BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040481|gb|ACT57277.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA
Sbjct: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
           LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE
Sbjct: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD
Sbjct: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF
Sbjct: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI
Sbjct: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
           WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT
Sbjct: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352


>gi|222087924|ref|YP_002546462.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84]
 gi|221725372|gb|ACM28528.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84]
          Length = 345

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 193/357 (54%), Gaps = 24/357 (6%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M+ I+SH+F   +Q + +N    + +F+ YG D+GL+ E   Q      +   DPFSL+ 
Sbjct: 1   MSEIKSHEFDGFLQNAARN----YRLFVIYGPDRGLVSERAGQVAGKTGVDLKDPFSLIK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN-HIIII 116
           L+  ++Q +     +E+N+  LF  +K++ I   + EK ++D L+ II  N  N   +II
Sbjct: 57  LDVGDLQNDAGRLLDEVNAIGLFGGEKLVWIRGAANEKALIDSLQ-IIADNPPNASFVII 115

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           ++ ++KK + LRK+AE    +  + CY D+   L  LI+  L      IS  A+Q+LL  
Sbjct: 116 EAGDLKKGSGLRKVAEASRKIATVPCYADDGRALNSLIDTELASENLRISPAARQMLLEL 175

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           LGGDRIASRNE++KL+ YC  +  I E HV DII D   +  ++ ++A ++G        
Sbjct: 176 LGGDRIASRNEVRKLALYCRGEGTIEEGHVADIIGDASAISADDAVDAILKGD------- 228

Query: 237 ADFFL-------ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           +D FL       ASK     +L G L++FQLL+ +    +   +   +++Q   +++   
Sbjct: 229 SDAFLHAMQKIAASKTSMFLVLQGCLRQFQLLDVMRTEMDEKRVPPAQVMQTLGRHLHFR 288

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA-QTACKN 345
           ++ I++++LR W    +   ++++   I   R++  LE  I  QT+L    Q+A K+
Sbjct: 289 RKPIIEQALRSWTAPAIAREMNRLQSAILQTRQRASLEDTIATQTLLATTLQSARKS 345


>gi|190893974|ref|YP_001980516.1| DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652]
 gi|190699253|gb|ACE93338.1| putative DNA polymerase III protein, delta subunit [Rhizobium etli
           CIAT 652]
          Length = 346

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 186/339 (54%), Gaps = 7/339 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLTEKPLEATYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   +V+ +  Y D+   L  LI+  L   +  I+  A+Q LLA +
Sbjct: 117 AGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALLALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +++Q   +++   ++ IL+++
Sbjct: 237 QKISSSKAAIFLVLQACLKQFQLLDTMRAEMEEKRVQAPQVMQTMGRHLHFRRKPILEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           LR W+ + +    +++   I  +R+++ LE +I  QT+L
Sbjct: 297 LRQWSADSIARESNRLQAAILQSRRRQVLEDSIAMQTLL 335


>gi|241206935|ref|YP_002978031.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860825|gb|ACS58492.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 346

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 187/339 (55%), Gaps = 7/339 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKST+N    + +F+ YG D+GL+ E  +Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFESFLQKSTRN----YRIFVIYGPDRGLVSERASQLAGKSGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E+ S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAESARSVMTIPSYADDSRALNGLIDTELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +E+ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVEDAVDAILGGDLNAFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    +   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQTPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           LR W    +    +++   I  +R+++ LE ++  QT+L
Sbjct: 297 LRQWTAESIARECNRLQAAILQSRRRQVLEDSVAMQTLL 335


>gi|86359696|ref|YP_471588.1| DNA polymerase III subunit delta [Rhizobium etli CFN 42]
 gi|86283798|gb|ABC92861.1| putative DNA polymerase III, delta subunit protein [Rhizobium etli
           CFN 42]
          Length = 346

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 189/340 (55%), Gaps = 9/340 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS  N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSAGN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNGLIDAELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCSGLNTVEEHHVSEIIGDASAISVDDAVDAVLSGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDMMRAEMEEKRVQAPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWN-KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           LR W+ +N+ RE+ +++   I  +R+++ LE ++  QT+L
Sbjct: 297 LRHWSAENIARES-NRLQAAILQSRRRQVLEDSVAMQTLL 335


>gi|227823851|ref|YP_002827824.1| DNA polymerase III subunit delta [Sinorhizobium fredii NGR234]
 gi|227342853|gb|ACP27071.1| DNA polymerase III, delta subunit protein [Sinorhizobium fredii
           NGR234]
          Length = 343

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 183/342 (53%), Gaps = 8/342 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M+ ++SH+F   + +   N    + +F+ YG D+GL+ E   Q      +   DPF+LV 
Sbjct: 1   MSEVKSHEFDGFLNRGASN----YRLFLLYGPDRGLVSERAAQLAAGCGVALDDPFALVK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+A E+Q+      +E+N+  LF  +K++ I   ++EK + + L+ +         +II+
Sbjct: 57  LDASELQQ-AGRVLDEVNAIGLFGGEKLVWIRGAASEKAIAEALQILADTPPTGSTLIIE 115

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LRKI E   +V +I+CY D+   L  LI++ L      I   A++ LL  L
Sbjct: 116 AGDLKKGAALRKIGETSRAVASIACYSDDARSLQALIDKELAEAGLRIGPAARERLLEAL 175

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+ASRNEL+KL+ YC    +I E+ V  I+ D   + +++ ++A ++G +   +   
Sbjct: 176 GGDRMASRNELRKLALYCRGKDMIDEEDVLAIVGDASAISVDDAVDAVLKGDVDALLHAM 235

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK P   +L   L++FQ L+ +    + S     +++    + +   ++ I++ +
Sbjct: 236 KKITSSKTPPFLVLQACLRQFQQLDVMRAEMDTSRQPANQVVASLGRGLHFRRKPIVEAA 295

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           L+ W    +R  L ++   I+ +R ++ LE +++ Q +L IA
Sbjct: 296 LKHWTAPAIRRELSRLQATIYQSRARQSLEDSLVLQNLLAIA 337


>gi|209551497|ref|YP_002283414.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537253|gb|ACI57188.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 346

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERAAQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDPLALLAEKPLEAAHLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   S++ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSIMTIPSYADDSRALNTLIDAELSAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           LR W    +    +++   I  +R+++ LE ++  QT+L
Sbjct: 297 LRQWTAEAIARESNRLQAAILQSRRRQVLEDSVAMQTLL 335


>gi|150398392|ref|YP_001328859.1| DNA polymerase III subunit delta [Sinorhizobium medicae WSM419]
 gi|150029907|gb|ABR62024.1| DNA polymerase III, delta subunit [Sinorhizobium medicae WSM419]
          Length = 343

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 182/341 (53%), Gaps = 8/341 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M+ I+SH+F   +Q+S       + +F+ YG D+GL+ E      +   I   DPF++V 
Sbjct: 1   MSEIKSHEFDNFLQRSAAG----YRLFLLYGPDRGLVSERATALAETFGIPLDDPFAVVK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           ++A  +Q    +  +E+N+  LF  +K++ +   STEK ++D L+ +         +I++
Sbjct: 57  MDATGLQ-GAGSLLDEVNAIGLFGGEKLVWMRGASTEKALIDALQFLASDPPVGARLIVE 115

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LRK+ E   SV +I+CY D+   L  LI++ L      IS   ++ L+  L
Sbjct: 116 AGDLKKGAALRKVGESSRSVASIACYSDDARGLQALIDKELSDAGLRISPAGRERLMDAL 175

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+ASRNEL+KL+ YCL   ++ E  V  I+ D   + +++ ++A ++G     +   
Sbjct: 176 GGDRMASRNELRKLALYCLGKDMVDEVDVLGIVGDASAISVDDAVDAVLKGDPDALLHAM 235

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                SK P   +L   L++FQ L+ +    + +     +++    + +   ++ +++ +
Sbjct: 236 KKITTSKTPPFLVLQACLRQFQQLDVMRAEMDANRQPPAQVVATLGRGLHFRRKPVVEAA 295

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           L+ W    +R  L ++   I+ +R ++ LE++++ Q +L I
Sbjct: 296 LKHWTAPAIRRELSRLQSTIYQSRSRQSLEESLVIQNLLAI 336


>gi|15889999|ref|NP_355680.1| DNA polymerase III subunit delta [Agrobacterium tumefaciens str.
           C58]
 gi|15157968|gb|AAK88465.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 345

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 183/331 (55%), Gaps = 3/331 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I+SH+F ++  +N      VF+ YG D+GL+ E      K   I   D F+ + L A
Sbjct: 1   MAEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERAGLIAKKTGIDPDDAFASLKLTA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++Q +     +E+N+  LF  +K++ +++ S EK ++D L+ +         +II++ +
Sbjct: 60  SDLQGDPGRLLDEVNAIGLFGGEKLVWVKSASAEKALVDALQILADTPPEASFLIIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRKIAE   S+ AI CY D+   L  LI++ L      I+  A+Q L+  LGGD
Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSANNLRIAPAARQRLIEQLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA-DF 239
           RIASRNE++KL+ YCL   +I E  +  II D   +  ++ ++A ++G   NA   A   
Sbjct: 180 RIASRNEIRKLALYCLGADVIEEDDILAIIGDASTVSADDAVDAILKGD-RNAFFHATQK 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
            ++SK P   +L G L++FQLL+++    +       +++Q   ++I   ++ I++ +LR
Sbjct: 239 IISSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPIIERALR 298

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
            W    +   ++++   I  +R+++ LE+++
Sbjct: 299 TWQPAAIAREMNRLQAAILQSRQRQSLEESV 329


>gi|116254458|ref|YP_770296.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259106|emb|CAK10217.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 346

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 185/339 (54%), Gaps = 7/339 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E  +       +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERASLLAARSGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E+ S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAASLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNALIDTELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNAFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    +   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQPPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           LR W    +    +++   I  +R+++ LE ++  QT+L
Sbjct: 297 LRQWTAESIARESNRLQAAILQSRRRQVLEDSVAMQTLL 335


>gi|325294120|ref|YP_004279984.1| DNA polymerase III, delta subunit [Agrobacterium sp. H13-3]
 gi|325061973|gb|ADY65664.1| putative DNA polymerase III, delta subunit [Agrobacterium sp.
           H13-3]
          Length = 345

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 182/331 (54%), Gaps = 3/331 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I+SH+F ++  +N      VF+ YG D+GL+ E  N   K   I   D F+ + L+A
Sbjct: 1   MTEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERANLIAKKTGIDPDDAFASLKLSA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++Q +     +E+N+  LF  +K++ I++ S EK ++D L+ +         +II++ +
Sbjct: 60  SDLQGDPGRLLDEVNAIGLFGGEKLVWIKSASAEKALVDALQILAETPPEASFLIIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRKIAE   S+ AI CY D+   L  LI++ L      I+  A+Q L+  LGGD
Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSADNLRIAPAARQRLIEQLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA-DF 239
           RIASRNE++KL+ YC    +I E  V  II D   +  ++ ++A ++G   NA   A   
Sbjct: 180 RIASRNEIRKLALYCRGAEVIEEDDVLAIIGDASTVSADDAVDAILKGD-RNAFFHATQK 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
            ++SK P   +L G L++FQLL+++    +       +++Q   ++I   ++ +++ +LR
Sbjct: 239 IVSSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPVIERALR 298

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
            W    +   ++++   I  +R+++ LE ++
Sbjct: 299 TWQPAAIAREMNRLQAAILQSRQRQSLEDSV 329


>gi|15967086|ref|NP_387439.1| DNA polymerase III subunit delta [Sinorhizobium meliloti 1021]
 gi|307302548|ref|ZP_07582305.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C]
 gi|307316121|ref|ZP_07595565.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83]
 gi|15076359|emb|CAC47912.1| Putative DNA polymerase III, delta subunit [Sinorhizobium meliloti
           1021]
 gi|306897961|gb|EFN28703.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83]
 gi|306903218|gb|EFN33808.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C]
          Length = 343

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 180/341 (52%), Gaps = 8/341 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M+ ++SH+F   +Q+S       + +F+ YG D+GL+ E  ++   +  I   DPF++V 
Sbjct: 1   MSEVKSHEFDSFLQRSAAI----YRLFLLYGPDRGLVSERASELAGSFGIPLDDPFAVVK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+A  +Q    +  +E+N+  LF   K++ +   S EK + + L+ +         +I++
Sbjct: 57  LDAATLQ-GAGSVLDEVNAIGLFGGDKLVWVRGASAEKALTEALQILAADPPAGARLIVE 115

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LRK+ E   SV +I+CY D+   L  L++  L      I   A++ L+  L
Sbjct: 116 AGDLKKGAALRKVGETSRSVASIACYSDDIRGLQALVDTELSEAGLRIGPAARERLVEAL 175

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+ASRNEL+KL+ YC    ++ E  V  I+ D   + +++ ++A ++G     +   
Sbjct: 176 GGDRMASRNELRKLALYCRGKDMVDEDDVLGIVGDASAISVDDAVDAVLKGDADALLHAM 235

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                SK P   +L   L++FQ L+ +    + S  S  +++    + +   ++ +++ +
Sbjct: 236 KKITTSKTPPFLVLQACLRQFQQLDVMRAEMDASRQSAGQVVASLGRGLHFRRKPVVEAA 295

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           L+ W    +R  L ++   I+ +R ++ LE++++ Q +L I
Sbjct: 296 LKHWTGPAIRRELGRLQATIYQSRSRQSLEESLVIQNLLAI 336


>gi|222150241|ref|YP_002551198.1| DNA polymerase III subunit delta [Agrobacterium vitis S4]
 gi|221737223|gb|ACM38186.1| DNA polymerase III, delta subunit [Agrobacterium vitis S4]
          Length = 347

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHF-VFIFYGSDKGLIFELINQFKKNISITYHDPFSLV 56
           M  ++SH+F   +QKS +     H+ +F+ YG D GL+ E      K+  +   DPFS++
Sbjct: 1   MVEVKSHEFDGFLQKSVR-----HYKMFLVYGPDVGLVAERAAALAKSTGVALDDPFSVI 55

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116
            L++ ++Q +     +E+N+  LF   +++ I  ++ EK V+D L+ +      +  +I+
Sbjct: 56  RLDSGDLQSDPGKLLDEMNALGLFGGDRLVWIRGIANEKSVVDGLQILAKDPPDSSCLIL 115

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           ++ ++KK +  RKIAE   ++  I CY D+   +  LI+       K ++  A+ +L  +
Sbjct: 116 EAGDLKKGSATRKIAEPARNIAVIPCYQDDARAINALIDAEFSAAVKRLTPAARSLLSES 175

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           LGGDR ASRNE+ KL  YCL D L+ E HV+ II D   +  +E ++A + G     +  
Sbjct: 176 LGGDRRASRNEISKLLLYCLHDDLVDETHVEQIIGDASAVSTDEAVDAVLAGNSDALLHA 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                 SK P   +L G L++FQLL+ +    +       +++Q   + +   ++ + ++
Sbjct: 236 VQKIATSKTPMFLVLQGCLRQFQLLDIMRSEMDEKRQQAGQVMQTLGRQVHFKRKPLFEK 295

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           SL+ W  + +   + ++   I  +R++  LE ++  QT+L I
Sbjct: 296 SLKNWPSDALSVEMRRLQAAILASRRQPSLEDSLSLQTLLAI 337


>gi|90421006|ref|ZP_01228910.1| putative DNA polymerase III, delta subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334784|gb|EAS48560.1| putative DNA polymerase III, delta subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 346

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 168/332 (50%), Gaps = 7/332 (2%)

Query: 18  FLSHFVFIF-----YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FLS   F F     YG D GL+ E   +  +   +   DPF+ V L A E++K+I   ++
Sbjct: 12  FLSRPDFSFPVILLYGPDPGLVSERSEKVAELSGVDRSDPFAAVTLAADELEKDIGRLYD 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E  + S+F   ++I +      K + + + E+  K +   I+I+++ ++KK++ LR  AE
Sbjct: 72  EAQTVSMFGGTRLIRVRGAGNGKSLAEAVAELSAKKLDGAIVILEAGDLKKSSALRANAE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +    +A+ CY D    +  +I+E +     +I +EA+  L A LG +RIASR E++KL 
Sbjct: 132 RGKFAIALPCYQDEGRAIDKMIDEEMRESGLTIGREARDELRARLGANRIASRGEIRKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y L    +TE+ V+ I+ D     +EE I+A   G++     L D  +++   +  L  
Sbjct: 192 LYALGTSSVTEEDVRAIVGDVSADTLEETIDAAASGEVRRLPHLIDRLVSAGTATFQLHQ 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L+ FQ L+ +  + E       +++++   +    +++ ++ +L  W  + +   L +
Sbjct: 252 QLLRYFQQLQTMREMVEKGGEPVGRVVERRRPHF--RRKHAMEVALSAWPLDAITTILQR 309

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           ID  I  +RK+  L   I  QT+L +A  A +
Sbjct: 310 IDADILASRKEGGLALTITRQTLLDVAVEAAR 341


>gi|163757460|ref|ZP_02164549.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43]
 gi|162284962|gb|EDQ35244.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43]
          Length = 342

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 163/336 (48%), Gaps = 1/336 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I++H+F     +       + + YG D+GL+ E   Q      +   D FS++ L A
Sbjct: 1   MAQIKNHEFA-GFVRRQGTPFRIVLVYGPDRGLVSERAAQVAAKTGVDLSDDFSVLKLEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++  +     +E  + SLF   +++ I+N   E+ ++D +  +   +     ++I++ +
Sbjct: 60  SDLSGDPGRLADEFGAISLFGGDRLVWIKNAGNERGLVDAVAAVSQSDPGTSHLLIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK  E   + LAI CY D+   +  LI+E L     +I  EA+Q L   LGGD
Sbjct: 120 LKKGAGLRKTIEAAKTALAIPCYADDARGVQALIDEELGGAGLTIQGEARQRLSQLLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL+ YC     +T+  V + I D   L +++ I A   G         +  
Sbjct: 180 RLASRGELKKLALYCHGSGTVTDADVVEAIGDVAALSVDDAIEAVFSGDPGRLEAALERI 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           LASK     +L G + + + L+ +  + E  +    +++    + I   ++ I++ +LR 
Sbjct: 240 LASKTSVFLVLRGCMVQLEQLDGMRSLVEGHSRQPAQVMADKGRGIHFKRKPIVERALRH 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           W    +   ++++   +   RK+  LE +I  Q +L
Sbjct: 300 WTLKAINAEMYRLAQAVLETRKRPQLEASIARQALL 335


>gi|319407833|emb|CBI81486.1| putative DNA polymerase III [Bartonella sp. 1-1C]
          Length = 347

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 181/353 (51%), Gaps = 11/353 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55
           MA  ++H+  Q      FL HF     + + YG D+GL+ E   +F K   +   +PFS 
Sbjct: 1   MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFST 54

Query: 56  VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115
           V L+A EI K+ +   +E  + SLF   ++I I N + +K  L  L+ +I +      I+
Sbjct: 55  VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITELPEASFIL 114

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I++ ++KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  
Sbjct: 115 IEAGDLKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNVTLSLEARQYLHQ 174

