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR--- 185 K+ ++ + L + E + D + Sbjct: 131 KLLKR---------------------DAQLFEAKVLKEAELRTYFQKRAHKDGLVFESGV 169 Query: 186 ------------NELQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +E+ K L+SY +D I Q + + I T I ++ + G+ Sbjct: 170 FESLLIKSNFDFSEVAKNLTFLTSYK-KDGHIRAQDISEAIPKTLQDNIFDLTQFILTGQ 228 Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKN 285 I A L L+ L +F++ +I I+ N S +I+ + Sbjct: 229 IDAARDLIRDLRLQGEDEIKLIAVMLGQFRMFTQIKILS-GQNKSETQIVTALSDYLGRK 287 Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 + P + R +++ + + + + Y + + +L +A Sbjct: 288 VNPYQVKFALRDSRTLTLPFLKKAVTLLIETDYAIKSGTYDKDYLFDVALLKLAHENR 345 >gi|307637918|gb|ADN80368.1| hypothetical protein hp908_1246 [Helicobacter pylori 908] gi|325996522|gb|ADZ51927.1| hypothetical protein hp2018_1210 [Helicobacter pylori 2018] gi|325998110|gb|ADZ50318.1| putative DNA polymerase III delta subunit [Helicobacter pylori 2017] Length = 340 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKRNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII---IKSNEIKK----NNTLRK 129 +++++ + + KK + + + + N +II ++ K ++T+ K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYHSKSDTTKYKYTSDTIIK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E + Q IS L D S N Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANVLQLDISNHLLNALFETNNEDLGVSFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT ++++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEYIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + + K + Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286 >gi|58697229|ref|ZP_00372626.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila simulans] gi|58536440|gb|EAL59856.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Drosophila simulans] Length = 234 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 19/187 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153 + L + + + + I+ + EIKK + I+ C + ++ + Sbjct: 47 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 95 Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 I E L SI K A +++ + G + + + Y +D I+ ++V DI Sbjct: 96 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 154 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A ++G + A+ + D + ++ G LQ QL+ + I KE Sbjct: 155 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 213 Query: 270 CSNISFE 276 N E Sbjct: 214 IDNAVTE 220 >gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium nodulans ORS 2060] gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium nodulans ORS 2060] Length = 605 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 55/171 (32%), Gaps = 4/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ +++ + EA + G S + L + +T + Sbjct: 213 EAGTLIAHLQKICEAEGVAAEPEALAGIARAAEGSVRDSLSLLDQAI--AHGAGRVTAET 270 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G +A + +L + L+ ++ Sbjct: 271 VRDMLGLADRARIIDLFEAAMRGDAPSAFAELRAQHEAGADPSVVLQDLAEFTHLVTRLK 330 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + E + + + R ++ R W ++ + + ++ Sbjct: 331 VAPETARSDSALSEAERARGSDFADRLSVRALSRAW--QILLKAIPEVQAA 379 >gi|309800681|ref|ZP_07694822.1| DNA polymerase III subunit delta [Streptococcus infantis SK1302] gi|308115688|gb|EFO53223.1| DNA polymerase III subunit delta [Streptococcus infantis SK1302] Length = 229 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 24/211 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + Q K I D + + E+ + + E+ S F+ +K Sbjct: 20 LFTGADQGQYEIMKTQVLKQIGYDSAD-LNFAYFDMKEV--DYKSLELELVSLPFFADEK 76 Query: 85 IILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I++++ +L+T KK L EE + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFLDLTTAKKRYLSDDELKAFEEYLENPSPTSKLVIFAEGKLDSKRRLVKLLKRD 136 Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + A+ ++ + ++ + LL G +E+QK Sbjct: 137 AKIFEALEPKEQEMRS---YFQKWAQEQGLTFDGKSFEQLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEI 221 + L + LITE+ + + I T I ++ Sbjct: 190 FLLSYKDGGLITEEDIVEAIPKTLQDNIFDL 220 >gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1088 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 77/239 (32%), Gaps = 25/239 (10%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 + +++ + + ++ S + + + +KF C +++ ++ Sbjct: 478 ISKVVERAPRRVVFVLISPNLDLPHIIMSRCQKFFFPKLKEC------DIVNTLQWICTS 531 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + ++A +++ + G + L +LS IT V+++ + Sbjct: 532 DGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRITMPLVQELAGLVSDDKLVN 588 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 +++ + N + + + +L L I +F + + Sbjct: 589 LLDLALSADTANTVKALRDITETGVEPLSL-------MSQLATIITDILAGTYTFAQ--E 639 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + KR L + + +R+ L + R + + +L +A Sbjct: 640 RIRRKFF--KRPTLSKE----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 691 >gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii DSM 12563] Length = 520 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 59/191 (30%), Gaps = 10/191 (5%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L +++ L +EA ++ G S L+K+ +Y + IT V Sbjct: 183 EDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVN 242 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ + +++E + + + + + ++ +++ I Sbjct: 243 AVVGGNNFSFVKEFFDIIMSENKKSYFEFVKKLFEDAVDPRTFTNSVIEYMRVVLMIKSG 302 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327 + + I +R+ L+ ++ + + L I R Sbjct: 303 IDDIKLLE----------ITENERDDLKVFANHYSDDEIERILDYILLTEERIRSASNPR 352 Query: 328 KNIIFQTILYI 338 + +L + Sbjct: 353 TIFEMRMLLLL 363 >gi|307700533|ref|ZP_07637568.1| DNA polymerase III, delta subunit family protein [Mobiluncus mulieris FB024-16] gi|307614284|gb|EFN93518.1| DNA polymerase III, delta subunit family protein [Mobiluncus mulieris FB024-16] Length = 435 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220 + + A L+ LG + +L + V+ + + Sbjct: 254 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 313 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I +A + G + A+ L + ++ K + L ++ + ++ Sbjct: 314 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 372 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + M R ++ L W+ + L + + + + IL + + Sbjct: 373 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 431 Query: 341 TACK 344 A K Sbjct: 432 CARK 435 >gi|315613376|ref|ZP_07888285.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis ATCC 49296] gi|315314611|gb|EFU62654.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sanguinis ATCC 49296] Length = 345 Score = 48.8 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 120/335 (35%), Gaps = 27/335 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + +Q K I D + + E+ E+ S F+ +K Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76 Query: 85 IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134 I+++++ + +K+ L E + ++I + ++ L K+ ++ Sbjct: 77 IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136 Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 +V AI + L ++ ++++ + LL G +E+QK Sbjct: 137 ATVFDAI---EAKEQELRQYFQKWSQTQGLKFAEKSFENLLIKSG----FQFSEIQKNLL 189 Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--- 247 + D +I E+ V + I T I ++ + KI A L Sbjct: 190 FLQSYKSDGVIEEKDVVEAIPKTLQDNIFDLTQFILAKKIDLARDLVRDLTLQGEDEIKL 249 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 A++ G + F ++ + + + + +N P + R + ++ Sbjct: 250 IAVMLGQFRTFTQVKILSEAGQTESQIASSLGTYLGRNPNPYQIKFALRDSRGISLAFLK 309 Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + + + Y + + + +L IA A Sbjct: 310 RAISYLIETDYQIKTGVYEKGYLFEKALLQIAAEA 344 >gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti BL225C] Length = 626 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + + Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ I+G + A+ + +L L+ ++ Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + N I++T + R+W L I AR Sbjct: 319 YVPDAVNDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372 Query: 326 LEKNIIF 332 E +I Sbjct: 373 AEMVLIR 379 >gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti 1021] gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium meliloti 1021] Length = 626 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + + Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ I+G + A+ + +L L+ ++ Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + N I++T + R+W L I AR Sbjct: 319 YVPDAVNDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372 Query: 326 LEKNIIF 332 E +I Sbjct: 373 AEMVLIR 379 >gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral taxon 158 str. F0412] Length = 856 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 78/222 (35%), Gaps = 17/222 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 ++ LEI + +E+ + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + + Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDPA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGTITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + LA + ++ +Q + L + + Sbjct: 260 DGPKLLSYIHDALAEGRDATQIMDALIQHVRALLVGKVATDA 301 >gi|313672436|ref|YP_004050547.1| DNA polymerase iii delta [Calditerrivibrio nitroreducens DSM 19672] gi|312939192|gb|ADR18384.1| DNA polymerase III delta [Calditerrivibrio nitroreducens DSM 19672] Length = 303 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 82/230 (35%), Gaps = 15/230 (6%) Query: 34 IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST 93 I + + K++ F L +I F+ +S LF ++ I ++++ Sbjct: 19 IEDKLRDLVKDVDQDSVRYFYGDEL-------DIEGFFEYTSSIPLFYEQNIAVLKHAED 71 Query: 94 EK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152 K K+ + + E + K N +I+ +E +K E F ++ + K Sbjct: 72 LKEKLKNEILEGLSKIEANFVILTFLDEKPVEENYKKFKESFNIII------EPKRSFNA 125 Query: 153 -LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 +I++ + + + + D + +NEL+K+ + + +++ + ++ Sbjct: 126 QMIQQYFKDEGLIVGVDTAKYIFEMCNKDPMILKNELEKIKIFYNYEKPRSDEEIISLVS 185 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + I + I + + + + + + + L Sbjct: 186 FSRSESIYQFIKNFFSKDLNKTLAIFKVIVDDGESVERIFYELSRHIVSL 235 >gi|297566912|ref|YP_003685884.1| DNA polymerase III subunit delta [Meiothermus silvanus DSM 9946] gi|296851361|gb|ADH64376.1| DNA polymerase III, delta subunit [Meiothermus silvanus DSM 9946] Length = 311 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 22/210 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGD---------RIASRNELQKLSSYCLE 197 L+ IE + Q L + LG A + EL KL+ Sbjct: 107 GKDLVRWIENRAKAMGLKTNAAIHQYLASLLGSRSSAENPALGLEALQRELDKLTLVTPP 166 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 IT + V+ ++ + +++ A +GK+ A + +L + Sbjct: 167 ---ITLEKVQALVALEAPISGFDLVRAVTEGKVSAAFRQLQGLMERGEDPIRILGALSWQ 223 Query: 258 FQLLEK--IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + L + H+ ++ E + L +S+ + ++ L + Sbjct: 224 YAKLARAWAHLNEDPLLGESEAASLLGMHPYAAKQTLALAKSV---DAEMLDRALETLVK 280 Query: 316 RIHLAR--KKKYLEKNIIFQTILYIAQTAC 343 A+ + L + + + ++ A Sbjct: 281 AEQAAKTGRDPRLA---LEKAVAELSAQAR 307 >gi|255018444|ref|ZP_05290570.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL F2-515] Length = 172 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 11/158 (6%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G++ +I E NI F+ L+ E+ I E S F Sbjct: 15 PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72 Query: 82 KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 K++++ N L+TEK LE + + + ++ + K + + Sbjct: 73 DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170 + I N+ L IE L +S+EA Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAI 170 >gi|237737232|ref|ZP_04567713.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229421094|gb|EEO36141.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 330 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 76/171 (44%), Gaps = 14/171 (8%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 ++ F++ +++ S+FS K++++++ + + K + + + + N+ III Sbjct: 35 FDASLDEVTQFFDSVSTNSIFSPKELVILKRVESFKNLEGIAKSLKMYNLTQKEIIIIYE 94 Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171 E K N + +K + F + I CY + K ++ +++ L I + K Sbjct: 95 EFLNDFGKIKNPIPKKTLDSFKEIAEIICYRKENEKKAIIFYLQQELNISEYEAEK---- 150 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + +G D +NE +K+ ++ L+ +K ++ ++ +I Sbjct: 151 -FVELVGDDFFKVKNEAEKVKNF-LDGETFNLDKIKPLLSINEDFNLKTLI 199 >gi|225868910|ref|YP_002744858.1| DNA polymerase III delta subunit [Streptococcus equi subsp. zooepidemicus] gi|225702186|emb|CAW99900.1| putative DNA polymerase III delta subunit [Streptococcus equi subsp. zooepidemicus] Length = 353 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 25/274 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + + G D G + K I+ D F + + + + S Sbjct: 18 ITVVAGEDIGQYSHMKALLLKKIAFDQADLTYSYFDMSEALYQTAEMD-------LVSMP 70 Query: 79 LFSKKKIIL---IENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +K+++ + +++T KK L E+ + + ++I + ++ L Sbjct: 71 FFADQKVVIFDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI ++ L P ++ S + A LL D + Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 L +Y + IT + + I + + ++ +QGKI A L S Sbjct: 189 TFLKAYK-KSGSITVEDIAQAIPKSLRDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 L+ L +F+L ++ + S + ++++ Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280 >gi|255321381|ref|ZP_05362541.1| DNA polymerase III, delta subunit family [Campylobacter showae RM3277] gi|255301534|gb|EET80791.1| DNA polymerase III, delta subunit family [Campylobacter showae RM3277] Length = 328 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 112/329 (34%), Gaps = 23/329 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ YG+D I F K I + D F ++ L E + + + SLF Sbjct: 19 FLLYGAD----EYQIELFAKEILAKFKD-FEILSLYYDEYDFEAAR--SHLCEPSLFGDS 71 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVLAISC 142 ++ ++ S +K L+ +I + + + ++ + + + + Sbjct: 72 PLLHVK--SNKKIPTKELKILIEVCKNGGAFVFEL--FEPDSK--AVFDTQKAFGVNFAR 125 Query: 143 Y--PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + P + ++L+ + +I+K A L + + +EL KL+S + Sbjct: 126 FFKPGSPEEAVNLLGRQAVKMNLNITKNALFELYRIHNENLYLAASELNKLASL---NEP 182 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + E V+ ++ + ++ + I K A ++ + F Sbjct: 183 VNENIVRSLVFSLSSVSFDDFFDKFIALKDIRAD-FFSCADDGNFNEILFINSLYRAFFR 241 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 L K+H + + K P N L+ N +E ++ Sbjct: 242 LFKLHAGIKITGQFDIKETLGYAPP--PNVANELKRQCLAVNLKAYKEIFTALNLAEFEL 299 Query: 321 RKKKYLE-KNIIFQTILYIAQTACKNNNF 348 + L+ K + +L + KN+ + Sbjct: 300 KTNSALDKKTFLLSCVLGLQNLIGKNSKY 328 >gi|304360729|ref|YP_003856860.1| putative DNA polymerase III [Clostridium phage phiCTP1] gi|302495588|gb|ADL40368.1| putative DNA polymerase III [Clostridium phage phiCTP1] Length = 302 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 36/310 (11%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +++F G + G++ + Q K+ + ++ L+ ++N+ SLF Sbjct: 16 RNLYVFTGDEVGIMNMYLKQIKQKVV------WTSSFLD----------VARKLNNNSLF 59 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K I + + +L E I I II+ + K + +K E I Sbjct: 60 DSNKDT-IYVVYQDDSLLKMDTEKIRNLIGTSHIILVYPHLDKRSKFKKAFESD----LI 114 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 P + L+ I + + IS L+ GG+ EL KL Sbjct: 115 EFKPLTRKQLIYYITK-----KVDISDRVAGELVDLCGGNFTRINLELDKLV----RLGP 165 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+ + D I I + NA + K + S +L F+ Sbjct: 166 ISINTIYDNIAPAPKDVIFDFCNAVVSKKQELSFDYLVNLKYRNESSIKILSILYTTFRN 225 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 + K + + NI +++++ ++ N + + + I H + Sbjct: 226 TMIVQAQKNKLDKDI-----AAKYNISIWIVKNIRKTMGKFSLNQLVKIMDIIQHAE-QS 279 Query: 321 RKKKYLEKNI 330 K LE+ I Sbjct: 280 IKTGKLEEAI 289 >gi|291320380|ref|YP_003515643.1| hypothetical protein MAGa4760 [Mycoplasma agalactiae] gi|290752714|emb|CBH40688.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 320 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 125/341 (36%), Gaps = 53/341 (15%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + GS+K LI + + + KK + + + + + ++ SLFS Sbjct: 1 MIFICGSEKFLIEQEVEKIKK---ENSDKTIEIFRFDDQALVSD---LISSASANSLFSG 54 Query: 83 KKIILIENL-----STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKF 134 K+ LI NL +T K D ++++I N + + I + I K Sbjct: 55 AKLFLIYNLDFFEKATFKDESDNVKDLINALKINRQDKFVFIN----------QNIFSKD 104 Query: 135 TSVLAISC---YPDNKIHLMDLIEESLLIGQK-------------SISKEAKQILLANLG 178 + I + +N+ + + + + IS A ++L++ + Sbjct: 105 KIAVNIWTKFIFENNEHKVKMIEAKEMSESNLFSLAKSLTNRYNIHISDGAIKLLISKVN 164 Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238 D + +EL+KLS+ + +IT + ++ I NA + Sbjct: 165 NDSLMLNSELEKLSNL---NSIITPEIIESSTETLLGEDIFAFSNALETNDLGIIWARYK 221 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + L+ Q F + +I+ K C +S +++ + I + + L Sbjct: 222 EKMLEGVEINVLIGQISQIFIIAHQIYAYKVCQ-LSIDQLSKDLR--INSYRIKKISYFL 278 Query: 299 RIWNKNLVRE---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336 N +++ +L K+D + K + + I F+ L Sbjct: 279 SKVGINKIKKMILSLSKLDKDV----KNGLVSEKIGFERFL 315 >gi|157736501|ref|YP_001489184.1| DNA polymerase III subunit delta [Arcobacter butzleri RM4018] gi|157698355|gb|ABV66515.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 326 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 106/323 (32%), Gaps = 25/323 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++FYG L+ + + + L E + +++ +SLF Sbjct: 16 FKTYMFYGQSTFLVEQYSLSIARMFGQDD----EIEKLYFEEYDFKYAK--DKLLQSSLF 69 Query: 81 SKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----T 135 S I+ I+ + K+ LD L E N + ++I + + K E T Sbjct: 70 SSNNILFIKIDKKIPKRELDVLIEACNANPDSTLVIACMGD----SDF-KTMETSFSLKT 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + + +E + Q A L D N+L+KL+ Sbjct: 125 NSACVRFFQPTDLEATKFLEYEAKMLQIQYEVSALNHLYFMHKNDLALCVNDLKKLAIL- 183 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D LIT V + E+ + + GK ++ L M LL Sbjct: 184 --DELITINIVDTHCFGIGSVNFEDFLYDLLAGKDISSD--LSSILEEGMNEVFLLTQVT 239 Query: 256 QKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 Q L I + + ++I+ I K++ L +++ + + L + Sbjct: 240 SFIQQLFMISSYARTLGQPNPKEILGYIPPKNIWEKKSKLAINIK---PEVFQNMLEYLL 296 Query: 315 HRIHLARKKKYLEKNIIFQTILY 337 + K +N+ Q L Sbjct: 297 DIELDFKTSKVENQNLYLQATLR 319 >gi|227874734|ref|ZP_03992888.1| DNA polymerase III, delta subunit [Mobiluncus mulieris ATCC 35243] gi|227844680|gb|EEJ54835.1| DNA polymerase III, delta subunit [Mobiluncus mulieris ATCC 35243] Length = 405 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220 + + A L+ LG + +L + V+ + + Sbjct: 224 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 283 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I +A + G + A+ L + ++ K + L ++ + ++ Sbjct: 284 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 342 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + M R ++ L W+ + L + + + + IL + + Sbjct: 343 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 401 Query: 341 TACK 344 A K Sbjct: 402 CARK 405 >gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] Length = 514 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 93/243 (38%), Gaps = 34/243 (13%) Query: 1 MATI----ESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFS 54 MA + + + ++K ++ V + G L N + F Sbjct: 12 MAEVVGNTKIKEELKKWIEDYLQGKPVKPVLLVGPPGCGKTTLANALANDYG------FE 65 Query: 55 LVVLNALEIQ--KNISTFWNEIN-STSLFSKKKIILIENLST-----EKKVLDCLEEIII 106 ++ LNA + + I + S SL K+ +I+++ + ++ + + +II Sbjct: 66 IIELNASDKRNKDVIKQVVGSASVSKSLSGKRALIILDEVDGISGNSDRGGVSEILKIIK 125 Query: 107 KNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 + II+ +N+I K + +LR ++ I N ++ ++ L + Sbjct: 126 T--AKNPIILTANDIYKPSLMSLRNAC----KIVKIGSVHTN--SIVPVLRRIALKEGFN 177 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + +I+ + GGD A+ N+L+ L+ + + VK++ I + I Sbjct: 178 VDDSVLKIIAKHAGGDVRAAINDLESLAL----GNDLNLEEVKELPDRDVEKNIFDAIRI 233 Query: 225 TIQ 227 + Sbjct: 234 IFK 236 >gi|9758675|dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana] Length = 900 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 70/192 (36%), Gaps = 21/192 (10%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++D ++ + I K+A +++ + G + L++LS I+ V++ Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + N + + + + AL+ + +I Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATVIT 625 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKYLE 327 + S++ + ++ ++ + +E + +++ L + R L Sbjct: 626 DILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSNDKL- 678 Query: 328 KNIIFQTILYIA 339 + +L +A Sbjct: 679 -TWLTAALLQLA 689 >gi|257470503|ref|ZP_05634593.1| hypothetical protein FulcA4_14249 [Fusobacterium ulcerans ATCC 49185] gi|317064710|ref|ZP_07929195.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313690386|gb|EFS27221.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 330 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 14/160 (8%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 QK F +++ S+F+ K+++++ K + + + + N+ III Sbjct: 35 FDASQKEDELFLQAVSTNSIFNPKELLILRRAEDIKNIESFFKSLKLFNLSQKEIIIVYE 94 Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171 E K N L +K + + I CY + K + ++ L + + K Sbjct: 95 EFLNDYGKIKNPLSKKALDSIGEIAQIICYRKENEKKAITFYLQHELNVSEYEAEK---- 150 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + +G D +NE++K+ +Y L+ + V I+ Sbjct: 151 -FVEIIGDDFFKIKNEVEKVKNY-LDGDIFNLTKVMPILS 188 >gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium tumefaciens str. C58] gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str. C58] Length = 624 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L + + Sbjct: 200 AADLVGLFTAIAGKEGFEAEPQALSMIARAAEG---SARDGLSLLDQAIAHGGGRVEAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + + +L+ L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALSEFNGQYEAGANPVVVLNDLADFTHLVTRMK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + + I++T + + RIW Sbjct: 317 YVPDAAEDPSLSEIERTR-GAEFAETIAVTALSRIW 351 >gi|289435979|ref|YP_003465851.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 578 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +E L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|269976848|ref|ZP_06183823.1| DNA polymerase III, delta subunit [Mobiluncus mulieris 28-1] gi|269935045|gb|EEZ91604.1| DNA polymerase III, delta subunit [Mobiluncus mulieris 28-1] Length = 273 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220 + + A L+ LG + +L + V+ + + Sbjct: 92 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 151 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I +A + G + A+ L + ++ K + L ++ + ++ Sbjct: 152 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 210 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + M R ++ L W+ + L + + + + IL + + Sbjct: 211 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 269 Query: 341 TACK 344 A K Sbjct: 270 CARK 273 >gi|210616703|ref|ZP_03291191.1| hypothetical protein CLONEX_03412 [Clostridium nexile DSM 1787] gi|210149717|gb|EEA80726.1| hypothetical protein CLONEX_03412 [Clostridium nexile DSM 1787] Length = 298 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 27/252 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 ++ YG++ LI + FKK I P L E + I +F + L Sbjct: 2 PKWLVYGTEPFLIDK----FKKEILQNVEAP-EFNYLETNEFTEEIGSF---LCQLPLLG 53 Query: 82 KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K +LI + T K L E + K + I + + K L K + Sbjct: 54 NAK-VLIYHAETLKD-CSELVEFLSKRGKKAKVYIFAKTVDKRTKLYKQFSNDEIKIF-- 109 Query: 142 CYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198 D L I + + I+++A Q L + E+ Y LE Sbjct: 110 ---DKVRMDVLQKTIIQHIKNAGCEITEDAYQQYLRQI----NYYSEEINLYDVLYSLER 162 Query: 199 ----ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHG 253 IT VK + + + +I + + L + + +L Sbjct: 163 LCTSQSITIDDVKKTVVNNESENVFSLIQLIMNQQYDEIYHQVALILQGQSNNAINVLSL 222 Query: 254 FLQKFQLLEKIH 265 L+ ++L KI Sbjct: 223 LLRNYRLAYKIR 234 >gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3] Length = 625 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 49/156 (31%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L + + Sbjct: 200 AADLVGLFTAIAGKEGFEAEPQALSMIARAAEG---SARDGLSLLDQAIAHGGGRVEAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ I+G + A+ + + +L+ L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHIIKGDVAAALSEFNGQYEAGANPVVVLNDLADFTHLVTRMK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + + I++ + + RIW Sbjct: 317 YVPDAAEDPSLSEIERVR-GAEFAETIAVTALSRIW 351 >gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti AK83] Length = 626 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + + Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ I+G + A+ + +L L+ ++ Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + N I++T + R+W L I AR Sbjct: 319 YVPDAINDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372 Query: 326 LEKNIIF 332 E +I Sbjct: 373 AEMVLIR 379 >gi|79530257|ref|NP_199384.2| ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332007905|gb|AED95288.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 966 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 70/192 (36%), Gaps = 21/192 (10%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++D ++ + I K+A +++ + G + L++LS I+ V++ Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + N + + + + AL+ + +I Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATVIT 625 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKYLE 327 + S++ + ++ ++ + +E + +++ L + R L Sbjct: 626 DILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSNDKL- 678 Query: 328 KNIIFQTILYIA 339 + +L +A Sbjct: 679 -TWLTAALLQLA 689 >gi|78357484|ref|YP_388933.1| hypothetical protein Dde_2441 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219889|gb|ABB39238.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 324 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 10/155 (6%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L + A + A L D A+RNEL+KL+ D +I+ Sbjct: 136 DERSLQGFASAWAQKRGVRFAPGALPAICAALPADATAARNELEKLALAAGADGVISA-D 194 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + L I I A G + + + S + L+ FL Q ++ Sbjct: 195 TSALGDHAADLDIFGFIRAVQSGTQH--DKVWRKVMGSSSANDGLVFQFLGMLQREARMM 252 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 + + + LR Sbjct: 253 WQLLSGE-------SVRLPAAVLQSKTRTAQQLRY 280 >gi|227495916|ref|ZP_03926227.1| DNA polymerase III, delta subunit [Actinomyces urogenitalis DSM 15434] gi|226834532|gb|EEH66915.1| DNA polymerase III, delta subunit [Actinomyces urogenitalis DSM 15434] Length = 342 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 99/324 (30%), Gaps = 26/324 (8%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94 + +++ +V L A + S + + S SLF + K++ + L Sbjct: 37 ADRAVARVLSLARQKDPTTEVVRLEAATYE---SHQLDALVSPSLFGEPKLVHVPALEQM 93 Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-------DNK 147 L + ++++ ++ N R +K LA S YP + Sbjct: 94 SDALLADLLAYASHADPDVVVL----LRHNGGQR--GKKLLDALAASPYPVVTIEAVKSP 147 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L+ + + I EA L+ LG D + + +L + IT + V Sbjct: 148 KDKAALVTADVRAAGRRIETEAVGALVDALGSDLRELLSAVDQLV--ADVEGTITVEAVN 205 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + +A G + A+ +A+ L+ K + L + Sbjct: 206 TYYAGRFEATGFTVADAAAAGNVAKAVTALRHAIATGTEPVPLVAALAMKIRQL--ARVA 263 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327 + + P + + + L W+ + + + + + Sbjct: 264 ASGGRQMSPRDLGMA-----PWQVDRARRELAGWSDDALAYAIQAVARADAEVKGASRDP 318 Query: 328 KNIIFQTILYIAQTACKNNNFYKR 351 + + + +L I A R Sbjct: 319 VHAVERAVLAICN-ARHGRIPRPR 341 >gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL S4-171] Length = 547 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +E L + ++A I+ G + + L ++ SY +T + Sbjct: 148 TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 205 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 206 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 259 >gi|188528037|ref|YP_001910724.1| DNA polymerase III subunit delta [Helicobacter pylori Shi470] gi|188144277|gb|ACD48694.1| DNA polymerase III subunit delta [Helicobacter pylori Shi470] Length = 340 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 29/282 (10%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSFFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 +++++ + KK + + + + N +II + K Sbjct: 73 GSSLVILKLDFVLHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129 Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183 ++ + S D IH I +E IS L D Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLRFLQERANSLHLDISSHLLNALFETNNEDLSI 189 Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 S N+L KL+ + I + ++++ + + ++++I K + + + D+ L Sbjct: 190 SFNDLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244 Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + S + K + Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTSGLMDAKEVLGYAPP 286 >gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus Nankai-3] gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3] Length = 474 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 28/230 (12%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNIST--FWNEINSTSLF 80 + G L N + F L+ LNA + K+I +S S+ Sbjct: 41 VLLVGPPGCGKTTLTNALANDYG------FELIELNASDKRNKDIIRQIVGGASSSKSIT 94 Query: 81 SKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEK 133 K+ +I+++ + ++ + + +II + II+ +N+I K + +LR + Sbjct: 95 GKRVLIVLDEVDGLSGNSDRGGVSEIIKIIKN--AKNPIILTANDIYKPSLMSLRTVC-- 150 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 +++ I N ++ ++ L + + +I+ + GGD ++ N+L+ L+ Sbjct: 151 --NIVKIGSVHTN--SIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAINDLESLAM 206 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 E +V+++ I + I + Y+ + A L Sbjct: 207 ----GNTFDEDNVRELPDRDTDKSIFDAIRIIFKTTHYDISLEATRDLKE 252 >gi|315453474|ref|YP_004073744.1| DNA polymerase III subunit delta [Helicobacter felis ATCC 49179] gi|315132526|emb|CBY83154.1| DNA polymerase III, delta subunit [Helicobacter felis ATCC 49179] Length = 325 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 35/294 (11%) Query: 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77 + V + YG + I +++ K + + + + ++ Sbjct: 12 RATPRVALLYG-EPFYIDHYVSELLKRYAQAEQYRYYFGDYDFKAV-------LEVLSQD 63 Query: 78 SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-----------IKSNEIKKNN 125 SLF + ++L++ + K + L E + + +II + + Sbjct: 64 SLFGEGSVVLLKLDKKPASKEITALLEAVATCPKSALIIGFYPLNKNTYTQECKQFSSQF 123 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 K+ E V P ++L+++ + ++ +A +LL D + Sbjct: 124 KHPKLMETLVEVRFFPPKPSE---FLELLQKRAQALKLNVDSQALSLLLE--YNDIGMAY 178 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 EL KL+ I V+ + + E + A + K + + + + + Sbjct: 179 QELDKLALL---GRPINTADVQTHMHGGGAIEAERLFEALFERKGDS-LAILNRLQQEGL 234 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299 L + F L + + K I + LR Sbjct: 235 DGVELARVVGRYFYQLALFAMHLKMHGGVQAKEILGFNPP------PAVSAQLR 282 >gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella anatipestifer DSM 15868] Length = 559 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/318 (11%), Positives = 94/318 (29%), Gaps = 39/318 (12%) Query: 38 INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92 + + T D FS + L+A +I +++ K K+ +I+ + Sbjct: 60 ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146 + + + + + + I I+ EK + I C + Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167 Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + + S +A ++ G + + +L ++ IT Sbjct: 168 TIEDIQGHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +++ +I+ I N ++ + + H + G + Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI--HLARKK 323 + N S +I+ + + E + W + + + ++ + + K Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYADINYKSSKN 334 Query: 324 KYLEKNIIFQTILYIAQT 341 L I + + Q Sbjct: 335 PRLTVEIALMQLASLTQE 352 >gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM] Length = 559 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/318 (11%), Positives = 94/318 (29%), Gaps = 39/318 (12%) Query: 38 INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92 + + T D FS + L+A +I +++ K K+ +I+ + Sbjct: 60 ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146 + + + + + + I I+ EK + I C + Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167 Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + + S +A ++ G + + +L ++ IT Sbjct: 168 TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +++ +I+ I N ++ + + H + G + Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI--HLARKK 323 + N S +I+ + + E + W + + + ++ + + K Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYADINYKSSKN 334 Query: 324 KYLEKNIIFQTILYIAQT 341 L I + + Q Sbjct: 335 PRLTVEIALMQLASLTQE 352 >gi|328951099|ref|YP_004368434.1| DNA polymerase III, delta subunit [Marinithermus hydrothermalis DSM 14884] gi|328451423|gb|AEB12324.1| DNA polymerase III, delta subunit [Marinithermus hydrothermalis DSM 14884] Length = 301 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 86/274 (31%), Gaps = 13/274 (4%) Query: 58 LNALEIQKNISTFWNEINSTSLFS-KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116 L + + + + + LF ++ + + + L ++ + ++++ Sbjct: 25 LAPRLLPPDPARL-QQAAAGGLFGPSGALVDLREAA--EAEWKALRPVLEALPADALVLL 81 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 + K + + V + +E L Q L Sbjct: 82 L--DPKPPAARSRWYKARAEVRDHP--TPRWKDRVRWVENELKSRGIKAPSAVAQYLAG- 136 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 L GD A EL+KL ++ + V+ ++ L +++ A +G+ A+ Sbjct: 137 LEGDLEALAMELEKLELLSPP---LSVEKVRAVVALEAPLSAFDLVRAVTEGRFREALQH 193 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 LA +L ++ L K + + + EK + P Sbjct: 194 LRTLLARGEEPLRILGALSWQYTTLAKAWALLAENPLLGEKEAAGLL-GVHPYAARQALL 252 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 + ++ +R+ L + A++ + + Sbjct: 253 LAKRLDEARLRQALEALVVAERRAKEAGNPVRAL 286 >gi|149003384|ref|ZP_01828273.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS69] gi|147758567|gb|EDK65565.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS69] Length = 364 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ A + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSAIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|183219439|ref|YP_001837435.1| hypothetical protein LEPBI_I0012 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909585|ref|YP_001961140.1| DNA-directed DNA polymerase subunit delta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774261|gb|ABZ92562.1| DNA-directed DNA polymerase, delta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777861|gb|ABZ96159.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 369 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 103/293 (35%), Gaps = 34/293 (11%) Query: 28 GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87 G D ++ +++ + T D F ++++ + ++ + + E+ + +F +K+I+ Sbjct: 33 GEDSYEFELIVEHYREILQKTLGD-FEVILIVSESGEQ--AKLFAELFTPDMFYPRKLII 89 Query: 88 IENLSTE-------------KKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAE 132 I+N + K + I +I ++ K +L + + Sbjct: 90 IKNATALFKPILDPKAAHEWKDFASGFRKNITSVSDEIFTLIHYDGKDVPK--SLIDLFQ 147 Query: 133 -KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + YP++ + E Q A + + + A ++KL Sbjct: 148 GTLSYFKTKVLYPNDYPKIFK---EVCDQEQAHFEPNATEEFIHRTPANVGAYIKSVKKL 204 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 Y + T + V ++ + L ++ + +Q + + F + +L Sbjct: 205 KQYLHKSK-FTLEDVNSVLFSQNELNTNVLVESLVQKRKVDF---FKEFTKFGDQNSEIL 260 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI----IQKTEKNIIPM--KRNILQESL 298 + + L++I IK + ++ + + K ++N ++ L Sbjct: 261 NFLTRLTYKLDEIRKIKVIRSRHNGEVPIPIMDELLKTGSFSEARKNFVRRQL 313 >gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii] gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii] Length = 1241 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 58/175 (33%), Gaps = 22/175 (12%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ +++ I EA +++ + G + L +L ++T +++ Sbjct: 677 DIISRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLL---GQVVTLSTLQE 733 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + G + + L S + AL L + Sbjct: 734 LVGLLPDDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLAL-------MSQLATLITDM 786 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNIL--QESLRIWNKNLVRETLHKIDHRIHLAR 321 + + K ++ ++ + +L + +R+ L + R Sbjct: 787 ----------LAGSYKPVLTQRKRRFFHKITLSKEDLERLRQALKILSEAEKQVR 831 >gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 1097 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 65/194 (33%), Gaps = 21/194 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ + I K+A +++ + G + L++LS I+ V Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 663 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL L + Sbjct: 664 QELVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL-------MSQLATVIT 716 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 + F K K + ++ + +E + +R+ L + R Sbjct: 717 DILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTLSEAEKQLRVSNDK 768 Query: 326 LEKNIIFQTILYIA 339 L + +L +A Sbjct: 769 L--TWLTAALLQLA 780 >gi|258645987|ref|ZP_05733456.1| putative DNA polymerase III, delta subunit [Dialister invisus DSM 15470] gi|260403358|gb|EEW96905.1| putative DNA polymerase III, delta subunit [Dialister invisus DSM 15470] Length = 331 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 32/278 (11%) Query: 25 IFYGSDK---GLIFELINQFKKNISITYHDPF--SLVVLNALEIQKNISTFWNEINSTSL 79 I YG+D GL E I D F + + L+ N + + + SL Sbjct: 12 ILYGNDSVTIGLRREEI----------IRDYFHGEIPEVTVLDSPGNYDLYRSYLEGQSL 61 Query: 80 FSKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRK 129 F+ K +++EN E+ + I+ + + + I + K K Sbjct: 62 FAVKTAVVMENPFFIKRPPKDKKEENEFNGFINILKELTPDILAIFTVDGALDKRTKASK 121 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG----DRIASR 185 + + C ++ L+ K + EA+ + +G R + Sbjct: 122 TL--LSVCGSEECSLLAPREGASVMARMLMDCGKRVEPEARAYMEEVIGSWETISRPFLQ 179 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 E K+ I+++ ++ + + I + +A I + D Sbjct: 180 TECDKIVLMAGNRTGISKKLLEYALPEYMDQGIFKFTDALIAKNASAVMENTDHVFTDVS 239 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + L KF+ ++ + + ++ +I + Sbjct: 240 ETIKNLGFISAKFRKIKILK-EMQRNHAPLPQIQKAAG 276 >gi|157363408|ref|YP_001470175.1| DNA polymerase III delta [Thermotoga lettingae TMO] gi|157314012|gb|ABV33111.1| DNA polymerase III delta [Thermotoga lettingae TMO] Length = 313 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 28/259 (10%) Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 ++ LFSK +I + + KKV +E++ + ++ + + ++ +T R Sbjct: 39 RIPELVSQMGLFSKDFLIDVVDFDEWKKVDQ--KELLQQLSSSNFLAV----LRTFSTSR 92 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K ++ P K ++ I + + E + +G D + E Sbjct: 93 K---TDVIDFSLP-KPWEKEKWIEYISKRFEKSSLEYNYEGVEKFFDFVGADDLLIERET 148 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 +KL+ C+ + +T V +C+ + +EE A + ++ Sbjct: 149 EKLA--CIGEK-VTPDIVSLAVCNYSKIQMEEFCFAVST--LNRHAHYLLHDMSFYTEIV 203 Query: 249 ALLHGFLQKFQLLEKIHIIKECSN-------ISFEK-----IIQKTEK-NIIPMKRNILQ 295 AL++ + F L +I E + + + +++ + + Sbjct: 204 ALVNVLSKHFVDLYRILSAVEKRDSYSWMYIKNISQKLNIPVVKSAKFLGFSFKNQPSSI 263 Query: 296 ESLRIWNKNLVRETLHKID 314 ++I++ +R L ++ Sbjct: 264 NHVKIYSFEKLRIILRQLQ 282 >gi|306818031|ref|ZP_07451763.1| DNA-directed DNA polymerase III delta subunit [Mobiluncus mulieris ATCC 35239] gi|304649192|gb|EFM46485.1| DNA-directed DNA polymerase III delta subunit [Mobiluncus mulieris ATCC 35239] Length = 406 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220 + + A L+ LG + +L + V+ + + Sbjct: 225 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 284 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I +A + G + A+ L + ++ K + L ++ + ++ Sbjct: 285 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 343 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 + M R ++ L W+ + L + + + + IL + + Sbjct: 344 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 402 Query: 341 TACK 344 A K Sbjct: 403 CARK 406 >gi|253582811|ref|ZP_04860031.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251835387|gb|EES63928.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 330 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 14/160 (8%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119 QK F +++ S+F+ K+++++ K + + + + N+ III Sbjct: 35 FDASQKEDEVFLQTVSTNSIFNPKELLILRRAEDIKNIEAFFKTLKLFNLSQKEIIIIYE 94 Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171 E K N L +K + + I CY + K + ++ L I + K Sbjct: 95 EFLNDYGKIKNPLSKKAMDSIGEIAQIICYRKENEKKAVTFYLQNELNISEYEAEK---- 150 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + +G D +NE++K+ +Y L+ V ++ Sbjct: 151 -FVEIIGDDFFKIKNEVEKVKNY-LDGDTFNLTKVMPVLS 188 >gi|222823951|ref|YP_002575525.1| hypothetical protein Cla_0950 [Campylobacter lari RM2100] gi|222539173|gb|ACM64274.1| conserved hypothetical protein [Campylobacter lari RM2100] Length = 321 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 33/270 (12%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ YG+D I K S F + + ++ ++S SLFS++ Sbjct: 19 FLLYGADNFQIELYTKFIKDKYSFDESLRFYFEEYDFKQA-------YDYLSSASLFSER 71 Query: 84 KIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141 K++ I+ + +K L++++ +N ++ +++ + K +E Sbjct: 72 KLLEIK--TQKKIPSKELKQLLQLCQNSQDNYFLLEIYDESS-----KQSEAEKIFANNF 124 Query: 142 C--Y----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 C Y + L+ L + L +I++ A L N + + NEL K S Sbjct: 125 CRFYKVNSAKEGMELLALKAKEL---NINITQNALYALFYNFNENLYLAANELNKFS--- 178 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + I E+ +++ + E + +Q + + + AL++ Sbjct: 179 --GLNIDEKIIQEHCYSLSTISFESFFDKLMQKQ---DLRNELESILENYNEIALINALY 233 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 F L KI + + K I Sbjct: 234 ANFSRLFKIALHVKIYGNLDLKEILGYVPP 263 >gi|323142859|ref|ZP_08077571.1| putative DNA polymerase III, delta subunit [Succinatimonas hippei YIT 12066] gi|322417401|gb|EFY08023.1| putative DNA polymerase III, delta subunit [Succinatimonas hippei YIT 12066] Length = 367 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 83/250 (33%), Gaps = 31/250 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI---QKNISTFWNEINSTS 78 VFI D L + ++ + + D L+ + Q N++ NE+ Sbjct: 6 PVFILSSDDPLLKNDRSSEIYHSYKEKHPDSEYLLFTYSDFASSGQSNLAVLENELIDGG 65 Query: 79 LFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIII----------------KSN 119 LF+ K+I I +K D L + I K + III + Sbjct: 66 LFTSNKVIKIYLKDIDKTAADVLMLLAKYISKQRDDLQIIIDLPRIAASFNKVSAKPFAE 125 Query: 120 EIKK--NNTLR-----KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172 E KK LR + +VL I YP + + I I +A Sbjct: 126 ESKKNRKADLRVKDAISYLKNQNAVLEIM-YPPSLQEMPGWISSRARRLGLYIDPDAAVF 184 Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 L + G+ A LQ + + IT + + E+ +A + G+ Sbjct: 185 LSSAYEGNLTAIDQCLQ-IVKMTAKTEKITIKDIFTYFSKDSRFSGFELTDAILDGQGLR 243 Query: 233 AIMLADFFLA 242 A+ + + + Sbjct: 244 ALNILNSLCS 253 >gi|72162480|ref|YP_290137.1| recombination factor protein RarA [Thermobifida fusca YX] gi|71916212|gb|AAZ56114.1| Recombination protein MgsA [Thermobifida fusca YX] Length = 441 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Query: 145 DNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 D+ ++ L +E L G+ ++++EA L+ GGD S L+ + + IT Sbjct: 173 DDIRTVVRRALTDERGLAGRYTLTEEALHHLVRLAGGDARRSLTYLEAAALVAGDRTEIT 232 Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 V+ D H + I + + A+ + + + Sbjct: 233 VADVERAADRTAVRYDRSGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDPRFIAR 292 Query: 253 GFLQK 257 + Sbjct: 293 RLVVH 297 >gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis KC583] gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella bacilliformis KC583] Length = 634 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/202 (9%), Positives = 66/202 (32%), Gaps = 9/202 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ + + + + ++A I+ G + + + + I Sbjct: 187 ESSALVAHLHKIAQHEKVEVQEQALSIIARAAEGSVRDALSIFDQAI--AHSNGKINATA 244 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ + ++G I +A+ + ++L L+ ++ Sbjct: 245 VRTMLGLADQARIIDLFDYVMKGDIVSALHELRSQYDAGADPFSVLAELANFNHLVTRLR 304 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319 +I E + ++ ++ ++ ++ R W + + + + L Sbjct: 305 LIPETTEDLSLTEDERLR-SLDFSQKLSIRVLSRTWQMLLKGLQEINQAARPLQAAEMLL 363 Query: 320 ARKKKYLEKNIIFQTILYIAQT 341 R + + + + + Q Sbjct: 364 IRLTHATDLPTLDEALTQLTQN 385 >gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM 5456] gi|150415659|sp|A2BL93|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM 5456] Length = 484 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 79/202 (39%), Gaps = 28/202 (13%) Query: 21 HFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 +FYG L+ N++ + F + +I + Sbjct: 44 RKAALFYGPAGVGKTSLVEAAANEYGLELIEMNASDFRR--------KSDIERIAKIAAT 95 Query: 77 T-SLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 SLF +K+ I++ + + ++ LD + E+I NI H I++ +N+ + L+ Sbjct: 96 QFSLFGRKRKIILLDEVDGISGTADRGGLDAILELI--NITKHPIVMTAND-PWDQKLKP 152 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + L + Y ++ +++ +++ EA +++ GD ++ N+LQ Sbjct: 153 LRDAS---LMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQ 209 Query: 190 KLSSYCLEDILITEQHVKDIIC 211 + ++ V+ ++ Sbjct: 210 AI---AEGYGVVRVDLVRALLA 228 >gi|218295670|ref|ZP_03496466.1| DNA polymerase III, delta subunit [Thermus aquaticus Y51MC23] gi|218243829|gb|EED10356.1| DNA polymerase III, delta subunit [Thermus aquaticus Y51MC23] Length = 299 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 94/275 (34%), Gaps = 21/275 (7%) Query: 73 EINSTSLFSKKKIIL-IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKI 130 E + LF +L + +S + L+ I+ +++ + + R Sbjct: 38 EALAPGLFGGGGAMLDLREVSEGEW--KALKPILEGVPEGVPVLL----LDPRPSPSRAA 91 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + L+ +E + Q L A L D A EL+K Sbjct: 92 FYRSRERRDFP--TPKGKDLVRHLENRARRLGLRLPSGVAQYLAA-LEADLEALERELEK 148 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L+ L +T + V+ ++ + +++ A ++ A+ L Sbjct: 149 LA---LLPPPLTLEKVEMVVALKPPITGFDLVRAVLEKNPKEALARLKRLKEEGEEPLKL 205 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 L F +F LL + + + + + E + + + + L+E+ R ++ +R+ L Sbjct: 206 LGAFAWQFGLLSRAYFLLQENPRPKEADLARLGAH-PYAAKKALEEA-RRLSEEALRQAL 263 Query: 311 HKIDHRIHLAR--KKKYLEKNIIFQTILYIAQTAC 343 + A+ K +L + +L +A Sbjct: 264 TTLIEAERRAKGGKDPWLA---LEMAVLSLAVDQR 295 >gi|86739966|ref|YP_480366.1| DNA polymerase III subunit delta [Frankia sp. CcI3] gi|86566828|gb|ABD10637.1| DNA polymerase III, delta subunit [Frankia sp. CcI3] Length = 334 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 87/244 (35%), Gaps = 7/244 (2%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + + G + L+ + + + +V A E+ + + + + +TS+F Sbjct: 12 PLVLVTGDEDLLVG-RAVRGVLDAARARDPDVEIVDRPAGELSE--ADLID-LGATSMFG 67 Query: 82 KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 +++++ + + D L E I + + + ++++ + + KN L + + + + Sbjct: 68 GGRVMVVRGAQDLAEDLRDALLEYIARPLDDVVLVVVHSGVVKNRKLADVLKTAGARVVP 127 Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 + D + + +S A + LL +GGD +L D L Sbjct: 128 AAKITKPRERHDFVVAEVRHLGGRVSDGAVRALLDAVGGDLRELAAVCDQLV--ADTDGL 185 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I E V + +A I G + A+ L L + + + Sbjct: 186 IDEAAVARFHRGRAEASGFAVADAIIGGDLPQALTLLRQSLEGGTAAVLVSSAVAGGLRD 245 Query: 261 LEKI 264 L ++ Sbjct: 246 LARV 249 >gi|291279191|ref|YP_003496026.1| hypothetical protein DEFDS_0792 [Deferribacter desulfuricans SSM1] gi|290753893|dbj|BAI80270.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 292 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 104/297 (35%), Gaps = 33/297 (11%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78 + + GSD I + +++ D ++ + E NI + I++ S Sbjct: 2 TTKKKILIAGSDSF-ISDRLDEL-------IPDDENIEIKRYNEENFNIEEVVDFISTIS 53 Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 LF + K ++++N+ K++ D L + I+ S N L K+ + ++ Sbjct: 54 LFYEDKYLIVKNIHKIKELEDSLNYFSGE--SEAHIVFTSEN----NNLIKLFKDHFEII 107 Query: 139 --AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 Y D + + E I + + G + + E +K+S + Sbjct: 108 KETKHSYKD----FVVQVMEIFKSKGVDIEFNEAKEIYELCGRNIDLIKQEAEKISIFFY 163 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + + + +I ++V + + +++ + + +++ + + + Sbjct: 164 NQKIESFDEILKLISSSNVNLVFKFLDSFYVRDKRKTLEYLNEMISAHENLMMVFYMLAK 223 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 + + I E + KI Q ++ ++ W + + + + + Sbjct: 224 RANEMFYYKINPELVSGHAYKISQ-------------IKSAVSKWKLDELSQLIENL 267 >gi|313631594|gb|EFR98854.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL N1-067] Length = 456 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +E L + ++A I+ G + + L ++ SY +T + Sbjct: 57 TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 114 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 115 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 168 >gi|168492914|ref|ZP_02717057.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC3059-06] gi|221231559|ref|YP_002510711.1| DNA polymerase III delta subunit [Streptococcus pneumoniae ATCC 700669] gi|225858573|ref|YP_002740083.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 70585] gi|183576916|gb|EDT97444.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC3059-06] gi|220674019|emb|CAR68532.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae ATCC 700669] gi|225722068|gb|ACO17922.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae 70585] Length = 345 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ A + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|149921244|ref|ZP_01909700.1| DNA polymerase III, delta subunit [Plesiocystis pacifica SIR-1] gi|149817904|gb|EDM77366.1| DNA polymerase III, delta subunit [Plesiocystis pacifica SIR-1] Length = 363 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 31/280 (11%) Query: 22 FVFIFYGSDKGLIFE-----LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 V++ +G D + + T + F+ +A + N Sbjct: 15 PVYLLWGEDSAAVKAVVDAVREAVLRPGGVSTGMEAFNHERFDAPYVLAAAEVL-NACGQ 73 Query: 77 TSLFSKKKIILIENL--------------------STEKKVLDCLEEIIIKNICNHIIII 116 + + ++++ + N S + L E ++II Sbjct: 74 VPMMADRRLVELSNPEDFGKHKRAEELDGEVKALESKRDDAIGALIEYFDDPNPTTVLII 133 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 S I + L K A+K V+ P ++ D + + Q +++ Q L+A Sbjct: 134 TSAGINGTSKLVKAAKKAKGVVERKLAPASEQEAADELLDEAQRRQLPLTRGGAQALVAA 193 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 +G L++ ++ + +HV+ ++ T + ++ +A +G A+ + Sbjct: 194 VGTSLADLVPALERAVAFAEGAS-VEREHVEAVVATTREANVFDLTDAVGRGDHVRALEI 252 Query: 237 ADFFL--ASKMPSHA--LLHGFLQKFQLLEKIHIIKECSN 272 A K P A LL + + L + ++ + Sbjct: 253 LAHMFRTAEKDPGQAMRLLGMLTWQMRRLCTVAFARDPAR 292 >gi|116753783|ref|YP_842901.1| replication factor C large subunit [Methanosaeta thermophila PT] gi|121693813|sp|A0B6D7|RFCL_METTP RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|116665234|gb|ABK14261.1| replication factor C large subunit [Methanosaeta thermophila PT] Length = 467 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 28/230 (12%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTSLFS 81 I YG G + + + + + LNA + + I + + S FS Sbjct: 43 LILYGP-PG-VGKTSAALALASEMDWD----YIELNASDQRTAEIIKSIAGPASQVSTFS 96 Query: 82 KKK-IILIENLST-----EKKVLDCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKF 134 ++ +++++ ++ + +I I+I + I+K LR Sbjct: 97 GRRRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIEK--PLR------ 148 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + + + L+ E EA + A GGD R+ + L + Sbjct: 149 DACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGD---LRSAINDLEAA 205 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLADFFLAS 243 + + V D I ++++ +G +A+ S Sbjct: 206 ARGLKHLRLEDVATSERDVKA-SIFRVLDSIFKGEDSRSALEATYQLDES 254 >gi|257126560|ref|YP_003164674.1| DNA polymerase III delta [Leptotrichia buccalis C-1013-b] gi|257050499|gb|ACV39683.1| DNA polymerase III delta [Leptotrichia buccalis C-1013-b] Length = 327 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 79/184 (42%), Gaps = 12/184 (6%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--K 117 +++++N F +IN S+F+ +++++++ K + + L+ I I N III Sbjct: 35 DVDLKEN-EKFLEKININSMFANQELVVLKRAEKLKNIEEILKYIANLEIVNKEIIIDYD 93 Query: 118 SNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + K L+K+ + K + +++ + + L +I+ +LL Sbjct: 94 KEDGKFGVKLKKLLDEFSKNKQMKVFLFQKESEKEIKAYVVNEL-----NINARDVSVLL 148 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 +G + RNE++K+ + L+ + +K+I+ I E+ + + + Sbjct: 149 EMIGRNPFKVRNEVEKIKVF-LDGEKFDIEKIKNIVSIEKEYQIYEMTRNILLNNPADVM 207 Query: 235 MLAD 238 + Sbjct: 208 RYLE 211 >gi|221632853|ref|YP_002522075.1| DNA polymerase III subunit delta superfamily [Thermomicrobium roseum DSM 5159] gi|221156946|gb|ACM06073.1| DNA polymerase III, delta subunit superfamily [Thermomicrobium roseum DSM 5159] Length = 344 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 89/305 (29%), Gaps = 35/305 (11%) Query: 67 ISTFWNEINSTSLFSKKKIIL----IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 I T + F +++++ + + ++++ L + +I + Sbjct: 40 IPTIMAAARTPGFFLDQRLVITECLLADHIRQQQLDPDLVHALATLPSGCHVISLEPPLP 99 Query: 123 KNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL------- 174 L ++ + + C L++ + E I A + L+ Sbjct: 100 P-AVLDQLRAALGDAVTFVDCNVPIGEKLIEWVTERARSYGVEIEPAAAEELVIAIDPTA 158 Query: 175 -------------ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 G D EL KL++ + +I V++++ + Sbjct: 159 LQRRREHAGSQSDQQAGLDLARVDQELAKLATAVYPEKMIRVAVVRELVAADDAPLEWAL 218 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281 I+A +G + + L + LL F+ L I+ S + Sbjct: 219 IDALNRGDATAIVRELERALDTNAVPDVLLAQLASHFEALFAAQILPHLSPDAVAAATGL 278 Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 + + I ++R + N + L ID + I + L + Sbjct: 279 SARRIAQVRRILSTR--SSMNAGAMLAALRAIDASLKR-------GIVIDSEAALAVTLL 329 Query: 342 ACKNN 346 A Sbjct: 330 AGAQR 334 >gi|169832751|ref|YP_001694225.1| DNA polymerase III subunit delta [Streptococcus pneumoniae Hungary19A-6] gi|168995253|gb|ACA35865.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae Hungary19A-6] Length = 345 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ A + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|15900659|ref|NP_345263.1| DNA polymerase III subunit delta [Streptococcus pneumoniae TIGR4] gi|111658345|ref|ZP_01409033.1| hypothetical protein SpneT_02000485 [Streptococcus pneumoniae TIGR4] gi|14972240|gb|AAK74903.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae TIGR4] Length = 345 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ A + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + + +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|320159544|ref|YP_004172768.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila UNI-1] Length = 553 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 19/193 (9%), Positives = 64/193 (33%), Gaps = 14/193 (7%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + L + + + + I I+ + E+ K T+ ++ + L+ Sbjct: 134 AAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQRHEFRRV------PVQQIAALL 187 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + ++ ++A ++ G + + L +LSS +T + V+ ++ Sbjct: 188 RQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSS---TGERVTLEMVQSVLGTAA 244 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI----IKEC 270 I +++A + + + L + + L + + + + Sbjct: 245 GEPIRLLVDAILARNAAQGLQIIQQTLDGGADPRQFARQVVDYLRGLLLVRMNNAALVDA 304 Query: 271 SNISFEKIIQKTE 283 + + ++ + Sbjct: 305 TAETRAQMAAQAG 317 >gi|223039643|ref|ZP_03609929.1| DNA polymerase III, delta subunit superfamily [Campylobacter rectus RM3267] gi|222879026|gb|EEF14121.1| DNA polymerase III, delta subunit superfamily [Campylobacter rectus RM3267] Length = 328 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 39/337 (11%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 F+ YG+D I F K I + D F ++ E + + + SLF Sbjct: 19 FLLYGAD----EYQIELFTKEILAKFKD-FEILSFYYDEYDFDAARAH--LCEPSLFGDS 71 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL----- 138 ++ ++ S +K L+ +I + + + E + Sbjct: 72 PLLHVK--SDKKIPAKELKILIEGCKNGGAFVFE------------LFESDAKAVFDTQK 117 Query: 139 AISCY------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 A P + ++L+ +I++ A L + + +EL KL+ Sbjct: 118 AFGVNFARFFKPGSPEEAVNLLGRQAAKMSLNITRNALFELYRIHNENLYLAASELNKLA 177 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 S + I E V+ ++ + ++ + I K A ++ Sbjct: 178 SL---NEPINENIVRSLVFSLSSVSFDDFFDKFIALKDIRAD-FFSCADDGNFNEILFIN 233 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 + F L K+H + + K P N L+ N +E Sbjct: 234 SLYRAFFRLFKLHAGIKITGKFDIKETLGYTPP--PNVANELKRQCLAVNLKAYKEIFTA 291 Query: 313 IDHRIHLARKKKYLE-KNIIFQTILYIAQTACKNNNF 348 ++ + L+ K + +L + KN+ + Sbjct: 292 LNLAEFELKTNSALDKKTFLLSCVLGLQNLIGKNSKY 328 >gi|223587782|emb|CAX37001.1| DNA polymerase III, delta subunit protein [Citrobacter sp. JEK-2009] Length = 195 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 66 NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 + ++ + SLF+ ++ ++ + + + L ++ + ++I++ N++ K Sbjct: 55 DWGEIFSLCQAMSLFASRQSLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTK 114 Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + + +SC + L + + + A Q+L G+ + Sbjct: 115 AQENAAWYTGLANNAVQVSCQTPEQAQLPRWVAARAKLNDLQLDDAANQLLCYCYEGNLL 174 Query: 183 ASRNELQKLSS 193 A L++L+ Sbjct: 175 ALAQALERLAL 185 >gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13] Length = 601 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 105 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 164 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 165 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 212 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 213 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 270 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 271 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 313 >gi|290559903|gb|EFD93225.1| hypothetical protein BJBARM5_0018 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 325 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 32/238 (13%) Query: 39 NQFKKNISITYHDPFSLVVLNA--LEIQKNISTFWNE----INSTSLF-SKKKIILIENL 91 N + ++ + + F ++ L + Q S N S SLF S +KII IE++ Sbjct: 46 NFLAEALANSINASFEVINLYEFSDDSQSVSSAILNNIKSSAVSKSLFQSNRKIIYIEDI 105 Query: 92 STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149 V + I + III +S EI K + +K + + Y N Sbjct: 106 EKILSVNPSIIPSITSLAVDSIIIFESESGEIFK-SKYKKYI---SGCEVVRFYKLNNR- 160 Query: 150 LMDLIEESLLI-GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ L L I + I I++ G+ + ++ LS + + + Sbjct: 161 VVRLFATKLAIYNRLQIDDRTLDIIVNGSKGNLASVITDMNTLSI-TGSKQIDSFRD--- 216 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--------PSHALLHGFLQKF 258 I + INA GK+ N + + +K L L F Sbjct: 217 -----SSDSIFDKINAVFSGKVENVDIYFSSDMEAKNFEIWLADKAPQVLKKEALYHF 269 >gi|194398594|ref|YP_002037411.1| DNA polymerase III subunit delta [Streptococcus pneumoniae G54] gi|194358261|gb|ACF56709.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae G54] Length = 345 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + ++I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNVIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL F2-515] Length = 289 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 170 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 227 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 228 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 281 >gi|190571334|ref|YP_001975692.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018730|ref|ZP_03334538.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357606|emb|CAQ55047.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995681|gb|EEB56321.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 527 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 20/203 (9%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL-- 153 + L + + + + I+ + EIKK + C + ++ Sbjct: 131 NAFNALLKTLEEPPSSVKFILATTEIKK----------IPITVIARCQRFDLHNIPSAKI 180 Query: 154 ---IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 + + I KEA +++ + + + + Y +D I+ Q V DI+ Sbjct: 181 MERLNDIAQKENYFIEKEASELIAHHCSNSMRNALFLMNQALLYS-KDGTISTQSVTDIL 239 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 I +++ A + + A+++ D + + LQ QL+ + I KE Sbjct: 240 GLVDRNVIFDLLEAVLDSDLQKALLVFDNVVK-TANPLNIFEDLLQTIQLICRFLITKEI 298 Query: 271 SN---ISFEKIIQKTEKNIIPMK 290 S K + + I + Sbjct: 299 DTEYEKSRVKDLSAKKSLIFFSR 321 >gi|57242338|ref|ZP_00370277.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57017018|gb|EAL53800.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 320 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 108/324 (33%), Gaps = 30/324 (9%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69 +QK+ +N +F F+ YG D N K+ + + + + Sbjct: 6 LQKALENKNFPNF-FLLYGGDNFQTELYGNFIKQKYGVEENLKLYFEEYDF-------AR 57 Query: 70 FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 + + SLFS KK++ I+ L K L L + N N ++ +E K + L Sbjct: 58 ASDFLALGSLFSSKKLLEIKCLKKPSGKDLKALISLCKNNADNFFLLELYDENTKQSELE 117 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 KI E + I L+ + + L I+ A L + + + +EL Sbjct: 118 KIFENHFARFFKISNSKEGIELLAMKAKEL---NVEITHNALITLFVSFDENLYLAASEL 174 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 K + ++ + E +K ++ ++ + + K N + L Sbjct: 175 NKFA-----NLKVDENIIKQYCYSLALVGFDDFFDKLL--KTRNIKEELEKILE-NFNEI 226 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR----IWNKN 304 AL++ F L KI I + K + + ++L N Sbjct: 227 ALINSLSSAFYRLFKITIYAKIYGKIDFKDLLGYTPP------PQVGQALSGQAFKLNLK 280 Query: 305 LVRETLHKIDHRIHLARKKKYLEK 328 + + + + + L K Sbjct: 281 QYKAIFNLLLKSEYEIKTNSKLSK 304 >gi|269120540|ref|YP_003308717.1| DNA polymerase III subunit delta [Sebaldella termitidis ATCC 33386] gi|268614418|gb|ACZ08786.1| DNA polymerase III delta [Sebaldella termitidis ATCC 33386] Length = 321 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 16/192 (8%) Query: 55 LVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHII 114 + K F+ ++N S+F K+I++++ + + L + + + + Sbjct: 29 IQEFAFDVALKEDDKFFEKLNFNSIFGGKEILVLKRAEKLGNIEEVLTLVSNVEMDSKYV 88 Query: 115 II----KSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 II + + KKN+ L + + K T I +++ +L + ++E+L K Sbjct: 89 IIDFHTEGS--KKNDKLFTLLDEIGKKTETKVIKT-EEDEKNLSNYVKENLKTDTKE--- 142 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 Q LL+ +G + +NE++K+ S+ L D + +K +I +I E + TI+ Sbjct: 143 --TQRLLSLIGENPFKVKNEVEKIKSF-LGDEPYDFEKIKSMISVQKEYFIYECVEKTIK 199 Query: 228 GKIYNAIMLADF 239 G+I+ + Sbjct: 200 GEIFEVMEYLKK 211 >gi|320533796|ref|ZP_08034391.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133987|gb|EFW26340.1| conserved domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 189 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 10/179 (5%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111 + L A + + + S SLF + +++ + L T+ + D + + + Sbjct: 16 EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVSAADPEV 72 Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170 +I+ + + L I K + I C + L+ + +SI+ EA Sbjct: 73 SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAIKSAKDKSSLVVADVRRAGRSIAPEAV 130 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 L+ LG D + + +L I+ HV+ + A G Sbjct: 131 GALVDALGSDLRELCSAVDQLL--ADTQGTISVDHVRTYYAGRIEATGFTVAGAAAAGN 187 >gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis ATCC 8503] Length = 586 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 90 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298 >gi|170742371|ref|YP_001771026.1| DNA polymerase III subunits gamma and tau [Methylobacterium sp. 4-46] gi|168196645|gb|ACA18592.1| DNA polymerase III, subunits gamma and tau [Methylobacterium sp. 4-46] Length = 605 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 4/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ + ++ EA + G S + L + +T + Sbjct: 211 EAGTLVAHLHRICDAEGVAVEPEALAAIARAAEGSVRDSLSLLDQAI--AHGAGRVTAET 268 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G A + +L L+ ++ Sbjct: 269 VRDMLGLADRARIIDLFEAAMRGDAPAAFAELHGQYEAGADPAVVLQDLAGFTHLVTRLK 328 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + E + + + R ++ R W ++ + ++ Sbjct: 329 VAPETARADTALSEAERGRGSDFADRLSVRALSRAW--QILLRAIPEVQAA 377 >gi|71065142|ref|YP_263869.1| DNA polymerase III, delta subunit [Psychrobacter arcticus 273-4] gi|71038127|gb|AAZ18435.1| DNA polymerase III, delta subunit [Psychrobacter arcticus 273-4] Length = 358 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 114/344 (33%), Gaps = 47/344 (13%) Query: 7 HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 FIQ K S V ++ +G + L LI+ + + +++ + + I Sbjct: 3 DTFIQAYPKLRQSSIAVAGLWLAHGDEPLLSQWLIDALRPHWRAQN---YAIKRIELISI 59 Query: 64 QKNISTFWNEINSTSLFSK-KKIILIENLSTEKKVLDCLEEIIIKNICNHI---IIIKSN 119 + E+ S SLF +I+ N +K V+ LE ++ + Sbjct: 60 KSWQEVLS-ELGSQSLFDDASALIVTGNHKPDKAVITELERFAQDAQTGAHSHSLLWLTP 118 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + K K I C N+ L++ +S+EA Q+L+++ Sbjct: 119 KQDKRAQSSKWFAPFAQYGHLIDCNLYNEQQRQQLLQIQAQQFGLKLSQEAWQLLMSHTE 178 Query: 179 GDRIASRNELQKLS------SYCLEDILI---------------TEQHVKDIICDTHVLY 217 +++ L +LS D I ++ + Sbjct: 179 HHLLSAYQTLWRLSYLFAPQLMANNDAAIQENGNSSAHLLQVALDINDLQAALVSDAQFS 238 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 + ++ +A + G I + A+ P+ +L + + + ++ + + Sbjct: 239 VFDLSDAMLAGNIAQVAKIIFQLKATDEPTTLVLWAISKDMRQVMQL---MDGQDPQAL- 294 Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIH 318 I K+ + Q++ R +K V L++ D I Sbjct: 295 -------GIWRSKQGLYQQACRRQSKAQVAAWPALLYRCDQAIK 331 >gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B] Length = 586 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 90 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 256 DAVLSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298 >gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7] Length = 586 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 90 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298 >gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 575 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 108/324 (33%), Gaps = 37/324 (11%) Query: 36 ELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS- 92 E NQ + +S + ++ ++A +I ++ + ++ +I+ + Sbjct: 73 EACNQCESCVSFNENRSLNIFEMDAASNNSVDDIRELVKQVMVPPQIGRYRVYIIDEVHM 132 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKI 148 + + + + I I+ EK + I Y N+I Sbjct: 133 LSTAAFNAFLKTLEEPPEYAIFIL------------ATTEKHKILPTIISRCQVYDFNRI 180 Query: 149 HLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + D ++ + + EA +++ G + + ++ SYC IT + Sbjct: 181 QINDTVDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYCGNK--ITYKE 238 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V DI+ Y ++++ ++G + ++M+ D + + + G F+ L Sbjct: 239 VIDILNVLDYEYYLQMVDCFVRGDVVGSLMILDKIINKGFDVQSFVSGLSSHFRDLLVAQ 298 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH--LARKK 323 + S + I + E +I + + + L K Sbjct: 299 NERSISLLQVSDSI-----------KKRYAEQAKICPPDFLYKALELSVQCELNYKTSKN 347 Query: 324 KYLEKNIIFQTILYIAQTACKNNN 347 K L ++ I I T K NN Sbjct: 348 KRLLVELMLIKICQIISTPEKKNN 371 >gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 220] Length = 579 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J1-175] gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes FSL N1-017] Length = 579 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e] gi|224499379|ref|ZP_03667728.1| hypothetical protein LmonF1_06652 [Listeria monocytogenes Finland 1988] gi|224502886|ref|ZP_03671193.1| hypothetical protein LmonFR_10254 [Listeria monocytogenes FSL R2-561] gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165] gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28] gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e] gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165] gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578] gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923] Length = 579 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262] gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262] Length = 579 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL J2-003] Length = 446 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3] Length = 586 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 90 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298 >gi|254830860|ref|ZP_05235515.1| hypothetical protein Lmon1_05849 [Listeria monocytogenes 10403S] Length = 579 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23] gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes L99] Length = 580 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|78187181|ref|YP_375224.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] gi|78167083|gb|ABB24181.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] Length = 396 Score = 46.5 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 69/190 (36%), Gaps = 10/190 (5%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + + + + + I I + E+ K T+ ++F P+ + L + Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRI--PLPEIQQQLQGIC 199 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVKDIIC 211 E + +A Q++ G +++ L ++ ++ D I+ Q+V +++ Sbjct: 200 ESE----GIKVEPDALQLVCRKAQGSMRDAQSILDQVIAFSAQSGGDGAISYQNVAELLN 255 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 + + +A G I +A F + + L ++ + L + ++ Sbjct: 256 YIDDEQLFAVTDAIAAGDAPAMIEVAQFVIQNGYDEQDFLEKLIEHLRNLLMVQNLRSSR 315 Query: 272 NISFEKIIQK 281 + +++ Sbjct: 316 LVERPDAVRE 325 >gi|332313135|gb|EGJ26230.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str. Scott A] Length = 556 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 156 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 213 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 214 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 267 >gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071] gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071] Length = 580 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|116874071|ref|YP_850852.