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           N+G DR+ASR+EL+KL  Y L+   I  + VK I+ D   L  +E+++A + G + +  +
Sbjct: 175 NIGEDRLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVVDAVLLGDLASFEI 234

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
               + A    S  +L+   + FQ L+ +    E    +   +I + +  I   ++ I++
Sbjct: 235 YFSRYCAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFTVISQAQPPIFFQRKKIIE 294

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
           ++LR WN   +   + KI   I  +RK   L + II Q +L +   A   NNF
Sbjct: 295 QALRYWNLEKILCAMKKIQSAILESRKNPPLSEVIIHQVLLKLTIIAKCQNNF 347


>gi|319404873|emb|CBI78474.1| putative DNA polymerase III [Bartonella rochalimae ATCC BAA-1498]
          Length = 347

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 180/353 (50%), Gaps = 11/353 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55
           MA  ++H+  Q      FL HF     + + YG D+GL+ E   +F K   +   +PFS 
Sbjct: 1   MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFST 54

Query: 56  VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115
           V L+A EI K+ +   +E  + SLF   ++I I N + +K  L  L+ +I +      I+
Sbjct: 55  VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITEPPEASFIL 114

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I++ ++KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  
Sbjct: 115 IEAGDLKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNATLSLEARQYLHQ 174

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           N+G DR+ASR+EL+KL  Y L+   I  + VK I+ D   L  +E+I+A + G + +  +
Sbjct: 175 NIGEDRLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVIDAVLLGDLASFEI 234

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
                 A    S  +L+   + FQ L+ +    E    +   +I + +  I   ++ I++
Sbjct: 235 YFSRCCAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFIVISQAQPPIFFQRKKIVE 294

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
           ++L+ WN   +   + KI   I  +RK   L + II Q +L +   A   NNF
Sbjct: 295 QALKYWNLEKILYAMKKIQSAILESRKNPLLSEVIIHQALLKLTIIAKHQNNF 347


>gi|218463266|ref|ZP_03503357.1| DNA polymerase III subunit delta [Rhizobium etli Kim 5]
          Length = 300

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 155/287 (54%)

Query: 50  HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI 109
           +DPFSL  L+  ++QK+     +E  S  LF  +K+I I   + EK + D L  +  K +
Sbjct: 3   NDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLADSLAHLAEKPL 62

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
               +I+++ ++KK + LRK AE   +V+ +  Y D+   L  LI+  L   +  I+  A
Sbjct: 63  EATYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAA 122

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
           +Q L+A +GGDRIASRNE++KL+ YC     + E HV +II D     +++ ++A + G 
Sbjct: 123 RQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASATSVDDAVDAILGGD 182

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           +   +       +SK     +L   L++FQLL+ +    E   +   +++    +++   
Sbjct: 183 LNGFLHAMQKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQVMHTMGRHLHFR 242

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           ++ IL+++LR W+   +    +++   I  +R+++ LE ++  QT+L
Sbjct: 243 RKPILEQALRQWSAESIARESNRLQAAILQSRRRQVLEDSVAMQTLL 289


>gi|304392704|ref|ZP_07374644.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130]
 gi|303295334|gb|EFL89694.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130]
          Length = 350

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 1/322 (0%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++ YG D GL FE  ++  K+      D F+ V L+A +   + S   +E ++ S+F
Sbjct: 23  HALYLIYGPDHGLAFERASRIAKSSGADMEDAFATVRLDADDAASDPSRLADEAHTVSMF 82

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             K++I +   +T K +L  +E ++     + ++II++ ++KK   LR   EK    LA+
Sbjct: 83  GGKRLIWVRG-TTRKNLLKAVEPLLALPPEDAVVIIETGDLKKTAALRSRIEKSPHALAV 141

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            CY D    +  L+ + +    K+I +E  + L+  LGGDR+ASR E+ KL  Y  ED  
Sbjct: 142 PCYADGGAAVSQLVADMVQQAGKTIDRETARALVDLLGGDRLASRGEIDKLLLYTGEDRE 201

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT  HV  I+ D   L I+ +++A   G +          LA       +++  L+ FQ+
Sbjct: 202 ITMDHVSTIVGDAASLAIDSVVDAAATGDMAKMEKTTKRLLAQGTAPFLIINACLRHFQM 261

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L         S      II      I   +++ +  +LR+W+   + +T  ++D  +   
Sbjct: 262 LHMARARMASSRQDAGSIIGGLRPPINFQRKDAVVRALRLWSGPDLEKTSRRLDAVLLEC 321

Query: 321 RKKKYLEKNIIFQTILYIAQTA 342
           R    LE+ ++   +L I + A
Sbjct: 322 RSNAALEQPLLMTMLLAITRQA 343


>gi|256112381|ref|ZP_05453302.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
 gi|265993816|ref|ZP_06106373.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764797|gb|EEZ10718.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
          Length = 347

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ +ST     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARSTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  EE+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTEEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|240851360|ref|YP_002972763.1| putative DNA polymerase III subunit delta [Bartonella grahamii
           as4aup]
 gi|240268483|gb|ACS52071.1| putative DNA polymerase III subunit delta [Bartonella grahamii
           as4aup]
          Length = 346

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 173/351 (49%), Gaps = 28/351 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55
           MA  ++H+  Q      FL+ F     + + YG D+GLI E    F K   +   DPFS 
Sbjct: 1   MAQKKAHEVDQ------FLTRFSRAFPIVLIYGPDRGLICERAQCFAKLTQVAIEDPFST 54

Query: 56  VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115
           + L+A EI K+ +   NE  + SLF   ++I I N + +K  L  L+ +I K   +  I+
Sbjct: 55  IRLDAAEIDKDPARLENEARTLSLFGGDRLIWISNAANQKGFLAALKILIEKPPESCFIL 114

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I+S ++KK   LR + E  +  +A+ C+ D+   L  LI+E L   +K++S +A++ L  
Sbjct: 115 IESGDLKKGTGLRNVVETSSKAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHE 174

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           +LG DR+ SR EL+KL  Y   ++ IT + VK I+ D   L  +E+I+A + G I     
Sbjct: 175 SLGADRLISRGELEKLCLYA-ANVHITLEDVKAIVSDVSALSQDEVIDALLLGDISG--- 230

Query: 236 LADFFLASKMPSHALLHGFL--------QKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
                  +    HA LHG L        + FQ L+ +    E    S   ++ +    I 
Sbjct: 231 -----FEAHFNRHAALHGALFFILSAAQRHFQQLQLLRYQVEVEGKSPFTVVSQARPPIF 285

Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             ++  ++++L+ W    +   + +I   +  +RK   L + II Q +L +
Sbjct: 286 FQRKKTVEQALKYWKLEQISYAMERIQGAVLDSRKNPLLGEAIIRQVLLGL 336


>gi|17986295|ref|NP_538929.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|225853488|ref|YP_002733721.1| DNA polymerase III subunit delta [Brucella melitensis ATCC 23457]
 gi|256045659|ref|ZP_05448537.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263032|ref|ZP_05465564.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str.
           63/9]
 gi|260562961|ref|ZP_05833447.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|265992081|ref|ZP_06104638.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17981878|gb|AAL51193.1| DNA polymerase iii, delta subunit [Brucella melitensis bv. 1 str.
           16M]
 gi|225641853|gb|ACO01767.1| DNA polymerase III, delta subunit [Brucella melitensis ATCC 23457]
 gi|260152977|gb|EEW88069.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|263003147|gb|EEZ15440.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092905|gb|EEZ17080.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410052|gb|ADZ67117.1| DNA polymerase III subunit delta [Brucella melitensis M28]
 gi|326539769|gb|ADZ87984.1| DNA polymerase III, delta subunit [Brucella melitensis M5-90]
          Length = 347

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ +ST     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARSTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|254718099|ref|ZP_05179910.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|265983052|ref|ZP_06095787.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|306839724|ref|ZP_07472526.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653]
 gi|264661644|gb|EEZ31905.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|306405184|gb|EFM61461.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653]
          Length = 347

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W  + +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGDSLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|148559309|ref|YP_001259862.1| DNA polymerase III subunit delta [Brucella ovis ATCC 25840]
 gi|148370566|gb|ABQ60545.1| DNA polymerase III, delta subunit [Brucella ovis ATCC 25840]
          Length = 388

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 42  MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 97

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+++ ++ +  +      I+I+
Sbjct: 98  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLVEAVKRLAAEPPQETFILIE 157

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 158 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 217

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 218 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 277

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 278 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 337

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 338 ISRWTGESLTRIMERLQRAVLESRRNAALSVPIIRQGLLAISVESLRN 385


>gi|256370455|ref|YP_003107966.1| DNA polymerase III subunit delta [Brucella microti CCM 4915]
 gi|256000618|gb|ACU49017.1| DNA polymerase III subunit delta [Brucella microti CCM 4915]
          Length = 347

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   I  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|225626436|ref|ZP_03784475.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo]
 gi|237816407|ref|ZP_04595400.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A]
 gi|225618093|gb|EEH15136.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo]
 gi|237788474|gb|EEP62689.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A]
          Length = 388

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 42  MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 97

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 98  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 157

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 158 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 217

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 218 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 277

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 278 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 337

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 338 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 385


>gi|256060021|ref|ZP_05450203.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
 gi|261323998|ref|ZP_05963195.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
 gi|261299978|gb|EEY03475.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
          Length = 347

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   I  +R+   L   II Q +L I+  + +N
Sbjct: 297 INRWTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|319409430|emb|CBI83079.1| putative DNA polymerase III [Bartonella schoenbuchensis R1]
          Length = 346

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 24/342 (7%)

Query: 18  FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FL+HF     + + YG D+GL+ E   +F K   +   DPFS + LNA EI K+     +
Sbjct: 12  FLTHFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIDDPFSTIRLNAAEIDKDPVRLQD 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E ++ SLF   ++I I N + +K  L  L+ +I +      ++I++ ++KK   LR I E
Sbjct: 72  EAHTLSLFGGDRLIWISNGANQKGFLAALKLLIKEPPKACFVLIEAGDLKKGVGLRNIVE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             ++ LA+ CY D+   L  +I+E L   + ++S EA++ L  +LG DR+ SR EL+KL 
Sbjct: 132 TASTALALPCYTDDIRSLDRVIDEVLNNFKMTLSLEARKWLYESLGADRLISRGELEKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI---------YNAIMLADFFLAS 243
            Y L+   +T + VK ++ +   L  +E+I+A + G +         Y  +    FF+ S
Sbjct: 192 LYALKKDQVTLEDVKAVVSEASALSQDEVIDAILLGDVAGFEMHFSRYATMQNTLFFVLS 251

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
               H         FQ L+ +    E    +   +I +    I  + +N+ +++L+ W  
Sbjct: 252 AAQRH---------FQQLQLLRYQVEVEGKAAFAVISQARPPIFFVGKNV-EKALKYWGL 301

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
             +   + KI   +  +RK  +L + I+ Q +L +A +A K 
Sbjct: 302 EQIAYAMEKIQCAVLDSRKNPFLGEAIVHQVLLGLAVSAQKR 343


>gi|23502905|ref|NP_699032.1| DNA polymerase III subunit delta [Brucella suis 1330]
 gi|62290901|ref|YP_222694.1| DNA polymerase III subunit delta [Brucella abortus bv. 1 str.
           9-941]
 gi|82700812|ref|YP_415386.1| DNA polymerase III subunit delta [Brucella melitensis biovar
           Abortus 2308]
 gi|161619971|ref|YP_001593858.1| DNA polymerase III subunit delta [Brucella canis ATCC 23365]
 gi|163844075|ref|YP_001628479.1| DNA polymerase III subunit delta [Brucella suis ATCC 23445]
 gi|189025114|ref|YP_001935882.1| DNA polymerase III subunit delta [Brucella abortus S19]
 gi|254690189|ref|ZP_05153443.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|254694679|ref|ZP_05156507.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696305|ref|ZP_05158133.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702353|ref|ZP_05164181.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|254705058|ref|ZP_05166886.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|254707425|ref|ZP_05169253.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|254709034|ref|ZP_05170845.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|254731222|ref|ZP_05189800.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|256030559|ref|ZP_05444173.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|256158555|ref|ZP_05456445.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|256253964|ref|ZP_05459500.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|256258443|ref|ZP_05463979.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|260169464|ref|ZP_05756275.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|260546162|ref|ZP_05821902.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038]
 gi|260567473|ref|ZP_05837943.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40]
 gi|260755730|ref|ZP_05868078.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|260758954|ref|ZP_05871302.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|260760676|ref|ZP_05873019.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884756|ref|ZP_05896370.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|261215007|ref|ZP_05929288.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|261221106|ref|ZP_05935387.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|261314910|ref|ZP_05954107.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|261316533|ref|ZP_05955730.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|261752916|ref|ZP_05996625.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|261755761|ref|ZP_05999470.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|261758991|ref|ZP_06002700.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|265987607|ref|ZP_06100164.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|265997067|ref|ZP_06109624.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|297247285|ref|ZP_06931003.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|306842828|ref|ZP_07475468.1| DNA polymerase III, delta subunit [Brucella sp. BO2]
 gi|23348936|gb|AAN30947.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62197033|gb|AAX75333.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616913|emb|CAJ12014.1| putative DNA polymerase III, delta subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|161336782|gb|ABX63087.1| DNA polymerase III, delta subunit [Brucella canis ATCC 23365]
 gi|163674798|gb|ABY38909.1| DNA polymerase III, delta subunit [Brucella suis ATCC 23445]
 gi|189020686|gb|ACD73408.1| putative DNA polymerase III, delta subunit [Brucella abortus S19]
 gi|260096269|gb|EEW80145.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038]
 gi|260156991|gb|EEW92071.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40]
 gi|260669272|gb|EEX56212.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|260671108|gb|EEX57929.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675838|gb|EEX62659.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|260874284|gb|EEX81353.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|260916614|gb|EEX83475.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919690|gb|EEX86343.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|261295756|gb|EEX99252.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|261303936|gb|EEY07433.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|261738975|gb|EEY26971.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|261742669|gb|EEY30595.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|261745514|gb|EEY33440.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|262551535|gb|EEZ07525.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|264659804|gb|EEZ30065.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|297174454|gb|EFH33801.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|306287022|gb|EFM58533.1| DNA polymerase III, delta subunit [Brucella sp. BO2]
          Length = 347

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|110635645|ref|YP_675853.1| DNA polymerase III subunit delta [Mesorhizobium sp. BNC1]
 gi|110286629|gb|ABG64688.1| DNA polymerase III, delta subunit [Chelativorans sp. BNC1]
          Length = 345

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 165/317 (52%), Gaps = 1/317 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D+GL+ E    F +   +   DPFS+V ++A E  +      +E  +  +F+ 
Sbjct: 22  VVLLYGPDRGLVSERARLFAQKSGLPLDDPFSVVKIDAAEADQP-GRLLDEARTVPMFAD 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ +  + ++  +   +  ++ +   + +++I++ ++KK+ +LR   E+    +A+ C
Sbjct: 81  RRLVWVRGVGSQSAIAADIAALVEEPPSDCLVLIEAGDLKKSASLRTTVERGDRAIALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D+   +  +I++ L   + +I+ +A+ +L ANLGGDR+A+R EL+KL+ YC     +T
Sbjct: 141 YSDDSRSIDAVIDDVLSKAKLTITLDARHLLKANLGGDRLATRGELEKLALYCAGASEVT 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              ++ +I D   + ++E ++A + G+I +   L    +A   P+  +L   L+  Q L+
Sbjct: 201 ADDIRALIGDVSGISVDEAVDAIMTGRIADFDHLFTRHVAGGSPAFLMLSAALRHVQGLQ 260

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            +    E    S    +      +   +R+ ++++++ WN+ ++     ++   I  +R+
Sbjct: 261 LMREQVEAQGKSPAAAVASARPPVFFARRSAVEQAVQRWNQAMLHAAAERLQGAILKSRQ 320

Query: 323 KKYLEKNIIFQTILYIA 339
              + + +  Q +L +A
Sbjct: 321 HPAVAEPVSRQALLALA 337


>gi|306843473|ref|ZP_07476074.1| DNA polymerase III, delta subunit [Brucella sp. BO1]
 gi|306276164|gb|EFM57864.1| DNA polymerase III, delta subunit [Brucella sp. BO1]
          Length = 347

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     ++  DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLSLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAIENASAGMALPCYSDDARGIDGVIDDILAEWKMQIALDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|254713540|ref|ZP_05175351.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
 gi|254716105|ref|ZP_05177916.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261217876|ref|ZP_05932157.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261321274|ref|ZP_05960471.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
 gi|260922965|gb|EEX89533.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261293964|gb|EEX97460.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
          Length = 347

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 175/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEMVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|153008199|ref|YP_001369414.1| DNA polymerase III subunit delta [Ochrobactrum anthropi ATCC 49188]
 gi|151560087|gb|ABS13585.1| DNA polymerase III, delta subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 172/341 (50%), Gaps = 4/341 (1%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F+ + T     S  V + YG DKGL+ E   +F +   +   DPF+++ + A EI+
Sbjct: 8   EVDSFLARPTN----SFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEADEIE 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  + S+F  +++I I+N + +KK+ + ++ +  +      +++++ ++KK 
Sbjct: 64  ADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPLETFVLVEAGDLKKG 123

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ + +Q+L A+LGGDR+A+
Sbjct: 124 AGLRSAVENASAGMALPCYSDDSRGIDGVIDDVLAEWKMQITLDGRQLLRASLGGDRLAT 183

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R EL+KL  Y      I    V++ + D   L  +E+I+A + G +    +  D  + S 
Sbjct: 184 RGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEVSFDRVVKSG 243

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL+  +++FQ ++ +  I +    S   ++      I   ++ +++ S+  W   
Sbjct: 244 TAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAAARPPIFFNRKKLVENSVSRWTGE 303

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +   + ++   I  +R+   L   II Q +L I+  + +N
Sbjct: 304 SLARVMERLQRAILESRQNAALAIPIIRQCLLAISVESLRN 344


>gi|49474792|ref|YP_032834.1| DNA polymerase III subunit delta [Bartonella quintana str.
           Toulouse]
 gi|49240296|emb|CAF26774.1| hypothetical protein BQ13150 [Bartonella quintana str. Toulouse]
          Length = 354

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 164/335 (48%), Gaps = 21/335 (6%)

Query: 18  FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FL+HF     + + YG D+GL+ E + +F K   I   DPFS V L+A EI K+ +   +
Sbjct: 12  FLTHFARSFPIVLIYGPDRGLVCERVQRFVKLTQIAVEDPFSTVRLDAAEIDKDPARLVD 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E  + SLF   ++I + N + +K  L  L+ +I +      I+I++ ++KK   LR I E
Sbjct: 72  EARTLSLFGGDRLIWVSNGAHQKNFLAVLKILIKEPPEKSFILIEAGDLKKGTGLRNIIE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +  +A+ C+ D+   L  L+ E L   + +IS +A++ LL +LGGD + SR EL+KL 
Sbjct: 132 SASIAMALPCFADDIRALDTLVNEVLDHFKMTISLDARKWLLHHLGGDHLVSRGELEKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y LE   I  + VK ++ D   L  +E+I+A + G I            +    HA L 
Sbjct: 192 LYALEKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDIAG--------FEAHFSRHATLQ 243