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri serovar 6b str. SLCC5334] Length = 579 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|256372082|ref|YP_003109906.1| DNA polymerase III delta subunit-like protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008666|gb|ACU54233.1| DNA polymerase III delta subunit-like protein [Acidimicrobium ferrooxidans DSM 10331] Length = 335 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 32/287 (11%), Positives = 87/287 (30%), Gaps = 12/287 (4%) Query: 70 FWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 + +F+ ++ I++ L ++ + ++ N ++ + E K+ Sbjct: 44 LATSFSQLPMFADRRRIVVTGLGALAAREAGELVKAASEAPGPNEVVFVVVGEPAKSVV- 102 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + IE++ S L LG + + + Sbjct: 103 -AHVDNHVEDRRRL----RSDRRRAAIEDAFREVGLSAEPAVVDQLAWALGEEVSRAGSI 157 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + L E + E+ + + + E+ +A G + A+ + D LA++MP+ Sbjct: 158 ARSLVGVVGEGGRVDEEALGAVALEVGARPPWELTDAIEAGDLPRALEVLDAMLAAQMPT 217 Query: 248 HALLHGFLQKFQLLEKIH--IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 LL ++ L + ++ + ++ R + + + I Sbjct: 218 VLLLTLIERRVLELFAVAGTGARDGAGVNAALREAGLRPRPDFAARALGELAAAI-GPER 276 Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 + + R + ++ A + +R+ Sbjct: 277 AGRLVRLVATAARDLRGDSVAPDETTLRLLVARA-ASLVPRRAQRRS 322 >gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|254899839|ref|ZP_05259763.1| hypothetical protein LmonJ_08496 [Listeria monocytogenes J0161] gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900] gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 1/2a F6854] gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900] gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 579 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes FSL J2-064] Length = 551 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 151 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 208 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 209 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 262 >gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] Length = 368 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 38/332 (11%), Positives = 97/332 (29%), Gaps = 46/332 (13%) Query: 38 INQFKKNISITY----HDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIE 89 + I+ D F+ + L+A +I +++ K K+ +I+ Sbjct: 56 ARILARKINEKDGSVSEDGFAYNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIID 115 Query: 90 NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN 146 + + + + + + I I+ EK + I C + Sbjct: 116 EVHMLSSAAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYD 163 Query: 147 -----KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 + + + +A ++ G + + +LS++ I Sbjct: 164 FKRIVIEDIQNHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIFDRLSTFS--QRNI 221 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T +++ I++ + KI + + + H + G F Sbjct: 222 TLAKAAEVLNILDYDQYLNIVDLVKENKIPEVLSAFNEIVKKGFDPHIFIAGLGNHF--- 278 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + N S ++I+ + + E + W + + + +H + Sbjct: 279 ---RDLMMAQNASTMELIE-----VGEKTKAKFVEQGQKWTAQQLIDGIEICNHADINYK 330 Query: 322 --KKKYLEKNIIFQTILYIAQTACKNNNFYKR 351 K L I ++ +A + K+ Sbjct: 331 NSKNPRLTVEI---ALMQLASLTANLGDTKKK 359 >gi|317011447|gb|ADU85194.1| DNA polymerase III subunit delta [Helicobacter pylori SouthAfrica7] Length = 340 Score = 46.5 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 23/279 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I + + A + +K S + + SLF Sbjct: 16 KAVFLYGEFDFFIHYYAQAIGSLIKLN-NPNAETSFFYASDYEK--SLIMSLLEQNSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129 + +++++ + + KK + L ++ ++ +II K + T + K Sbjct: 73 ESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYSSEAIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K L + + ++E IS L D + N Sbjct: 133 FFQKSPLKDEALCTRFFTPKTWESLKFLQERANFLHLDISSHLLNALFEINNEDLGVAFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + I + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKR 247 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 +L G + F L + + K + Sbjct: 248 DADILRGLERYFYQLFLFFARIKTTGSMDAKEVLGYAPP 286 >gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 426 Score = 46.1 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 18/183 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII 210 + L +I +A Q GD A+ N L+ D IT Q +D + Sbjct: 168 DRGLADYNVNIDDDALQYFSTQSQGDVRAALNALELAVLSTNPDENGEVHITLQDAEDCL 227 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + A+ + + + + Sbjct: 228 QKGSFMSDKDGDMHYDVMSAFQKSIRGSDTDAALHYLARLIEAGDLPTIARRLLVISY-- 285 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R L ++ + + + ID + Sbjct: 286 -EDIGLASPGAGQRTLAAIEAAERLGFPEARIPLSQAVIELCLSPKSNSGITAIDAALSD 344 Query: 320 ARK 322 RK Sbjct: 345 IRK 347 >gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120] Length = 579 Score = 46.1 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T + Sbjct: 179 TTQDIIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|297571411|ref|YP_003697185.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595] gi|296931758|gb|ADH92566.1| AAA ATPase central domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 442 Score = 46.1 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 17/122 (13%) Query: 149 HLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 + LI+ +L ++ +A+ ++ G D + L+ +S + I+ Sbjct: 176 DIATLIDRALSDERGFGGNVTLESDARDQIIMLAGSDARRALTILE--ASASAGNRHISI 233 Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 + V+ + D H + I + + A+ + + + Sbjct: 234 EDVERAVDVHTVRYDRNGDQHYDVVSAFIKSIRGSDVDAAMHYLARMVEAGEDPRFIARR 293 Query: 254 FL 255 + Sbjct: 294 LM 295 >gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum magnetotacticum MS-1] Length = 597 Score = 46.1 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 2/128 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L E I A +++ G + L + +TE Sbjct: 191 EMEVLSRHFEAIAAKEGAEIEPAALKLIARAADGSVRDGLSLLDQAI--SHGAGAVTETQ 248 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ + ++++A ++G + A+ A+ +L L+ L ++ Sbjct: 249 VRDMLGLADRARVFDLLDAVMKGDVPTALDQITDQYAAGADPAVVLQDMLELVHWLTRLK 308 Query: 266 IIKECSNI 273 + + ++ Sbjct: 309 VTPDAADQ 316 >gi|149194266|ref|ZP_01871363.1| hypothetical protein CMTB2_06691 [Caminibacter mediatlanticus TB-2] gi|149135441|gb|EDM23920.1| hypothetical protein CMTB2_06691 [Caminibacter mediatlanticus TB-2] Length = 305 Score = 46.1 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 +IEE + SISKEA L ++ + I R E++KLS Y I+ VK ++ Sbjct: 124 IIEEIAKEYKVSISKEAIDFLTKSV--EPIFFRKEIEKLSLYT---NNISLDDVKKLVFI 178 Query: 213 THVLYIEEIINATIQGK 229 EE+ ++G+ Sbjct: 179 YKEESFEELFVQILRGE 195 >gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC 17745] Length = 902 Score = 46.1 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 77/213 (36%), Gaps = 17/213 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 ++ LEI + +E+ + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + S+ Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFSLDSA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + LA + ++ +Q + L Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292 >gi|297791151|ref|XP_002863460.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297309295|gb|EFH39719.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 970 Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 70/193 (36%), Gaps = 19/193 (9%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 +++ ++ + I K+A +++ + G + L++LS ++ V Sbjct: 519 DADIINSLQLIASKEEIDIEKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRVSVPLV 575 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL+ + + Sbjct: 576 QEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATV 626 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 I + S++ + ++ ++ + +E + +++ L + R Sbjct: 627 ITDILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSSD- 679 Query: 327 EKNIIFQTILYIA 339 + + +L +A Sbjct: 680 KLTWLTAALLQLA 692 >gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19] Length = 586 Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 +++ L+A +I T +++ K K+ +I+ + + + + + Sbjct: 90 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + + I+ EK + I Y ++I + D++E Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA ++ G + + ++ S+ + IT Q V D + Y + Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +A + G + ++++ + L ++ G F+ L Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298 >gi|228969940|ref|ZP_04130660.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228789762|gb|EEM37624.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 157 Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN 119 ++K++LI++ L+++K+ L+ LEE I + I++ + Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAP 117 >gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] Length = 642 Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 26/206 (12%) Query: 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINS 76 + +G + +++ + ++ LNA + I S Sbjct: 41 PDRRAVVLHGPAGVGKTSTAHALARDL------DWEVIELNASDQRTAGVIERVAGSAAS 94 Query: 77 TS-LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK 129 + F K++I+++ ++ + + II + I++ +N+I T+R Sbjct: 95 MNTFFGGKRLIILDEADNIHGTADRGGMRAIAGIIKNTLQ--PIVLIANDIYGLTPTIRN 152 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + + ++ +++ S +A Q + GGD R+ + Sbjct: 153 LCLEIKFGSV------QSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGD---LRSAIN 203 Query: 190 KLSSYCLEDILITEQHVKDIICDTHV 215 L + + + + D Sbjct: 204 DLQAAATGRKTLEVEDLSTSGRDVKE 229 >gi|46908883|ref|YP_015272.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes serotype 4b str. F2365] gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes Clip81459] gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes serotype 4b str. F2365] gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 579 Score = 46.1 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY +T Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti MAFF303099] gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099] Length = 604 Score = 45.7 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 50/156 (32%), Gaps = 3/156 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + L+ + S+ +A ++ G S + L + ++ + Sbjct: 199 DAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGAVSAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + A+L + L+ ++ Sbjct: 257 VRAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEFNHLVTRLR 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + + ++ + ++ R W Sbjct: 317 FVPTAMD-DASLSQDERQRGADFARALSVRVLSRTW 351 >gi|58584691|ref|YP_198264.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419007|gb|AAW71022.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 494 Score = 45.7 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 25/207 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-C-----YPDNKIH 149 + L + + + + I+ + EIKK + I+ C Y Sbjct: 131 SAFNALLKTLEEPPPSVKFILATTEIKK-----------IPITIIARCQRFDLYNIPVAK 179 Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 +++ + + I KEA +++ + G + + + Y + +I+ + V DI Sbjct: 180 IVERLNDIAQRESYFIEKEASELIARHSGNSMRNALFLMNQAVLY-NKGGVISTKSVMDI 238 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + I +++ A + + A+ L D + ++ G LQ QL+ + + KE Sbjct: 239 LGLVDKDIIFDLMEAILGSDLQKALSLFDKAVE-TANPLSIFEGLLQTIQLICRFLVTKE 297 Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290 + + K + + I + Sbjct: 298 IDSSVTECEKNRIKDLGVKKSLIFFSR 324 >gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa] Length = 1190 Score = 45.7 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 58/194 (29%), Gaps = 21/194 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G + L++LS L I+ V Sbjct: 628 DADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQK-ISVPLV 684 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ I N + + + + AL+ + Sbjct: 685 QELVGLISDEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 744 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 + + L + +R+ L + R Sbjct: 745 DFTKERPRRK----------FFRRNP-----LSKDDMEKLRQALKTLSEAEKQLRMSNDK 789 Query: 326 LEKNIIFQTILYIA 339 L + +L +A Sbjct: 790 L--TWLTAALLQLA 801 >gi|229163348|ref|ZP_04291300.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803] gi|228620129|gb|EEK77003.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803] Length = 428 Score = 45.7 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 28/187 (14%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYNVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + + Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD--------LQSIGRR 278 Query: 261 LEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314 L + + I+ E+ P R + + + +D Sbjct: 279 LLIMAYEDVGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 338 Query: 315 HRIHLAR 321 +H R Sbjct: 339 AALHDLR 345 >gi|149010609|ref|ZP_01831980.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP19-BS75] gi|182683684|ref|YP_001835431.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14] gi|303255822|ref|ZP_07341863.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS455] gi|303261436|ref|ZP_07347384.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS292] gi|303264103|ref|ZP_07350024.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397] gi|303266286|ref|ZP_07352177.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457] gi|303268725|ref|ZP_07354515.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458] gi|147765090|gb|EDK72019.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP19-BS75] gi|182629018|gb|ACB89966.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14] gi|301801611|emb|CBW34309.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae INV200] gi|302597206|gb|EFL64311.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS455] gi|302637570|gb|EFL68057.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP14-BS292] gi|302641785|gb|EFL72142.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458] gi|302644216|gb|EFL74472.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457] gi|302646508|gb|EFL76734.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397] Length = 345 Score = 45.7 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCLE---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKVDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter xylanophilus DSM 9941] Length = 567 Score = 45.7 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 18/195 (9%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L++ + E +EA + GG + L ++SS+ + +T V+ Sbjct: 181 GTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFS--EGRVTVALVR 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +++ + E +A + + +A+ + D + + ++L + Sbjct: 239 ELLGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQFAAELISHLRVLMLLPH- 297 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKY 325 + E + + +R L+E R + + R+ Sbjct: 298 ------APEAALAEAGP----EERPALEEQARRIPTGETVRMIEALGETSGRIRRGGDPK 347 Query: 326 LEKNIIFQTILYIAQ 340 LE + L +A+ Sbjct: 348 LELELC---FLKLAR 359 >gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus OF4] gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus OF4] Length = 561 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 2/127 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ + E LL + EA ++ G + + L + SY + +T + V Sbjct: 180 NTAIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLLDQAISYA--EGPLTLEDV 237 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 I + ++ A + D + +L + + L Sbjct: 238 LAITGAVSEQVLVNLVEAVANKDSAVVLESLDQLVRDGKEPGRILEDLIYYMRDLLLCKT 297 Query: 267 IKECSNI 273 + ++ Sbjct: 298 APDSKDL 304 >gi|255325072|ref|ZP_05366178.1| recombination factor protein RarA [Corynebacterium tuberculostearicum SK141] gi|255297637|gb|EET76948.1| recombination factor protein RarA [Corynebacterium tuberculostearicum SK141] Length = 547 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 10/113 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 + L + I+ EA L+ GGD + L+ + + IT Q V D + Sbjct: 282 DRGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNVNKAV 341 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D H + I + + A+ + + + + Sbjct: 342 VRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLIVH 394 >gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44] Length = 892 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 ++ LEI + +E+ + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + + Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDSA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + LA + ++ +Q + L Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292 >gi|307708953|ref|ZP_07645413.1| DNA polymerase III, delta subunit [Streptococcus mitis SK564] gi|307620289|gb|EFN99405.1| DNA polymerase III, delta subunit [Streptococcus mitis SK564] Length = 345 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 30/269 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + +K+ L EE + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLVKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFE 276 L+ L +F+ ++ I+ E I + Sbjct: 247 IKLIAVMLGQFRTFTQVKILSESGQIEAQ 275 >gi|148989846|ref|ZP_01821140.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP6-BS73] gi|225854272|ref|YP_002735784.1| DNA polymerase III subunit delta [Streptococcus pneumoniae JJA] gi|225860738|ref|YP_002742247.1| DNA polymerase III subunit delta [Streptococcus pneumoniae Taiwan19F-14] gi|237650464|ref|ZP_04524716.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CCRI 1974] gi|237821906|ref|ZP_04597751.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CCRI 1974M2] gi|298229128|ref|ZP_06962809.1| DNA polymerase III subunit delta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255807|ref|ZP_06979393.1| DNA polymerase III subunit delta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502549|ref|YP_003724489.1| DNA-directed DNA polymerase III subunit delta [Streptococcus pneumoniae TCH8431/19A] gi|147924788|gb|EDK75872.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP6-BS73] gi|225723658|gb|ACO19511.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae JJA] gi|225728215|gb|ACO24066.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238144|gb|ADI69275.1| DNA-directed DNA polymerase III delta subunit [Streptococcus pneumoniae TCH8431/19A] gi|327390121|gb|EGE88464.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA04375] Length = 345 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + + +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98] Length = 428 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 22/184 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLED--ILITEQHVKDII 210 E+ L +++ EA + + GGD ++ N EL LSS+ ++ IT + ++ + Sbjct: 167 EKGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFATDEQAGEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-- 258 D H + + + A+ + + L ++ Sbjct: 227 QKKSFVHDKDGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD-----LQSICRRLLI 281 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRI 317 E I + + I+ E+ P R + + + +D + Sbjct: 282 MAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAAL 341 Query: 318 HLAR 321 H R Sbjct: 342 HDLR 345 >gi|148985886|ref|ZP_01818980.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP3-BS71] gi|148997159|ref|ZP_01824813.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP11-BS70] gi|168575424|ref|ZP_02721360.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae MLV-016] gi|307067367|ref|YP_003876333.1| DNA polymerase III subunit delta [Streptococcus pneumoniae AP200] gi|147756859|gb|EDK63899.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP11-BS70] gi|147922032|gb|EDK73156.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP3-BS71] gi|183578449|gb|EDT98977.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae MLV-016] gi|301799780|emb|CBW32349.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae OXC141] gi|306408904|gb|ADM84331.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae AP200] Length = 345 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|260654883|ref|ZP_05860371.1| putative DNA-binding protein [Jonquetella anthropi E3_33 E1] gi|260630385|gb|EEX48579.1| putative DNA-binding protein [Jonquetella anthropi E3_33 E1] Length = 305 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 18/180 (10%) Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 E + LF K+ I++E+ + + I + +++ + + + Sbjct: 42 GQLAEESCACGLFDAKRAIVVEDGLSLGPLPADWPAKIGEQDDVAVLL-----LYEKSP- 95 Query: 128 RKIAEKFTSVLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +K+ K +PD + + + +S++A +L+ + D Sbjct: 96 QKLLGKAAYAACRVVKNEPAPTWPDRRRE---WLVQLGRQEGIRLSRDAAALLVDWIE-D 151 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 R EL K I V + D + ++++A + + Sbjct: 152 EEELRGELDKFKL-AFPGAPIGVAEVNQLSSDEGGRALLDLLDAVADASLEGVKKSLESL 210 >gi|313125638|ref|YP_004035908.1| replication factor c large subunit [Halogeometricum borinquense DSM 11551] gi|312292003|gb|ADQ66463.1| replication factor C large subunit [Halogeometricum borinquense DSM 11551] Length = 487 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 56/156 (35%), Gaps = 18/156 (11%) Query: 82 KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFT 135 +++++++ ++ + ++ K N I++ +NE ++ LR Sbjct: 106 GRQLVIMDEADNIHGNYDRGGAGAITRLVKK--SNQPIVLIANEYYDMSSGLRSA----- 158 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I + ++ ++ + L +A + GD R+ ++ L + Sbjct: 159 -TREIEFRDVSARSIVPVLRDILRKEGIEFDSDALDRIAETNSGD---LRSAVKDLQAAA 214 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +T + V D + + E I++ ++ Sbjct: 215 DGADRLTVEDVVTGSRD-KAIGLFEYIDSVLKEDTA 249 >gi|145223251|ref|YP_001133929.1| hypothetical protein Mflv_2664 [Mycobacterium gilvum PYR-GCK] gi|315443711|ref|YP_004076590.1| DNA polymerase III subunit delta [Mycobacterium sp. Spyr1] gi|145215737|gb|ABP45141.1| DNA polymerase III, delta [Mycobacterium gilvum PYR-GCK] gi|315262014|gb|ADT98755.1| DNA polymerase III, delta subunit [Mycobacterium sp. Spyr1] Length = 319 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 31/290 (10%), Positives = 94/290 (32%), Gaps = 27/290 (9%) Query: 25 IFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + G ++ L+ E + + T P + + + + E+ S SLF Sbjct: 9 LVLGDEELLV-ERAVAAVLKSARKSAGTADVPVDRLRAGEVSVSE-----LAELLSPSLF 62 Query: 81 SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL----RKIAEKFT 135 + ++++++E+ + K+ + ++ +++I + + L +K+ + Sbjct: 63 ADERVVVLESAAEAGKEAVALIQSAAADLPAGTLLVIVHSGGGRAKALADHVKKLGAEVH 122 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 I+ D + + + + + +L +G D +L Sbjct: 123 PCARIA----KASERADFVRKEFRSLRVKVDDDTVTAVLDAVGSDIRELAAACSQLV--A 176 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + V+ + +I + + G + A + + + P L Sbjct: 177 DTGGSVDAAAVRRYHSGRAEVKGFDIADKAVLGDVAGAAEALRWAMMAGEPHVVLADALA 236 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 + + + + ++ + P + Q+ R W+++ Sbjct: 237 EAVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQARRWSRDS 280 >gi|308190065|ref|YP_003922996.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|307624807|gb|ADN69112.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] Length = 321 Score = 45.3 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 22/200 (11%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YGS+K I + IN+ K + F++ E +N+ + I+S LF+KK+I Sbjct: 4 IYGSEKFFIEQEINKIVKKFPNSAITTFNI------ENDENVDSLIQFISSGDLFNKKRI 57 Query: 86 ILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-----EIKKNNTLRKIAE 132 I+I +L S ++ ++ L + I N + +I + +N +I KN I Sbjct: 58 IVINDLFYFEKKLSSNDETNVNNLIKSIDNNSSDELIFVNTNISNKEQINKNFFTNFIFN 117 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K I + L + + +I A LL + D E+ KL Sbjct: 118 KLQQNNFIEANSIDDNQLTKKVVSLVQQKGGTIDALATSALLKKIPNDLYLINLEIDKLI 177 Query: 193 SYCLEDILITEQHVKDIICD 212 + ++ ITE + + D Sbjct: 178 N---QNKHITENMINVSVID 194 >gi|229031974|ref|ZP_04187959.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271] gi|228729329|gb|EEL80321.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271] Length = 130 Score = 45.3 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 11/118 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 +++ YG++ I E I F++V + E + + + F Sbjct: 15 PLYLVYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72 Query: 82 KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 ++K++LI++ L+++K+ L+ LEE I + I++ + ++ + L+ Sbjct: 73 ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKLQNY 130 >gi|148992428|ref|ZP_01822123.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP9-BS68] gi|168488434|ref|ZP_02712633.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP195] gi|147928745|gb|EDK79758.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP9-BS68] gi|183573102|gb|EDT93630.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP195] gi|332073111|gb|EGI83590.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA17570] Length = 345 Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|149021629|ref|ZP_01835660.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP23-BS72] gi|168486742|ref|ZP_02711250.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC1087-00] gi|168490852|ref|ZP_02714995.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC0288-04] gi|225856439|ref|YP_002737950.1| DNA polymerase III subunit delta [Streptococcus pneumoniae P1031] gi|147930090|gb|EDK81076.1| DNA polymerase III subunit delta [Streptococcus pneumoniae SP23-BS72] gi|183570239|gb|EDT90767.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC1087-00] gi|183574695|gb|EDT95223.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC0288-04] gi|225724471|gb|ACO20323.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae P1031] gi|332077179|gb|EGI87641.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA17545] gi|332202628|gb|EGJ16697.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA41317] Length = 345 Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + + +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|304372855|ref|YP_003856064.1| hypothetical protein MHR_0052 [Mycoplasma hyorhinis HUB-1] gi|304309046|gb|ADM21526.1| Putative uncharacterized protein [Mycoplasma hyorhinis HUB-1] Length = 317 Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 109/310 (35%), Gaps = 19/310 (6%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F YG+D + + Q F +V + + + +I N I + LF Sbjct: 6 FNMFFVYGTDSYFTKKKVEQILAKFID-----FEVVDVLSTDSFFDI---MNTITTRDLF 57 Query: 81 SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140 K+ + N K ++I K I + +I E+++ N +KI F Sbjct: 58 GSNKLFIFHNFLDTKLTNSEEKKIAKKLIDSSSPVIFLYELEEENQEKKIFSSFFYSHFF 117 Query: 141 S---CYPDNK---IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + ++ I + + Q +I + L L + EL KL Y Sbjct: 118 KSSSVFKTETLSDKTIIKFISKFIEENQGTIDESQLLTLSLKLPLNGSIIEKELNKLLLY 177 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D ITE+ +++++ INA + + + L+ Sbjct: 178 ---DKNITEESIENLLTKYDSDSDWNFINAFTDHDVASTWNFYKEKINQGKKIQFLISQL 234 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-LQESLRIWNKNLVRETLHKI 313 K +L I + + + I ++ + +I +K+ + + + I + + L KI Sbjct: 235 SSKL-MLAFICFLYKEEKYNEFDIQKELQIHIFQVKKAVQFYKKIGITKLQELIKLLAKI 293 Query: 314 DHRIHLARKK 323 D +I + Sbjct: 294 DRKIKSNQVN 303 >gi|193216667|ref|YP_001999909.1| DNA polymerase III, delta subunit [Mycoplasma arthritidis 158L3-1] gi|193001990|gb|ACF07205.1| DNA polymerase III, delta subunit [Mycoplasma arthritidis 158L3-1] Length = 322 Score = 45.3 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 113/328 (34%), Gaps = 34/328 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ G++ I E + + + Y + F + + + N + I++T +FS Sbjct: 1 MYFIRGNENYFIDEEVAKISNALQSQYGENFKVYLFSQQF---NFEEVVDLISNTDIFST 57 Query: 83 KKIILIE--------NLSTEKKVLDCLEEIIIKNICNHIIIIK------SNEIKKNNTLR 128 K+++ + N +K ++D +I + + I+ + K + L Sbjct: 58 NKLLIFKDLLWFNEKNAKVDKNLVDEFLYLISTAVSDSTIVFTNFQEKYAKTFKP-SELY 116 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K EK ++ + D + +++ + +I L+++L + NE+ Sbjct: 117 KFIEKNAKLIEVEKLSD--RQIYAFVQKLIKSRGGTIDDFTLVELVSSLPNNLNLIENEI 174 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS---KM 245 +L E IT + + +A I K + + + Sbjct: 175 TRLML---EKKEITPGMIANSNLSISSNISYAFSDAFI--KFNSFSEIIKKLQEQLNYGI 229 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 +L Q ++I+ +K S + I + +I + +L L + Sbjct: 230 HPSQILAQIAQILSDCQRIYFLK-KQAQSLDNIAKSLNLHIY--RIKLLNSLLIKLEYSQ 286 Query: 306 VRE---TLHKIDHRIHLARKKKYLEKNI 330 V+ L K+D I R L I Sbjct: 287 VKRSLNELSKLDEDIKNDRIDGGLGLKI 314 >gi|269114978|ref|YP_003302741.1| hypothetical protein MHO_2040 [Mycoplasma hominis] gi|268322603|emb|CAX37338.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 320 Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 126/329 (38%), Gaps = 27/329 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G D LI + + + D + ++++++ ++I + SLFS Sbjct: 1 MYLIRGEDSYLINQELQKIIDLKFENQDDYSVITYNESIDLEQ----LSDDIFNQSLFSF 56 Query: 83 KKIILI--------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------NTLR 128 KK +++ + K ++ +++ K N++I I +IKKN + Sbjct: 57 KKQVIVLKNIDFFNSKKKNDNKKMNDFLQLLEKGQDNNLIFILQ-DIKKNDISFNPSLAY 115 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K E + ++ I + + + I+E +L +IS L+ D NE+ Sbjct: 116 KKIEYISKIIEIK--KPSDKDVYNYIKEYILKNGGNISSTTLLDFLSMFPNDLQQIINEV 173 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 KL ++ + I D + I ++ K + I D + Sbjct: 174 DKLLLQNKNIDMLLINNSNIISSDNIEFNLSNCI---LKQKSIDIIEAIDEQKKYGNGAS 230 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 +L F + +++ E N S + I KT +I + + ++ NK+ ++E Sbjct: 231 EILSQISYLFYQIYCTYLLME--NTSDNEYISKTL-SIHSYRIKLFMSYIKRTNKHKLKE 287 Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILY 337 + + + E+N + + IL+ Sbjct: 288 LIELLADIDIAIKSGLLDEENALNKFILF 316 >gi|227824061|ref|YP_002828034.1| DNA polymerase III subunits gamma and tau [Sinorhizobium fredii NGR234] gi|227343063|gb|ACP27281.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium fredii NGR234] Length = 645 Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + + Sbjct: 222 ASDLVGLFSTILNKEAVRFEPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEMET 278 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G A+ + +L L+ ++ Sbjct: 279 VRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMK 338 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + E +N I++ + + RIW L I AR Sbjct: 339 YVPEAANDQSFSEIER-RRGAEFAGSVAVTTLSRIWQM-----LLKGIPEAESSARPAGA 392 Query: 326 LEKNIIF 332 E +I Sbjct: 393 AEMVLIR 399 >gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42] gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42] Length = 624 Score = 45.3 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 50/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L + + Sbjct: 200 ASDLVGLFTTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGAVQAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + +L L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAGALGEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + +N I++T+ K + RIW Sbjct: 317 YVPDAANDPSLSEIERTKAA-EFAKSIAVTTLSRIW 351 >gi|311739533|ref|ZP_07713368.1| replication-associated recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305349|gb|EFQ81417.1| replication-associated recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] Length = 463 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 10/113 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 + L + I+ EA L+ GGD + L+ + + IT Q V D + Sbjct: 198 DRGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNVNKAV 257 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D H + I + + A+ + + + + Sbjct: 258 VRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLIVH 310 >gi|220904889|ref|YP_002480201.1| DNA polymerase III delta [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869188|gb|ACL49523.1| DNA polymerase III delta [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 346 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 34/319 (10%), Positives = 84/319 (26%), Gaps = 62/319 (19%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII------ 116 ++ FW + LF + +++ + V + + + Sbjct: 56 EEPPQGFWEHLTLQGLFGAPRALVVRQANLWPAAVWKKISHALARPSDQCWPFFCLEVNW 115 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQK 163 + + K L K+ C + D + + + + Sbjct: 116 ERGQPKIPAHLGKL----------PCMAFADKKGWIWRQEGLGERTVRKYVLQRCQALGL 165 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCL----------EDILITEQHVKDIICDT 213 + +A + A++ D +A NEL KL C +D ++ +I Sbjct: 166 RFAPDALEQFCASVPPDALAIENELDKLILLCRAMADSAQEQKDDGTVSL----AMISTA 221 Query: 214 H---VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + I G + +LL ++ +LL + Sbjct: 222 SWSPECDVFACIRHMQAGNLAAVWKELARNKDGDSLLFSLLALLAREMRLLWQCQ----- 276 Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK-KKYLEKN 329 + P + ++ R + + + I + ++ +++ Sbjct: 277 ---------AGENPRMRPQDASAKKQLARRLGPAAIAQGMSLIVDAELQVKSGRRSPDQS 327 Query: 330 IIFQTILYIAQTACKNNNF 348 + F A A Sbjct: 328 LDFLAARMTALFAQVQGRA 346 >gi|310779150|ref|YP_003967483.1| DNA polymerase III delta [Ilyobacter polytropus DSM 2926] gi|309748473|gb|ADO83135.1| DNA polymerase III delta [Ilyobacter polytropus DSM 2926] Length = 332 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 96/252 (38%), Gaps = 20/252 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 ++ YG + + KK I DP + QK F I+ S+F Sbjct: 5 LYFIYGDNP--LELKYEDMKKEIIKK--DPGIVPRY-FDVSQKEEEDFLQAISINSMFGG 59 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-----KKNNTL-RKIAEK-FT 135 ++++++ KK + ++ + NI N +II E K N + +K+ ++ Sbjct: 60 SELLVLKRFQLLKKPENFVKAMENYNIVNKDVIILYEESLNAFGKPENPVVKKLLDRISK 119 Query: 136 SVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + I + N L+ + L I + LL +G D + R E++K+ + Sbjct: 120 NFKVIEARQGKNGKSLVFYVSSEL-----EIKENDADKLLQMIGRDSMQVRQEVEKIKLF 174 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + T + +K II + +++ +++ + G N + + M +L Sbjct: 175 LGGEK-FTFEKIKGIISLSREYHMKNLVDEFLAGNKENLLYHLKHE-KNYMSFIYILSNE 232 Query: 255 LQKFQLLEKIHI 266 L L+ + Sbjct: 233 LDILLKLKMLQA 244 >gi|109946865|ref|YP_664093.1| DNA polymerase III subunit delta [Helicobacter acinonychis str. Sheeba] gi|109714086|emb|CAJ99094.1| putative DNA polymerase III, delta subunit [Helicobacter acinonychis str. Sheeba] Length = 335 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 102/306 (33%), Gaps = 30/306 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I + + + A + +K S + SLF Sbjct: 11 KAVFLYGEFDFFIHYYTQAISSLFKLN-NPNIETSLFYASDYEK--SLIMTLLEQDSLFG 67 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129 + +++++ + + KK + L ++ ++ +II K + T + K Sbjct: 68 ESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSEAIVK 127 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + L++E + IS L D + N Sbjct: 128 FFQKSPLKDEAIYARFFTPKTWESLKLLQERANVLHLDISNHLLNTLFEINNEDLGIAFN 187 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ IT + ++++ + + ++++I K + + + D+ L Sbjct: 188 DLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKR 242 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306 +L G + F L + + K I + I + ++ N + Sbjct: 243 DADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPP-----KEITENYIK--NAPRL 295 Query: 307 RETLHK 312 +E +K Sbjct: 296 KEAGYK 301 >gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062] Length = 640 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 56/171 (32%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ L+ E IS EA ++ G S + L + I Sbjct: 226 ESSTLVSLLREISGKEGIEISDEALTLIARAGEGSARDSLSLLDQAI--AHGAGRIEADE 283 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ ++G I +A+ +L L+ ++ Sbjct: 284 VRQMLGLADRSRVIDLFEHVMRGDIASALDELKAQYDVGADPAVVLSDLADFTHLVTRLK 343 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + + ++ ++ ++ R W ++ + ++++ + Sbjct: 344 AVPKAGEENSVTESERQR-GREFAEKLSMRVLSRTW--QILLKGINEVQNA 391 >gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27] Length = 901 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 ++ LEI + +EI + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + + Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDSA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + LA + ++ +Q + L Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292 >gi|294808126|ref|ZP_06766895.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|294444669|gb|EFG13367.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 178 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 62/179 (34%), Gaps = 8/179 (4%) Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIIN 223 + +A +L +G D EL+KL +T + ++ I + E+ + Sbjct: 1 MEPKATSMLADFVGSDLSRLTGELEKLIITLPAGQKRVTPEQIEKNIGISKDYNNFELRS 60 Query: 224 ATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 A ++ I A + +F + K + L F + + + Sbjct: 61 ALVEKDILKANKIIKYFEENPKTNPIQMTLSLLFSFYSNLMLTYYAPDKSEQGIANMLGL 120 Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338 R+ + ++R ++ + + +I + ++ + + +I+ + + I Sbjct: 121 RTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYADAKSKGVQNSSMTDGDILRELVFKI 176 >gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum indicum S5] gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5] Length = 420 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 26/201 (12%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + L+E ++ EA++ ++ GD N ++ + C + IT Q Sbjct: 164 DDEDMGRLVERGCAELGVTMDDEAREAIMTLCSGDGRRCLNTIEAAALLCQGN-HITRQD 222 Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++D D H YI I + +A+ L + + Sbjct: 223 IQDSTPRKIVRYDKNEDNHYDYISAFIKSVRGSDPDSALYYLAVMLEAGEDPLFIARRLA 282 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK------RNILQESLRIWNK-NLVRE 308 I ++ N + I I + R L ++ Sbjct: 283 --------ILASEDIGNAAPGAINMAASTMTIVERIGMPEARITLAQTTVYLCLSPKSNA 334 Query: 309 TLHKIDHRIHLARKKKYLEKN 329 ID + R+++ LE Sbjct: 335 AYLAIDKALASVRRERVLEVP 355 >gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] gi|158447261|gb|EDP24256.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270] Length = 540 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 59/162 (36%), Gaps = 11/162 (6%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 L +I+ + + I I+ + EI K +T+ ++F N +++ I L Sbjct: 139 ALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRI------NNSDIVENINYVL 192 Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLEDILITEQHVKDIICDTHVLY 217 I ++ ++ G A R+ L L IT + + + + ++ Sbjct: 193 NNLNVEIEEDGINLISELSSG---AMRDALSLLDQVVATGKEKITIEDINECLGLVNLNM 249 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + E+ + + I + + H ++ ++ F+ Sbjct: 250 LFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFR 291 >gi|228987651|ref|ZP_04147765.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772111|gb|EEM20563.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 428 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLETAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|319777359|ref|YP_004137010.1| DNA polymerase iii delta subunit [Mycoplasma fermentans M64] gi|238809535|dbj|BAH69325.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038434|gb|ADV34633.1| DNA polymerase III delta subunit [Mycoplasma fermentans M64] Length = 321 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 22/200 (11%) Query: 26 FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85 YGS+ I + IN+ K + F++ E +N+ + I+S LF+KK+I Sbjct: 4 IYGSENFFIEQEINKIVKKFPNSAITTFNI------ENDENVDSLIQFISSGDLFNKKRI 57 Query: 86 ILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-----EIKKNNTLRKIAE 132 I+I +L S ++ ++ L + I N + +I + +N +I KN I Sbjct: 58 IVINDLFYFEKKLSSNDETNVNNLIKSIDNNSSDELIFVNTNISNKEQINKNFFTNFIFN 117 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K I + L + + +I A LL + D E+ KL Sbjct: 118 KLQQNNFIEANSIDDNQLTKKVVSLVQQKGGTIDALATSALLKKIPNDLYLINLEIDKLI 177 Query: 193 SYCLEDILITEQHVKDIICD 212 + ++ ITE + + D Sbjct: 178 N---QNKHITENMINVSVID 194 >gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter alkaliphilus HTCC2654] gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2654] Length = 576 Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + T Sbjct: 188 EPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 245 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++I+ ++G A+ A A+L + + I Sbjct: 246 VRAMLGLADRGRVLDLIDMILRGDAAGALAELSAQYADGADPMAVLRDLAEVTHWVSVIK 305 Query: 266 IIKECSNISFEKIIQKTE 283 I E + ++ Sbjct: 306 ITPEAAEDPTVSPDERAR 323 >gi|322376318|ref|ZP_08050811.1| DNA polymerase III, delta subunit [Streptococcus sp. M334] gi|321282125|gb|EFX59132.1| DNA polymerase III, delta subunit [Streptococcus sp. M334] Length = 345 Score = 45.0 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 97/272 (35%), Gaps = 23/272 (8%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 +F G+D+G + +Q K I D + + E+ E+ S F+ +K Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSAD-LNFAYFDMKEVAYKDVEL--ELVSLPFFADEK 76 Query: 85 IILIEN----LSTEKKVLD-----CLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKF 134 I+++++ + +K+ L EE + ++I ++ L K+ ++ Sbjct: 77 IVILDHFVDVTTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFVEGKLDSKRRLVKLLKRD 136 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 + L ++ + + + LL G +E+QK + Sbjct: 137 --AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLIKSG----FQFSEVQKNLLF 190 Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 ED +I E+ + + I T I ++ + K+ A L L+ Sbjct: 191 LQSYKEDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDKARDLVRDLTLQGEDEIKLI 250 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L +F+ ++ I+ E S + +I Sbjct: 251 AVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|332076043|gb|EGI86509.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA41301] Length = 345 Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + L G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENFLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|223939210|ref|ZP_03631092.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] gi|223892163|gb|EEF58642.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514] Length = 609 Score = 45.0 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 57/368 (15%) Query: 7 HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKK--------NISITYHDPF-- 53 + + ++ N S+ + ++F G + F K + DP Sbjct: 21 QEHVSQTLSNAIASNRIAHAYLFVGPRGTGKTTIARIFAKCLNCTGGPKVDFPDDDPRCQ 80 Query: 54 ---SLVVLNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLE 102 L+ LEI + EI SK KI +I+ + K+ + L Sbjct: 81 EITEGRSLDVLEIDGASNRGIEEIRELRDTVKYAPATSKFKIYIIDEVHMLTKEAFNALL 140 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL-MDLIEESLL 159 + + + + + E + I C + + LI + L Sbjct: 141 KTLEEPPAHVKFMF------------ATTEPEKVLPTILSRCQRFDLRRIPSALITKHLA 188 Query: 160 I----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 + I A + G + + L +L S+C + I E V + T Sbjct: 189 HISKLEKVKIDSGALDAIARGAEGGMRDAESTLDQLISFCGDK--IEEADVLSMFGLTAR 246 Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 I + + + G+ A+ + + L+ L F+ L + K + Sbjct: 247 GQILGLSKSILAGQADVALRELNDLSKNGKDLGRLVSDLLNHFRNLLIFQVSKGDLGLLE 306 Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 + L E + + + + + R + K I+ + Sbjct: 307 VSEAEAA----------SLSEQGAGSSTDALTRIMEVLSDC--EMRLRDASSKKILVEVA 354 Query: 336 LYIAQTAC 343 L A A Sbjct: 355 LLKAIEAR 362 >gi|260890414|ref|ZP_05901677.1| putative DNA polymerase III, delta subunit [Leptotrichia hofstadii F0254] gi|260860034|gb|EEX74534.1| putative DNA polymerase III, delta subunit [Leptotrichia hofstadii F0254] Length = 327 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 78/184 (42%), Gaps = 12/184 (6%) Query: 60 ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--K 117 +++++N F +IN S+FS +++++++ K + + L+ ++ I N III Sbjct: 35 DVDLKEN-EKFLEKININSIFSSQELVVLKRAEKLKNIEEILKYVVNLEIVNKEIIIDYD 93 Query: 118 SNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 + K L+K+ + K + + + + + L SI+ +LL Sbjct: 94 KEDGKFGVKLKKLLDEFSKNKQMEVFLFQKETEEEIRAYVINEL-----SINARDVAMLL 148 Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234 +G + RNE+ K+ + L+ + +K+I+ I E+ + + + Sbjct: 149 EMIGNNPFKVRNEVAKIKIF-LDGEKFDIEKIKNIVSIEKEYQIYEMTRNILLNNPADVM 207 Query: 235 MLAD 238 + Sbjct: 208 RYLE 211 >gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 626 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 50/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L + + Sbjct: 200 ASDLVGLFSTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGAVQAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + +L L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALGEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + +N +++T+ K + RIW Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKGVAVTTLSRIW 351 >gi|307706319|ref|ZP_07643131.1| DNA polymerase III, delta subunit [Streptococcus mitis SK321] gi|307618237|gb|EFN97392.1| DNA polymerase III, delta subunit [Streptococcus mitis SK321] Length = 345 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI+++++ + +K+ L EE + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + ED +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKEDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILSE-SGQTESQIASSLG 281 >gi|300118684|ref|ZP_07056412.1| DNA polymerase III subunit delta [Bacillus cereus SJ1] gi|298723933|gb|EFI64647.1| DNA polymerase III subunit delta [Bacillus cereus SJ1] Length = 130 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 11/117 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ YG++ I E I F++V + E + + + F + Sbjct: 16 LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73 Query: 83 KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130 +K++LI++ L+++K+ L+ LEE I + I++ + ++ + L+ Sbjct: 74 RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKLQNY 130 >gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus TCF52B] Length = 480 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 31/228 (13%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 ++ LEI + +EI + K+ +I+ + K+ + L + + + Sbjct: 86 MDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDN--KIHLMDLIEE---SLLIGQKS 164 N + I + N EK + C + + + D+I+ + Sbjct: 146 SNVVFI-----LATTNP-----EKIPQTIISRCQVIDFKNLTIEDIIKRLEFVCKKENIN 195 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 IS+EA + G + L+++S IT + V++ + + I E+I++ Sbjct: 196 ISQEALNEIAKRANGGMRDALTILEQVS--KSSSKDITIEDVRETLGLVPIEVINEMIDS 253 Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 G I + + S L QLLE++ + E + Sbjct: 254 IKIGDIKKTTEIIEKVYFSGKDPEVFL------MQLLEEMILKIESGD 295 >gi|217032307|ref|ZP_03437803.1| hypothetical protein HPB128_132g5 [Helicobacter pylori B128] gi|216945973|gb|EEC24587.1| hypothetical protein HPB128_132g5 [Helicobacter pylori B128] Length = 274 Score = 44.6 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 23/254 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISTLFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKI------- 130 +++++ + + KK + L ++ ++ +II K + T K Sbjct: 73 GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLIIGLYNAKSDTTKYKYTSEIIVK 132 Query: 131 -AEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + ++E IS L D S N Sbjct: 133 SFQKSPLKDEAICARFFIPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSISFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +L KL+ + IT + ++++ + + ++++I K + + + D+ L Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247 Query: 247 SHALLHGFLQKFQL 260 +L G + F Sbjct: 248 DADILRGLERYFYQ 261 >gi|148653629|ref|YP_001280722.1| DNA polymerase III subunit delta [Psychrobacter sp. PRwf-1] gi|148572713|gb|ABQ94772.1| DNA polymerase III, delta subunit [Psychrobacter sp. PRwf-1] Length = 355 Score = 44.6 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 101/295 (34%), Gaps = 42/295 (14%) Query: 73 EINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTL 127 E+NS SLF I++ N +K V D L N N ++ + + + Sbjct: 69 ELNSLSLFDDATAIIVTGNHKPDKSVQDELTAFATDANTGNNPNSVLWLTAK-VDNRAKS 127 Query: 128 RKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 K + I C N+ L++ ++ EA Q L+ +++ Sbjct: 128 SKWYQPFAQLGHVIDCNLYNENQRQQLLQIHAHRFGLALVPEAWQFLMMQTEHHLLSAYQ 187 Query: 187 ELQKLS-SY------------------CLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 L +LS + I I + ++ + + ++ +A + Sbjct: 188 ALWRLSYLFSPQIPSQAEGELNAQNTPAPPLITIDVEALQSALVSDAQYSVFDLSDAMLA 247 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 G + + + +++ P+ +L + + +I + + + I Sbjct: 248 GNAAQVVKIIEQLKSTEEPTPLVLWAISKD------MRLIMQLMGGKDAQSL-----GIW 296 Query: 288 PMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 K+++ + R + + + + L++ D + ++ E +I Q L + Sbjct: 297 SSKQSLYHSACRRQSLHSIADWPDILYQCDKAVKGLVRQPAWE--LILQAALRVT 349 >gi|330723562|gb|AEC45932.1| DNA polymerase III subunit delta [Mycoplasma hyorhinis MCLD] Length = 310 Score = 44.6 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 116/326 (35%), Gaps = 25/326 (7%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +F YG+D + + Q F +V + + + +I N I + LF Sbjct: 1 MFFVYGTDSYFTKKKVEQILAKFID-----FEVVDVLSTDSFFDI---MNTITTRDLFGS 52 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS- 141 K+ + N K ++I K I + +I E+++ N +KI F Sbjct: 53 NKLFIFHNFLDTKLTNSEEKKIAKKLIDSSSPVIFLYELEEENQEKKIFSSFFYSHFFKS 112 Query: 142 --CYPDNK---IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + ++ I + + Q +I + L L + EL KL Y Sbjct: 113 SSVFKTETLSDKTIIKFISKFIEENQGTIDESQLLTLSLKLPLNGSIIEKELNKLLLY-- 170 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D ITE+ +++++ INA + + + L+ Sbjct: 171 -DKNITEESIENLLTKYDSDSDWNFINAFTDHDVASTWNFYKEKINQGKKIQFLISQLSS 229 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR--ETLHKID 314 K +L I + + + I ++ + +I ++++++ + K + + L K+ Sbjct: 230 KL-MLAFICFLYKEEKYNEFDIQKELQIHIF-----QVKKAVQFYKKTGITKLQELIKLL 283 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQ 340 +I K + + F+ L ++ Sbjct: 284 AKIDRKIKSNQVNEKDAFEYFLLMSI 309 >gi|254819866|ref|ZP_05224867.1| hypothetical protein MintA_08074 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 44.6 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 32/293 (10%), Positives = 92/293 (31%), Gaps = 28/293 (9%) Query: 22 FVFIFYGSDKGLIFELI-----NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76 + + G ++ L+ E +K P + + + + E+ S Sbjct: 6 PLHLVLGDEELLV-ERAVADVLRSARKRAGNDADIPVNRMRAGDVSTYE-----LAELLS 59 Query: 77 TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIA 131 SLF+ ++I+++E + + + ++++ S + L+K+ Sbjct: 60 PSLFADERIVVLEAAGEAGKDAAAVIVSAATDMPAGVVLVVVHSGGGRAKALATDLQKLG 119 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 + I+ + +D + + + ++ +L +G D + +L Sbjct: 120 AQVHPCARITKLSER----IDFVRKEFRALRVKADEQTVTAMLDAVGSDLRELASACSQL 175 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 + V+ + +I + + G I A + + P L Sbjct: 176 V--ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLA 233 Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 + + + + ++ + P + Q+ R W+++ Sbjct: 234 DALAEAIHTIGR----VGPLSGDPYRMASQLGMP--PWRVQKAQKQARHWSRD 280 >gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM 2008] gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM 2008] Length = 895 Score = 44.6 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 ++ LEI + +E+ + + +KK+ +I+ + + L + I + Sbjct: 88 MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + + + Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFDLDSA 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A Q++ + G + + L + + IT Q V+++I +I ++A G Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + LA + ++ +Q + L Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292 >gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter gallaeciensis BS107] Length = 606 Score = 44.6 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 37/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+++ I+++A ++ G + + L + T Sbjct: 195 EPEVMIGLLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 252 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++I+ ++G A+ A A+L Sbjct: 253 VRAMLGLADRGRVLDLIDMILRGDAAAALTELSAQYAEGADPLAVLRDL 301 >gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes str. 4b H7858] gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes 1816] Length = 579 Score = 44.2 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ L + ++A I+ G + + L ++ SY + + Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVAVED 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +I + ++++A G AI LA L+ L F+ Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290 >gi|466975|gb|AAA17161.1| B1937_F2_36 [Mycobacterium leprae] Length = 389 Score = 44.2 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 80/237 (33%), Gaps = 17/237 (7%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKN---NTL 127 E+ S SLF+ ++I+++E + K L ++++ S + N L Sbjct: 122 ELLSPSLFADERIVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANEL 181 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + I+ + D + + L + + + A LL +G D + Sbjct: 182 QSLGATVHPCARITKLSERT----DFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASA 237 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A+ + + P Sbjct: 238 CSQLV--ADTAGDVDADAVQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPL 295 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L E +H I +S + + + P + Q+ R W+++ Sbjct: 296 VVLADALA------EAVHTIGRVGPLSGDSYRLASRLGMPPWRVQKAQQQARRWSRD 346 >gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ] gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ] Length = 551 Score = 44.2 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 51/171 (29%), Gaps = 12/171 (7%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ + E I+ A ++ G S ++ ++C + + V Sbjct: 182 KIVGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCGN--TVAVEDVAT 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + E+ +A G A+ A + F+ L I + Sbjct: 240 LVGVVDRRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHFRNLLVIRSV- 298 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 +I+ E + +++ ++ + ++ L + Sbjct: 299 ----PKPGEILDLAEAELEELRQQAGEQ-----SAADIQRRLTLLVKAESE 340 >gi|229086962|ref|ZP_04219119.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44] gi|228696338|gb|EEL49166.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44] Length = 435 Score = 44.2 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 20/187 (10%) Query: 152 DLIEES--LLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQH 205 LI++ L +++ EA GGD ++ N EL LSS+ +D IT Sbjct: 169 ALIDKEKGLGEYNVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQEVEITLDI 228 Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ++ + D H + + + A+ + + ++ L Sbjct: 229 AEECLQKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL 287 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314 E I + + I+ E+ P R + + + +D Sbjct: 288 --IMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 345 Query: 315 HRIHLAR 321 +H R Sbjct: 346 AALHDLR 352 >gi|269926492|ref|YP_003323115.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum ATCC BAA-798] Length = 550 Score = 44.2 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 I K+A + G + + L +L+ Y D IT +HVK ++ + Sbjct: 192 ENIKIQKDALIAIAKASTGSLRDAISILDQLTVY--GDEEITLEHVKQLLGIVGEDVVAN 249 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 + A I A+ L + + + L + + ++ + + + Sbjct: 250 FVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKAYNQNASKAGIERVS 309 >gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L] gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L] Length = 428 Score = 44.2 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 22/184 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-- 258 D H + + + A+ + + L ++ Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD-----LQSISRRLLI 281 Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRI 317 E I + + I+ E+ P R + + + +D + Sbjct: 282 MAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAAL 341 Query: 318 HLAR 321 H R Sbjct: 342 HDLR 345 >gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus carboxydivorans Nor1] Length = 351 Score = 44.2 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 2/128 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + + E +I+ +A +++ + G + + L + + L+D +T HV+ Sbjct: 181 KEIEGRLAEVAAKNNLNITPDALKLIAVHADGGMRDALSILDQCT--ALDDTAVTVTHVR 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ I I A ++ D +A LL Q + L Sbjct: 239 QLLGLIGHEGIWRITAALANRDSTAVLLALDELVALGKDVRQLLLELAQHLRSLMLFKAA 298 Query: 268 KECSNISF 275 + I Sbjct: 299 PDVETIDM 306 >gi|15827245|ref|NP_301508.1| hypothetical protein ML0603 [Mycobacterium leprae TN] gi|221229723|ref|YP_002503139.1| hypothetical protein MLBr_00603 [Mycobacterium leprae Br4923] gi|2398690|emb|CAB16150.1| hypothetical protein MLCL536.07c [Mycobacterium leprae] gi|13092794|emb|CAC30111.1| putative lipoprotein [Mycobacterium leprae] gi|219932830|emb|CAR70696.1| putative lipoprotein [Mycobacterium leprae Br4923] Length = 371 Score = 44.2 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 80/237 (33%), Gaps = 17/237 (7%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKN---NTL 127 E+ S SLF+ ++I+++E + K L ++++ S + N L Sbjct: 104 ELLSPSLFADERIVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANEL 163 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + + I+ + D + + L + + + A LL +G D + Sbjct: 164 QSLGATVHPCARITKLSERT----DFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASA 219 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A+ + + P Sbjct: 220 CSQLV--ADTAGDVDADAVQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPL 277 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 L E +H I +S + + + P + Q+ R W+++ Sbjct: 278 VVLADALA------EAVHTIGRVGPLSGDSYRLASRLGMPPWRVQKAQQQARRWSRD 328 >gi|30350173|gb|AAP31481.1| putative DNA polymerase III [Western X phytoplasma] Length = 579 Score = 44.2 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + I+ EA + A G + N L K+SSY + LI ++ ++ ++ I Sbjct: 193 EEKILITDEALTTIAAYSDGSMRDALNLLDKISSYKIN--LIEKKDIEKMLGVISESKIN 250 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 ++ +Q I I + L + L + FQ L H+ N + +++ Sbjct: 251 QLAEYLVQPDINQMIAFLELILKPNVQISPFLDDLIDFFQKLLLEHVTNPQENTNLFRLL 310 Query: 280 QKTEKNIIP 288 +++N Sbjct: 311 TNSKRNEFF 319 >gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 476 Score = 44.2 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|227503535|ref|ZP_03933584.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium accolens ATCC 49725] gi|227075571|gb|EEI13534.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium accolens ATCC 49725] Length = 461 Score = 44.2 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 + L +I+ EA L+ GGD S L+ + + IT + D + Sbjct: 205 DRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNVNRAV 264 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D H I + + A+ + + + + Sbjct: 265 VRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLMVH 317 >gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] Length = 423 Score = 44.2 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 15/180 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDII--- 210 E L SI +A + GD ++ N L+ IT Q +D + Sbjct: 168 ERGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSANNQPPHITLQDAEDCLQRG 227 Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 D H + + + A+ + + + + E Sbjct: 228 AFLSDKDGDMHYDVMSAFQKSIRGSDVDAALHYLGRLIQAGDLPTIARRLLVISY---ED 284 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLARK 322 I + + I+ E+ P R L ++ + + + ID + RK Sbjct: 285 IGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSAIRSIDAALSDIRK 344 >gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241] gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241] Length = 431 Score = 44.2 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|306836214|ref|ZP_07469198.1| replication-associated recombination protein A [Corynebacterium accolens ATCC 49726] gi|304567935|gb|EFM43516.1| replication-associated recombination protein A [Corynebacterium accolens ATCC 49726] Length = 461 Score = 44.2 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 + L +I+ EA L+ GGD S L+ + + IT + D + Sbjct: 205 DRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNVNRAV 264 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D H I + + A+ + + + + Sbjct: 265 VRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLMVH 317 >gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam] gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] Length = 474 Score = 44.2 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342] gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342] Length = 428 Score = 44.2 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99] Length = 423 Score = 44.2 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 15/180 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDII--- 210 E L SI +A + GD ++ N L+ IT Q +D + Sbjct: 168 ERGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSANNQPPHITLQDAEDCLQRG 227 Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 D H + + + A+ + + + + E Sbjct: 228 AFLSDKDGDMHYDVMSAFQKSIRGSDVDAALHYLGRLIQAGDLPTIARRLLVISY---ED 284 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLARK 322 I + + I+ E+ P R L ++ + + + ID + RK Sbjct: 285 IGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSAIRSIDAALSDIRK 344 >gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271] gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271] Length = 428 Score = 44.2 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|15639576|ref|NP_219026.1| hypothetical protein TP0588 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025815|ref|YP_001933587.1| hypothetical protein TPASS_0588 [Treponema pallidum subsp. pallidum SS14] gi|3322883|gb|AAC65563.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018390|gb|ACD71008.1| hypothetical protein TPASS_0588 [Treponema pallidum subsp. pallidum SS14] Length = 254 Score = 44.2 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 ++ + I +EA + LL + + A + +LS + + IT + ++ T Sbjct: 131 VQRFFFQHEMRIEQEAIESLLELVENNTRALKTVCTQLSLFFEKGRRITAHDISSLLVHT 190 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHGFLQKFQLLE 262 + +A + + +++M+ + L SK +L G L + L Sbjct: 191 KEETSFTLFDALSKRDLEHSLMILNTLLCSKDVAPVQILAGLLTRSVALR 240 >gi|262200018|ref|YP_003271227.1| DNA polymerase III subunits gamma/tau [Haliangium ochraceum DSM 14365] gi|262083365|gb|ACY19334.1| DNA polymerase III, subunits gamma and tau [Haliangium ochraceum DSM 14365] Length = 649 Score = 44.2 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 L++ + + + A +++ GG S + ++ SY I E V + Sbjct: 182 KLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYV-GTSNIGESDVAE 240 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ +++A +G +A+ + A + L ++ + L + + Sbjct: 241 VLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARAIVRYLRDLAVMQVAP 300 Query: 269 ECSNI 273 E + Sbjct: 301 EAEGL 305 >gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293] gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293] Length = 428 Score = 43.8 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97] gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97] Length = 428 Score = 43.8 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC 10379] Length = 569 Score = 43.8 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 89/262 (33%), Gaps = 33/262 (12%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68 ++ + +SH ++FYGS + F + ++ + ++ +EI + Sbjct: 26 VLKNAIDKDQISH-AYLFYGSRGTGKTSIAKIFAN--EVNGNEIYQKENVDIIEIDAASN 82 Query: 69 TFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +E+ K K+ +I+ + + L + + + + I I+ Sbjct: 83 NGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL---- 138 Query: 121 IKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL--MDLIEE---SLLIGQKSISKEAKQIL 173 E I C +L LI+ I + A + + Sbjct: 139 --------ATTEIHKIPATILSRCQRFEFKNLSQEQLIDRLKYIAKEENLVIEEAAIEKI 190 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 G + + L ++S+Y IT H+ ++ I E +QG + + Sbjct: 191 ATLAKGGLRDAISILDQVSNYA---EEITLNHILEVTSSISEDDILEFYRGLLQGDVTKS 247 Query: 234 IMLADFFLASKMPSHALLHGFL 255 ++ + F+A + LL+ + Sbjct: 248 LLKYNEFVAQAKDTKLLLNDLI 269 >gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 428 Score = 43.8 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNTAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571] gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571] Length = 613 Score = 43.8 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 2/127 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + S+ EA I+ G S + L + +T + Sbjct: 210 EAGVLAAHLSRICAKENVSVDAEALSIVARAAEGSVRDSLSLLDQAI--AHGGGAVTGEE 267 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ +A ++G + A+ S +L + L+ ++ Sbjct: 268 VRRLLGLADKARVIDLFDALMKGDMPRALAEFRDQYDSGADPAVILTDLAEFTHLVTRLK 327 Query: 266 IIKECSN 272 I+ + ++ Sbjct: 328 IVPDSAS 334 >gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM 11548] Length = 324 Score = 43.8 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 45/235 (19%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 G+I E + +F + + PF LV+L+ + + S + + ++I+ I Sbjct: 82 GVIRERVKEFARTAPVG-KAPFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKI 148 +T +L II+ I + +++I+ N + K + LR IAE Sbjct: 131 NTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAEN--------------- 175 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +S +A + + GD R + L +TE+ V Sbjct: 176 ------------EGVKVSDDALEAIYEFTQGDM---RKAINALQVAASVSREVTEEEVAK 220 Query: 209 IICDTHVLYIEEIINATIQGKIYNA-IMLADFFLASKMPSHALLHGFLQKFQLLE 262 + + E++ +G A + F + + ++ ++ L+ Sbjct: 221 ALGMVSPRLLREVLQEATKGSFNKALTQIYGFVVDGGVGELEIIRQLHREVLRLD 275 >gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 428 Score = 43.8 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium opportunistum WSM2075] Length = 597 Score = 43.8 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 49/156 (31%), Gaps = 3/156 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + L+ + S+ +A ++ G S + L + ++ + Sbjct: 192 DAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGSVSAEA 249 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + + + A+L + L+ ++ Sbjct: 250 VRAMLGLADRARIVDLFEHVMKGDVAAVLAEFRAQYDTGADPAAVLTDLAEFNHLVTRLR 309 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + + ++ + ++ R W Sbjct: 310 FVPTAMD-DASLSQDERQRGADFARALSVRVLSRTW 344 >gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987] gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987] Length = 428 Score = 43.8 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|22298675|ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus elongatus BP-1] Length = 603 Score = 43.8 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 46/167 (27%), Gaps = 13/167 (7%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 Q I EA ++ G + + L +LS Y IT + V + + Sbjct: 195 KEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLY---PERITVEQVWQLTGAVPEQDLR 251 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 +++ A + + + L +L ++ L + + ++ Sbjct: 252 QLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQRRDLVALTAE 311 Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 L E+ W+ + + ++ Sbjct: 312 T-------WQALIALAEA---WSVEEILHAQEHLRTCEGQIKQSNQP 348 >gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1] Length = 325 Score = 43.8 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 15/224 (6%) Query: 24 FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSL 79 +FYG G +I ++ Y + ++ LNA + I N ++ + Sbjct: 42 LLFYGPPGTGKTSTIIALARELYGKNYRN--MVLELNASDDRGIDVVRDQIKNFASTRQI 99 Query: 80 F-SKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNT-LRKIAEKFTS 136 F S K+I+++ L +I K N I +N K N L +F Sbjct: 100 FNSGFKLIILDEADAMSNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFR- 158 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 S D+ L D ++ + I+ +A+Q LL GD + N LQ ++ Sbjct: 159 ---FSPLADSA--LQDRVDYVIKAEGLKIASDARQSLLELSEGDMRRALNVLQACATAVE 213 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 IT+ V + + + +++A + +A Sbjct: 214 SGEEITQDMVYECVGAPRPQSVMTVLDAIMSNDWTDAYATMTKI 257 >gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus DSM 15470] Length = 638 Score = 43.8 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 32/223 (14%) Query: 56 VVLNALEIQKNISTFWNE-------INSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIK 107 ++ EI + +E + + + KK+ +I+ + K+ + L + + + Sbjct: 86 ASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNKKVYIIDEVHMLTKEAFNALLKTLEE 145 Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SC--YPDNKIHLMDLIEESLL---I 160 + + I+ E L I C Y ++I + D+ E L Sbjct: 146 PPAHVLFIL------------ATTEPAKIPLTILSRCQRYEFHRISVNDIKEHLLHISQE 193 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKL--SSYCLEDILITEQHVKDIICDTHVLYI 218 S++ EA ++ G R+ L L S ++ + V D++ T I Sbjct: 194 SHLSLTPEAAALIAVRAEG---GLRDALSLLDQCSGASAGNELSAEIVYDLLGLTDKEQI 250 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 ++ + + GK + L L A+L L+ F+ + Sbjct: 251 IDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSI 293 >gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames] gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne] gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Bacillus anthracis str. A2012] gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442] gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193] gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465] gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174] gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I] gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684] gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248] gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str. CNEVA-9066] gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055] gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western North America USA6153] gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger B] gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum] gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str. Australia 94] gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames] gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne] gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193] gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442] gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465] gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174] gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I] gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684] gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248] Length = 428 Score = 43.8 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|283852529|ref|ZP_06369797.1| DNA polymerase III delta [Desulfovibrio sp. FW1012B] gi|283572137|gb|EFC20129.1| DNA polymerase III delta [Desulfovibrio sp. FW1012B] Length = 328 Score = 43.8 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 39/323 (12%), Positives = 92/323 (28%), Gaps = 30/323 (9%) Query: 29 SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 D + E +++ F V E FW+ + SLF+ ++ +++ Sbjct: 12 PDPEITRERVDRLLAESGQ----QFVKEVFWGDEELSAP--FWSALTVGSLFAGQRAVVV 65 Query: 89 ENL-STEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRK---------IAEKFTS 136 + ++ L + + ++ +K + K +A K Sbjct: 66 RRAEACPAELWPKLTSALSGFNASVWPFFCLEGPFDRKGPKIPKALADQPYFKVAGKRKW 125 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 L + + + L+ + + + + L A L D + NEL KL Sbjct: 126 FLTVP--GLTRRDMGPLLADWAARRRLAFEPGVAEGLAAALPPDLARADNELAKLELALG 183 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGFL 255 E I + ++ + E ++A G + + G L Sbjct: 184 ERTTIERGDLAEVSYHEGMDG-FEFLDALAGGRDPASVWREIGGKQLAGEEMIFPFLGLL 242 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 ++ + I+ + + K+ L L + E + Sbjct: 243 --------LYEARIMWRIAAGEAGDVRLPPYVLQKKQALARRLGASGLTRLFEAAFAAEA 294 Query: 316 RIHLARKKKYLEKNIIFQTILYI 338 I ++ + + + Sbjct: 295 GIKSGTRRPDQAMEYLTAELFRL 317 >gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187] gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26] gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187] gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26] Length = 428 Score = 43.8 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKRFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W] gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99] gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W] gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99] Length = 428 Score = 43.8 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis CRIS 5C-B1] Length = 610 Score = 43.8 bits (102), Expect = 0.042, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 104/303 (34%), Gaps = 40/303 (13%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 +++ L+A +NI + ++ K K+ +I+ + + + + + Sbjct: 107 YNIFELDAASNNSVENIKSLMDQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPP 166 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + I I+ EK + I Y ++ D+I Sbjct: 167 AHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTTNDIINHLKKVAEKEG 214 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + EA I+ G + + + +S+C IT V + + I+ Sbjct: 215 ITYEDEALNIIAEKADGGMRDALSVFDQAASFC--QGNITYAKVTEDLNVLDTDNYFNIV 272 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 + +Q K+ +A++L + +A ++G + + + K+ + ++ Q+ Sbjct: 273 DLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVL---MAKDAQTLPLLEVSQQ- 328 Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQ 340 +R +E + + + L ++ R+ K L I T++ IAQ Sbjct: 329 -------QRQKYEEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEI---TLIQIAQ 378 Query: 341 TAC 343 Sbjct: 379 ITQ 381 >gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820] gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201] gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI] gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820] gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201] gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI] Length = 428 Score = 43.8 bits (102), Expect = 0.042, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum bv. viciae 3841] gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae 3841] Length = 625 Score = 43.8 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L ++ + Sbjct: 200 ASDLVGLFTTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + +L L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + +N +++T+ K + RIW Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKCVAVTTLSRIW 351 >gi|322368972|ref|ZP_08043539.1| replication factor C large subunit [Haladaptatus paucihalophilus DX253] gi|320551703|gb|EFW93350.1| replication factor C large subunit [Haladaptatus paucihalophilus DX253] Length = 488 Score = 43.8 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 58/164 (35%), Gaps = 17/164 (10%) Query: 80 FSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEK 133 + +++++++ ++ + +++ N +I+ +NE +N+LR E Sbjct: 96 TAGRRVVIMDEADNLTHNADRGGSRAITDVVKS--ANQPLILIANEFYDMSNSLRNACET 153 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I + ++ + + EA + + N GD R+ + L + Sbjct: 154 ------IEFRNVSARSIVPALRDICRQENIEYESEALEAIAENDSGD---LRSAVNDLQA 204 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 + +T V DT + + + + A+ + Sbjct: 205 VATTNGKLTRDDVVTGERDTTSGIFDFLDDLIKKQDAEGALKAS 248 >gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42] gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42] Length = 430 Score = 43.8 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|195867641|ref|ZP_03079643.