Query: 253 GFL--------QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             L        + FQ L+ +    +    S   +I + +  I   ++  ++ +L  W   
Sbjct: 244 NALFFILNTAQRHFQQLQLLRYQIDVEGKSAFTVISQAQPPIFFQRKKTIEHALNYWGME 303

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            +   + ++   +  +RK   L + II Q +L +A
Sbjct: 304 QISYAMERLQGAVLESRKNPLLGEAIIRQALLALA 338


>gi|319780619|ref|YP_004140095.1| DNA polymerase III, subunit delta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166507|gb|ADV10045.1| DNA polymerase III, delta subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 347

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 156/323 (48%), Gaps = 12/323 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D+GL+ E    F     +   DPFS+V L   E+ ++     +E  +  +FS 
Sbjct: 22  IVLLYGPDRGLVSERAKAFAGKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + N S +K + D ++ +  +   + II+I++ ++KK   LR I E   + +A+ C
Sbjct: 82  RRLLWVRNASGQKALADDVKALTAEPARDAIILIEAGDLKKGVGLRAIVEAADNAMALPC 141

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    +  +I+  L     S++ EA+Q L  NLGGDR+ASR E++KL  Y      I 
Sbjct: 142 YADEARDIDTVIDGELGRAGMSMTMEARQALRRNLGGDRLASRGEIEKLVLYAHGQTEIG 201

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL---QKFQ 259
            + VK +  D      ++ ++A ++GKI       DF  A      +    FL      +
Sbjct: 202 LEEVKAMSGDVSGASFDDAVDALLEGKI------GDFDTAFTRHCQSGGQPFLVLSSAMR 255

Query: 260 LLEKIHIIK---ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            L++I I++   E  N +   ++      +   +R +++++L  W+   +   L ++   
Sbjct: 256 QLQQIQIMRGQMESGNRNAASVVAAARPPVFFSRRKLVEKALERWSTEALGRALTRLQTA 315

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
           +   R++  L   +  Q +L IA
Sbjct: 316 VLQTRRRPDLSVALARQALLGIA 338


>gi|260467204|ref|ZP_05813381.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029057|gb|EEW30356.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 348

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 156/323 (48%), Gaps = 12/323 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D+GL+ E    F     +   DPFS+V L   E+ ++     +E  +  +FS 
Sbjct: 22  IVLLYGPDRGLVSERAKAFAAKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + N S +K + D ++ +  +   + II+I++ ++KK   LR + E     +A+ C
Sbjct: 82  RRLLWVRNASGQKALADDVKALAAEPARDAIILIEAGDLKKGVGLRAVVEAADIAMALPC 141

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    +  +I++ L     S++ EA+Q L  NLGGDR+ASR E++KL  Y      I 
Sbjct: 142 YADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDRLASRGEIEKLVLYAHGQKEIG 201

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------SKMPSHALLHGFLQ 256
            + V+ +  D      ++ ++A ++GK+       DF  A      S  P   +L   ++
Sbjct: 202 LEEVRAMSGDVSGASFDDAVDALLEGKV------GDFDTAFTRHCQSGGPPFLVLSSAMR 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + Q ++ +    E    +   ++      +   +R +++++L  W+ + +   L ++   
Sbjct: 256 QLQQIQVMRGQMEQGGRNAASVVAGARPPVFFSRRKLVEKALERWSSDALGRALTRLQTA 315

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
           +   R++  L   +  Q +L IA
Sbjct: 316 VLQTRRRPDLSAALARQALLGIA 338


>gi|114705822|ref|ZP_01438725.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506]
 gi|114538668|gb|EAU41789.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506]
          Length = 345

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S+ V + YG D GL+ E       +  I   DPF+ V L+A E++K+I   ++E  + SL
Sbjct: 19  SYPVILLYGPDPGLVSERAATIAGHSGIDPSDPFASVSLSADELEKDIGRLYDEALTVSL 78

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F   ++I +    T K + + +  +  K +   I+I+++ ++K+N  LR   E+    +A
Sbjct: 79  FGGTRLIRVRGAGTGKVLSEAVATLSEKKLEGAILIVEAGDLKRNAALRLSVERAKFAIA 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           + CY D    L  +I+E        I +E ++ L + LG +R+ASR E++KL  Y     
Sbjct: 139 LPCYQDEGRALDRMIDEEFSRAGLQIDREGREELKSRLGANRMASRGEVEKLCVYAYGTE 198

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V  I+ D     ++E I+ATI G +     L +    +  P   L    L+  Q
Sbjct: 199 RVTADDVAAIVGDVSADAVDEAIDATISGAVKKLPALIERLTDAGTPIFQLQQNLLRTIQ 258

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +  I E       +++++   +    ++  L+ +L  W  + +  T  +I+  I  
Sbjct: 259 QLTAMREIVERQGEPVSRVVERRRPHF--KRKAALETALASWPLDALARTARRIETDILR 316

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347
           +RK+  +   I  Q +L IA  A KN  
Sbjct: 317 SRKENQMALTITRQMMLSIAVEAAKNRR 344


>gi|239833098|ref|ZP_04681427.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825365|gb|EEQ96933.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 173/341 (50%), Gaps = 4/341 (1%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F+ + T     S  V + YG DKGL+ E   +F +   +   DPF+++ + A EI+
Sbjct: 8   EVDSFLARPTS----SFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEADEIE 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  + S+F  +++I I+N + +KK+ + ++ +  +      +++++ ++KK 
Sbjct: 64  ADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPQETFVLVEAGDLKKG 123

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LR   E   + +A+ CY D+   +  +I++ L   +  I+ + +Q+L A+LGGDR+A+
Sbjct: 124 AGLRSAVENAPAGMALPCYSDDSRGIDGVIDDVLAEWKIQITLDGRQLLRASLGGDRLAT 183

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R EL+KL  Y      I    V++ + D   L  +E+I+A + G +    +  D  + S 
Sbjct: 184 RGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEISFDRVVKSG 243

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL+  +++FQ ++ +  I +    S   ++  T   I   ++ +++ ++  W+  
Sbjct: 244 TAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAATRPPISFNRKKLIENAVSRWSGE 303

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +   + ++   +  +R+   L   II Q +L I+  A +N
Sbjct: 304 SLARVMERLQRAVLESRQNASLAIPIIRQCLLAISVEALRN 344


>gi|49476274|ref|YP_034315.1| DNA polymerase III subunit delta [Bartonella henselae str.
           Houston-1]
 gi|49239082|emb|CAF28385.1| hypothetical protein BH16220 [Bartonella henselae str. Houston-1]
          Length = 350

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 23/342 (6%)

Query: 18  FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FL  F     + + YG D+GL+ E +  F K   I   DPF  V L+A EI K+ +   +
Sbjct: 12  FLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAAEIDKDPARLLD 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E  + SL    ++I + N + +K  LD L+ +I +      I+I++ ++KK   LR I E
Sbjct: 72  EARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDLKKGTGLRNIIE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +  +A+ C+ D+   L  LI+E L   + +++ +A++ LL +LGGD + SR+EL+KL 
Sbjct: 132 TASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGDHLVSRSELEKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI---------YNAIMLADFFLAS 243
            Y LE   I  + VK ++ D   L  +E+I+  + G +         Y  +  A FF+ S
Sbjct: 192 LYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYATLQGALFFILS 251

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
               H       Q+ Q+L +  I  E  N+ F  I Q  +  I   ++  ++ +L  W +
Sbjct: 252 TAQRH------FQQLQIL-RYQIDVEGKNM-FTAISQ-AQPPIFFQRKKTIERALSYWGR 302

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
             +   + +I H +  +RK   L + II Q +L +A  A + 
Sbjct: 303 EQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQ 344


>gi|319406358|emb|CBI79997.1| putative DNA polymerase III [Bartonella sp. AR 15-3]
          Length = 347

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 173/341 (50%), Gaps = 11/341 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55
           MA  ++H+  Q      FL HF     + + YG D+GL+ E   +F K   +   +PF+ 
Sbjct: 1   MAQKKAHEVDQ------FLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFTT 54

Query: 56  VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115
           V L+A EI K+ +   +E  + SLF   ++I + N + ++  L  L+ +I +      I+
Sbjct: 55  VRLDAAEIDKDPARLGDEARTLSLFGGDRLIWVSNGANQQGFLKALKLLITEPPEASFIL 114

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I++ ++KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  
Sbjct: 115 IEAGDLKKGVGLRNIIEMASTAIALPCYTDNTHSLDILIDEILGEFNITLSLEARQCLHQ 174

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           N+G DR+ASR+EL+KL  Y  +   +  + VK I+ D   L  +E+I+A + G +     
Sbjct: 175 NIGEDRLASRSELEKLCLYTFKKAHVAFEDVKAIVSDVSTLSQDEVIDAVLLGDLVGFET 234

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
                +A    S  +L+   + FQ L+ +    E    +   ++ + +  I   ++ I++
Sbjct: 235 YFSCCIAVNKTSLFVLNTAQRHFQQLQLLRYQIEIEGKNSFVVVSQAQPPIFFQRKKIVE 294

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           ++LR WN   +   + KI   I  +RK   L + II + +L
Sbjct: 295 QALRYWNLEKILYAMKKIQSAILESRKNPLLSEAIIHKVLL 335


>gi|294851286|ref|ZP_06791959.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|294819875|gb|EFG36874.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA  ++H+   F+ + T     S  V + YG DKGL+ E   ++     +   DPF+++ 
Sbjct: 1   MAQKKAHEVDSFLARPTS----SFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           + A EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I+
Sbjct: 57  MEADEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+L
Sbjct: 117 AGDLKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR+A+  EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  
Sbjct: 177 GGDRLATHGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAF 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ +
Sbjct: 237 DRVVKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++   +  +R+   L   II Q +L I+  + +N
Sbjct: 297 ISRWTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRN 344


>gi|319899480|ref|YP_004159577.1| hypothetical protein BARCL_1344 [Bartonella clarridgeiae 73]
 gi|319403448|emb|CBI77016.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 347

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 163/324 (50%), Gaps = 5/324 (1%)

Query: 18  FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FL +F     + + YG D+GL+ E   +F K   +   +PFS V L+A EI K+ +   N
Sbjct: 12  FLKYFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIENPFSTVRLDAAEIDKDPARLGN 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E  + SLF   ++I + N    K  L  L+ +I +      I+I++ ++KK   LR I E
Sbjct: 72  EARTLSLFGGDRLIWVSNGDNHKGFLKALKFLITEPPKKSFILIEAGDLKKGVGLRNIIE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  N+G DR+ASR+EL+KL 
Sbjct: 132 MASTAIALPCYADNVHSLNGLIDEILDEFSITLSLEARQCLHQNIGEDRLASRSELEKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y L+   I  + VK ++ D   L  +E+I+A + G +         ++        +L+
Sbjct: 192 LYALKKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDLAGFETYFSRYVVINSRFLFILN 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              + FQ L+ +    E    +  +++ +    I   ++  ++++LR WN   +   + K
Sbjct: 252 VAQRNFQQLQLLRYQVEIEGKNSFEVVAQARPPIFFQRKKKVEQALRYWNLEQILYAMKK 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336
           I   I  +RK   L + II Q +L
Sbjct: 312 IQSAILESRKNPLLNETIIHQLLL 335


>gi|254472510|ref|ZP_05085910.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062]
 gi|211958793|gb|EEA93993.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062]
          Length = 346

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 155/326 (47%), Gaps = 6/326 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E         +    DPFS V L+A +I  + S   +E  +  LF  
Sbjct: 22  LILVYGPDTGLVNERAQALISKAAAENDDPFSQVKLDAADIAADPSRLVDEALTIPLFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I +    T K VL  +E ++  N     I+I++ ++KK + LRK  E   + +AI C
Sbjct: 82  RRTIWVRENGT-KSVLPAVEPLLKNNDFTAFIVIEAGDLKKTSGLRKKIEASKTAVAIPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           + D    +  L++E        ISKEA+  L   LG DRIASR EL+KL  Y + D  I 
Sbjct: 141 FADTARDVDRLVDEETQSAGLQISKEARMALHTLLGADRIASRGELKKLCLYAMNDNRIE 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
             HV++II D     ++E+I+A   G         +   AS      +    L+ FQ+L 
Sbjct: 201 VHHVEEIIGDASAFAMDELIDAAALGDTVTLDHGLERLSASGTDVGVIASQALRHFQML- 259

Query: 263 KIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
             H+  +K    I+ E +I      I   +R+ +   + IWN++ +   L +++  +  A
Sbjct: 260 --HLCRLKANQRIAVEDVIGGIRPPIFWKRRSKIVRQVEIWNEDFLERALIRLNDAVKEA 317

Query: 321 RKKKYLEKNIIFQTILYIAQTACKNN 346
           R    L   I+  T+L IAQ A  +N
Sbjct: 318 RFNANLSTAIVSHTLLAIAQVAKASN 343


>gi|13473770|ref|NP_105338.1| DNA polymerase III subunit delta [Mesorhizobium loti MAFF303099]
 gi|14024521|dbj|BAB51124.1| mlr4475 [Mesorhizobium loti MAFF303099]
          Length = 347

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D+GL+ E    F +   +   DPFS+V L   E+ ++     +E  +  +FS 
Sbjct: 22  IVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEGSEVDRDEGRLLDEARTVPMFSD 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + N + +K + + ++ +  +   + II+I++ ++KK   LR + E   + +A+ C
Sbjct: 82  RRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGDLKKGVGLRAVVEGADNAMALPC 141

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    +  +I++ L     S++ EA+Q L  NLGGDR+ASR E++KL  Y      I 
Sbjct: 142 YADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGDRLASRGEIEKLILYAHGQKEIG 201

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------SKMPSHALLHGFLQ 256
            + V+ +  D      ++ ++A ++GK+       DF  A      S  P   +L   ++
Sbjct: 202 LEDVRAMSGDVSGTSFDDAVDALLEGKV------GDFDTAFTRHCQSGGPPFLVLSSAMR 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + Q ++ +    +    +   ++      +   +R +++++L  W+ + +   L ++   
Sbjct: 256 QLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALERWSSDALSRALTRLQTA 315

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
           +   RK+  L + +  Q +L IA
Sbjct: 316 VLQTRKRPDLSEALARQALLGIA 338


>gi|163869289|ref|YP_001610545.1| DNA polymerase III subunit delta [Bartonella tribocorum CIP 105476]
 gi|161018992|emb|CAK02550.1| putative DNA polymerase III [Bartonella tribocorum CIP 105476]
          Length = 346

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 174/350 (49%), Gaps = 30/350 (8%)

Query: 1   MATIESHKFIQKSTKNLFLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSL 55
           MA  ++H+  Q      FL+ F     + + YG D+GLI E   +F K   +   DPFS 
Sbjct: 1   MAQKKAHEVDQ------FLTRFSRAFPIVLIYGPDRGLICERAQRFAKLTKVAIEDPFST 54

Query: 56  VVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII 115
           + L+A +I K+ +   NE  + SLF   ++I I + + +K  L  L+ +I K      I+
Sbjct: 55  IRLDAADIDKDPACLENEARTFSLFGGDRLIWISHAANQKGFLAALKLLIEKPPEKSFIL 114

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I++ ++KK   LR + E   + +A+ C+ D+   L  LI+E L   +K++S +A++ L  
Sbjct: 115 IEAGDLKKGTGLRNVIETAANAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHE 174

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI----- 230
           +LG DR+ SR EL+KL  Y L ++ IT + VK I+ D   L  +EII+A + G I     
Sbjct: 175 SLGVDRLVSRGELEKLCLYAL-NVHITLEDVKAIVSDVSALSQDEIIDALLLGDISGFEA 233

Query: 231 ----YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286
               + A+  A FF+ S    H         FQ L+ +    E    +   ++ +    I
Sbjct: 234 HFNRHAALQGALFFILSTAQRH---------FQQLQLLRYQVEVEGKTPVTVVSQARPPI 284

Query: 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
              ++  ++++++ W    +   + +I   +  +RK   L + II Q +L
Sbjct: 285 FFQRKKNVEQAVKYWKLEQISYAMERIQSAVLESRKNPLLGEAIIRQALL 334


>gi|121602554|ref|YP_988388.1| DNA polymerase III subunit delta [Bartonella bacilliformis KC583]
 gi|120614731|gb|ABM45332.1| DNA polymerase III, delta subunit [Bartonella bacilliformis KC583]
          Length = 347

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 23/333 (6%)

Query: 18  FLSHF-----VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
           FL+HF     + + YG D+GL+ E + +F K   I   DPF+ V L+A EI K+ +   +
Sbjct: 12  FLTHFSRSFPIVLIYGPDRGLVCERVQRFIKLTQIATDDPFATVRLDAAEIDKDPARLGD 71

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           E  + SLF   +++ + N + +K  L+ L+ +I +      I+I++ ++KK   LR I E
Sbjct: 72  EARTLSLFGSDRLVWVSNGANQKNFLEALKLLIAEPPEKSFILIEAGDLKKGIGLRNIVE 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +  +A+ CY D+   L  LI+E L   + ++S EA++ L  +LGGD + SR EL+KL 
Sbjct: 132 TASVAMALPCYADDVRSLDTLIDEVLESFKMTLSLEARKGLYESLGGDHLVSRRELEKLC 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG---------KIYNAIMLADFFLAS 243
            Y  E   IT + VK ++ D      +E+I+A + G           Y A+    F + S
Sbjct: 192 LYASEKRHITLEDVKAVVSDVSAFSSDEVIDAILLGDGKEFEVHFSRYVAMHNTPFLVLS 251

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
               H         FQ L+ +    E    +   ++ +    I   ++  ++++L+ W  
Sbjct: 252 TAQRH---------FQQLQILRYQVEIEQKTAFAVMSQARPPIFFQRKKTVEKALKYWTL 302

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
             +   + KI   +  +RK   L + II + +L
Sbjct: 303 EKISYAMEKIQCALLESRKNPLLGEAIIHRVLL 335


>gi|154245395|ref|YP_001416353.1| DNA polymerase III subunit delta [Xanthobacter autotrophicus Py2]
 gi|154159480|gb|ABS66696.1| DNA polymerase III, delta subunit [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 159/325 (48%), Gaps = 4/325 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GL+ E      +      HDPF+LV L   +I  +     +E ++  LF  
Sbjct: 22  VVLIFGPDTGLVHERAQGLVRRAVPDAHDPFALVRLEGDDISSDPRRLIDETSTIGLFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ +   +  + ++  L+ ++    C+ ++++++ ++KK   LR + E   + LAI+C
Sbjct: 82  ERVVWVR--AGSRNIVPALQPVLAGR-CDALVVVEAGDLKKGAPLRALCENAPNALAIAC 138

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D+   L  L++  +     +I ++A+ +L++ +GGDR+ASR E+ KL  Y      ++
Sbjct: 139 YADSDRDLSRLVDAMMAEAGLTIDRDARDLLVSLIGGDRLASRGEIAKLILYAQGQQRVS 198

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+ I+ D   L +++++++ + G+   A+      + +     A+L   L+    L 
Sbjct: 199 LEDVRTIVGDASALALDDVVDSALAGETREALAALAKAMGAATRPDAVLGSLLRALTALH 258

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            +  +      S ++++      +   ++  ++++LR  + +   + L  +D  +  AR+
Sbjct: 259 PM-TLAVAGGASPDQVVGSARPPVHFSRKAKMEKALRALDPDRCLKALLAVDDAVLAARR 317

Query: 323 KKYLEKNIIFQTILYIAQTACKNNN 347
              L   I  + +L +AQ A +   
Sbjct: 318 NAPLAPAICERVVLQVAQQAGRGRR 342


>gi|298293751|ref|YP_003695690.1| DNA polymerase III subunit delta [Starkeya novella DSM 506]
 gi|296930262|gb|ADH91071.1| DNA polymerase III, delta subunit [Starkeya novella DSM 506]
          Length = 340

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 8/282 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GL+ E    +    +    DPF LV L+  EI  +     +E  + +LF  
Sbjct: 22  VLLLFGPDSGLVRERARAYLARAAEGSSDPFGLVRLDGDEIAGDPGRLVDEAGTVALFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I +   S  + V+  +E ++     + I++I++ ++K+   LR + E     LAI+C
Sbjct: 82  RRVISLRVGS--RNVVPAVEALLAAPPGDAIVVIEAGDLKRGQGLRALCEASPRALAITC 139

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    L  LI+  +     SI ++A+  L+  LGGDR+ASR E+ KL  Y   +  IT
Sbjct: 140 YADTDRDLTRLIDTMVTEAGLSIDRDARAELMGLLGGDRLASRGEIAKLLLYAAGEPRIT 199

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQL 260
            +HV+ I+ D   L ++EI ++   G+     M + F  AS   M +  +L    +  Q 
Sbjct: 200 AEHVRAIVGDASSLALDEIADSAFAGQPTE--MASAFAKASGEGMRADIILGSVCRTGQA 257

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           L  + +  +  +I  E+ I+     I   ++ +++++LR W+
Sbjct: 258 LHLLRLAADAGSI--ERAIESARPAIHFRRKPLIEKALRSWS 297


>gi|315122027|ref|YP_004062516.1| DNA polymerase III subunit delta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495429|gb|ADR52028.1| DNA polymerase III subunit delta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 113

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 84/109 (77%)

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           +A+FF  SKM  HALL+GFLQKFQLLEKI+I  E   IS EK IQK EK  IP KR +LQ
Sbjct: 1   MAEFFFGSKMSPHALLNGFLQKFQLLEKIYIESEFLEISIEKTIQKFEKTRIPKKRLLLQ 60

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           + L+IWNKN++++ LHKI+  IHL RKK+ LEK+IIFQ IL I+QTA K
Sbjct: 61  KFLQIWNKNIIKKILHKINQEIHLLRKKRSLEKSIIFQIILLISQTAHK 109


>gi|182677221|ref|YP_001831367.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633104|gb|ACB93878.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 340

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%)

Query: 1   MATIESH---KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  I+SH   +F+ + T ++FL    ++ +G+D GL+ E +            DPF  + 
Sbjct: 1   MVAIKSHEADRFLARPTTHVFL----YLVHGTDNGLVAERVKTIVARSVDDPKDPFQFLR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++  +     +E ++  LF  ++ ILI   +  K  +  +E I+     +  II++
Sbjct: 57  LDGDDLAADPQRLADEAHTVPLFGGRRAILIG--ARGKAFIQAVEPILAVPPQDCTIIVE 114

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +  +KK+N LRK+ E+  +  AI CYPD++  L  LIE      +++I  +AK+ LL+ L
Sbjct: 115 AGALKKDNALRKLCERDKNAAAIECYPDSQRDLQALIEAETAATRQTIRADAKEELLSLL 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G DR+ +R EL KL  Y   +  IT  HV+ I+ D   L+++  INA   G+  NA  +A
Sbjct: 175 GADRLTTRGELDKLLLYTHGEAEITLSHVEAIVADASSLFVDGAINAAFAGEATNADRIA 234


>gi|148251787|ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizobium sp. BTAi1]
 gi|146403960|gb|ABQ32466.1| DNA polymerase III, delta subunit [Bradyrhizobium sp. BTAi1]
          Length = 342

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 4/211 (1%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + YG D GL+ E  +    +      DPFS+V L+  E+    S   +E  +  L
Sbjct: 19  ARPLILLYGPDTGLVRERADTLMASAVDNPDDPFSVVKLDGDELAAEPSRLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++ I +   S      ++ L ++ +++ C   I+I++ +I+ ++ LRKI EK T+  
Sbjct: 79  FGGRRAIRVRAGSRNFASGVETLSQMTVRD-CR--IVIEAGDIRPDSPLRKICEKATTAA 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI CYPD +  L  LI+E L +    I+ +A+  L+A LGGDR ASRNEL+KL+ +   +
Sbjct: 136 AIGCYPDTERDLARLIDEELRVAALRIAPDARASLMALLGGDRQASRNELRKLTLFAHGE 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229
             +T  HV  ++ D   + ++ I++    GK
Sbjct: 196 GEVTLDHVMAVVADASEMKLDPIVDGAFGGK 226


>gi|218670995|ref|ZP_03520666.1| DNA polymerase III subunit delta [Rhizobium etli GR56]
          Length = 220

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 107/195 (54%)

Query: 36  ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEK 95
           E   Q      +   DPFSL  L+  ++QK+     +E  S  LF  +K+I I   + EK
Sbjct: 3   ERAGQLAGKTGVALDDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEK 62

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155
            ++D L  +  K +    +I+++ ++KK + LRK AE   +V+ +  Y D+   L  LI+
Sbjct: 63  YLVDSLALLAEKPLEAAYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLID 122

Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215
             L   +  I+  A+Q L+A +GGDRIASRNE++KL+ YC     + E HV +II D   
Sbjct: 123 AELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASA 182

Query: 216 LYIEEIINATIQGKI 230
           + +++ ++A + G +
Sbjct: 183 ISVDDAVDAILGGDL 197


>gi|86747513|ref|YP_484009.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris HaA2]
 gi|86570541|gb|ABD05098.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris HaA2]
          Length = 342

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G D GL+ E  +    +     +DPF+LV L+  E+    S   +E NS  +F  
Sbjct: 22  IILLFGPDAGLVRERADALIASALDDPNDPFALVRLDGDELAAEPSRLVDEANSIPMFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I I   S  +  +  +E ++        I+I++ +IK +N LRK  EK  S +AI C
Sbjct: 82  RRAIRIRAGS--RSFVAGVETLVASPPKECRIVIEAGDIKPDNALRKACEKAASAVAIGC 139

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD +  L  LI++ L   Q  I ++A+ +L+  LGGDR ASRNE++KL+ Y      IT
Sbjct: 140 YPDAEADLAKLIDDELRAAQLQIGRDARGVLMTLLGGDRQASRNEVRKLALYAHGQGEIT 199

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229
              V   + D   L ++ I++A   GK
Sbjct: 200 LDDVIACVSDASDLKLDVIVDAAFSGK 226


>gi|27375740|ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA
           110]
 gi|27348878|dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110]
          Length = 342

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 4/208 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E  +    +     +DPFSLV L+  E+    S   +E  +  LF  
Sbjct: 22  IVLLYGPDAGLVRERADALIASAVDDPNDPFSLVRLDGDELSAEPSRLVDEAMTVPLFGG 81

Query: 83  KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++ I +   S      +D L E+ +K+ C   I+I++ E++  + LRK  E+  + +AI 
Sbjct: 82  QRAIRVRAGSRSFASGIDTLAEMGVKD-CR--IVIEAGELRPESPLRKACERAKTAVAIG 138

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CYPD +  L  L+++ L I    I+++A+  L++ LGGDR ASRNEL+KL+ Y      I
Sbjct: 139 CYPDTERDLAKLMDDELRIANLRIAQDARAALMSFLGGDRQASRNELRKLTLYAHGKGEI 198

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229
           T + V  ++ D   L ++ I++    G+
Sbjct: 199 TLEDVMAVVADASELKLDPIVDGAFAGR 226


>gi|158422193|ref|YP_001523485.1| DNA polymerase III subunit delta [Azorhizobium caulinodans ORS 571]
 gi|158329082|dbj|BAF86567.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 337

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 154/319 (48%), Gaps = 4/319 (1%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V + +G D GL+ E      K +     DPF++V L   E+  +     +E  +  LF
Sbjct: 20  HAVVLIFGPDMGLVRERAAGLVKRVVPDVADPFAVVRLEGDELSGDPQRLIDETQTVGLF 79

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             ++++ +   +  +  +  LE ++ +   + ++++++ ++KK   LR + E     LAI
Sbjct: 80  GGERVVWVR--AGSRNFVPALEPVL-EVGGSTLVVVEAGDLKKGAPLRTLCEASPKALAI 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            CY D    L  L++  L     +I ++AK++L++ +GGDR+ASR E+ KL+ Y      
Sbjct: 137 PCYADGDRDLGKLVDTMLSEAGLAIDRDAKELLVSLIGGDRLASRGEIAKLALYAQGQGR 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T + V+ I+ D   L +++++++T+ G+   A         +     A+L   L+    
Sbjct: 197 VTLEDVRVIVGDASALALDDVVDSTLAGQAVEATAALAKAWGAATRPDAVLGALLRALSS 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L ++ +  +    + +++I +    +   ++  L+ +LR  N       +  +D  +  A
Sbjct: 257 LHQMALQVQAGTPA-DRVIDQARPMVHFSRKPKLERALRSLNAERCLRAILLVDEAVLAA 315

Query: 321 RKKKYLEKNIIFQTILYIA 339
           R+   + + I  + +L ++
Sbjct: 316 RRNAGMAQAITERVVLQLS 334


>gi|217976533|ref|YP_002360680.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2]
 gi|217501909|gb|ACK49318.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2]
          Length = 338

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
           + E+ KF+++   ++F    V++ YG D GL+ E      K       DPF L+ +   +
Sbjct: 6   SFEADKFLERPAPHIF----VYLLYGPDAGLVAERARALVKKSVDNPKDPFQLLRIGGDD 61

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           +  +     +E N+  LF  ++ I IE  +  +  +  LE +         III++  +K
Sbjct: 62  LAADPLRLADEANTIGLFGDRRAIWIE--AQGRAFVTALEPLFAAPPQGSTIIIEAGALK 119

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K+  LR++ E+  S  AI+C PD++  +  LIE        S+S EAK +L + LG DR+
Sbjct: 120 KDAVLRRLCEREKSAAAIACMPDSQEEIAHLIEREAAGAGLSVSPEAKTLLASLLGQDRL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A+R EL+KL  Y      I  +HV+ I+ D   L ++  ++    G
Sbjct: 180 ATRGELEKLVLYAHGAGAIGLEHVEAIVSDASSLLLDHAVDGAFGG 225


>gi|307943447|ref|ZP_07658791.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4]
 gi|307773077|gb|EFO32294.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4]
          Length = 347

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 154/338 (45%), Gaps = 6/338 (1%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E+ +F+            +FIF G D GL+ E   Q  K  S    DPF+L  ++A EI 
Sbjct: 8   EADRFVANPPTG---GGVIFIF-GPDTGLVSERATQLVKKASEGDSDPFNLAKIDASEIV 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  +  LF  ++II I+  S  K +   L+ ++  +    +I+I+  ++KK 
Sbjct: 64  SDPTRLIDEFLTIPLFGGRRIIWIKETSG-KNLSPALDPVLKLDDWPSLIVIEGGDVKKG 122

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LRK+ E     +AI CY D    +  LI+E       +IS+EA+  L + LGGDR+AS
Sbjct: 123 VGLRKLVESHKRAVAIPCYSDGDRTIDQLIDEETRAANITISREARAALHSLLGGDRMAS 182

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R EL+KL  Y L    I    +  +I D       E+I+A   G +       +    + 
Sbjct: 183 RGELKKLCLYTLGKERIETDDIAAVIGDASAFETSELIDAAALGDLATLDHGLERLSEAG 242

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             +  + +  L+ FQLL ++    +    +  +++      I   +R  +   L+IW   
Sbjct: 243 ANASVIANQALKHFQLLHRMRADVDQGRPA-SQVVDGQRPPIFFARRPGIDRQLQIWATK 301

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
            + + L  +     ++R    L   ++ + +L +A+ A
Sbjct: 302 DLEKGLSILADATRISRLNDNLGVPVLSEALLTVARAA 339


>gi|254501308|ref|ZP_05113459.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11]
 gi|222437379|gb|EEE44058.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 148/291 (50%), Gaps = 13/291 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GL+ E  ++     S    DPF+L+ ++A E+  + S   +E+ +  LF  
Sbjct: 22  VVLVFGPDTGLVSERASRLVAKASEGDSDPFNLIKIDASELSSDSSRLIDEVLTVPLFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++I+ +++ +  K ++  ++ ++  +    ++++++ +IKK   LRK+ E     +A+ C
Sbjct: 82  RRIVWVKD-AGGKNLVPSVDPVLKLDDWQTLVVLEAGDIKKGVGLRKLIEPHKKAVALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y DN   +  LI+E       +IS+EA+  L + LGGDR+ASR EL+KL  Y ++   I 
Sbjct: 141 YADNDRGIDHLIDEETREAGLTISREARAALHSLLGGDRMASRGELKKLCLYAMQKERID 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKI----YNAIMLADFFL-ASKMPSHALLHGFLQK 257
            + V+ II D       E+I+A   G +    +    L D    AS + + AL H     
Sbjct: 201 TEDVEAIIGDASAFETSELIDAAAGGDLSTLDHGLERLTDAGSKASVIANQALKH----- 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN-KNLVR 307
           FQ L ++ I  +    S ++++      I   ++    + LRIW  K+L R
Sbjct: 256 FQSLHRMRIEIDAGK-SAQQVVDGQRPPIFFSRKPKFSQQLRIWTIKDLER 305


>gi|299133189|ref|ZP_07026384.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2]
 gi|298593326|gb|EFI53526.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2]
          Length = 342

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  V + YG D GL+ E  +    +     +DPFS+V ++  E+  + S   +E  +  L
Sbjct: 19  ARPVILLYGPDAGLVRERADALLASAVDDPNDPFSMVKMDGDELAADPSRLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++ I I   S      +D L ++  K+ C   I+I++ E++ +  LRK  E+  + +
Sbjct: 79  FGGRRAIRIRAGSRNFASGIDTLADMSPKD-CR--IVIEAGELRPDAPLRKACERSRTAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI+CY D +  L  LI+E L     +IS +A+  L+  LGGDR ASRNE++KL+ Y    
Sbjct: 136 AIACYADTERDLARLIDEELRPIGATISSDARAALVGLLGGDRQASRNEIRKLALYAHGA 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
             +T   V  ++ D   L ++ II+    GK   A+M A +
Sbjct: 196 KEVTLADVAAVVTDASALALDPIIDGAFAGKA--AVMEAAY 234


>gi|209883519|ref|YP_002287376.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5]
 gi|209871715|gb|ACI91511.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5]
          Length = 342

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 4/211 (1%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  V + YG D GL+ E  +    +     +DPFS+V ++  E+  + +   +E  +  L
Sbjct: 19  ARPVILLYGPDTGLVRERADALLSSAVADPNDPFSMVKMDGDELAGDPARLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++ I I   S      +D L  +  K+ C  +I+I++ E++ +  LRK  E+  S +
Sbjct: 79  FGGRRAIRIRAGSRNFASAIDTLAGMAPKD-C--MIVIEAGELRPDAPLRKACERSRSAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI+CY D +  L  LI+E L     +I+ +A+  L   LGGDR ASRNE++KL+ Y    
Sbjct: 136 AIACYTDTERDLARLIDEELRANGTTIAADARAALTGLLGGDRQASRNEIRKLALYTHGA 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229
             +T   V  ++ D   L ++ II+    G+
Sbjct: 196 KEVTLADVAAVVTDASALALDPIIDGAFAGR 226


>gi|118591436|ref|ZP_01548834.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614]
 gi|118436108|gb|EAV42751.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614]
          Length = 346

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 158/331 (47%), Gaps = 4/331 (1%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           I +   N   +  V + +G D GL+ E   +     S    DPF+LV L+A ++  + + 
Sbjct: 9   IDRFVANPPEAGGVVLIFGPDTGLVSERAARLVNKASEGESDPFNLVKLDASDLGSDPNR 68

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             +E+ +  LF  ++I+ +++ S+ + +   +E ++ ++    +++++  +IKK   LRK
Sbjct: 69  LIDEVLTVPLFGGRRIVWVKDASS-RNLNPAVEPVLKQDDWQTLVVLEGGDIKKGVGLRK 127

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + E     +A+ CY DN   +  LI+E       S+++EA+  L + LGGDR+ASR EL+
Sbjct: 128 LIEPHKRAVALPCYADNDRGIDQLIDEETREAGLSVTREARAALHSLLGGDRMASRGELK 187

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y L    I    V+ II D     + E+I+A   G +       +    +   +  
Sbjct: 188 KLCLYALNKGRIDSDDVEAIIGDASAFEMSELIDAAASGDLALLDHGLERLAEAGSKASV 247

Query: 250 LLHGFLQKFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           + +  L+ FQ L ++ I I++  N   + ++      I   ++    + LRIW+   +  
Sbjct: 248 IANQTLKHFQHLHRMRIDIEQGKNA--QAVVDGQRPPIFFSRKPRFTQQLRIWSLTDLER 305

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            +  +     ++R    L   ++ + +L + 
Sbjct: 306 AMDILSEATRISRLNDALGVPVLSEALLKLG 336


>gi|146337358|ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizobium sp. ORS278]
 gi|146190164|emb|CAL74156.1| conserved hypothetical protein; putative DNA polymerase III, delta
           subunit [Bradyrhizobium sp. ORS278]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 2/210 (0%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + YG D GL+ E       +      DPFS+V L+  E+    S   +E  +  L
Sbjct: 19  ARPLILLYGPDAGLVRERAEALIASAVDNPDDPFSVVRLDGDELAAEPSRLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F  ++ I +   S  +     +E +   N+ +  I+I++ +I+ ++ LRKI EK  + +A
Sbjct: 79  FGGRRAIRVRAGS--RIFASGVETLSQMNVRDCRIVIEAGDIRPDSPLRKICEKAATAVA 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I CYPD +  L  LI++ L      ++ +A+  L+A LGGDR ASRNE++KL+ +   + 
Sbjct: 137 IGCYPDTERDLARLIDDELRTANLRMAPDARSYLMALLGGDRQASRNEIRKLTLFAHGEG 196

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGK 229
            +T  HV  ++ D   + ++ I++    GK
Sbjct: 197 EVTLDHVMAVVADASEMKLDPIVDGAFGGK 226


>gi|91974914|ref|YP_567573.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB5]
 gi|91681370|gb|ABE37672.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 342

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 2/210 (0%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + YG D GL+ E  +    +     +DPF+LV L+  E+    S   +E  S  +
Sbjct: 19  ARPIILLYGPDSGLVRERADALIASALDDPNDPFALVRLDGDELASEPSRLVDEAMSIPM 78