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660698|gb|EDX53953.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 298 Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%) Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102 ++ + + +E SLF+ K I+ +L KK+ L ++ Sbjct: 6 KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 64 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159 ++I NHI II + E+ K +T +KI E KF + Y + +++ L Sbjct: 65 DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 122 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + K ++ + NEL KL + + + ICD I Sbjct: 123 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 182 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 ++N Q K I L + L K+ +++ + E Sbjct: 183 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 234 >gi|195869133|ref|ZP_02558438.3| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273664|ref|ZP_03206199.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554502|ref|YP_002284728.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|195659645|gb|EDX53025.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249692|gb|EDY74473.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542003|gb|ACI60232.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 305 Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%) Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102 ++ + + +E SLF+ K I+ +L KK+ L ++ Sbjct: 13 KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 71 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159 ++I NHI II + E+ K +T +KI E KF + Y + +++ L Sbjct: 72 DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 129 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + K ++ + NEL KL + + + ICD I Sbjct: 130 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 189 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 ++N Q K I L + L K+ +++ + E Sbjct: 190 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241 >gi|171920976|ref|ZP_02696329.2| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179152|ref|ZP_02555740.2| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024176|ref|ZP_02570330.2| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|189009913|ref|ZP_02556957.3| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225551639|ref|ZP_03772585.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903002|gb|EDT49291.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208934|gb|EDU05977.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018812|gb|EDU56852.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997860|gb|EDU66957.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225379454|gb|EEH01819.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 305 Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%) Query: 57 VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102 ++ + + +E SLF+ K I+ +L KK+ L ++ Sbjct: 13 KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 71 Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159 ++I NHI II + E+ K +T +KI E KF + Y + +++ L Sbjct: 72 DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 129 Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + K ++ + NEL KL + + + ICD I Sbjct: 130 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 189 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 ++N Q K I L + L K+ +++ + E Sbjct: 190 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241 >gi|326928025|ref|XP_003210185.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Meleagris gallopavo] Length = 1814 Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 69/255 (27%), Gaps = 38/255 (14%) Query: 88 IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 + + E L + ++ + K N R E Sbjct: 1479 LRRAAGEVAQLSHRVAEAKGKADEAWLQAQA-ALDKANQTRARVEHSNK---------EL 1528 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHV 206 L+ ++ L E+ +++ + L AS ++ +L+ Sbjct: 1529 RELISHVKAFLSQEG--ADPESIEVVASRVLELSLPASPAQIHRLA-------------- 1572 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++I L + I G + A L +K + + Q LE+ Sbjct: 1573 EEIKARVRSLASVDAILEQTAGDVRQAGQLLQDAQRAKARAEGVRGTAEAVQQALEEAR- 1631 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN-LVRETLHKI------DHRIHL 319 + + + + T +I +R I ++ + + +I + + Sbjct: 1632 ---QAQGTAGQALHSTAADIQHSERAIGTMQMQTLGAEQQLAAAMERIGLLEGQTDALKV 1688 Query: 320 ARKKKYLEKNIIFQT 334 R L Sbjct: 1689 KRANNSLAATRAHDA 1703 >gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al Hakam] gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108] gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102] gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108] gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102] Length = 426 Score = 43.8 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|303327270|ref|ZP_07357712.1| putative DNA polymerase III, delta subunit [Desulfovibrio sp. 3_1_syn3] gi|302863258|gb|EFL86190.1| putative DNA polymerase III, delta subunit [Desulfovibrio sp. 3_1_syn3] Length = 337 Score = 43.4 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 22/146 (15%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120 + FW +++ LF +++L+ V + + + + ++ N Sbjct: 53 EDPPPRFWEQLSLQGLFGASRVLLVRQAQLWPAAVWKKISQALARPSAQCWPFFCLEVNW 112 Query: 121 IKKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQKSISK 167 K + + + C + D + + +++ + Sbjct: 113 EKGQPKI------PAHIAKLRCLAFADRQGWIWRHEGLTERGVKRHVQQRARDLGLTFEA 166 Query: 168 EAKQILLANLGGDRIASRNELQKLSS 193 +A + A++ D A NELQKLS Sbjct: 167 DALEQFCASVPPDAQAIENELQKLSL 192 >gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus str. MIT 9211] Length = 578 Score = 43.4 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 L++ ++E + I KEA ++ G +++ L +LS IT V D Sbjct: 186 DLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLL---PQPITVNAVLD 242 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 ++ + + ++ A + N +++ + + +L G + L Sbjct: 243 LLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVL 297 >gi|289167662|ref|YP_003445931.1| DNA polymerase III, delta subunit [Streptococcus mitis B6] gi|288907229|emb|CBJ22064.1| DNA polymerase III, delta subunit [Streptococcus mitis B6] Length = 345 Score = 43.4 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 120/339 (35%), Gaps = 33/339 (9%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78 + +F G D+G + Q K I D F + + +++ E+ S Sbjct: 18 LILFTGIDQGQFEVMKGQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLP 70 Query: 79 LFSKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128 F+ +KI+++++ + +K+ L EE + ++I + ++ L Sbjct: 71 FFADEKIVILDHFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLV 130 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 K+ ++ + L ++ G + + + LL G +E+ Sbjct: 131 KLLKRD--AKVFDAVEAKEQELRQYFQKWSQKGGLQFANHSFENLLIKSG----FQFSEI 184 Query: 189 QKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 QK + D +I E+ + + I T I ++ + K+ A L Sbjct: 185 QKNLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGE 244 Query: 246 PSHALLHGFLQKFQLLEKIHIIKE---CSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302 L+ L +F+ ++ I+ + + + +N+ P + R + Sbjct: 245 DEIKLIAVMLGQFRTFTQVKILSDSGQTESQIASSLGSFLGRNLNPYQIKFALRDSRGLS 304 Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341 + +++ + + + + Y + + + +L IA Sbjct: 305 LSFLKQAISYLIETDYQIKTGLYEKGFLFEKALLQIASQ 343 >gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I] Length = 601 Score = 43.4 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + T Sbjct: 198 EPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 255 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 256 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDL 304 >gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter gallaeciensis 2.10] Length = 611 Score = 43.4 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+++ I+++A ++ G + + L + T Sbjct: 201 EPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 258 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++I+ ++G +A+ A A+L Sbjct: 259 VRAMLGLADRGRVLDLIDMILRGDAASALTELSAQYAEGADPLAVLRDL 307 >gi|15902717|ref|NP_358267.1| DNA polymerase III subunit delta [Streptococcus pneumoniae R6] gi|116515334|ref|YP_816160.1| DNA polymerase III subunit delta [Streptococcus pneumoniae D39] gi|149007645|ref|ZP_01831262.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP18-BS74] gi|168484830|ref|ZP_02709775.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC1873-00] gi|307127686|ref|YP_003879717.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 670-6B] gi|15458261|gb|AAK99477.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae R6] gi|116075910|gb|ABJ53630.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae D39] gi|147760800|gb|EDK67771.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP18-BS74] gi|172041989|gb|EDT50035.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae CDC1873-00] gi|301793923|emb|CBW36319.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae INV104] gi|306484748|gb|ADM91617.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae 670-6B] gi|332203918|gb|EGJ17985.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA47368] gi|332204773|gb|EGJ18838.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae GA47901] Length = 345 Score = 43.4 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+D+G + +Q K I D F + + +++ E+ S F Sbjct: 20 LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + + +II + ++ L K+ Sbjct: 73 ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNSSPTTKLIIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186 Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + + +I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter autotrophicus Py2] Length = 622 Score = 43.4 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 2/130 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + +I EA I+ G S + L + + + Sbjct: 223 EAGELAAHLAGICAKEGVTIEPEALAIVARAAEGSVRDSLSLLDQAI--AHGGGAVGAEE 280 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ A ++G++ A+ + +L + L+ ++ Sbjct: 281 VRRLLGLADKGRVIDLFEALMKGEMARALAEFRDQYDAGADPAVILTDLAEFTHLVTRLK 340 Query: 266 IIKECSNISF 275 I+ + + + Sbjct: 341 IMPDAAQDAA 350 >gi|314969354|gb|EFT13452.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA1] Length = 982 Score = 43.4 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E G +++ +++ GG S + L +L D ++ + + Sbjct: 314 LVEYLAELCGKGGIAVAPAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507 >gi|312875478|ref|ZP_07735481.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2053A-b] gi|325912889|ref|ZP_08175267.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 60-B] gi|311088989|gb|EFQ47430.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2053A-b] gi|325477882|gb|EGC81016.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 60-B] Length = 328 Score = 43.4 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I ++ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATLSESSLFSLQ 71 Query: 84 KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLM 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38] Length = 357 Score = 43.4 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 85/259 (32%), Gaps = 38/259 (14%) Query: 23 VFIFYGSDKGLIFELINQFKKNI-SITYHDP-----FSLVVLNALEIQ--KNISTFWNEI 74 +F G + I Y DP F++ L+A +I + +++ Sbjct: 41 ALLFTGPRGVGKTTCARILARKINQEGYDDPYEDFSFNVFELDAASNNGVDDIRSIIDQV 100 Query: 75 NSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 K K+ +I+ + + + + + + I I+ EK Sbjct: 101 RIPPQTGKYKVYIIDEVHMLSTSAFNAFLKTLEEPPKHAIFIL------------ATTEK 148 Query: 134 FTSVLAI--SCY---------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 + I C D K HL ++ E + +A I+ G Sbjct: 149 HKIIPTILSRCQIFDFKRITIKDAKNHLAEIANEQ----GVTFEDDALHIIAQKADGAMR 204 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 + + ++ SYC +T Q V + + Y I + ++ KI + ++ + L+ Sbjct: 205 DALSIFDRVVSYCG--KNLTRQAVTENLNVLDFEYYITITDLILENKIPDLLLAYNDILS 262 Query: 243 SKMPSHALLHGFLQKFQLL 261 H + G F+ L Sbjct: 263 KGFDGHHFIAGLASHFRDL 281 >gi|254444327|ref|ZP_05057803.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae bacterium DG1235] gi|198258635|gb|EDY82943.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae bacterium DG1235] Length = 297 Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%) Query: 151 MDLIEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 DLI E L + A + + G S++ L ++ ++C ITE V Sbjct: 98 EDLIRERLDLICKTEGIEADEAALKAVARLADGGMRDSQSILDQMIAFCGTK--ITEPDV 155 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 + +I+E+ A G + + L+D F AS + L + + Sbjct: 156 LQVYGLVSGEHIDELARAIATGDHPHLLELSDQFDASGQDFYRALVDLQSRVRQ 209 >gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122] gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122] Length = 424 Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|51891151|ref|YP_073842.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium thermophilum IAM 14863] Length = 570 Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 59/201 (29%), Gaps = 18/201 (8%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ + E S EA + + G + + L ++ +Y + IT Sbjct: 180 ADEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYA-AEGEITLDMT 238 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++ + + ++G + A++ D + + L+ +L + L + + Sbjct: 239 LAVLGTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKL 298 Query: 267 IKECSNIS-FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + +++ + L + + R Sbjct: 299 EAGAQVLGLPAEALEQMRA----RAEPFAERQL--------IRAIRLLGQAETELRLSPS 346 Query: 326 L----EKNIIFQTILYIAQTA 342 E +I T L+ A Sbjct: 347 PRLLVEVALIRLTGLFTGAAA 367 >gi|93005394|ref|YP_579831.1| DNA polymerase III, delta subunit [Psychrobacter cryohalolentis K5] gi|92393072|gb|ABE74347.1| DNA polymerase III, delta subunit [Psychrobacter cryohalolentis K5] Length = 358 Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 97/298 (32%), Gaps = 36/298 (12%) Query: 7 HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 FIQ K S V ++ +G + L LI+ + + +++ + + + Sbjct: 3 DTFIQAYPKLQRSSVAVAGLWLAHGDEPLLSQWLIDALRPHWRAQN---YAIKRIELISV 59 Query: 64 QKNISTFWNEINSTSLFSK-KKIILIENLSTEKKVLDCLEEIIIKNICNHI---IIIKSN 119 + E+ S SLF +I+ N +K V+ LE ++ + Sbjct: 60 KSWQEVLS-ELGSQSLFDDASALIVTGNHKPDKAVITELERFAQDAQAGSHSHSLLWLTP 118 Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 + K K I C N+ L++ +S+EA Q+L+++ Sbjct: 119 KQDKRAQSSKWFTPFAQYGHVIDCNLYNEQQRQQLLQIQAQQFGLKLSQEAWQLLMSHTE 178 Query: 179 GDRIASRNELQKLS------SYCLEDILI---------------TEQHVKDIICDTHVLY 217 +++ L +LS D I ++ + Sbjct: 179 HHLLSAYQTLWRLSYLFAPQLMANNDAAIQETTNSSPHLSQVALDINDLQAALVSDAQFS 238 Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 + ++ +A + G + A+ P+ +L + + + ++ + + Sbjct: 239 VFDLSDAMLAGNSAQVAKIIFQLKATDEPTTLVLWAISKDMRQIMQL---MDGQDPQA 293 >gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4] Length = 631 Score = 43.4 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 4/138 (2%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L L EA ++ G ++R+ L L + Sbjct: 203 AGDLVGLFSTILSKENIEAEDEALAMIARAAEG---SARDGLSLLDQAIAHGAGRVEADA 259 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ + G + A+ + + +L L+ ++ Sbjct: 260 VRSMLGLADRARVVDLFGHIVLGDVAAALSEFNSQYEAGASPSVVLTDLADFTHLVTRLK 319 Query: 266 IIKECSNISFEKIIQKTE 283 + +N +++ Sbjct: 320 YVPNGANDPSLSEVERVR 337 >gi|217969820|ref|YP_002355054.1| DNA polymerase III subunits gamma/tau [Thauera sp. MZ1T] gi|217507147|gb|ACK54158.1| DNA polymerase III, subunits gamma and tau [Thauera sp. MZ1T] Length = 716 Score = 43.4 bits (101), Expect = 0.058, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 2/120 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 H++D + L + + A + L G + + L + + E+ V Sbjct: 181 GHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAI--AHGAGRVEEEQVS 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ ++ +++A G + + +AD A + A L + Sbjct: 239 HMLGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQALATLVHRVALAQYA 298 >gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 480 Score = 43.0 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 73/182 (40%), Gaps = 29/182 (15%) Query: 21 HFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEI 74 + YG L+ + N+FK + L+ +NA + + +I Sbjct: 44 RKALLLYGPPGCGKTSLVEAIANEFK----------YELIEMNASDFRRRSDIERIAIRA 93 Query: 75 NST-SLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127 +S S+F K + I++ + ++ ++ +++++ K + +I+ +N + +L Sbjct: 94 SSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEK--TSVPVIMTANN-PYDPSL 150 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + E + +K + ++ + +EA ++ GD A+ N+ Sbjct: 151 RVLRE---IAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAIND 207 Query: 188 LQ 189 LQ Sbjct: 208 LQ 209 >gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035] Length = 588 Score = 43.0 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 42/138 (30%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ I+ +A ++ G + + L + T Sbjct: 190 EPEVMIALLRRIADREGAQITDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ + ++G A+ A A+L + + + Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDLAEITHWISVVK 307 Query: 266 IIKECSNISFEKIIQKTE 283 I + +N ++ Sbjct: 308 ITPDAANDPTIGPDERAR 325 >gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis serovar sotto str. T04001] Length = 420 Score = 43.0 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +I+ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 159 EKGLGEYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 218 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335 Query: 320 AR 321 R Sbjct: 336 LR 337 >gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1] gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1] Length = 599 Score = 43.0 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 18/187 (9%), Positives = 64/187 (34%), Gaps = 9/187 (4%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155 + L + + + + + I+ + E+ K + + + Sbjct: 134 AAFNALLKTLEEPPPHALFILATTEVHKVPAT-----ILSRCQRFVFNRHTVASIAAHLR 188 Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 ++ + + G + + L +L +Y I+ + V++++ + Sbjct: 189 SIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAY--GGGTISLEQVRNLLGAGEM 246 Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NI 273 + + +A I G + A+ + A+ +++ + + + + S ++ Sbjct: 247 QEVTALADALIAGDLPGALQVIANVAAAGADLRQFTRDLVERLRAVMLLRAGADRSLLDV 306 Query: 274 SFEKIIQ 280 + E+ +Q Sbjct: 307 AEEEAVQ 313 >gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA polymerase) [Rhizobium etli CIAT 652] Length = 623 Score = 43.0 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 4/138 (2%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L ++ + Sbjct: 200 ASDLVGLFTTIAAKEGIEAEADALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + +L L+ ++ Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAGALAEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTE 283 + + +N I++T+ Sbjct: 317 YVPDAANDPSLSEIERTK 334 >gi|284165192|ref|YP_003403471.1| ATPase AAA [Haloterrigena turkmenica DSM 5511] gi|284014847|gb|ADB60798.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM 5511] Length = 497 Score = 43.0 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 19/208 (9%) Query: 39 NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSLFSK---KKIILIENLSTE 94 ++ P + + I E + S +L +++++++ Sbjct: 50 TSAAHALAGDMGWPVMELNASDSRGADVIERIAGEASKSGTLTGGEAGRRLVILDEADNF 109 Query: 95 KKVLD---CLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 D E + N I++ +NE + +LR E I +K + Sbjct: 110 HGNADYGGSAEVTRVVKDANQPIVLVANEFYDMSQSLRNSCET------IEFRDVSKRSI 163 Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 + ++ + +EA + + + GD R+ + L + E +T + V Sbjct: 164 VPVLRDICRREDVEFEEEALEKIAEDTSGD---LRSAVNDLQAVAEEAERLTVEDVVTGQ 220 Query: 211 CDTHVLYIEEIINATI-QGKIYNAIMLA 237 DT I + ++A I + A+ + Sbjct: 221 RDTTE-GIFDFLDALIKEEDAEGALRAS 247 >gi|294791539|ref|ZP_06756696.1| putative DNA polymerase III, delta subunit [Scardovia inopinata F0304] gi|294458010|gb|EFG26364.1| putative DNA polymerase III, delta subunit [Scardovia inopinata F0304] Length = 339 Score = 43.0 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 116/339 (34%), Gaps = 32/339 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 FV I G D L + + + K ++ ++ L+A +++ S SL S Sbjct: 19 FVHIVSGEDDYLSGQRVQEL-KTVAFRTLPEAEIIELDAATCTAFD---FDQAVSPSLLS 74 Query: 82 KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136 I+L+ + +++ + ++ I+I++ N K + + K A+K + Sbjct: 75 DASIVLMSHGENMDEEVGTALVEYCQRFRKESNPVSIVIVRHNGSTKGSGIIKRAQKAGA 134 Query: 137 VLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 VL D L + ++ I+ +A Q+++ L ++ Sbjct: 135 VL------DPIESLKKPDSRKNFVLHCCEKRKRRITPDAAQLIVDVLTDKTGEIAALCEQ 188 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L I+ V+ + + + + I G + A++ LA + A+ Sbjct: 189 LCD-DFPQDPISRNQVETYLSADPRVTGFNVADRAISGNVAQAVLGLRSALAQGVDPLAI 247 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + KI + + S + I + RN ++ +R W +R+ + Sbjct: 248 IGAIA------MKIRAMAKASAVDRGTITPAEARMAPWQLRNA-RKDVRGWTSQGLRKCI 300 Query: 311 HKIDHRIHLARKK---KYLEKNIIFQTILYIAQTACKNN 346 + I+ +T+ + + + Sbjct: 301 QTAAWADEQCKSSGTDPLYAMEILVETLAKKGRISASDR 339 >gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM 12614] Length = 640 Score = 43.0 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 4/139 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204 ++ L+ L+ IS EA +L+A G ++R+ L L I + Sbjct: 218 DQSKLIGLLRRISDAEGIQISDEAL-MLIARAGE--GSARDSLSLLDQAMAHGAGAIEAE 274 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 ++ ++ + ++ + G+I +A+ +L L+ ++ Sbjct: 275 DLRQMLGLADRARVIDLFGHIMAGRIEDALGELQAQYEVGADPAIVLTDLADFTHLVTRM 334 Query: 265 HIIKECSNISFEKIIQKTE 283 + + ++ + ++ Sbjct: 335 KVAPKSADEASVTEAERAR 353 >gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 509 Score = 43.0 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 78/183 (42%), Gaps = 18/183 (9%) Query: 53 FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104 F ++ LNA + + + + + S+S+F KK +I+++ + + + L +I Sbjct: 65 FEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSELIKI 124 Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 I K + II+ +N+ + +R + V I P + + ++++ Sbjct: 125 IKK--AKNPIILTANDAYATS-IRSLL---PYVEIIQLNPVHTNSIYKVLKKIAQKEGLD 178 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + + +++ + GD ++ N+L+ L+ ++ + V+ + I + + Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYETVQKLPDRKREANIFDALRV 234 Query: 225 TIQ 227 ++ Sbjct: 235 ILK 237 >gi|256827873|ref|YP_003156601.1| DNA polymerase III, delta [Desulfomicrobium baculatum DSM 4028] gi|256577049|gb|ACU88185.1| DNA polymerase III, delta [Desulfomicrobium baculatum DSM 4028] Length = 317 Score = 43.0 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + ++ + + K+IL +L IA RNEL+K+ + I +H+ Sbjct: 133 ATIGQELDRFAARHGLTYAHGVKKILAESLPLSTIALRNELEKILLLAGPEKSIQPEHLA 192 Query: 208 DIICDTHVLYIEEIINA--TIQGKIYNAIMLA-DFFLASKMPSHALLHGFLQKFQLLEKI 264 + + + + + T G+ L D +A + L++ + L ++ Sbjct: 193 ALDAEE-AFDLFAFLRSLQTPAGRQKAWDRLLNDPAMAGGDMVFPVSSLMLREARQLWQL 251 Query: 265 HIIKECS 271 ++ Sbjct: 252 LHGEDGK 258 >gi|315635660|ref|ZP_07890923.1| DNA polymerase III [Arcobacter butzleri JV22] gi|315479957|gb|EFU70627.1| DNA polymerase III [Arcobacter butzleri JV22] Length = 326 Score = 43.0 bits (100), Expect = 0.070, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 104/323 (32%), Gaps = 25/323 (7%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 ++FYG L+ + + + L E + +++ +SLF Sbjct: 16 FKTYMFYGQSTFLVEQYSLSIARMFGQDD----EIEKLYFEEYDFKYAK--DKLLQSSLF 69 Query: 81 SKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----T 135 S I+ I+ K LD L E N + ++I + + K E T Sbjct: 70 SSNNILFIKIDKKIPKKELDVLIEACNANPDSTLVIACMGD----SDF-KTMETSFSLKT 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + + +E + Q A L D N+L+KL+ Sbjct: 125 NSACVRFFQPTDLEATKFLEYEAKMLQIQYEVSALNHLYFMHKNDLALCVNDLKKLAIL- 183 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D LIT V + E+ + + GK ++ L M LL Sbjct: 184 --DELITINIVDTHCFGIGSVNFEDFLYDLLAGKDISSD--LSSILEEGMNEVFLLTQVT 239 Query: 256 QKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 Q L I + + ++I+ I K++ L +++ + + L + Sbjct: 240 SFIQQLFMISSYARTLGQPNPKEILGYIPPKNIWEKKSKLAINIK---PEVFQNMLEYLL 296 Query: 315 HRIHLARKKKYLEKNIIFQTILY 337 + K +N+ Q L Sbjct: 297 DIELDFKTSKVENQNLYLQATLR 319 >gi|296438351|gb|ADH20504.1| hypothetical protein E11023_00250 [Chlamydia trachomatis E/11023] Length = 314 Score = 43.0 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + I ++ + + + ++ +A ++ A L F ++ Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRFLVSDMG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 A+L+ ++ L + + E S +I + Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280 >gi|218888172|ref|YP_002437493.1| hypothetical protein DvMF_3088 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759126|gb|ACL10025.1| conserved hypothetical protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 383 Score = 43.0 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 90/296 (30%), Gaps = 37/296 (12%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTE-----KKVLDCLEEIIIKNICNHIIIIKSNEI 121 FW + LF+ + +++ N K++ L + + + ++ Sbjct: 69 PPAFWEHLTLQGLFATPRALVVRNAQNLPAETWKRISAALAK--PNPLAWPFLCLEVPFD 126 Query: 122 KKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQKSISKE 168 K + + + C + D ++ + + + + Sbjct: 127 KGQPKV------PAHIAKLRCLDFADSQKWIWRSPGLDERGVATFVRQHAASRAIRFAPG 180 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A + + A L D A EL+KLS D +T + ++ + I + A G Sbjct: 181 ALEAVCAALPPDATAIATELEKLSL-AAGDGEVTPA-MAALVDHAADIDIFAFMRALQAG 238 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + + L ++ ++L FL LL + I+ + ++ Sbjct: 239 NAP--MTVWRQVLRDRLGGDSMLFPFLG--MLLRETRILWQLLAGEPVRLPPSVLPP--- 291 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 + L L + + + + I + ++ + + + + Sbjct: 292 --KQQLARQLGHAGLARIWDLALEAELGIKSGERSPEQAMEMLVAGLFTLFARSRR 345 >gi|222097843|ref|YP_002531900.1| ATPase, AAA family [Bacillus cereus Q1] gi|221241901|gb|ACM14611.1| ATPase, AAA family [Bacillus cereus Q1] Length = 340 Score = 43.0 bits (100), Expect = 0.073, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 79 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 138 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 139 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 195 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 196 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 255 Query: 320 AR 321 R Sbjct: 256 LR 257 >gi|329921322|ref|ZP_08277760.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 1401G] gi|328934614|gb|EGG31118.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 1401G] Length = 328 Score = 43.0 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I ++ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATLSESSLFSLQ 71 Query: 84 KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus JKD6159] Length = 424 Score = 43.0 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDEEKGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|315653474|ref|ZP_07906395.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners ATCC 55195] gi|315489165|gb|EFU78806.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners ATCC 55195] Length = 328 Score = 43.0 bits (100), Expect = 0.076, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I I+ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71 Query: 84 KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLM 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|296130068|ref|YP_003637318.1| DNA polymerase III, delta subunit [Cellulomonas flavigena DSM 20109] gi|296021883|gb|ADG75119.1| DNA polymerase III, delta subunit [Cellulomonas flavigena DSM 20109] Length = 310 Score = 43.0 bits (100), Expect = 0.076, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 101/308 (32%), Gaps = 20/308 (6%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN--LS 92 E I + + ++A T + S SLF++ K++L+E + Sbjct: 15 CERIVAQARAADPDL----EVTRVDAATYAAGDLTV---LTSPSLFAEAKVVLVEGVERA 67 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLM 151 + +LD + + +++ + + L K V ++C P + Sbjct: 68 GDALLLDAEAYLTAPDPGVVVVLRHAGGQRGKRLLDAA--KRAQVPTVACEPVKSDADKA 125 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 + E L + A + L+ +G D +L LI E+ V+ Sbjct: 126 AFVSEELTRAGRRADARAVRALVDAVGSDLRELAAACAQLV--ADTTGLIGEEAVQRYHG 183 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 ++ +A + G A+ L LA+ + ++ ++ + + Sbjct: 184 GRVEATGFQVADAAVAGDAGRAVALLRHALATGLDPVPIVAAVAA------RLRTLAKVG 237 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNII 331 + E + P + + + LR W + + + + + + I Sbjct: 238 AVRGRGAAAARELGMAPWQVDRATQDLRRWTPEGLAVAISAVAQADAEVKGEGRDPRFAI 297 Query: 332 FQTILYIA 339 + +L +A Sbjct: 298 ERAVLRVA 305 >gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] Length = 422 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + +++++ + ++A + L + GD R + L + +T + Sbjct: 178 EDDVVEVLRRICDSEKIKCEEDALRALARSSDGD---LRAAINDLQLFAGGKKTLTVDDI 234 Query: 207 KDIICDTHVLYIEEIINATIQGK 229 K + L + E+++ + Sbjct: 235 KRVGERNPQLSMFEVLDRVFRAN 257 >gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3] Length = 633 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 69/204 (33%), Gaps = 9/204 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ + + + + +A ++ G + + L + +Y + + Sbjct: 194 EATVLLTHLRQIAQLEKVEAQDQALFMIAHAAEGSVRDALSILDQAIAY--GNGKVDAIA 251 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ T I ++ + ++G I NA+ + A+L L+ ++ Sbjct: 252 VRVMLGLTDQSRIIDLFESIMKGNIVNALYELRNQYNAGADPFAILTELADFNHLITRLR 311 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319 + E +++ ++ ++ ++ R W V + H I + L Sbjct: 312 LTPEIIESLSLTEEERSR-SLNFSQKLSIRVLSRSWQMLLKGLQEVSQASHPIQAAEMLL 370 Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343 R + + + + + Q Sbjct: 371 IRLAHVADLPTLDEALTKLTQNKK 394 >gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590] gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590] Length = 422 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 24/185 (12%) Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L + E+ V + D+ L I ++A + GD ++ N Sbjct: 148 LYPLNEEDIKVALMRAIEDDSRGLASY--------HPHIDEDAIEYFSTQSQGDVRSALN 199 Query: 187 ELQKLSSYC---LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233 L+ + +T +D + D H + + + A Sbjct: 200 ALELAVLSADEDNGERHVTLTDAQDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAA 259 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + +A+ + + + E I + + IQ E+ P R Sbjct: 260 LHYLARLIAAGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIQAAERLGFPEARIP 316 Query: 294 LQESL 298 L +++ Sbjct: 317 LSQAV 321 >gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84] gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84] Length = 625 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L EA ++ G ++R+ L L ++ Sbjct: 200 ASDLVGLFTTIAGKEGIEAEPEALAMIARAAEG---SARDGLSLLDQAIAHGSGVVVADA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ + I+G + A+ + + +L L+ ++ Sbjct: 257 VRSMLGLADRARIVDLFHHIIKGDVAAALAEFNSQYEAGANPVVVLADLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + +N +++ + + + RIW Sbjct: 317 YVPDAANDPSLSEVERNKAA-EFAQGVAVTTLSRIW 351 >gi|269837957|ref|YP_003320185.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter thermophilus DSM 20745] Length = 589 Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 40/121 (33%), Gaps = 3/121 (2%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLEDILITEQH 205 +++ + EA +++ G + L++L+ + ++IT Sbjct: 197 DVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKLVITADA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ + + + +++A + + + S H L + + L I Sbjct: 257 VRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLRTLLLIR 316 Query: 266 I 266 Sbjct: 317 A 317 >gi|229105033|ref|ZP_04235687.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28] gi|228678410|gb|EEL32633.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28] Length = 428 Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|184199929|ref|YP_001854136.1| DNA polymerase III tau subunit [Kocuria rhizophila DC2201] gi|183580159|dbj|BAG28630.1| DNA polymerase III gamma/tau subunit [Kocuria rhizophila DC2201] Length = 1264 Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 84/242 (34%), Gaps = 17/242 (7%) Query: 35 FELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSKKKIILIENLST 93 E ++ + + ++ ++A + + E + + + I I + + Sbjct: 75 CESCRDLARDGAGSLD----VIEMDAASHGGVDHARDLRERATFAPVRDRYKIFIIDEAH 130 Query: 94 --EKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTSVLAISCYPDNKIHL 150 ++ + L +I+ + + I + E K T+R + L L Sbjct: 131 MVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTHHYPFRLVPP------EPL 184 Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDI 209 M +E+ S +++ GG S + L +L D I+ + Sbjct: 185 MRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQL--MAGSDERGISYDLAVAL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + TH ++++++A G D + + + L++F+ L ++ + + Sbjct: 243 LGYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRFVEDLLERFRDLVVVNAVPD 302 Query: 270 CS 271 + Sbjct: 303 SA 304 >gi|303245836|ref|ZP_07332118.1| DNA polymerase III delta [Desulfovibrio fructosovorans JJ] gi|302492619|gb|EFL52487.1| DNA polymerase III delta [Desulfovibrio fructosovorans JJ] Length = 330 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 39/333 (11%), Positives = 98/333 (29%), Gaps = 32/333 (9%) Query: 29 SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 D +I + +++ F V E + FW+ + SLFS ++ +++ Sbjct: 12 PDPEIIRDRVDRLLAEQGSG----FDKAVFWGDEELGDP--FWSALTVASLFSGRRALVL 65 Query: 89 ENLSTEKKVLDCLEEIIIKNICNH---IIIIKS------NEIKKNNTLR---KIAEKFTS 136 ++ + ++ + K + K+AEK Sbjct: 66 RRAEACPAEFWPKLAAALRGFNDAVWPFFCLEGAFDRKGPKYPKGLATQPYFKVAEKRGW 125 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + L+ + + + + L A L D + NEL KL Sbjct: 126 LFVSP--GLTRRDMGPLLADWAGGRKLAFEPGVAEALAAALPLDLARADNELAKLELTLG 183 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI--MLADFFLASKMPSHALLHGF 254 + ++T ++ + ++A G+ A+ + + LA + L Sbjct: 184 DRSVLTMDDA-ALVGGHEGMDGFAFLDALASGRDPAAVWREIGEKQLAGEDMVFPFLGLL 242 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314 L + + I+ + + + K+ + L + E + Sbjct: 243 L---------YEARIMWRIAAGEAGDVRLPSFVMQKKQAMARRLGAAGLTRIFEAAFAAE 293 Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347 I ++ + + + + Sbjct: 294 SGIKSGARRPDQAMEYLTAELFRLFGGNARQTR 326 >gi|229013617|ref|ZP_04170748.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048] gi|228747676|gb|EEL97548.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048] Length = 428 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|229135222|ref|ZP_04264021.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196] gi|229169142|ref|ZP_04296857.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621] gi|228614370|gb|EEK71480.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621] gi|228648264|gb|EEL04300.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196] Length = 428 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAVEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|225550964|ref|ZP_03771913.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380118|gb|EEH02480.1| DNA polymerase III, delta subunit superfamily [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 305 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 9/223 (4%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--LDCLEEIIIKNICN 111 LV ++ +I E + LF+ KKI L +N++ + + L ++++I N Sbjct: 23 ELVKIDDQQISLFAFKSIVEQS--DLFNAKKIYLFKNVNWFESLEQLKNVQDLIDYFFSN 80 Query: 112 HIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 HI II + E+ K +T +KI E KF + Y + +++ L + K Sbjct: 81 HIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELNERHLHLDKL 138 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 ++ + NEL KL + + + ICD I ++N Q Sbjct: 139 IVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIFSLLNLLYQQ 198 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 K I L + L K+ +++ + E Sbjct: 199 KTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241 >gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-134-V-Col7a] Length = 804 Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 101/303 (33%), Gaps = 28/303 (9%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLSTEKKVL-DCLEEIIIKNI 109 ++ LEI + +EI + + +KK+ +I+ + L + I + Sbjct: 88 MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + ++ ++ Sbjct: 148 DHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLQYVADKEGFALEDN 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A +++ + G + + L + IT V+++I +I + ++A G Sbjct: 202 AARLIAVHADGGLRDALSILDQCVGMA--SGEITPAVVEELIGLVSKDWIIKFLSALHNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + L+ ++ Q + L + + + Sbjct: 260 DGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEELKVYDSF--------- 310 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 + L+++ + + + + ++ + A++ I ++ A + +++ Sbjct: 311 -RTEFLEQA-KDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVLCAGVSKAHDDV 368 Query: 349 YKR 351 R Sbjct: 369 EDR 371 >gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter lacuscaerulensis ITI-1157] Length = 584 Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + IS +A ++ G + + L + T Sbjct: 190 EPEVMIGLLRKIATAEGAEISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLMDMILRGDAAGALTELGAQYAEGADPLAVLRDL 296 >gi|307704569|ref|ZP_07641474.1| DNA polymerase III, delta subunit [Streptococcus mitis SK597] gi|307621866|gb|EFO00898.1| DNA polymerase III, delta subunit [Streptococcus mitis SK597] Length = 345 Score = 42.7 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 100/276 (36%), Gaps = 31/276 (11%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80 +F G+++G + +Q + I D F + + +++ E+ S F Sbjct: 20 LFTGTNQGQFEVMKSQVLRQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72 Query: 81 SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130 + +KI++++ +++T KK L EE + ++I + ++ L K+ Sbjct: 73 ADEKIVILDHFVDMTTSKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ + L ++ + + + LL G +E+QK Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLVKSG----FQFSEIQK 186 Query: 191 --LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L ++ I E+ + + I T I ++ + K+ A L Sbjct: 187 NLLFLQSYKEGSIIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L+ L +F+ ++ I+ E S + +I Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281 >gi|220934248|ref|YP_002513147.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] gi|219995558|gb|ACL72160.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp. HL-EbGR7] Length = 553 Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 44/137 (32%), Gaps = 7/137 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 +++ L A L G + + L + +Y + + V++++ Sbjct: 187 LKKVLEQEGVDFDPPAIMRLARAASGSMRDALSLLDQAIAY--GSGALRDDDVREMLGAI 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE---- 269 ++E ++ A G + D +A+L + + + E Sbjct: 245 SQDHLERMLQALAAGDGPALMGAVDDLAQRAPDYNAILGELVSLLHQVALAQQVPEALDE 304 Query: 270 -CSNISFEKIIQKTEKN 285 +++ + + ++ Sbjct: 305 GAVDVAAVQAMARSLAP 321 >gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3] gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi DSS-3] Length = 583 Score = 42.7 bits (99), Expect = 0.086, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 37/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ I+++A +++ G + + L + + + Sbjct: 190 EPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAI--SHGAGETSAEQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDL 296 >gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] Length = 422 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 24/185 (12%) Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 L + E+ V + D+ L I ++A + GD ++ N Sbjct: 148 LYPLNEEDIKVALMRAIEDDSRGLASY--------HPHIDEDAIEYFSTQSQGDVRSALN 199 Query: 187 ELQKLSSYC---LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233 L+ + +T +D + D H + + + A Sbjct: 200 ALELAVLSADEDNGERHVTLTDAQDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAA 259 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + +A+ + + + E I + + IQ E+ P R Sbjct: 260 LHYLARLIAAGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIQAAERLGFPEARIP 316 Query: 294 LQESL 298 L +++ Sbjct: 317 LSQAV 321 >gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099] gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099] Length = 514 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 21/209 (10%) Query: 39 NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSLFSK---KKIILIENLSTE 94 ++ P + + I E S +L +++++++ Sbjct: 51 TSAAHALANDLGWPVMELNASDSRGADVIERIAGEAAKSGTLTGGESGRRLVILDEADNF 110 Query: 95 KKVLD-----CLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTSVLAISCYPDNKI 148 D + ++ N I++ +NE + +LR E I +K Sbjct: 111 HGNADYGGSREVTRVVKS--ANQPIVLVANEFYDMSQSLRNACET------IEFRDVSKR 162 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ ++ + +A Q + + GD R+ + L + E +T V Sbjct: 163 SIVPVLRDICRREDIEFEDDALQKIAEDTSGD---LRSAVNDLQAVAEEAERLTVDDVVT 219 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLA 237 DT + + + A+ + Sbjct: 220 GDRDTTEGIFDFLDTLIKEEDAEGALKAS 248 >gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia alexandrii DFL-11] Length = 654 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 62/172 (36%), Gaps = 7/172 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204 ++ L+ L+ IS EA +L+A G ++R+ L L I Sbjct: 223 DQSKLIGLLRRISDAEGIQISDEAL-MLIARAGE--GSARDSLSLLDQAMAHGSGAIEAD 279 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 ++ ++ + ++ + G+I +A+ +L L+ ++ Sbjct: 280 DLRQMLGLADRARVIDLFGHLMAGRIEDALAELQAQYEIGADPAIILTDLADFTHLVTRM 339 Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + ++ + ++ ++ ++ R+W ++ + + ++ Sbjct: 340 KVAPKSADEASVTEAERAR-GQEFAEKISVRLLSRVW--QILLKGVQEVQAA 388 >gi|218899568|ref|YP_002447979.1| ATPase, AAA family [Bacillus cereus G9842] gi|228902927|ref|ZP_04067068.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL 4222] gi|218540581|gb|ACK92975.1| ATPase, AAA family [Bacillus cereus G9842] gi|228856711|gb|EEN01230.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL 4222] Length = 428 Score = 42.7 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +I+ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|228999186|ref|ZP_04158768.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17] gi|229006734|ref|ZP_04164368.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4] gi|228754595|gb|EEM04006.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4] gi|228760803|gb|EEM09767.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17] Length = 428 Score = 42.7 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA + GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYHVTVTDEAMRHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|229019621|ref|ZP_04176433.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273] gi|229025861|ref|ZP_04182257.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272] gi|228735413|gb|EEL86012.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272] gi|228741669|gb|EEL91857.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273] Length = 428 Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 28/187 (14%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTNEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + + Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD--------LQSIGRR 278 Query: 261 LEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314 L + + I+ E+ P R + + + +D Sbjct: 279 LLIMAYEDVGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 338 Query: 315 HRIHLAR 321 +H R Sbjct: 339 AALHDLR 345 >gi|229062094|ref|ZP_04199419.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603] gi|228717246|gb|EEL68921.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603] Length = 428 Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|163942149|ref|YP_001647033.1| recombination factor protein RarA [Bacillus weihenstephanensis KBAB4] gi|163864346|gb|ABY45405.1| AAA ATPase central domain protein [Bacillus weihenstephanensis KBAB4] Length = 428 Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193] Length = 608 Score = 42.7 bits (99), Expect = 0.091, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+++A ++ G + + L + T Sbjct: 194 EPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLLDQAI--SHGAGETTADQ 251 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 252 VRAMLGLADRGRVLDLMDMVLRGDAAGALTELSAQYAEGADPLAVLRDL 300 >gi|325066429|ref|ZP_08125102.1| DNA polymerase III, delta subunit [Actinomyces oris K20] Length = 209 Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 10/157 (6%) Query: 54 SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111 + L A + + + S SLF + +++ + L T+ + D + + + Sbjct: 46 EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVGAADPEV 102 Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170 +I+ + + L I K + I C + L+ + + I+ EA Sbjct: 103 SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAVKSAKDKSSLVVADVRRAGRRIAPEAV 160 Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L+ LG D + + +L IT HV+ Sbjct: 161 GALVDALGSDLRELCSAVDQLL--ADTQGTITVDHVR 195 >gi|33152250|ref|NP_873603.1| DNA polymerase III subunit delta [Haemophilus ducreyi 35000HP] gi|33148472|gb|AAP95992.1| DNA polymerase III delta subunit [Haemophilus ducreyi 35000HP] Length = 341 Score = 42.7 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 94/265 (35%), Gaps = 15/265 (5%) Query: 68 STFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNICNHIIII-KSNEIK 122 + + + LF ++II++ + + + L +I ++ + + S ++ Sbjct: 62 EQLFESVQNFGLFFSRQIIILNLPENPTTAQMNHIAKLAGLINADLMLILCLTKFSKAME 121 Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 K ++ ++ +SC + L + + + E Q+L + G+ I Sbjct: 122 KQAWFTQM---DAKLVQVSCQTPDINRLPIWLANRAKMMGLQLEVEVVQLLAYSYEGNLI 178 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A + LQ+L + IT K+II + I+A ++GKI AI + + Sbjct: 179 ALQQTLQQLQLRTHD-GKITLPQAKEIIEQFAQFTPFQWIDALLEGKIARAIRILKYLKD 237 Query: 243 SKMPSHALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQE 296 ++ LL ++ LLE + I +R Q Sbjct: 238 EEIQVVMLLRIVQKELLILLEITRSPAAILTSQQALYVGNLRAEFDRLKIWQNRRPFYQS 297 Query: 297 SLRIWNKNLVRETLHKIDHRIHLAR 321 +++ + + + ++ + Sbjct: 298 AIQRLSYKKLYLLIQQLAELEKQTK 322 >gi|195387339|ref|XP_002052353.1| GJ22160 [Drosophila virilis] gi|194148810|gb|EDW64508.1| GJ22160 [Drosophila virilis] Length = 1942 Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 24/223 (10%) Query: 132 EKFTSVLAISCYPDN-KIHLMDLIEESLLIGQKSIS---KEAKQILLANLGG---DRIAS 184 E C D+ + ++ I E+ + IS E+ L LG R + Sbjct: 1218 ESAPQADTDGC--DSLQASVISRISEAKALQNNRISEMSAESLVWLSHRLGPVLTARHIT 1275 Query: 185 RNELQKLSS-YCLEDI---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RN L+ LS Y ++ + + D+ D L I NA + G +A + + Sbjct: 1276 RNLLKLLSLCYVGQENLLPEVETGNCGDLSADASNLNYFSIANARVVGD-RSAARVLECL 1334 Query: 241 LASKM--PSHALLHGFLQKFQLL-----EKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 ++ + LL + L +++ E + IS ++++ ++ Sbjct: 1335 MSIAALYGENFLLLQYFPHISELIGLCSKRMTGSLEGAIISSLQLVKYMLPCLM---DAT 1391 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + E L+ + + + ++ +L YL ++++ + L Sbjct: 1392 IMEHLQHMLLDAILLPILRLLSSTNLLMPSGYLGRSLLARKFL 1434 >gi|45383784|ref|NP_989497.1| laminin subunit beta-2 [Gallus gallus] gi|2708707|gb|AAB92586.1| laminin beta 2-like chain [Gallus gallus] Length = 1792 Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 46/259 (17%) Query: 88 IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 + + E L + ++ + K N R E Sbjct: 1457 LRRAAGEVAQLSHRVAEAKGKADEARLQAQA-ALDKANQTRARVEHSNK---------EL 1506 Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHV 206 L+ ++ L E+ +++ + L AS ++ +L+ Sbjct: 1507 RELISHVKAFLSQEG--ADPESIEVVASRVLELSLPASPAQIHRLA-------------- 1550 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++I L + I G + A L +K + + Q LE+ Sbjct: 1551 EEIKARVPSLASVDAILEQTAGDVRRAGQLLQDAQRAKARAEGVRGTAEAVQQALEEARQ 1610 Query: 267 IKECSNI---SFEKIIQKTEKNIIPMKRNI--LQESLRIWNKNLVRETLHKI------DH 315 + + S IQ +E I M+ +++ L + ++ Sbjct: 1611 AQGAAGQALHSTAADIQHSEHTIGTMRAQTLGVEQQL--------ASAMERLGLLEGQTD 1662 Query: 316 RIHLARKKKYLEKNIIFQT 334 + + R L Sbjct: 1663 ALKVKRANNSLAATRAHDA 1681 >gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus selenitireducens MLS10] gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus selenitireducens MLS10] Length = 600 Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +EE + G ++ +A ++ G + + L + SY D +T Sbjct: 179 TAHTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYA--DTSVTLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 V II + +++ A + ++ + + D ++ Sbjct: 237 VLSIIGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDP 278 >gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 625 Score = 42.7 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205 L+ L +A ++ G ++R+ L L ++ + Sbjct: 200 ASDLVGLFTTIAAKEGIEAEADALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + +L L+ ++ Sbjct: 257 VRSMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLK 316 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + +N +++T+ K + RIW Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKGVAVTTLSRIW 351 >gi|309809322|ref|ZP_07703191.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 2503V10-D] gi|312873939|ref|ZP_07733975.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2052A-d] gi|308170435|gb|EFO72459.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 2503V10-D] gi|311090488|gb|EFQ48896.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2052A-d] Length = 328 Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I ++ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLTYV-----DVLESGIDGLIATMSESSLFSLQ 71 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKVLKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDEQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] Length = 422 Score = 42.7 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 20/195 (10%) Query: 145 DNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LED 198 D +I L I++S L + ++A + GD ++ N L+ Sbjct: 155 DVRIALDRAIDDSDRGLKSYHPVVDEDAMEYFSTQSQGDVRSALNALELAVLSADEENNQ 214 Query: 199 ILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 IT KD + D H + + + A+ + + Sbjct: 215 RHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPT 274 Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVR 307 + + + E + + + IQ E+ P R L ++ + + Sbjct: 275 IVRRLLVISY---EDVGLASPSAGQRTLAAIQSAERLGFPEARIPLSQAVIELCLSPKSN 331 Query: 308 ETLHKIDHRIHLARK 322 + ID + RK Sbjct: 332 SGITAIDSALSDIRK 346 >gi|251773179|gb|EES53732.1| AAA ATPase [Leptospirillum ferrodiazotrophum] Length = 451 Score = 42.7 bits (99), Expect = 0.100, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 20/141 (14%) Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN 186 + +L P ++ L L++ L + A+ +L+ GGD Sbjct: 154 ASRLLLFPFQPLDENALSTLLDRGLHRLARETHGPPLQLDPAARSLLVRYSGGDGRRLLL 213 Query: 187 ELQKLSSYCLEDI----LITEQHVKDIIC---------DTHVLYIEEIINATIQGKIYNA 233 L+ + E+ V I+ D+H I I + A Sbjct: 214 ALESAVLMASGRGGEEFRVGEEDVLAILSRAGQVYGDKDSHYDTISAFIKSVRNYDPDAA 273 Query: 234 IMLADFFLASKMPSHALLHGF 254 + + + Sbjct: 274 LHWLARMIEGGEDPLYIARRL 294 >gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506] Length = 309 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 18/191 (9%) Query: 75 NSTSLFSKKKI------ILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + F++++I ++I + + + ++ + I+ NT Sbjct: 82 TTIKSFAQRRIKDCSFKVIILDEADSMTTAAQQAMRRVMEVHSSECRFILIC------NT 135 Query: 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 L KI E + + +++ + E ISKEA +++ GD S Sbjct: 136 LTKIFEPIQSRCAILRFDRIENSMILERLREISKDEGIKISKEALDLIVELSDGDMRQSL 195 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 N LQ S I + ++ II IE ++ ++ + A+ + D K Sbjct: 196 NILQACIS---SSETIDQGYIIKIIGLPSPKRIERVLERLLRNEAEEALKMFDEIWDEKF 252 Query: 246 PSHALLHGFLQ 256 L++ F + Sbjct: 253 DPLDLINSFFR 263 >gi|261749143|ref|YP_003256828.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497235|gb|ACX83685.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 574 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + +++ + I EA ++ N G + N +KL+ Y + I+ + V Sbjct: 162 RDIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFY--DQRKISRELVM 219 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 + + Y +II+ + KI ++L D + S + G + F+ L Sbjct: 220 EKLGILDTSYYFKIIDYLLDQKISQILILLDKIFQFGVSSINFISGLTKHFRDLLL 275 >gi|229175073|ref|ZP_04302591.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3] gi|228608441|gb|EEK65745.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3] Length = 428 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYDVTVTSEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces japonicus yFS275] gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces japonicus yFS275] Length = 344 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 37/200 (18%) Query: 102 EEIIIKNICNHIIII--KSNEIKKNN--TLRKIAEKFTSVL--AISCYPDN--------- 146 ++ + H I+I +++ + LR+ E +++ A++C N Sbjct: 112 QKKVNLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSR 171 Query: 147 ----------KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 + + + E SI+ + L+ GD R + L S Sbjct: 172 CAILRYSRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGDM---RQAINNLQSTVA 228 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 L+ ++V + + + ++I + G I A+ ++ + Sbjct: 229 GFDLVNSENVFKVADQPSPVAVLDMIRHCMHGDIDKALERLKGIWGLGFSPVDIITTMFR 288 Query: 257 ---------KFQLLEKIHII 267 ++ LE + I Sbjct: 289 VVKTMNEVPEYSRLEMLREI 308 >gi|289675758|ref|ZP_06496648.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae FF5] Length = 138 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +++++ + + K L E + + +++I ++ + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSA 120 >gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32] gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32] Length = 438 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 22/186 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 E L +I+ +A + GGD + N L+ + E+ IT ++V++ + Sbjct: 185 ERGLGNLDLAITDDALSYMAEQAGGDGRVALNTLETAARLA-ENGTITIENVREAVQKKP 243 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 + H I I + A+ + + +L +++ Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDAAVYWLARLIEAGEDPLFILR------RMVILA 297 Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319 ++ +++ + +P R IL +++ + ID + Sbjct: 298 SEDIGNADPRALQVVVSALQAFQMVGMPEGRIILSQAVTYLATAPKSNASYLAIDEALAE 357 Query: 320 ARKKKY 325 RK Sbjct: 358 VRKSGA 363 >gi|297183162|gb|ADI19304.1| hypothetical protein [uncultured SAR406 cluster bacterium HF0500_01L02] Length = 335 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 111/314 (35%), Gaps = 29/314 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79 + G D+ L F + I+ +D ++L E++ N +++ +T L Sbjct: 25 PFYFLMGEDQFL----QQWFIQKITDCLFSNDKVKKMILIPDEMRSNE--IMDKLMATDL 78 Query: 80 FSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138 F+ KK+ ++ N + K KV D + + K + ++ NE N + V Sbjct: 79 FNSKKLFILRNPNALKGKVRDEMIDFCQKPSDLNTLVFIQNEYGAKNKFIQSL--VRVVN 136 Query: 139 AISCYPDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 ISC + +++ + L +SK L+ G +NE+ K+S + Sbjct: 137 PISCATPFESDMINWAKFFLKENGIYEVSKPIINTLIEIAGDSLSHLKNEIDKVSILVDD 196 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + ++ + E N Q ++ ++ L ++ LL+ + Sbjct: 197 SKELNQEDITQFSGWKRKFRQYEFFNFLGQRRLKESMELGRAMVSQDTTMINLLYPLTEF 256 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW----NKNLVRETLHKI 313 FQ L I I +++ + L+ + + + L ++ Sbjct: 257 FQELLFIKISDGTNSVKKG----------YTRLSPSVNRELKHYAKQFSNKEITIALKRL 306 Query: 314 ---DHRIHLARKKK 324 D ++ +R Sbjct: 307 GQIDAKLKTSRIND 320 >gi|292656553|ref|YP_003536450.1| replication factor C large subunit [Haloferax volcanii DS2] gi|291372005|gb|ADE04232.1| replication factor C large subunit [Haloferax volcanii DS2] Length = 488 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 23/232 (9%), Positives = 78/232 (33%), Gaps = 21/232 (9%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64 ++ + + K + +GS + ++ + + I+ Sbjct: 21 KARDALAEWAKTWDDHREAVVVHGSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIE 80 Query: 65 KNISTFWNEIN---STSLFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIII 116 + S++ S +++++++ ++ + ++ + ++I Sbjct: 81 RFAGRAAKNATLAGSSAGTSTRQLVILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIA 140 Query: 117 -KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 + ++ + LR ++ I + ++ ++ + +A + Sbjct: 141 NEFYDMSRG--LRNACQE------IEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAE 192 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 GD ++ N+LQ + ITE+ V D + + E ++A ++ Sbjct: 193 MNSGDLRSAVNDLQAI---AEGREKITEEDVVMGDRDRS-VGLFEFLDAVLK 240 >gi|332703468|ref|ZP_08423556.1| DNA polymerase III delta [Desulfovibrio africanus str. Walvis Bay] gi|332553617|gb|EGJ50661.1| DNA polymerase III delta [Desulfovibrio africanus str. Walvis Bay] Length = 342 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 10/137 (7%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKSNEIKK 123 + FW +++S L K++L+ K L + I I+S K Sbjct: 45 PARFWQDLSSPGLLGGSKLVLLRRAEALKADAWKELSPRLAGFNEACWPIFCIESAWQKG 104 Query: 124 NNTLRKIAEKFTSVLAI-------SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 + L K A + L + + + + L A Sbjct: 105 SPKLPAHLTKAKPWEAAKARNWVWQSPGLTRKTLPGFVLARFKAEGLHATPQVLEGLCAR 164 Query: 177 LGGDRIASRNELQKLSS 193 L D A +E+ KLS Sbjct: 165 LPEDASAVSSEIAKLSL 181 >gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133] gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11] gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46] Length = 415 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 145 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 322 SNSAMSAIDSALSDIR 337 >gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 427 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 157 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 216 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 217 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 276 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 277 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 333 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 334 SNSAMSAIDSALSDIR 349 >gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MW2] gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MSSA476] gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476] gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398] gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21193] Length = 424 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|259500691|ref|ZP_05743593.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners DSM 13335] gi|302191381|ref|ZP_07267635.1| DNA polymerase III, delta subunit [Lactobacillus iners AB-1] gi|325911491|ref|ZP_08173902.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 143-D] gi|259168075|gb|EEW52570.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners DSM 13335] gi|325476691|gb|EGC79846.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 143-D] Length = 328 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I I+ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWIKDQIVDEL 276 >gi|219850060|ref|YP_002464493.1| DNA polymerase III subunits gamma and tau [Chloroflexus aggregans DSM 9485] gi|219544319|gb|ACL26057.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aggregans DSM 9485] Length = 613 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 72/195 (36%), Gaps = 14/195 (7%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + L + + + + + I+ + E+ K T+ ++FT V + + + Sbjct: 135 AAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRH------SVTSMAAHV 188 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + + A + + G + L++L+S+ + IT QHV+ ++ T Sbjct: 189 RRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFV--EGPITLQHVQSLLGMTA 246 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI-----HIIKE 269 ++ +I A + + A+ + +++ + + + + + Sbjct: 247 AAEVDALIEALLSADLTAALRAVNAVANQGADLRQFARDVVERLRAVMLLNATGDRTLLD 306 Query: 270 CSNISFEKIIQKTEK 284 + +++Q ++ Sbjct: 307 LGDDEVAQLMQWAQR 321 >gi|298294413|ref|YP_003696352.1| DNA polymerase III subunits gamma and tau [Starkeya novella DSM 506] gi|296930924|gb|ADH91733.1| DNA polymerase III, subunits gamma and tau [Starkeya novella DSM 506] Length = 658 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 6/174 (3%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI---LIT 202 L + I EA ++ G + + L + ++ + Sbjct: 228 EAGTLARHLRAICDAEGVGIDTEALSLVARAAEGSVRDALSLLDQAIAHAGGQSSGNTVH 287 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + V+ ++ + ++ A ++G + A+ S ++ + L+ Sbjct: 288 GEQVRALLGLADRGRVIDLFEALMKGDVAQALTELREQYDSGADPAVVIADLAEFTHLVT 347 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 K+ II E ++ + + + K ++ R W ++ + L ++ Sbjct: 348 KLKIIPETAD-DPALVEAERVRGRDFAKALSMRVLARAW--QMLTKGLSEVQQA 398 >gi|289812311|ref|ZP_06542940.1| DNA polymerase III subunit delta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%) Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 A Q+L G+ +A L++LS D +T V+ + D ++A Sbjct: 1 AANQLLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALTD 59 Query: 228 G-KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 G K ++ LL ++ LL + ++ ++ + K + Sbjct: 60 GEKQTRVCIILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--V 115 Query: 287 IPMKRNILQESLRIWNKNLV 306 +R ++ ++L+ + + Sbjct: 116 WQNRRPMIGDALQRLHPAQL 135 >gi|254414024|ref|ZP_05027792.1| DNA polymerase III, subunits gamma and tau [Microcoleus chthonoplastes PCC 7420] gi|196179160|gb|EDX74156.1| DNA polymerase III, subunits gamma and tau [Microcoleus chthonoplastes PCC 7420] Length = 379 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 73/198 (36%), Gaps = 15/198 (7%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + + + + L + S + EA +++ + G S L++L+ + I HV Sbjct: 185 TQDITERLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMST--NGKIEPHHV 242 Query: 207 KDIICDTHVLYIEEIINATIQ---GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 +D+I + ++ + Q +++N + L++ + L+ L + L Sbjct: 243 RDVIGSIPADSLVDLCVSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLV 302 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH--LAR 321 + ++ +++ K+ + + ++ ++ + + L ++ Sbjct: 303 FQLSQDTNSLKQGKV-----PFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQS 357 Query: 322 KKKYLEKNIIFQTILYIA 339 + I +L +A Sbjct: 358 SNPLIGLEIC---LLQLA 372 >gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. SK209-2-6] Length = 603 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I ++A ++ G + + L + T Sbjct: 194 EPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 251 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++I+ ++G A+ A A+L Sbjct: 252 VRAMLGLADRGRVLDLIDMILRGDAAGALSELGAQYAEGADPLAVLRDL 300 >gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. CC9311] gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. CC9311] Length = 643 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 I EA ++ G + + L +LS I V D++ + Sbjct: 197 QESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGP---IKADAVWDLLGAVPEQELL 253 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 + A +G+ + + L A+L G + L + + + + Sbjct: 254 NLAEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPD--RPELTGVS 311 Query: 280 QKTEKNIIPMKRNILQESLRIWNK 303 + + + + + + ++ L W Sbjct: 312 PQFREQLPALAKRLGRQRLLYWQA 335 >gi|312871422|ref|ZP_07731517.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 3008A-a] gi|311093075|gb|EFQ51424.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 3008A-a] Length = 328 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I I+ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina DSM 3645] Length = 618 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 12/164 (7%) Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + EA ++L G S++ L++L IT V ++ I Sbjct: 209 EGVTAEPEALRLLARKANGSMRDSQSLLEQLL--AFGGREITVADVNQMLGAAGSEQIAV 266 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I+ A + D L + L+ L F + + + + + Sbjct: 267 IMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFF---RDMMTLAVGAGPTLLQT-- 321 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324 ++P ++ + + V + +D + ++ Sbjct: 322 -----VLPTDAEKIEAVAKSYGLANVMAAVQILDDALVRMQRSA 360 >gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis Och 149] Length = 584 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ + I+++A ++ G + + L + T Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAI--SHGAGETTAAQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDL 296 >gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60] gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS00] Length = 424 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM 14684] gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM 14684] Length = 724 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-----L 200 N + ++ +I +A ++ + G + L++L++Y Sbjct: 181 NVEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAE 240 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+ + V ++ + ++A A++ + + + L+ + Sbjct: 241 ISVEDVLAVLGVADAEALFGALDAVSAHDARAALLAVARLVDAGRDAGGLVRELEAHARE 300 Query: 261 LEKIHIIKEC 270 L + ++ E Sbjct: 301 LLAVQVLGEV 310 >gi|330983038|gb|EGH81141.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 123 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 V++ G D L E + + D + +A + T S SLF+ Sbjct: 18 PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQASASMSLFA 74 Query: 82 KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 +++++ + + K L E + + +++I ++ + Sbjct: 75 ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSA 120 >gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] Length = 424 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRQVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + +I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAVIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica ACS-049-V-Sch6] Length = 763 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 101/303 (33%), Gaps = 28/303 (9%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLSTEKKVL-DCLEEIIIKNI 109 ++ LEI + +EI + + +KK+ +I+ + L + I + Sbjct: 88 MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I + EI+K T+ +++T + ++ ++ Sbjct: 148 DHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLQYVADKEGFALEDN 201 Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 A +++ + G + + L + IT V+++I +I + ++A G Sbjct: 202 AARLIAVHADGGLRDALSILDQCVGMA--SGEITPAVVEELIGLVSKDWIIKFLSALHNG 259 Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288 + L+ ++ Q + L + + + Sbjct: 260 DGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEELKVYDSF--------- 310 Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348 + L+++ + + + + ++ + A++ I ++ A + +++ Sbjct: 311 -RTEFLEQA-KDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVLCAGVSKAHDDV 368 Query: 349 YKR 351 R Sbjct: 369 EDR 371 >gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM 4184] Length = 320 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 45/235 (19%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 +I E + +F + + PF LV+L+ + + S + + ++I+ I Sbjct: 82 NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKI 148 +T +L II+ I + +++I+ N + K + LR IAE Sbjct: 131 NTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN--------------- 175 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 IS +A + + GD R + L + ITE V Sbjct: 176 ------------EGVKISDDALETIYEFTQGDM---RKAINALQIAAATEKEITEDVVAR 220 Query: 209 IICDTHVLYIEEIINATIQGKIYNAI-MLADFFLASKMPSHALLHGFLQKFQLLE 262 + + E + ++G A+ + F + + ++ ++ L+ Sbjct: 221 ALGMVSPRLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRLD 275 >gi|312872377|ref|ZP_07732447.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2062A-h1] gi|311092200|gb|EFQ50574.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF 2062A-h1] Length = 332 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YG++ L ++ F K + +D + ++ I I+ +SLFS + Sbjct: 17 LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71 Query: 84 KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132 ++I+++N + K L+ L+++I +I + +I+ +N +I K + K+ Sbjct: 72 RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K +V+ + + +++ + +A L+ + N KL Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + +E I + VK I + + EI+ A A D + + + ALL Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 F + + L + I+ + ++I+ + Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276 >gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii as4aup] Length = 646 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 64/205 (31%), Gaps = 15/205 (7%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + +A ++ G + + + + + Sbjct: 190 ESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAI--AHSNGNVNAIA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + NA+ + +L L+ ++ Sbjct: 248 VRTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADFNHLVTRLR 307 Query: 266 ---IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR- 316 I E +++ E+ ++ + K+ + R W V +T + Sbjct: 308 FTPEIVEDFSLTEEQRLRSLD----FSKKLSVPILSRNWQMLLKGLQEVNQTARPLQAAE 363 Query: 317 IHLARKKKYLEKNIIFQTILYIAQT 341 + L R + + + + + Q Sbjct: 364 MLLIRLAHTADLPTLDEALKKLTQE 388 >gi|294625531|ref|ZP_06704159.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600200|gb|EFF44309.