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F  ++ I +   +  +  +  +E +         ++I++ +IK +N LRK  EK  S +A
Sbjct: 79  FGGRRAIRVR--AGSRSFVAGVETLAASPPRECRVVIEAGDIKPDNALRKACEKAPSAVA 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I CYPD +  L  LI++ L      I ++A+ +L+  LGGDR ASRNE++KL+ Y     
Sbjct: 137 IGCYPDAEADLARLIDDELRHSNLQIGRDARAVLMTLLGGDRQASRNEVRKLALYAHGQS 196

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGK 229
            IT   V   + D   L ++ I++A   GK
Sbjct: 197 EITLDDVMACVSDASDLKLDVIVDAAFSGK 226


>gi|85714100|ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
 gi|85699226|gb|EAQ37094.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
          Length = 342

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + YG D GLI E  N    +     +DPFSLV L+  ++    S   +E  +  L
Sbjct: 19  ARPIILLYGPDAGLIRERANALMSSAVDDPNDPFSLVRLDGDDLSAEPSRLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++ I I+  S      +D L +  I++ C   I+I++ E+K  + LRK  E+  + +
Sbjct: 79  FGGRRAIRIKAGSRSFASGVDALADSTIQD-CR--IVIEAGELKPESPLRKACERAKNAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI+CYPD +  L  LI+E     +   + +A+  L++ LGGDR ASRNEL+K++ Y    
Sbjct: 136 AIACYPDTERDLARLIDEEFRASKLKTAPDARAALISLLGGDRQASRNELRKIALYTHGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
             IT   V  ++ D     ++ +I+A   G+   A++ A+F
Sbjct: 196 GEITLVDVMAVVSDASDFKLDPVIDAAFAGQ--PAVVEAEF 234


>gi|316931730|ref|YP_004106712.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris DX-1]
 gi|315599444|gb|ADU41979.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris DX-1]
          Length = 343

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 3/208 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E  +           DPF+LV L+  E+    S   +E  +  +F  
Sbjct: 22  IVLLYGPDAGLVRERADALIAASLDDAKDPFALVRLDGDELASEPSRLVDEALAIPMFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VLAIS 141
           ++ I +   S  +  +  +E +I        ++I++ +IK +N LRK+ EK T+  +AI 
Sbjct: 82  RRAIRVRAGS--RSFVAGVEALIASPPKECRVVIEAGDIKPDNALRKVCEKATTGAVAIG 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CYPD +  +  LI++ L      I K+AK +L   LGGDR ASRNEL+KL+ Y      +
Sbjct: 140 CYPDAEADIARLIDDELRGSSLQIGKDAKAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229
           T   V   + D   L ++ I++A   GK
Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227


>gi|75674292|ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter winogradskyi Nb-255]
 gi|74419162|gb|ABA03361.1| DNA polymerase III, delta subunit [Nitrobacter winogradskyi Nb-255]
          Length = 342

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 4/211 (1%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + YG D GL+ E  N    +     +DPFSLV L+  ++    S   +E  +  L
Sbjct: 19  ARPIILLYGPDAGLVRERANALISSAVEDPNDPFSLVRLDGDDLAAEPSRLVDEAMTVPL 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
              ++ I I+  S      +D L    I++ C   I+I++ E++  + LRK  E+  + +
Sbjct: 79  LGGRRAIRIKAGSRSFASGVDTLANSTIQD-CR--IVIEAGELRPESPLRKACERAKNAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI+CYPD +  L  LI+E L      I+ +A+  L++ LGGDR ASRNEL+K++ Y    
Sbjct: 136 AIACYPDTERDLARLIDEELRASDLKIAPDARAALMSLLGGDRQASRNELRKIALYAHGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGK 229
             IT   V  ++ D     ++ +I+A   G+
Sbjct: 196 GEITLLDVMAVVSDASDFKLDPVIDAAFAGR 226


>gi|170750489|ref|YP_001756749.1| DNA polymerase III subunit delta [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657011|gb|ACB26066.1| DNA polymerase III, delta subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 345

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 4/209 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GL+ E   +  ++      DPF+LV ++   +  +     +E  +  LF  
Sbjct: 23  VILVFGPDTGLVTERARKLAEDFVDDPADPFALVRIDGDALAADPGRLCDEAGTMGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I +   +  +     +E ++   + +  I++++ ++ KNN LR + E+    LAI C
Sbjct: 83  RRSIWVRPGT--RNYAPAVEAVLGATVADARIVVEAGDLAKNNPLRALCERSPKALAIPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDIL 200
           Y D++  L DLIE +L      I + A+++L  +LGGDR AS  E++KL+ Y     D  
Sbjct: 141 YADDERTLSDLIERTLQERGLRIDRAAREVLARSLGGDRRASLMEIEKLALYAAGEGDKT 200

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGK 229
           +T +HV+ +  D     +  +I+A   G+
Sbjct: 201 VTLEHVEAVTSDVAASVLNTLIDAAFDGR 229


>gi|192288723|ref|YP_001989328.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris TIE-1]
 gi|192282472|gb|ACE98852.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 343

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E  +           DPF+LV L+  E+    S   +E  +  +F  
Sbjct: 22  IVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDELAAEPSRLVDEALAIPMFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAIS 141
           ++ I +   S  +  +  +E +I        I+I++ +IK +N LRK  EK  T  +AI 
Sbjct: 82  RRAIRVRAGS--RSFVAGVEALITSPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIG 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CYPD +  +  LI++ L      I+K+A+ +L   LGGDR ASRNEL+KL+ Y      +
Sbjct: 140 CYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229
           T   V   + D   L ++ I++A   GK
Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227


>gi|39933366|ref|NP_945642.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           CGA009]
 gi|39652991|emb|CAE25733.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 343

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E  +           DPF+LV L+  E+    S   +E  +  +F  
Sbjct: 22  IVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDELSAEPSRLVDEALAIPMFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TSVLAIS 141
           ++ I +   S  +  +  +E +I        I+I++ +IK +N LRK  EK  T  +AI 
Sbjct: 82  RRAIRVRAGS--RSFVAGVEALIASPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIG 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CYPD +  +  LI++ L      I+K+A+ +L   LGGDR ASRNEL+KL+ Y      +
Sbjct: 140 CYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEV 199

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGK 229
           T   V   + D   L ++ I++A   GK
Sbjct: 200 TLDDVITCVSDASDLKLDAIVDAAFSGK 227


>gi|92115732|ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14]
 gi|91798626|gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14]
          Length = 342

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E  +    +      DPFSLV L+  ++    S   +E  +  LF  
Sbjct: 22  IILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGDDLATEPSRLVDEAMTVPLFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I ++  +  +     +E +    I +  I+I++ E++    LRK  E+  + +AI+C
Sbjct: 82  RRAIRVK--AGTRNFAGGIETLADSAIQDCRIVIEAGELRPEAPLRKACERAKNAVAIAC 139

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD +  L  LI++ L +    I+ +A+  L++ LGGDR ASRNEL+K++ Y      I 
Sbjct: 140 YPDTERDLARLIDDELRLSNLKIAPDARATLMSLLGGDRQASRNELRKIALYAHGQREIA 199

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229
              V  ++ D     ++ I++A   G+
Sbjct: 200 LDDVMAVVSDASDFKLDPIVDAAFAGQ 226


>gi|300024792|ref|YP_003757403.1| DNA polymerase III subunit delta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526613|gb|ADJ25082.1| DNA polymerase III, delta subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 347

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 160/328 (48%), Gaps = 19/328 (5%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  I++H+   F++     L  +    +F+GSD GL+ E      + ++   + P  ++ 
Sbjct: 1   MVAIKAHQAESFMKSPPAQLAAA----LFFGSDPGLVSERSTVLARTLAARENPPGEILR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  E+ ++      E+    +F+ ++I+        +++   L + I+ +    ++I++
Sbjct: 57  LDDSELDEDTGRLETELQMRPMFASRRIV---RAIAGRRISAQLLKPILSSPFEGLLIVE 113

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +  +K ++TLR + EK  +  A++CYPD    +  LI E L     SI  +A+ +L + L
Sbjct: 114 AGNLKTDDTLRALFEKTENCFAVACYPDAAADIDGLIAEVLSSFSLSIEGDARALLQSRL 173

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G DR  SR E++KL+ + L   +IT + V++++ D   L +E I  A  +G+   A+   
Sbjct: 174 GADRALSRAEIEKLALHSLGKQMITLEDVENVVGDAADLALERIAEAAAEGRTATAMTDF 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM----KRNI 293
              LA+   + A++    Q++ L  K+H ++  S++   + +    K + P     +R+ 
Sbjct: 234 GRALAAGESAQAIIL-VTQRYFL--KLHKVR--SDVDAGQRLDDALKAVRPPIFFKQRDA 288

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLAR 321
               +R W +  + + L +I      AR
Sbjct: 289 FARQIRNWPRPQLDQALRRIAETAKSAR 316


>gi|220921034|ref|YP_002496335.1| DNA polymerase III subunit delta [Methylobacterium nodulans ORS
           2060]
 gi|219945640|gb|ACL56032.1| DNA polymerase III, delta subunit [Methylobacterium nodulans ORS
           2060]
          Length = 342

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ E   +  ++      DPF+LV L+   +  +     +E  +  LF  
Sbjct: 23  VILVYGPDTGLVAERARRLAESAVADPSDPFALVKLDGDTLAGDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I +   S  +     +E ++   +    I++++ ++ K+  LR + E+    LA+ C
Sbjct: 83  QRAIWVRPGS--RNYAPAVEAVLKAELAATRIVVEAGDLAKSAPLRALCERSQRALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD+   L +LI+  L      I+++A+++ +A+LGGDR AS  E++KL+ Y      IT
Sbjct: 141 YPDDARTLAELIDSRLQDEGLRIARDAREVFVASLGGDRRASLGEIEKLALYARGRGEIT 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229
            + V+ I  D     +  +I+A   G+
Sbjct: 201 LEDVEAIASDVSGSALNALIDAAFAGQ 227


>gi|170739701|ref|YP_001768356.1| DNA polymerase III subunit delta [Methylobacterium sp. 4-46]
 gi|168193975|gb|ACA15922.1| DNA polymerase III, delta subunit [Methylobacterium sp. 4-46]
          Length = 342

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ E      +       DPF+LV ++   +  +     +E  +  LF  
Sbjct: 23  VILVYGPDTGLVAERARSLAEGAVADPSDPFALVKIDGDVLAGDPGRLLDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I +   S  + +   +E ++   +    +++++ ++ K+  LR + E+    LA+ C
Sbjct: 83  QRAIWVRPGS--RPIAPAVEALLKAELPAARVVVEAGDLAKSAPLRVLCERSPRALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD+   L DLI+  L      I+++A++ L A+LGGDR AS  E++KL+ Y      I+
Sbjct: 141 YPDDARTLADLIDARLQAEGLRIARDARETLAASLGGDRRASLGEIEKLALYARGQREIS 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + V+ +  D     +  +I+A   G+   A
Sbjct: 201 LEDVEAVASDVSGSVLNALIDAAFAGQAGEA 231


>gi|328541705|ref|YP_004301814.1| DNA polymerase III, delta subunit [polymorphum gilvum SL003B-26A1]
 gi|326411457|gb|ADZ68520.1| DNA polymerase III, delta subunit [Polymorphum gilvum SL003B-26A1]
          Length = 347

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 151/331 (45%), Gaps = 12/331 (3%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D GL+ E      ++ S    DPFSL  L+A ++  +     +E  +  LF  ++
Sbjct: 24  LVYGPDTGLVSERAQALVESASDGSDDPFSLARLDAADLASDPDRLIDEALTVPLFGGRR 83

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +I + + +  + ++  +  ++    C   ++I++ ++KK   LRK+ E     +A+ CY 
Sbjct: 84  VIWVRD-AGGRNLVPAVAPLLKLADCPAFVVIEAGDLKKGTGLRKLFEADRRAVALPCYA 142

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           D    +  LI+E   +   +IS+EA+  L   LG DR+ASR EL+KL  Y      I   
Sbjct: 143 DTGRDIDYLIDEETRLAGLTISREARAALHGLLGADRMASRGELRKLCLYAHGRQRIDTD 202

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAI-----MLADFFLASKMPSHALLHGFLQKFQ 259
            +  II D     + E+I+A   G +         + A+   AS +   AL+H     FQ
Sbjct: 203 DIAAIIGDASAFEMSELIDAAAGGDLAALDHGLERLEAEGGNASVIAGQALVH-----FQ 257

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L ++    +    +  +I+      +   ++  L   +++W+   + + + ++   +  
Sbjct: 258 GLHRMRAEFDAGTPA-AQIVDAARPPVFFKRKAALARQIQLWSAADLDKAMERLAEAMRT 316

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350
           AR    +   ++ + +L +A+ A    +  +
Sbjct: 317 ARLNDRIGMPVLSEALLTLARVARARGSARR 347


>gi|323137157|ref|ZP_08072236.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242]
 gi|322397515|gb|EFY00038.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242]
          Length = 339

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 135/306 (44%), Gaps = 26/306 (8%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQ 64
           + KF+      +FL    F+ +GSD G++ E  +    K +     DPF  V ++   + 
Sbjct: 9   AEKFVSAPPDGVFL----FLVFGSDAGMVRERALTIVSKRVD-DRRDPFQFVEMSGDAVS 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            +     +E N+T LF  ++ IL+E  +  K V+  +  +I        +++ +  +K++
Sbjct: 64  ADPLALLDEANTTPLFGGRRAILVE--TGAKSVIPAVTSLISAPPAACTVVLTAGALKRD 121

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LRK+ E       I C PD +  L  LI+ +L         EA+ +LLA LG DR+ S
Sbjct: 122 APLRKLVEGAKQGAGIECQPDTEHDLHALIDRTLREAGLVAGPEARGLLLAALGEDRLMS 181

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R EL KL+ Y      +    V+ I+     +  + ++ A   G++     L  +F    
Sbjct: 182 RGELTKLALYMHGREHVEAADVEAIVAHASGVASDRVVTAAFGGEV--GATLESYFAQGG 239

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP--------MKRNILQE 296
            P  A+L G ++    L +       + ++ E+   +T+  +          M R +L+E
Sbjct: 240 DPG-AILFGAMRYAVALHR-------ARLAMEREGGRTDAGVTVLMRAGFGFMHRALLEE 291

Query: 297 SLRIWN 302
            L+ W 
Sbjct: 292 HLKRWT 297


>gi|315122026|ref|YP_004062515.1| DNA polymerase III subunit delta [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495428|gb|ADR52027.1| DNA polymerase III subunit delta [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 86

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 64/86 (74%)

Query: 1  MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
          M  I S++F +KS   L  S+FVFIFYGSDKGLIFEL+NQFKK I + +HD F  VVLNA
Sbjct: 1  MVAIRSNEFTKKSIDQLLTSYFVFIFYGSDKGLIFELVNQFKKRIGVLHHDQFYFVVLNA 60

Query: 61 LEIQKNISTFWNEINSTSLFSKKKII 86
          L+IQ+N    WNE+ S SLF++KK+ 
Sbjct: 61 LDIQENPEILWNEVKSISLFNEKKLF 86


>gi|83594958|ref|YP_428710.1| DNA polymerase III subunit delta [Rhodospirillum rubrum ATCC 11170]
 gi|83577872|gb|ABC24423.1| DNA polymerase III, delta subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 342

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 118/243 (48%), Gaps = 5/243 (2%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D+GL+ E + Q  + +     DPF +  L+  +++ + +   +E  + +    ++
Sbjct: 23  LVYGPDEGLVRERLEQLARTVVADPKDPFRITDLSGDDLRADPARLADEAAALAFGGGRR 82

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           ++ +  ++ +      L+  +   +   +++++  ++   + LRK+ E  ++  A+ CY 
Sbjct: 83  LVRLRQMTDQHAPR--LKAFVEAPVGEALVLVQGGDLTARSALRKLFEGASAAAALPCYA 140

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           D    L  L+  +L   + + + E    L+ANLGGDR  SR+EL KL +YC +   ++  
Sbjct: 141 DEGRSLETLVRATLAEARLAAAPEVIDYLVANLGGDRGVSRSELAKLVTYCGKATSVSLD 200

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                + D+  + ++ + NA  +G    A+   D      M + ALL G  + F    ++
Sbjct: 201 DALACVGDSAQIGLDMLTNAVAEGDSATALRALDRLGQEGMATVALLRGLTRHFT---RL 257

Query: 265 HII 267
           H++
Sbjct: 258 HLV 260


>gi|296446252|ref|ZP_06888199.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b]
 gi|296256289|gb|EFH03369.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b]
          Length = 343

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 13/302 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +F+      +FL    F+ +G+D GL+ E  +    K +     DPF  + ++   +
Sbjct: 8   EAQRFVDAPPAAIFL----FLLHGADAGLVRERALALIAKRVD-DRRDPFQCIEMSGDAV 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             +  +  +E N+  +F  ++ IL+E  S  K +   LE+++     +  +++ +  +K+
Sbjct: 63  AADPLSLLDEANTVPMFGGRRAILVEAGS--KSINAPLEQLLAAPPRDCAVVVTAGVLKR 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           +  LRK+ E      AI C PD +  L  LI+ESL     + + EA+ +L A LG DR  
Sbjct: 121 DAPLRKLIEPAKLGAAIECQPDAEQDLEALIDESLRAAGLAATPEARMLLRAALGEDRRM 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SR EL KL+ Y   +  +  + V+DI+     +  + ++     G    A    D  LA 
Sbjct: 181 SRAELAKLALYKHGETTVEAKDVEDIVAHASAIASDRLVIDAFSGVAAAAGEELDRALAG 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK---IIQKTEKNIIPMKRNILQESLRI 300
                 LL G L+    L +  +  +      +    I+ ++   + P  R  L+  L+ 
Sbjct: 241 GADPGQLLGGALRYAMALHRARLAADREGGRTDAGVTILMRSGFGVFP--RPALERHLKS 298

Query: 301 WN 302
           W 
Sbjct: 299 WT 300


>gi|23011672|ref|ZP_00051963.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 343

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ ++   +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDTGLVADRATRLVRGMVSDPDDPFALIRIDGDALASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLGRSAPLRTLCEGSARALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YPDDERTLADLIERTLQDDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGTVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VEDVEAIVSDVGASVLNALIDAAFAGRASEA 231


>gi|188580906|ref|YP_001924351.1| DNA polymerase III subunit delta [Methylobacterium populi BJ001]
 gi|179344404|gb|ACB79816.1| DNA polymerase III, delta subunit [Methylobacterium populi BJ001]
          Length = 343

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ ++   +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDTGLVADRAARLVRGMVADPDDPFALIKIDGDTLASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSAKALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VEDVEAIVSDVGASVLNALIDAAFAGRAGEA 231


>gi|115522416|ref|YP_779327.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           BisA53]
 gi|115516363|gb|ABJ04347.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + +G+D GL+ E      K+     HDPF+LV L+  +I    S   +E  +  +
Sbjct: 19  ARPIILLFGADSGLVRERAEALIKSAVDDPHDPFALVRLDGDDIAAEPSRLVDEALTIPM 78

Query: 80  FSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++ I +   S      ++ L E  +K+ C   ++I++ ++K +  LRK  E+  + +
Sbjct: 79  FGGRRAIRVRAGSKSFVSSVEALSESALKD-CR--VVIEAGDLKADAALRKTCERAKNAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I CY D+   +  LI+E L I    ++ +A+ IL A LGGDR +SRNEL+KL+ Y    
Sbjct: 136 TIPCYLDDARAIGSLIDEELRIANLRLAPDARAILAALLGGDRQSSRNELRKLTLYAHGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQG 228
             IT   V   + D   L ++ +++    G
Sbjct: 196 SEITLDDVIACVSDASDLKLDPVVDYAFAG 225


>gi|90421810|ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           BisB18]
 gi|90103824|gb|ABD85861.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 342

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + YG D GL+ E       +      DPFS V L+  E+    S   +E  +  +F  
Sbjct: 22  IILLYGPDAGLVRERAEALIASAVDDPSDPFSTVRLDGDELAAEPSRLVDEAMTIPMFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ I +   +  K  +  +E + +  + +  I+I++ ++K +  LRK  E+  + +AI C
Sbjct: 82  RRAIRVR--AGSKNFVSGVETLALSALKDCRIVIEAGDLKPDAALRKACERAKTAVAIGC 139

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D +  L  L+++        I+ + + +L++ LGGDR ASRNE++KL  Y      +T
Sbjct: 140 YTDGERDLAKLVDDEFRNANLRIAPDVRALLVSLLGGDRQASRNEVRKLVLYTHGQSEVT 199

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK 229
              V  ++ D   L ++ +I+    GK
Sbjct: 200 LDDVMAVVADASELKLDPVIDGAFAGK 226


>gi|240138145|ref|YP_002962617.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens AM1]
 gi|240008114|gb|ACS39340.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens AM1]
          Length = 343

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ ++   +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
              V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231


>gi|254560707|ref|YP_003067802.1| DNA polymerase III subunit delta, holA [Methylobacterium extorquens
           DM4]
 gi|254267985|emb|CAX23853.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens DM4]
          Length = 343

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ ++   +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
              V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231


>gi|114326671|ref|YP_743828.1| DNA polymerase III subunit delta [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314845|gb|ABI60905.1| DNA polymerase III, delta subunit [Granulibacter bethesdensis
           CGDNIH1]
          Length = 351

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 7/284 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + YG D GL+ E      + ++    DPF ++ L A    +  +   NE+   SL   
Sbjct: 21  AVLLYGDDHGLVRERGTSLTRLVAGQIDDPFRVIELAA----EQAADLPNEMAGLSLTGG 76

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I I   +    +     +  ++     ++I+++  +   + LR +AEK  S  +I+C
Sbjct: 77  RRVIRIREAA---DIFAAPLQAGLERQGEALVILEAGTLTPRSKLRVLAEKMASAASIAC 133

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD    L   I++SL   + SI  +A + L  +LG DR  +R E+ KL+ Y  +D   T
Sbjct: 134 YPDEGRSLSQTIQDSLARDRVSIEADALKWLCDHLGADRALTRREIDKLALYVGQDGTAT 193

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            +     I D   L +E+ + A++ G I  A       L+    S A++   LQ  Q L 
Sbjct: 194 IEAAHACIGDLAGLSLEDALYASVIGDISGAERALSLALSEGTTSIAVVRMALQHMQRLR 253

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
           K+  + + +  S  + +++ +  +   +     ++L +W   ++
Sbjct: 254 KLRAVMQENGTSAAEAVRQAKPPVFFKRVPAFTKALTLWRDEML 297


>gi|163851014|ref|YP_001639057.1| DNA polymerase III subunit delta [Methylobacterium extorquens PA1]
 gi|163662619|gb|ABY29986.1| DNA polymerase III, delta subunit [Methylobacterium extorquens PA1]
          Length = 343

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ +    +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIEGDTLASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YPD++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
              V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231


>gi|163796493|ref|ZP_02190453.1| DNA polymerase III [alpha proteobacterium BAL199]
 gi|159178343|gb|EDP62887.1| DNA polymerase III [alpha proteobacterium BAL199]
          Length = 347

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 121/260 (46%), Gaps = 10/260 (3%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F+++    L     V I YG D G + E   +  +++     DPF++ VL+  E +
Sbjct: 7   ELEGFVRQPPAGL---RGVLI-YGPDGGKVRETAERIGRSVVTDLSDPFNVTVLSGDEAE 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  + SL   ++++ + +     +  + L         + +++++++++K  
Sbjct: 63  ADPARVADEAAARSLMGGRRLVRVRD--ARDRTAEALANAFSGPDTDTLVVVEASDLKAG 120

Query: 125 NTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
             LRK+ E K + + AI+CY D+   L  ++ +S       ++ +A Q LL  LG DR+A
Sbjct: 121 TGLRKLFEDKRSDLAAIACYADDARDLARVLRDSFEAAGVRVASDANQFLLERLGSDRMA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLA 242
           +R EL KL+    +  ++  +   + + D   L I+ +I A   G+    +   D  F  
Sbjct: 181 TRTELDKLALMVGQGGVLDLETAMEAVGDGAALEIDSLITAAADGRPEGIVSGLDRAFRQ 240

Query: 243 SKMPSHAL--LHGFLQKFQL 260
            + P   L    G+ Q+  L
Sbjct: 241 GESPIRVLRTAQGYFQRLHL 260


>gi|218682742|ref|ZP_03530343.1| DNA polymerase III subunit delta [Rhizobium etli CIAT 894]
          Length = 212

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 109/201 (54%)

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           S++ I  Y D+   L  LI+  L   +  I+  A+Q L+A +GGDRIASRNE++KL+ YC
Sbjct: 1   SIMTIPSYADDSRALNALIDTELGTEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 60

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                + E HV +II D   + +++ ++A + G +   +       +SK     +L   L
Sbjct: 61  RGYPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNAFLHAMQKISSSKTAIFLVLQACL 120

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++FQLL+ +    E   +   +I+Q   +++   ++ I++++LR W    +    +++  
Sbjct: 121 KQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQALRHWTAESIARESNRLQA 180

Query: 316 RIHLARKKKYLEKNIIFQTIL 336
            I  +R+++ LE ++  QT+L
Sbjct: 181 AILQSRRRQVLEDSVAMQTLL 201


>gi|218529841|ref|YP_002420657.1| DNA polymerase III subunit delta [Methylobacterium chloromethanicum
           CM4]
 gi|218522144|gb|ACK82729.1| DNA polymerase III, delta subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 343

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YG D GL+ +   +  + +     DPF+L+ ++   +  +     +E  +  LF  
Sbjct: 23  VVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDGDTLASDPGRLVDEAGTVGLFGG 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +   S  +     ++ ++        I++++ ++ ++  LR + E     LA+ C
Sbjct: 83  SRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGDLARSAPLRTLCEGSPKALALPC 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D++  L DLIE +L      I ++A+ +L  +LG DR AS +E+ KL+ Y      + 
Sbjct: 141 YTDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRRASLSEIGKLALYARGQGSVG 200

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
              V+ I+ D     +  +I+A   G+   A
Sbjct: 201 VDDVEAIVSDVGASVLNALIDAAFAGRASEA 231


>gi|144900373|emb|CAM77237.1| DNA polymerase III, delta subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 341

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + +G D GL+ E   +  K +    +DPF +  L A  ++ + +   +E  + +L   
Sbjct: 21  AILVFGPDNGLVRERAVKLAKTVLPDLNDPFRVAELTAAALKDDPARLADEAAAMALTGG 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++++ +       L  L +  + N   + ++++++ E+   ++LRK+ E   + +A++
Sbjct: 81  RRVVMVRDAG---DTLSSLFQSFLDNPTGDAMVVVEAGELGPRSSLRKLFEGAANAVALA 137

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
            Y D    L  +I E L +   S   +A   L+ +LGGDR  +R+ELQKL+ Y      I
Sbjct: 138 SYADEGASLQQVIAEELKVSGLSAEADAMSFLMDHLGGDRRLTRSELQKLALYMGGPGRI 197

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           + +     I DT  L ++++  AT  G    A  + D          A+L    + FQ  
Sbjct: 198 SLEDAIACIGDTAALSMDDLSLATADGDHGTAQRVLDRLTREGTSPVAVLRALSRHFQ-- 255

Query: 262 EKIHIIKECSNI--SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            ++H+      +  S ++ +   +  +I    +  +  L  W+     + L ++
Sbjct: 256 -RLHLAAGTMAMGKSADQAMNALKPPVIFKAADRFRRQLSRWSAERAGQALERL 308


>gi|294085218|ref|YP_003551978.1| DNA polymerase III subunit delta [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664793|gb|ADE39894.1| DNA polymerase III, delta subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 344

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 5/212 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            F+F+G+D GLI E       + S    D FS+  L++  I+ ++S   + ++S ++F+ 
Sbjct: 21  AFLFHGNDIGLIHERALALASHYSDNLDDVFSVTRLDSRAIENDVSVIADALSSIAVFAD 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +++L+    TE  V  C   +  ++    +   ++I+++ E    + + K+ E      
Sbjct: 81  TRLVLVRGRGTEL-VEACKLALTPRDNTPPLEGAVLIVEARETTTRHAIVKLFETGDICA 139

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +I CY D+   + DL++ S      +I +    +++A LG DR +SR E++KLS    + 
Sbjct: 140 SIGCYADDSGTIRDLVQTSFAALSINIDRPVMDLIVAKLGADRASSRREIEKLSLMAGQG 199

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             +T Q ++D + D+ VL I+++  A   G I
Sbjct: 200 GTLTAQDIEDALEDSTVLAIDDVAGAVADGDI 231


>gi|209965831|ref|YP_002298746.1| DNA polymerase III subunit delta [Rhodospirillum centenum SW]
 gi|209959297|gb|ACI99933.1| DNA polymerase III, delta subunit, putative [Rhodospirillum
           centenum SW]
          Length = 345

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 153/334 (45%), Gaps = 19/334 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +FYG D GL+ E   Q  + +     DPF +  L + +I  + +   +E+ + +L   
Sbjct: 21  AVLFYGPDSGLVRERAAQLCRTVVEDLSDPFRVAELKSDQIAADPARLHDEMAAIALTGG 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNI--CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           ++++    L   +  L      ++K++   + ++++++ ++ K + LR +AE+  S  AI
Sbjct: 81  RRLV---RLRDAEDALAAALGRLLKDLPAGDSLLVVEAGDLGKASKLRALAEEADSAAAI 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLE 197
           +CY + +  L   +   L     +I  +A+  L  NL GDR+ +RNE+ KL+ Y     +
Sbjct: 138 ACYVEGEEELAGTVARILGEHGLAIDPDARAWLAGNLVGDRVMARNEIDKLALYMASAPK 197

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +T + V+ ++ D+  L +EE   A   G +           A    S ALL    + 
Sbjct: 198 GAKVTLEDVRAVVGDSAALELEEPALAAADGDMAAVDRSLRRLFAEGTASVALLRTAQRH 257

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIP-----MKRNILQESLRIWNKNLVRETLHK 312
           FQ   ++HI    ++++  +  Q+  K++ P     M+   L   +R W   L+++ L +
Sbjct: 258 FQ---RLHIA--VAHVARGQTPQQAVKSLRPPVFFKMEAQ-LTSQVRRWTLPLLQQALTR 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +       ++    ++ I  +    +AQ A +  
Sbjct: 312 LLEAEADCKRTNMPDETICARAFFQLAQLARRGG 345


>gi|83309128|ref|YP_419392.1| DNA polymerase III subunit delta [Magnetospirillum magneticum
           AMB-1]
 gi|82943969|dbj|BAE48833.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 340

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 2/239 (0%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + +G D GL+ E + +  +++     DPF +  L    +++  S   +E  + +L   
Sbjct: 21  AVLVFGPDLGLVRERVQRLIRSVVPDASDPFRVAELTPAALKEVPSRLADEAAAMALGGG 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++ +++ +    +     +   + + + + +++I+  E+   ++LRK+ E   +  A++C
Sbjct: 81  RRAVVLRDAGDGQS--GAVSSFLARPMGDALVVIEGGELGPRSSLRKLFEGADNGAALAC 138

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    L  +I+E L         +A   L  +LGGDR  +R EL KL+ Y      ++
Sbjct: 139 YGDEGGSLAGVIQEELKAAGLMAEPDAMAYLTEHLGGDRRLTRAELGKLALYMGGPGRVS 198

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                  + DT  L ++++  AT  G    A  + D  L        +L    + FQ L
Sbjct: 199 LDDAVACVGDTAALGLDDLALATADGDHAGAQRVLDRLLREGGQPVGMLRSVARHFQRL 257


>gi|23016031|ref|ZP_00055792.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 340

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 8/242 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + +G D GL+ E + +  +++     DPF +  L    ++   S   +E  + +L   
Sbjct: 21  AVLVFGPDLGLVRERVQRLIRSVVPDTSDPFRVAELTPAALKDIPSRLADEAAAMALGGG 80

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++++ +    +     +   + + + + +++I+  E+   ++LRK+ E   +  A++C
Sbjct: 81  RRVVVLRDAGDGQS--GAVSSFLARPMGDALVVIEGGELGPRSSLRKLFEGADNAAALAC 138

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D    L  +I+E L         +A   L  +LGGDR  +R EL KL+ Y      + 
Sbjct: 139 YGDEGGSLAGVIQEELKSAGLMAEPDAMAYLTEHLGGDRRLTRAELGKLALYMGGPGRV- 197

Query: 203 EQHVKDIIC---DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             H++D +    DT  L ++++  +T  G    A  + D  L        +L    + FQ
Sbjct: 198 --HLEDAVACVGDTAALGLDDLALSTADGDHAGAQRVLDRLLREGSQPVGMLRSVARHFQ 255

Query: 260 LL 261
            L
Sbjct: 256 RL 257


>gi|83944974|ref|ZP_00957340.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851756|gb|EAP89611.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 348

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 119/256 (46%), Gaps = 12/256 (4%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S+ V++ YG D G++ E  +   K +     DPFS+  L   +I+ + +   + + + SL
Sbjct: 18  SYTVYLIYGPDGGMVRERADTLSKALVKDPDDPFSVTRLTDEDIKADPAALADALAALSL 77

Query: 80  FSKKKII---LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
               +++   L  + +   K++  ++E +  +     ++I+S ++KK + LRK AE    
Sbjct: 78  TRDPRLVRLRLSGDSAPVAKLIAEVDEGVTPS--EATLVIESGDLKKTSKLRKAAEDGKR 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC- 195
            LA  CY D    L+ L E+       ++  EA+ +L   L GDR  +R+E+ KL  Y  
Sbjct: 136 TLAAPCYADTARDLITLAEDMFRAEHLTLEPEARAMLAPFLEGDRALARSEIDKLILYKG 195

Query: 196 ------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
                  +D +IT Q + DI        +++I++  + G I  A       L++ +    
Sbjct: 196 LADQREGQDDVITRQDIADISAVGSEAAMDQILDPALGGDIRAADAAYARGLSAGLNPVG 255

Query: 250 LLHGFLQKFQLLEKIH 265
           +L G  ++    +  H
Sbjct: 256 VLRGLQRRIDQFDTFH 271


>gi|329113641|ref|ZP_08242419.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001]
 gi|326697048|gb|EGE48711.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001]
          Length = 337

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 122/280 (43%), Gaps = 8/280 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G D GLI E        I+ +  DPF + VL+    ++       E  + SL   
Sbjct: 20  ILLLHGEDTGLIKERAQDAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSLMGG 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + + S    VL  LE  + ++  + +II+++  +   + LR   EK  +  +I C
Sbjct: 76  RRVVRVRDAS--DTVLKPLEAFLAQS-SDTLIILEAPGLSSRSKLRNFLEKHANCASIGC 132

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YP+   +L   I   L   +  I+ +A   L + LG DR A+R+E++KL  Y  +   +T
Sbjct: 133 YPEEGRNLESSITHMLTEHKVRIASDALHWLTSRLGADRAAARSEIEKLCLYAGDSGSLT 192

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              V+  I D   + +E+   A  +G    A    +  LA      A+   FL     L 
Sbjct: 193 LDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLHRLR 252

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           ++      + +S    ++     +   +     ++L +W+
Sbjct: 253 RVRAAM-AAGVSRSDAVKALRPPVFFKRTASFNKALELWS 291


>gi|148261040|ref|YP_001235167.1| DNA polymerase III subunit delta [Acidiphilium cryptum JF-5]
 gi|326404439|ref|YP_004284521.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301]
 gi|146402721|gb|ABQ31248.1| DNA polymerase III, delta subunit [Acidiphilium cryptum JF-5]
 gi|325051301|dbj|BAJ81639.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301]
          Length = 334

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           + FV + YG D  L+ E   +  K ++ +  DPF L  L+A   ++       E  + + 
Sbjct: 18  ARFVLV-YGPDTSLVAERARRLAKLVAGSLDDPFRLTELDADTAER----LPEEAGAQAF 72

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++L+ + + +++V     E  ++   + +I+    ++   + LR +AEK     A
Sbjct: 73  GGGRRVVLLRD-AGDRQVAPV--EAALEGKGDALIVAIGGDLPGRSKLRALAEKHAEAAA 129

Query: 140 ISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+CY PD        +E +L      I +EA  +  + LGG+  A R+  ++L+ Y   +
Sbjct: 130 IACYLPDGAAR-GPALEAALRAAGVGIGREALALAASRLGGETGALRDAAERLALYAGPN 188

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
             +  + V+ ++ D     +++ I+A + G +  A
Sbjct: 189 GAVDIEAVEAVLDDQGSASMQDAIDAALAGDVKAA 223


>gi|114571498|ref|YP_758178.1| DNA polymerase III subunit delta [Maricaulis maris MCS10]
 gi|114341960|gb|ABI67240.1| DNA polymerase III, delta subunit [Maricaulis maris MCS10]
          Length = 350

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 16/241 (6%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           S +      KN   S   ++ YG D+GL  E      + I     DPF+L  L   +++ 
Sbjct: 4   SAREADARVKNPDPSIRAYLIYGPDRGLTHERAQTLVRAILEDPDDPFALTQLTEEDLKS 63

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI------CNHIIIIKSN 119
           + +   + + + SL   K+++ +  L+ E      +E  IIK +         +++++S 
Sbjct: 64  DPAGLADAMAALSLTGGKRLVRV-RLTGETGSGPIIE--IIKGLESGSETAEAVLLVESG 120

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           ++     LRK  E     + I+CY D    L  L E  L +    +++EA+   L  L G
Sbjct: 121 DLTPRGKLRKAFEPAKKAITIACYADTSHSLESLCESMLKVEGLQLAREARTEWLPRLEG 180

Query: 180 DRIASRNELQKL-------SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           DR  +R E++KL       S     D  IT + V+ +  D     ++ ++  T+ G +  
Sbjct: 181 DRALARGEIEKLILYKGLRSQRAEGDDTITREDVEAVAADQGEAQLDAVLAPTLLGLLAK 240

Query: 233 A 233
           A
Sbjct: 241 A 241


>gi|258543601|ref|YP_003189034.1| DNA polymerase III subunit delta [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634679|dbj|BAI00655.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637735|dbj|BAI03704.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640789|dbj|BAI06751.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643844|dbj|BAI09799.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646899|dbj|BAI12847.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649952|dbj|BAI15893.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652942|dbj|BAI18876.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655996|dbj|BAI21923.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 337