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 170 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 46/129 (35%), Gaps = 4/129 (3%) Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 + G+ +A+ E+ KL+ + + + ++ ++ D + + T G+ I + Sbjct: 1 MEGNLLAAAQEIDKLALLA-DGKTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRM 59 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 AL+ +++ + + + + ++ + ++ + Sbjct: 60 LAGLRGEGEAVAALMPILIKELLRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKR 116 Query: 297 SLRIWNKNL 305 +L+ + Sbjct: 117 ALQRHPEPH 125 >gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] Length = 478 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNIC 110 ++ L+A + I + + + K K+ +I+ + K+ + L + + + Sbjct: 87 DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165 + + ++ + + EK + C ++ +LIE+ L I Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 +EA + G + L+++ + + I + V + + + + +NA Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282 G + + D S L+ ++ + LE+ + + S ++ ++ Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312 >gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi HTCC2506] Length = 668 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 60/197 (30%), Gaps = 13/197 (6%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L+ +++ + I +A +++ G S + + +T Sbjct: 196 ESATLIGHLKQIAEKEKVEIEDDALRLIARAAEGSVRDSLSLTDQAI--AHGAGAVTAGA 253 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ + + ++ ++G +A++ +L L+ + Sbjct: 254 VRDMLGLADRVRVIDLFEYIMKGDAASALVELRDQYTVGADPAIVLGDLADFTHLVTTLR 313 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 E + + E+ + K ++ ++W + + R Sbjct: 314 YAPEAA-EDAVLSPDEAERGLAYSKTLSIRTLGQVWQM---------LLKALEETRNADS 363 Query: 326 LEKNIIFQTILYIAQTA 342 + ++ IA A Sbjct: 364 PRQA-AEMALIRIAHAA 379 >gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842] Length = 548 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 63/167 (37%), Gaps = 8/167 (4%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + L + + + + I I+ + ++ K T+ ++F +++ + Sbjct: 134 GAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP------RDIIERL 187 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + + I ++A Q+L G + + + + ++ + IT+ V +++ Sbjct: 188 RHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFA-TNETITKDDVSEVVGRIS 246 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + IE I ++G + L + + + LL + + L Sbjct: 247 IEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDL 293 >gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] Length = 478 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ L+A + I + + + K K+ +I+ + K+ + L + + + Sbjct: 87 DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165 + + ++ + + EK + C ++ +LIE+ L I Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 +EA + G + L+++ + + I + V + + + + +NA Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282 G + + D S L+ ++ + LE+ + + S ++ ++ Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312 >gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] Length = 478 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ L+A + I + + + K K+ +I+ + K+ + L + + + Sbjct: 87 DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165 + + ++ + + EK + C ++ +LIE+ L I Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 +EA + G + L+++ + + I + V + + + + +NA Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282 G + + D S L+ ++ + LE+ + + S ++ ++ Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312 >gi|150021037|ref|YP_001306391.1| DNA polymerase III, delta [Thermosipho melanesiensis BI429] gi|149793558|gb|ABR31006.1| DNA polymerase III, delta [Thermosipho melanesiensis BI429] Length = 316 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 12/208 (5%) Query: 66 NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 ++ + ++++ LFSK I+ + + K + + I + +I ++ + Sbjct: 37 DVKIIFEKLSNLGLFSKNVIVDVIDFDKFKSSERS-KILEINVSSENYLI-----LRTQS 90 Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185 ++K E P + LIEE L + AK L N+G + IA Sbjct: 91 KVKKKMEGLDIREFKLPNPWEEDKWGKLIEEFLSEEGIKLDGLAK-FLFENVGPNDIAIY 149 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 NE+ KL + ++ Q K+++ V +++ + + L + + Sbjct: 150 NEILKLKVF---KDDLSLQLAKELVHKYTVSKLDDFCFMVSKREKDALAYLKEIVRDYEF 206 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNI 273 P +++ F L K+ E + Sbjct: 207 P--VIVYALSNHFITLYKLINFVEVKSR 232 >gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217] Length = 587 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ IS +A ++ G + + L + T Sbjct: 190 EPEVMIALLRRIADKESAQISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDL 296 >gi|327329176|gb|EGE70936.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL103PA1] Length = 948 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|284049060|ref|YP_003399399.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus fermentans DSM 20731] Length = 671 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 15/174 (8%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + + +E+ EA +++ G R+ L L + +T + V+ Sbjct: 181 DEIAEHLEKVAKGSHIQAEPEALRLMAIQADG---GLRDALSLLDQCSVMASPVTAETVR 237 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ + E++ Q + A+ L +L L+ F+ L Sbjct: 238 QVLGLVGREKLRELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYFRALLLYQAD 297 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 +E I R L E+ ++ + + ++ +I I ++ Sbjct: 298 REYQEIYLTDT------------REALAETASLFTSSQIVASVERIHEAIRESK 339 >gi|254490491|ref|ZP_05103677.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxidans DMS010] gi|224464235|gb|EEF80498.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga thiooxydans DMS010] Length = 569 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 7/140 (5%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 + D + L EA + L G + + L + +T + V + Sbjct: 183 ISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAI--AFGGGEVTSESVFQM 240 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII-- 267 + + I++A ++ + + A H + L Q + + ++ Sbjct: 241 LGSISQDQLILILDALLKQDGKALLAQSAELAALGRDFHVVFDFLLSALQQIATLQLVPD 300 Query: 268 ---KECSNISFEKIIQKTEK 284 E ++ ++ + + Sbjct: 301 LEPVEANSPQLTELAAQFDP 320 >gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] Length = 663 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 11/189 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + + IS++A ++ G + + L +L+ + ++ + V D++ Sbjct: 189 LSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGD---VSPEQVWDLVGSV 245 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + ++ A Q N + L +L ++ L ++ Sbjct: 246 SEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305 Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333 + ++ + + LR + + + + L + Sbjct: 306 -VSCTQETWQQLVNFATELDITFILR-------GQQQLRTAEAQLKSTTQPRLWLEVTLL 357 Query: 334 TILYIAQTA 342 +L I Q + Sbjct: 358 GLLPITQNS 366 >gi|308270884|emb|CBX27494.1| hypothetical protein N47_H23160 [uncultured Desulfobacterium sp.] Length = 571 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 85/254 (33%), Gaps = 37/254 (14%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN--KIHLM 151 + + L + + + + + I E + I C + +I L Sbjct: 146 QAFNALLKTLEEPPPHVMFIF------------ATTEPHKIPVTILSRCQRHDFKRIGLD 193 Query: 152 DLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVK 207 D+ ++ L +S E+ + GG R+ L L + I E+++ Sbjct: 194 DITDQMLYICKKENVDVSSESLTAIARAAGG---CMRDALSLLDLVLSCSEGRINEENLS 250 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 DII I +I +A + I + + D + L + F+ L I Sbjct: 251 DIIGLVDRRTIFKITDAVLSADIVALLDVLDDLYQNGHNFKELYSEITEHFRNL-----I 305 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKIDHRIHLARKKK 324 +K+I I N++ + ++ + + L++ + I + Sbjct: 306 VVKMGKKIDKLISLPSSEI-----NLMVKQVKDIPATFLNQIFDILYREESAIRFS-PNP 359 Query: 325 YLEKNIIFQTILYI 338 L IIF +L + Sbjct: 360 KLALEIIFFRMLQV 373 >gi|313772740|gb|EFS38706.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL074PA1] gi|313832224|gb|EFS69938.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL007PA1] gi|314976987|gb|EFT21082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL045PA1] gi|327331270|gb|EGE73009.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA2] gi|327450460|gb|EGE97114.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA2] gi|328761179|gb|EGF74721.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL099PA1] Length = 948 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162] gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM 20162] Length = 456 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 17/129 (13%) Query: 146 NKIHLMDLIEESLLI-----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 H+ +LI+ +L G +I+ EA+ L+ GGD S L+ + + + Sbjct: 186 EPGHISELIDRALTDPRGYDGALTITDEARDHLVRLAGGDARRSLTALEAAADVAMGEQA 245 Query: 200 -LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248 I V+ I D H I I + + A+ + + Sbjct: 246 AEIDLDIVESSIDTAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMITAGEDPR 305 Query: 249 ALLHGFLQK 257 + + Sbjct: 306 FIARRLVVH 314 >gi|313834284|gb|EFS71998.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL056PA1] gi|314974379|gb|EFT18474.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA1] gi|314985375|gb|EFT29467.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA1] gi|315097214|gb|EFT69190.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL038PA1] gi|327447352|gb|EGE94006.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL043PA1] Length = 982 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507 >gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550] gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550] Length = 476 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|225465294|ref|XP_002268959.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1219 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 33/227 (14%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154 + + + + I + ++ E + C Y N + ++ + Sbjct: 581 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 630 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + + +A +++ N G + L +LS IT V D++ Sbjct: 631 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 687 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274 + E++ + + A + S + L L + + Sbjct: 688 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVL-------MSQLASLIMDIIAG--- 737 Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I+ + + R++ + + + ++ L + R Sbjct: 738 TYHIVDAQQSDSFFGGRSLTEAEM-----DRLKHALKLLSEAEKQLR 779 >gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] Length = 478 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ L+A + I + + + K K+ +I+ + K+ + L + + + Sbjct: 87 DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165 + + ++ + + EK + C ++ +LIE+ L I Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 +EA + G + L+++ + + I + V + + + + +NA Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282 G + + D S L+ ++ + LE+ + + S ++ ++ Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312 >gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 605 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 53/159 (33%), Gaps = 9/159 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + L+ + S+ +A ++ G S + L + + Sbjct: 200 DAGALVGHLASISAKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGSVGADA 257 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ + A+L + L+ ++ Sbjct: 258 VRAMLGLADRARIVDLFEHVMKGDVAAALGEFRAQYDTGADPAAVLTDLAEFNHLVTRLR 317 Query: 266 II---KECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + E +++S ++ + + + ++ R W Sbjct: 318 FVPTAIEDASLSEDERQRGAD----FARTLSVRVLSRTW 352 >gi|317484767|ref|ZP_07943666.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316923974|gb|EFV45161.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 325 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 32/237 (13%) Query: 67 ISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 FW + LFS +++++ N + V L + + + Sbjct: 46 PPKFWEILTLQGLFSTSRVLVMRNAHALTADVWKRLSAALSRPNPQTWPLF--------- 96 Query: 126 TLRKIAEKF-----TSVLAISCY--PD-----------NKIHLMDLIEESLLIGQKSISK 167 L EK + + C+ D L I+ + Sbjct: 97 CLEVAWEKGQPKIPAHIAKLPCFTFADAKGWIWRSPGLEPRSLRRHIQIRSKALGLDLEP 156 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 IL L D A EL KL +T++ + + T + + Sbjct: 157 GCVDILAETLLPDAAAVDAELSKLQLLAGGKP-LTQEQAR-SVSPTTEFNVFAFLRQLQA 214 Query: 228 GKIYNA-IMLADFFLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKT 282 G+ + + + + P LL ++ + L + + + S ++ Q+T Sbjct: 215 GQTASVWKSILEEQAKGEEPLFYLLAMLQREARQLWQILAGEQVRMGPSDQQAKQQT 271 >gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1] gi|42559489|sp|Q8Q084|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1] Length = 610 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 26/203 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTS- 78 I YG + + ++ LNA + I S + Sbjct: 49 RAVILYGPAGIGKTSSAHALAG------DMEWEVIELNASDQRTAGVIEKIAGSAASMNT 102 Query: 79 LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAE 132 F K++I+++ ++ + + II + II+ +N+I T+R I Sbjct: 103 FFGGKRLIILDEADNLHGTADRGGMRAISGIIKSTLQ--PIILIANDIYGLTPTVRNICL 160 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + ++ +++ S S+EA + N GGD R+ + L Sbjct: 161 EIKFGSV------QSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGD---FRSAINDLQ 211 Query: 193 SYCLEDILITEQHVKDIICDTHV 215 + + + + D Sbjct: 212 AAANGKKALEAEDISTAGRDVKE 234 >gi|296504892|ref|YP_003666592.1| recombination factor protein RarA [Bacillus thuringiensis BMB171] gi|296325944|gb|ADH08872.1| recombination factor protein RarA [Bacillus thuringiensis BMB171] Length = 428 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSALQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 488 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 78/183 (42%), Gaps = 18/183 (9%) Query: 53 FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104 F ++ LNA + + S + S+S+F KK +I+++ + + + L ++ Sbjct: 65 FEVIELNASDKRNASSIKKVVGHAATSSSVFGKKFLIVLDEVDGISGKEDAGGVSELIKV 124 Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 I K + II+ +N+ + +R + V I P + + ++++ + Sbjct: 125 IKK--AKNPIILTANDAYATS-IRNLL---PYVEVIQLNPVHTNSVYKVLKKIAEKEGLN 178 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + + +++ + GD ++ N+L+ L+ ++ + V+ + I + + Sbjct: 179 VDDKILKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAVQKLPDRKREANIFDALRI 234 Query: 225 TIQ 227 ++ Sbjct: 235 ILK 237 >gi|315078844|gb|EFT50866.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL053PA2] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|313826420|gb|EFS64134.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA1] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|313813997|gb|EFS51711.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA1] gi|313821300|gb|EFS59014.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA1] gi|314926534|gb|EFS90365.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA3] gi|314980021|gb|EFT24115.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA2] gi|314987438|gb|EFT31529.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA2] gi|315081813|gb|EFT53789.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL078PA1] gi|315107699|gb|EFT79675.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA1] gi|315109896|gb|EFT81872.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL030PA2] gi|327444628|gb|EGE91282.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA2] gi|328758132|gb|EGF71748.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL020PA1] Length = 982 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507 >gi|289428998|ref|ZP_06430678.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|289157999|gb|EFD06222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J165] gi|313806717|gb|EFS45222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA2] gi|313811221|gb|EFS48935.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA1] gi|313824758|gb|EFS62472.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL036PA2] gi|313828817|gb|EFS66531.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL063PA2] gi|313840337|gb|EFS78051.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL086PA1] gi|314961562|gb|EFT05663.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA2] gi|314989198|gb|EFT33289.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA3] gi|315082833|gb|EFT54809.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA2] gi|315086408|gb|EFT58384.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA3] gi|315087895|gb|EFT59871.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL072PA1] gi|327333903|gb|EGE75620.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA3] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter denitrificans OCh 114] gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114] Length = 582 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ + I+++A ++ G + + L + T Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAI--SHGAGETTAAQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDL 296 >gi|282853259|ref|ZP_06262596.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|282582712|gb|EFB88092.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes J139] gi|313793235|gb|EFS41302.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA1] gi|313802801|gb|EFS44017.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA2] gi|314964646|gb|EFT08746.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA1] gi|314982793|gb|EFT26885.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA3] gi|315091446|gb|EFT63422.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL110PA4] gi|315105106|gb|EFT77082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA2] gi|327457184|gb|EGF03839.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL092PA1] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2] gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W] gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W] gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2] gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 476 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|295129771|ref|YP_003580434.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] gi|50839298|gb|AAT81965.1| DNA polymerase III subunit gamma [Propionibacterium acnes KPA171202] gi|291376500|gb|ADE00355.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK137] gi|332674610|gb|AEE71426.1| DNA polymerase III subunit gamma/tau [Propionibacterium acnes 266] Length = 957 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 289 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 347 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 348 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 399 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 400 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 456 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 457 RLHLELMCSRILLPGADTDGRGIHAR 482 >gi|315094384|gb|EFT66360.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL060PA1] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|314965630|gb|EFT09729.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL082PA2] Length = 948 Score = 41.9 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|317131169|ref|YP_004090483.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] gi|315469148|gb|ADU25752.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens harbinense YUAN-3] Length = 559 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 18/179 (10%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHV 206 + + ++++ + + G A R+ L L + + E+ V Sbjct: 180 ADIAARLLYVAEQEHIPLTQDGAEAIARLADG---ALRDALSLLDTCANGGGDAVDEEAV 236 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 Y+ + +A G A+ D AS + L + F+ + Sbjct: 237 ARAAGLAGRDYLYALSDAVHAGDAPQALRTLDELYASAKDADRLCEELIGHFRAIMLTQ- 295 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + LQ++ R ++ V L + H R+ Sbjct: 296 -------------AGSIPPVSASEAGRLQDAARDFDPETVLHALDTLQHTAETLRRAPV 341 >gi|161621801|ref|YP_054923.2| DNA polymerase III subunits gamma and tau [Propionibacterium acnes KPA171202] Length = 900 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 232 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 290 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 291 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 342 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 343 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 399 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 400 RLHLELMCSRILLPGADTDGRGIHAR 425 >gi|314922555|gb|EFS86386.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL001PA1] Length = 627 Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+D + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185] gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185] Length = 476 Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876] gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876] Length = 476 Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|297748177|gb|ADI50723.1| DNA polymerase III, delta subunit [Chlamydia trachomatis D-EC] gi|297749057|gb|ADI51735.1| DNA polymerase III, delta subunit [Chlamydia trachomatis D-LC] Length = 345 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + I ++ + + + ++ +A ++ A L ++ Sbjct: 213 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 272 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 A+L+ ++ L + + E S +I + Sbjct: 273 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 311 >gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A] gi|42559496|sp|Q8TPU4|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans C2A] Length = 607 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 67/203 (33%), Gaps = 26/203 (12%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTS- 78 I YG + +++ ++ LNA + I S + Sbjct: 49 RAVILYGPAGIGKTSSAHALARDMDWD------VIELNASDQRTAGVIEKIAGSAASMNT 102 Query: 79 LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAE 132 LF K++I+++ ++ + + II + I++ +N+I T+R + Sbjct: 103 LFGSKRLIILDEADNIHGTADRGGMRAISGIIKGTLQ--PIVLIANDIYGLTPTIRNLCL 160 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 + ++ +++ S+EA + N GGD R+ + L Sbjct: 161 EIKFGSV------QSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGD---FRSAINDLQ 211 Query: 193 SYCLEDILITEQHVKDIICDTHV 215 + + + + D Sbjct: 212 AAASGKEKLEVEDIGTAGRDVKE 234 >gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 476 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 377 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 46/257 (17%) Query: 24 FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +FYG G ++ ++ Y + ++ LNA + Sbjct: 88 LLFYGPPGTGKTSTIVALAREIYGPNYKN--MVLELNASD-------------------D 126 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEKFTS---- 136 + I ++ N + II+ +++ + N+LR+I EKFT Sbjct: 127 RGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLRRIIEKFTKNCRF 186 Query: 137 ------------VLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 L C +P ++ + I ++ + I+ +A LL G Sbjct: 187 CILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITPDALNALLHLSQG 246 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK-IYNAIMLAD 238 D S N LQ + +D I + + + H IE +++ ++ + L Sbjct: 247 DMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDSILKDDWTTAYLTLTK 306 Query: 239 FFLASKMPSHALLHGFL 255 + + + L+ GF+ Sbjct: 307 YKTVNGLALVDLITGFI 323 >gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM 43247] gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis DSM 43247] Length = 774 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 58/188 (30%), Gaps = 12/188 (6%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 L+E +++ E +++ GG S + L +L +D +T ++ Sbjct: 184 GLLERICAQEHVTVAPEVYPLVIRAGGGSPRDSLSILDQL-LAGADDRGVTYDRALALLG 242 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T + I++ I+A G + + + L++ + L + + + + Sbjct: 243 VTDIALIDDTIDALATGDGATLFGTVEKVVDAGHDPRRFAVDLLERLRDLILLQAVPDAA 302 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYLEK 328 + + + + + + R + L + Sbjct: 303 ERGLVEAPGDQL--------ARMNRQIETLGAASLTRFAELVHAALGEMRGTTSPRLLLE 354 Query: 329 NIIFQTIL 336 + + +L Sbjct: 355 VMCARMLL 362 >gi|313817549|gb|EFS55263.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA2] Length = 633 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus C3-41] Length = 636 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 95/292 (32%), Gaps = 47/292 (16%) Query: 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNIS----ITYHDPFS----------L 55 ++ S K+ ++H ++F G F K ++ I Y+ + Sbjct: 30 LENSIKHNKVAH-AYLFTGPRGTGKTSAAKIFAKLLNCQSPIDYNPCGECVCCQDSNTDI 88 Query: 56 VVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNH 112 + ++A +I ++N F KKK+ +I+ + + L + + + + Sbjct: 89 IEMDAASNNGVDDIRDLREKVNYAPAFGKKKVYIIDEVHMLSTAAFNALLKTLEEPPAHI 148 Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQKSI 165 + I+ E I C + ++ ++ + I Sbjct: 149 VFIL------------ATTEPHKIPATILSRCQRYDFRRISQDDIVHRMKTIVEAESVEI 196 Query: 166 SKEAKQILLA-NLGGDRIASR---NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 ++A +++ GG R A + K+ + +T Q + +I I + Sbjct: 197 EEQALRLISQIAAGGMRDALSLLDQAISKV------EGKVTLQDIIEITGAVDTRKIGTL 250 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 I Q I A+ + S H L + + + + E + + Sbjct: 251 IQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEKATL 302 >gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium denitrificans ATCC 51888] Length = 617 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 89/289 (30%), Gaps = 39/289 (13%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 NI T L ++ K+ +I+ + K + L + + + + I + EI+K Sbjct: 132 DNIREIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRK 191 Query: 124 ----------NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 LR++ + L ++ +A Q++ Sbjct: 192 VPVTVLSRCQRFDLRRV---------------EQPVLAAHFKKISESEGAEADADALQLI 236 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 G + L + + + +T V+D++ I ++ A +G + A Sbjct: 237 ARAAEGSVRDGLSILDQAI--AMGEGHVTAASVRDMLGLADRGRIFDLAEAIFRGDLPAA 294 Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293 + + ++ + + ++ + E + +++ ++ Sbjct: 295 LNGFASLHRDGAEASEVIGDLAEAVHAIARVKAVGE----------EPAGESLTAEEKKR 344 Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 L + + + + + + + ++ +A TA Sbjct: 345 LSDLASRLSMPYLSRAWQMLIKGLEEVGRTPNPDVA-AEMVLIRLAYTA 392 >gi|228993137|ref|ZP_04153059.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM 12442] gi|228766596|gb|EEM15237.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM 12442] Length = 420 Score = 41.5 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 159 EKGLGEYHVTVTDEAMCHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEECL 218 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335 Query: 320 AR 321 R Sbjct: 336 LR 337 >gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera] Length = 1078 Score = 41.5 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 33/227 (14%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154 + + + + I + ++ E + C Y N + ++ + Sbjct: 455 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 504 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + + +A +++ N G + L +LS IT V D++ Sbjct: 505 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 561 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274 + E++ + + A + S + L L + + Sbjct: 562 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVL-------MSQLASLIMDIIAG--- 611 Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 I+ + + R++ + + + ++ L + R Sbjct: 612 TYHIVDAQQSDSFFGGRSLTEAEM-----DRLKHALKLLSEAEKQLR 653 >gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15] gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24] gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24] gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15] Length = 476 Score = 41.5 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11] Length = 607 Score = 41.5 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ I+++A ++ G + + L + T Sbjct: 196 EPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 253 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 254 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDL 302 >gi|229048107|ref|ZP_04193680.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676] gi|228723262|gb|EEL74634.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676] Length = 420 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 159 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 218 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335 Query: 320 AR 321 R Sbjct: 336 LR 337 >gi|327334774|gb|EGE76485.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL097PA1] Length = 941 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|206969731|ref|ZP_03230685.1| ATPase, AAA family [Bacillus cereus AH1134] gi|228941567|ref|ZP_04104116.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974497|ref|ZP_04135064.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981091|ref|ZP_04141392.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407] gi|206735419|gb|EDZ52587.1| ATPase, AAA family [Bacillus cereus AH1134] gi|228778632|gb|EEM26898.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407] gi|228785214|gb|EEM33226.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818123|gb|EEM64199.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942181|gb|AEA18077.1| recombination factor protein RarA [Bacillus thuringiensis serovar chinensis CT-43] Length = 428 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048] Length = 562 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148 + L + + + + I I+ E I C Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ +++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|30022475|ref|NP_834106.1| recombination factor protein RarA [Bacillus cereus ATCC 14579] gi|218235142|ref|YP_002369209.1| recombination factor protein RarA [Bacillus cereus B4264] gi|229129680|ref|ZP_04258648.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4] gi|29898033|gb|AAP11307.1| ATPase, AAA family [Bacillus cereus ATCC 14579] gi|218163099|gb|ACK63091.1| ATPase, AAA family [Bacillus cereus B4264] gi|228653797|gb|EEL09667.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4] Length = 428 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|303239743|ref|ZP_07326267.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] gi|302592680|gb|EFL62404.1| DNA polymerase III, subunits gamma and tau [Acetivibrio cellulolyticus CD2] Length = 555 Score = 41.5 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 81/244 (33%), Gaps = 29/244 (11%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148 + L + + + + + I+ E I C + Sbjct: 134 GAFNALLKTLEEPPGHVVFIL------------ATTEPHKLPATILSRCQRFDFRRIPVE 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++ IE + SI E +++ G + + L + L + +T V Sbjct: 182 SIVKRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQCI--SLGNKHLTYDDVLS 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + +I ++++A ++ + L + + + + ++ L + Sbjct: 240 VVGIVNNTFIADMVDAINSKEVEKVLYLINVLVMDGKNITQFVSDLVLYYRNL-----LI 294 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH-LARKKKYLE 327 ++ + E+II+ +++ I + + L + L ++ + + LE Sbjct: 295 CSTSRNPEEIIEASKEMI--QRMKAQSQGLSNIEITSAIKELSTLEATMKWSTHARVLLE 352 Query: 328 KNII 331 +I Sbjct: 353 VALI 356 >gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus weihenstephanensis KBAB4] gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus weihenstephanensis KBAB4] Length = 562 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148 + L + + + + I I+ E I C Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ +++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|324323719|gb|ADY24763.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 536 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 182 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 240 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283 >gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621] Length = 562 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148 + L + + + + I I+ E I C Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ +++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196] gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603] Length = 562 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148 + L + + + + I I+ E I C Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ +++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM 70294] gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM 70294] Length = 350 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 44/262 (16%) Query: 25 IFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 +FYG G ++ K+ ++ LNA + ++ IS ++ + + Sbjct: 59 LFYGPPGTGKTSTILALTKELFGPNLIKS-RVLELNASD-ERGISIVREKVKNFA----- 111 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN--NTLRKIAEKFTSVL--A 139 L+ K + LE+ II+ +++ + + + LR+ E ++++ Sbjct: 112 ------RLTVSKPSKEDLEKY-PCPPYKIIILDEADSMTADAQSALRRTMETYSNITRFC 164 Query: 140 ISCY--------------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 + C D L L + + + + +L G Sbjct: 165 LICNYVTRIIDPLASRCSKFRFKALDETNALDRL-KFVAQEENVNYKENVLEKILEISSG 223 Query: 180 D-RIA--SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 D R A K S+Y E+ IT V+++ + EII I Sbjct: 224 DLRRAITLLQSASKTSTYT-ENSEITVNLVEELAGVVPSPALNEIIEVVSSKNIDAVTKY 282 Query: 237 ADFFLASKMPSHALLHGFLQKF 258 D F+ + ++++ + Sbjct: 283 LDKFIRNGWSGTSVVNQLHNHY 304 >gi|296506517|ref|YP_003667751.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis BMB171] gi|296327104|gb|ADH10031.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis BMB171] Length = 536 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 182 LQAMIDRLKFISNDQGIQITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 240 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283 >gi|229113196|ref|ZP_04242691.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] gi|228670222|gb|EEL25570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-15] Length = 541 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288 >gi|229125265|ref|ZP_04254367.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] gi|228658191|gb|EEL13929.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 95/8201] Length = 541 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288 >gi|72160455|ref|YP_288112.1| DNA polymerase III subunits gamma and tau [Thermobifida fusca YX] gi|71914187|gb|AAZ54089.1| ATPase [Thermobifida fusca YX] Length = 692 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 60/182 (32%), Gaps = 20/182 (10%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 + A +++ GG + + L +L ++ IT + ++ T + E+ Sbjct: 196 KVPYDPAALPLVIRAGGGSARDTLSILDQL-LAGSDERGITREAAVQLLGYTDSSLLGEM 254 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS----FEK 277 ++A G L D + L++ + L ++ + + + Sbjct: 255 VDALGAGDGAAVFELIDRVVEGGHDPRRFAADLLERVRDLVVLNAVPDALDKGLINVPPD 314 Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYLEKNIIFQT 334 +++ +++ R+ + ++ + R + L + + + Sbjct: 315 AVEQMR-----------EQASRL-GAAQLTRAAEILNKGLTEMRGTTSPRLLLELMCSRI 362 Query: 335 IL 336 +L Sbjct: 363 LL 364 >gi|15828933|ref|NP_326293.1| hypothetical protein MYPU_4620 [Mycoplasma pulmonis UAB CTIP] gi|14089876|emb|CAC13635.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 314 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 81/247 (32%), Gaps = 30/247 (12%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 + YG ++ LI +N D EI N+I LFS K Sbjct: 3 LIYGQEEFLIESKTKNIIEN---QKKDSIVFTFYENFEIDD----LLNDIVQKDLFSPNK 55 Query: 85 II------LIENLSTEKKVLDCLE---EIIIKNICNHIIIIKSNEIKK----NNTLRKIA 131 II L+EN K +L+ L+ EII + I EI+K + L+K + Sbjct: 56 IIHIKNWKLLENPRPSKVILNKLKLLSEIIENDKSLIFIFSHIGEIEKNFLSDFLLKKAS 115 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K L + IE + + IS LL N+ NE+ KL Sbjct: 116 VKHYKKL-------ELNEKIKFIESYVTKNKIKISTVLISYLLINVSSSISIVINEINKL 168 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 E+ IT + ++ + E IN+ + S + LL Sbjct: 169 FL---ENQNITREMIEKSVGFYTKEPNFEFINSIKSRNSNSIWKTFLEQKNSGIEPLDLL 225 Query: 252 HGFLQKF 258 F Sbjct: 226 KQISSAF 232 >gi|312879848|ref|ZP_07739648.1| DNA polymerase III delta [Aminomonas paucivorans DSM 12260] gi|310783139|gb|EFQ23537.1| DNA polymerase III delta [Aminomonas paucivorans DSM 12260] Length = 321 Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 17/200 (8%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V + S G L + VL+A E + +S + ++ LF + Sbjct: 4 VVLLVSSGSGRRRLLEETLARLAGPDSE------VLSAREGETWVSLLADNLSG-GLFDE 56 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 ++I+++ + + E L +++ ++ E L E ++ + Sbjct: 57 RRIVVV-DGAQELGPLPPACVALLEPPEASTTLVLLYEQDPGKAL--PPEARERIVRVES 113 Query: 143 --YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 P +D IE + A +L D E++KL+ Sbjct: 114 RPLPRFGRERLDWIEGIAREEGVRLEPGALALLSEAFE-DPGELAMEVRKLALL---GET 169 Query: 201 ITEQHVKD-IICDTHVLYIE 219 + E+ V+ + D L ++ Sbjct: 170 VGEEQVRALCLGDGSRLLVQ 189 >gi|228910235|ref|ZP_04074053.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL 200] gi|228849399|gb|EEM94235.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL 200] Length = 428 Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGKYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D +H Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343 Query: 320 AR 321 R Sbjct: 344 LR 345 >gi|229051606|ref|ZP_04195076.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] gi|228721717|gb|EEL73191.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676] Length = 541 Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288 >gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 427 Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 17/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITEQHVKDII- 210 E L + ++A GD ++ N L+ + IT Q KD + Sbjct: 168 ERGLASYNPKVDEDAMAYFTTQSQGDVRSALNALELAVLSSENIDQQRHITLQDAKDCLQ 227 Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 D H + + + A+ + + + + F Sbjct: 228 KGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISF--- 284 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLA 320 E + + + I+ E+ P R L ++ + + ++ ID + Sbjct: 285 EDVGLASPSAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSGINAIDAALSDI 344 Query: 321 RK 322 RK Sbjct: 345 RK 346 >gi|85712669|ref|ZP_01043715.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] gi|85693519|gb|EAQ31471.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145] Length = 640 Score = 41.5 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 12/122 (9%), Positives = 39/122 (31%), Gaps = 2/122 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ ++ +E L +A +L + G + + + + + Sbjct: 179 DREQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAI--AQGQGKVQVES 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ ++ +++A G + D + +L+ + + I Sbjct: 237 VQRMLGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNELQRVIHRIALIQ 296 Query: 266 II 267 I Sbjct: 297 QI 298 >gi|256370815|ref|YP_003108640.1| putative DNA polymerase III subunit delta [Candidatus Sulcia muelleri SMDSEM] gi|256009607|gb|ACU52967.1| putative DNA polymerase III, delta subunit [Candidatus Sulcia muelleri SMDSEM] Length = 318 Score = 41.1 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 103 EIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 I+ + I+II + + K L K +K + + ++C +++ + + Sbjct: 97 NILKNHYKKTILIICYNNKVLDKRKKLYKYIKK--NGIILNCVKLKTNEILNFFQNEIEE 154 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKL 191 I++ A ++L+ LG + + NE+ KL Sbjct: 155 KGYIITQNAIKLLIKFLGENLYSINNEINKL 185 >gi|30913228|sp|O74111|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication factor C3; AltName: Full=Activator 1 subunit 3 gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans] Length = 338 Score = 41.1 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQH 205 L +IE+ +S EA Q LL GD + N LQ + Y I+E+ Sbjct: 180 HRLAHVIEQE----SVDLSPEAFQSLLHLSSGDMRRALNVLQ--ACYASVDAGEQISEEL 233 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA-LLHGFLQKFQLLEK 263 V D + I ++ A + G +A+ + SK + A +L F +FQ L+ Sbjct: 234 VYDCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDL 292 >gi|320450889|ref|YP_004202985.1| DNA polymerase III subunit delta [Thermus scotoductus SA-01] gi|320151058|gb|ADW22436.1| DNA polymerase III, subunit delta [Thermus scotoductus SA-01] Length = 299 Score = 41.1 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 13/241 (5%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 L+ ++ +++ K T R + L+ +E Sbjct: 65 LKPLLENVPEEVAVLLLDP---KPTTARAAFYRTRERRDFP--TPKGKDLVRHLENRAKR 119 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + Q L + L GD A EL+KL+ L + V + + Sbjct: 120 LGFRLPAGIAQYLAS-LEGDLEALERELEKLALLPPPLTLEKVERVVALKPPVSG---FD 175 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 ++ A ++G+ A LL F +F LL + ++ + + E + Sbjct: 176 LVRAVLEGEAKAAFRHLRRLREEGEEPLRLLGAFAWQFSLLARAWMLLKENPRPTEADLA 235 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILYI 338 + E + + L+ + R K + +L + A+ K +L T+L++ Sbjct: 236 RLEAH-PYAAKRALELA-RGLPKEALEASLDALIQAERRAKEGKDPWLALERAVYTLLHL 293 Query: 339 A 339 Sbjct: 294 T 294 >gi|332007906|gb|AED95289.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 956 Score = 41.1 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 ++D ++ + I K+A +++ + G + L++LS I+ V++ Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + ++++ + N + + + + AL+ Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQL 620 >gi|229115998|ref|ZP_04245393.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] gi|228667492|gb|EEL22939.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus Rock1-3] Length = 541 Score = 41.1 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 I+ EA ++ G + + + ++ +Y + +T + V ++ + I Sbjct: 199 HDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEDVATVVGKVAIQDI 256 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 E++I+ + + + + L K L Sbjct: 257 EKLIHYITEKDLTSTLDSLQTILERKQADFFL 288 >gi|314916439|gb|EFS80270.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL005PA4] gi|314917280|gb|EFS81111.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA1] gi|314921655|gb|EFS85486.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL050PA3] gi|314955184|gb|EFS99589.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL027PA1] gi|315102222|gb|EFT74198.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL046PA1] gi|327454471|gb|EGF01126.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA3] gi|327456539|gb|EGF03194.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL083PA2] gi|328756234|gb|EGF69850.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL087PA1] Length = 948 Score = 41.1 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|289525092|emb|CBJ14563.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296434633|gb|ADH16811.1| hypothetical protein E150_00250 [Chlamydia trachomatis E/150] Length = 314 Score = 41.1 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + I ++ + + + ++ +A ++ A L ++ Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 A+L+ ++ L + + E S +I + Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280 >gi|313764794|gb|EFS36158.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL013PA1] gi|314930699|gb|EFS94530.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL067PA1] gi|328759443|gb|EGF73059.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL025PA2] Length = 982 Score = 41.1 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 481 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507 >gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium papyrosolvens DSM 2782] Length = 562 Score = 41.1 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 2/115 (1%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + + ++ G + + L + + IT ++V D I +I Sbjct: 192 RASGIQLDDDGALLIARLADGALRDALSILDQCI--AEGNNNITHENVLDAIGIVSDDFI 249 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 EI++ + + + AS + F+ L + K NI Sbjct: 250 SEIVDNIQSKNVEGLVADVEKLSASGRDILRFASDLVLYFRNLLICKLSKNPENI 304 >gi|315099548|gb|EFT71524.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA2] Length = 982 Score = 41.1 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 481 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507 >gi|313815375|gb|EFS53089.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL059PA1] Length = 948 Score = 41.1 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447 Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473 >gi|225851358|ref|YP_002731592.1| AAA family ATPase [Persephonella marina EX-H1] gi|225646654|gb|ACO04840.1| AAA family ATPase [Persephonella marina EX-H1] Length = 415 Score = 41.1 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 10/153 (6%) Query: 62 EIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCL-----EEIIIKNICNHIIII 116 EI N + F +EI SL S+ K+++ + +++ II N + I Sbjct: 197 EIADNGTLFLDEIGDLSLTSQAKLLVFVDTKEFERLGSSRPKKVNVRIISATNKNLLQSI 256 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 K + + + R + + I + K + ++ L K I++ A L+ + Sbjct: 257 KKGDFRSDLYYRIAITR----IEIPPLRERKEDIPLIVNSYLHRKGKRITQRAMDFLMEH 312 Query: 177 -LGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 G+ R L+ + +I QH+ D Sbjct: 313 EWYGNIRELRAVLESACIMAYDRDVIDIQHISD 345 >gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 391 Score = 41.1 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 121 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 180 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 181 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 240 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 241 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 297 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 298 SNSAMSAIDSALSDIR 313 >gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer RA-GD] Length = 347 Score = 41.1 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 37/291 (12%) Query: 38 INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92 + + T D FS + L+A +I +++ K K+ +I+ + Sbjct: 60 ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119 Query: 93 TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146 + + + + + + I I+ EK + I C + Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167 Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + + S +A ++ G + + +L ++ IT Sbjct: 168 TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 +++ +I+ I N ++ + + H + G + Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + N S +I+ + + E + W + + + ++ Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYA 325 >gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. 18P13] Length = 530 Score = 41.1 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 10/174 (5%) Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMD 152 + + L +I+ + I+ + EI K T+ ++F + + Sbjct: 131 SQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRCQRFDFRRILP------EDITA 184 Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 + Q ++ ++A +++ G R+ L L D IT V Sbjct: 185 RLLYIAGEEQLTLDEQAARLIARLSDG---GMRDALSLLDQCAAYDSNITLDTVSAAAGI 241 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 + ++++A Q A+ + D A L + + + + +H+ Sbjct: 242 AGRDALFDLLDAMTQSDPAKAVRILDELYAKSKDMLRLCEELIAQLRNVMLLHV 295 >gi|15604766|ref|NP_219550.1| hypothetical protein CT047 [Chlamydia trachomatis D/UW-3/CX] gi|255310849|ref|ZP_05353419.1| hypothetical protein Ctra62_00250 [Chlamydia trachomatis 6276] gi|255317149|ref|ZP_05358395.1| hypothetical protein Ctra6_00250 [Chlamydia trachomatis 6276s] gi|255348410|ref|ZP_05380417.1| hypothetical protein Ctra70_00245 [Chlamydia trachomatis 70] gi|255502951|ref|ZP_05381341.1| hypothetical protein Ctra7_00250 [Chlamydia trachomatis 70s] gi|255506620|ref|ZP_05382259.1| hypothetical protein CtraD_00245 [Chlamydia trachomatis D(s)2923] gi|3328439|gb|AAC67638.1| hypothetical protein CT_047 [Chlamydia trachomatis D/UW-3/CX] gi|296435564|gb|ADH17738.1| hypothetical protein G9768_00250 [Chlamydia trachomatis G/9768] gi|296436488|gb|ADH18658.1| hypothetical protein G11222_00250 [Chlamydia trachomatis G/11222] gi|296437424|gb|ADH19585.1| hypothetical protein G11074_00250 [Chlamydia trachomatis G/11074] gi|297139923|gb|ADH96681.1| hypothetical protein CTG9301_00250 [Chlamydia trachomatis G/9301] Length = 314 Score = 41.1 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + I ++ + + + ++ +A ++ A L ++ Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 A+L+ ++ L + + E S +I + Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280 >gi|294101730|ref|YP_003553588.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] gi|293616710|gb|ADE56864.1| DNA polymerase III, subunits gamma and tau [Aminobacterium colombiense DSM 12261] Length = 554 Score = 41.1 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 29/274 (10%) Query: 58 LNALEIQKNISTFWNEIN------STSLFSKKKIILIENLSTEKKVLD--CLEEIIIKNI 109 L+ +EI + +E+ S S FS + I + + L + + + Sbjct: 88 LDVIEIDGASNNSVDEVRELKAHVSLSAFSSLYKVYIIDEVHMLSLSAFNALLKTLEEPP 147 Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168 + + I+ + E K T+R + I + +++ + ++ +E Sbjct: 148 SHVVFILATTEPHKVPVTIRSRCQH------IPFRKIDVQNIVKSLSMVAHNENRNAEEE 201 Query: 169 AKQILLANLGGDRIASRNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 A + G A R+ L L L + + V ++ +E ++ Sbjct: 202 ALWEIARQADG---AMRDALSLLEQVMALAEQELRLVDVSRLLGGGSRPELERWVSRVRS 258 Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287 G I L ++ F+ L I + I+ + K I Sbjct: 259 GDISVFSEL-QEMFQRGASPQKVVEDLFVIFRDL----WIVASWGGGALQFIEGSSKEKI 313 Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 L++ + WN + + + + + R Sbjct: 314 F-----LEQESKDWNPDHLLKIMDFCAQILPQVR 342 >gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361] gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361] Length = 602 Score = 41.1 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 24/214 (11%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ L+A +NI T + + K+ +I+ + + + + + Sbjct: 91 NIFELDAASNNSVENIKTLMEQTQIPPQTGRYKVFIIDEVHMLSTSAFNAFLKTLEEPPA 150 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQK 163 + I I+ EK + I Y ++ + + I+ Sbjct: 151 HVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVPETIDHLKKVADQEGI 198 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 S +EA I+ G + + +++SYC IT Q V + + II+ Sbjct: 199 SYEEEALGIIAEKADGGMRDALSIFDQVASYC--QGNITFQKVLEDLNVLDAENYFHIID 256 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 I+ K+ + ++L + +A + L++G Sbjct: 257 LAIENKVSDIMVLVNRIIAKGFDAGNLINGLASH 290 >gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 415 Score = 41.1 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 145 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 322 SNSAMSAIDSALSDIR 337 >gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens ISM] Length = 620 Score = 41.1 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ Q IS +A ++ G + + L + T + Sbjct: 190 EPEVMIALLRRIADAEQAQISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTAEQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 248 VRAMLGLADRGRVLDLFDLILKGDAAGALTEISTQYADGADPLAVLRDL 296 >gi|227549178|ref|ZP_03979227.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium lipophiloflavum DSM 44291] gi|227078738|gb|EEI16701.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium lipophiloflavum DSM 44291] Length = 449 Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 12/126 (9%) Query: 144 PDNKIHLM--DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 P++ ++ +++E + G K++ A++ L+ GGD + L+ + ++ I Sbjct: 182 PEDIGDVIDRAMVDERGVGGDKTLEPAAREQLVLLAGGDARRALTYLEAAAEAVDDNGAI 241 Query: 202 TEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 T + V+D + D H I I + + A+ + + + Sbjct: 242 TVEVVRDNVNRAIVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMIEAGEDPRFIA 301 Query: 252 HGFLQK 257 + Sbjct: 302 RRLVIH 307 >gi|166154268|ref|YP_001654386.1| hypothetical protein CTL0303 [Chlamydia trachomatis 434/Bu] gi|166155143|ref|YP_001653398.1| hypothetical protein CTLon_0298 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335518|ref|ZP_07223762.1| hypothetical protein CtraL_01765 [Chlamydia trachomatis L2tet1] gi|165930256|emb|CAP03742.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931131|emb|CAP06696.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 314 Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + I ++ + + + ++ +A ++ A L ++ Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 A+L+ ++ L + + E S +I + Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280 >gi|289424444|ref|ZP_06426227.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] gi|289155141|gb|EFD03823.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes SK187] Length = 967 Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 21/193 (10%), Positives = 57/193 (29%), Gaps = 18/193 (9%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 299 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 357 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 358 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 409 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + + +I P + L + + + + + R Sbjct: 410 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 466 Query: 327 E---KNIIFQTIL 336 + + + +L Sbjct: 467 RLHLELMCSRILL 479 >gi|255019295|ref|ZP_05291421.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL F2-515] Length = 135 Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + +++ I I A+ + L K +L +F+LL ++ ++ Sbjct: 1 LVVRSLEQNXFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLKLL- 59 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 E S ++ K + + P + + + + + + + + L ++ + Sbjct: 60 EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMK 110 >gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754] gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754] Length = 427 Score = 41.1 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 157 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 216 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 217 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 276 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 277 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 333 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 334 SNSAMSAIDSALSDIR 349 >gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50] gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus N315] gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu3] gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117] gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MR1] gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus Mu50] gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117] Length = 424 Score = 40.7 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA177] Length = 415 Score = 40.7 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 145 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 322 SNSAMSAIDSALSDIR 337 >gi|294155588|ref|YP_003559972.1| DNA polymerase III, delta subunit [Mycoplasma crocodyli MP145] gi|291600514|gb|ADE20010.1| DNA polymerase III, delta subunit [Mycoplasma crocodyli MP145] Length = 312 Score = 40.7 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 110/327 (33%), Gaps = 34/327 (10%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 + G+++ + I ++K N S F+++ +I ++S SL + Sbjct: 1 MIFISGTEQYFVNSEIQRYKANFS-----QFNILKFEEP---CDIKNIVENMSSISLLQE 52 Query: 83 KKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-- 133 K++ + + + K ++ + N I S E N+ Sbjct: 53 KRLFIFPEFYLFSKKETDFSKEEKSFVTLLGSDNYNEYIFTYSKEKITKNSFSDYVVTTS 112 Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK-EAKQILLANLGGDRIASRNELQKL 191 AI +I++ + +I+ +A L L + +EL+KL Sbjct: 113 IHKEAKAI-----KSSDYPKVIKQIVNDNNGTITIFDAL-YLSQKLPNNLELVVSELKKL 166 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY-NAIMLADFFLASKMPSHAL 250 S E++ IT+ + + D + +N+ + A + Sbjct: 167 LS---ENLNITKDIIDCSVGDYGLDDQFSFLNSIPTKNFAFIYKKYIERKTAGDTTLSLI 223 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 +L I + S I +II NI + +E + + + + E + Sbjct: 224 GQVA--NLFILANKVINFKKSQIPTNEIIDAL--NIHQFRFKKAEELINQFGQKSIMEII 279 Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILY 337 +K+ ++ ++ I F+ L+ Sbjct: 280 YKLSQIDLDIKRTGVNDE-IAFEIFLF 305 >gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris aestuarii DSM 271] gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris aestuarii DSM 271] Length = 617 Score = 40.7 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 66/206 (32%), Gaps = 27/206 (13%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + + + + + I I + E+ K T+ ++F I + + Sbjct: 142 AAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQRFNFKR-IP-----IGEIQSQL 195 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIIC 211 + IS +A ++ G +++ L ++ ++ + + I Q V +++ Sbjct: 196 QMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGNDAEKVIAYQGVAELLN 255 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI------- 264 ++ +A + + +A F + + L ++ F+ + Sbjct: 256 YIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTR 315 Query: 265 ----------HIIKECSNISFEKIIQ 280 + +S ++Q Sbjct: 316 LIERTESVKERYQQSAGGLSAPLVMQ 341 >gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus COL] gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. Newman] gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 132] gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL] gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20] gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS01] gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131] gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21189] Length = 424 Score = 40.7 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans SI85-9A1] Length = 639 Score = 40.7 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 61/197 (30%), Gaps = 13/197 (6%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 LM + + + ++A +++ G + + + +T Q Sbjct: 200 ESATLMAHLTKIATAEHVEVDEDALRLIARAAEGSVRDALSLTDQAI--AHGAGAVTAQA 257 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ + I ++ ++G A+ +L L+ + Sbjct: 258 VRDMLGLADRVRIIDLFEYLMKGDAAAALKELRDQYVVGADPAVVLADLADFTHLVTTLR 317 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + + ++ E+ + K ++ ++W + + R Sbjct: 318 FVPDAAEDAALSPME-AERGLEFSKSLSIRTLGQVWQM---------LLKALEETRNANA 367 Query: 326 LEKNIIFQTILYIAQTA 342 + ++ IA A Sbjct: 368 PRQA-AEMALIRIAHAA 383 >gi|256004179|ref|ZP_05429163.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281419179|ref|ZP_06250196.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|255991927|gb|EEU02025.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 2360] gi|281407328|gb|EFB37589.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum JW20] gi|316941749|gb|ADU75783.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum DSM 1313] Length = 547 Score = 40.7 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 72/218 (33%), Gaps = 24/218 (11%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ ++A +I +E+ T ++ K+ +I+ + + L + + + Sbjct: 89 DVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPA 148 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQK 163 + I I+ E I C + ++ IE Sbjct: 149 HVIFIL------------ATTEPHKLPATILSRCQRFDFRRIPVDSIVKRIEYIAKESGV 196 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 I +EA +++ G + + L + L +T + V ++ +I E+++ Sbjct: 197 EIRREASKLIAKLSDGALRDAISILDQCI--SLGSKELTYEDVLSVVGLVTDTFIAEVVD 254 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 A ++ + D + + + ++ L Sbjct: 255 AIKNKEVGRVLNAVDELVMEGKNIGQFVSELVMYYRNL 292 >gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM 13514] Length = 322 Score = 40.7 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 39/232 (16%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 +I E + +F + + PF LV+L+ + + S + + ++I+ + Sbjct: 82 NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEMYAQ 130 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151 +T +L II+ I + ++I+ + + K ++ Sbjct: 131 NTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARL--------------------- 169 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 I + IS +A + + GD R + L ITE+ V + Sbjct: 170 RYIAD---NEGVKISDDALEAIYEFTQGDM---RRAINALQIAATTGKEITEETVAKALG 223 Query: 212 DTHVLYIEEIINATIQGKI-YNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + E +N +G A + F + + ++ ++ L+ Sbjct: 224 MVSPRLLRETLNDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKLD 275 >gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum ATCC 27405] gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium thermocellum ATCC 27405] Length = 547 Score = 40.7 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 72/218 (33%), Gaps = 24/218 (11%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110 ++ ++A +I +E+ T ++ K+ +I+ + + L + + + Sbjct: 89 DVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPA 148 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQK 163 + I I+ E I C + ++ IE Sbjct: 149 HVIFIL------------ATTEPHKLPATILSRCQRFDFRRIPVDSIVKRIEYIAKESGV 196 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 I +EA +++ G + + L + L +T + V ++ +I E+++ Sbjct: 197 EIRREASKLIAKLSDGALRDAISILDQCI--SLGSKELTYEDVLSVVGLVTDTFIAEVVD 254 Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 A ++ + D + + + ++ L Sbjct: 255 AIKNKEVGRVLNAVDELVMEGKNIGQFVSELVMYYRNL 292 >gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603] gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603] Length = 423 Score = 40.7 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 24/168 (14%) Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDIL 200 D++ L E + +A GD ++ N L+ Sbjct: 165 EDDQRGLKSYTPE--------VDDDAMTYFSTQSQGDVRSALNALELAVLSATEEDGQRH 216 Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 IT Q KD + D H + + + A+ + + + Sbjct: 217 ITLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIV 276 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + E + + + IQ E+ P R L +++ Sbjct: 277 RRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 321 >gi|170749547|ref|YP_001755807.1| DNA polymerase III, subunits gamma and tau [Methylobacterium radiotolerans JCM 2831] gi|170656069|gb|ACB25124.1| DNA polymerase III, subunits gamma and tau [Methylobacterium radiotolerans JCM 2831] Length = 637 Score = 40.7 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 56/171 (32%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + ++ EA ++ G + + L + IT Q Sbjct: 209 EAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGSVRDALSLLDQAI--AHGAGTITAQS 266 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G + A S +L L+ ++ Sbjct: 267 VRDMLGLADRARILDLFEAVMRGSVPAAFAELRAQYDSGADPSVVLSDLAAFTHLVTRLK 326 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ E + ++ + ++ R W ++ + + ++ Sbjct: 327 VVPEAAADPTLSETERVR-GAAFADKLSIRALSRAW--QILLKAIPEVQAA 374 >gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM 14429] Length = 435 Score = 40.7 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 19/197 (9%) Query: 53 FSLVVLNALEIQKNI---STFWNEINSTSLFSKK-KIILIENLST-----EKKVLDCLEE 103 + ++ LNA +++ + SLF K +IIL + + ++ L + E Sbjct: 69 YEVLELNASDVRTGERIRQVMGGSMKMGSLFGFKGRIILFDEVDGLNVREDRGGLAAIVE 128 Query: 104 IIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 +I ++ II+ +N + R E I P ++ ++ ++ Sbjct: 129 LIRESTW--PIIMTANN-PWDPKFR---ELRDEAEVIQLKPLDEDDILTILRRICNAEGI 182 Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 ++A +++ + GGD R + L + ++T+ V + H + +I++ Sbjct: 183 KCEEDALKLIAESSGGD---VRAAINDLQAAAEGKKVLTKDDVT-VTERAHQFDMFKILD 238 Query: 224 ATIQGKIYNAIMLADFF 240 + + F Sbjct: 239 KVFHARRFEEARSVTFL 255 >gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str. Toulouse] gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse] Length = 640 Score = 40.7 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 63/202 (31%), Gaps = 9/202 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + +A ++ G + + + +Y + I+ Sbjct: 190 ETAVLSAHLCQIAKHENVKVEDQALSMIARAAEGSARDALSIFDQAIAYS--NGNISAVA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G I NA+ + +L L+ ++ Sbjct: 248 VRALLGLVDQARIIDLFEFIMKGDIVNALHELRSQYDAGADPLTILTELADFNHLVTRLR 307 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319 E + ++ + ++ K+ + R W V ET + + L Sbjct: 308 FTPEIAEDLSLTEVEHSR-SLDFSKKLSVPVLSRNWQMLLKGLQEVSETTRPLQAAEMLL 366 Query: 320 ARKKKYLEKNIIFQTILYIAQT 341 R + + + + + Q Sbjct: 367 IRLAYTADLPTLDEALKKLTQE 388 >gi|237717564|ref|ZP_04548045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229453150|gb|EEO58941.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 171 Score = 40.7 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 8/172 (4%) Query: 172 ILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 +L +G D EL+KL +T + ++ I + E+ +A ++ I Sbjct: 1 MLADFVGSDLSRLTGELEKLIITLPAGQKRVTPEQIEKNIGISKDYNNFELRSALVEKDI 60 Query: 231 YNAIMLADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289 A + +F + K + L F + + + Sbjct: 61 LKANKIIKYFEENPKTNPIQMTLSLLFSFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQ 118 Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338 R+ + ++R ++ + + +I + ++ + + +I+ + + I Sbjct: 119 ARDYMA-AMRKYSGVKTMQIVGEIRYADAKSKGVQNSSMTDGDILRELVFKI 169 >gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi BJ001] Length = 623 Score = 40.7 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 51/172 (29%), Gaps = 7/172 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +++ EA + G + + L + +T Sbjct: 212 EADVLSAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVTAAG 269 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G I A + +L L+ ++ Sbjct: 270 VRDMLGLADRSRIVDLFEAAMRGDIPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 329 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESL-RIWNKNLVRETLHKIDHR 316 ++ ++ + + +L R W ++ + L ++ Sbjct: 330 LVPGAEADPTLSEAERVRGAQFAGRLPV--RALSRAW--QILLKALPEVQAA 377 >gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis VCU121] Length = 423 Score = 40.7 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 17/165 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITE 203 L D + L + +A GD ++ N L+ IT Sbjct: 161 NRALED-EDRGLNAYSPKVDDDAMTYFSTQSQGDVRSALNALELAVLSASEEDGQRHITL 219 Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Q KD + D H + + + A+ + + + Sbjct: 220 QDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRL 279 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + E + + + IQ E+ P R L +++ Sbjct: 280 LVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 321 >gi|16117302|dbj|BAB16725.2| hypothetical protein [Macaca fascicularis] Length = 596 Score = 40.7 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 43 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 94 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 95 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 146 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 147 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 206 Query: 310 LHKI 313 + K+ Sbjct: 207 MRKL 210 >gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] Length = 423 Score = 40.7 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 25/178 (14%) Query: 141 SCYPDNKI-HLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSY 194 D+ L I + S + ++A + GD ++ N L+ Sbjct: 150 PLNQDDIRLALDRAIND--KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLS 207 Query: 195 CL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + IT KD + D H + + + A+ Sbjct: 208 AHIDEQNERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARL 267 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + + + E + + + IQ E+ P R L +++ Sbjct: 268 IEAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322 >gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224] gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224] Length = 424 Score = 40.7 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD + N L+ D Sbjct: 154 EDVRQALTRAIEDDENGLKTYQSKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 562 Score = 40.7 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 50/143 (34%), Gaps = 13/143 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299 Query: 260 LLEKI--HIIKECSNISFEKIIQ 280 LE++ ++ + + +Q Sbjct: 300 QLERMLERVMVDEQFRMLSEEMQ 322 >gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax SaI-1] gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax] Length = 330 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 26/174 (14%) Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAI------------------SCYPDNK 147 +++ +++ + ++ + LR+I E +++V SCY Sbjct: 111 PPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQG 170 Query: 148 IHLMDLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 I + ++ L +I +A ++ GD R + L D +IT + Sbjct: 171 IPINIKKDKLLYICKSEGINILDDALDKIIETTQGD---LRRAVSILQLCSCIDPMITLE 227 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 V D+ I +II+A + N + + F Sbjct: 228 SVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYF 281 >gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325] Length = 566 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 88/248 (35%), Gaps = 32/248 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST----- 77 ++FYG + F + ++ + ++ +EI + +E+ Sbjct: 39 AYLFYGPRGTGKTSIAKIFAN--EVNKNEVYQKENVDIIEIDAASNNGVDEVRDIKEAIK 96 Query: 78 --SLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 K K+ +I+ + + L + + + + I I+ E Sbjct: 97 FLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL------------ATTEIH 144 Query: 135 TSVLAI--SCYPDNKIHLM-DLIEESLL----IGQKSISKEAKQILLANLGGDRIASRNE 187 I C +L + +E+ L + I ++A + + G + + Sbjct: 145 KIPATILSRCQRFEFKNLSVEQLEDRLKYISENERLDIEEDAIKKIATLAKGGLRDAISI 204 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 L ++S+Y IT +++ ++ I E +QG + ++++ + F+A + Sbjct: 205 LDQVSNYS---EKITLENILEVTSSISEDSILEFYKYLLQGDVTKSLLMYNDFVAQAKDT 261 Query: 248 HALLHGFL 255 LL+ + Sbjct: 262 KLLLNDLI 269 >gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763] gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763] Length = 391 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD + N L+ D Sbjct: 121 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 180 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 181 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 240 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 241 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 297 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 298 SNSAMSAIDSALSDIR 313 >gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1] gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication factor C4 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 309 Score = 40.7 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 74/205 (36%), Gaps = 19/205 (9%) Query: 62 EIQKNISTFWNEI-NSTSLFSKKKI------ILIENLSTE--KKVLDCLEEIIIKNICNH 112 E+ + + + + F+++++ I+I + + + ++ + Sbjct: 68 ELNASDERGIDTVRTTIKSFAQRRVKDCEFKIIILDEADSMTTTAQQAMRRVMEIHSSEC 127 Query: 113 IIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 I+ N KI E + + + ++ ++E I+ EA Sbjct: 128 RFILIC------NVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALD 181 Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231 +++ GD S N LQ + + + ++ II IE+++ ++ ++ Sbjct: 182 LVVELSDGDMRQSLNILQACIN---SPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVE 238 Query: 232 NAIMLADFFLASKMPSHALLHGFLQ 256 A+ + D K L++ F + Sbjct: 239 EALEMFDEIWEEKFDPLDLINSFFR 263 >gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gamma and tau [Nakamurella multipartita DSM 44233] gi|258554122|gb|ACV77064.1| DNA polymerase III, subunits gamma and tau [Nakamurella multipartita DSM 44233] Length = 743 Score = 40.7 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L ++E + +++ GG + + L +L + + +T + + Sbjct: 184 LRTMLERLCEQEGAVVEPAVLPLVIRAGGGSARDTLSMLDQLLAGAGPEG-VTYRSAVAL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++E+++A G + D + + LQ+ + L + + + Sbjct: 243 LGVTDAALLDEVVDALAAGDGGSVFAAVDRVIEAGHDPRRFATDLLQRLRDLVILSAVPD 302 Query: 270 CSNI 273 Sbjct: 303 AGAK 306 >gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC 12228] gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 426 Score = 40.7 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%) Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195 YP ++ + ++ ++ S + ++A + GD ++ N L+ Sbjct: 152 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 211 Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + IT KD + D H + + + A+ + Sbjct: 212 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 271 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + + E + + + IQ E+ P R L +++ Sbjct: 272 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 325 >gi|322382239|ref|ZP_08056152.