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 8/280 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G D GLI E        I+ +  DPF + VL+    ++       E  + SL   
Sbjct: 20  ILLLHGEDTGLIKERAQNAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSLMGG 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + + S    +L  LE  + +N  + ++I+++  +   + LR   EK  +  +I C
Sbjct: 76  RRVVRVRDAS--DALLKPLEAFLAQN-SDTLVILEAPGLSSRSKLRGFLEKHPNCASIGC 132

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YP+   +L   I   L      I  +A   L + LG DR A+R+E++KL  Y  +   +T
Sbjct: 133 YPEEGRNLESSITRMLAEHNVRIDSDALHWLTSRLGADRAAARSEIEKLCLYAGDTGNLT 192

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              V+  I D   + +E+   A  +G    A    +  LA      A+   FL     L 
Sbjct: 193 LDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLHRLR 252

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           ++      + +S  + ++     +   +      +L +W+
Sbjct: 253 RVRAAM-AAGVSRSEAVKALRPPVFFKRTASFNRALELWS 291


>gi|330993122|ref|ZP_08317060.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1]
 gi|329759892|gb|EGG76398.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1]
          Length = 340

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 124/284 (43%), Gaps = 10/284 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GLI E      K I    HDPF + +L     + + +    E+ + SL   
Sbjct: 20  VIMLHGDDVGLIRERATTAAKAICPDLHDPFRVAMLG----RADHARLEEEMTALSLTGG 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I +    T++ +L+ L+  + +   + ++I+++  +   + LR   EK      I C
Sbjct: 76  RRVIWLRE-GTDEGLLEALKRGLAQQ-SDALVIVEAPGLDSRSRLRGFVEKDAQCALIGC 133

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YP+    L   I + L      I  +A   ++   G DR A+R+E++KL+ +      + 
Sbjct: 134 YPEEGRALEGAIRQMLAAQDVGIDPDALGWMVERAGPDRAATRSEVEKLALFAGRGGRLG 193

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA--SKMPSHALLHGFLQKFQL 260
            + V+  + D   + +E+   A + G+   A   A   L      PS+ L    +     
Sbjct: 194 LEDVRACVGDAAGVSMEDAAFAAMAGQRREADAAAQRALTVDGSSPSN-LTRALMSHIHR 252

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           L +  +  + + +S    +++ +  +   + +   ++L +W  +
Sbjct: 253 LRRARLAMD-AGMSRADAMRQLQPPVFFKRTDSFGQALGLWPAD 295


>gi|288959463|ref|YP_003449804.1| DNA polymerase III subunit delta [Azospirillum sp. B510]
 gi|288911771|dbj|BAI73260.1| DNA polymerase III subunit delta [Azospirillum sp. B510]
          Length = 341

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 129/296 (43%), Gaps = 16/296 (5%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D GL+ +      K +     DPF +       +  + +   +E  + S    ++
Sbjct: 23  LLYGPDSGLVRDRAQTLGKTVVPDLSDPFRVAEFLGRALADDPARLADEAAAISFTGGRR 82

Query: 85  IILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           +I + +             E +     + ++++++ ++   + LR + E   +  AI CY
Sbjct: 83  LIRVRDAEDNCAAAFTAFLESLPPG--DSLVVVEAGDLSARSKLRLLFEGDDAAAAIPCY 140

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            + +  L  +I + L     +   +    L ANL GDR+ +R E++KL+ Y  +D  +  
Sbjct: 141 VEEEASLGRVIADILQGHGLTADPDVLGFLAANLVGDRMVARGEVEKLALYMGKDKRVRL 200

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYN-AIMLADFFLASKMPSHALLHGFLQKFQLLE 262
           +  +  I D+  L ++E + A  +G        LA  F     P   +L G  + FQ L+
Sbjct: 201 EDAQACIGDSAALSMDEPVWAAAEGDFATLDRSLARLFAEGTSPVP-ILRGAQRHFQRLQ 259

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIP-----MKRNILQESLRIWNKNLVRETLHKI 313
            +     C  ++  K  +   +++ P     +K  +++++ R W+ N VR+ L ++
Sbjct: 260 LL-----CVQVAAGKSPEAAVESLRPPVFFKLKTRLVKQA-RHWSSNHVRQALERL 309


>gi|218660469|ref|ZP_03516399.1| DNA polymerase III subunit delta [Rhizobium etli IE4771]
          Length = 178

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%)

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +V+ +  Y D+   L  LI+  L   +  I+  A+Q L+A +GGDRIASRNE++KL+ YC
Sbjct: 6   AVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 65

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                + E HV +II D   + +++ ++A + G +   +       +SK     +L   L
Sbjct: 66  RGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFLVLQACL 125

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           ++FQLL+ +    E   +   +++Q   +++   ++ IL++ 
Sbjct: 126 KQFQLLDTMRAEMEEKRLQAPQVMQTMGRHLHFRRKPILEQG 167


>gi|295691569|ref|YP_003595262.1| DNA polymerase III subunit delta [Caulobacter segnis ATCC 21756]
 gi|295433472|gb|ADG12644.1| DNA polymerase III, delta subunit [Caulobacter segnis ATCC 21756]
          Length = 350

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 97/192 (50%), Gaps = 11/192 (5%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            +F+++ T ++       + YG D+G++ +  N   K +     DPF    L   +++ +
Sbjct: 10  ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALAKRVVERPDDPFDTAQLTESDVEAD 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120
            +   +E+++ SL   ++++ +  L+ EK   D    E + +++  H+      +I++  
Sbjct: 66  PAKLEDELSAMSLMGGRRLVRL-RLNGEKAGPDKAAAEAVTRHVEGHLNPDAFFLIEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK +    I CY D    L  L  ++L   + S++ EA  + ++ L  +
Sbjct: 125 LGRDSQLRKVGEKASGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALDLFVSRLPKE 184

Query: 181 RIASRNELQKLS 192
           R  +R E+++L+
Sbjct: 185 RGVARAEIERLA 196


>gi|312115575|ref|YP_004013171.1| DNA polymerase III subunit delta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220704|gb|ADP72072.1| DNA polymerase III, delta subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 344

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 143/321 (44%), Gaps = 7/321 (2%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+FYGSD   I        + +         L  L+  ++  +      E+ + SLF   
Sbjct: 23  FLFYGSDALQIAARAEALSRALLKKLGPDAELARLHDTDLAADPDRVIVELTTRSLFGGT 82

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           +I+ + +L  + + +  +++ I +      +I ++ ++KK++ L +  E    + AI+CY
Sbjct: 83  RIVWLTSLPAKAQAI--VQDAIARPFDGAFLIAQAPDMKKSHKLAQSFEAAPYLAAIACY 140

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            +++  ++  I          I  EA  ++ A      + +R E +KL +Y  ED  IT 
Sbjct: 141 GEDRDSVVAGIRHQAAEAGYEIDGEAAALVAARCDCSALLARAETEKLITYAGEDRCITA 200

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+D + D     + +I++A + G    AI+  + ++A++     +   F+     L +
Sbjct: 201 AQVEDCLNDQQTAGLSDIVDAALDGDGRKAILAFERYMAAEANVSPV---FVVLASSLLR 257

Query: 264 IHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           +H ++    +  S  + I++    +   +++ L   +R W    +   L  ++  +   R
Sbjct: 258 LHALRAAVDAGASPMQAIKELRPPVFFKQQDALAAQVRKWTVPALAARLGDLNAALRDTR 317

Query: 322 KKKYLEKNIIFQTILYIAQTA 342
            K  L ++I  + +L +A+ A
Sbjct: 318 LKPALAEDIAARFLLTVAKEA 338


>gi|58038887|ref|YP_190851.1| DNA polymerase III subunit delta [Gluconobacter oxydans 621H]
 gi|58001301|gb|AAW60195.1| DNA polymerase III, delta subunit [Gluconobacter oxydans 621H]
          Length = 334

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 11/230 (4%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S    + +G D GLI E   Q  + ++ T  DPF +  L+  E Q  +     E  + SL
Sbjct: 18  SWRAIVLHGEDTGLIRERAAQAVRLVAGTTDDPFQVAQLD-RETQDRLE---EEATALSL 73

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++ +      +  L  L + +++     +I+I++  I   + LR +AE    V +
Sbjct: 74  IGGRRVVWVRE---GQDSLAPLFKRVLETDTETLIVIEAPGITARSKLRALAEAHKQVAS 130

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+CYP+    L   + ++L     +I ++A   L   LG DR   R E++KL  Y  E+ 
Sbjct: 131 IACYPEEGRALSQTVTDALGQAGVTIDRDALIWLTGVLGSDRSGVRGEIEKLVLYAGENG 190

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            +  Q V+D + D     +E+   + + G      M+AD  L   +   A
Sbjct: 191 RLDLQAVQDCVGDAGGNSLEDAAFSALCGN----RMMADQALERALADGA 236


>gi|91762513|ref|ZP_01264478.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718315|gb|EAS84965.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 331

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 164/349 (46%), Gaps = 50/349 (14%)

Query: 19  LSHFVF-IFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
           L ++ F +FYG ++GL  E I N F++N     H           EI  +I+ F+N + +
Sbjct: 13  LDNYKFHLFYGENEGLKEENIKNLFEENYKDKIH------RYEEKEILDDINIFFNSVLT 66

Query: 77  TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
            S F  +K+I+I N +T+K +   +EE+I KN  +  II+ S  ++K +TLRK  EK  S
Sbjct: 67  KSFFDNEKLIII-NRATDK-IKTIIEELIEKNPEDIKIILNSKNLEKKSTLRKFFEKEKS 124

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSY 194
           ++ +  Y DN   L  +I  SL    K   IS++   +L+    GDR    NEL+K+ ++
Sbjct: 125 IVCVPFYEDNNQTLNSII--SLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENF 182

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA------------ 242
            L               +   L I+EII  T     Y+A  L D  LA            
Sbjct: 183 SL---------------NKKNLNIQEIIKLTNLADNYSASELVDHSLAKNTRKTVTILSE 227

Query: 243 ---SKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              S   +  ++   L K + L KI+ +I E +NI  E+ I   +  I    + ++ + +
Sbjct: 228 NNYSDEDNIIIIRTLLAKLKRLVKIYDLIDEKNNI--EQAISACKPPIFWKDKPLVTQQV 285

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           R W K+ + + ++K +    L +K   L KNI+     +I   + K NN
Sbjct: 286 RSWKKDGLEQLIYKTNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331


>gi|16127981|ref|NP_422545.1| DNA polymerase III subunit delta [Caulobacter crescentus CB15]
 gi|13425525|gb|AAK25713.1| hypothetical protein CC_3751 [Caulobacter crescentus CB15]
          Length = 350

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 97/194 (50%), Gaps = 11/194 (5%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            +F+++ T ++       + YG D+G++ +  N   + +     DPF    L   ++  +
Sbjct: 10  ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDAD 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120
            +   +E+++ SL   ++++ +  LS++K   D    E + +++   +      ++++  
Sbjct: 66  PAKLEDELSAMSLMGGRRLVRL-RLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK      I CY D    L  L  ++L   + S++ EA ++ ++ L  +
Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSRLPKE 184

Query: 181 RIASRNELQKLSSY 194
           R  +R E+++L+ Y
Sbjct: 185 RGVARAEIERLALY 198


>gi|221236803|ref|YP_002519240.1| DNA polymerase III subunit delta [Caulobacter crescentus NA1000]
 gi|220965976|gb|ACL97332.1| DNA polymerase III, delta subunit [Caulobacter crescentus NA1000]
          Length = 350

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 97/194 (50%), Gaps = 11/194 (5%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            +F+++ T ++       + YG D+G++ +  N   + +     DPF    L   ++  +
Sbjct: 10  ERFLKEPTPDIR----AVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDAD 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNE 120
            +   +E+++ SL   ++++ +  LS++K   D    E + +++   +      ++++  
Sbjct: 66  PAKLEDELSAMSLMGGRRLVRL-RLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK      I CY D    L  L  ++L   + S++ EA ++ ++ L  +
Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALELFVSRLPKE 184

Query: 181 RIASRNELQKLSSY 194
           R  +R E+++L+ Y
Sbjct: 185 RGVARAEIERLALY 198


>gi|167648983|ref|YP_001686646.1| DNA polymerase III subunit delta [Caulobacter sp. K31]
 gi|167351413|gb|ABZ74148.1| DNA polymerase III, delta subunit [Caulobacter sp. K31]
          Length = 350

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 87/176 (49%), Gaps = 7/176 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + YG D+G++ +  +Q  K +     DPF    L   ++        +E+++ S+   
Sbjct: 22  AVVIYGRDRGVVRDRADQLVKRLFERPDDPFDTAQLTESDLDAQAGKLEDELSALSMMGG 81

Query: 83  KKIILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNEIKKNNTLRKIAEKFTS 136
           ++++ +  L+ EK   D    E + +++   +      +I++  + +++TLRK+AEK   
Sbjct: 82  RRLVRL-RLTGEKGGPDKQAAEALTRHVEGQLNPDAFFLIEAGALGRDSTLRKVAEKAAG 140

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              I CY D    L  L  E++   + S++ EA  + ++ L  +R  +R E+++L+
Sbjct: 141 AAVIPCYEDEAGDLARLTRETMAKDKVSLNGEALDLFVSRLPKERGVARAEIERLA 196


>gi|197106980|ref|YP_002132357.1| putative DNA polymerase III, delta subunit [Phenylobacterium
           zucineum HLK1]
 gi|196480400|gb|ACG79928.1| putative DNA polymerase III, delta subunit [Phenylobacterium
           zucineum HLK1]
          Length = 350

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 87/174 (50%), Gaps = 7/174 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D G++ +  +Q          DPF + +L  +++  +      E+ + SL   ++
Sbjct: 24  LIYGRDLGVVRDRGHQLAAKTVPNPDDPFDVAILTEVDVADDPPRLEGELAAQSLMGGRR 83

Query: 85  IILIENLSTEKKVLD-CLEEIIIKNICNHI-----IIIKSNEIKKNNTLRKIAEKFTSVL 138
           ++ +  LS+EK  +D  + E + ++    +      +I++  + +++ LRK+ EK  +  
Sbjct: 84  LVRL-RLSSEKPAVDKAVAEALERHAKGELNPDAFFLIEAGNLGRDSALRKVGEKQPACA 142

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
            I CY D    +  L++E+L      ++ +A  + +A +  +R  +R E+++L+
Sbjct: 143 TIPCYEDEPGDVARLVKETLARDNVGLNADALALFVARMPKERGVARQEIERLA 196


>gi|304320512|ref|YP_003854155.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis
           HTCC2503]
 gi|303299414|gb|ADM09013.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis
           HTCC2503]
          Length = 351

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 14/257 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +FYG D GL+ E   +    I    +DPF+ + L+  +I+ ++    +E  + S    
Sbjct: 22  VALFYGPDGGLVQERARRLSHYIVEDVNDPFNAISLSEGDIE-SVGQLADEAMALSFMGG 80

Query: 83  KKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           +++I +        K V   L  I      N +++I++ ++KK + LRK  EK     AI
Sbjct: 81  ERLIRLRTPGEKAAKGVTHLLTRIEAGAAPNALVVIEAGDLKKTSALRKACEKSRFAAAI 140

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            CYP     L + I   L     SI   A   L+  +G D     +EL+KL  Y     L
Sbjct: 141 GCYPQEGKDLAETIRTRLKQESLSIDDAALLRLVTLMGDDHGVLSSELEKLILYMGPQSL 200

Query: 201 ------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +TE  +   +  +      EI + T++G   ++  L++    ++    +LL G 
Sbjct: 201 RAGTAEVTETDIAQALAQSTADATFEIADLTLRG---DSPTLSEALFRARGAGVSLL-GV 256

Query: 255 LQKFQ-LLEKIHIIKEC 270
           L+  Q  L ++  +KE 
Sbjct: 257 LRILQGRLARLMTVKEA 273


>gi|315497184|ref|YP_004085988.1| DNA polymerase iii, delta subunit [Asticcacaulis excentricus CB 48]
 gi|315415196|gb|ADU11837.1| DNA polymerase III, delta subunit [Asticcacaulis excentricus CB 48]
          Length = 350

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D+G + E      + I     DPF++ +L   +I  + +   +E+ + SL   ++
Sbjct: 24  LIYGKDRGQVLERGQALAQKIVPDIKDPFNVSLLTDTDIDADPARLEDELQAQSLMGGRR 83

Query: 85  IILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++ +    E  + +K+V   L+  +  ++  +   +I++  +  ++ +RK+A+   ++ +
Sbjct: 84  LVRLKFFSEKAALDKQVAAALKAHVAGDLNRDAFFLIEAGGLGGDSAVRKLADADKAIAS 143

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           I+CY D    ++ +  E+L   + +++ +A  I  A L  +R  +R E+++L   CL
Sbjct: 144 IACYEDETGDVVRMARETLAQNEVALTPDAMDIFAARLPKERGVARQEIERL---CL 197


>gi|296114816|ref|ZP_06833465.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978630|gb|EFG85359.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC
           23769]
          Length = 339

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 7/211 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GLI E   Q  + I+    DPF + +L     +        E  + SL   
Sbjct: 20  VILLHGEDTGLIRERATQAAQVITPELDDPFRVAILG----RDAHDRMAEECAALSLVGG 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ +        +   ++E +  +  + ++I+++  ++  + LR + EK  +  AI+C
Sbjct: 76  RRVVWVRE--ARDGLTGPVKECLAADT-DTLLIMEAPGLESRSKLRALLEKAPNCAAIAC 132

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YP+    L   I + LL     I  +A          DR A+R E++KL  +  +   +T
Sbjct: 133 YPEEGRVLEGSIRQMLLALGVEIDPDALSWFAERASPDRAATRAEVEKLFLFAGQGGRLT 192

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + V+  I D   + +E+   A + G    A
Sbjct: 193 HEDVQACIGDAASVSLEDAAFAAMSGDRAGA 223


>gi|162148178|ref|YP_001602639.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542817|ref|YP_002275046.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786755|emb|CAP56338.1| putative DNA polymerase III, delta subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530494|gb|ACI50431.1| DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 337

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 9/297 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GLI E        I+    DPF + VL+    +        EI + SL   
Sbjct: 20  VILLHGDDSGLIRERARLAATAIAPNLDDPFRVAVLD----RDAADRLDEEIFALSLAGG 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ + +       L    +  +    + ++I+++  +     LR +AE      AI+C
Sbjct: 76  RRVVWVRDGGDS---LTAPLKASLARPSDTLVIVEAPGLASRARLRALAEAQADCAAIAC 132

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           YP+    L   I + L      I  +A       LG +R A+R E++KL+ Y      ++
Sbjct: 133 YPEEGRALEASIRQMLAEEDIRIDPDALSWFAGLLGPNRAATRGEVEKLALYAGRGGQLS 192

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              V+  I D   + +E+   A   G    A +  +  LA      A+    L     L 
Sbjct: 193 LDDVRMCIGDAAGVSLEDAAFAATAGDRAGADIAIERALAEGTSPIAVARSLLSHLHRLR 252

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           +  I  +    S    ++     +   + +   ++L +W    + E   +   R+ L
Sbjct: 253 RARIAMDGGQ-SRADAMRGLRPPVFFKRTDAFGQALSLWTAARLMEAAEQT-QRLEL 307