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153820|gb|EFX46188.1| DNA polymerase III subunits gamma and tau-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 559 Score = 40.7 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 2/113 (1%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + EA + G + + L + SSY IT V + Sbjct: 174 KQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAAGS--ITVADVVAMTGGLASEQF 231 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 E + + + + ++ + D F+ + + + F+ L + ++ E + Sbjct: 232 ERLARSVKEKDLGTSLEIIDSFMQEGKSADKCMESLILYFRDLLMVRLVPESA 284 >gi|300118105|ref|ZP_07055853.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] gi|298724416|gb|EFI65110.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1] Length = 536 Score = 40.7 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L +I+ I+ EA ++ G + + + ++ +Y + +T +HV Sbjct: 182 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 ++ + IE++I+ + + + + L K L Sbjct: 240 AIVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283 >gi|207108595|ref|ZP_03242757.1| DNA polymerase III subunit delta [Helicobacter pylori HPKX_438_CA4C1] Length = 238 Score = 40.3 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 21/223 (9%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 YG I I D + + + + I+T + SLF Sbjct: 16 KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72 Query: 82 KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129 +++++ + + KK + L ++ ++ +II K + T + K Sbjct: 73 GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSEIIVK 132 Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 +K + + + + ++E IS L D S N Sbjct: 133 FFQKSPLKDEAICVRFFMPKTWESLKFLQERANFLHLDISSHLLNALFETNNEDLGVSFN 192 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 +L KL+ IT + ++++ + + ++++I K Sbjct: 193 DLDKLAVL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK 232 >gi|328951662|ref|YP_004368997.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] gi|328451986|gb|AEB12887.1| DNA polymerase III, subunits gamma and tau [Marinithermus hydrothermalis DSM 14884] Length = 563 Score = 40.3 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 42/140 (30%), Gaps = 5/140 (3%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + +++ I+ EA ++ G + + L +L L +T Sbjct: 177 TEEEIAGKLQQITRAEGLEIAPEALALVARMADGAMRDAESILDRLL--ALGKNPVTLAD 234 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + + I+++ A +G I A+ A + L + + Sbjct: 235 AEAALGLPPQHRIQQLAEALARGAIEQALAEARQLYREGYSARTLTEQVAEALRSGLYAR 294 Query: 266 IIKECS---NISFEKIIQKT 282 + + ++I Sbjct: 295 LGLGSGPDLAANEAQVIAAL 314 >gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040] Length = 608 Score = 40.3 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ Q I+ +A ++ G + + L + T Sbjct: 198 EPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 255 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 256 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDL 304 >gi|253317220|ref|ZP_04840433.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 361 Score = 40.3 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD ++ N L+ D Sbjct: 91 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 150 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 151 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 210 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 211 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 267 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 268 SNSAMSAIDSALSDIR 283 >gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis RP62A] gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A] gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis VCU045] gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis VCU028] Length = 423 Score = 40.3 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%) Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195 YP ++ + ++ ++ S + ++A + GD ++ N L+ Sbjct: 149 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 208 Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + IT KD + D H + + + A+ + Sbjct: 209 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 268 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + + E + + + IQ E+ P R L +++ Sbjct: 269 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322 >gi|291296760|ref|YP_003508158.1| DNA polymerase III subunit delta [Meiothermus ruber DSM 1279] gi|290471719|gb|ADD29138.1| DNA polymerase III, delta subunit [Meiothermus ruber DSM 1279] Length = 312 Score = 40.3 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 A EL+KL IT + V+ ++ + +++ + +GK A +A L Sbjct: 153 ALDQELRKLCL---ASPPITLEKVQALVALDTPISGFDLVRSITEGKATQAFKVARELLE 209 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 +L ++ + + + + + E + Sbjct: 210 RGEDPLRILGALSWQYVRVARAWALLQDDPLMGEGVAASA 249 >gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH9] gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH1] gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102] gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819] gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796] gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus JH9] gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102] gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction resolvase [Staphylococcus aureus 04-02981] gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819] gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796] gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS03] gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21172] Length = 424 Score = 40.3 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE+ L Q I ++A GD + N L+ D Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1] gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1] Length = 438 Score = 40.3 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 78/266 (29%), Gaps = 50/266 (18%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG L + + + V EI+ I + +N F K Sbjct: 53 IILYGPPGSGKTTLATIISEMTEANFVK-INAVSAGVAEIRTEIKKARDNLN----FYGK 107 Query: 84 KIIL-------IENLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + I ++ + + +L+ +E+ +I N + + + + ++AE Sbjct: 108 RTIFFIDEIHSLKRGAQQDCLLEAVEKGEVTLIGATTENPYFELN-GALLSRSRIFQLAE 166 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASR 185 + L L++ +L + ++++A + + GGD Sbjct: 167 H------------TEDDLYRLVQRALKDEEQGLGMYRVKLAEDAMKHFIEMSGGDGRNVL 214 Query: 186 NELQKLSSYCL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIY 231 N L+ IT + +D D H I I + Sbjct: 215 NALELAVLSTAPTEDGYRHITLEVAEDSTQQRYIRYDKSGDNHYDVISAFIKSIRGSDPD 274 Query: 232 NAIMLADFFLASKMPSHALLHGFLQK 257 A+ A+ ++ + Sbjct: 275 AALHYYARMTAAGEDPRFIVRRLIVH 300 >gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus epidermidis FRI909] Length = 423 Score = 40.3 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 25/178 (14%) Query: 141 SCYPDNKI-HLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSY 194 D+ L I + S + ++A + GD ++ N L+ Sbjct: 150 PLNQDDIRLALDRAIND--KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLS 207 Query: 195 CL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + IT KD + D H + + + A+ Sbjct: 208 AHIDEQNERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARL 267 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + + + E + + + IQ E+ P R L +++ Sbjct: 268 IEAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322 >gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase t [Pichia pastoris GS115] gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase t [Pichia pastoris GS115] gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Pichia pastoris CBS 7435] Length = 332 Score = 40.3 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 33/272 (12%) Query: 10 IQKSTKNLFLSHFVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQK 65 ++K ++ L H +FYG G ++ K+ Y + ++ LNA + I Sbjct: 36 VRKFVQDGRLPH--LLFYGPPGTGKTSTIMALAKEIYGKNYRN--MVLELNASDDRGISV 91 Query: 66 NISTFWNEINSTSLFS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKK 123 N ++ +FS K+I+++ V L +I K N + Sbjct: 92 VRDQIVNFASTRQIFSNGFKLIILDEADAMTNVAQNALRRVIEKFTKNTRFCV------- 144 Query: 124 NNTLRKIAEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178 L A K L C P ++ + I + + +I +A Q LL Sbjct: 145 ---LANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINIDDDALQSLLKLSK 201 Query: 179 GDRIASRNELQKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 GD + N LQ + + IT + + + IE +++ IQ A Sbjct: 202 GDMRKALNVLQ--ACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDTIIQENWEAAFT 259 Query: 236 LADFF-LASKMPSHALLHGFLQKF--QLLEKI 264 + + L L++GF+ LEK+ Sbjct: 260 IMNRLKLEKGYALIDLVNGFVDILGGYQLEKM 291 >gi|294495084|ref|YP_003541577.1| replication factor C large subunit [Methanohalophilus mahii DSM 5219] gi|292666083|gb|ADE35932.1| replication factor C large subunit [Methanohalophilus mahii DSM 5219] Length = 489 Score = 40.3 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 64/154 (41%), Gaps = 18/154 (11%) Query: 82 KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFT 135 +K++I+++ + S ++ + +I K N II+ +N++ ++TLR + Sbjct: 102 QKRLIILDEADNMHGSADRGGTRAITNVIKK--SNQPIILIANDLYALSSTLR------S 153 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + I P + ++ +++ + + + N GGD R+ ++ L + Sbjct: 154 HCVNIKFNPIPQRSILPALKKICKMEGIMCGTGVLEKIAENTGGD---LRSAIKDLQATA 210 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 + I V DT I +++ +G+ Sbjct: 211 TDKKEIEVADVTTAERDTKE-SIFKVLTKVFKGR 243 >gi|305681162|ref|ZP_07403969.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii ATCC 14266] gi|305659367|gb|EFM48867.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii ATCC 14266] Length = 365 Score = 40.3 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITE 203 + L ++ + I I +A + + G + L+++ Y I Sbjct: 211 DTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHIDL 270 Query: 204 QHVKD--IICDTHVLYIEEIINATIQGKIYN 232 Q V+ I+ D + ++ + A + I Sbjct: 271 QAVRAALIVFDVDAMGLDRLDRAVLTALIKG 301 >gi|225021303|ref|ZP_03710495.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii ATCC 33806] gi|224946036|gb|EEG27245.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii ATCC 33806] Length = 365 Score = 40.3 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITE 203 + L ++ + I I +A + + G + L+++ Y I Sbjct: 211 DTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHIDL 270 Query: 204 QHVKD--IICDTHVLYIEEIINATIQGKIYN 232 Q V+ I+ D + ++ + A + I Sbjct: 271 QAVRAALIVFDVDAMGLDRLDRAVLTALIKG 301 >gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis VCU144] Length = 423 Score = 40.3 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%) Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195 YP ++ + ++ ++ S + ++A + GD ++ N L+ Sbjct: 149 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 208 Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + IT KD + D H + + + A+ + Sbjct: 209 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 268 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + + + E + + + IQ E+ P R L +++ Sbjct: 269 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322 >gi|314959377|gb|EFT03479.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL002PA1] Length = 948 Score = 40.3 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 12/203 (5%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L D ++ + + Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L I+ Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLV---IVSA 395 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE-- 327 + +I + P + L + + + + + R Sbjct: 396 GPDACRSGLID-----VSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAPRLH 450 Query: 328 -KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 451 LELMCSRILLPGADTDGRGIHAR 473 >gi|325092542|gb|EGC45852.1| ran-binding protein [Ajellomyces capsulatus H88] Length = 883 Score = 40.3 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%) Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138 F + + + + KK + N + + + + L AE + T++ Sbjct: 499 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 555 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + PD + +L+ + L G E + + + A +N + YC Sbjct: 556 NLHSSPDESTFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 610 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 E+ V I ++I A + G I A+ + A+ + + Sbjct: 611 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 660 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283 KF +E + E IS Q Sbjct: 661 KF--IEMMRRCTEPQPISPSTSKQAAR 685 >gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus JCSC1435] gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 422 Score = 40.3 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 18/190 (9%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITE 203 L D + L + ++A + GD ++ N L+ E IT Sbjct: 161 NRALNDS-QRGLANYHPKVDEDALEYFATQSQGDVRSALNALELAVLSASVENEIRHITL 219 Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 Q KD + D H + + + A+ + + + Sbjct: 220 QDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRL 279 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHK 312 + + E + + + IQ E+ P R L +++ + + Sbjct: 280 LVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAVIELSLSPKSNSAITA 336 Query: 313 IDHRIHLARK 322 ID + RK Sbjct: 337 IDSALSDIRK 346 >gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] Length = 438 Score = 40.3 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 41/259 (15%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 IFYG G K I+ T F + + + ++ K+ Sbjct: 55 VIFYGP-PGTGK---TTLAKVIANTTSAEFKQINATVAGKKDMEEVVKEAKDMQGMYGKR 110 Query: 84 KIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLR-KIAEK 133 I+ I+ N + +L +E+ +I N + + ++ K EK Sbjct: 111 TILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALLSRSAVFELKPLEK 170 Query: 134 FTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 D KI L +E+ L I +EA + L GGD ++ N ++ Sbjct: 171 ----------EDIKILLRRAVEDEEKGLGSFGAKIEEEALEFLADMSGGDARSALNAIEL 220 Query: 191 LSSYCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIML 236 IT + + I D H I I + A+ Sbjct: 221 GVLTTERSEDGIIHITLETASECIQKRVVNYDKKGDNHYDIISAFIKSMRGSDPDAAVFY 280 Query: 237 ADFFLASKMPSHALLHGFL 255 L + + + Sbjct: 281 LAKMLYAGEDVKFIARRIM 299 >gi|55378501|ref|YP_136351.1| replication factor C large subunit [Haloarcula marismortui ATCC 43049] gi|57013000|sp|Q5V1F7|RFCL_HALMA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|55231226|gb|AAV46645.1| replication factor C large subunit [Haloarcula marismortui ATCC 43049] Length = 508 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 71/245 (28%), Gaps = 26/245 (10%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYG-SDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ ++K + I YG G ++ P + + Sbjct: 20 KARDALKKWAETWDDHREAVILYGSPGIGK-----TSAAHALANDMEWPTIELNASDSRT 74 Query: 64 QKNISTFWNEINSTSLF----SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIII 115 + I+ E + +++++++ + ++K +I+ Sbjct: 75 KDVINRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMIL 134 Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 I + + +N LR + I + ++ ++ + +A Q L Sbjct: 135 IANEYYEMSNGLRN------NCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAE 188 Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI--QGKIYNA 233 + R ++ L + +T V DT I E ++ + G Sbjct: 189 ---QNSGGLRGAVKDLQAIAETTERLTADDVVTGERDTTE-GIFEYLDVVLKEAGAQDAL 244 Query: 234 IMLAD 238 D Sbjct: 245 EASYD 249 >gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 476 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 18/182 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +++ +A GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 215 EKGLGEYAVTVTDDALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H + + + A+ + + ++ L Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331 Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319 E I + + I+ E+ P R + + + +D + Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALQD 391 Query: 320 AR 321 R Sbjct: 392 LR 393 >gi|167465485|ref|ZP_02330574.1| DNA polymerase III gamma and tau subunits [Paenibacillus larvae subsp. larvae BRL-230010] Length = 510 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 2/113 (1%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + EA + G + + L + SSY IT V + Sbjct: 125 KQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAAGS--ITVADVVAMTGGLASEQF 182 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 E + + + + ++ + D F+ + + + F+ L + ++ E + Sbjct: 183 ERLARSVKEKDLGTSLEIIDSFMQEGKSADKCMESLILYFRDLLMVRLVPESA 235 >gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum ATCC 11170] gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170] Length = 659 Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 2/137 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L + I+ A ++ G + L + ++E V Sbjct: 220 AAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAI--AHGGGTVSEAQV 277 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 +++ I ++++A + G+I ++ L D A ++ L + ++ + Sbjct: 278 AEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLVHWMTRVKV 337 Query: 267 IKECSNISFEKIIQKTE 283 + + + ++T Sbjct: 338 VPVSAEDAAVPEAERTR 354 >gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus anaerobius 653-L] Length = 569 Score = 40.3 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 21/174 (12%) Query: 150 LMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L L+++ IS +A +++ N G S + L K S+ + I+ + V Sbjct: 178 LDTLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSFS--NGPISMEEV 235 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 D++ + + + I+ + ++ L D + L+ F+ + + I Sbjct: 236 LDLLGAAAPGQLISLSESIIESDVARSMKLVDDYFMWGKDIRLLVEDLTSVFRSMMMMKI 295 Query: 267 IKECSNISFEKIIQKTEKNIIPM---KRNILQESLRIWNKNLVRETLHKIDHRI 317 E ++ + + +L++S + + + L+ + I Sbjct: 296 FNEADSV------------VEFNEEYRNKLLEKS-KSVDTEEIIRILNLLSEAI 336 >gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H] gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi strain H] Length = 330 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 26/174 (14%) Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAI------------------SCYPDNK 147 +++ +++ + ++ + LR+I E +++V SCY Sbjct: 111 PPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQG 170 Query: 148 IHLMDLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 I + E+ L +I +A ++ GD R + L D +IT + Sbjct: 171 IPIDVKKEKLLYICKSEGINILDDALDKIIETTQGD---LRRAVSILQLCSCIDPMITLE 227 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 V D+ I +II+A + N + + F Sbjct: 228 SVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYF 281 >gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis NCFD 2020] Length = 558 Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 21/186 (11%), Positives = 55/186 (29%), Gaps = 5/186 (2%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + + L + +EA ++ G + + L + + D IT + Sbjct: 180 KDIKAHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILDQ-ALSLSPDDQITLSIAE 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +I +L +++ + I + A+ + + L F+ L + Sbjct: 239 EITGSISILALDDYVANIINQEAQAALSNLETIFDNGKSMSRFATDLLAYFRELLMVQSG 298 Query: 268 KECSNISFEKIIQKTEK-NIIPMKRNILQES---LRIWNKNLVRETLHKIDHRIHLARKK 323 E S + I I+ + ++ + + + I+ + Sbjct: 299 AESSYQTEHFADNLAVPRETIFQMIAIITKHVPEIKRGSHPRIYAEMMTIELAHLSPVQN 358 Query: 324 KYLEKN 329 + N Sbjct: 359 SASDDN 364 >gi|332980764|ref|YP_004462205.1| DNA polymerase III subunits gamma and tau [Mahella australiensis 50-1 BON] gi|332698442|gb|AEE95383.1| DNA polymerase III, subunits gamma and tau [Mahella australiensis 50-1 BON] Length = 549 Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + +++ + L EA Q++ + G + + L + S+C D I V Sbjct: 180 EQDMVERMRVILTATGAHAEDEALQLIARSAQGAMRDALSMLDQALSFC--DGNIGYTDV 237 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 D++ + ++ +++A I G A+ L D + AL+ + L + Sbjct: 238 LDMLGASGTDFVAGLVDAVIAGDDGGALSLIDQAVDQGRDLTALVREIAWYVRDLMIVKS 297 Query: 267 IKECSNI 273 ++ + Sbjct: 298 CRQPETM 304 >gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length = 453 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 11/145 (7%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII- 210 +I+ L G S+S EA + L+A GGD + L+ + +I V+ I Sbjct: 188 AVIDPRGLNGAVSLSDEAARHLVAVAGGDARRALTALEASADATEAGGVIEVADVEAAID 247 Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 D H I + + A+ +++ + + Sbjct: 248 RAAVRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMISAGEDPRFIARRLMIHASED 307 Query: 262 EKIHIIKECSN-ISFEKIIQKTEKN 285 + ++ +++Q Sbjct: 308 IGMADPMALQTAVAAAQVVQMVGMP 332 >gi|76788760|ref|YP_327846.1| hypothetical protein CTA_0051 [Chlamydia trachomatis A/HAR-13] gi|237802482|ref|YP_002887676.1| hypothetical protein JALI_0461 [Chlamydia trachomatis B/Jali20/OT] gi|237804397|ref|YP_002888551.1| hypothetical protein CTB_0461 [Chlamydia trachomatis B/TZ1A828/OT] gi|76167290|gb|AAX50298.1| hypothetical protein CTA_0051 [Chlamydia trachomatis A/HAR-13] gi|231272697|emb|CAX09600.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273716|emb|CAX10494.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] Length = 314 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +E QKL + I ++ + + + ++ +A ++ A L ++ Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 + FL+ Q L + + E S +I + Sbjct: 242 EEPLAILSFLRS-QYLLGLRAVAEQSKERKTQIFIAAGEP 280 >gi|302039032|ref|YP_003799354.1| hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607096|emb|CBK43429.1| Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 504 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 25/157 (15%) Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH-----ALLHGFLQKFQ 259 HV + I D +E + + A ++ + Q Sbjct: 108 HVIETIVDVTKRKQDEQSL-----RQSQKMEALGRLAAGIAHDFNNLLMVVIGHAQRVAQ 162 Query: 260 LL--EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR- 316 L H E + + T+K + +R +L++ R N + + I R Sbjct: 163 QLGSHPCHHEVEMIGQAGSRAAALTKKLLTFSRRQVLEQ--RDVPLNTLIRDMEDILRRL 220 Query: 317 ---------IHLARKKKYLEKNI-IFQTILYIAQTAC 343 + ++ L + I Q +L +A A Sbjct: 221 IGEQIQTVIVLDSKAGHVLGDPVQIEQVLLNLALNAR 257 >gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030] gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030] Length = 448 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 19/127 (14%) Query: 147 KIHLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDIL 200 + +++ ++ ++ EA++ L+ GGD +R L L + D Sbjct: 184 DADIASVVDRAVSSERGLNGSVTLEPEAREQLVTLAGGD---ARRALTYLEAAAEGADGT 240 Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 IT V + D H I I + + A+ + + + Sbjct: 241 ITADVVSRSVDRAVVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMIEAGEDPRFI 300 Query: 251 LHGFLQK 257 + Sbjct: 301 ARRLVIH 307 >gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens BL2] Length = 1148 Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L + +E+ ++K +++ GG + + L +L + D + Sbjct: 182 EALGNYMEDLCNREGVQVAKGVLPLVVRAGGGSVRDTLSVLDQLIAGSGPDG-VDYAGAI 240 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIH 265 ++ T + +I++A G + + S ++F LLE++ Sbjct: 241 ALLGYTPDSLLSDIVDAFSAGDGGGVYRAVERVIESGQDP--------RRFVEDLLERMR 292 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH--RIHLARKK 323 + + + + + P + L R + + + ++ Sbjct: 293 DLIVIN--AAPEAAHAFLPEVPPDRLERLTLQARGFGQGELSRAADLLNQGLTEMSGATS 350 Query: 324 KYLE-KNIIFQTIL 336 L+ + I + +L Sbjct: 351 PRLQLELICARILL 364 >gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864] Length = 347 Score = 40.0 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 45/174 (25%), Gaps = 24/174 (13%) Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEK---------------------FTSVLAISCYP 144 II+ +++ + + + LR++ E + P Sbjct: 124 PPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKP 183 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 + L + + I A L A GGD + L + IT Sbjct: 184 LDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAIT-LMQCCFRLNGSDPITAD 242 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 V I ++ G AS + +L ++F Sbjct: 243 DVVAAAGVVPDDMIRKLWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQF 296 >gi|148266337|ref|YP_001233043.1| DNA polymerase III, subunits gamma and tau [Geobacter uraniireducens Rf4] gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4] Length = 579 Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 ++D + + Q S+S +A ++ G S + L ++ ++C + +T++ V Sbjct: 181 QKIVDRLRYIVDQEQVSVSDKALAVVARKGDGSMRDSLSTLDQVLAFCGQ--TVTDEDVA 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ + E + A+ + + + F+ + + + Sbjct: 239 GLLGVVDRRLLLEASQSIFARDSRAALEIVKRVDSFGYNMRQFCQELIDHFRNITILRTV 298 Query: 268 KECSNI 273 + ++I Sbjct: 299 VDAADI 304 >gi|5262681|emb|CAB45771.1| hypothetical protein [Homo sapiens] Length = 697 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 56 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 107 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 108 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 159 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 160 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 219 Query: 310 LHKI 313 + K+ Sbjct: 220 MRKL 223 >gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis HTCC2503] Length = 607 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL--SSYCLEDILITE 203 + L + + +ISKEA ++ G + R+ L L + I Sbjct: 194 DITSLSAHLAGIAEKEEAAISKEALDMIAQAAEG---SVRDALSLLDQALVQKAGEAIGA 250 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 ++D++ +++ A + G A+ L + ++ L LL + Sbjct: 251 ADIRDMLGLVDRTQTWDLLGAAMAGDAKTALRLFREQYDGGADAGQVMRDLLSLTHLLTR 310 Query: 264 IHI---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + E ++ + + L R W+ + + L ++ + Sbjct: 311 TLVAGDEAAAHGQAGEADTERAQAMAHGVPLPALT---RSWSL--LMKALEEVQNA 361 >gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF 19.5.1] Length = 503 Score = 40.0 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 98/266 (36%), Gaps = 31/266 (11%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNI 67 ++K+ +N ++H +IF+G K ++ HD + + + N Sbjct: 29 VLKKAIENQSIAH-AYIFFGPRGTGKTTTARILAKALNCLSHDDKPCGKCESCIAVDNNS 87 Query: 68 STFWNEINSTSLFSKKKIILIENLST-------------------EKKVLDCLEEIIIKN 108 EI++ S +I I + ++ ++ + L + + + Sbjct: 88 HMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHYKVYIVDEFHMLTREAFNALLKTLEEP 147 Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167 + + I+ L K+ E + + P ++ +++ ++ L +K+ + Sbjct: 148 PEHIVFIL------ATTNLEKVPETILSRCQVFTFKPLSEGQIVEYLQRILKEEKKTYTV 201 Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 EA +I+ G + N L++ + I E +VK+I+ Y++ + A + Sbjct: 202 EALKIIAKAAKGGMRDAVNLLERALVF---GEKIEEDNVKNILGILPEEYLKSYLVAILN 258 Query: 228 GKIYNAIMLADFFLASKMPSHALLHG 253 G I L++ +++ Sbjct: 259 GDSDEIIALSENIERLGYSHDSVIRQ 284 >gi|257387805|ref|YP_003177578.1| replication factor C large subunit [Halomicrobium mukohataei DSM 12286] gi|257170112|gb|ACV47871.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM 12286] Length = 497 Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 57/153 (37%), Gaps = 18/153 (11%) Query: 81 SKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKF 134 + +++++++ ++ + ++ + N +I+ +NE + +N LR + Sbjct: 97 AGRRLVVMDEADNIHGNADRGGARAITSLVKE--ANQPMILIANEFYEMSNGLRNACDD- 153 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 I K ++ ++ + L + + EA + GD R ++ L + Sbjct: 154 -----IEFRDVGKRSIVPVLRDVLRQEEIAFDDEALTEIAEMNDGD---LRGAIKDLQAL 205 Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 + V DT I + ++ ++ Sbjct: 206 AEGRDHLAADDVVTGERDTTE-GIFDYLDLLLK 237 >gi|74316533|ref|YP_314273.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] gi|74056028|gb|AAZ96468.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans ATCC 25259] Length = 581 Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 19/67 (28%) Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 I V+ ++ Y+ ++++A G + A + A L Sbjct: 235 AYGGGRIEAAAVEAMLGTVRRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDL 294 Query: 255 LQKFQLL 261 L Sbjct: 295 GNLLTQL 301 >gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum CIP 105476] gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP 105476] Length = 646 Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 20/205 (9%), Positives = 65/205 (31%), Gaps = 15/205 (7%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + +A ++ G + + + + ++ Sbjct: 190 EAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAI--AHSNGNVSAAE 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + +A+ + +L L+ ++ Sbjct: 248 VRTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELADFNHLVTRLR 307 Query: 266 ---IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR- 316 I E +++ E+ ++ + K+ + R W V +T + Sbjct: 308 FTPEIVEDFSLTEEQRLRSLD----FSKKLSVPVLSRNWQMLLKGLQEVNQTARPLQATE 363 Query: 317 IHLARKKKYLEKNIIFQTILYIAQT 341 + L R + + + + + Q Sbjct: 364 MLLIRLAHTADLPTLDEALKKLTQE 388 >gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1] gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1] Length = 600 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 44/126 (34%), Gaps = 6/126 (4%) Query: 151 MDLIEESLLI----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 LI++ L +A ++ G +++ + +T + V Sbjct: 195 SGLIKQHLAHIGDLEGVDADSDALAMIARAAEGSMRDAQSIFDQAI--AHSSGKVTAETV 252 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 +D++ + ++ ++G + A+ + A+L + L+ ++ Sbjct: 253 RDMLGLADRARVIDLFEHLMKGDVAAALAEYRAQYDAGADPAAVLTDLAEFNHLVTRMRF 312 Query: 267 IKECSN 272 + + +N Sbjct: 313 VPDAAN 318 >gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1] gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori HPAG1] Length = 391 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L +++L + +K I +AK LL N GD A L L + IT + Sbjct: 150 NKSDLDKLCDKALALLKKQIEPDAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKT 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 ++ + D + + +++G +I +A + Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265 >gi|74185604|dbj|BAE32694.1| unnamed protein product [Mus musculus] Length = 393 Score = 39.6 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 53/175 (30%), Gaps = 15/175 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L++ + E + +++ GG S + L +L + D ++ + + Sbjct: 216 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGVADGHVSYEQAAAL 274 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++EI++A G + D + L++ + L Sbjct: 275 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 326 Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + + +I P + L + + + + + R Sbjct: 327 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMR 378 >gi|254560987|ref|YP_003068082.1| DNA polymerase III, tau and subunit gammas [Methylobacterium extorquens DM4] gi|254268265|emb|CAX24200.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens DM4] Length = 626 Score = 39.6 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +++ EA + G + + L + ++ Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G + A + +L L+ ++ Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ ++ + R ++ R W ++ + L ++ Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376 >gi|222053486|ref|YP_002535848.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32] Length = 576 Score = 39.6 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 ++D + + + SIS +A I+ G S + L ++ ++C E+ + + V Sbjct: 181 QKIVDRLRYIVDQEKVSISSDALAIVARKGDGSMRDSLSTLDQVLAFCGEN--VADDDVA 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ + E A + + + + + F+ L + I Sbjct: 239 SLLGVVDRRLLLEASQAVFSRDNKSVLEIVKQVDSFGYSMRQFCQELIDHFRNLAILRAI 298 Query: 268 KECSNI 273 S+I Sbjct: 299 DNASDI 304 >gi|218530155|ref|YP_002420971.1| DNA polymerase III subunits gamma and tau [Methylobacterium chloromethanicum CM4] gi|218522458|gb|ACK83043.1| DNA polymerase III, subunits gamma and tau [Methylobacterium chloromethanicum CM4] Length = 626 Score = 39.6 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +++ EA + G + + L + ++ Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G + A + +L L+ ++ Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ ++ + R ++ R W ++ + L ++ Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376 >gi|294101690|ref|YP_003553548.1| DNA polymerase III delta [Aminobacterium colombiense DSM 12261] gi|293616670|gb|ADE56824.1| DNA polymerase III delta [Aminobacterium colombiense DSM 12261] Length = 312 Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 68/167 (40%), Gaps = 13/167 (7%) Query: 79 LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK-----SNEIKKNNTLRKIAEK 133 LFS+K+++L+EN + + + + ++++ S I K R K Sbjct: 53 LFSEKQMLLVENAENLGVLPESMITFFNSVEESCLVLLVYDGSPSKYIPKEALQRAEILK 112 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I +P L L+ + ++ KEA +L+ + D R+E++K+++ Sbjct: 113 AEE---IPFWP--SARLRWLLN-FCGDRRINLEKEAAALLIDWIE-DGEELRSEIEKIAA 165 Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + + +T + V+ + D + ++ QG ++L Sbjct: 166 FS-DGQTVTSEMVRALSFDEGRSSMLRFLDGVCQGNRKEILILFPHL 211 >gi|240138441|ref|YP_002962913.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens AM1] gi|240008410|gb|ACS39636.1| DNA polymerase III, tau and gamma subunits [Methylobacterium extorquens AM1] Length = 626 Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +++ EA + G + + L + ++ Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G + A + +L L+ ++ Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ ++ + R ++ R W ++ + L ++ Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376 >gi|290968854|ref|ZP_06560391.1| DNA polymerase III, delta subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781150|gb|EFD93741.1| DNA polymerase III, delta subunit [Megasphaera genomosp. type_1 str. 28L] Length = 337 Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 35/321 (10%), Positives = 93/321 (28%), Gaps = 46/321 (14%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS--TFWNEINSTSLF 80 + I YG++ L E + + + ++ +++IS I T LF Sbjct: 4 IAIIYGTESYL-RER----HRREFLQACRQRAGADMDIQTAERDISLSRLAEMIGETGLF 58 Query: 81 S--------KKKIILIENLSTEKKVLDC-----LEEIIIKNICNHIIIIKSNEI-KKNNT 126 + ++ ++ +K + L+ + N ++ + + +K+ Sbjct: 59 CRAAVTICREDTLLRGKHKGASRKKMTAEEEWFLQRLAHFPEENGLLFYREGMLDEKDPF 118 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 R + C P + +M + +++ + Q L + S Sbjct: 119 FRAL---SALATVWYCPPVSSKEIMRYVNAFFQEQGHTLTAQGTQYLQNLFATWQDISLQ 175 Query: 187 ----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 E+Q++ + ++ ++ + I ++ K + Sbjct: 176 YIYTEIQRICLQAEAEAVLDVADLQGMFSGAVEKNIFSFLDFFFSRKTAEIVSFFPGLF- 234 Query: 243 SKMPSHALLHGFLQKFQLLEKI--HIIKECSNISFEKIIQKTE--------KNIIPMKRN 292 L L + + +S + + + K I+ + Sbjct: 235 ---NPKVFLKSVGAILTQLHILLEYKELTAMGMSERQAVALMQEINKGCNVKGIVWHLKK 291 Query: 293 ILQESLRIWNKNLVRETLHKI 313 + W +RE + I Sbjct: 292 KE----KYWTIKELRELIAAI 308 >gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa] Length = 1188 Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 63/194 (32%), Gaps = 21/194 (10%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ I K+A +++ + G + L++LS L I+ V Sbjct: 624 DADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQK-ISVPLV 680 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++++ + ++++ + N + + + + AL L + Sbjct: 681 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLAL-------MSQLATVIT 733 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325 + F K + + ++ L + +R+ L + R Sbjct: 734 DILAGSYDFTKERPRRK--------FFRRKPLSKEDMEKLRQALKTLSEAEKQLRMSNDK 785 Query: 326 LEKNIIFQTILYIA 339 L + +L +A Sbjct: 786 L--TWLTAALLQLA 797 >gi|163851288|ref|YP_001639331.1| DNA polymerase III, subunits gamma and tau [Methylobacterium extorquens PA1] gi|163662893|gb|ABY30260.1| DNA polymerase III, subunits gamma and tau [Methylobacterium extorquens PA1] Length = 628 Score = 39.6 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +++ EA + G + + L + ++ Sbjct: 213 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 270 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ I ++ A ++G + A + +L L+ ++ Sbjct: 271 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 330 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 ++ ++ + R ++ R W ++ + L ++ Sbjct: 331 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 378 >gi|283780299|ref|YP_003371054.1| DNA polymerase III subunits gamma/tau [Pirellula staleyi DSM 6068] gi|283438752|gb|ADB17194.1| DNA polymerase III, subunits gamma and tau [Pirellula staleyi DSM 6068] Length = 715 Score = 39.6 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 16/195 (8%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++D + EA IL G S++ L++L SY IT V Sbjct: 219 SQAILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSY--GGKQITVDDV 276 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 + I ++ A A+ D + L QLL + Sbjct: 277 HRALGTAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAE------QLLGYLRD 330 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK---- 322 + ++ ++ W + + +D + R+ Sbjct: 331 AM----VLSVGASSDMLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHG 386 Query: 323 KKYLEKNIIFQTILY 337 + +E ++ L Sbjct: 387 RTLVEVAVVRLCSLG 401 >gi|240280967|gb|EER44470.1| ran-binding protein [Ajellomyces capsulatus H143] Length = 670 Score = 39.6 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%) Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138 F + + + + KK + N + + + + L AE + T++ Sbjct: 286 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 342 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + PD + +L+ + L G E + + + A +N + YC Sbjct: 343 NLHSSPDESSFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 397 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 E+ V I ++I A + G I A+ + A+ + + Sbjct: 398 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 447 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283 KF +E + E IS Q Sbjct: 448 KF--IEMMRRCTEPQPISPSTSKQAAR 472 >gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W] Length = 562 Score = 39.6 bits (91), Expect = 0.78, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b] Length = 596 Score = 39.6 bits (91), Expect = 0.78, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ I+ +A ++ G + + L + + Sbjct: 190 EPEVMIALLRRIADAEGAQITDDALALITRAAEGSARDATSLLDQAI--SHGAGETSAAE 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 248 VRSMLGLADRGRVLDLFDLIMKGDAAGALTELGGQYAEGADPMAVLRDL 296 >gi|311742339|ref|ZP_07716148.1| replication-associated recombination protein A [Aeromicrobium marinum DSM 15272] gi|311313967|gb|EFQ83875.1| replication-associated recombination protein A [Aeromicrobium marinum DSM 15272] Length = 455 Score = 39.6 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 13/127 (10%) Query: 144 PDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDIL 200 D + + + + +++ +A+ L+ GGD R + E ++ Sbjct: 187 ADVTTVVDRAVADERGLAGAVTLTDDARDHLVRLAGGDGRRALTYLEAAAGATTSQGRTA 246 Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 IT + D H I + + A+ + + + + Sbjct: 247 ITVDDAALAVDRAAVRYDRQGDQHYDVTSAFIKSIRGSDVDAALHYLARMIEAGEDARFV 306 Query: 251 LHGFLQK 257 + Sbjct: 307 ARRLMIH 313 >gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2] gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185] gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 562 Score = 39.6 bits (91), Expect = 0.80, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876] Length = 562 Score = 39.6 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|225562608|gb|EEH10887.1| ran-binding protein [Ajellomyces capsulatus G186AR] Length = 556 Score = 39.6 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%) Query: 80 FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138 F + + + + KK + N + + + + L AE + T++ Sbjct: 172 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 228 Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 + PD + +L+ + L G E + + + A +N + YC Sbjct: 229 NLHSSPDESTFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 283 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256 E+ V I ++I A + G I A+ + A+ + + Sbjct: 284 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 333 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283 KF +E + E IS Q Sbjct: 334 KF--IEMMRRCTEPQPISPSTSKQAAR 358 >gi|331222505|ref|XP_003323926.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309302916|gb|EFP79507.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 310 Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 129 KIAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 KI E S AI Y ++ L L+ E +++ L+ GD R Sbjct: 156 KIIEPIQSRCAILRYGKLKDQEVLKRLV-EIATAENVKYAEDGLAALIFTSEGDM---RQ 211 Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + L S ++ + V + H + I+++++A +G + +A+ + Sbjct: 212 AINNLQSTVSGFGFVSAESVFKVCDQPHPVVIQKLLSACEKGDLSDALDQLEHLWEQGYS 271 Query: 247 SHALLHGFLQKFQLLEKI 264 + ++ L+ + ++++ Sbjct: 272 ALDIVGTLLKVVKSMDRM 289 >gi|126178781|ref|YP_001046746.1| replication factor C large subunit [Methanoculleus marisnigri JR1] gi|150415664|sp|A3CTR4|RFCL_METMJ RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|125861575|gb|ABN56764.1| replication factor C large subunit [Methanoculleus marisnigri JR1] Length = 454 Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 30/193 (15%) Query: 54 SLVVLNALE--IQKNISTFWNEINSTSLFSK--KKIILIENLST-----EKKVLDCLEEI 104 +V LNA + + + ++T+ S +K+IL++ ++ + EI Sbjct: 63 EVVELNASDQRTKAALERVAGAGSTTASLSGASRKLILLDEADNLHGQADRGGAKAIVEI 122 Query: 105 IIKNICNHIIIIKSNE---IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161 I II+ +N+ + + L+ + E ++ + + Sbjct: 123 IAAAQQ--PIILIANDYYSLTRE--LKAVTEPVQFRAL------QARSIVPRLRQICAAE 172 Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDIICDTHVLYIE 219 + A + GGD A+ N Y + V D I Sbjct: 173 GVACDPAALDDIANRAGGDMRAAVN-----MLYAAAIGKEHLAAGDVHTSAKDERS-TIF 226 Query: 220 EIINATIQGKIYN 232 E++ AT +GK Sbjct: 227 ELVGATFKGKRDA 239 >gi|71894098|ref|YP_278206.1| hypothetical protein MS53_0074 [Mycoplasma synoviae 53] gi|71850886|gb|AAZ43495.1| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 310 Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 103/298 (34%), Gaps = 20/298 (6%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + YGS+ LI F+ + + +K+ + F+ + LF +K Sbjct: 4 ILIYGSENYLIN--------KKIEEIKKKFANYKVTNIYYKKDFAFFYEVYSQNDLFQEK 55 Query: 84 KIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTSVLAIS 141 ++I + + +KK ++ L + + ++ + + I KNN L K+ K Sbjct: 56 ELIFVNDFDFKDKKQVEKLINTLSDDNEKIVLFVNYQDFIPKNNLLEKLQSKNK---VFE 112 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 K +D I + L + L+ + EL K+ ++ I Sbjct: 113 FKKLTKKEKVDYIVDYLKSKNAQVKSLDIYYLIEKSTENLEILIKELDKVLI---KENKI 169 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T++ + + I + +NA YN +A +L L Sbjct: 170 TKEVIDENIFNYSESVEFAFVNALTVRNFYNLYSKYLKEVAQNKSVITILAQIANFLHLS 229 Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 ++ + + + +I + + I + + E L I+N + + L I + Sbjct: 230 CSVYYLFQ-QGKNNFEIAKDLK--IHEFRVQKIIEFLNIYNLYNINK-LKDIVSELLE 283 >gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180] gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180] Length = 391 Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L ++L + +K I +AK LL N GD A L L + IT + Sbjct: 150 NKSDLDKLCTKALALLKKQIEPDAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLKT 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 ++ + D + + +++G +I +A + Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265 >gi|257461422|ref|ZP_05626518.1| DNA polymerase III, delta subunit family [Campylobacter gracilis RM3268] gi|257441145|gb|EEV16292.1| DNA polymerase III, delta subunit family [Campylobacter gracilis RM3268] Length = 334 Score = 39.6 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 21/266 (7%) Query: 78 SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAEKFT 135 SLF + I+ S KK + K+ N+ +I + N+ I + K E+ Sbjct: 65 SLFGGSNTLHIKTASLIKKEELRRLIALCKSDANNHLIYELNDSEISVSADFVKEFERNE 124 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + L+ + + + A + A S +E++K + Sbjct: 125 VRFFKPSGVNEA---IALLAQKCEMCGLFANTAALSRIYAIHNESLSLSASEIEK---FA 178 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 + + Q+V ++ + +E+ + + L L++ F Sbjct: 179 SLGLELNLQNVNLMVYGLSEVSYDELFDKIFSLCDFRVD-FYKMALGGGYNEMELINYFY 237 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI-- 313 + + ++H + + K + + + ++ + + T +KI Sbjct: 238 RLIYRIFRLHAYVKINGRFDFKAVLGYQPP------PSVAAQMQRYATSFSTRTFYKIFA 291 Query: 314 ----DHRIHLARKKKYLEKNIIFQTI 335 + K ++ ++ + Sbjct: 292 HLNDLEFELKSEKNAAKDELLLASFL 317 >gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134] Length = 562 Score = 39.6 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|313674179|ref|YP_004052175.1| two component, sigma54 specific, transcriptional regulator, fis family [Marivirga tractuosa DSM 4126] gi|312940877|gb|ADR20067.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Marivirga tractuosa DSM 4126] Length = 384 Score = 39.2 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 27/158 (17%) Query: 70 FWNEINSTSLFSKKKIIL------IENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEI 121 F +EI L ++ K++ I + +K + + I KN+ + I++ E Sbjct: 236 FLDEIGDMPLSAQAKVLRALQENKINRVGGDKDIKVDVRIIAATNKNLKDA---IENGEF 292 Query: 122 KKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESL-------LIGQKSISKEAKQIL 173 +++ + + + + + D K + +L+E+ L +KSI K+A L Sbjct: 293 RED-----LFHRLSVIRINVPPLKDRKDDIPELVEKFLSDIAEEHGSKKKSIDKDALTQL 347 Query: 174 LA-NLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 N G+ RN +++L L IT Q VK I Sbjct: 348 KEYNWSGNIRELRNVVERLI--ILGADTITAQDVKKYI 383 >gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA] gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA] gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens KN400] Length = 440 Score = 39.2 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 22/191 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 E L + +A + GGD + N L+ ++ +++ I + V++ I Sbjct: 185 ERGLGASGLAADDDALAFMAEQSGGDGRVALNTLET-AARLVKNGRIDLESVREAIQKKP 243 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 + H I I + A+ + + +L +++ Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILR------RMVILA 297 Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319 ++ ++ + +P R I+ ++ + ID + Sbjct: 298 SEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAE 357 Query: 320 ARKKKYLEKNI 330 RK L + Sbjct: 358 VRKSGALPVPL 368 >gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis SKA53] gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis SKA53] Length = 572 Score = 39.2 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 36/104 (34%), Gaps = 2/104 (1%) Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 + L+ + IS +A ++ G +++ L + + V+ ++ Sbjct: 193 IALLRKIATAEGAQISDDALALITRAAEGSARDAQSLLDQAI--SHGAGETSAAQVRAML 250 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + ++ + ++G+ +A+ A A+L Sbjct: 251 GLADRGRVLDLFDMILRGRAADALTELSGQYADGADPMAVLRDL 294 >gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter bethesdensis CGDNIH1] gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis CGDNIH1] Length = 686 Score = 39.2 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 31/187 (16%) Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNEIKK----------NNTLRKIAEKFTSVLAISCY 143 + + L + + + + I + E++K LR+I Sbjct: 182 SRNAFNALLKTLEEPPPHVTFIFATTELRKVPVTVLSRCQRFDLRRI------------- 228 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI---L 200 + L L S S +A ++ G + R+ L L ++ Sbjct: 229 --DAEVLSAHFSRILEQEGVSASPQALALIARAADG---SVRDGLSLLDQAIAQNDPGIP 283 Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 I+E V D++ + +++ A + G +A+ + D A +L L+ Sbjct: 284 ISEAQVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHT 343 Query: 261 LEKIHII 267 L ++ I Sbjct: 344 LTRLKTI 350 >gi|56476074|ref|YP_157663.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] gi|56312117|emb|CAI06762.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum EbN1] Length = 659 Score = 39.2 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 2/83 (2%) Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L A + L G + + L + + E+ V ++ Sbjct: 190 ILEAEGVPFEAPALRHLAKAANGSMRDALSLLDQAI--AHGSGRVEEEQVSHMLGTVGDD 247 Query: 217 YIEEIINATIQGKIYNAIMLADF 239 ++ +++A G + + +AD Sbjct: 248 HLYAVLDALAAGDVAGMLAVADR 270 >gi|328906727|gb|EGG26499.1| DNA polymerase III, subunit gamma and tau [Propionibacterium sp. P08] Length = 968 Score = 39.2 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 I + + ++ +++ +L LGG D ++ + Sbjct: 310 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 353 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 ++ T ++EI++A G + + D + L++ + L + Sbjct: 354 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 413 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + P + L + + + + + R Sbjct: 414 AVPDACRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 465 Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 466 PRLHLELMCSRILLPGADTDGRGIHAR 492 >gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705] gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705] Length = 431 Score = 39.2 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%) Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199 + I+ +L + ++ EA+ L GD A+ N EL LS+ D Sbjct: 154 DISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 213 Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244 IT I DT+ +II+A + A+ +A Sbjct: 214 TITIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 270 >gi|282856537|ref|ZP_06265812.1| DNA polymerase III, delta subunit superfamily [Pyramidobacter piscolens W5455] gi|282585658|gb|EFB90951.1| DNA polymerase III, delta subunit superfamily [Pyramidobacter piscolens W5455] Length = 304 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 14/151 (9%) Query: 70 FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129 + E + SLF+ ++I +++ + + D ++ + + + I +I S + LRK Sbjct: 44 LFEEALTPSLFAPRRIFEVDDGRSLGVLPDTYKKYVERGDADVIFLIHS-----DKPLRK 98 Query: 130 -IAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184 + + F + ++ Y N+ + ++ ++ A +L + D Sbjct: 99 ELGDVFETAFSVPYEAAPYWPNQR--VGWLQRLARASGCTLDAAAAALLAEWIE-DEEEL 155 Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHV 215 R+E+ KL+ + IT Q V + D Sbjct: 156 RSEVDKLAK-AAPNKRITVQQVNSLSMDEGG 185 >gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 444 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 79/259 (30%), Gaps = 43/259 (16%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINS-TSL 79 IFYG L N S LNA+ +I NE S+ Sbjct: 53 RSLIFYGPPGTGKTTLANIIANTTKS------SFEKLNAVTSGVTDIKKIVNESKDRLSM 106 Query: 80 FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKF 134 + K+ I+ I+ + K D L + II+I + N +R + + Sbjct: 107 YGKRTILFIDEIHRFNKSQQDALLPYVE---DGTIILIGA---TTENPYFEVIRPLVSRS 160 Query: 135 TSVLAISCYPDNKIHLMDLI-------EESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 + YP + + +++ + L + I+ +A ++ GD A+ N Sbjct: 161 ---MIFELYPLSNEDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAALNA 217 Query: 188 LQKLSSYCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233 ++ D I + ++ I D H I I + A Sbjct: 218 IELAFLTTERDENGVINIDIEIAQECIQKKVLKYDKDGDNHYDSISAFIKSMRGSDPDAA 277 Query: 234 IMLADFFLASKMPSHALLH 252 + + + + Sbjct: 278 LYWLAKMIYAGEDPLFIAR 296 >gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272] gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273] Length = 562 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D ++ + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 269 ECSNISFEKIIQKT 282 + ++ I+ Sbjct: 300 QLEHMLERVIVDDQ 313 >gi|195052859|ref|XP_001993384.1| GH13779 [Drosophila grimshawi] gi|193900443|gb|EDV99309.1| GH13779 [Drosophila grimshawi] Length = 1964 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 30/230 (13%) Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS---KEAKQILLANLGG- 179 + L+ E S+ A ++ I E+ + IS E+ L LG Sbjct: 1238 SAPLQAENEGADSLQA---------SVISRISEAKALQNNRISEMSAESLVWLSHRLGPV 1288 Query: 180 --DRIASRNELQKLSS-YCLEDILI-TEQHV--KDIICDTHVLYIEEIINATIQGKIYNA 233 R +RN L+ LS Y ++ L+ + V D+ D L I NA + G +A Sbjct: 1289 LTARHITRNLLKLLSLCYVGQENLLPEMEAVCCSDLSQDASNLNYFSIANARVVGD-RSA 1347 Query: 234 IMLADFFLASKM--PSHALLHGFLQKFQLL-----EKIHIIKECSNISFEKIIQKTEKNI 286 + + ++ + LL +L L +++ E + IS ++I+ + Sbjct: 1348 ARVLECLMSIAALYGENFLLVQYLPHISELILLCSKRMTGSLEGAIISSLQLIKYMLPCL 1407 Query: 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + + E L+ + + + ++ +L YL ++++ + L Sbjct: 1408 M---DATIMEHLQHILLDAILLPILRLLSSTNLLMPSGYLGRSLLTRKFL 1454 >gi|253581399|ref|ZP_04858625.1| ATPase and helicase [Fusobacterium varium ATCC 27725] gi|251836763|gb|EES65297.1| ATPase and helicase [Fusobacterium varium ATCC 27725] Length = 303 Score = 39.2 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 34/183 (18%) Query: 4 IESHKFIQKSTKNLFLSHF---VFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLV--- 56 I S++ I+ +N + ++FYGSD + E F K + T D F Sbjct: 5 IVSNEEIKTFFRNELKAAKKSGTYLFYGSDTDQLMEFALYFAKGLCCETMEDDFCDTCSV 64 Query: 57 -------VLNALEIQKNISTFWNEI--------NSTSLFSKKKIILIENLSTEKK-VLDC 100 + + LE+ + + + +S+S K+I +++++ KK + Sbjct: 65 CKKIDKLIYSDLEVLDDPNGIKVDAVRELAYKSSSSSYEGGKRIFILKDIHKMKKEAGNS 124 Query: 101 LEEIIIKNICNHIIIIKSNEI------KKNNTL-----RKIAEKFTSVLAISCYPDNKIH 149 L ++I + I+ S+ + K + L R E + Y N Sbjct: 125 LLKLIEEPNEGSFFILLSSSLNILPTIKSRSILVKIKKRNAEELDVDDFTYTFYMGNSED 184 Query: 150 LMD 152 + Sbjct: 185 ING 187 >gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12] gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12] Length = 391 Score = 39.2 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L +++L + +K I AK LL N GD A L L + IT + Sbjct: 150 NKSDLDRLCDKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLELSAKIEDPITLKT 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 +K + D + + +++G +I +A + Sbjct: 207 LKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLTRLIAGGENPEFIARRL 265 >gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] Length = 462 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%) Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199 + I+ +L + ++ EA+ L GD A+ N EL LS+ D Sbjct: 185 DISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 244 Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244 IT I DT+ +II+A + A+ +A Sbjct: 245 TITIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 301 >gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM 18205] Length = 638 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 71/227 (31%), Gaps = 32/227 (14%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151 + + + + + I I+ EK + I Y ++ + Sbjct: 136 AAFNAFLKTLEEPPQHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVA 183 Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + I ++A ++ G + + + +S+C+ + IT Q V + Sbjct: 184 NTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGN--ITYQKVIE 241 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + +++ ++ K+ ++ D L ++ G Q + + Sbjct: 242 DLNVLDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQH------VRNVM 295 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 + +++ ++ ++ Q + + + L ++ Sbjct: 296 MAKDPQTLPLLETSD-----DQKAKFQAQAQKAPTPFLYKALELMNQ 337 >gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1] gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1] Length = 504 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 13/143 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 260 LLEKI--HIIKECSNISFEKIIQ 280 LE + ++ + + +Q Sbjct: 300 QLEHMLERVMVDEQFRMLSEEMQ 322 >gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917] Length = 597 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 5/156 (3%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L + I EA ++ G + + L +LS I + V Sbjct: 185 EALEAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLL---PAPIKAEAVW 241 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +++ + + A G+ + + L A+L G + L + Sbjct: 242 ELLGAVPEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDLVLMAAA 301 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 E + + + P+ + I ++ L W Sbjct: 302 PE--RPELTSVSPQLRDQLPPLAQRIGRQRLLQWQA 335 >gi|311897064|dbj|BAJ29472.1| putative DNA polymerase III subunit gamma/tau [Kitasatospora setae KM-6054] Length = 738 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 11/143 (7%), Positives = 41/143 (28%), Gaps = 11/143 (7%) Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 + +T ++ T ++E+++A + D + + L+ Sbjct: 230 GEAGVTYPMATALLGYTDATLLDEVVDAFAAQDGATVFQVVDRVVEGGHDPRRFVTDLLE 289 Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + L + + + S + +++ + + ++ Sbjct: 290 RLRDLVILATVPDAGEKSLIDAPAD--------RIAVMRAQADRFGPAELSRAADLVNTG 341 Query: 317 IHLARKKKYLE---KNIIFQTIL 336 + R + I + +L Sbjct: 342 LTEMRGNAAPRLQLELICARVML 364 >gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1] gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1] Length = 753 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 50/143 (34%), Gaps = 5/143 (3%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + L+E+ ++ +++ GG S + L +L + ++ +T Sbjct: 180 ATMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYPRAL 238 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ T V I++ ++A G D + + L++ + L + + Sbjct: 239 ALLGVTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAV 298 Query: 268 KECSNI----SFEKIIQKTEKNI 286 + + + +++ + Sbjct: 299 PDAAERGLVDAPGDVLEHMRAQV 321 >gi|307208004|gb|EFN85563.1| ATPase WRNIP1 [Harpegnathos saltator] Length = 505 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 19/115 (16%) Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQ---------KLSSYCLEDILITEQHVKD--- 208 + I KE Q L GD + N L+ KL + C D IT + V+ Sbjct: 275 SKFHIDKETLQWLSEACDGDAHVALNTLELAVLAKEPDKLRTSCNNDFKITVKDVRKYLI 334 Query: 209 ---IICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 ++ D I +A GK+ ++ +A+K + ++ Sbjct: 335 QTHLLSDEESSQSHHIYSALHKSIRAGKVNASLYWMARIMAAKEDPVNIARRLVR 389 >gi|330879803|gb|EGH13952.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. race 4] Length = 360 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 151 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 208 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 209 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 268 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 269 GHGDRDRVLALAQALP 284 >gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719] gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719] Length = 424 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 21/196 (10%) Query: 144 PDNKIHLMDLIE---ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199 D + L IE L Q I ++A GD + N L+ D Sbjct: 154 EDVRQALTRAIEYDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213 Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 +T Q KD + D H + + + A+ + + Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273 Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305 + + + E I + + I+ E+ +P R L ++ + + Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330 Query: 306 VRETLHKIDHRIHLAR 321 + ID + R Sbjct: 331 SNSAMSAIDSALSDIR 346 >gi|313835781|gb|EFS73495.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA2] gi|314970150|gb|EFT14248.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL037PA3] Length = 773 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 I + + ++ +++ +L LGG D ++ + Sbjct: 115 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 158 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 ++ T ++EI++A G + + D + L++ + L + Sbjct: 159 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 218 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + P + L + + + + + R Sbjct: 219 AVPDACRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 270 Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 271 PRLHLELMCSRILLPGADTDGRGIHAR 297 >gi|4539401|emb|CAB37467.1| putative protein [Arabidopsis thaliana] gi|7268676|emb|CAB78884.1| putative protein [Arabidopsis thaliana] Length = 1057 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 67/207 (32%), Gaps = 33/207 (15%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ 200 ++ ++ + I K+A +++ + G + L++LS L + Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQRISVPLVQ 664 Query: 201 ------ITEQHVKDI-ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 ++ H+K + + + ++++ + N + + + + AL Sbjct: 665 ELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL--- 721 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L + + F K K + ++ + +E + +R+ L + Sbjct: 722 ----MSQLATVITDILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTL 769 Query: 314 DHRIHLAR-KKKYLEKNIIFQTILYIA 339 R L + +L +A Sbjct: 770 SEAEKQLRVSNDKL--TWLTAALLQLA 794 >gi|307822531|ref|ZP_07652762.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] gi|307736135|gb|EFO06981.1| DNA polymerase III, subunits gamma and tau [Methylobacter tundripaludum SV96] Length = 540 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 2/111 (1%) Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L A ++L G + L + Y + + + V ++ Sbjct: 190 ILQQEHIEAESGALKLLSRAADGSMRDGLSLLDQAIVY--GNGKVGTEDVNAMLGTVAQQ 247 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 +E I+ A +G + + +L LQ + + I Sbjct: 248 PVEAILTALAEGDAAAILDKINEIANLTPDFSDVLQQILQVLHRIALLQQI 298 >gi|149179070|ref|ZP_01857643.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797] gi|148842110|gb|EDL56500.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797] Length = 445 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 26/191 (13%) Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII------- 210 L ++ ++A L+ GD S N L+ + + V Sbjct: 188 LARYNVTVEQDALDFLIEVCDGDARRSLNALEIGVLSLHGSERVFDLDVAQESIQKKAIQ 247 Query: 211 ----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 D H +I + A+ + + L + I Sbjct: 248 YDQDGDAHYDSASALIKSMRGSDPDAALYWLARMIEAGEDPRFLARRIV--------IAA 299 Query: 267 IKECSNISFEK------IIQKTEKNIIPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319 ++ N + EK +P R +L +++ + ID +H Sbjct: 300 SEDVGNADPTALTLAMSVFNAVEKIGMPEGRILLSQAVTYIATAPKSNASYVAIDEALHD 359 Query: 320 ARKKKYLEKNI 330 R K L I Sbjct: 360 VRNKSLLPVPI 370 >gi|331701253|ref|YP_004398212.1| AAA ATPase central domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128596|gb|AEB73149.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL B-30929] Length = 425 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 103/332 (31%), Gaps = 46/332 (13%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG + + + F ++ A + +K++ E S Sbjct: 43 ILYGPPGTGKTSIASAIAGSTKYA----FRVLNA-ATDTKKDLQVVAEEAK----MSGTV 93 Query: 85 IILIENLST-EKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLR---KIAEKFTS 136 ++L++ + +K D L ++ II+I ++ I N +R +I E Sbjct: 94 VLLLDEIHRLDKTKQDFLLPLLES---GSIILIGATTENPYININPAIRSRTQIFEVHPL 150 Query: 137 VLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 D + L + + L SI+KEA L GD +S N L+ L+ Sbjct: 151 TAT-----DIQKALNRALNDKEKGLGNYPVSITKEALNFLATATNGDLRSSLNALE-LAV 204 Query: 194 YC-----LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLAD 238 I +T+ V++ + D H I + A+ A Sbjct: 205 KSTPKNDQGKIAVTQAIVEECLQRKALNSDKNGDAHYDVISAFQKSIRGSDTDAALHYAG 264 Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + S + + ++ + + ++ ++ + + + Sbjct: 265 RLIESGDLVSIMRRLLVIAYEDVGLANPGACQRTVAAVDAARQLGLP--EARIPLANAII 322 Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330 + + ID + R Y + + Sbjct: 323 ELCLSPKSNSAMAAIDGAVSDIRSGNYGDVPL 354 >gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 562 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D + + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299 Query: 269 ECSNI 273 + ++ Sbjct: 300 QLEHM 304 >gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis CI] gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar anthracis str. CI] Length = 562 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D + + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299 Query: 269 ECSNI 273 + ++ Sbjct: 300 QLEHM 304 >gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201] gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 562 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D + + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299 Query: 269 ECSNI 273 + ++ Sbjct: 300 QLEHM 304 >gi|218901224|ref|YP_002449058.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820] Length = 562 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y+ ++ + + A+ + D + + F+ ++ + Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299 Query: 269 ECSNI 273 + ++ Sbjct: 300 QLEHM 304 >gi|330963243|gb|EGH63503.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. actinidiae str. M302091] Length = 741 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|330879129|gb|EGH13278.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 739 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|71734194|ref|YP_274019.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554747|gb|AAZ33958.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. phaseolicola 1448A] Length = 737 Score = 38.8 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|320323485|gb|EFW79570.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. B076] gi|320329472|gb|EFW85464.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. glycinea str. race 4] Length = 737 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|330889897|gb|EGH22558.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. mori str. 301020] Length = 711 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 161 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 218 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 219 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 278 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 279 GHGDRDRVLALAQALP 294 >gi|257484501|ref|ZP_05638542.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013236|gb|EGH93292.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 737 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|330986180|gb|EGH84283.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M301315] Length = 733 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|237736153|ref|ZP_04566634.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817] gi|229421706|gb|EEO36753.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817] Length = 303 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 29/156 (18%) Query: 4 IESHKFIQKSTKN---LFLSHFVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLV--- 56 I S++ +++ +N L ++FYGSD L+ E F K + T F Sbjct: 5 IISNEEVKEFFRNELKLKKDSGTYLFYGSDMSLLMEFALHFAKGLCCETLEGDFCGECNI 64 Query: 57 -------VLNALEIQKNISTF-WNEIN-------STSLFSKKKIILIENLSTEKK-VLDC 100 + + LEI N +EI S+S +KI +I+++S KK + Sbjct: 65 CKRIDKMLYSDLEILDNPDGLKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKEASNA 124 Query: 101 LEEIIIKNICNHIIIIKSNEI------KKNNTLRKI 130 L ++I + I+ + + K + L K+ Sbjct: 125 LLKLIEEPNKGSFFILLNTNLNILPTIKSRSILVKV 160 >gi|326442330|ref|ZP_08217064.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 719 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%) Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T ++ T ++ +++A G A + D + + L++ Sbjct: 232 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 291 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314 + L + + EK +I ++++ + + ++ Sbjct: 292 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 340 Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349 + R L+ + I + +L A ++ Sbjct: 341 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 378 >gi|297460413|ref|XP_001249612.2| PREDICTED: UPF2 regulator of nonsense transcripts homolog isoform 2 [Bos taurus] gi|297481422|ref|XP_002692096.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog [Bos taurus] gi|296481536|gb|DAA23651.1| UPF2 regulator of nonsense transcripts homolog [Bos taurus] Length = 1280 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 639 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 690 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 691 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 742 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 743 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 802 Query: 310 LHKI 313 + K+ Sbjct: 803 MRKL 806 >gi|301779565|ref|XP_002925196.1| PREDICTED: regulator of nonsense transcripts 2-like [Ailuropoda melanoleuca] gi|281345763|gb|EFB21347.1| hypothetical protein PANDA_014646 [Ailuropoda melanoleuca] Length = 1269 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 630 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 793 Query: 310 LHKI 313 + K+ Sbjct: 794 MRKL 797 >gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum NCIB 8327] gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum NCIB 8327] Length = 390 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 18/178 (10%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLI 154 + + + + + I I + E+ K + +A C N + + I Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTEL----------HKIPATIASRCQRFNFKRIPISEI 191 Query: 155 EESLL----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVK 207 + L S +A Q++ G +++ L ++ ++ + I V Sbjct: 192 QRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSILDQVIAFAIDSEGERAIRYDKVS 251 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 D++ + + +A + G + +A + L ++ F+ IH Sbjct: 252 DLLSYIDDEHFFMVTDAIVSGDAAAMLDVAGMVNRNGYDEQDFLEKLIEHFRNFLVIH 309 >gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis str. Al Hakam] gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al Hakam] gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB108] gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus NVH0597-99] gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus 03BB102] gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1] gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42] Length = 562 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|298486349|ref|ZP_07004411.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159077|gb|EFI00136.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 737 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB 1003] gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB 1003] Length = 589 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 17/169 (10%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + + I+++A ++ G + + L + T V+ ++ Sbjct: 203 LSKVATKENAQIAEDALALITRAAEGSVRDAMSLLDQAI--SHGAGETTADQVRAMLGLA 260 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + ++ + ++G A+ + A+L L +I I Sbjct: 261 DRARVLDLFDMILKGDAAAALTELGAQYSDGADPMAVLRD-------LAEITHWVSVIKI 313 Query: 274 SFEKIIQKTEKNIIPMKRNILQESL------RIWNKNLVRETLHKIDHR 316 + E T + + +++ R+W ++ + + ++ Sbjct: 314 TPEAAEDPTVPPEERTRGQAMAQAIPMRVLSRLW--QMLLKAIEEVSSA 360 >gi|291401994|ref|XP_002717550.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog [Oryctolagus cuniculus] Length = 1262 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 623 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 674 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 675 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 726 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 727 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 786 Query: 310 LHKI 313 + K+ Sbjct: 787 MRKL 790 >gi|237799328|ref|ZP_04587789.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022184|gb|EGI02241.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. oryzae str. 1_6] Length = 384 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 170 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 227 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 228 DHGQVFDVLTALLEGDARGVLEAVRYLAEQGPDWSGVLSEILNVLHRVAIAQALPEGVDN 287 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 288 GHGDRDRVLALAQALP 303 >gi|157823467|ref|NP_001101891.1| regulator of nonsense transcripts 2 [Rattus norvegicus] gi|149021045|gb|EDL78652.1| UPF2 regulator of nonsense transcripts homolog (yeast) (predicted) [Rattus norvegicus] Length = 1268 Score = 38.8 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK +++ + R +L + L V Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRRKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792 Query: 310 LHKI 313 + K+ Sbjct: 793 MRKL 796 >gi|302063638|ref|ZP_07255179.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato K40] gi|302133891|ref|ZP_07259881.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 740 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|213968912|ref|ZP_03397052.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] gi|213926211|gb|EEB59766.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato T1] Length = 744 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|301385366|ref|ZP_07233784.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato Max13] Length = 740 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|289626398|ref|ZP_06459352.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866322|gb|EGH01031.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 741 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4] gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4] Length = 747 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 49/139 (35%), Gaps = 5/139 (3%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 L+E+ ++ +++ GG S + L +L + ++ +T ++ Sbjct: 184 GLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYPRALALLG 242 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T V I++ ++A G D + + L++ + L + + + + Sbjct: 243 VTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAVPDAA 302 Query: 272 NI----SFEKIIQKTEKNI 286 + +++ + Sbjct: 303 ERGLVDAPGDVLEHMRAQV 321 >gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Ames] gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. 'Ames Ancestor'] gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Sterne] gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis str. A2012] gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227812696|ref|YP_002812705.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229604772|ref|YP_002864674.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. CNEVA-9066] gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Western North America USA6153] gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Kruger B] gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Vollum] gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. Australia 94] gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str. Ames] gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. 'Ames Ancestor'] gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. Sterne] gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0488] gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0193] gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0442] gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0389] gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0465] gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0174] gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis Tsiankovskii-I] gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. CDC 684] gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. A0248] Length = 562 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|317126764|ref|YP_004093046.1| DNA polymerase III subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] gi|315471712|gb|ADU28315.1| DNA polymerase III, subunits gamma and tau [Bacillus cellulosilyticus DSM 2522] Length = 574 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++D + E + + + A ++ G + + L + SY D +TE V Sbjct: 180 AQAMIDRMREIIEASHVHVEEAALSLIARASEGGMRDALSLLDQAISYA--DESVTEDDV 237 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 II + ++ A +G + + D + + L + Sbjct: 238 LSIIGAVSQQLLYDVALALNEGHVAGGLEAVDLIIKEGKDPNRFLEDLI 286 >gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor] gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor] Length = 1026 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 19/191 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ ++ + K+A +++ + G + L +LS I+ V++ Sbjct: 523 DIVNTLQWICTSESLDVDKDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 579 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + N + + + AL L I Sbjct: 580 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDI 632 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 + +F + KR L + + +R+ L + R Sbjct: 633 LAGSYAFTRE----RPRRKFFKRPTLSKE----DMEKLRQALKTLSEAEKQLRVSSDKAT 684 Query: 329 NIIFQTILYIA 339 + +L +A Sbjct: 685 WLTA-ALLQLA 694 >gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str. A1055] gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W] gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 562 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|56460949|ref|YP_156230.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] gi|56179959|gb|AAV82681.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR] Length = 681 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 57/179 (31%), Gaps = 20/179 (11%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + + L Q EA +L + G + + + ++ V Sbjct: 180 NDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAI--AQGGGSVSIDSV 237 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 + ++ + V I ++ + ++G + D ++ ++L L + Sbjct: 238 RRMLGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVELQSLLHQLALVQQ 297 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + +N+ ++L+ LR L+ + ++ + R+++ Sbjct: 298 VPSAANV--------------FENSDVLKPLLRRMPAELI-QVFYR---TVLEGRREQA 338 >gi|328794225|ref|XP_001122490.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like, partial [Apis mellifera] Length = 318 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVKDII- 210 E+ L IS + K L + GD + N L+ + +IT + +++ I Sbjct: 167 EQGLREYNVEISDDDKMWLSGSTDGDLRSVLNALELAVLSTPKENDKTVITREILEECIQ 226 Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 D+H I + A+ L + + A+ + F+ + Sbjct: 227 KKSMSGDKNGDSHYDTISAFQKSIRGSDADAALHYLARILEAGDLNIAMRRLLVIAFEDI 286 Query: 262 EKIHIIKECSNISFEKIIQKTEKN 285 + +S + + T Sbjct: 287 GLANPQAGQYTVSAVQAAKLTGLP 310 >gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L] gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L] Length = 562 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] Length = 660 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 3/113 (2%) Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 IS++A ++ G + + L +L+ ++ + V D++ + Sbjct: 196 ENIPISQDAITLVAQISQGGLRDAESLLDQLALL---PGEVSPEQVWDLVGSVSEKDLFA 252 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 ++ A Q + L +L ++ L ++ Sbjct: 253 LLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305 >gi|120602907|ref|YP_967307.1| DNA polymerase III subunit delta [Desulfovibrio vulgaris DP4] gi|120563136|gb|ABM28880.1| DNA polymerase III, delta [Desulfovibrio vulgaris DP4] Length = 329 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120 + FW + LF + +++ N V L + + ++ Sbjct: 44 EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 102 Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162 E+ + + C + + ++ + +++ Sbjct: 103 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 152 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + A + A + D A+ EL KL D + + + ++ L I I Sbjct: 153 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGPDATLGPE-LAKLVSHEPDLDIFAFI 211 Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264 A G + L++ + L ++ Sbjct: 212 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 254 >gi|28870802|ref|NP_793421.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] gi|28854051|gb|AAO57116.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000] Length = 743 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|239618271|ref|YP_002941593.1| DNA polymerase III delta [Kosmotoga olearia TBF 19.5.1] gi|239507102|gb|ACR80589.1| DNA polymerase III delta [Kosmotoga olearia TBF 19.5.1] Length = 311 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 14/200 (7%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122 + +S SLF + + I + K + + +++ + + +++N Sbjct: 32 DDKLEKLKRLFSSNSLFGGIEAVRIIDFDKWRKPEKEMVIDLLKRIQIKSEVFLETN--- 88 Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 K + L S P I++ I K A L N G D Sbjct: 89 ------KTYDLECKTLNFSRPQPWKPKDWHTHIDKIARKLGVMIEKRAISTLFQNSGPDE 142 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + +EL+KL S IT + + ++ + +E + TI G+ Sbjct: 143 MLIYSELKKLKSL---GKTITHEDILKYSFVSNRINLELLAIKTITGQHNGLFEKLQDLA 199 Query: 242 ASKMPSHALLHGFLQKFQLL 261 + +++ G L L Sbjct: 200 VNFSIFLSVVTGILIDIGRL 219 >gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex HEL-45] Length = 583 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + + Sbjct: 188 EPEVMIALLRKIATAETAEITDDALALITRAAEGSARDATSLLDQAI--SHGAGETGAEQ 245 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ A A+L Sbjct: 246 VRAMLGLADRGRVLDLFDMVLRGDAAAALTELSGQYADGADPMAVLRDL 294 >gi|121607506|ref|YP_995313.1| DNA polymerase III subunits gamma and tau [Verminephrobacter eiseniae EF01-2] gi|121552146|gb|ABM56295.1| DNA polymerase III, subunits gamma and tau [Verminephrobacter eiseniae EF01-2] Length = 614 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 2/130 (1%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + + + L Q + +A Q+L G + + + + E V+ Sbjct: 186 QTVHAHLVQVLAAEQVAAEPQALQLLARAARGSMRDALSLTDQAI--AFGSGQLQEAAVR 243 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ Y+ +I+A QG + A + + + + L Q + + + Sbjct: 244 QMLGAVDRSYVFRLIDALAQGDGRAVVETAQELRLNGLSAASTLEEMAAVLQRMAVLQAV 303 Query: 268 KECSNISFEK 277 + ++ + Sbjct: 304 PQQADAVDAQ 313 >gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aceris str. M302273PT] Length = 461 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum KIST612] Length = 477 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 27/217 (12%) Query: 58 LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 ++ +EI + +EI K K+ +I+ + K+ + L + + + Sbjct: 88 MDIIEIDGASNRGVDEIREIREKVKYPPTMGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 147 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCY-----PDNKIHLMDLIEESLLIGQ 162 + + I+ E + I C P ++ + I L Sbjct: 148 EHIVFIL------------ATTEPNKLPMTILSRCQRFDIKPISQERIAGQIAHILEDIG 195 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 S+ +EA + + + L ++ D IT + V + I ++ Sbjct: 196 VSMDREAIDFIAYRGDSSMRDALSLLDQVIDIREADKTITYEDVLAFMGMVDEDQIAGLV 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + G ++ + S + + + Sbjct: 256 QDVVAGDKGGVLLKFKAMREAGRDSGLVFGQLIDYLR 292 >gi|289649552|ref|ZP_06480895.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aesculi str. 2250] Length = 741 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMATDVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii DSM 2661] gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit [Methanocaldococcus jannaschii DSM 2661] Length = 516 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 77/183 (42%), Gaps = 18/183 (9%) Query: 53 FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104 F ++ LNA + + + + + S+S+F KK +I+++ + + + L ++ Sbjct: 65 FEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSELIKV 124 Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 I K + II+ +N+ + +R + V I P + + ++++ Sbjct: 125 IKK--AKNPIILTANDAYAPS-IRSLL---PYVEVIQLNPVHTNSVYKVLKKIAEKEGLD 178 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + + +++ + GD ++ N+L+ L+ ++ + + + I + + Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAAQKLPDRKREANIFDALRV 234 Query: 225 TIQ 227 ++ Sbjct: 235 ILK 237 >gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis HTCC2597] Length = 581 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ E I+ +A ++ G + + L + T Sbjct: 189 EPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 246 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ ++G A+ A A+L Sbjct: 247 VRAMLGLADRGRVMDLFEMVMRGDAAAALTELSAQYADGADPLAVLRDL 295 >gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28] Length = 435 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 78 SLFSKK-KIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 SLF + +IIL + + ++ L + E+I ++ II+ +N + R Sbjct: 97 SLFGFRGRIILFDEVDGLNVREDRGGLAAIVELIRESTW--PIIMTANN-PWDPKFR--- 150 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 E I P + ++ ++ ++A +++ GGD R + L Sbjct: 151 ELRDEAEVIQLKPLRENDILTILRRICNNEGIKCEEDALKLIAEASGGD---VRAAINDL 207 Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 + ++T+ V + H + ++++ + ++ F Sbjct: 208 QAAAEGKKVLTKDDVT-VTERAHQFDMFKVLDKVFHARRFDEARSVTFL 255 >gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_APKG10F13] Length = 323 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 5/136 (3%) Query: 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 KI E + P + ++ + ++ +A + L GD R Sbjct: 142 KIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGD---LRRA 198 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMP 246 + L D IT + V + + E++ +QG A D + + Sbjct: 199 INSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNFAGARERLDALIITYGLA 258 Query: 247 SHALLHGFLQKFQLLE 262 +L + + LE Sbjct: 259 GEDILRQMHRTVRELE 274 >gi|73949064|ref|XP_857902.1| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolog isoform 2 [Canis familiaris] Length = 1271 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 630 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 793 Query: 310 LHKI 313 + K+ Sbjct: 794 MRKL 797 >gi|30684540|ref|NP_193617.2| ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] Length = 1111 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 67/207 (32%), Gaps = 33/207 (15%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ 200 ++ ++ + I K+A +++ + G + L++LS L + Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQRISVPLVQ 664 Query: 201 ------ITEQHVKDI-ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253 ++ H+K + + + ++++ + N + + + + AL Sbjct: 665 ELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL--- 721 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L + + F K K + ++ + +E + +R+ L + Sbjct: 722 ----MSQLATVITDILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTL 769 Query: 314 DHRIHLAR-KKKYLEKNIIFQTILYIA 339 R L + +L +A Sbjct: 770 SEAEKQLRVSNDKL--TWLTAALLQLA 794 >gi|75764869|ref|ZP_00744233.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487644|gb|EAO51496.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 330 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210 E+ L +I+ EA GGD ++ N EL LSS+ +D IT + ++ + Sbjct: 167 EKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 D H + + + A+ + + Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG 270 >gi|331015914|gb|EGH95970.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 736 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp. TrichCH4B] Length = 625 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++DL+ I+++A ++ G + + L + T Sbjct: 215 EPEVMIDLLRRIATNETAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 272 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++++ ++G A+ A A+L Sbjct: 273 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSGQYAEGADPMAVLRDL 321 >gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum intermedium LMG 3301] Length = 635 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 64/203 (31%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + ++ + ++ G S + + +T + Sbjct: 219 ESGTLAAHLRRIAEAEEIAVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGAVTAEA 276 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 277 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 336 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E ++ ++ R W ++ + + ++D + Sbjct: 337 FTPDVAEDVSLSEDERVRGRE----FAQKLSVRVLSRTW--QMLLKGIAEVDTATRPVQA 390 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 391 AEMLLIRLAHAADLPTLDEAIRG 413 >gi|66045069|ref|YP_234910.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae B728a] gi|63255776|gb|AAY36872.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae B728a] Length = 736 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii ATCC BAA-1640] Length = 589 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 11/168 (6%) Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEKFTSVLAISCYPDNKIHLM 151 K + L +I+ + + I I+ + EI+ L + ++I + Sbjct: 131 SKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKRISI-------DTIS 183 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 I E L KSI + ++ G + + L ++ + D I+ + +++ Sbjct: 184 KNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVV--AINDNNISYDKIIEVLG 241 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 T + E+ + + + IM L+ G + F+ Sbjct: 242 VTTEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFR 289 >gi|255021192|ref|ZP_05293242.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] gi|254969307|gb|EET26819.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus caldus ATCC 51756] Length = 572 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 11/139 (7%), Positives = 37/139 (26%), Gaps = 2/139 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 + + + + + A ++L G + + L + + Q Sbjct: 193 EPARIRERLRTIVDAEGIAAEDTALELLSHAADGSLRDALSLLDQAI--VHGAGTVAAQA 250 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+D++ + ++ ++ + L + LL ++ L Sbjct: 251 VRDMLGVAPEAVVWSLVTGLLRDDGPTVLRLVQEHMDLGQDPAGLLDAVIEALHRLSLAR 310 Query: 266 IIKECSNISFEKIIQKTEK 284 +++ Sbjct: 311 YVEDVRRALPPPWDGGALP 329 >gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3] Length = 562 Score = 38.8 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|73949062|ref|XP_544258.2| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolog isoform 1 [Canis familiaris] Length = 1241 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 600 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 651 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 652 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 703 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 704 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 763 Query: 310 LHKI 313 + K+ Sbjct: 764 MRKL 767 >gi|47213443|emb|CAF89550.1| unnamed protein product [Tetraodon nigroviridis] Length = 1389 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 16/196 (8%) Query: 159 LIGQKSISKEAKQ-ILLANLGGDRIASRNELQKLSSYCLE---DILITEQHVKDIICDTH 214 K ++ A L + +R S NEL+ L E ++ + Sbjct: 1075 AEEAKGKAQAALDKALASRKNTER--SNNELRDLIKQIREFLMQEEADPDSIEAVANRVL 1132 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECS 271 L I +I + ++S A+L ++K + L Sbjct: 1133 ELSI-----PASPLQIRHLAEEIKEKVSSLSNVDAILQQTRDDIRKAEQLLLEAKTARHQ 1187 Query: 272 NISFEKIIQKTEKNIIPMKRN--ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329 + + + +K + + ++++R +++ + +++++ L Sbjct: 1188 AENAKATTEAVKKALFNCRTAQTSAEKAIRTAKADILDTEARLAQIELKTSKRERDLNVT 1247 Query: 330 IIFQTILYIAQTACKN 345 I+ L A K Sbjct: 1248 IVHLETLGREINALKT 1263 >gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae] Length = 353 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 34/216 (15%) Query: 93 TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKN--NTLRKIAEKFTSVL--AISCY--- 143 + K L K+ ++I +++ + K+ N LR++ EK+T + I C Sbjct: 100 AQTKGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLA 159 Query: 144 ----------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 P ++ ++ ++ + ++ + ++ LL GD R Sbjct: 160 SIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDM---RTV 216 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + L S + +++E V I +++++ + A + S + Sbjct: 217 INTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLL---NQTAKTCMNKIKKSLFEN 273 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L + L + + + + II Sbjct: 274 GYALQDVITH---LHDLAFSMDIPDSAMSAIIVGLG 306 >gi|332833615|ref|XP_507656.3| PREDICTED: regulator of nonsense transcripts 2 isoform 2 [Pan troglodytes] gi|332833617|ref|XP_003312506.1| PREDICTED: regulator of nonsense transcripts 2 isoform 1 [Pan troglodytes] Length = 1272 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|257054072|ref|YP_003131905.1| replication factor C large subunit [Halorhabdus utahensis DSM 12940] gi|256692835|gb|ACV13172.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940] Length = 507 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 74/245 (30%), Gaps = 29/245 (11%) Query: 5 ESHKFIQKSTKNLFLSHFVFIFYG-SDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63 ++ +++ ++ + YG G ++ P + + Sbjct: 21 KARDALREWAESWPDHREAVVLYGSPGIGK-----TSAAHALANDMDWPTIELNASDSRT 75 Query: 64 QKNISTFWNEIN---STSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHII 114 + I E + + +++++++ ++ + ++ + ++ Sbjct: 76 KDVIEQVAGEAAKSGTLAQGGSGRRLVILDEADNLHGNVDRGGTRAITSLVKEAQQPIVL 135 Query: 115 II-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 I + E+ K LR I + ++ ++ + KEA + + Sbjct: 136 IANEFYEMSKG--LRNAC------RDIEFRDVSTRSIVPVLRDICRQEDVGFEKEALRKI 187 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI-QGKIYN 232 GD R + L + +TE V D I ++ + + Sbjct: 188 AEMNDGD---LRGAINDLQAIAEGRDTVTEDDVVTSERDRTTD-IFSFLDTVLKEADAQE 243 Query: 233 AIMLA 237 A+ + Sbjct: 244 ALEAS 248 >gi|194227172|ref|XP_001916636.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog (yeast) [Equus caballus] Length = 1268 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792 Query: 310 LHKI 313 + K+ Sbjct: 793 MRKL 796 >gi|126660297|ref|ZP_01731411.1| hypothetical protein CY0110_31690 [Cyanothece sp. CCY0110] gi|126618403|gb|EAZ89158.1| hypothetical protein CY0110_31690 [Cyanothece sp. CCY0110] Length = 301 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 32/256 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G D E I + K F++ L ++ S LFS Sbjct: 2 LYVIAGDDAFRKSEKIAEIIKVGGCER---FNVTTLEDA---------ISDALSLGLFS- 48 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---SVLA 139 KK ++ E K LE ++ +++I+ + L K K + A Sbjct: 49 KKAMVFEGKEIPYKDSKPLEPLLT---IENVVILDVTTVDGRTKLGKWLNKQKCVERINA 105 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE----AKQILLANLGGDRIASRNELQKLSSYC 195 ++ + ++K I+ L + + + AKQ LL +G D + EL+ + +Y Sbjct: 106 LNQFQEDK------IKAELAMRSLKLGLDLSIHAKQYLLEAVGPDIGRMQRELELIKAYF 159 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 ED ++ + + ++ D + + + + + + +L + Sbjct: 160 GEDQVLATE-LPALVPDYAQNSYQ--LAKALTEEPETVYERTQSLINLGIHPLQILATLI 216 Query: 256 QKFQLLEKIHIIKECS 271 + + L I E Sbjct: 217 NRIEKLMLTAIGLESG 232 >gi|7243197|dbj|BAA92646.1| KIAA1408 protein [Homo sapiens] Length = 1298 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 657 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 708 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 709 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 760 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 761 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 820 Query: 310 LHKI 313 + K+ Sbjct: 821 MRKL 824 >gi|330954421|gb|EGH54681.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae Cit 7] Length = 736 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|206895949|ref|YP_002247233.1| holliday junction DNA helicase RuvB [Coprothermobacter proteolyticus DSM 5265] gi|206738566|gb|ACI17644.1| holliday junction DNA helicase RuvB [Coprothermobacter proteolyticus DSM 5265] Length = 320 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%) Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 Y + + + +I+E L IS EA + + G + +++ Y + L T Sbjct: 170 YGEEE--IGKIIKEELAQQGLDISAEALREIAKRSRGTPREALQICRRVVEYAALNHLET 227 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 V II ++L I+E + + I +L L Sbjct: 228 L-DVGAIIDLFNLLNIDEYGLSPLDKD---YIRTLAETFKGGPSGIRVLASAL 276 >gi|330960239|gb|EGH60499.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. maculicola str. ES4326] Length = 717 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|260951433|ref|XP_002620013.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720] gi|238847585|gb|EEQ37049.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720] Length = 256 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 59 NALEIQKNISTFWNEINSTSLFS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIII 116 + I + + ++ +FS K+I+++ V L II + N I Sbjct: 9 DDRGIDVVRNRIKDFASTMQIFSRGFKLIILDEADAMTAVAQNSLRRIIERYTKNTRFCI 68 Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQ 171 L + K L C P ++ + D ++ + + +I+ EA+ Sbjct: 69 ----------LANYSHKLNPALLSRCTRFRFNPISEEAIRDRVQNVIQQEKLNITPEAES 118 Query: 172 ILLANLGGDRIASRNELQ--KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229 LL+ GD + N LQ K + + + + + I H IE ++++ ++ Sbjct: 119 ALLSLSKGDMRRALNVLQACKAAL-ENPEDQVDIDMIYECIGAPHPQDIEAVLDSVLKDD 177 Query: 230 IYNAIMLADFFLASK 244 I+ D + SK Sbjct: 178 WTTCILTFDRYKKSK 192 >gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii OhILAs] gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii OhILAs] Length = 563 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221 +EA +++ N G + + L++ SY + +T +V +I+ + +I ++ Sbjct: 195 GIKTEEEALRLIALNSDGALRDALSILEQCISYT--EDTLTYTNVVNILGMVNYEFIFDL 252 Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--LLEKIHIIKECSNISFEKII 279 ++ + + L + L + L+ + F+ LL K+++ + E+ Sbjct: 253 VDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQLDELLTLPEERQ 312 Query: 280 QKTE 283 + Sbjct: 313 DRLR 316 >gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM 1251] gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251] Length = 393 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L L+ +L + S EA + L+ + GGD +R+ L+ L IT + Sbjct: 152 NEALSRLLRRALDSSDITCSDEALEYLIKSSGGD---ARSMLKLLEFASNIGTHITLDIL 208 Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 K + + + E I + + AI + + + Sbjct: 209 KSLRPNALSVGSSEAGVHYDLSSAMIKSIRGSDMDAAIYYLARLIDGGESAEFIARRL 266 >gi|330981944|gb|EGH80047.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 736 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|314928456|gb|EFS92287.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes HL044PA1] Length = 773 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 I + + ++ +++ +L LGG D ++ + Sbjct: 115 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 158 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 ++ T ++EI++A G + + D + L++ + L + Sbjct: 159 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 218 Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325 + + + P + L + + + + + R Sbjct: 219 AVPDVCRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 270 Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349 + + + +L A T + + Sbjct: 271 PRLHLELMCSRILLPGADTDGRGIHAR 297 >gi|11693132|ref|NP_056357.1| regulator of nonsense transcripts 2 [Homo sapiens] gi|18375676|ref|NP_542166.1| regulator of nonsense transcripts 2 [Homo sapiens] gi|60390647|sp|Q9HAU5|RENT2_HUMAN RecName: Full=Regulator of nonsense transcripts 2; AltName: Full=Nonsense mRNA reducing factor 2; AltName: Full=Up-frameshift suppressor 2 homolog; Short=hUpf2 gi|11228926|gb|AAG33225.1|AF301013_1 regulator of nonsense transcripts 2 [Homo sapiens] gi|12620404|gb|AAG60689.1|AF318574_1 UPF2 [Homo sapiens] gi|55662144|emb|CAH73458.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo sapiens] gi|55961866|emb|CAI16755.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo sapiens] gi|109731814|gb|AAI14965.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo sapiens] gi|109732272|gb|AAI15738.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo sapiens] gi|119606734|gb|EAW86328.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_a [Homo sapiens] gi|119606735|gb|EAW86329.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_a [Homo sapiens] gi|119606736|gb|EAW86330.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_a [Homo sapiens] gi|119606738|gb|EAW86332.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_a [Homo sapiens] gi|119606739|gb|EAW86333.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_a [Homo sapiens] gi|208965670|dbj|BAG72849.1| UPF2 regulator of nonsense transcripts homolog [synthetic construct] Length = 1272 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis mellifera] Length = 303 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%) Query: 108 NICNHIIIIKSNEIK--KNNTLRKIAEKFTSVL--AISCY-------------------P 144 I++ +++ + LR+ EK + + C P Sbjct: 108 PPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKP 167 Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD-RIAS--RNELQKLSSYCLEDILI 201 + +++ +E + K ++ GGD R A + KL +DI I Sbjct: 168 LGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLK---GKDIEI 224 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 T V +II +++E+I+ A D F+ + ++ Sbjct: 225 TVDDVLEIIGIVPDKWLDELIDVCKTKDYSKAEEFVDQFMLEAYATSQVIEQL 277 >gi|12232320|gb|AAG48509.1| hUPF2 [Homo sapiens] Length = 1272 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|302185103|ref|ZP_07261776.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. syringae 642] Length = 736 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + +++ A ++G + + +L L + + E Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271] Length = 562 Score = 38.4 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108] Length = 543 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 17/171 (9%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM--DL 153 + L + + + N + I+ + +I K + C + + DL Sbjct: 133 GAFNALLKTLEEPPKNVVFILATTDI----------HKVPVTIISRCQRFDFRRIGQKDL 182 Query: 154 IEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 IE + I +EA Q++ G + + L + ++ IT+ V +++ Sbjct: 183 IERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFA--SGEITKNDVSEVV 240 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + IE + + + L + + + +L + + L Sbjct: 241 GRISIEKIEMCVQYLLTRNTTEILSLVNEVILNGKEPIYVLDDLIGYLRDL 291 >gi|116510915|ref|YP_808131.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris SK11] gi|116106569|gb|ABJ71709.1| Recombination protein MgsA [Lactococcus lactis subsp. cremoris SK11] Length = 419 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 20/131 (15%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210 +I +A L+ + GD ++ N L+ L+ + +T +++ + Sbjct: 170 FDFDVTIDDDALYFLVHSTNGDLRSTFNALE-LAVLSSNEHRVTLDDMENSLQRKAATFD 228 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 D H + + + + ++ A + L + L + Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLAR---RLTVMAYE- 279 Query: 269 ECSNISFEKII 279 + + + + Sbjct: 280 DIGLANPDAAV 290 >gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 21/131 (16%) Query: 146 NKIHLMDLIEESLLIGQKS-------ISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196 K + LI +L ++ I ++A + L GGD + N ++ Sbjct: 169 EKEDIRRLIMRALTDEERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVLTTERS 228 Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 I IT V + I D H I I + A+ L + Sbjct: 229 EDGKIHITIDVVSECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVFYLAKMLYAG 288 Query: 245 MPSHALLHGFL 255 + + Sbjct: 289 EDVKFIARRIM 299 >gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75] Length = 391 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L +++L + +K I AK LL N GD A L L + IT + Sbjct: 150 NKSDLDRLCDKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLET 206 Query: 206 VKDI----ICDTHVLY------IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + + D +I + +I +A + Sbjct: 207 LQSLRPHSLNDGSYSNDTHYNLTSALIKSLRGSDENASIYYLAHLIAGGENPEFIARRL 265 >gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187] gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus H3081.97] gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187] gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26] gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 562 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] Length = 421 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 90/317 (28%), Gaps = 34/317 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG + + SI + +++ +K++ E + + Sbjct: 42 ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +IL E +K D L + II+I + + + T + + Sbjct: 94 LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150 Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195 K L I + L SI +A + GGD ++ N L+ Sbjct: 151 PELIKQALERAIHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210 Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 I IT + ++ + D H + + A+ + + Sbjct: 211 DGVIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304 + + E I + + IQ E+ P R + + + Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLHAIQTAERVGFPEARIPLANAVIELCLSP 327 Query: 305 LVRETLHKIDHRIHLAR 321 + ID + R Sbjct: 328 KSNSAILAIDEALADIR 344 >gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45] gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45] Length = 588 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + T + Sbjct: 189 EPEVMIALLRKIASSESAEITDDALALITRAAEGSARDATSLLDQAI--SHGAGETTAEQ 246 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ ++G A+ A A+L Sbjct: 247 VRAMLGLADRGRVMDLFEKIMRGDAPGALTELSEQYADGADPLAVLRDL 295 >gi|251772853|gb|EES53412.1| probable DNA polymerase III, delta subunit [Leptospirillum ferrodiazotrophum] Length = 320 Score = 38.4 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 84/259 (32%), Gaps = 18/259 (6%) Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 I LF K+I+ I +++ D + + +++++ TL Sbjct: 41 RLLGRIRERPLFGGKRILWISKAERAEEL-DPKALLEKNRHSSTVVVLE----TPEKTLL 95 Query: 129 KIAEKFT-SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN- 186 ++ LA+ P ++ + + E ++K+A LL G Sbjct: 96 SWSKAIPAYSLALPSKPADREAWLHFLAE---RHALRLAKDAIAPLLTTFEGSPGPVDQL 152 Query: 187 --ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 EL+K I+ ++ ++H + E++ ++G FL + Sbjct: 153 FSELKK----EGVGPTISAVLLQKHGVESHYKTVFELLRG-LEGNDKRFFAEWRRFLDNG 207 Query: 245 MPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 L+ ++++L + + + + + P + S R Sbjct: 208 QSPFGLISLLHRQWKLYRIAQGTLAQGRGEKEAARMLASIAGVQPFVADSAVRSARRLPP 267 Query: 304 NLVRETLHKIDHRIHLARK 322 N V + + + L + Sbjct: 268 NGVSQGIDALAEADRLLKS 286 >gi|148676029|gb|EDL07976.1| mCG18140 [Mus musculus] Length = 1268 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792 Query: 310 LHKI 313 + K+ Sbjct: 793 MRKL 796 >gi|45686327|ref|YP_003912.1| putative tail fiber protein [Enterobacteria phage T1] gi|37787962|gb|AAP49966.1| putative tail fiber protein [Enterobacteria phage T1] Length = 1172 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK N RK AE S+ I+ D + IE+ IS + L + + Sbjct: 874 MKKENGKRK-AEYTKSLKLIA---DETQARVTAIEQLKASFGDQISA-SNSELREVIATE 928 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI--INATIQGKIYNAIMLAD 238 A E+ +L + +DI + ++++I EI + A I I ++ Sbjct: 929 TEALSREIDQLKAQIGDDIQASLTDIREVIATETEALSREIDQLKAQIGDDIQASLTDIR 988 Query: 239 FFLASKM 245 +A++ Sbjct: 989 EAIANET 995 >gi|325000877|ref|ZP_08121989.1| hypothetical protein PseP1_19027 [Pseudonocardia sp. P1] Length = 334 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 96/311 (30%), Gaps = 16/311 (5%) Query: 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73 T++ + + G ++ L ++ + + L E+ Sbjct: 13 TRDTAPPDPLQLVVGDEEFLAERAVSDLVRRVRQQ-DAEAELRRFRTSEVA--PGELAGH 69 Query: 74 INSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIA 131 + S SLF++ ++I++ + K ++ + + + +++++ + K L + Sbjct: 70 L-SPSLFAEARVIVLTHGQDATKDMVAAIADYVRDPAEGIVLVVQHAGGAKGKAVLDLLR 128 Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 + V C D + + SI+ A +L+ +G D + Sbjct: 129 KAGAHVTT--CNRITRADERSDFVHAEVRRNGGSITNGALAVLVEAVGSDLRELAAAAGQ 186 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L S I E V+ + +A + G A+ + L +P + Sbjct: 187 LVSDTGG--TIDEAGVRRYHRGRAESSGFAVADAAVAGDRRGALEALRWALVLGVPHVLI 244 Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 + + + ++ + +++ Q +R W+ + + Sbjct: 245 ADALA---DSVRTLAKVGSAGRGDPNRMAGELGMPPWKIRKA--QGLVRQWHPEQLAVAI 299 Query: 311 HKIDHRIHLAR 321 + Sbjct: 300 AATAEVNADVK 310 >gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342] Length = 558 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM 12940] gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940] Length = 326 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 11/138 (7%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + I + ++++ + L+ GGD R + L + + + E+ V Sbjct: 170 DEAVEAQIRQIAQEEVIDVTEDGIEALVYVAGGDM---RKAINGLQAASMSGDTVNEEAV 226 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIH 265 +I I E+++ + G A D L + ++ L + Sbjct: 227 FEITSTARPEDIREMVDLALDGDFTAARSRLDTLLTEEGIAGGDII-------DQLHRTV 279 Query: 266 IIKECSNISFEKIIQKTE 283 + S+ + +++ + Sbjct: 280 WEFDLSDAAAVRVLDRVG 297 >gi|124487283|ref|NP_001074601.1| regulator of nonsense transcripts 2 [Mus musculus] gi|123232545|emb|CAM23347.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus] gi|123232982|emb|CAM23675.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus] gi|123233510|emb|CAM20353.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus] gi|187951027|gb|AAI38359.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus] gi|187951927|gb|AAI38360.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus] Length = 1269 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792 Query: 310 LHKI 313 + K+ Sbjct: 793 MRKL 796 >gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis serovar finitimus YBT-020] Length = 562 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|297624591|ref|YP_003706025.1| DNA polymerase III subunits gamma and tau [Truepera radiovictrix DSM 17093] gi|297165771|gb|ADI15482.1| DNA polymerase III, subunits gamma and tau [Truepera radiovictrix DSM 17093] Length = 522 Score = 38.4 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 21/220 (9%), Positives = 66/220 (30%), Gaps = 19/220 (8%) Query: 54 SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNI 109 + L+A ++I ++ SL ++ + + + + K + L + + + Sbjct: 85 DVTELDAASNNSVEDIRDLREKVRLASLRGGRR-VWVLDEAHMLSKSASNALLKTLEEPP 143 Query: 110 CNHIIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166 + I+ + ++ R +F + ++ + + S Sbjct: 144 EGLVFILATTEPEKLPPTILSRTQHFRFRRL--------SEAEIASKLRALCHEAGVSAE 195 Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 + A ++ G + + L++L + IT Q + + ++ + Sbjct: 196 EGALALVARAADGAMRDAESLLERLLT---TGAPITLQDAEGALGLPPQARLQALARHLA 252 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 G + + A L + + + Sbjct: 253 AGDLASLFAEASALYRDGFAPRTLAERLAAELRGALYARV 292 >gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR] gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR] Length = 445 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 41/261 (15%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 IFYG G K I+ T F V + + N ++ ++ Sbjct: 55 VIFYGP-PGTGK---TTLAKVIANTTKAFFVQVNAVTSGVAELREVIQNAKERLGMYGQR 110 Query: 84 KIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 I+ I+ N S + +L +E+ +I N + + ++ + + K E Sbjct: 111 TILFIDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVNAP-LRSRSRIFK-FESL 168 Query: 135 TSVLAISCYPDNKIHLM--DLIEES--LLIGQKSISKEAKQILLANLGGDRIASRNELQK 190 ++ D+ L+ L ++ L + +++EA + L+ GD + N L+ Sbjct: 169 SN--------DDIRKLLWRALQDKEAGLGNYKVDLTEEALEHLVDISSGDARTALNALEL 220 Query: 191 LSSYCLED----ILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIML 236 D IT + ++ I D H I I + A+ Sbjct: 221 AVLTTAPDEKGVRKITLEVAEESIQKRAVLYDKSGDYHYDVISAFIKSIRGSDPDAALYW 280 Query: 237 ADFFLASKMPSHALLHGFLQK 257 + ++ + Sbjct: 281 YARMTHAGEDQRFIVRRLIVH 301 >gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC 10987] gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC 10987] gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293] Length = 562 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 50/143 (34%), Gaps = 13/143 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSP 299 Query: 260 LLEKI--HIIKECSNISFEKIIQ 280 LE + ++ + + + +Q Sbjct: 300 QLEHMLERVMVDEQFRTLSEEMQ 322 >gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10] gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10] Length = 558 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 16/122 (13%) Query: 146 NKIHLMDLIEESLLIGQKSISK------EAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 ++ ++E +L ++ + E + L GD + N L+ L+ Sbjct: 299 TDDDILVILERALKTEGQNYTPTDLVDTELLKYLSTFSDGDARTALNLLE-LAMGLSTRP 357 Query: 200 LITEQHVKDII---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 IT++ +K + D H I + G A+ L S + Sbjct: 358 NITKEDIKASLTKTLVYDRAGDQHYDTISAFHKSVRGGDADAALYYLARMLQSGEDPLYI 417 Query: 251 LH 252 Sbjct: 418 AR 419 >gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533] gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533] Length = 420 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 D L+ ++E + +K I KEA I+ + GD + N L+ + + + I+ Sbjct: 154 KDISHVLIRALKEVFHLEEKQIDKEAINIIARSADGDLRVALNLLE--TIHAINGDEISI 211 Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + VK+ + H Y+ ++ A+ L + + Sbjct: 212 ESVKEFVKGQHFAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKNGDLPSVVRR 270 >gi|119606737|gb|EAW86331.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform CRA_b [Homo sapiens] Length = 1258 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|224090627|ref|XP_002309040.1| predicted protein [Populus trichocarpa] gi|222855016|gb|EEE92563.1| predicted protein [Populus trichocarpa] Length = 1464 Score = 38.4 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN-ELQKLSSYCLEDILITEQH 205 +DLI+ + Q I++EA + L A G + A + EL++L+ +T + Sbjct: 1149 AREFLDLIDAADATAQVDIAREALKRLAA-AGSVKGALQGHELRRLALCLANHGELTRLN 1207 Query: 206 --VKDIICDTHVLYIEEIINATIQGKIYNAIMLADF---FLASKMPSHALLHGFLQKFQL 260 V ++I L E +A + G + + +HA L+ Sbjct: 1208 GLVSNLIS--AGLGREAAFSAAVLGDNALMEKSWQDTGMLAEAVLHAHAHGRPTLKNLVQ 1265 Query: 261 LEKIHIIKECSNISFEKIIQKT 282 + KE + + + I Sbjct: 1266 AWNKMLQKEV-DHAPSQKIDAA 1286 >gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str. Sheeba] gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter acinonychis str. Sheeba] Length = 393 Score = 38.4 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N+ L L ++L + K I AK LL N GD A L L + IT + Sbjct: 150 NESDLDKLCSKALTLLNKQIEPSAKTYLLNNSTGDARAL---LNLLDLSAKIEDPITLET 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 +K + D + + +++G ++ +A + Sbjct: 207 LKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASLYYLARLIAGGENPEFIARRL 265 >gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159] gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159] Length = 450 Score = 38.4 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 11/112 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI----- 209 E L I EA ++L+ GD + N L+ +++ ++ IT + V Sbjct: 186 ERGLGELGLRIEPEALRLLVGLANGDARMALNTLE-VAAAGAQEGTITVELVHQAAMRRG 244 Query: 210 -----ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256 D H I + A A+ L + ++ Sbjct: 245 SVYDRAGDAHYDTISALHKAIRGSDPDAALYWLARMLEHGDDPLYVARRLVR 296 >gi|293363693|ref|ZP_06610440.1| DNA polymerase III, delta subunit [Mycoplasma alligatoris A21JP2] gi|292552737|gb|EFF41500.1| DNA polymerase III, delta subunit [Mycoplasma alligatoris A21JP2] Length = 310 Score = 38.0 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 98/267 (36%), Gaps = 23/267 (8%) Query: 73 EINSTSLFSKKKIILIEN----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNN 125 E++S S+FS+KK+ + N + +K + + + N I S E NN Sbjct: 43 EMSSISIFSEKKLFIFPNFYLFMKKDKDINFNEKKFISYLTNDSFNEYIFTFSEEKIINN 102 Query: 126 TLRKIAEK---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-KEAKQILLANLGGDR 181 + K L+ +I++ + + IS +A L L + Sbjct: 103 PFTNLVLKNSLHKEALSF-----TPSDYPKVIKKIVTENKGEISILDAL-YLAQKLPNNL 156 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 E++KL S L IT++ + + D + IN+ Sbjct: 157 ELIICEIKKLLSQSLN---ITKEIIDLSVGDYGLDDQYSFINSIATRNFSLIYKKYTERK 213 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 S +L+ L +I ++ + + +S +II+ + N I ++ +E L + Sbjct: 214 RSGDTILSLIGQLSSFVCLTHRI-VMFKKAKLSANEIIETLKLNKIRYRKA--EEFLVQY 270 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEK 328 ++ V + + ++ ++ ++ Sbjct: 271 GQSKVLKIIKDLEKLDLDIKRTGVNDE 297 >gi|222480222|ref|YP_002566459.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] gi|254797629|sp|B9LPV1|RFCL_HALLT RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|222453124|gb|ACM57389.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 500 Score = 38.0 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 8/102 (7%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 ++ ++ + +A + + +R R + L + I + V Sbjct: 171 ARSIVPVLRDICRKEGIEFESDALERIAER---NRGDLRGAINDLQAATEGRDSIAVEDV 227 Query: 207 KDIICDT-HVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + D L + ++A + K +A A Sbjct: 228 --VTGDRDKALGLFPYLDAVL--KEESAEEALQSAYAVDETP 265 >gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16] Length = 551 Score = 38.0 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 34/216 (15%) Query: 93 TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKN--NTLRKIAEKFTSVL--AISCY--- 143 + K L K+ ++I +++ + K+ N LR++ EK+T + I C Sbjct: 315 AQTKGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLA 374 Query: 144 ----------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 P ++ ++ ++ + ++ + ++ LL GD R Sbjct: 375 SIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDM---RTV 431 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 + L S + +++E V I +++++ + A + S + Sbjct: 432 INTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLL---NQTAKTCMNKIKKSLFEN 488 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 L + L + + + + II Sbjct: 489 GYALQDVITH---LHDLAFSMDIPDSAMSAIIVGLG 521 >gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15] gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15] Length = 581 Score = 38.0 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|22299433|ref|NP_682680.1| hypothetical protein tlr1890 [Thermosynechococcus elongatus BP-1] gi|22295616|dbj|BAC09442.1| tlr1890 [Thermosynechococcus elongatus BP-1] Length = 468 Score = 38.0 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 27/139 (19%) Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFL-----------QKFQLLEKIHIIKECSNIS 274 G + AI + L + P + LL L + + + + + + S Sbjct: 62 FLGDLQGAIKAYERVLKTPTPQNQLLRLHLGVLYAEAGQGDRALKTWQFLIQEAQGATRS 121 Query: 275 FEKIIQKT--EKN-IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNII 331 +++ E ++P +++++L+ W ++ L ++ R + Sbjct: 122 TAEVLLGLWSEPPQLLPEAEPLIKQTLQGWFRD---RALERLYE--LQQRSDALMALARA 176 Query: 332 FQTILYIAQTACKNNNFYK 350 Q FY+ Sbjct: 177 AQN--------RAQGAFYR 187 >gi|194336682|ref|YP_002018476.1| DNA polymerase III, subunits gamma and tau [Pelodictyon phaeoclathratiforme BU-1] gi|194309159|gb|ACF43859.1| DNA polymerase III, subunits gamma and tau [Pelodictyon phaeoclathratiforme BU-1] Length = 401 Score = 38.0 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 72/206 (34%), Gaps = 27/206 (13%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + + + + + I I + E+ K T+ ++F I + + L + Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKR-IP-LEEIQKQLQFIC 199 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIIC 211 + Q ++ +A Q++ G +++ L ++ ++ E+ IT V +++ Sbjct: 200 D----AEQITVDGDALQLIGRKAQGSMRDAQSILDQVIAFSAENDHTGSITYSGVAELLN 255 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE--------- 262 ++ E+ +A + + +A F + + L ++ + Sbjct: 256 YIDDEHLFEVTDAVAERNAVKMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVQNLSSTR 315 Query: 263 --------KIHIIKECSNISFEKIIQ 280 + ++ N S ++Q Sbjct: 316 LVERPDAIRERYQRDAGNFSPFAVMQ 341 >gi|326405680|gb|ADZ62751.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis CV56] Length = 419 Score = 38.0 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210 +I +A L+ + GD ++ N L+ L+ E+ +T +++ + Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 D H + + + + ++ A + L ++ Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273 >gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5] gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5] Length = 421 Score = 38.0 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 34/317 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG + + SI + +++ +K++ E + + Sbjct: 42 ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +IL E +K D L + II+I + + + T + + Sbjct: 94 LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150 Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195 + K L + + L SI +A + GGD ++ N L+ Sbjct: 151 PDLIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210 Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +I IT + ++ + D H + + A+ + + Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304 + + E I + + IQ E+ P R + + + Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327 Query: 305 LVRETLHKIDHRIHLAR 321 + ID + R Sbjct: 328 KSNSAILAIDEALADIR 344 >gi|289754520|ref|ZP_06513898.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289695107|gb|EFD62536.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 312 Score = 38.0 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 49 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276 Query: 308 ETLHKIDH 315 + + Sbjct: 277 TAMRLVAE 284 >gi|215431356|ref|ZP_03429275.1| hypothetical protein MtubE_11878 [Mycobacterium tuberculosis EAS054] Length = 318 Score = 38.0 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 55 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282 Query: 308 ETLHKIDH 315 + + Sbjct: 283 TAMRLVAE 290 >gi|260789910|ref|XP_002589987.1| hypothetical protein BRAFLDRAFT_81620 [Branchiostoma floridae] gi|229275174|gb|EEN45998.1| hypothetical protein BRAFLDRAFT_81620 [Branchiostoma floridae] Length = 696 Score = 38.0 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 18/142 (12%) Query: 29 SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 +D+GL+ E I T D V +N ++ + +E + + Sbjct: 353 NDRGLVAEQTTGAPALIPPTLRD---RVQVNGSDVIMDPVLVSDE--------GQYTCTV 401 Query: 89 ENLSTEKKVLDCLEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEK--FTSVLAISC 142 + T + D ++ ++ +I I+ + +++ L + +S Sbjct: 402 LHRDTFQSFTDTVDLLVRVQPEAPVITIEGSPAAGQLQPGTNLTLVCHSWWGRPAAQLSW 461 Query: 143 YPDNKIHLMDLIEESLLIGQKS 164 Y D + + ++ Sbjct: 462 YRD-GQVVNGVYTSAVDADGYG 482 >gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] Length = 457 Score = 38.0 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 18/117 (15%) Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-----EDILITEQH 205 L++E L + ++ +A+ L+ GGD +R L L + + IT H Sbjct: 192 AALVDERGLDERFTLDDDARDHLVRMAGGD---ARRALTALEAGAGVATDAGEKTITLAH 248 Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 V+ + D H +I + + A+ L + + Sbjct: 249 VEQAMAAAAVRYDRAGDQHYDVASALIKSMRGSDVDAALHYLARMLEAGEDPRFIAR 305 >gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537] Length = 428 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 21/164 (12%) Query: 143 YPDNKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 YP + + I+ +L +I +A + L GD ++ N L+ Sbjct: 149 YPLTENDIHQAIQRTLNDKENGLGNYAVTIDDQAMKQLTQATNGDLRSALNALELAVLST 208 Query: 196 LEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + +T ++++ D H I + + + A+ A + Sbjct: 209 SPENDDTIHLTLSAIEEVTQRKALSADKDGDAHYDVISALQKSIRGSDVDAALHYAARII 268 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 S + + + ++ + + IS + Q Sbjct: 269 ESGDLNILIRRLAVIAYEDIGLANPSAAQHTISAIQAAQMLGLP 312 >gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales bacterium HTCC2083] gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae bacterium HTCC2083] Length = 583 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 45/138 (32%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +++ I+++A ++ G + + L + T + Sbjct: 190 EPEDMIGMLQRIAAGEHAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTVEQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ ++G A+ A+ A+L + + + Sbjct: 248 VRAMLGLADRGRVLDLYQMIMRGDAAAALTELGEQYAAGADPMAVLRDLAEITHWISVVK 307 Query: 266 IIKECSNISFEKIIQKTE 283 I + ++ ++ Sbjct: 308 ITPDAADDPTVSPDERAR 325 >gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1] gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1] Length = 463 Score = 38.0 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 23/132 (17%) Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--- 195 + HL L + +L + EA+ L+ GGD N L+ L+ Sbjct: 170 EEHHLSILFDRALSDPERGYGKISVQVDPEARAHLIRVSGGDARNLLNALE-LAVESTPP 228 Query: 196 --LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 IT ++ I D H I I + A+ LA+ Sbjct: 229 DENGVRHITLDVAQESIQRRAVLYDKNGDAHYDTISAFIKSVRGSDPDAALYWLAKMLAA 288 Query: 244 KMPSHALLHGFL 255 +L + Sbjct: 289 GEDPRFILRRLI 300 >gi|310779061|ref|YP_003967394.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] gi|309748384|gb|ADO83046.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus DSM 2926] Length = 486 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 21/223 (9%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 I ++IN +KK+ +I+ K+ + L + + + + + I+ Sbjct: 102 DEIRQLKDKINYRPARGRKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVLFIL------- 154 Query: 124 NNTLRKIAEKFTSVLAI--SCYPDNKIHLMD-LIEESL----LIGQKSISKEAKQILLAN 176 E + I C + + + L + E+ ++ Sbjct: 155 -----ATTEPDKILPTIISRCQRYDFKPISFESTRDRLLEIGKSEGIEVDDESLLLIYEK 209 Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 GG + + +KL S C + IT + + ++ + E + +G Y + Sbjct: 210 AGGSMRDAISIFEKLISSCYGES-ITIEKSQKVLGVIPEKQLMEFLQIAREGDSYKGVKF 268 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279 D + + + + L + + I Sbjct: 269 LDKLWNGSVNIESFFRDLAKLSKELMLKDELTPEEGMPIIGAI 311 >gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium HTCC2255] Length = 594 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 7/112 (6%) Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILIT 202 PD+ + L+ I ES + IS++A ++ G ++R+ + L Sbjct: 194 PDDMMELLKKIAES---EEAKISQDALALI---TRGSEGSARDAISLLDQAIAHGAGETN 247 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G+ A+ A A+L Sbjct: 248 ADQVRAMLGLADRGRVLDLFDMIMRGQADKALEELSGQYADGADPLAILRDL 299 >gi|62185028|ref|YP_219813.1| hypothetical protein CAB399 [Chlamydophila abortus S26/3] gi|62148095|emb|CAH63852.1| putative DNA-binding protein [Chlamydophila abortus S26/3] Length = 311 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 90/276 (32%), Gaps = 30/276 (10%) Query: 67 ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125 IS S LF+ ++++ I + D L + +I+ + K + Sbjct: 54 ISDLSQWTESYGLFASREVVSIFQAEKLSSQTRDFLARYARNPHPHLTLILFT---TKQS 110 Query: 126 TLRKIAEKFTSVLAISCY----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GD 180 + + ++ S + +S + D + + L+ + + S S + + Sbjct: 111 FFQSLRKELPSAVFLSLFGEWQSDAEKRMAILLSQKASLLGISCSLALASAFIKKFPQAE 170 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 E KL + ++ +++ + + + ++ +A Q + + Sbjct: 171 MHNLLGEFHKLLCCLGKKQVLEYNDIENFVVKQEQVSLWKLRDAVFQRNTSASQAMLQAL 230 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 L L FL+ Q L + ++E + K+ + Sbjct: 231 LHEHGEEPLGLIAFLR-GQCLYGLRSLEEAAGD---------RKHRFFV----------A 270 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336 + K + + L + + + + + I +T+L Sbjct: 271 YGKERLYQALSYLFYAESIIKNNAQ-DSIIAMETLL 305 >gi|121605884|ref|YP_983213.1| chromosomal replication initiator DnaA [Polaromonas naphthalenivorans CJ2] gi|120594853|gb|ABM38292.1| Chromosomal replication initiator, DnaA [Polaromonas naphthalenivorans CJ2] Length = 235 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Query: 88 IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKF---TSVLAISCY 143 + + ++ + + + + ++ + + + LR+ +V A+ Sbjct: 107 LYTPAQQRSAFNWFVNALSTDDGHPRWVVAAGNVPPADLPLREDLRTRLGWGNVFALQAL 166 Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200 D++ +I+ S+S E +L + D + L KL SY L+ Sbjct: 167 SDDERR--AVIKREADARGFSLSDEVTDFMLTHFSRDLGSLMQLLDKLDSYALQTKR 221 >gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto BEST195] Length = 421 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 34/317 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG + + SI + +++ +K++ E + + Sbjct: 42 ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +IL E +K D L + II+I + + + T + + Sbjct: 94 LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150 Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195 + K L + + L SI +A + GGD ++ N L+ Sbjct: 151 PDLIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210 Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +I IT + ++ + D H + + A+ + + Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304 + + E I + + IQ E+ P R + + + Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327 Query: 305 LVRETLHKIDHRIHLAR 321 + ID + R Sbjct: 328 KSNSAILAIDEALADIR 344 >gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] Length = 431 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 24/140 (17%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-----EDILITEQHVKDI 209 + L + I+ +A + ++ GD + N L+ L+S+ ++I VK++ Sbjct: 184 DRGLGKKKLQITDDAIEEIVRFANGDARIALNTLE-LASFMASPLEDGRLMIDRDVVKEV 242 Query: 210 I----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I D H I I + A+ L S + + Sbjct: 243 IGKRVFRYDQKGDEHYHTISAFIKSIRGSDPDAALYYLAKMLLSGEDPRFIARRLI---- 298 Query: 260 LLEKIHIIKECSNISFEKII 279 IH ++ I+ Sbjct: 299 ----IHAAEDIGMADPFAIV 314 >gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1] gi|158513389|sp|A3DNV8|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1] Length = 423 Score = 38.0 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 76/201 (37%), Gaps = 27/201 (13%) Query: 19 LSHFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NE 73 S + YG L+ N++ I F +++I Sbjct: 41 PSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRR--------RQDIERIAKTA 92 Query: 74 INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128 SLF++ KIIL++ + ++ +D + ++ I + +++ +N + L+ Sbjct: 93 AFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLE--ITRYPVVMTANN-PWDQKLK 149 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 + + L I+ ++ ++ +++ + + A + + GD ++ N+L Sbjct: 150 PLRDAS---LMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLRSAINDL 206 Query: 189 QKLSSYCLEDILITEQHVKDI 209 Q + +T V+++ Sbjct: 207 QAI---AEGFGRVTLNWVREL 224 >gi|313680933|ref|YP_004058672.1| DNA polymerase III subunits gamma/tau [Oceanithermus profundus DSM 14977] gi|313153648|gb|ADR37499.1| DNA polymerase III, subunits gamma and tau [Oceanithermus profundus DSM 14977] Length = 615 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 22/233 (9%) Query: 42 KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDC 100 + + H + + +++ I L + +K+I+++ K + Sbjct: 80 CRMVREDRHPDVVEIDAASNNSVEDVRELRERILLAPLVAPRKVIILDEAHMMSKSAFNA 139 Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDL 153 L + + + + I I E I ++ + Sbjct: 140 LLKTLEEPPEHVIFIF------------ATTEPERMPATILSRTQHFRFRRLSEEEIAGK 187 Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + EA +++ GG + + L +L L+ IT Q ++ + Sbjct: 188 LAAVLEAEGRRAEPEALRLIARMSGGAMRDAESILDRLL--ALDVDPITRQAAEEALGLP 245 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 + + A G++ A+ A + + L Q Q + Sbjct: 246 PAERVAAVAAALDSGEVDRAVAEAQRLFSEGYSARTLTEQLAQALQAGLYARL 298 >gi|125622982|ref|YP_001031465.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris MG1363] gi|124491790|emb|CAL96710.1| chromosome segregation helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300069723|gb|ADJ59123.1| recombination factor protein RarA [Lactococcus lactis subsp. cremoris NZ9000] Length = 419 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 20/131 (15%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210 +I +A L+ + GD ++ N L+ L+ + +T +++ + Sbjct: 170 FDFDVTIEDDALYFLVHSTNGDLRSTFNALE-LAVLSSNEHRVTLDDMENSLQRKAATFD 228 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 D H + + + + ++ A + L + L + Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLAR---RLTVMAYE- 279 Query: 269 ECSNISFEKII 279 + + + + Sbjct: 280 DIGLANPDAAV 290 >gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039] Length = 581 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|281490561|ref|YP_003352541.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis KF147] gi|281374379|gb|ADA63912.1| Chromosome segregation helicase, ATPase, AAA family [Lactococcus lactis subsp. lactis KF147] Length = 419 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210 +I +A L+ + GD ++ N L+ L+ E+ +T +++ + Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 D H + + + + ++ A + L ++ Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273 >gi|188585197|ref|YP_001916742.1| glycogen/starch/alpha-glucan phosphorylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349884|gb|ACB84154.1| glycogen/starch/alpha-glucan phosphorylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 828 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 E + I+ + + ++ T++ I L E+L W + ++ L +I +H Sbjct: 326 ELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPEALESWPEETIKCLLPRIHMIVHE 383 >gi|15672079|ref|NP_266253.1| recombination factor protein RarA [Lactococcus lactis subsp. lactis Il1403] gi|12722942|gb|AAK04195.1|AE006248_3 chromosome segregation helicase [Lactococcus lactis subsp. lactis Il1403] Length = 419 Score = 38.0 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210 +I +A L+ + GD ++ N L+ L+ E+ +T +++ + Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 D H + + + + ++ A + L ++ Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273 >gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus sp. PCC 7335] Length = 745 Score = 38.0 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 17/191 (8%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 I A Q++ G + + L +LS + IT + V D++ + Sbjct: 193 AEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSL---QANKITVETVWDLVGAVPERDL 249 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 ++ A + + +L + ++ L + ++ Sbjct: 250 LNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPKRVDLVAITS 309 Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTIL 336 E I ++ + + + K+ + + L I +L Sbjct: 310 PTWAE-MIPFAQK---------LSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLL 359 Query: 337 --YIAQTACKN 345 + A + Sbjct: 360 PSALEVMAKRT 370 >gi|256426033|ref|YP_003126686.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis DSM 2588] Length = 634 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 102/306 (33%), Gaps = 45/306 (14%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 F++ L+A +I T ++ K KI +I+ + + + + + Sbjct: 90 FNIHELDAASNNSVDDIRTLVEQVRFAPQAGKYKIYIIDEVHMLSSSAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN-----KIHLMDLIEESLLIGQ 162 I I+ EK + I C + +D ++E Sbjct: 150 SYAIFIL------------ATTEKHKILPTILSRCQIFDFKRITIQDTVDHLQEICSKEH 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 +A ++ G S + L K+ S+ +T Q+ + + Y ++ Sbjct: 198 IQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGG--HLTYQNTLEHLNILDYDYFFRVM 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK------IHIIKECSN-ISF 275 + +Q + A+++ D L L+G+ + + L +H+++ N Sbjct: 256 DTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKVLHLVEVSGNLKDR 315 Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335 K + + L +L + N+ + + + K+ ++E +I Sbjct: 316 YKQMAGKVSP------SYLITALHLLNETEINYRMAR--------NKRLHVEMALIKLCF 361 Query: 336 LYIAQT 341 L A T Sbjct: 362 LQQAVT 367 >gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0082] Length = 581 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994] gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994] Length = 392 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 +++ L+ + +EA++ L+A+ GGD +R L+ L C + IT +K + Sbjct: 155 LDDLLVRTAIEMDEEAREYLIASSGGD---ARAMLKLLEVSCALNKPITLGLLKSLRPAA 211 Query: 214 HVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 L E I + AI + P + Sbjct: 212 QSLGSSEAGVHYDLASALIKSIRGSDPDAAIYYLARLIEGGEPPEFIARRL 262 >gi|308095342|ref|ZP_07663250.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus Peru-466] gi|308089339|gb|EFO39034.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus Peru-466] Length = 138 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 5/103 (4%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ +G++ LI E +K F A++ + + ++ + SLFS Sbjct: 19 VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75 Query: 83 KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 +++I +E + L+ + + +++I ++ K Sbjct: 76 RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTK 118 >gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501] Length = 581 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica] gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica] Length = 358 Score = 37.6 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILIT 202 + + I + + + I+ +AK LL GD + N LQ + + IT Sbjct: 195 EAAIDKRIMQVIDAEKVKIAPDAKAALLELSKGDMRRALNVLQ--ACHTGLEHPGKDTIT 252 Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 V + I+ I+ + + A Sbjct: 253 LSQVYLCVGSPDPADIDTILTSILNDDWTTA 283 >gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum ferrodiazotrophum] Length = 576 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 97/286 (33%), Gaps = 43/286 (15%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 ++ T + L S+ +I++I+ + + L + + + + + I+ + E K Sbjct: 103 DDVRTLRESLVYAPLTSRSRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHK 162 Query: 124 --NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 + L + +L +S + D I S++ ++ G Sbjct: 163 IPDTVLSRCQHFRFRLLTVS-------QISDRILHVCRSENISLNPTVTGMVARAAEGSL 215 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 + + L +L + +T V D++ T E+++ A + G + + A L Sbjct: 216 RDALSLLDQL-LRTGGES-LTPADVADLLGVTDHALEEKMLAAILLGDLSATLRTARTAL 273 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNI----------SFEKIIQKTEKNIIPMKR 291 + + A + ++F+ + +H + +++ S + + NI Sbjct: 274 DTGVDPRAQVRSLARRFR--DILHSTLDGTSLDSPIYGWIPESVQALPLDPPPNIFF--- 328 Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337 + + L + R+ I F+ +L Sbjct: 329 --------------LEQALSVLVKGEDDLRRSPQP--AITFELLLA 358 >gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. SMY] gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. subtilis str. 168] Length = 421 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 34/317 (10%) Query: 25 IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84 I YG + + SI + +++ +K++ E + + Sbjct: 42 ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93 Query: 85 IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 +IL E +K D L + II+I + + + T + + Sbjct: 94 LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150 Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195 K L + + L SI +A + GGD ++ N L+ Sbjct: 151 PELIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210 Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +I IT + ++ + D H + + A+ + + Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304 + + E I + + IQ E+ P R + + + Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327 Query: 305 LVRETLHKIDHRIHLAR 321 + ID + R Sbjct: 328 KSNSAILAIDEALADIR 344 >gi|158313938|ref|YP_001506446.1| DNA polymerase III, delta subunit [Frankia sp. EAN1pec] gi|158109343|gb|ABW11540.1| DNA polymerase III, delta subunit [Frankia sp. EAN1pec] Length = 333 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 89/273 (32%), Gaps = 29/273 (10%) Query: 74 INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132 + +TS+F +++++ + +++ D L + + + ++++ + + KN L + Sbjct: 61 LGATSMFGGGRVLVVRGAADLAEELRDALLAYVAHPLDDVVLVVVHSGVVKNRKLVDAMK 120 Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 K + + + D + + ++ EA + LL +GGD +L Sbjct: 121 KAGARVMPAAKITRPRDRHDFVIAEIRRLGGRMTDEAVRALLDAVGGDLREIAAVCDQLV 180 Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +I E V + +A + G + A+ L L + Sbjct: 181 --ADTAGVIDESAVARYHRGRAEASGFAVADAAVAGDLAGALTLLRQALEGGTAPVLVTS 238 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV------ 306 + L + + S + + ++R Q + R W+ + Sbjct: 239 AIAGGLRDLAR---VSAVGGGSKWDVAKALGMPDWKVERA--QRAARSWSDAGLARAIRA 293 Query: 307 ---------------RETLHKIDHRIHLARKKK 324 L ++ H + AR + Sbjct: 294 VAVADAGVKGAAVDAGYALERLLHEVTQARGRG 326 >gi|225024894|ref|ZP_03714086.1| hypothetical protein EIKCOROL_01782 [Eikenella corrodens ATCC 23834] gi|224942298|gb|EEG23507.1| hypothetical protein EIKCOROL_01782 [Eikenella corrodens ATCC 23834] Length = 312 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 2/75 (2%) Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI- 313 L +LE++ + ++ I+ + + ++ +++ R+ L Sbjct: 29 LGHRHILERLRHEADERGLAAVAIVFEPQPQEFFSRQRSVEKPFRLSPLREKLRLLRDTG 88 Query: 314 -DHRIHLARKKKYLE 327 + + R L Sbjct: 89 CLDAVWVLRFNAGLA 103 >gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC BAA-381] gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381] Length = 392 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 13/120 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L +L E+ +I KEAK L+++ GGD A N L + L D I+ + Sbjct: 147 TNADLCELFEKVQKSLNFTIDKEAKNYLISSSGGDARAMFNLLD-FAL--LIDENISLKT 203 Query: 206 VKDIICD--THVLYIEE--------IINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 +K + + ++ I + I AI L + + + Sbjct: 204 LKTLRANSIAEGANSDDTHYQIISAFIKSIRGSDIDAAIYYLARMLENGESPDFIARRLM 263 >gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2] gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2] Length = 421 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 26/184 (14%) Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII--- 210 L ++ EA L GGD ++ N L+ E+ IT + ++ + Sbjct: 169 LGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKK 228 Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 D H I + + A+ + + L ++ L Sbjct: 229 GFVHDKDGDAHYDVISAFQKSIRGSDVNAALHYMARLIEAGD-----LESLARRL--LVI 281 Query: 264 IHIIKECSNISFE----KIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIH 318 + ++ + IQ E+ P R + + + + +D + Sbjct: 282 AYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALS 341 Query: 319 LARK 322 R Sbjct: 342 DVRS 345 >gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 515 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 74/183 (40%), Gaps = 18/183 (9%) Query: 53 FSLVVLNALEIQKNI---STFWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104 F ++ LNA + + + S+S+F KK +I+++ + + + L ++ Sbjct: 65 FEVIELNASDKRSASVIKKVVGHAATSSSIFGKKFLIILDEVDGISGKEDAGGVSELIKV 124 Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 I K + II+ +N+ +R + V I P + + ++++ Sbjct: 125 IKK--AKNPIILTAND-AYAPAIRNLL---PYVEVIQLNPVHTNSVYKVLKKIAQKEGLD 178 Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 + + +++ + GD ++ N+L+ L+ ++ + + + I + + Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAAQKLPDRKREANIFDALRV 234 Query: 225 TIQ 227 ++ Sbjct: 235 ILK 237 >gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|258615716|ref|ZP_05713486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecium DO] gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933] gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502] gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410] gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408] gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68] gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6] gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF] gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071] gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636] gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679] gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317] gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162] gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a01] gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133B] gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133A] gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133C] gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium TX0133a04] Length = 581 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. RCC307] gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Synechococcus sp. RCC307] Length = 719 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 23/132 (17%) Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---- 194 ++ L +++ +L + EA+ L+ GGD + N L+ L+ Sbjct: 172 DQAALHQVLDRALSDRTHGYGERSIQLDAEARAHLVEVAGGDARSLLNALE-LAVETTDA 230 Query: 195 -CLEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243 I IT ++ I D H I I + A+ + + Sbjct: 231 NASGAIQITLAVAEESIQQQAVLYDKQGDAHFDTISAFIKSIRGSDPDAALFWLARMVEA 290 Query: 244 KMPSHALLHGFL 255 + L Sbjct: 291 GEDPRFIFRRLL 302 >gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium cellulolyticum H10] gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium cellulolyticum H10] Length = 562 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 2/115 (1%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 +I + ++ G + + L + IT Q+V D I +I Sbjct: 192 QASGINIDDDGALLIARLADGALRDALSILDQCI--AEGSTTITYQNVLDAIGIVSDDFI 249 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 EI++ + + + A + F+ L + K NI Sbjct: 250 SEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKNPENI 304 >gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC 14580] gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580] Length = 421 Score = 37.6 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 26/184 (14%) Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII--- 210 L ++ EA L GGD ++ N L+ E+ IT + ++ + Sbjct: 169 LGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKK 228 Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 D H I + + A+ + + L ++ L Sbjct: 229 SFVHDKDGDAHYDVISAFQKSIRGSDVNAALHYMARLIEAGD-----LESLARRL--LVI 281 Query: 264 IHIIKECSNISFE----KIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIH 318 + ++ + IQ E+ P R + + + + +D + Sbjct: 282 AYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALS 341 Query: 319 LARK 322 R Sbjct: 342 DVRS 345 >gi|312962441|ref|ZP_07776932.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] gi|311283368|gb|EFQ61958.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens WH6] Length = 684 Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270 + ++++A I+G + + +L L + + E Sbjct: 245 DHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 --SNISFEKIIQKTEK 284 + + + Sbjct: 305 GHGDRDRVLALAQALP 320 >gi|260205716|ref|ZP_05773207.1| hypothetical protein MtubK8_15594 [Mycobacterium tuberculosis K85] Length = 322 Score = 37.6 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 55 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282 Query: 308 ETLHKIDH 315 + + Sbjct: 283 TAMRLVAE 290 >gi|229591983|ref|YP_002874102.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens SBW25] gi|229363849|emb|CAY51308.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens SBW25] Length = 688 Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 10/133 (7%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 187 LSHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII---KEC 270 + ++++A I+G + + +L L + + + Sbjct: 245 DHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304 Query: 271 SNISFEKIIQKTE 283 + ++++ + Sbjct: 305 GHGDRDRVLALAQ 317 >gi|19112071|ref|NP_595279.1| coatomer alpha subunit (predicted) [Schizosaccharomyces pombe 972h-] gi|74698003|sp|Q96WV5|COPA_SCHPO RecName: Full=Putative coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP gi|14018381|emb|CAC38349.1| coatomer alpha subunit (predicted) [Schizosaccharomyces pombe] Length = 1207 Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 E+ V D++ D + I + A +A S M G + F L+ Sbjct: 887 EEAVNDVVDDASAFVGADEIFLWKRNSPLAADHIAAGDFESAMKILNKQVGAI-NFSPLK 945 Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL-----HKIDHRI 317 + ++ + I + + ++RN + + R + L H++ Sbjct: 946 TRFLEIYTASRVYLPTISGLDPLVSYVRRNA-ETAERSQALPFITRNLASIKSHELHEAY 1004 Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKN 345 L + K LE I F++I+Y+A T N Sbjct: 1005 RLVKANKILEAQICFRSIIYLALTTVAN 1032 >gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20] Length = 391 Score = 37.6 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L ++L + +K I AK LL N GD A L L + IT + Sbjct: 150 NKSDLDKLCTKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLET 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 ++ + D + + +++G +I +A + Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265 >gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803] Length = 562 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ + + + EA QI+ G + + + + SY D +T + V Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLVDQAISYS--DETVTTEDVLA 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + Y+ ++ + + A+ + D + + F+ ++ Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290 >gi|188584657|ref|YP_001916202.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius thermophilus JW/NM-WN-LF] Length = 589 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + L ++I+ S +KE+ I+ G + + L + S+ + HV Sbjct: 184 EKQLQNVIDSK----NLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHV 239 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266 ++ +++ A +G + + + S L+ + + L + Sbjct: 240 LEVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKL 299 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNIL--------QESLRIWNKNL---VRETLHKI 313 + + + + + K ++ ++ W++N V ++I Sbjct: 300 KGPSDQLLWGSVDSVKKLHKYFTKDELISMIDFLSEKQQAMKWSQNRRLIVEMAFYRI 357 >gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi ATCC 49188] Length = 605 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 20/203 (9%), Positives = 65/203 (32%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + Q ++ + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEQIAVDDTSLAMIARAGEGSARDSLSIFDQAI--AHGAGTVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E ++ ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQKLSVRVLSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A ++ Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRS 384 >gi|113474658|ref|YP_720719.1| DNA polymerase III s gamma and tau [Trichodesmium erythraeum IMS101] gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium erythraeum IMS101] Length = 695 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 23/169 (13%) Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIE--------------------ESLLIGQKSIS 166 L+ + E V+ I D + L +I + + I+ Sbjct: 142 LKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAMVKHLHHIAIEEKIDIT 201 Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226 EA Q++ G + + L +LS IT + V D++ + ++ A Sbjct: 202 TEAIQMIAQIAQGGLRDAESLLDQLSLLAG---EITVERVWDLVGAVPERDLMVLVEAIA 258 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275 + + +L ++ L N+ Sbjct: 259 ADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTAPTSKNLVA 307 >gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 21/131 (16%) Query: 146 NKIHLMDLIEESLLIGQKS-------ISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196 K + LI +L ++ I ++A + L GGD + N ++ Sbjct: 169 EKEDIRKLIMRALTDEERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVLTTERS 228 Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 I IT V + I D H I I + A+ L + Sbjct: 229 EDGKIHITIDVVSECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVFYLAKMLYAG 288 Query: 245 MPSHALLHGFL 255 + + Sbjct: 289 EDVKFIARRIM 299 >gi|289575106|ref|ZP_06455333.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539537|gb|EFD44115.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 316 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 49 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276 Query: 308 ETLHKIDH 315 + + Sbjct: 277 TAMRLVAE 284 >gi|332217084|ref|XP_003257685.1| PREDICTED: regulator of nonsense transcripts 2-like [Nomascus leucogenys] Length = 1272 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L ++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKS 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|302341641|ref|YP_003806170.1| glycosyl transferase family 2 [Desulfarculus baarsii DSM 2075] gi|301638254|gb|ADK83576.1| glycosyl transferase family 2 [Desulfarculus baarsii DSM 2075] Length = 417 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%) Query: 54 SLVVLNALEIQKNISTFWNE--------INSTSL---FSKKK-IILIENLSTEKKVLDCL 101 + + + +I I F NE + + L F K+ +ILI + + + Sbjct: 14 RIEEIGSADILMGIPCFNNEQTIVHVIQMLTHGLAKHFGDKRSVILIADGGSTDDTREMA 73 Query: 102 EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142 + IK I+ I K + LR I E + +C Sbjct: 74 RDFEIKPWQEKIVSIYRGPGGKGSALRSIFEAAARLKVKAC 114 >gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp. NAS-14.1] Length = 582 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + T Sbjct: 188 EPEVMIALMRKIATAEGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ + A+L Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDL 294 >gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum DSM 5427] gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum DSM 5427] Length = 537 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 1/115 (0%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + + + + + I ++A + G + + L++ S+ + IT V Sbjct: 180 AKEIEETLISYMQTEKIDIEEKALAYIARLADGGMRDALSILEQSISFYFGE-TITLDKV 238 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 ++ + E+I+A + L + + L+ + L Sbjct: 239 LYLVGAVDSNILFEMIDAIAGKDATKVLELCEEVNRQGRSMRQFVSDLLEHSRNL 293 >gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414] gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414] Length = 650 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 3/120 (2%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + +I+ +A ++ G + + L +L+ +T V D++ Sbjct: 189 LSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVG---EVTPDKVWDLVGSV 245 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273 + ++NA Q + + + L S +L ++ L ++ Sbjct: 246 SEQDLIALLNAIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDLLIAQTASNRQDL 305 >gi|15841931|ref|NP_336968.1| hypothetical protein MT2486 [Mycobacterium tuberculosis CDC1551] gi|148823616|ref|YP_001288370.1| hypothetical protein TBFG_12441 [Mycobacterium tuberculosis F11] gi|167969730|ref|ZP_02552007.1| hypothetical protein MtubH3_17575 [Mycobacterium tuberculosis H37Ra] gi|215412165|ref|ZP_03420929.1| hypothetical protein Mtub9_12562 [Mycobacterium tuberculosis 94_M4241A] gi|215427795|ref|ZP_03425714.1| hypothetical protein MtubT9_15977 [Mycobacterium tuberculosis T92] gi|215446657|ref|ZP_03433409.1| hypothetical protein MtubT_12204 [Mycobacterium tuberculosis T85] gi|218754142|ref|ZP_03532938.1| hypothetical protein MtubG1_12239 [Mycobacterium tuberculosis GM 1503] gi|219558408|ref|ZP_03537484.1| hypothetical protein MtubT1_14332 [Mycobacterium tuberculosis T17] gi|253798509|ref|YP_003031510.1| hypothetical protein TBMG_01561 [Mycobacterium tuberculosis KZN 1435] gi|254232551|ref|ZP_04925878.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365188|ref|ZP_04981234.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551460|ref|ZP_05141907.1| hypothetical protein Mtube_13539 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187419|ref|ZP_05764893.1| hypothetical protein MtubCP_15501 [Mycobacterium tuberculosis CPHL_A] gi|289553797|ref|ZP_06443007.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289758541|ref|ZP_06517919.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|294994479|ref|ZP_06800170.1| hypothetical protein Mtub2_08183 [Mycobacterium tuberculosis 210] gi|297732009|ref|ZP_06961127.1| hypothetical protein MtubKR_13014 [Mycobacterium tuberculosis KZN R506] gi|298525895|ref|ZP_07013304.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776680|ref|ZP_07415017.1| hypothetical protein TMAG_02972 [Mycobacterium tuberculosis SUMu001] gi|306780454|ref|ZP_07418791.1| hypothetical protein TMBG_00956 [Mycobacterium tuberculosis SUMu002] gi|306785204|ref|ZP_07423526.1| hypothetical protein TMCG_00512 [Mycobacterium tuberculosis SUMu003] gi|306789565|ref|ZP_07427887.1| hypothetical protein TMDG_00891 [Mycobacterium tuberculosis SUMu004] gi|306793890|ref|ZP_07432192.1| hypothetical protein TMEG_02779 [Mycobacterium tuberculosis SUMu005] gi|306798287|ref|ZP_07436589.1| hypothetical protein TMFG_01377 [Mycobacterium tuberculosis SUMu006] gi|306804162|ref|ZP_07440830.1| hypothetical protein TMHG_01607 [Mycobacterium tuberculosis SUMu008] gi|306808733|ref|ZP_07445401.1| hypothetical protein TMGG_00975 [Mycobacterium tuberculosis SUMu007] gi|306972792|ref|ZP_07485453.1| hypothetical protein TMJG_00681 [Mycobacterium tuberculosis SUMu010] gi|307080497|ref|ZP_07489667.1| hypothetical protein TMKG_00675 [Mycobacterium tuberculosis SUMu011] gi|307085095|ref|ZP_07494208.1| hypothetical protein TMLG_02165 [Mycobacterium tuberculosis SUMu012] gi|313659344|ref|ZP_07816224.1| hypothetical protein MtubKV_13029 [Mycobacterium tuberculosis KZN V2475] gi|13882202|gb|AAK46782.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601610|gb|EAY60620.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134150702|gb|EBA42747.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148722143|gb|ABR06768.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320012|gb|ACT24615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289438429|gb|EFD20922.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289714105|gb|EFD78117.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298495689|gb|EFI30983.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214929|gb|EFO74328.1| hypothetical protein TMAG_02972 [Mycobacterium tuberculosis SUMu001] gi|308326690|gb|EFP15541.1| hypothetical protein TMBG_00956 [Mycobacterium tuberculosis SUMu002] gi|308330118|gb|EFP18969.1| hypothetical protein TMCG_00512 [Mycobacterium tuberculosis SUMu003] gi|308333958|gb|EFP22809.1| hypothetical protein TMDG_00891 [Mycobacterium tuberculosis SUMu004] gi|308337770|gb|EFP26621.1| hypothetical protein TMEG_02779 [Mycobacterium tuberculosis SUMu005] gi|308341432|gb|EFP30283.1| hypothetical protein TMFG_01377 [Mycobacterium tuberculosis SUMu006] gi|308344928|gb|EFP33779.1| hypothetical protein TMGG_00975 [Mycobacterium tuberculosis SUMu007] gi|308349239|gb|EFP38090.1| hypothetical protein TMHG_01607 [Mycobacterium tuberculosis SUMu008] gi|308357804|gb|EFP46655.1| hypothetical protein TMJG_00681 [Mycobacterium tuberculosis SUMu010] gi|308361749|gb|EFP50600.1| hypothetical protein TMKG_00675 [Mycobacterium tuberculosis SUMu011] gi|308365359|gb|EFP54210.1| hypothetical protein TMLG_02165 [Mycobacterium tuberculosis SUMu012] gi|323719010|gb|EGB28159.1| hypothetical protein TMMG_01705 [Mycobacterium tuberculosis CDC1551A] gi|328458277|gb|AEB03700.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 37.6 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 55 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282 Query: 308 ETLHKIDH 315 + + Sbjct: 283 TAMRLVAE 290 >gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733] gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12] gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980] gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium PC4.1] Length = 581 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L + A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit Length = 440 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 79/199 (39%), Gaps = 24/199 (12%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSL 79 + + YG L ++ + F + ++ + +I T + + ++ Sbjct: 41 YKAVLLYGPPGVGKTTLAEALARDYKLEL---FEMNASDSRNLN-DIRTMAERASITGTI 96 Query: 80 FSKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--A 131 F K K+IL++ N + +D + E+I N + II+ +N+ + +LR + A Sbjct: 97 FGIKGKLILLDEVDGLNARADAGAIDAILELI--NKTKYPIILTAND-PWDPSLRPLRNA 153 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K + ++ YP L ++++ + + EA ++ GD +R + L Sbjct: 154 VKMIELKRLTKYP-----LKRILKKICEAEKITCEDEALDFIIEQSEGD---ARYAINML 205 Query: 192 SSYCLEDILITEQHVKDII 210 +T K+++ Sbjct: 206 QGVAEGYGRVTLDMAKNLV 224 >gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium hafniense DCB-2] gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium hafniense DCB-2] Length = 554 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 61/177 (34%), Gaps = 15/177 (8%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 + +++ + + EA QI+ G + + L + D + + V + Sbjct: 183 IHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL---DGKLGVEQVYQV 239 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + + ++++ + G A+ + M ++ L + + Sbjct: 240 LGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQ-----ALLY 294 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIW------NKNLVRETLH-KIDHRIHL 319 S +F ++ +++ + + ++L W ++ ++ + ++ + L Sbjct: 295 ASTQAFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLL 351 >gi|294813917|ref|ZP_06772560.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] gi|294326516|gb|EFG08159.1| DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 481 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%) Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T ++ T ++ +++A G A + D + + L++ Sbjct: 272 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 331 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314 + L + + EK +I ++++ + + ++ Sbjct: 332 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 380 Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349 + R L+ + I + +L A ++ Sbjct: 381 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 418 >gi|15609550|ref|NP_216929.1| hypothetical protein Rv2413c [Mycobacterium tuberculosis H37Rv] gi|31793592|ref|NP_856085.1| hypothetical protein Mb2436c [Mycobacterium bovis AF2122/97] gi|121638294|ref|YP_978518.1| hypothetical protein BCG_2429c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662247|ref|YP_001283770.1| hypothetical protein MRA_2438 [Mycobacterium tuberculosis H37Ra] gi|224990788|ref|YP_002645475.1| hypothetical protein JTY_2423 [Mycobacterium bovis BCG str. Tokyo 172] gi|289448055|ref|ZP_06437799.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289570561|ref|ZP_06450788.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289751018|ref|ZP_06510396.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289762580|ref|ZP_06521958.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297635017|ref|ZP_06952797.1| hypothetical protein MtubK4_12889 [Mycobacterium tuberculosis KZN 4207] gi|1655646|emb|CAB03745.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31619185|emb|CAD97297.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493942|emb|CAL72417.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506399|gb|ABQ74208.1| hypothetical protein MRA_2438 [Mycobacterium tuberculosis H37Ra] gi|224773901|dbj|BAH26707.1| hypothetical protein JTY_2423 [Mycobacterium bovis BCG str. Tokyo 172] gi|289421013|gb|EFD18214.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289544315|gb|EFD47963.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289691605|gb|EFD59034.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289710086|gb|EFD74102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|326904030|gb|EGE50963.1| hypothetical protein TBPG_01919 [Mycobacterium tuberculosis W-148] Length = 316 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127 E+ S SLF++++I+++ + K + E ++++ S + + L Sbjct: 49 ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108 Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187 R + + I D I + + E LL +G D + Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164 Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 +L + V+ + +I + + G + A + + P Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222 Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 L + + + + ++ + P + Q+ R W+++ V Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276 Query: 308 ETLHKIDH 315 + + Sbjct: 277 TAMRLVAE 284 >gi|309806845|ref|ZP_07700833.1| putative DNA polymerase III, delta subunit [Lactobacillus iners LactinV 03V1-b] gi|308166760|gb|EFO68951.1| putative DNA polymerase III, delta subunit [Lactobacillus iners LactinV 03V1-b] Length = 294 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 99/242 (40%), Gaps = 17/242 (7%) Query: 53 FSLVVLNALE-IQKNISTFWNEINSTSLFSKKKIILIENLS--------TEKKVLDCLEE 103 FS L ++ ++ I ++ +SLFS +++I+++N + K L+ L++ Sbjct: 7 FSNYDLTYVDVLESGIDGLIATMSESSLFSLQRLIIVKNPIFLSTKFVVKDSKQLEKLKQ 66 Query: 104 IIIK-NICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 +I +I + +I+ +N +I K + K+ K +V+ + + +++ Sbjct: 67 LIDNLSILDDLIVFVANYEKIDKRKAIVKLLIKNVNVVETNF---KAQEVAKVLKSIAAA 123 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + +A L+ + N KL + +E I + VK I + + E Sbjct: 124 EKIKFIGDAFTELIKRSDNVFSLALNNYLKLKN-IVEGKEILPEVVKSNIDQSLSENVFE 182 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 I+ A A D + + + ALL F + + L + I+ + ++I+ Sbjct: 183 IMTAIFNKNYVEANRRLDEQINNGLTPIALLAIFESQLEFLLCVKIL-QKRGWVKDQIVD 241 Query: 281 KT 282 + Sbjct: 242 EL 243 >gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] Length = 391 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 15/118 (12%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-DILITEQHV 206 L L++++L G+ + ++A++ L+A+ GGD A KL + IT + Sbjct: 152 ASLEKLLQKALQRGEIMLERDAQEYLIASSGGDARAML----KLLEFASNIQSKITLDTL 207 Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 K + + E I + AI + + + Sbjct: 208 KSLRPNALQAGSSEAGVHYDLASALIKSIRGSDADAAIYYLARLIDGGESADFIARRL 265 >gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis HTCC2601] gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. HTCC2601] Length = 588 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ Q I+ +A ++ G + + L + T + Sbjct: 189 EPEVMISLLRRIATAEQAEITDDALALVTRAAEGSARDATSLLDQAI--SHGAGETTAEQ 246 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + G A+ A A+L Sbjct: 247 VRAMLGLADRGRVMDLFEKIMYGDAPGALTELSQQYADGADPLAVLRDL 295 >gi|223934153|ref|ZP_03626095.1| AAA ATPase central domain protein [Streptococcus suis 89/1591] gi|330833714|ref|YP_004402539.1| AAA ATPase central domain-containing protein [Streptococcus suis ST3] gi|223897175|gb|EEF63594.1| AAA ATPase central domain protein [Streptococcus suis 89/1591] gi|329307937|gb|AEB82353.1| AAA ATPase central domain protein [Streptococcus suis ST3] Length = 428 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210 +I EA L GD A+ N L+ I V++ + Sbjct: 174 VTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMD 233 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 D H + + + + ++ A + ++ + ++ + + Sbjct: 234 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 293 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327 + ++ + QK P R ++ + +D + RK +L Sbjct: 294 QIHTVTALEAAQKIG---FPEARILIANVVIDLALSPKSNSAYLAMDAALADLRKNGHLP 350 Query: 328 KN 329 Sbjct: 351 IP 352 >gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM 15606] Length = 599 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 74/224 (33%), Gaps = 28/224 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151 + + + + + I I+ EK + I Y ++ + Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183 Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + IE + EA ++ G + + + +S+C IT Q V + Sbjct: 184 NTIEHLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + Y +I++ + K+ ++L + L+ L+ G + + Sbjct: 242 DLNVLDSDYYFKIVDFALSNKVSEIMVLVNNILSKGFDGGNLISGLACHVRNVLMAR--- 298 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNI----LQESLRIWNKNLVRE 308 + + + + ++ K + L ++L++ N+ + Sbjct: 299 DETTLPLLETSEQQRKKYHEQAKKCPVQYLYQALKLLNQCDINY 342 >gi|172055031|ref|YP_001806358.1| putative DNA polymerase III, subunit delta [Cyanothece sp. ATCC 51142] gi|171701312|gb|ACB54292.1| putative DNA polymerase III, delta subunit [Cyanothece sp. ATCC 51142] Length = 306 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 33/267 (12%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 +++ G D E I K ++ F++V L + S LFS Sbjct: 7 LYVIAGDDTFRKSEKIAAIIK---EGDYERFNVVSLEDA---------IRDALSPGLFS- 53 Query: 83 KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---SVLA 139 KK ++ E K LE ++ + +I+ + L K K + A Sbjct: 54 KKAMVFEGKEIPYKDSKPLEPVVNS---ENAVILDITSVDGRTKLGKWLNKQKCVERINA 110 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE----AKQILLANLGGDRIASRNELQKLSSYC 195 ++ + ++K I+ L + + + AKQ LL +G D + EL+ + +Y Sbjct: 111 LNQFQEDK------IKAELAMRSLKLGLDLSIHAKQYLLEAVGPDIGRMQRELELIKAY- 163 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 D + + ++ D + + + + + +L + Sbjct: 164 FGDGQVLATELPTLVPDYAQTSYQ--LATALTEFPKTVYERTQSLIDLGIHPLQILATLI 221 Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282 + + L I E S ++ E+I ++ Sbjct: 222 NRIEKLMLTAIGIE-SGLAREQIAEEL 247 >gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101] Length = 578 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+ +A ++ G + + L + T Sbjct: 188 EPEVMITLMRKIASAEGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ + A+L Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALNELSSQYSDGADPMAVLRDL 294 >gi|329767046|ref|ZP_08258574.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] gi|328837771|gb|EGF87396.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341] Length = 571 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 33/262 (12%) Query: 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68 ++ + +SH ++FYGS + F + ++ + ++ +EI + Sbjct: 26 VLKNAIDKDQISH-AYLFYGSRGTGKTSIAKIFAN--EVNKNEEYQKENVDIIEIDAASN 82 Query: 69 TFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE 120 +E+ K K+ +I+ + + L + + + + I I+ Sbjct: 83 NGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL---- 138 Query: 121 IKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL--MDLIEE---SLLIGQKSISKEAKQIL 173 E I C +L LI+ I A + + Sbjct: 139 --------ATTEIHKIPATILSRCQRFEFKNLSQEQLIDRLKYISEKESLVIEDAAIEKI 190 Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233 G + + L ++S+Y IT H+ ++ I +QG + + Sbjct: 191 ATLAKGGLRDAISILDQVSNYS---EEITLNHILEVTSSISEDDILVFYRNLLQGDVTKS 247 Query: 234 IMLADFFLASKMPSHALLHGFL 255 ++ + F++ + LL+ + Sbjct: 248 LLTYNNFVSQAKDTKLLLNDLI 269 >gi|326329503|ref|ZP_08195827.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] gi|325952829|gb|EGD44845.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae bacterium Broad-1] Length = 667 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 60/190 (31%), Gaps = 12/190 (6%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 + D I ++ A ++ G S + + +L + +T + + Sbjct: 292 VSDYIATLCEKEGINVEPAALPLVARAGAGSMRDSLSVMDQLLGGAGPEG-VTYELAAGL 350 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++E+++A + D + + L++ + L + + + Sbjct: 351 LGYTPDALLDEVVDAFAAHDGAAVFGVIDKIIETGQDPRRFTEDLLRRLRDLVIVKAVPD 410 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYL 326 + + + ++ ++ R + + + + R + L Sbjct: 411 APATGLIDVSEDGGE-------RLVAQAGRF-GPHDLSRAADAVATGLTEMRGATAPRLL 462 Query: 327 EKNIIFQTIL 336 + I + +L Sbjct: 463 LELICARVLL 472 >gi|330945331|gb|EGH46948.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. pisi str. 1704B] Length = 327 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 10/117 (8%), Positives = 33/117 (28%), Gaps = 2/117 (1%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + L + +A +L G + + + + + V+ ++ Sbjct: 60 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 117 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + +++ A ++G + + +L L + + E Sbjct: 118 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEG 174 >gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2] gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2] Length = 451 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 25/135 (18%) Query: 147 KIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + ++ ++E + L S EA + A GD A+ L+ + Y Sbjct: 172 ERDIVTILERAATDPVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARK 231 Query: 200 --------LITEQHVKDIIC------DTHVLYIEEIINA---TIQG-KIYNAIMLADFFL 241 IT + V + D +I+A +++G AI + + Sbjct: 232 GAGGKTPSAITPEDVAAAVEKKALRYDKSGEEHFNLISAFHKSLRGSDPDGAIYWLERMM 291 Query: 242 ASKMPSHALLHGFLQ 256 A+ L+ ++ Sbjct: 292 AAGEDPLYLIRRMVR 306 >gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus caseolyticus JCSC5402] Length = 546 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 46/184 (25%), Gaps = 22/184 (11%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN-----KI 148 + L + + + + + I+ E I C + Sbjct: 134 GAFNALLKTLEEPPAHAVFIL------------ATTEPHKVPATIISRCQRFDFKAISVN 181 Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + + + + A + G + + L + +T +HV Sbjct: 182 DIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSILDQAI--AFGTETLTLEHVHS 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + E+ + I + A L+ + L++ + F + Sbjct: 240 VTGSVGREDFFELTDYIITHDVKEAFKQFHRLLSEGKETTRLVNDLI-YFLRDIIMDYAA 298 Query: 269 ECSN 272 + Sbjct: 299 DNKG 302 >gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999] Length = 440 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 19/129 (14%) Query: 146 NKIHLMDLIEESLLIGQ------KSISKEAKQILLANLGGD--RIASRNEL-QKLSSYCL 196 ++ + +++L + SI +A L + GD R EL +LS Sbjct: 155 TDADIIQICQQALANDEWLCACAVSIDDDALMTLASLSSGDARRALLYLELAAQLSQSAD 214 Query: 197 EDILITEQHVKDIIC------DTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMP 246 +T+QHV D + ++++A A+ +L + Sbjct: 215 GSHRVTQQHVAQAAGQKVAQFDQQGDHYYDVLSAFHKSVRGSSSDGALYWFARYLTANSD 274 Query: 247 SHALLHGFL 255 ++ L Sbjct: 275 PVPIMRRLL 283 >gi|118444607|ref|YP_878358.1| recombination factor protein RarA [Clostridium novyi NT] gi|118135063|gb|ABK62107.1| ATPase, AAA family [Clostridium novyi NT] Length = 419 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL----ITEQHVKDII---- 210 + I K+A I+ GGD AS N L+ + IT+ +K+ + Sbjct: 189 GKLKVKIHKDAINIIAKLSGGDGRASLNTLELAILSTSRNNDGFIYITKDIIKECVQKPM 248 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 D H I + A+ + ++ + + Sbjct: 249 VNYDATGDNHYDITSAFIKSIRGSNPDAALYWFGRMILGGEDPRFIVRRLIVHASEDIGM 308 Query: 265 HIIKECSNISFEKIIQKTEKNI-IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHLARK 322 K+ + ++ + + +P R + +++ L +D I AR Sbjct: 309 ---KDPNAMNIAHAAWNALETVGMPEARIPIAQAIIYLSTAPKSNAVLVAVDKAIEDARV 365 Query: 323 KK 324 + Sbjct: 366 NQ 367 >gi|110668631|ref|YP_658442.1| replication factor C large subunit [Haloquadratum walsbyi DSM 16790] gi|121687203|sp|Q18GQ9|RFCL_HALWD RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|109626378|emb|CAJ52837.1| replication factor C large subunit [Haloquadratum walsbyi DSM 16790] Length = 516 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 60/195 (30%), Gaps = 28/195 (14%) Query: 54 SLVVLNALE--IQKNISTFWNEINSTSLFSK--------KKIILIENLST-----EKKVL 98 V LNA + I + + +++I+++ ++ Sbjct: 64 ETVELNASDQRTSDVIERLAGRAAKNATLAGAVSGTTSTRQLIIMDEADNIHYQYDRGGK 123 Query: 99 DCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157 + ++ ++I + ++ + LR A+ I + ++ ++ Sbjct: 124 QAVTTLLKDANQPIVLIANEYYDMSRG--LRNAAQD------IEFRDISARSIVPVLRNI 175 Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217 L + A + + GD R ++ L + IT VK + Sbjct: 176 LRKENIEFEEAALKQIAEVNSGD---LRAAIKDLQTTVEGSDRITVDDVKTG-GRDRAMG 231 Query: 218 IEEIINATIQGKIYN 232 + +++ ++ Sbjct: 232 LFSFLDSVLKEDAAE 246 >gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO] gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO] Length = 400 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 N +++ +E L S A ++ + G + + L + S+ + IT Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 + ++ ++A ++ ++ A+ + LA+ S L LQ + L Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296 >gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] gi|326948924|gb|AEA22621.1| DNA polymerase III, subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] Length = 829 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L L+E +++ +++ GG + + L +L + E+ +T + Sbjct: 192 GTLRALLERICAEEGVTVAPAVYPLVIRAGGGSARDTLSVLDQLLAGAGEEG-VTYERAV 250 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ T V ++++++ G D + + +Q+ + L + + Sbjct: 251 ALLGVTDVALVDDVVDGLAAGDSAAVYEAVDRLVEAGHDPRRFAADLMQRLRDLMLLQAV 310 Query: 268 KECSNI 273 + + Sbjct: 311 PDAAGQ 316 >gi|90419122|ref|ZP_01227033.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337202|gb|EAS50907.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1] Length = 411 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 23/188 (12%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH---- 214 +++ + A GG R+ R EL+ L ED L + Sbjct: 188 AENAANLAPGFLAAMEARYGGSRLG-RQELEGLMLEAREDALFDVAAIDAARVRVAPELR 246 Query: 215 --VLYIEEIINATIQGK---IYNAIMLAD-------FFLASKMPSHALLHGFLQKFQLLE 262 V+ ++ AT + I A AD H + F+ LE Sbjct: 247 RVVVAVDPPATATTRSDACGIIAAGHAADGTIYVLADASRRGAKPHQWAGAAVALFERLE 306 Query: 263 KIHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 I+ E E +I+ ++ ++ S W + L++ R+ A Sbjct: 307 ADRIVAEVNQGGDMVEAVIRACAPSVPFR---AVRASRGKWLRAEPVAALYE-QGRVRHA 362 Query: 321 RKKKYLEK 328 + LE Sbjct: 363 GRFPELED 370 >gi|298675294|ref|YP_003727044.1| AAA ATPase central domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288282|gb|ADI74248.1| AAA ATPase central domain protein [Methanohalobium evestigatum Z-7303] Length = 499 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 85/230 (36%), Gaps = 35/230 (15%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPF--SLVVLNALE--IQKNISTFWNEIN-S 76 I +G K + + + F ++ LNA + + I+ + + Sbjct: 44 RAVILHG--------RAGIGKTSTAYALANDFGWEVIELNASDQRTAEVINKIAGSASKT 95 Query: 77 TSLFS--KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLR 128 SLF K++I+++ + + ++ + E I K + +++ +N++ +++R Sbjct: 96 GSLFGSGGKRLIVLDEADNLHGTNDRGGARAISETIKK--TDQPVVLIANDVYGVASSIR 153 Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188 L I + +++ + E+ + L + GD ++ N+L Sbjct: 154 N------QCLEIKFNNVQTRSIAASLKKICKKEDINCDDESIEKLAQDSDGDVRSAINDL 207 Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLA 237 Q + + + + DT I +++ +G I +A+ Sbjct: 208 QA----AVSGNELHIEDIATSQRDTEE-SIFKVLTKIFKGHDINDALNAT 252 >gi|46579605|ref|YP_010413.1| hypothetical protein DVU1194 [Desulfovibrio vulgaris str. Hildenborough] gi|46449020|gb|AAS95672.1| hypothetical protein DVU_1194 [Desulfovibrio vulgaris str. Hildenborough] Length = 368 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120 + FW + LF + +++ N V L + + ++ Sbjct: 83 EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 141 Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162 E+ + + C + + ++ + +++ Sbjct: 142 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 191 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + A + A + D A+ EL KL D + + + ++ L I I Sbjct: 192 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGLDATLGPE-LAKLVSHEPDLDIFAFI 250 Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264 A G + L++ + L ++ Sbjct: 251 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 293 >gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4] Length = 610 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 63/172 (36%), Gaps = 7/172 (4%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204 ++ L+ L+ + IS EA +L+A G ++R+ L L + Sbjct: 202 DQAKLVGLLRRISDAEEIQISDEAL-LLIARAGE--GSARDSLSLLDQAMARASGPMEAD 258 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 ++ ++ + ++ + G++ A+ +L L+ ++ Sbjct: 259 DLRQMLGLADRARVIDLFEHVMAGRVAEAMDELQAQYEVGADPAIVLTDLADFTHLVTRV 318 Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316 + + ++ + +++T ++ ++ R W ++ + + ++ Sbjct: 319 KVAPKAADEASVTEVERTR-GREFAEKLSIRILSRAW--QILLKGVQEVQAA 367 >gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18] gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18] Length = 434 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 26/193 (13%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 E L + + + EA + GGD + N L+ + + IT + ++ Sbjct: 181 ERGLGESELTAAPEALAFMAEQAGGDARVALNTLETAARLARD-REITLETAREASQKKP 239 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 + H I I + A+ + + +L + I Sbjct: 240 LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMIEAGEDPIFILRRMV--------I 291 Query: 265 HIIKECSN------ISFEKIIQKTEKNIIPMKRNILQESLRIW-NKNLVRETLHKIDHRI 317 ++ N ++ +P R IL +++ + I+ + Sbjct: 292 FASEDVGNADPRGLQMAVSALEAFRLVGMPEGRIILGQAVTYLATAPKSNASYAGINAAL 351 Query: 318 HLARKKKYLEKNI 330 R L + Sbjct: 352 AEVRNSGGLAVPM 364 >gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7] gi|15621472|dbj|BAB65467.1| 413aa long hypothetical replication factor C large subunit [Sulfolobus tokodaii str. 7] Length = 413 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 79/199 (39%), Gaps = 24/199 (12%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSL 79 + + YG L ++ + F + ++ + +I T + + ++ Sbjct: 14 YKAVLLYGPPGVGKTTLAEALARDYKLEL---FEMNASDSRNLN-DIRTMAERASITGTI 69 Query: 80 FSKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--A 131 F K K+IL++ N + +D + E+I N + II+ +N+ + +LR + A Sbjct: 70 FGIKGKLILLDEVDGLNARADAGAIDAILELI--NKTKYPIILTAND-PWDPSLRPLRNA 126 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 K + ++ YP L ++++ + + EA ++ GD +R + L Sbjct: 127 VKMIELKRLTKYP-----LKRILKKICEAEKITCEDEALDFIIEQSEGD---ARYAINML 178 Query: 192 SSYCLEDILITEQHVKDII 210 +T K+++ Sbjct: 179 QGVAEGYGRVTLDMAKNLV 197 >gi|15834937|ref|NP_296696.1| hypothetical protein TC0317 [Chlamydia muridarum Nigg] gi|270285108|ref|ZP_06194502.1| hypothetical protein CmurN_01613 [Chlamydia muridarum Nigg] gi|270289129|ref|ZP_06195431.1| hypothetical protein CmurW_01673 [Chlamydia muridarum Weiss] gi|301336503|ref|ZP_07224705.1| hypothetical protein CmurM_01670 [Chlamydia muridarum MopnTet14] gi|7190359|gb|AAF39182.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 314 Score = 37.3 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 3/99 (3%) Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244 +E QKL + V+ + + ++ +A ++ + L ++ Sbjct: 182 SEFQKLICQIGGKSCLEASDVQSFVEKRESASLWKLRDALLRRDLSTGQSLMQSLVSDLG 241 Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283 A+L+ ++ L + I E S +I Sbjct: 242 EDPLAILNFLRSQY--LSGLRAIAEQSKDRKTQIFFAAG 278 >gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001] Length = 712 Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 78/239 (32%), Gaps = 39/239 (16%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 ++ + + + K+ +I+ + + + L + + + I + E++K Sbjct: 201 DDVREIIDATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRK 260 Query: 124 ----------NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173 LR++ + L+ L +S +A ++ Sbjct: 261 VPVTVLSRCQRFDLRRV---------------PQSELVGLFSRIADKEHVRLSPDALALV 305 Query: 174 LANLGGDRIASRNELQKLSS-YCLEDILITEQHV--KDIICDTHVLY----IEEIINATI 226 G + R+ L L V +I D L + +++ A + Sbjct: 306 ARAADG---SVRDGLSLLDQAIAQGTGQTDADGVIGATVISDMLGLADREVVFDLLEAVL 362 Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII---KECSNISFEKIIQKT 282 GK A+ L D A +L L+ + ++ + ++ +++ + ++ T Sbjct: 363 TGKPEQALALLDAAYARGADPGLVLGDMLELVHTVSRLRAVPSLRDSADMPEAERVRGT 421 >gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction resolvase [butyrate-producing bacterium SSC/2] gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] Length = 438 Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 21/131 (16%) Query: 146 NKIHLMDLI-------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196 +K + LI E+ + I +I+ +A L GD ++ N ++ Sbjct: 169 DKEDIKKLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSALNAIELGILTTEPA 228 Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 I I ++ I D H I I + AI + + Sbjct: 229 EDGKIHIDIDVAQECIQRRVTKYDKDGDNHYDVISAFIKSMRGSDPDAAIYYLARMIDAG 288 Query: 245 MPSHALLHGFL 255 + + Sbjct: 289 ESVTFIARRIM 299 >gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica DFL-43] Length = 639 Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L I E+ ++ G + L + + Q Sbjct: 222 ETGALASHFSSVAAQEGIGIDDESLSMIARAAEGSVRDGLSLLDQAI--AHGGGQVDAQA 279 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + E+ + G + A+ S +L L+ ++ Sbjct: 280 VRAMLGLADRSRVVELFGNLMAGDVAAALTGFRDQYDSGAGPSVILTDLADFTHLVTRLK 339 Query: 266 IIKECSNISFEKIIQKTE 283 + E ++ ++ Sbjct: 340 FVPEAADDPSLTETERER 357 >gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] Length = 456 Score = 37.3 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%) Query: 144 PDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDI 199 ++ L+ L +E G+ SI+ +A L+ G D R + E + + Sbjct: 186 EEDIRTLVARALEDERGFAGRLSIAADALDNLVRIAGRDGRRSLTLLEAAAEGARTRGET 245 Query: 200 LITEQHVKDI----------ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 I V D H + I + + A+ L++ Sbjct: 246 TIELADVAKASDGATVRYDRAGDQHYDVVSAFIKSIRGSDVDAAMHYLARMLSAGEDPRF 305 Query: 250 LLHGFL 255 + + Sbjct: 306 IARRLM 311 >gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small subunit 2; AltName: Full=Clamp loader small subunit 2 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str. IM2] Length = 319 Score = 37.3 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 39/238 (16%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 +I E + +F + + PF LV+L+ + + S + + ++I+ I Sbjct: 82 NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130 Query: 92 STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151 +T +L II+ I + ++I+ + + K ++ Sbjct: 131 NTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARL--------------------- 169 Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 I E +S +A + + GD R + L +TE+ V + Sbjct: 170 RYIAE---NEGVKVSDDALEAIYEFTQGDM---RRAINALQIAATVSKAVTEEVVAKALG 223 Query: 212 DTHVLYIEEIINATIQGKI-YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + E + ++G A + F + ++ ++ L+ +K Sbjct: 224 MVSPRLLRETLYEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVK 281 >gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CB0205] Length = 727 Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 21/131 (16%) Query: 146 NKIHLMDLIEESLL-------IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 HL L+E +L IS EA L+ GGD + N L+ D Sbjct: 170 ENRHLHQLLERALRDRERGYGERPVQISPEAAAHLVEVAGGDARSLLNALELAVETTEPD 229 Query: 199 IL----ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244 IT ++ I D H I I + A+ + + Sbjct: 230 GEGQIVITLAIAEESIQQRAVLYDKQGDAHFDTISAFIKSLRGSDPDAALFWLAKMIEAG 289 Query: 245 MPSHALLHGFL 255 + L Sbjct: 290 ENPRFIFRRML 300 >gi|239904682|ref|YP_002951420.1| glycogen phosphorylase [Desulfovibrio magneticus RS-1] gi|239794545|dbj|BAH73534.1| glycogen phosphorylase [Desulfovibrio magneticus RS-1] Length = 817 Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 6/90 (6%) Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 E + I+ + + +++ + +L E+L W +L+ L + I Sbjct: 333 ELMRILVDEEFLGWDEAWDICRRTFAYTNHTVLPEALETWPADLLGRVLPRHLEIIAEID 392 Query: 322 KKKYLEKNII------FQTILYIAQTACKN 345 ++ LE + Q L I A + Sbjct: 393 RRFLLEVAVAHPGDQVRQNRLAIIDPASRR 422 >gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001] Length = 645 Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 10/151 (6%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L + +I+ EA ++ G + + L +LS + V Sbjct: 185 ESLEGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLL---PPPVEVDAVW 241 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 D++ + ++ A + I L A+L G + L Sbjct: 242 DLLGAVPEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDLVL---- 297 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESL 298 + + +++ + L SL Sbjct: 298 ---AGTAPDRLELTAVSPQFRPQLPGLARSL 325 >gi|311743404|ref|ZP_07717211.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum DSM 15272] gi|311313472|gb|EFQ83382.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum DSM 15272] Length = 679 Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 9/174 (5%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 L D + + Q ++ A +++ GG + + L +L +T Sbjct: 184 KTLGDYLLQLCSAEQVTLDTAALPLVVRAGGGSVRDTLSVLDQLLGGAGPQG-VTYDLAV 242 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ T ++EI++A + D + S LQ+ + L + + Sbjct: 243 QLLGYTPDSLLDEIVDAFAATDARTVFGVVDKVIESGQDPRRFTEDLLQRLRDLVVLRAV 302 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 + + + LQ + + ID + R Sbjct: 303 PTAVEVGLLDLPAD--------RTERLQAQAAGFGPAELVRIADHIDAALTEFR 348 >gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC 53516] gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC 53516] Length = 538 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 70/179 (39%), Gaps = 10/179 (5%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 L +I+ + + + I+ + EI K T+ +++ + N + D I+ L Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NAKDISDNIKYIL 189 Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + + +A +++ G + + L ++ +E IT+Q + DI+ I Sbjct: 190 NDLNRKMDDDAIKLIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 +++N+ I+ + + ++ P ++ L F+ L E + + Sbjct: 248 FKLVNSIIKKDAAEVLNNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLENIRQNNTQ 305 >gi|126340410|ref|XP_001367767.1| PREDICTED: similar to regulator of nonsense transcripts 2 [Monodelphis domestica] Length = 1292 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L +++ + I+ E K + +G EL K + Sbjct: 630 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 793 Query: 310 LHKI 313 + K+ Sbjct: 794 MRKL 797 >gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 46/141 (32%), Gaps = 9/141 (6%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDI 209 +++ L SI ++ + + + + L +L +Y ++ IT + + + Sbjct: 287 AILKHKLKNYSLSIDEKILEFIAERIKTNVRQLEGALNRLCAYASIHKEGKITLEETQSL 346 Query: 210 ICDTHVLYIEEIINATI-------QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262 + D L + I + I + M++ +++ + ++ L Sbjct: 347 LKDLISLQPSKTITIEMIQKRVCEAYDIRFSDMVSKRRISAIALPRMVAMYLARRLTNLS 406 Query: 263 KIHIIKECSNISFEKIIQKTE 283 I + ++ Sbjct: 407 LSQIGENFGGRDHGTVLHAQR 427 >gi|269792907|ref|YP_003317811.1| Phosphoglycerate mutase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100542|gb|ACZ19529.1| Phosphoglycerate mutase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 25 IFYGSDKGL-IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 + +G +GL + E+ ++ + + DPF ++ + + S+ + ++ Sbjct: 84 LDFGRWEGLTVREIEERYGEEYRLWRQDPFGRTPPGGEDLASITGRLEDFVESSGILGEE 143 Query: 84 KIILIENLSTEKKVLDCLEEI 104 + +L+ + + ++ L ++ Sbjct: 144 RAVLVSHGYALRVLMGVLLKV 164 >gi|253756509|ref|YP_003029649.1| ATPase [Streptococcus suis BM407] gi|251818973|emb|CAZ56820.1| putative ATPase [Streptococcus suis BM407] Length = 428 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210 +I EA L GD A+ N L+ I V++ + Sbjct: 174 ITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYISMD 233 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 D H + + + + ++ A + ++ + ++ + + Sbjct: 234 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 293 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327 + ++ + QK P R ++ + +D + RK +L Sbjct: 294 QIHTVTALEAAQKIG---FPEARILIANVVVDLALSPKSNSAYLAMDAALADLRKNGHLP 350 Query: 328 KN 329 Sbjct: 351 IP 352 >gi|291294546|ref|YP_003505944.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber DSM 1279] gi|290469505|gb|ADD26924.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber DSM 1279] Length = 890 Score = 37.3 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 41/121 (33%), Gaps = 10/121 (8%) Query: 216 LYIEEIINATIQGKIYNAIMLADF-FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274 +++++ A ++G + L + + + + + G +F LEK+ + + Sbjct: 597 AQLQDLVIAALEGDVAAYNQLIHNPQVPADLKARLVKGGIPAQFAQLEKLLLAALNGDAQ 656 Query: 275 FEKIIQK--TEKNIIPMKRN------ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 + +Q+ + ++ L+ L+ + R+ L Sbjct: 657 AYQAVQQNPQIPPAFKSQIPQGGLAAQVEAQLQA-TARLLEAAWQGDESAQQALRQNPRL 715 Query: 327 E 327 + Sbjct: 716 D 716 >gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7] gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7] Length = 428 Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 14/145 (9%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII 210 E+ Q +I+ EA GD +S N L+ D IT ++ I Sbjct: 167 EKGFGNEQVTITDEALLHFSRATNGDLRSSLNGLELAIKSTAPDEKGIITITLDIAEECI 226 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260 D H I + + + A+ + + + ++ Sbjct: 227 QRKALTHDKDGDAHYDVISALQKSIRGSDVDAAMHYLARLIEAGDLPIISRRLMVIAYED 286 Query: 261 LEKIHIIKECSNISFEKIIQKTEKN 285 + + ++ + +K Sbjct: 287 IGLANPSAASRTVTAVQAAEKLGFP 311 >gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides ATCC 17025] Length = 582 Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 36/113 (31%), Gaps = 2/113 (1%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 ++ +A ++ G + + + + T V+ ++ + Sbjct: 204 KEGARLTADALALITRAAEGSVRDAMSLMDQAI--AHGAGETTADEVRAMLGLADRGRVL 261 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 ++ + ++G A+ A A+L + + I I + ++ Sbjct: 262 DLFDLVMKGDAAGALAELSGQYADGADPMAILRDLAEITHWISIIKISPDAAD 314 >gi|325847794|ref|ZP_08170016.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480812|gb|EGC83865.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 443 Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 21/127 (16%) Query: 146 NKIHLMDLIEESLLIGQK------SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 L LI+ +L + I K+A+ L+ GD A N L+ ++ + ED Sbjct: 169 TNEDLHKLIDMALTKDKVLQNKNIKIDKDARNTLVKFSNGDCRALLNALE-IAIFSQEDK 227 Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 + Q + + I D H I I + AI L S Sbjct: 228 EGIIEVDRQSILNSIQKKISIYDRNGDRHYDTISAFIKSMRGSDPDAAIFYLAKMLNSGE 287 Query: 246 PSHALLH 252 + Sbjct: 288 DIKFIAR 294 >gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group] Length = 1012 Score = 37.3 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 + ++I + + I+ S + + + +KF C +++ ++ Sbjct: 466 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 519 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + ++A +++ + G + L +LS I+ V++++ + + Sbjct: 520 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 576 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 +++ + N + + + AL L I +F + + Sbjct: 577 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 627 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + K L + + +R+ L + R + + +L +A Sbjct: 628 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 679 >gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735] Length = 599 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 28/224 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151 + + + + + I I+ EK + I Y ++ + Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183 Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + IE + +EA ++ G + + + +S+C IT Q V + Sbjct: 184 NTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + +II+ + K+ ++L + L L+ G + + Sbjct: 242 DLNVLDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR--- 298 Query: 269 ECSNISFEKIIQKTEKNIIPMKRN----ILQESLRIWNKNLVRE 308 + + + Q+ + + L ++L++ N+ + Sbjct: 299 DVQTLPLLETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINY 342 >gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis IC-167] gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis IC-167] Length = 418 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 84/225 (37%), Gaps = 19/225 (8%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81 + G +++ + + ++ + V A I++ I + SLF Sbjct: 44 RAILLSGPPGTGKTTMVHALAYDYGLELYEMNASDVRTASRIRETIGK---ALTQGSLFG 100 Query: 82 KK-KIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 + K++L + + ++ + + +I+ + I + +N+ + LR + Sbjct: 101 FRGKLVLFDEVDGINVRADQGGIYEIVDIVKE--AKVPIAMTAND-PWDPKLRPL---RD 154 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + P +++++ + ++A +++ + GD ++ N+LQ ++ Sbjct: 155 ICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTVA--- 211 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 E +T + V + H + +++ ++ + Sbjct: 212 -ETGPVTRERVSLLSSRAHQYDMFRMVDMVLKANTVASATGVTRL 255 >gi|302024613|ref|ZP_07249824.1| recombination factor protein RarA [Streptococcus suis 05HAS68] Length = 378 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210 +I EA L GD A+ N L+ I V++ + Sbjct: 124 VTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMD 183 Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 D H + + + + ++ A + ++ + ++ + + Sbjct: 184 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 243 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327 + ++ + QK P R ++ + +D + RK +L Sbjct: 244 QIHTVTALEAAQKIG---FPEARILIANVVIDLALSPKSNSAYLAMDAALADLRKNGHLP 300 Query: 328 KN 329 Sbjct: 301 IP 302 >gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] Length = 434 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 10/105 (9%) Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII------- 210 L + E + + + GD + N L++ ++ + IT + ++ ++ Sbjct: 186 LGARNLQVKDELLEDIGIFVNGDGRMALNILEQAAAMVHDGEEITLEILEKVVGRRIYTY 245 Query: 211 ---CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 D+H I I + + + + + + + Sbjct: 246 DKKGDSHYDTISAFIKSMRGSDVQATLHYLARMIEAGEDPNFIAR 290 >gi|239909103|ref|YP_002955845.1| hypothetical protein DMR_44680 [Desulfovibrio magneticus RS-1] gi|239798970|dbj|BAH77959.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 331 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 37/325 (11%), Positives = 91/325 (28%), Gaps = 33/325 (10%) Query: 29 SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88 D ++ E + + PFS V E FW+ + SLF+ ++ +++ Sbjct: 12 PDPEIVRERVER----QLADSGQPFSREVFWGDEELGAP--FWSALTVGSLFAGRRAVIL 65 Query: 89 ENL-STEKKVLDCLEEIIIKNICNH--IIIIKSN-EIKKNNTLRK---------IAEKFT 135 + L + + + K K +AEK Sbjct: 66 RRAEAAPPDFWPKLTPALKGFNDAVWPFFCFEGPLDKKGGPKFPKTLTEQPYFTVAEKRK 125 Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195 + + + + + + + L A L + NEL KL Sbjct: 126 WIFVSP--GLTRRDMGPRLADWAGRRGLVLEPGVAEALAAALPASLAHADNELAKLELSL 183 Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGK--IYNAIMLADFFLASKMPSHALLHG 253 + + ++ + +NA +G+ + D LA + + Sbjct: 184 GDRTSLEMAD-LALLSHHEGMDGFAFLNALSEGRDPTKVWQEIFDKELAGEEMIFPFIGL 242 Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313 L + +++ ++ + + + ++ + L + E Sbjct: 243 LLYEARMMWRL---------AVGEADDVRLPPQVRRQKEAMARRLGSAGLTRLFEAAFAA 293 Query: 314 DHRIHLARKKKYLEKNIIFQTILYI 338 + I +K + + + Sbjct: 294 EAGIKTGARKPDQAMEFLTAELFRL 318 >gi|269126366|ref|YP_003299736.1| AAA ATPase central domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311324|gb|ACY97698.1| AAA ATPase central domain protein [Thermomonospora curvata DSM 43183] Length = 463 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 55/205 (26%), Gaps = 38/205 (18%) Query: 147 KIHLMDLIEESLLIGQ-----KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-- 199 + L +IE +L + +++ EA L+ GGD + L+ + Sbjct: 186 EQDLRRVIERALTDARGLGGAVALTDEAADHLVRLAGGDARRALTYLEAAALVAGAGRAD 245 Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 I ++ + D H I I + + A+ L + Sbjct: 246 AAKATIDVAVLEKAVDRAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMLEAGE 305 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII-------PMKRNILQESL 298 + + E ++ +Q P R L +++ Sbjct: 306 DPRFIARRLIVH---------ASEDVGMADPTALQTAVAAAHAVEFVGLPEARINLAQAV 356 Query: 299 RIWN-KNLVRETLHKIDHRIHLARK 322 + ID I RK Sbjct: 357 IHLALAPKSNAVITAIDQAIGDVRK 381 >gi|152964436|ref|YP_001360220.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] gi|151358953|gb|ABS01956.1| DNA polymerase III, subunits gamma and tau [Kineococcus radiotolerans SRS30216] Length = 712 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 1/112 (0%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L + E I K +++ GG + + L +L + ++ +T + Sbjct: 184 LTAYLAELAEREGVRIGKGVLPLVVRAGGGSVRDTLSVLDQLIAGAGDEG-VTYDIAVSL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 + TH +++++ A G + + + LQ+ + L Sbjct: 243 LGYTHASLLDDVVEALAAGDGATVFRAVERVVDTGQEPRRFADDLLQRLRDL 294 >gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis W1] gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1] Length = 450 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 69/199 (34%), Gaps = 28/199 (14%) Query: 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80 + + YG L + + + ++ ++ + S SLF Sbjct: 41 NKALLLYGPPGTGKTTLAQALAHDYGLEL---LEMNASDSRNLEAIKNIAQRAAVSGSLF 97 Query: 81 SKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRK 129 K K+I ++ N + + + E++ K + +++ +N+ +++ L K Sbjct: 98 GTKGKLIFLDEVDGINARQDMGAIPAIAELVQK--TRYPVLLAANDPWDPSLRELRNLAK 155 Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189 + E + Y L ++ + + +A ++ GD +R + Sbjct: 156 LVEVKK----LGKYA-----LRKILGKICTSEKLQCDDDALDEIIEISDGD---ARYAIN 203 Query: 190 KLSSYCLEDILITEQHVKD 208 L + +T + VK+ Sbjct: 204 LLEATAEGFKKVTVESVKE 222 >gi|332665533|ref|YP_004448321.1| DNA polymerase III subunits gamma and tau [Haliscomenobacter hydrossis DSM 1100] gi|332334347|gb|AEE51448.1| DNA polymerase III, subunits gamma and tau [Haliscomenobacter hydrossis DSM 1100] Length = 589 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 73/217 (33%), Gaps = 24/217 (11%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109 F++ L+A ++I ++ K K+ +I+ + ++ + + + + Sbjct: 90 FNISELDAASNNSVEHIRALIEQVRFQPQQGKYKVFIIDEVHMLSQQAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKIHLMD--LIEE---SLLIGQ 162 I I+ EK + I C + + ++ Sbjct: 150 SYAIFIL------------ATTEKHKIIPTILSRCQIFDFKRIQAPAMVRHLQGISTKEN 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + ++EA ++ G + + ++ SY I + V + Y +I+ Sbjct: 198 ITANEEALHVIAQKADGALRDALSIFDRIVSYSG--SHINYEDVILNLNVLDYDYYFKIV 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 +A + + ++L D L S ++G + + Sbjct: 256 DALLVEDLAQVMLLFDEILNKGFESDIFINGLAEHLR 292 >gi|213966130|ref|ZP_03394317.1| recombination factor protein RarA [Corynebacterium amycolatum SK46] gi|213951228|gb|EEB62623.1| recombination factor protein RarA [Corynebacterium amycolatum SK46] Length = 488 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%) Query: 148 IHLMDLIEESLLIGQ-----KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 + LI+ +L + S++ +A++ L+A GD S L+ + + IT Sbjct: 217 GAVGTLIDRALTDERGLNGRVSMTDDARKQLIALAAGDARRSLTYLEAAAEAVADGEQIT 276 Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + + + I D H I + + A+ + + Sbjct: 277 AESLANSINRAVVRYDRDGDQHYDVTSAFIKSVRGSDVDAALHYLARMIEGGEDPRFIAR 336 >gi|88856257|ref|ZP_01130917.1| ATPase related to the helicase subunit [marine actinobacterium PHSC20C1] gi|88814576|gb|EAR24438.1| ATPase related to the helicase subunit [marine actinobacterium PHSC20C1] Length = 472 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 18/126 (14%) Query: 145 DNKIHLM--DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE----- 197 D L+ + + L + EA+ +L+ GD + L+ + Sbjct: 200 DEVGELVDRAVTDARGLKNAVVLEPEARALLVRLSSGDARRALTALEASAVSAANHSDAQ 259 Query: 198 -DILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 ++T +HV + D H I I + + AI + + Sbjct: 260 SPAVVTAEHVASAVDRALLRYDRQGDEHYDVISAFIKSVRGSDVDAAIHYLARMIEAGED 319 Query: 247 SHALLH 252 + Sbjct: 320 PRFIAR 325 >gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC 23445] gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC 23445] Length = 602 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|330821263|ref|YP_004350125.1| Glycosyl transferase, group 1 [Burkholderia gladioli BSR3] gi|327373258|gb|AEA64613.1| Glycosyl transferase, group 1 [Burkholderia gladioli BSR3] Length = 409 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 71/241 (29%), Gaps = 26/241 (10%) Query: 68 STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---- 123 +EI + + ++ + + + + +++ +++ Sbjct: 158 GKVADEIRRLGIDGNRIGVIYNGVDAQAFGGAQPDRGAYALPQDAFLLLFVGDLRTPRKN 217 Query: 124 -NNTLRKIAEKFTSV-LAIS------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175 L+ + E V LA++ YP+ L I + + L++ Sbjct: 218 LGTVLKALTELPEHVHLAVAGYLPGSPYPEEARALG--IASRVHFLGLV---KTMPQLMS 272 Query: 176 NLGGDRIASRNE---LQKLSSYCLEDILITEQHV--KDIICDTHVLYIEEIINA-TIQGK 229 ++ SR E L L + ++T + +II + +++ +A + G Sbjct: 273 SVDAYVFPSRYEAMSLSLLEAMAAGLPVVTARTAGGAEIITADCGIVLDDPDDANALAGA 332 Query: 230 IYNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286 I + + + AL++ F Q L + Sbjct: 333 IGSLAHSRERCREMGRAARALMNDFGWNQMGAQYLALYRRLISQPQPISSGTQAVNPPPA 392 Query: 287 I 287 Sbjct: 393 H 393 >gi|218189003|gb|EEC71430.1| hypothetical protein OsI_03625 [Oryza sativa Indica Group] Length = 815 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 64/191 (33%), Gaps = 19/191 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ ++ + ++A +++ + G + L +LS I+ V++ Sbjct: 293 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 349 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + N + + + AL L I Sbjct: 350 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLAL-------MSQLATIITDI 402 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 + +F + ++ + KR L + + +R+ L + R + Sbjct: 403 LAGSYTFTR--ERLRRKFF--KRPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KT 453 Query: 329 NIIFQTILYIA 339 + +L +A Sbjct: 454 TWLTAALLQLA 464 >gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae TMO] Length = 465 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 24/207 (11%) Query: 59 NALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNIC 110 + +E+ + +EI + S KI +I+ ++ + L + + + Sbjct: 87 DVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIYIIDEFHMLTREAFNALLKTLEEPPE 146 Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQKSI 165 + ++ + + E+ + C + +++ I + + Sbjct: 147 KVLFVLATTNL----------ERVPQTIISRCQVIEFRNFSEDAILENIRKVAHFESIEL 196 Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 ++A +++ G + + L+++++Y + +IT Q V+ + ++ I A Sbjct: 197 HEDAARMIARRASGGMRDALSYLEQIANYA-DGQVITPQVVEKALGLVPDEIVQRYIKAI 255 Query: 226 IQGKIYNAIMLADFFLASKMPSHALLH 252 G + L D S + LL Sbjct: 256 RNGLVKEVGELVDEVHRSGLDVDQLLQ 282 >gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus] Length = 425 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 24/201 (11%) Query: 143 YPDNKIHLMDLIEESLLIGQKSI-------SKEAKQILLANLGGDRIASRNELQKLSS-- 193 YP ++ + + +L ++ + ++A GD ++ N L+ Sbjct: 149 YPLDENDIKVSLNRALNDEERGLASYNPIVDEDAMSYFTTQSQGDVRSALNALELAVLSS 208 Query: 194 -YCLEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 IT Q KD + D H + + + A+ + Sbjct: 209 DTTDSQRYITLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIE 268 Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIW 301 + + + + E I + + I+ E+ P R L ++ + + Sbjct: 269 AGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELC 325 Query: 302 NKNLVRETLHKIDHRIHLARK 322 + ID + RK Sbjct: 326 LSPKSNSGISAIDAALSDIRK 346 >gi|15790579|ref|NP_280403.1| replication factor C large subunit [Halobacterium sp. NRC-1] gi|10581095|gb|AAG19883.1| replication factor C large subunit [Halobacterium sp. NRC-1] Length = 501 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 83 KKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTS 136 +K++L++ ++ + ++ I++ +NE + +++LR Sbjct: 129 RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQ--PIVLVANEYYEMSSSLRSAC----- 181 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +K ++ ++ + + ++A + GD ++ N+LQ L Sbjct: 182 -REIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQAL---AE 237 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +D +T V D + + + A+ A Sbjct: 238 QDRTLTADDVVMGERDRTEGVFDYLDDVIATHSAREALQAA 278 >gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885] gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885] Length = 500 Score = 36.9 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 14/117 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII 210 E L + + EA L+ GGD ++ N L+ IT ++ I Sbjct: 200 ERGLGNYRVEVEPEALDHLVRVAGGDARSALNALELAVLTTPPGEDGVRRITLAVAEESI 259 Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D H ++ +I + A+ L + A+ L Sbjct: 260 QKRALAYDPTGDEHYDHLSALIKSIRGSDPDAAVYWLARMLYAGEDPRAIARRLLVH 316 >gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group] Length = 1050 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 64/191 (33%), Gaps = 19/191 (9%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 +++ ++ + ++A +++ + G + L +LS I+ V++ Sbjct: 527 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 583 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 ++ + ++++ + N + + + AL L I Sbjct: 584 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLAL-------MSQLATIITDI 636 Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328 + +F + ++ + KR L + + +R+ L + R + Sbjct: 637 LAGSYTFTR--ERLRRKFF--KRPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KT 687 Query: 329 NIIFQTILYIA 339 + +L +A Sbjct: 688 TWLTAALLQLA 698 >gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330] gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330] Length = 602 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str. Tulya] Length = 602 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC 23457] gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv. 1 str. 16M] gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis ATCC 23457] gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1 str. 16M] gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str. Rev.1] gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2 str. 63/9] gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28] gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis M5-90] Length = 602 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|86261629|emb|CAI47642.1| putative phosphorylase or hydrolase [Streptoalloteichus hindustanus] Length = 780 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 44/176 (25%), Gaps = 12/176 (6%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 I E L + S EA+ + + E + + +I + V D Sbjct: 215 ITERLAVLAASAEPEARDVCFGRVR------HAEALRFAGGAGREIRVDTVAVISTNFDD 268 Query: 214 HVLYIEEIINATIQGKIYNAIML------ADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + ++ ++A + A + + +F L I Sbjct: 269 DAVSVDPDVDAVPDIDLVVAEHERIWAERWRRHAEVEGDPAIVQGMRYSQFHLFGSIDRG 328 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + N+ + + W + + + A ++ Sbjct: 329 RTVHNVPARGLSSEYHSGHFFYNTEFFALPHAAWTDPAAAKAMLRFRVATLDAARE 384 >gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] gi|325553081|gb|EGD22761.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] Length = 398 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 5/136 (3%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 L+E+ + +++ GG S + L +L + E+ +T ++ Sbjct: 170 GLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG-VTYARALALLG 228 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T V I+E ++A D + + L++ + L + + + + Sbjct: 229 VTDVALIDEAVDALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPDAA 288 Query: 272 NI----SFEKIIQKTE 283 + ++ + Sbjct: 289 ERGLVDAPGDVLDRMR 304 >gi|312137857|ref|YP_004005193.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] Length = 723 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 5/136 (3%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 L+E+ + +++ GG S + L +L + E+ +T ++ Sbjct: 184 GLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG-VTYARALALLG 242 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T V I+E ++A D + + L++ + L + + + + Sbjct: 243 VTDVALIDEAVDALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPDAA 302 Query: 272 NI----SFEKIIQKTE 283 + ++ + Sbjct: 303 ERGLVDAPGDVLDRMR 318 >gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16] gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16] Length = 420 Score = 36.9 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 24/206 (11%) Query: 144 PDN-KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--- 196 PD+ + L + + L + I+ EA + L GGD A+ N L+ Sbjct: 153 PDDIEKALRRALADEERGLGHEKIDIAPEALRHLALACGGDVRAALNALELAVLSTPKQP 212 Query: 197 -EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 +T + + I D H + + + ++ L + Sbjct: 213 DGTRSVTLRSAEQSIQKKSIQHDKDGDAHYDVLSAFQKSIRGSDVNASLHYLARLLEAGD 272 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNK 303 + ++ + + ++ + ++ IP+ +++ +L Sbjct: 273 LISIHRRLLVIAYEDISLANPQAGPRTLAAIEASERLGLPEARIPLANAVVELALS---- 328 Query: 304 NLVRETLHKIDHRIHLARKKKYLEKN 329 +D I RK E Sbjct: 329 PKSNSAYKALDAAIDALRKGGSGEVP 354 >gi|330858491|ref|YP_004414866.1| putative tail fiber protein [Shigella phage Shfl1] gi|327397425|gb|AEA72928.1| putative tail fiber protein [Shigella phage Shfl1] Length = 1149 Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 6/131 (4%) Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 +KK N RK AE S+ I+ D + IE+ IS + L + + Sbjct: 874 MKKENGKRK-AEYTKSLKLIA---DETQARVTSIEQLKASFDDQISA-SNSELREVIATE 928 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE-EIINATIQGKIYNAIMLADF 239 A E+ +L + +DI + +++ I + + ++ + G A+ Sbjct: 929 TGALSREIDQLKAEIGDDIQASLTDIREAIANETEARTQADLSLSARLGNNEAALSQKLD 988 Query: 240 FLASKMPSHAL 250 ++ + A+ Sbjct: 989 SWSNADSTGAM 999 >gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1 str. 9-941] gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis biovar Abortus 2308] gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC 23365] gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6 str. 870] gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str. 513] gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str. 686] gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis B2/94] gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4 str. 292] gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M292/94/1] gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33] gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1] gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94] gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9 str. C68] gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus bv. 1 str. 9-941] gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region [Brucella melitensis biovar Abortus 2308] gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC 23365] gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19] gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str. 2308 A] gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM 4915] gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC 8038] gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40] gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292] gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str. 86/8/59] gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870] gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68] gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94] gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94] gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33] gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513] gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686] gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1] gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1] gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str. B3196] Length = 602 Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|254389993|ref|ZP_05005215.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] gi|197703702|gb|EDY49514.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%) Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D +T ++ T ++ +++A G A + D + + L++ Sbjct: 141 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 200 Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314 + L + + EK +I ++++ + + ++ Sbjct: 201 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 249 Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349 + R L+ + I + +L A ++ Sbjct: 250 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 287 >gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464] Length = 391 Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L ++L + +K I AK LL N GD +R L L + IT + Sbjct: 150 NKSDLDKLCAKALTLLKKQIEPSAKTYLLNNSAGD---ARALLNLLDLSAKIEDPITLET 206 Query: 206 VKDIICDTHVLY----------IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 ++ + + +I + +I +A + Sbjct: 207 LQSLRSHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265 >gi|163754680|ref|ZP_02161802.1| single-strand DNA specific exonuclease [Kordia algicida OT-1] gi|161325621|gb|EDP96948.1| single-strand DNA specific exonuclease [Kordia algicida OT-1] Length = 562 Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 13/140 (9%) Query: 32 GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91 G+ F+LI T D F + L A I +I E + + F K+I Sbjct: 197 GVGFKLIQALASKRGKTVTDLFPYLDLVATAIAADIVPLTGENRTLAYFG-MKVINKSPR 255 Query: 92 STEKKVLDCLEEIIIKNICNHIIII-----KSNEIKKN-NTLRKIAE-----KFTSVLAI 140 + K ++ L++ I + + ++ + I + + + + E +I Sbjct: 256 AGIKAIISQLKKK-EFTITDVVFVVAPRINAAGRISQGLHAVELLTENNLEVAKQYAASI 314 Query: 141 SCYPDNKIHLMDLIEESLLI 160 Y + L I + Sbjct: 315 EKYNSERRTLDQEITKEAFQ 334 >gi|124005566|ref|ZP_01690406.1| LAO/AO transport system ATPase [Microscilla marina ATCC 23134] gi|123989000|gb|EAY28593.1| LAO/AO transport system ATPase [Microscilla marina ATCC 23134] Length = 331 Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 + +E L + +S +A ++ + L DR +R +++L Y + + I V Sbjct: 10 DISQYVEGILQQDRVRLS-QAITLVESTLEEDRSLARQLIERLLPYTGKAVRIGITGV 66 >gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026] Length = 602 Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008] gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008] gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] Length = 433 Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 13/119 (10%) Query: 147 KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203 L I + L ++ E + + + GD + N L++ ++ ++ IT Sbjct: 172 GQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAAAMVPDEGTITI 231 Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 + ++ ++ D+H I I + + + + + + + Sbjct: 232 EVLEKVVGRRIYTYDKKGDSHYDTISAFIKSMRGSDVQATVHYLARMIEAGEDPNFIAR 290 >gi|284989074|ref|YP_003407628.1| DNA polymerase III subunits gamma and tau [Geodermatophilus obscurus DSM 43160] gi|284062319|gb|ADB73257.1| DNA polymerase III, subunits gamma and tau [Geodermatophilus obscurus DSM 43160] Length = 765 Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 L L+E++ + +++ GG S + L +L + E+ +T + Sbjct: 183 TLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEG-VTYKSAVG 241 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 ++ T ++E I+A D + + Sbjct: 242 LLGVTDDALLDETIDALAAHDAPGVFRAVDRVVEAGHDP 280 >gi|311233409|gb|ADP86263.1| DNA polymerase III delta [Desulfovibrio vulgaris RCH1] Length = 329 Score = 36.9 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%) Query: 64 QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120 + FW + LF + +++ N V L + + ++ Sbjct: 44 EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 102 Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162 E+ + + C + + ++ + +++ Sbjct: 103 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 152 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + A + A + D A+ EL KL D + + + ++ L I I Sbjct: 153 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGLDATLGPE-LAKLVSHEPDLDIFAFI 211 Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264 A G + L++ + L ++ Sbjct: 212 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 254 >gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis M163/99/10] gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M163/99/10] Length = 602 Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 441 Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 37/257 (14%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG + + T F + + +I E + + Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139 K IL + L + ++ II+I + E ++++ Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162 Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +P + ++ +IE + L I +AK+++ GGD + N L+ + Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAVV 222 Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238 Y ++ +I + K + D I I + A+ Sbjct: 223 YSSQAQDDGKIYISQESVINLSNRKTALYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282 Query: 239 FFLASKMPSHALLHGFL 255 L S + + Sbjct: 283 KMLDSGEDIKFIARRLI 299 >gi|255323655|ref|ZP_05364785.1| ATPase, AAA family [Campylobacter showae RM3277] gi|255299369|gb|EET78656.1| ATPase, AAA family [Campylobacter showae RM3277] Length = 394 Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 80/263 (30%), Gaps = 33/263 (12%) Query: 3 TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62 E +K +N + H +F YG +++ ++ F L E Sbjct: 19 QRELVGVFKKFIENKKIPHSIF--YGPAGCGKTSFARVVARSMEYDFY-EFDGGNLKIEE 75 Query: 63 IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSN 119 +K I S LF +I + E ++ II + N I + S Sbjct: 76 FRK-ILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAIIGASTENPYITLSSG 134 Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179 I+ + L E L+E + IS EAK L+ + GG Sbjct: 135 -IRSRSML---FEFKPLA---------SEDFEKLLERVRDEVKFDISDEAKAYLVKSSGG 181 Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE----------IINATIQGK 229 D +R L L D IT +++K + + + + I + Sbjct: 182 D---ARGLLNLLEFAVSLDEKITLENLKTLRANAVSEGVSDDDVHYGLASAFIKSLRGSD 238 Query: 230 IYNAIMLADFFLASKMPSHALLH 252 + + + + + Sbjct: 239 ENAVMYYLARLIDAGESADFIAR 261 >gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13] gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13] gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653] Length = 602 Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIKVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|227494434|ref|ZP_03924750.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226832168|gb|EEH64551.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 768 Score = 36.9 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 14/176 (7%) Query: 173 LLANLGGDRIASRNELQKL-SSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 L+ GG + R+ L L E+ +I+ + ++ T ++ I+ G Sbjct: 184 LVVRAGG--GSVRDSLSVLDQLMAGAENGVISYERAIALLGYTDGTLLDGIVTNLHAGDG 241 Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290 + + S + FLQ+ + L I + E + + I + Sbjct: 242 SAVFDALERMVDSGHDPRRFIEDFLQRLRDLLVISLAPEGAR--------TLLQGIPVEQ 293 Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHL--ARKKKYLEKNIIFQTILYIAQTACK 344 + + + W + + D + L+ ++ IL Q A K Sbjct: 294 SERMYQQAQQWGATKLSKAADLTDEALRSMVGATSPKLQVELLIGRILVEIQGAAK 349 >gi|289706015|ref|ZP_06502388.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58] gi|289557217|gb|EFD50535.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58] Length = 1152 Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 1/123 (0%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+ +E+ S+ K +++ G + + L +L + ++ ++ + + Sbjct: 184 LIAYLEQLCAEEGVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 T ++++I+A + D + S + L +F+ L + E Sbjct: 243 PGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302 Query: 270 CSN 272 + Sbjct: 303 EAG 305 >gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] Length = 450 Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 72/257 (28%), Gaps = 33/257 (12%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG L + F + + K + SL K Sbjct: 57 LILYGPPGCGKTSLAQVIARKTEGK----FIRINAVTSGVSKIREVIDKASKNRSLHGIK 112 Query: 84 KIILIE-----NLSTEKKVLDCLE----EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134 I+ I+ N S + +L +E +I N + S + ++ +R K Sbjct: 113 TILFIDEIHRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKK 172 Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 ++ I N E L IS++A Q L + GGD + N L+ Sbjct: 173 EDIIKILKNALNNE------ERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLT 226 Query: 195 CLEDILITEQHVKDII--------------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240 D K+II D H + I + A+ Sbjct: 227 TPPDKEGIIHINKNIISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARM 286 Query: 241 LASKMPSHALLHGFLQK 257 L S + + Sbjct: 287 LESGEDPRFIARRIIVH 303 >gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] Length = 461 Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%) Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199 + I+ +L + ++ EA+ L GD A+ N EL LS+ D Sbjct: 184 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 243 Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244 I I DT+ +II+A + A+ +A Sbjct: 244 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 300 >gi|239916820|ref|YP_002956378.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] gi|239838027|gb|ACS29824.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] Length = 1159 Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+ +E+ S+ K +++ G + + L +L + ++ ++ + + Sbjct: 184 LIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++++I+A + D + S + L +F+ L + E Sbjct: 243 LGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302 Query: 270 CSN 272 + Sbjct: 303 EAG 305 >gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp. EE-36] Length = 582 Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ L+ + I+++A ++ G + + L + T Sbjct: 188 EPEVMIALMRKIATAEGAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 V+ ++ + ++ + ++G A+ + A+L Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDL 294 >gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori SouthAfrica7] Length = 391 Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 13/119 (10%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 NK L L ++L + +K I AK LL N GD A L L + IT + Sbjct: 150 NKSDLDRLCAKALALLKKQIEPNAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKT 206 Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254 +K + D + + +++G ++ +A + Sbjct: 207 IKSLRPHSLNDGSYNDDTHYNLTSALIKSLRGSDENASLYYLARLIAGGENPEFIARRL 265 >gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum SK46] Length = 944 Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 10/175 (5%) Query: 95 KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMD 152 + L +I+ + H+I I + + T+R + L + Sbjct: 139 ASGFNALLKIVEEPPE-HLIFIFATTEPERVLPTIRSRTHHYPFRLLTPP------DMRG 191 Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 L+E + + + +++ GG S + + +L + D + + I+ Sbjct: 192 LLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQLIAGSGTDG-VDYETSAAILGV 250 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 T + I + I A G + + S L + + L + + Sbjct: 251 TDSVIITDAIEALAAGDRAAMFSVVGRVIMSGQDPARFASDLLGRVRDLLVLSAV 305 >gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] Length = 648 Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 8/105 (7%) Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204 D + + I++ + EA+Q+L N R L++L++ LE + + Sbjct: 549 DYSETIANQIDDEVRRFILDAHAEARQLLTDN--------REILERLATALLERETLDAE 600 Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 V I+ + + ++ + + A P A Sbjct: 601 EVDAIVGGRELPQRQRVVIPSYSDRDRAAKEKRRAASIFGTPKPA 645 >gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302] gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302] Length = 599 Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 28/224 (12%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151 + + + + + I I+ EK + I Y ++ + Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183 Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + IE + +EA ++ G + + + +S+C IT Q V + Sbjct: 184 NTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268 + +II+ + K+ ++L + L L+ G + + Sbjct: 242 DLNVLDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR--- 298 Query: 269 ECSNISFEKIIQKTEKNIIPMKRN----ILQESLRIWNKNLVRE 308 + + + Q+ + + L ++L++ N+ + Sbjct: 299 DVQTLPLLETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINY 342 >gi|253580934|ref|ZP_04858196.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847776|gb|EES75744.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 820 Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321 E + I+ + + +++ + T K++ I+ E+L W L L ++ I Sbjct: 330 ELMRILMDEEGLGWDEAWEVTRKSVAYTNHTIMSEALEKWPIELFSRLLPRVYQIIEEIN 389 Query: 322 KKKYLE 327 ++ LE Sbjct: 390 RRFILE 395 >gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM 11548] gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM 11548] Length = 421 Score = 36.9 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 121/350 (34%), Gaps = 38/350 (10%) Query: 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67 ++ ++ K + + + +G L++ K I + + V I++ + Sbjct: 44 RWAKRRDKEIKEAR-AVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVV 102 Query: 68 STFWNEINSTSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI 121 E SLF KI+L + + + L+ + +I I++ +N Sbjct: 103 GRGLREA---SLFGYAGKIVLFDEVDGLHVKEDLGGLEAILNLIET--AKVPIVLTANN- 156 Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181 + LR + + L + ++ ++++++ +EA + L + GD Sbjct: 157 PFDPKLRPLRDIS---LVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKSSYGD- 212 Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241 R + L Y ++T +K L + EI++ ++Y A + Sbjct: 213 --LRAAINDLQLYLAGRKVLTVDDIKRAGERNPQLSMFEILD-----RVYKARWFDEARA 265 Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 S PS F+ + + ++ E + +F+++ + I + + W Sbjct: 266 VSFNPSFDWEQYFVWALETIPIVYKDLEVMSEAFDRLSKADMFIGIVKRT-------QEW 318 Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNI-----IFQTILYIAQTACKNN 346 L+ + + + K L I +L ++ A + Sbjct: 319 --ELLSYAMELALGGVSQVKNKPRLPPFIRYGFPQRLLLLAKSKEARRRR 366 >gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125] gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125] Length = 428 Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 20/184 (10%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-----LEDILITEQHVKDI 209 L IS EA GGD ++ N L+ L+ + IT ++ Sbjct: 168 THGLGEEPVVISDEALAHFAFACGGDVRSALNGLE-LAVRSTQPNVKGEKEITLSVAEEC 226 Query: 210 I----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I D H + + + A+ + + + + Sbjct: 227 IQRKSFHHDKDGDAHYDVLSAFQKSIRGSDVNAALHYLARLIEAGDLVSIGRRLLVIAY- 285 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRIH 318 E I + + I+ E+ P + + + + +D I Sbjct: 286 --EDIGLANPQAGPRTLAAIEAAERLGFPEGRIPLANAVVELCLSPKSNSAYVALDAAIA 343 Query: 319 LARK 322 RK Sbjct: 344 DIRK 347 >gi|118081968|ref|XP_417288.2| PREDICTED: similar to regulator of nonsense transcripts 2 [Gallus gallus] Length = 1272 Score = 36.5 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L +++ + I+ E K + +G EL K + Sbjct: 631 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFSKN 682 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 794 Query: 310 LHKI 313 + K+ Sbjct: 795 MRKL 798 >gi|147903018|ref|NP_001089661.1| UPF2 regulator of nonsense transcripts homolog [Xenopus laevis] gi|71681268|gb|AAI00231.1| MGC115246 protein [Xenopus laevis] Length = 1264 Score = 36.5 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 27/192 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L +++ + I+ E K + +G EL K + Sbjct: 623 PCMSDIAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELAKFKMF--- 671 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 + T +K ++ D +IE + S + + LL ++K Sbjct: 672 NKTDTLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSSDSHLRTSVLLEQMMRK 726 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 727 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 786 Query: 310 LHKIDHRIHLAR 321 + K+ + + Sbjct: 787 MRKLSWQDLEVK 798 >gi|256826358|ref|YP_003150318.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] gi|256689751|gb|ACV07553.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM 20547] Length = 796 Score = 36.5 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 80/261 (30%), Gaps = 25/261 (9%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154 + L +I+ + + + I + E +K T+R + L L + + Sbjct: 135 AGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYPFRLVPP------AVLQEYL 188 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDT 213 + ++ ++ GG S + L +L D IT ++ T Sbjct: 189 AQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLI--AGSDDAGITLAGTTALLGFT 246 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIHIIKECS 271 ++ +++A G + + + S ++F L E++ + + Sbjct: 247 DSELLDGVVDAYAAGDGASLFTTVERVVESGQDP--------RRFVEDLSERMRDLILVN 298 Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH--RIHLARKKKYLEKN 329 + + + + + L+ + + H L+ Sbjct: 299 AVPTGT--EAVLPGVPSDQLDRLRVQASGLGPAELSRASDVLFHGLAEMTGATSPRLQLE 356 Query: 330 IIFQTILYIAQTACKNNNFYK 350 II +L + + A + + Sbjct: 357 IIMARLL-LPRAAGEGGFAAR 376 >gi|90424701|ref|YP_533071.1| ABC transporter related [Rhodopseudomonas palustris BisB18] gi|90106715|gb|ABD88752.1| ABC transporter related [Rhodopseudomonas palustris BisB18] Length = 587 Score = 36.5 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 40/231 (17%) Query: 73 EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--NNTLRKI 130 E + + + +++ L+ K L L + + I I +I + +LR Sbjct: 361 EGLTLRIGAGQRVGLVGQSGGGKSSLFVLLQRF-YDPQAGRITIDGQDITRVTQQSLR-- 417 Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE--------AKQILLANLG---- 178 AIS P + + E++ G+ + + + A+ + L Sbjct: 418 -------EAISVVPQDISLFHRSMLENIRYGRPTATDDEVLRAAIAARCDFVETLPEGLA 470 Query: 179 ---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 GDR KLS + I + + D +L ++E A + G AI Sbjct: 471 TMVGDRGV------KLS--GGQRQRIAI--ARAFLKDAPILLLDEA-TAALDGDSEEAIR 519 Query: 236 LADFFLASKMPSHALLH--GFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284 A L A+ H L+ F + + + + ++Q+ Sbjct: 520 EALGRLMRGRTVIAIAHRLATLRNFDRVVMLQAGRIIEDGPPGHLMQRQGP 570 >gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group] gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica Group] gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica Group] gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group] Length = 1023 Score = 36.5 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 + ++I + + I+ S + + + +KF C +++ ++ Sbjct: 489 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 542 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + ++A +++ + G + L +LS I+ V++++ + + Sbjct: 543 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 599 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 +++ + N + + + AL L I +F + + Sbjct: 600 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 650 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + K L + + +R+ L + R + + +L +A Sbjct: 651 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 702 >gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera] Length = 785 Score = 36.5 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 18/160 (11%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154 + + + + I + ++ E + C Y N + ++ + Sbjct: 583 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 632 Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214 + + +A +++ N G + L +LS IT V D++ Sbjct: 633 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 689 Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + E++ + + A + S + L+ Sbjct: 690 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQL 729 >gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24] Length = 391 Score = 36.5 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 13/116 (11%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 L L +++L + QK I AK LL N GD A L L + IT + ++ Sbjct: 153 DLDRLCDKALTLLQKQIEPGAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKTLQS 209 Query: 209 I----------ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + DTH I +I + +I +A + Sbjct: 210 LRPHSLNDGSYSDDTHYNLISALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265 >gi|241767459|ref|ZP_04765151.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] gi|241361752|gb|EER58047.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii 2AN] Length = 377 Score = 36.5 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 2/119 (1%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + + L +A ++L G + + + + E V+ ++ Sbjct: 192 LTQVLAAENVPAEPQALRLLSRAARGSMRDALSLTDQAI--AFGSGQLQEAAVRQMLGAV 249 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 Y+ +I+A QG + +D + + + + L Q + + + + Sbjct: 250 DRSYVFRLIDALAQGDGRTVVETSDALRINGLSAASTLEEMSAVLQRMAVFQAVPQMAG 308 >gi|256831655|ref|YP_003160382.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans DSM 20603] gi|256685186|gb|ACV08079.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans DSM 20603] Length = 872 Score = 36.5 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 54/172 (31%), Gaps = 9/172 (5%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 ++ I + + + +++ GG + + L +L + I+ +H Sbjct: 186 DTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQG-SAISYEHAV 244 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 ++ T ++++++A + + + + + L++F+ L + + Sbjct: 245 ALLGYTPATLLDDVVDALAAHDGAALFRVIEEIINTGHEPRRFVEDLLERFRDLLIVALS 304 Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 + + + + N + L + + + Sbjct: 305 PDGAR-----AVLSALPADQYERMNHQAQQL---GAGHLTYAADTTNTALTE 348 >gi|224092772|ref|XP_002191559.1| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolog [Taeniopygia guttata] Length = 1271 Score = 36.5 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%) Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 C D L +++ + I+ E K + +G EL K + Sbjct: 630 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFSKN 681 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257 D T +K ++ D +IE + S + + LL ++K Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733 Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309 Q + + N EK ++K + R +L + L V Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 793 Query: 310 LHKI 313 + K+ Sbjct: 794 MRKL 797 >gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC 6506] Length = 664 Score = 36.5 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + E +I+ +A Q++ G + + L +LS +T + V D++ Sbjct: 189 LREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAG---EVTVEKVWDLVGAV 245 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + ++ A I + +L Sbjct: 246 PENDLMALLEAIASDTTETVIDCVRHLMDRGREPLLVLQNL 286 >gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities AAA [uncultured archaeon MedDCM-OCT-S05-C724] Length = 321 Score = 36.5 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 4/117 (3%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L ++ ++KEA + L GD R + L +T V Sbjct: 161 AEDLEKYLKFVASKENVKVTKEAFESLTYLAQGD---LRRAINGLQMAAAAKTEVTPDVV 217 Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLE 262 + +++ + + + G A D + + +L + + LE Sbjct: 218 YQAVAAARPEEVKDALESALAGNFSTAREKLDTLQITYGLAGEDVLRQMHRTVRDLE 274 >gi|295112105|emb|CBL28855.1| DNA polymerase III, subunits gamma and tau [Synergistetes bacterium SGP1] Length = 576 Score = 36.5 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 30/259 (11%), Positives = 91/259 (35%), Gaps = 22/259 (8%) Query: 94 EKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152 + L + + + + I+ + E K T+R + I + + + Sbjct: 104 SAAAFNALLKTLEEPPSYVVFILATTEPYKVPVTIRSRCQH------IPFHSIGARKIFE 157 Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212 + + + EA + G + + L+++ + +T + V+ + Sbjct: 158 HLTHVCEWERTAAQPEALWEVARQADGALRDALSMLEQIINRAAG--EVTLEDVESALGA 215 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 +E + + ++G+ ++ + + P H F + F L++ + + N Sbjct: 216 GSRPAVERWL-SALKGEGSSSYVEFTKMMEGGSPQHV----FEELFSLVKNLWLAVRWPN 270 Query: 273 ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIF 332 ++ E + + ++ L E W+ +R L + + + R ++ + Sbjct: 271 VTRELDVSE-------QEKKFLAEEAPRWSAEELRTLLEAVANLLVQVRLGVRIDI-LTG 322 Query: 333 QTILYIAQTACKNNNFYKR 351 +L +++ + +R Sbjct: 323 LLMLELSRILEPDGAATRR 341 >gi|281414720|ref|ZP_06246462.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC 2665] Length = 774 Score = 36.5 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L+ +E+ S+ K +++ G + + L +L + ++ ++ + + Sbjct: 184 LIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++++I+A + D + S + L +F+ L + E Sbjct: 243 LGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302 Query: 270 CSN 272 + Sbjct: 303 EAG 305 >gi|212697090|ref|ZP_03305218.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM 7454] gi|212675865|gb|EEB35472.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM 7454] Length = 443 Score = 36.5 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 21/127 (16%) Query: 146 NKIHLMDLI------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 L LI ++ L I K+A+ L+ GD A N L+ ++ + ED Sbjct: 169 TNDDLHKLIGMALTKDKVLQNKNIKIDKDARNTLVKFSNGDCRALLNALE-IAIFSQEDK 227 Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 + Q + + I D H I I + AI L S Sbjct: 228 EGIIEVDRQSILNSIQKKISIYDRNGDRHYDTISAFIKSMRGSDPDAAIFYLAKMLNSGE 287 Query: 246 PSHALLH 252 + Sbjct: 288 DIKFIAR 294 >gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG] gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG] Length = 431 Score = 36.5 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%) Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199 + I+ +L + ++ EA+ L GD A+ N EL LS+ D Sbjct: 154 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 213 Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244 I I DT+ +II+A + A+ +A Sbjct: 214 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 270 >gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2] Length = 577 Score = 36.5 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 58/185 (31%), Gaps = 16/185 (8%) Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + S++ +A ++ G + + + + + V+ ++ + Sbjct: 203 ALEGASLAPDALALITRAAEGSVRDAMSLMDQAI--AHGAGETSAAQVRAMLGLADRGRV 260 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278 ++ + ++G A+ A A+L + + I I+ E Sbjct: 261 LDLFDLVMKGDAAGALSELSAQYADGADPMAVLRDLAEITHWISVIK-------ITPEAA 313 Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 T + L+ ++R+ L ++ + + ++ L N + + + Sbjct: 314 EDPTTPP--DERLRGLEMAVRL-----PMRALTRMWQMLLKSLEEVALAPNAMMAAEMAV 366 Query: 339 AQTAC 343 + Sbjct: 367 IRLTH 371 >gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group] Length = 1079 Score = 36.5 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%) Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 + ++I + + I+ S + + + +KF C +++ ++ Sbjct: 489 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 542 Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220 + ++A +++ + G + L +LS I+ V++++ + + Sbjct: 543 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 599 Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 +++ + N + + + AL L I +F + + Sbjct: 600 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 650 Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 + + K L + + +R+ L + R + + +L +A Sbjct: 651 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 702 >gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 441 Score = 36.5 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 37/257 (14%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG + + T F + + +I E + + Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139 K IL + L + ++ II+I + E ++++ Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162 Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +P + ++ +IE + L I ++AK+++ GGD + N L+ + Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVV 222 Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238 Y ++ +I + K I D I I + A+ Sbjct: 223 YSSQARDDGKIYISQESVINLSNRKTAIYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282 Query: 239 FFLASKMPSHALLHGFL 255 L S + + Sbjct: 283 KMLDSGEDIKFIARRLI 299 >gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 441 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 37/257 (14%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG + + T F + + +I E + + Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139 K IL + L + ++ II+I + E ++++ Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162 Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +P + ++ +IE + L I ++AK+++ GGD + N L+ + Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVV 222 Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238 Y ++ +I + K I D I I + A+ Sbjct: 223 YSSQARDDGKIYISQESVINLSNRKTAIYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282 Query: 239 FFLASKMPSHALLHGFL 255 L S + + Sbjct: 283 KMLDSGEDIKFIARRLI 299 >gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1] Length = 602 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 61/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTADA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|283138932|gb|ADB12535.1| putative transcriptional regulator [uncultured bacterium 9F08] Length = 468 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 22/168 (13%) Query: 62 EIQKNISTFWNEINSTSLFSKKKIILI------ENLSTEKKVLDCLEEIIIKNICNHIII 115 E+ + +EI L + K++ + L + + + + N Sbjct: 229 EMADGGTLLIDEIGELPLSLQTKLLRVLETGTFRRLGGTEYIQVNVRVLAATNK------ 282 Query: 116 IKSNEIKKNNTLRK--IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ-----KSISKE 168 E+ +N R+ + I D + L E L + +S + Sbjct: 283 -NLKEMSENGAFRQDLYYRLSAFPVNIPPLRDRPDDIPALAENFLSQIEEGDRFVPLSPD 341 Query: 169 AKQ-ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215 + +L + G+ RN +++ + + L+ +H+ + D Sbjct: 342 VIETLLSHHYPGNVRELRNVIERAAILAYGEELLRPEHIL-VESDAAE 388 >gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales bacterium HTCC2150] Length = 596 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 44/138 (31%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 ++ +++ + +I+ +A ++ G +++ L + T Sbjct: 190 EPEVMIKMLQGNAASENANITDDALALITRAAEGSARDAQSLLDQAI--SHGAGETTADQ 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ ++G A+ + A+L + + I Sbjct: 248 VRAMLGLADRGRVMDMFEMIMRGDAAGALAELSAQYSDGADPLAVLRDLAEITHWVSVIK 307 Query: 266 IIKECSNISFEKIIQKTE 283 I + + ++ Sbjct: 308 ITPDAAEDPTVGPDERAR 325 >gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] Length = 421 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 48/186 (25%), Gaps = 26/186 (13%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII----------CD 212 + + + + GGD + N ++ L+ + +T + + + D Sbjct: 177 LEVEDGVYEYIASACGGDVRKAVNAVELLALAAGANQTVTLEEARQVAQKSAMRYDRDGD 236 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 H + + + A+ L + L + L I Sbjct: 237 EHYDILSALQKSIRGSDENAALHYLARLLEAGD--------LLSPCRRLLVIASEDIGLA 288 Query: 273 ISFEKII------QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326 +I + + + + Q ++ + ID + R L Sbjct: 289 YPMAAVIVKACVDSALQLGLPEARIPLAQAAVLLATAPKSNSAYSGIDAALADVR--AGL 346 Query: 327 EKNIIF 332 I Sbjct: 347 AGPIPR 352 >gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4] gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4] Length = 435 Score = 36.5 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 22/191 (11%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210 E L +I +A + GGD + N L+ +S + +++ ++ + Sbjct: 185 ERGLGALDLAIEDDALTFMAEQAGGDARVALNTLET-ASRLTSNGVVSLDTAREAVQKKP 243 Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264 + H I I + A+ + + +L +++ Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPIFILR------RMVILA 297 Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319 ++ ++ + +P R I+ +++ + ID + Sbjct: 298 SEDIGNADPRALQVAVTALQGFQLVGMPEGRIIIGQAVTYLATAPKSNASYVGIDAALAE 357 Query: 320 ARKKKYLEKNI 330 RK L + Sbjct: 358 VRKSGALPVPL 368 >gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC 49242] Length = 610 Score = 36.5 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 31/286 (10%), Positives = 90/286 (31%), Gaps = 28/286 (9%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 ++ + + ++ K+ +I+ + K + L + + + + I + EI K Sbjct: 138 DDVREIIDNARYRPVMARTKVYIIDEVHMLSKAAFNGLLKTLEEPPEHVKFIFATTEIDK 197 Query: 124 -NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182 T+R ++F + L + +I +A ++ G Sbjct: 198 VPVTVRSRCQRFDLRRI------DAGLLASHLRGICEKENVAIEPDALAMIARAAEG--- 248 Query: 183 ASRNELQKL------SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236 ++R+ L L S I ++ ++ + ++ + G + AI L Sbjct: 249 SARDALSLLDQAIAYGSAHAAGGAIAADDLRLMLGVADKARVIDLFETVMAGDVGRAIAL 308 Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296 + +L + L ++ + E + + + P ++ + Sbjct: 309 LEDQYNGGADPAQVLLELAEFTHLATRLKLAPETAQSAA----------LTPEEKRRGSD 358 Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + + + + + R + + ++ +A A Sbjct: 359 AAERLSVPALTRAWQILMKGVDELRGSQRPLQA-ADMVLVRLAYAA 403 >gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2] Length = 602 Score = 36.5 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQALSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] Length = 425 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 23/196 (11%) Query: 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEI-NSTS 78 + +G L+ ++ + L +NA + + ++I S + Sbjct: 45 KAALLHGPPGCGKTSLVEAVARSKG------YQLFEMNASDARRKEDIDRIVKLASRSGA 98 Query: 79 LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 L +KIIL++ + + ++ L E+I + II+ +N + LR + E Sbjct: 99 LTGSRKIILLDEVDGMDPRADAGGIEALVEVIKA--TANPIIMTANN-PYSQALRPLREL 155 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 I ++ ++ ++++ + EA + + GD ++ N+L+ L Sbjct: 156 SE---VIGFKRLSESVVVKVLKKICGAEKLFCEDEALREIARRSEGDLRSAINDLEAL-- 210 Query: 194 YCLEDILITEQHVKDI 209 +T VK++ Sbjct: 211 -AGLSGGVTVNAVKEL 225 >gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 316 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 27/182 (14%) Query: 105 IIKNICNHIIIIKSNEIKKN--NTLRKIAEK---------------------FTSVLAIS 141 I + I + +++ + + + LR+ EK + + Sbjct: 94 IARVPVKIIFLDEADALTADAQHALRRTMEKFSAETRFILSANYASKIIEPIQSRCVVFR 153 Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201 P + + + + + ++ K A + L+ GD N LQ + + I Sbjct: 154 FKPLTEDDMKEYVNRIVKGEGITLEKNAMEALIYVGDGDLRKLTNVLQSAAM---KSEKI 210 Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQL 260 TE + D+ I ++ + G A D L M +L ++ Q Sbjct: 211 TEGDIYDVASRARPKEIMSMLRYAVDGDFDKARNELDTLTLKHGMSGEDILTQCYREAQN 270 Query: 261 LE 262 L Sbjct: 271 LH 272 >gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum 'So ce 56'] gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum 'So ce 56'] Length = 829 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 36/124 (29%), Gaps = 1/124 (0%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQH 205 + + L + A L G + + L ++ ++ IT + Sbjct: 216 AQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEG 275 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V ++ + + + A + G + + + FL + L Sbjct: 276 VAKVLGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAK 335 Query: 266 IIKE 269 + ++ Sbjct: 336 VCED 339 >gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae DFL 12] gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12] Length = 587 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 33/101 (32%), Gaps = 2/101 (1%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 + + + I+ +A ++ G + + L + T + V+ ++ Sbjct: 199 LRRIAGLERAEITDDALALITRAAEGSVRDAMSLLDQAI--SHGAGETTAEQVRAMLGLA 256 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + ++ + ++G A+ + A+L Sbjct: 257 DRGRVMDLFDLVMRGDAAGALTELSAQYSDGADPMAVLRDL 297 >gi|330941783|gb|EGH44532.1| type I restriction-modification system endonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 1142 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQI--LLANLGGDRIASRNELQKL-SSYCLEDI 199 + DN + ++ ++ +A ++ L A L G ++ S +++KL + Y Sbjct: 727 FADNAEAVKAAFQDYYRATIQTGETDANKLHDLKAELDGQQVYSWQQVEKLVAFYLGGAD 786 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242 T + DI + + ++E +GK + F A Sbjct: 787 RDTLDPILDICVEEYKDNLDEDGQVKFKGKAKAFVRSYGFLAA 829 >gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna BVS033A4] Length = 537 Score = 36.5 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 70/179 (39%), Gaps = 10/179 (5%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 L +I+ + + + I+ + EI K T+ +++ + N + D I+ L Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NSKDISDNIKYIL 189 Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + + +A +++ G + + L ++ +E IT+Q + DI+ I Sbjct: 190 NDLNRKMDDDAIELIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 +++N+ I+ + + ++ P ++ L F+ L E + + Sbjct: 248 FKLVNSIIKKDATEVLGNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLEKIRQNNTQ 305 >gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola 23] gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola 23] Length = 601 Score = 36.5 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 49/136 (36%), Gaps = 5/136 (3%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 + +D ++ + ++A ++ G + + + +S+C IT + V Sbjct: 182 RNTIDHLKHVAEQEGITYEEQALAVIAEKADGGMRDALSIFDQAASFC--QGNITYEKVI 239 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 + + +II+ I K+ + ++L + + L+ G + + + Sbjct: 240 EDLNVLDSENYFKIIDLAIDNKVSDIMVLLNGVINKGFDGGLLIQGLAKHVRNVLMAR-- 297 Query: 268 KECSNISFEKIIQKTE 283 + + ++ + Sbjct: 298 -DPQTLPLLEVSDQMR 312 >gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27] gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27] Length = 459 Score = 36.5 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC--- 211 + L SI +A+ +L + GD L+ +S + I V+ + Sbjct: 187 DRGLGARGLSIDDDARHLLAESSDGDARRLLGVLEAAASLVDDGGAIVRATVEAAMQYRP 246 Query: 212 ---DTHVLYIEEIINA---TIQG-KIYNAIMLADFFLASKMPSHALLHGFLQ 256 D +I+A ++G + A+ + + ++ Sbjct: 247 PRYDKSGEEHYNLISALHKALRGSDPHGALYWLARMIQGGEDPRYIARRMVR 298 >gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] Length = 438 Score = 36.1 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 39/258 (15%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 IFYG G K I+ T F + + +S ++ KK Sbjct: 55 LIFYGP-PGTGK---TTLAKVIANTTSADFKQINATVAGKKDMEDVVKAAKDSLGMYGKK 110 Query: 84 KIILIENLST-EKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTSVL 138 I+ ++ + K D L + +I+I ++ + N+ L + + Sbjct: 111 TILFVDEIHRFNKGQQDYLLPFVE---DGTLILIGATTENPYFEVNSAL------ISRSV 161 Query: 139 AISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191 P +K + LI+ + + I +AK L GD A+ N ++ Sbjct: 162 VFELKPLSKEDICTLIDRAINDKERGMGNYNAVIDGDAKDFLADVADGDARAALNAVELG 221 Query: 192 SSYCL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLA 237 I +T + + I D H I I + A+ Sbjct: 222 ILTTERSGDGKIHLTLEVASECIQKRAVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYL 281 Query: 238 DFFLASKMPSHALLHGFL 255 L + + + Sbjct: 282 ARMLYAGESVTFIARRIM 299 >gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 441 Score = 36.1 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 73/257 (28%), Gaps = 37/257 (14%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83 I YG + + T F + + S KK Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVNDIKKIIEEAKIEFSQTGKK 110 Query: 84 KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139 I+ I+ + K+ + ++ II+I + E ++++ Sbjct: 111 TILFIDEIHRFNKLQQ--DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162 Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192 +P + ++ +IE + L I +AK+++ GGD + N L+ + Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIDDDAKKLIAKLSGGDARVALNILEAVV 222 Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238 Y + +I K + D I I + A+ Sbjct: 223 YSSSAQDDGKIYISQKSVINLSSRKTVNYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282 Query: 239 FFLASKMPSHALLHGFL 255 L S + + Sbjct: 283 KMLDSGEDIKFIARRLI 299 >gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC 25840] gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A [Brucella ovis ATCC 25840] Length = 602 Score = 36.1 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGADSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322 + E ++S ++ ++ E + ++ R W ++ + + ++D + Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361 Query: 323 KKYLEKNIIFQTILYIAQTACKN 345 + L + L A + Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384 >gi|163782754|ref|ZP_02177750.1| mating pair stabilization and pilus assembly protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881875|gb|EDP75383.1| mating pair stabilization and pilus assembly protein [Hydrogenivirga sp. 128-5-R1-1] Length = 1292 Score = 36.1 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261 T+Q+ ++I+ + L+++ + + G + A A +++ L ++ Q L Sbjct: 880 TKQNSREIVAEAAHLFLQSVADDLFGGDVRKATEWAIDVISNPRTVQGRLESVNKQIQQL 939 Query: 262 EKIHIIKECSNISFEK 277 + + E +++S ++ Sbjct: 940 QSL---VESNDLSEDE 952 >gi|169236316|ref|YP_001689516.1| replication factor C large subunit [Halobacterium salinarum R1] gi|42559531|sp|Q9HPI4|RFCL_HALSA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|226739138|sp|B0R601|RFCL_HALS3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|167727382|emb|CAP14170.1| replication factor C large subunit [Halobacterium salinarum R1] Length = 471 Score = 36.1 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 83 KKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTS 136 +K++L++ ++ + ++ I++ +NE + +++LR Sbjct: 99 RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQ--PIVLVANEYYEMSSSLRSAC----- 151 Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196 I +K ++ ++ + + ++A + GD ++ N+LQ L Sbjct: 152 -REIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQAL---AE 207 Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237 +D +T V D + + + A+ A Sbjct: 208 QDRTLTADDVVMGERDRTEGVFDYLDDVIATHSAREALQAA 248 >gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC 29328] Length = 537 Score = 36.1 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 71/179 (39%), Gaps = 10/179 (5%) Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158 L +I+ + + + I+ + EI K T+ +++ + N + D I+ L Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NSKDISDNIKYIL 189 Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218 + + +A +++ G + + L ++ +E IT+Q + DI+ I Sbjct: 190 NDLNRKMDDDAIELIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247 Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277 +++N+ I+ + + + ++ P ++ L F+ L E + + Sbjct: 248 FKLVNSIIKKDATDVLGNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLEKIRQNNTQ 305 >gi|148272079|ref|YP_001221640.1| DNA polymerase III subunits gamma and tau [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830009|emb|CAN00937.1| DNA polymerase III gamma and tau subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 826 Score = 36.1 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 13/135 (9%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDII 210 D +E ++ +++ GG + + L +L ED + + ++ Sbjct: 186 DYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQLI--AGSEDESVEYERAVALL 243 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIHIIK 268 TH ++E+I+A + A D + + ++F LLE++ + Sbjct: 244 GYTHAALLDEVIDAVARHDAAGAFAGVDRVIQTGQDP--------RRFVEDLLERLRDLI 295 Query: 269 ECSNISFEKIIQKTE 283 S E Sbjct: 296 IVGATSVEGAAAVLR 310 >gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684] gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684] Length = 427 Score = 36.1 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 11/100 (11%) Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII----------CD 212 S+ +A ++L A GGD + L+ L+ + +T +H +D + D Sbjct: 191 VSVDDDALELLAARSGGDARTALAALE-LACDTAPESKVTLEHAEDALQRRILHYDRASD 249 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 H I I AT ++ L + Sbjct: 250 HHYDTISAWIKATRGSDPDASLYYLAVMLEGGEDPRFIAR 289 >gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens FZB42] gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42] Length = 422 Score = 36.1 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 53/194 (27%), Gaps = 25/194 (12%) Query: 148 IHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----L 200 L + + L S+ +A GGD ++ N L+ E Sbjct: 156 QALERALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIR 215 Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 IT + ++ + D H + + A+ + + Sbjct: 216 ITRETAEECLQKKSYTHDKNGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD----- 270 Query: 251 LHGFLQKFQLLEK--IHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVR 307 L ++ ++ I + + IQ E+ P R + + + Sbjct: 271 LESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAVIELCLSPKSN 330 Query: 308 ETLHKIDHRIHLAR 321 + +D + R Sbjct: 331 SAISAVDEALKDIR 344 >gi|29840175|ref|NP_829281.1| hypothetical protein CCA00413 [Chlamydophila caviae GPIC] gi|29834523|gb|AAP05159.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 311 Score = 36.1 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 21/233 (9%) Query: 76 STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135 S LF+ K++I I + +N H+I+ K + + + ++ + Sbjct: 63 SYGLFASKEVISIFQAEKLSQQTRDFLIRYARNPRPHLIVFLFT--TKQSCFQSLRKELS 120 Query: 136 SVLAISCY----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQK 190 S +S + D + + L+ + + + S + G+ E K Sbjct: 121 SAAFLSLFGEWQSDREKRMTVLLSQRAALLGVTCSLALASAFIKKFPLGEMHNLIGEFHK 180 Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 L + + ++ + + + ++ +A +Q + L L Sbjct: 181 LLCCIGKKQALEYSDIESFVVKKEQVSLWKLRDAILQRNTAESQALLRALLLEHGEDPLG 240 Query: 251 LHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMK--RNILQESLRI 300 L FL+ Q L + + KE ++ K+ + + L ++L Sbjct: 241 LIAFLR-GQCLYGLRSLEKETAD----------RKHRFFIAYGKERLHQALSH 282 >gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. ORS278] gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. ORS278] Length = 615 Score = 36.1 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 LM + +I EA I+ G S + L + + Sbjct: 203 EADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAI--AHSAGEVRADD 260 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ + G I A +L + + ++ Sbjct: 261 VRQMLGLADRTRVIDLFHYLASGDIAAAFKEFREQYDVGADPVVVLSDLAEFVNFVTRVK 320 Query: 266 IIKECSNISFEKIIQKTE 283 ++ ++ ++ Sbjct: 321 VVPATADNVAFSETERLR 338 >gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138] gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata] Length = 331 Score = 36.1 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 38/269 (14%) Query: 24 FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSL 79 +FYG G ++ K Y + ++ LNA + I + + ++ + Sbjct: 45 LLFYGPPGTGKTSTIVALAKDIYGKNYSN--MVLELNASDDRGIDVVRNQIKDFASTRQI 102 Query: 80 FS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 FS K+I+++ L II K N I L + K T Sbjct: 103 FSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCI----------LANYSHKITPA 152 Query: 138 LAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR-------IASR 185 L C P + + L+ IS AK+ LL GD AS+ Sbjct: 153 LLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRISPAAKEALLELSNGDMRRVLNVLQASK 212 Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 L+ + IT++ + + I+ I+ + ++ A +S Sbjct: 213 ATLE------SPEDEITDEVIYECCGAPRPQDIQTILKSILEDDWSTAYDTLTRIRSSN- 265 Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNIS 274 AL+ ++LE+ + KE + IS Sbjct: 266 -GLALIDLIESIVKILEEYKLKKEETRIS 293 >gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Coprococcus catus GD/7] Length = 444 Score = 36.1 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 21/130 (16%) Query: 147 KIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY----C 195 + LI + + IS +A L GGD + N ++ Sbjct: 170 AEDIGVLIRRAVYDTERGMGSYGAEISDDAVDFLADMSGGDARMALNAVELGVLTTEPSA 229 Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245 I IT + I D H I I + AI L + Sbjct: 230 DGKIHITVDVASECIQRRVMRYDKNGDNHYDTISAFIKSMRGSDPDAAIYYLARMLYAGE 289 Query: 246 PSHALLHGFL 255 + + Sbjct: 290 EPAFIARRIM 299 >gi|86608779|ref|YP_477541.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a(2-13)] Length = 779 Score = 36.1 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207 ++ + + I+ EA Q++ G + L +LS + IT + V Sbjct: 185 DDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLL---EGSITPEAVW 241 Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267 D++ + +++A + + + L ALL + ++ L + Sbjct: 242 DLVGGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTA 301 >gi|297625597|ref|YP_003687360.1| hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921362|emb|CBL55915.1| Hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1134 Score = 36.1 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 12/203 (5%) Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209 L D +E+ + + +++ G S + L +L D ++ Q + Sbjct: 271 LTDYLEKICVEEHVQVEPGVLPLVVRAGAGSVRDSLSVLDQLLGSAGADG-VSYQQATSL 329 Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + T ++E+++A G D + L Q L + I+ + Sbjct: 330 LGYTPDALLDEMVDALAAGDGKGVFGTIDKVIEIGQDPRRFAEDLL---QRLRDLVIVAD 386 Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE-- 327 + +I + + + + I + R Sbjct: 387 VPDALSSGLIDVAA-----DQAQRFEHQAALIGPGELTRAAEVIASGLTHMRGTTAPRLH 441 Query: 328 -KNIIFQTILYIAQTACKNNNFY 349 + + + +L A + + Sbjct: 442 LELMCARILLPGADVDGRGTHAR 464 >gi|296270023|ref|YP_003652655.1| AAA ATPase central domain-containing protein [Thermobispora bispora DSM 43833] gi|296092810|gb|ADG88762.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833] Length = 436 Score = 36.1 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 15/120 (12%) Query: 145 DNKIH-LMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202 D L + + + ++ EA + L+ GGD S L+ + + IT Sbjct: 173 DEIRTVLERAVADERGLAGRVTLRPEALEQLIRLAGGDARRSLTYLEAAALLAED---IT 229 Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 V+ + D H + I + + A+ + + + Sbjct: 230 VDVVERAVDKAAVRYDRQGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDPRFIAR 289 >gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica] Length = 350 Score = 36.1 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213 I IS+ A + L++ GD + N LQ S + L + IT V+D+ Sbjct: 200 IRHIREAENVQISENAVEELISVAAGDMRRAVNFLQ--SLHRLHEDEITPDDVRDVAILC 257 Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255 I+E+I N + L P+ +H Sbjct: 258 PAEKIDEVIREARSKSYENMLTKVQALLQDGYPAGQFMHQLQ 299 >gi|229820501|ref|YP_002882027.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333] gi|229566414|gb|ACQ80265.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333] Length = 484 Score = 36.1 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 17/126 (13%) Query: 144 PDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCL------ 196 D + +++ + ++ +A+ LL GGD + L+ + Sbjct: 181 ADVARLVDRALDDERGLAGRYTLDDDARAHLLRLAGGDARKALTILEAAAGTAALPGAGD 240 Query: 197 EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246 + I + V+ + D H I + + A+ +A+ Sbjct: 241 DARGIDLEAVERAVDVAAVRYDRDGDQHYDVTSAFIKSMRGSDVDAALHYLARMVAAGED 300 Query: 247 SHALLH 252 + Sbjct: 301 PRFIAR 306 >gi|329942761|ref|ZP_08291540.1| DNA polymerase III, delta subunit [Chlamydophila psittaci Cal10] gi|332287357|ref|YP_004422258.1| DNA polymerase III subunit delta [Chlamydophila psittaci 6BC] gi|325506794|gb|ADZ18432.1| DNA polymerase III subunit delta [Chlamydophila psittaci 6BC] gi|328815021|gb|EGF85010.1| DNA polymerase III, delta subunit [Chlamydophila psittaci Cal10] gi|328914601|gb|AEB55434.1| conserved hypothetical protein [Chlamydophila psittaci 6BC] Length = 311 Score = 36.1 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 61/193 (31%), Gaps = 22/193 (11%) Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQKLSSYCLEDILITE 203 D + + L+ + + S S + + + E KL ++ Sbjct: 134 DMEKRMATLLSQKASLLGISCSLALASVFIKKFPQAEMHTLLGEFHKLLCCLGGKQVLEY 193 Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263 +++ + + + ++ +A +Q + + L L FL+ Q L Sbjct: 194 NDIENFVVKQEQVSLWKLRDAVLQRNTSASQAMLQALLHEHGEEPLGLIAFLR-GQCLYG 252 Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 + ++E + K+ + + K + + L + + + K Sbjct: 253 LRSLEEETGD---------RKHRFFI----------AYGKERLHQALSYLFYAESII-KN 292 Query: 324 KYLEKNIIFQTIL 336 + I +T+L Sbjct: 293 NTQDPIIAMETLL 305 >gi|289450158|ref|YP_003475319.1| DNA polymerase III subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184705|gb|ADC91130.1| DNA polymerase III, subunit gamma and tau [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 612 Score = 36.1 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 24/214 (11%) Query: 65 KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123 NI +E+ K K+ +I+ + + L + + + + + I+ Sbjct: 102 DNIRRICDEVAFAPTTCKYKVYIIDEVHMLSVGAFNALLKTLEEPPEHIVFIL------- 154 Query: 124 NNTLRKIAEKFTSVLAI--SCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLAN 176 + I C + L + A + L Sbjct: 155 -----ATTDPQRIPATILSRCQRYDLRALSLTEIASRLRLIATENDIKADDSAIEALAGL 209 Query: 177 LGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 G A R+ + L + V ++ + + + G I Sbjct: 210 AKG---AMRDAISLLDQCRVSFSTTFSRDDVFRLVGRSGDAETAMLTDRLFAGDPAGMIK 266 Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269 + D ++S + + G L ++ + I E Sbjct: 267 ILDEMVSSGNEINRITQGLLMHWRNIMLCQIKAE 300 >gi|207725134|ref|YP_002255531.1| hypothetical protein RSMK03520 [Ralstonia solanacearum MolK2] gi|206590366|emb|CAQ37327.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 445 Score = 36.1 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182 +R A A+ + L L +E + +I ++A L +LG D Sbjct: 324 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 383 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213 +R E+ +L S H+ + + Sbjct: 384 QARREVLRLISMLAPQSSFVATHLSQALGHS 414 >gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1] gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1] gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1] gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1] Length = 602 Score = 36.1 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 10/126 (7%), Positives = 35/126 (27%), Gaps = 2/126 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 L + + + + ++ G S + + +T + Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ I ++ ++G + A+ +L L+ ++ Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307 Query: 266 IIKECS 271 + + Sbjct: 308 FTPDVA 313 >gi|154508869|ref|ZP_02044511.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC 17982] gi|153798503|gb|EDN80923.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC 17982] Length = 447 Score = 36.1 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 21/128 (16%) Query: 146 NKIHLMDLIEESLL-----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---- 196 + + LI +L G+ SI+ EA L+ G D +R L L + Sbjct: 179 DSDAIEGLIRRALADERGLAGRFSITDEAVAGLVRLAGSD---ARKSLTLLEAAAGVASD 235 Query: 197 -EDILITEQHVKDIIC--------DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 IT V+ D H I + + ++ + + Sbjct: 236 DGSGEITVASVEAAANQALVRWSKDQHYDVASAFIKSMRGSDVDASLHYLARMIEAGEDP 295 Query: 248 HALLHGFL 255 + + Sbjct: 296 RFIARRIM 303 >gi|134111509|ref|XP_775589.1| hypothetical protein CNBE0090 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258250|gb|EAL20942.1| hypothetical protein CNBE0090 [Cryptococcus neoformans var. neoformans B-3501A] Length = 2076 Score = 36.1 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%) Query: 164 SISKEAKQILLANLGGDR-----------IASRNELQKLSSYCLEDILITEQHVKDIICD 212 + EA+ +L G +R +A+ NEL K+ L ITE H + I+ D Sbjct: 1391 GVDAEAEYVLRRLGGKNRETDVAIAKGNFLAAWNELLKVGLTLLFARHITEDHQEAILFD 1450 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 + E + A + G+I A + D S + L G LQKF+ + + E Sbjct: 1451 -----LLEGLLARLDGEIDLAPGVEDLLCESSLVVMTTLVGVLQKFEGVN---LPVEQLG 1502 Query: 273 ISFEKIIQKTEKN 285 K++ + Sbjct: 1503 AVLAKVVDAATRP 1515 >gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462] Length = 305 Score = 36.1 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%) Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199 + I+ +L + ++ EA+ L GD A+ N EL LS+ D Sbjct: 180 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 239 Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244 I I DT+ +II+A + A+ +A Sbjct: 240 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 296 >gi|293192677|ref|ZP_06609631.1| ATPase, AAA family [Actinomyces odontolyticus F0309] gi|292820184|gb|EFF79181.1| ATPase, AAA family [Actinomyces odontolyticus F0309] Length = 447 Score = 36.1 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 21/128 (16%) Query: 146 NKIHLMDLIEESLL-----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---- 196 + + LI +L + SI+ EA L+ G D +R L L + Sbjct: 179 DSDAIEGLIRRALADERGLARRFSITDEAVAGLVRLAGSD---ARKSLTLLEAAAGVASD 235 Query: 197 -EDILITEQHVKDIIC--------DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247 IT V+ D H I + + ++ + + Sbjct: 236 DGSGEITVASVEAAANQALVRWSKDQHYDVASAFIKSMRGSDVDASLHYLARMIEAGEDP 295 Query: 248 HALLHGFL 255 + + Sbjct: 296 RFIARRIM 303 >gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative [Dehalococcoides ethenogenes 195] Length = 559 Score = 36.1 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 62/165 (37%), Gaps = 18/165 (10%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + +E+ +I EA +++ + GG N LQ+++ I+ V+ Sbjct: 183 DMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIA--TTYGTEISLPQVQA 240 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL--LEKIHI 266 + + I+ + ++ I N + + +A + L++F+ L+ + Sbjct: 241 ALGISGDERIKTLAENILKKDIKNGLQTLNAVVADGID--------LKQFRRELLDYLRQ 292 Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311 I ++ + + + ++ LQ+ I N + + + Sbjct: 293 IMLLNSGAEGSLELTAD------EKKALQKVSAITNLEGITKAIK 331 >gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] gi|326197615|gb|EGD54803.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] Length = 790 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 1/136 (0%) Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211 L+E ++ E +++ GG S + L +L + ++ +T ++ Sbjct: 184 GLLEGICAKEHVVVAPEVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYDRALSLLG 242 Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271 T I+ ++A G + + + + L +F+ L + + + + Sbjct: 243 VTDSALIDAAVDALGAGDGSALFNVVERVVDAGHDPRRFAIDLLDRFRDLILVQAVPDAT 302 Query: 272 NISFEKIIQKTEKNII 287 + ++ Sbjct: 303 ERGLVEAPDDQLASMH 318 >gi|167856184|ref|ZP_02478922.1| glycogen phosphorylase [Haemophilus parasuis 29755] gi|167852706|gb|EDS23982.1| glycogen phosphorylase [Haemophilus parasuis 29755] Length = 837 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 E + I+ + S+E+ T K ++ E+L W +V L + I Sbjct: 332 ELMRILIDEKGYSWEQAWNTTRKVFFYTNHTLMSEALETWPVEMVARILPRHLQIIFE 389 >gi|58267114|ref|XP_570713.1| structural constituent of nuclear pore [Cryptococcus neoformans var. neoformans JEC21] gi|57226947|gb|AAW43406.1| structural constituent of nuclear pore, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 2076 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%) Query: 164 SISKEAKQILLANLGGDR-----------IASRNELQKLSSYCLEDILITEQHVKDIICD 212 + EA+ +L G +R +A+ NEL K+ L ITE H + I+ D Sbjct: 1391 GVDAEAEYVLRRLGGKNRETDVAIAKGNFLAAWNELLKVGLTLLFARHITEDHQEAILFD 1450 Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272 + E + A + G+I A + D S + L G LQKF+ + + E Sbjct: 1451 -----LLEGLLARLDGEIDLAPGVEDLLCESSLVVMTTLVGVLQKFEGVN---LPVEQLG 1502 Query: 273 ISFEKIIQKTEKN 285 K++ + Sbjct: 1503 AVLAKVVDAATRP 1515 >gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 607 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L +A +++ G + + L +L S+ E + + ++ Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +E+++ A + G A+ LA + + +L+ Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283 >gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC 27126] Length = 435 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%) Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198 L +LI+ +L I + A+ L+ GGD L+ + + + Sbjct: 161 EHEALSELIDRALSDTEKGLGDRALGIKETARNALIDLSGGDARRLLTYLELAADFTGAN 220 Query: 199 ILITEQHVKDIIC------DTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMPSH 248 IT V+ + D ++I+A A+ L + Sbjct: 221 -EITVSDVEHAVGEKVASYDNKGDTFYDLISAFHKSVRGSDPDAALYWYARILDGGGDAL 279 Query: 249 ALLHGFL 255 + L Sbjct: 280 YVGRRLL 286 >gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338] Length = 453 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 14/128 (10%) Query: 144 PDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDI 199 D+ L+ + +E L G + EA+ L++ GGD R + E S+ Sbjct: 181 EDDIRELVRRAVADERGLGGALELEPEAEAHLVSLAGGDARRALTALEAAAESAASTGSD 240 Query: 200 LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249 I V+ + D H + I + + A+ + + Sbjct: 241 KIDLTTVEATVDRAAVLYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRF 300 Query: 250 LLHGFLQK 257 + + Sbjct: 301 IARRLVVH 308 >gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 607 Score = 36.1 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L +A +++ G + + L +L S+ E + + ++ Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +E+++ A + G A+ LA + + +L+ Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283 >gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a] Length = 353 Score = 36.1 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 32/180 (17%) Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVL--AISCY-------------------- 143 II+ +++ + + + LR+ E ++ V + C Sbjct: 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKA 191 Query: 144 PDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDR---IASRNELQKLSSYCLED 198 D + L I E + +L GD I K + Y + Sbjct: 192 LDASNAIDRLRFISEQ---ENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDG 248 Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258 IT V+++ + EI+ G + F+ S + ++++ + + Sbjct: 249 KNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHEYY 308 >gi|302537987|ref|ZP_07290329.1| predicted protein [Streptomyces sp. C] gi|302446882|gb|EFL18698.1| predicted protein [Streptomyces sp. C] Length = 423 Score = 36.1 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 19/152 (12%) Query: 195 CLEDILITEQHV----KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250 C +D L+T V + + +I A + G + + A Sbjct: 213 CTDDRLLTCTDVPVDTMRAVVRASGASLNDIYLAALAGAVRTWL-----------SPGAC 261 Query: 251 LHGFLQKFQLLEKIHIIKE--CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 + ++ ++ + + +++ ++ + + E R W ++ +R Sbjct: 262 QQPVPVRVPFNVRLRTERQDRGNRMGHARLLLPVDEPSAGQRLERMVEQTRFWPRDQIRR 321 Query: 309 TLHKIDHRIHLARKKKYL--EKNIIFQTILYI 338 L + H + L + T+L I Sbjct: 322 ILDRAPHHMLWQHIAPSLSPGDALASATLLGI 353 >gi|294054461|ref|YP_003548119.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] gi|293613794|gb|ADE53949.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita akajimensis DSM 45221] Length = 376 Score = 36.1 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 2/100 (2%) Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219 + A + + G S++ L ++ S+C I E V D+ I Sbjct: 195 AEGIQVEDAALESIARLANGGMRDSQSILDQMISFCGN--EINEGDVLDVYGLVSAERIA 252 Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 + A + + D F +L + Sbjct: 253 GLAKALGSLDYPAILEMVDRFANEGRDLFRVLLDLQAHIR 292 >gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis 50-1 BON] gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON] Length = 444 Score = 36.1 bits (82), Expect = 9.2, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 35/253 (13%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI-NSTSLFSK 82 IFYG G + I+ T F + + ++ +E ++ + Sbjct: 55 VIFYGP-PGTGK---TTLARVIANTTKSHFEQLSAVTAGV-ADVRRLIDEAKQRLGMYGQ 109 Query: 83 KKIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133 + I+ I+ N + + +L +E +I N + S + ++ K Sbjct: 110 RTILFIDEIHRFNKAQQDALLPHVEAGTIILIGATTENPYFEVNSALLSRSTVFELYPLK 169 Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193 + I K L D + L I+ +A ++ GD + N L+ Sbjct: 170 EKHLKEIL-----KRALADK-DRGLGNYAIEITDDAIDHIVNMADGDARSVLNALEIAFL 223 Query: 194 YCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADF 239 I ++ I D H I I + A+ Sbjct: 224 TTPPSDDGIIHIDLGVAEECIQRRALRYDKAGDNHYDTISAFIKSMRGSDPNAAVYWLAK 283 Query: 240 FLASKMPSHALLH 252 + + + Sbjct: 284 MINAGEDPKFIAR 296 >gi|207742531|ref|YP_002258923.1| hypothetical protein RSIPO_00719 [Ralstonia solanacearum IPO1609] gi|206593923|emb|CAQ60850.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 445 Score = 36.1 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182 +R A A+ + L L +E + +I ++A L +LG D Sbjct: 324 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 383 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213 +R E+ +L S H+ + + Sbjct: 384 QARREVLRLISMLAPQSSFVATHLSQALGHS 414 >gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM 14863] gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM 14863] Length = 438 Score = 36.1 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 14/111 (12%) Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LEDILITEQHVKDII--- 210 L +++ EA + L+ GGD A+ N L+ +T + ++ + Sbjct: 188 LGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETAEEALLKR 247 Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 D H +I + A+ L + + Sbjct: 248 AVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRL 298 >gi|83749070|ref|ZP_00946076.1| Hypothetical Protein RRSL_01467 [Ralstonia solanacearum UW551] gi|83724260|gb|EAP71432.1| Hypothetical Protein RRSL_01467 [Ralstonia solanacearum UW551] Length = 441 Score = 36.1 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%) Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182 +R A A+ + L L +E + +I ++A L +LG D Sbjct: 320 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 379 Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213 +R E+ +L S H+ + + Sbjct: 380 QARREVLRLISMLAPQSSFVATHLSQALGHS 410 >gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 607 Score = 36.1 bits (82), Expect = 9.4, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216 L +A +++ G + + L +L S+ E + + ++ Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247 Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252 +E+++ A + G A+ LA + + +L+ Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283 >gi|219870872|ref|YP_002475247.1| glycogen phosphorylase [Haemophilus parasuis SH0165] gi|219691076|gb|ACL32299.1| glycogen phosphorylase [Haemophilus parasuis SH0165] Length = 837 Score = 36.1 bits (82), Expect = 9.4, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 E + I+ + S+E+ T K ++ E+L W +V L + I Sbjct: 332 ELMRILIDEKGYSWEQAWNTTRKVFFYTNHTLMSEALETWPVEMVARILPRHLQIIFE 389 >gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 483 Score = 35.7 bits (81), Expect = 9.5, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 81/234 (34%), Gaps = 22/234 (9%) Query: 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW---NEINSTSLF 80 + YG L + F ++ LNA + + S S+ Sbjct: 42 ILLYGPPGVGKTTLAYALANDYG------FDVIELNASDRRSREEIRRIIGQSAVSKSIL 95 Query: 81 SKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137 + II+++ + + K+ + E+I + II+ +N+ + L+ + V Sbjct: 96 GNRFIIVLDEVDGISGKEDAGGVGELIKIAKESKNPIIMTAND-AYSPNLKNLL---PHV 151 Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 I P + +++ + + +++ ++ GD ++ N+LQ L+ Sbjct: 152 ELIELKPLKVNEIYKILKAIAEKEGLDVDDKVLKVIASHSAGDLRSAINDLQALAL---- 207 Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251 +T + V+ + I + + + K N + + ++ Sbjct: 208 SGDLTIEAVESLPERNREKNIFDALRIIL--KTTNYKVATTALIDVDETPDVII 259 >gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 558 Score = 35.7 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 96 KVLDCLEEIIIKNICNHIIIIKSNEIKK-----NNTLRKIAEKFTSVLAISCYPDNKIHL 150 + L + + + N + I+ + E+ K + +++ K AI C HL Sbjct: 133 GAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQAAI-C-----EHL 186 Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210 +++ + EA ++ G + + L + + D +T ++I Sbjct: 187 AAILD----KEGIAYETEALHLIARRAEGGMRDALSILDQ-ALSLSFDNRVTLAIAEEIT 241 Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270 + +++ + I+ K A+ + S L F+ L + + Sbjct: 242 GSISISALDDYVQHLIRQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLLIVKSGGDH 301 Query: 271 SNISF 275 S Sbjct: 302 HRQSP 306 >gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis 89/1591] Length = 555 Score = 35.7 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 1/111 (0%) Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208 + + + L ++A I+ G + + L + + +D +T + ++ Sbjct: 181 DIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQ-ALSLSQDQQVTLEIAEE 239 Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 I + +++ + + QG A+ L + Sbjct: 240 ITGSISLRALDDYVASLRQGDSVTALQHLQTLFGQGKSMSRFATDLLHYLR 290 >gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC 33269] Length = 597 Score = 35.7 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 33/306 (10%), Positives = 107/306 (34%), Gaps = 36/306 (11%) Query: 53 FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109 +++ L+A +NI + K K+ +I+ + + + + + Sbjct: 90 YNIFELDAASNNSVENIKALMEQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPP 149 Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162 + I I+ EK + I Y ++ + +++ Sbjct: 150 AHVIFIL------------ATTEKHKILPTIISRCQIYDFERMSVQGIVDHLKMVADKEG 197 Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222 + +A I+ G + + + +S+C IT + V + + I+ Sbjct: 198 ITYEDQALSIIAEKADGGMRDALSIFDQAASFC--QGNITYKKVIEDLNVLDAENYFNIV 255 Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282 + ++Q K+ ++L + ++ L++G + + + K+ + ++ ++ Sbjct: 256 DLSLQNKVAEIMVLLNSIISKGFDGGHLINGLAAHIRNVL---MAKDEQTLPLLEVSRQ- 311 Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 + +++++ + L ++ R+ ++ ++ T++ +AQ Sbjct: 312 ------QRDKFREQAVKA-PTAFLYNALKILNQCDINYRQSSN-KRLLVELTLIQVAQLT 363 Query: 343 CKNNNF 348 ++ Sbjct: 364 QSEDDA 369 >gi|154250711|ref|YP_001411535.1| DNA polymerase III subunits gamma and tau [Parvibaculum lavamentivorans DS-1] gi|154154661|gb|ABS61878.1| DNA polymerase III, subunits gamma and tau [Parvibaculum lavamentivorans DS-1] Length = 623 Score = 35.7 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 10/89 (11%), Positives = 32/89 (35%) Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 + + E V+D++ + ++ + ++G I A+ +L Sbjct: 275 SHGENGVLESDVRDMLGLADRARVFDLFDLLMKGDIGGALTELRAQYDVGADPVVVLSDL 334 Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE 283 + L ++ +++ S+ ++T Sbjct: 335 AELTHWLTRLKLVEGASDDVAMSETERTR 363 >gi|329937414|ref|ZP_08286972.1| hypothetical protein SGM_2464 [Streptomyces griseoaurantiacus M045] gi|329303290|gb|EGG47177.1| hypothetical protein SGM_2464 [Streptomyces griseoaurantiacus M045] Length = 171 Score = 35.7 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 2/93 (2%) Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-HALLH 252 + E+ + V++ T + + ++ + G + D +LAS + Sbjct: 74 FRGEERTLLLVDVREEPGRTFRAAVPDAFDSAL-GNLAIDNQTFDDYLASGSLGEDGVYR 132 Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 + Q L + + ++ Sbjct: 133 LHERHRQALAALRGAADPQGAPAFASVRGRVPG 165 >gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp. BTAi1] gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits) [Bradyrhizobium sp. BTAi1] Length = 613 Score = 35.7 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 2/138 (1%) Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 LM + +I EA I+ G S + L + + Sbjct: 203 EADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAI--AHSAGEVRADD 260 Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265 V+ ++ + ++ + G I A +L + + ++ Sbjct: 261 VRQMLGLADRTRVIDLFHHLASGDIAAAFKEFREQYDVGADPVVVLSDLAEFVNFVTRVK 320 Query: 266 IIKECSNISFEKIIQKTE 283 ++ ++ ++ Sbjct: 321 VVPATADNVAFSETERLR 338 >gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1] gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1] Length = 395 Score = 35.7 bits (81), Expect = 10.0, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 13/118 (11%) Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206 L+ L++++L +AK+ L+A+ GGD +R L+ L D IT + Sbjct: 151 NEALLSLLDKALKYADLDCETDAKEYLIASSGGD---ARAMLKLLEFASSIDTTITMHLL 207 Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 K + + E I + AI + + + Sbjct: 208 KSLRPNALSAGSSEAGVHYDLASALIKSIRGSDADAAIYYLARLIDGGESADFIARRL 265 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.143 0.376 Lambda K H 0.267 0.0436 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,738,231,660 Number of Sequences: 14124377 Number of extensions: 214260780 Number of successful extensions: 804825 Number of sequences better than 10.0: 3520 Number of HSP's better than 10.0 without gapping: 1617 Number of HSP's successfully gapped in prelim test: 2431 Number of HSP's that attempted gapping in prelim test: 799622 Number of HSP's gapped (non-prelim): 4605 length of query: 352 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 212 effective length of database: 2,865,380,850 effective search space: 607460740200 effective search space used: 607460740200 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 82 (36.1 bits)