>gi|71083061|ref|YP_265780.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062174|gb|AAZ21177.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 331

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 159/343 (46%), Gaps = 49/343 (14%)

Query: 24  FIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++FYG ++GL  E I N F+KN     H           EI  +I+ F+N I + S F  
Sbjct: 19  YLFYGDNEGLKEENIKNLFEKNYKDKIHR------YEEKEILDDINIFFNNIFNKSFFDN 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +K+I+I N +T+K +   +EE++ K   +  II+ S  ++K ++LRK+ EK  S+  I  
Sbjct: 73  EKLIII-NRATDK-IKTIIEELMEKKPEDIQIILNSKNLEKKSSLRKLFEKEKSIACIPF 130

Query: 143 YPDNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           Y DN   L  +I  SL    K   IS++   +L+    GDR    NEL+K+ ++ L    
Sbjct: 131 YEDNNQTLNSII--SLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENFSL---- 184

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG------- 253
                      +   L I+EII  T     Y+A  L D  LA        + G       
Sbjct: 185 -----------NKKNLNIQEIIKLTNIADNYSASELVDHSLAKNTRKTVTILGENNYSDE 233

Query: 254 --------FLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                    L K + L KIH +++E +NI  E+ I   +  I    + ++ + +R W K+
Sbjct: 234 DNIIIIRTLLAKLKRLVKIHELVEEKNNI--EQAITACKPPIFWKDKPLVIQQIRSWKKD 291

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            + + ++K +    L +K   L KNI+     +I   + K NN
Sbjct: 292 GLEQLIYKTNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331


>gi|302381489|ref|YP_003817312.1| DNA polymerase III subunit delta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192117|gb|ADK99688.1| DNA polymerase III, delta subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 350

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 93/196 (47%), Gaps = 11/196 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E  +F+ +    +  +    + +G D+  + E      K I+   +DPF++ VL   +I 
Sbjct: 8   EVDRFLARPDAGIRAA----VIHGKDRSGVAERAEILCKAITPDLNDPFNVTVLTDSDID 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC------NHIIIIKS 118
            + +     + + S+   ++++ +  L  +K  +D +    +K         + +++I++
Sbjct: 64  GDEARLEEALTALSMIGGRRLVRV-RLGADKASIDKMLAAALKTHGEGGYNPDAMLVIEA 122

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +++ LRK AE   + + I+CY D    +  +  E+L   +  ++ +A  + +A L 
Sbjct: 123 GALGRDSVLRKAAEAGKASVGIACYEDEAGDIARMTREALAADKVGLTSDALAVFVARLP 182

Query: 179 GDRIASRNELQKLSSY 194
            +R   R E+++L+ Y
Sbjct: 183 KERGLMRQEIERLALY 198


>gi|57238818|ref|YP_179954.1| hypothetical protein Erum0870 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578747|ref|YP_196959.1| hypothetical protein ERWE_CDS_00830 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58616807|ref|YP_196006.1| hypothetical protein ERGA_CDS_00800 [Ehrlichia ruminantium str.
           Gardel]
 gi|57160897|emb|CAH57802.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416419|emb|CAI27532.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
 gi|58417373|emb|CAI26577.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 339

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 121/244 (49%), Gaps = 12/244 (4%)

Query: 25  IFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + YG+D G I     ++I+  + N+       F++  ++   I KN  T + E+++  +F
Sbjct: 22  LIYGNDYGKISMYRDKIISSIRSNVD------FTITNIDFPSINKNPGTLFVELSTVPMF 75

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +K++++ N   EK + + L +I+  NI N+ +II + E+  ++TLR+  +  +S ++I
Sbjct: 76  CTRKLLILTN--GEKVLSNELRDILEHNIGNNYVIIIAGELPNDSTLRQYYDSSSSAVSI 133

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            CY D+  +L  ++ + L       + E  Q L  +L  +  A ++EL+KL  Y      
Sbjct: 134 GCYKDDNNNLAFIVSDFLTENNVQFNNEILQYLCHSLSKNPHALQSELEKLILYIGNSKN 193

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T Q +++ +        +++  + ++  I N    ++  L +K     L+   L+ F  
Sbjct: 194 LTIQSIQEGLLTELDPVSDDLYISIVERDIENFTKFSNILLKNKFTPILLIRVLLKYFLR 253

Query: 261 LEKI 264
           LE I
Sbjct: 254 LEYI 257


>gi|73666710|ref|YP_302726.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake]
 gi|72393851|gb|AAZ68128.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake]
          Length = 334

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 11/254 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + YG+D G I    N +K+ I   I  +  FS   ++   + KN ST + E+ + S+F K
Sbjct: 22  LIYGNDYGKI----NMYKEKIIKHINTNTEFSTSNIDYPTVNKNPSTLFIELTTISMFCK 77

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            K+I+I N   EK +   L+ I+  NI  + +II S E+  +++LR+  +   +  +I C
Sbjct: 78  NKLIIIAN--GEKSISQELKNILNNNIGRNYVIITSGELSIDSSLRQYYDNSLNAASIGC 135

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D+  +L  +I + L   +   +    Q L + L  +  A   ELQKL  Y   +  +T
Sbjct: 136 YKDDNDNLAFIISDFLTQNKVHYNCTTLQYLCSVLSQNCNALEPELQKLMLYIGNNKNLT 195

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGK-IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
            + +++ +  T +  I E +  +I  K + N    ++  L +K    AL+   ++ F  L
Sbjct: 196 TKDIQESLL-TEIDPISEDLCISIAEKNLENFTKFSNILLKNKFTPIALIRILIKYFLRL 254

Query: 262 EK-IHIIKECSNIS 274
           E  I ++K+  +I+
Sbjct: 255 EYLIRVVKDGESIN 268


>gi|329847391|ref|ZP_08262419.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19]
 gi|328842454|gb|EGF92023.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19]
          Length = 350

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 84/179 (46%), Gaps = 8/179 (4%)

Query: 20  SHFVFIF-YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           SH + +  YG D+  + E      K I     DPF++ ++   +I+ + +    E+ S S
Sbjct: 18  SHVLGVLIYGKDRSQVIERATVLAKRIVPDITDPFNVSLITDTDIENDPARLEGELQSLS 77

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNIC------NHIIIIKSNEIKKNNTLRKIAE 132
           +   ++++ ++   TEK  LD     ++K            +II++  +   + LR++A+
Sbjct: 78  MMGGRRLVRLK-FFTEKAALDKAVAAVVKQHAAGDYNREAFLIIEAGSLGGESALRRLAD 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
              ++++I+CY D    ++ +  E+      S++  A  I    L  +R  +  E+++L
Sbjct: 137 ADKALVSIACYEDETGDIIRMAREAFAANGVSLTTGAMDIFAQRLPKERGIAHQEIERL 195


>gi|254418443|ref|ZP_05032167.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3]
 gi|196184620|gb|EDX79596.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3]
          Length = 350

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + +G D+  + E      + I+   +DPF++ VL   +I  + S     + + SL   ++
Sbjct: 24  VIHGKDRSGVAERAEVLCRAITPDLNDPFNVTVLTDSDIDSDESKLEEALTAMSLMGGRR 83

Query: 85  IILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           ++ I  LS  K  +D      +K       N  + +++++++++ + + LRK AEK    
Sbjct: 84  LVRI-RLSALKPGVDKAVAAAVKIHAEGGYN-PDAMLVVEADQLGRESALRKTAEKEAGA 141

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           + I CY D    +  +  E+L   +  ++ +A    +  L  +R   R E+++L+
Sbjct: 142 VGIVCYEDETGDIARMTREALAADKVGLTADALDRFVGRLPRERGLMRQEIERLA 196


>gi|154251731|ref|YP_001412555.1| DNA polymerase III subunit delta [Parvibaculum lavamentivorans
           DS-1]
 gi|154155681|gb|ABS62898.1| DNA polymerase III, delta subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 347

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 153/351 (43%), Gaps = 28/351 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E+ +F  K    +       + YG D GL+ E I    + +     DPF +  L+  +++
Sbjct: 7   EADRFATKPDPKVV----AVLAYGPDAGLVRERIKMLARTVVDDLADPFRVAELSDTDLK 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           ++ +   +E  + ++   ++++ +   +     +   E  +     + ++++++ E+   
Sbjct: 63  QDPARLSDEAAAIAMLGGRRVVRVRGAADATAKI--FESFLENPAGDALVLVEAGELGPR 120

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           ++LR + E   +  AI+CY D+   L ++I   L          A + L  +LG DR  +
Sbjct: 121 SSLRLLFEGAANAAAIACYADDAGVLENVIRTRLANEGLVPEPAALEYLRDHLGSDRGVT 180

Query: 185 RNELQKLSSYC-----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           +NEL+KL  Y       E   +T    +  + D     ++++I+A + G +    +    
Sbjct: 181 QNELEKLILYAGPGKQGEKRAVTLDDARASVGDNAGTSLDDVIDAAMGGDLDGLDVALAR 240

Query: 240 FLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             A++  + A+L+   +   QL      I+  S++  E  I+     +   ++N +Q  +
Sbjct: 241 ARAAETNAIAILNALSRHLMQLHLATARIETGSDV--EGAIRSFRPPVHFSRKNAVQRQM 298

Query: 299 RIWNKNLVRETLHKIDHRIHLA-------RKKKYLEKNIIFQTILYIAQTA 342
           ++WN+        ++D  + LA       +     +  I  QT+L IAQ A
Sbjct: 299 KLWNR-------KRLDRALALALEAEGQCKSSGQPDVAICGQTLLRIAQGA 342


>gi|296533439|ref|ZP_06896022.1| DNA-directed DNA polymerase III delta subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296266219|gb|EFH12261.1| DNA-directed DNA polymerase III delta subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 345

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 16/289 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             + +G D GLI E       ++ +  +DPF L  L   E          E+ + ++   
Sbjct: 21  AVLLHGDDAGLIQERAEALVASV-VGGNDPFRLAELP-REAAAKPGALAGEMAALAMTGG 78

Query: 83  KKIILIENLSTEKKVLDCLEEII---IKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++++ + + +      D L   +   +      +++++  E+     LR   E       
Sbjct: 79  RRLVRVRDAT------DALANAVKEALAGPGEALLVLEGGELTARAKLRTQLEAARDAAV 132

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+CY +    L   I   L     +I   A   L + LG DR+  R E++KL+ Y     
Sbjct: 133 IACYRERGAELAASIGRMLQEQGVAIDPPALDWLSSRLGEDRMLLRREVEKLALYAGAGG 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            ++E+ V     +   L ++E + A   G I  A    +   A      A+L   L+  Q
Sbjct: 193 RLSEEDVLACAGEGSTLDLDEALIAATAGDIPLADRALEAAFAEGASPIAVLRAALRHVQ 252

Query: 260 LLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++H+  +           ++     +    +   + +LR+W+  L+
Sbjct: 253 ---RLHLASLAVARGQPASAAMEGLRPPVFFRAKPGFERALRLWSPALL 298


>gi|329891185|ref|ZP_08269528.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846486|gb|EGF96050.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 350

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + +G D+  + E      + I+   +DPF++ +L   +I  +       + + S+   ++
Sbjct: 24  VIHGKDRSGVTERALTLCRTITPDLNDPFNVTLLTEADIDGDAVRLEEALTALSMIGGRR 83

Query: 85  IILIENLSTEKKVLDCLEEIIIKNI------CNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           ++ I  +S  K  +D      +          + +++I++  + + + LRK AEK    +
Sbjct: 84  LVRI-RMSDGKAGVDKAVAAALTAHAEGAYNPDAMLVIEAGALGRESALRKAAEKAQGAV 142

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           AI+CY D    +  +  E+L   +  +S +A    +A L  +R   R E+++L  Y
Sbjct: 143 AIACYEDEVGDVARMTREALGADKVGLSSDALDRFVARLPRERGLMRQEIERLILY 198


>gi|218513713|ref|ZP_03510553.1| DNA polymerase III subunit delta [Rhizobium etli 8C-3]
          Length = 71

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 1  MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
          MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1  MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58 LNALEIQKN 66
          L+  ++QK+
Sbjct: 57 LDIADLQKD 65


>gi|88657564|ref|YP_506954.1| hypothetical protein ECH_0126 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599021|gb|ABD44490.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 334

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNE 73
           NL L++ + I YG+D G     I+ +KK I   +  +  F++  ++   + KN ST + E
Sbjct: 14  NLQLTNNILI-YGNDYG----KISMYKKKIINHVNTNSEFAISNIDFSTVNKNPSTLFIE 68

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + + S+F + K+I++ N   EK +   L+ ++  NI N+ III S E+  ++TLR+  + 
Sbjct: 69  LTTISMFCQNKLIILAN--GEKSISQELKHVLSNNIGNNYIIITSGELSPDSTLRQYYDN 126

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             +  +I CY D+  +L  +I + L   +   +    Q L   L  +  A + EL+KL  
Sbjct: 127 SRNAASIGCYKDDNDNLSFIISDFLTKNKVQYNATTLQYLHNVLSQNCNALQPELEKLIL 186

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y   +  +T Q++++ +        E++  +  +  + N    +D  L +K    AL+  
Sbjct: 187 YIGNNKNLTIQNIQESLLTEIDPISEDLCVSVAEKNLENFTKFSDVLLKNKFTPIALIRI 246

Query: 254 FLQKFQLLE 262
            ++ F  LE
Sbjct: 247 LIKYFSRLE 255


>gi|148284276|ref|YP_001248366.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str.
           Boryong]
 gi|146739715|emb|CAM79535.1| DNA polymerase III, delta subunit [Orientia tsutsugamushi str.
           Boryong]
          Length = 339

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 19/188 (10%)

Query: 27  YGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           YG+D GLI     E+   F  N+ I  +D   L   + + I          +NS +LFS+
Sbjct: 26  YGNDHGLIDYRCQEITKLFNANLRI--YDYRELTEADFIFI----------LNSNNLFSQ 73

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++I+ I N  T   +   L++ +  N  N +I++  NE   ++T R+  E    + A+ C
Sbjct: 74  REIVKIYN--TPGNINAALKKALTFNNQNFLIVL-GNEFSASSTTRQWFETQKYLAALGC 130

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y +N   +  L+ + +    K+I+ EA         GD+    NE+ KL  YC +   I+
Sbjct: 131 YTENSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCDTIS 190

Query: 203 EQHVKDII 210
           ++ V   I
Sbjct: 191 KKEVNKCI 198


>gi|189183151|ref|YP_001936936.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str.
           Ikeda]
 gi|189179922|dbj|BAG39702.1| hypothetical protein OTT_0244 [Orientia tsutsugamushi str. Ikeda]
          Length = 339

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 27  YGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           YG+D GLI     E+I  F  N+ I  +D   L   + + I          +NS +LFS+
Sbjct: 26  YGNDHGLIDYRCQEIIKLFNANLRI--YDYRELTEADFIFI----------LNSNNLFSQ 73

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++I+ I N  T   +   L++ +  N  N +I++ S E   ++T R+  E    + A+ C
Sbjct: 74  REIVKIYN--TPGNINAALKKALTFNNKNFLIMLGS-EFSASSTTRQWFETQKYLAALGC 130

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y ++   +  L+ + +    K+I+ EA         GD+    NE+ KL  YC +   I+
Sbjct: 131 YTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCDTIS 190

Query: 203 EQHVKDII 210
           +Q V   I
Sbjct: 191 KQEVNKCI 198


>gi|51473388|ref|YP_067145.1| DNA polymerase III subunit delta [Rickettsia typhi str. Wilmington]
 gi|51459700|gb|AAU03663.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 321

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 15/190 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81
             + YG DKG I ++  +  KN+++         +L+++E +  NI +F   +NS + F 
Sbjct: 22  ALLLYGPDKGYIEKICTRLVKNLNM---------LLSSIEYEDLNILSFEILLNSHNFFG 72

Query: 82  KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           +K++I I ++      LD  L+ I+  +  N  + I   ++  + +++K  E    + A+
Sbjct: 73  QKELIKIRSIGNS---LDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAAV 128

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +CY D++  +  +I   L    K ISKEA   L  +L GD     +E+ KL  +  +   
Sbjct: 129 ACYHDDEAKIERIILAKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIYFVHDVHE 188

Query: 201 ITEQHVKDII 210
           IT  HV ++I
Sbjct: 189 ITLNHVLEVI 198


>gi|254373632|ref|ZP_04989116.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548]
 gi|151571354|gb|EDN37008.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|89257146|ref|YP_514508.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315485|ref|YP_764208.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503371|ref|YP_001429436.1| DNA polymerase III, subunit delta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011053|ref|ZP_02275984.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368371|ref|ZP_04984389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|290954108|ref|ZP_06558729.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312493|ref|ZP_06803261.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144977|emb|CAJ80337.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130384|gb|ABI83571.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254179|gb|EBA53273.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|156253974|gb|ABU62480.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|187932239|ref|YP_001892224.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187713148|gb|ACD31445.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLSL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|328676247|gb|AEB27117.1| DNA polymerase III delta subunit [Francisella cf. novicida Fx1]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S   K+N T  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120

Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
             + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA++
Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|254368393|ref|ZP_04984410.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121287|gb|EDO65488.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 325

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|162447751|ref|YP_001620883.1| DNA polymerase III subunit delta [Acholeplasma laidlawii PG-8A]
 gi|161985858|gb|ABX81507.1| DNA polymerase III, delta subunit [Acholeplasma laidlawii PG-8A]
          Length = 315

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 117/264 (44%), Gaps = 17/264 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++  G    LI E I  ++    +   D F++V L+ALE +  I     E+ + S FS 
Sbjct: 4   TYLLVGQSAFLINEQIKTYQDKFKL---DQFNIVKLDALETE--IEVINQELQTVSFFSD 58

Query: 83  KKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            K+++IE+L      + KVL    + +     + ++I+   E+ K++ L    EK+T + 
Sbjct: 59  LKMVVIEHLDGLTRYDDKVLSTFYKYLESPSSDIVLILTITELPKDHNLGSYLEKYTFIE 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I         L+  I ES       I  ++ Q+++     D  +   E+ K+  Y  ++
Sbjct: 119 TIQSLEGET--LISYIRESFHKEGYQIEDKSIQLIIERTQNDLFSIHQEISKIKMYAYDE 176

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++  + V  ++       I     A ++G I + + + D  + +KMP+  + +      
Sbjct: 177 KIVFVEDVDLLVTRNLEDNIFSFSTAYLKGNIKSYMQIYDDLVTNKMPTITIFN------ 230

Query: 259 QLLEKIHIIKECSNISFEKIIQKT 282
            L   +H+I +  ++  + + QKT
Sbjct: 231 HLFNTMHLIMQTKDLMEQGLNQKT 254


>gi|56707362|ref|YP_169258.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669832|ref|YP_666389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456430|ref|ZP_03664903.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370934|ref|ZP_04986939.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874196|ref|ZP_05246906.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603854|emb|CAG44830.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320165|emb|CAL08213.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569177|gb|EDN34831.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840195|gb|EET18631.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158494|gb|ADA77885.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 325

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|134302695|ref|YP_001122663.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050472|gb|ABO47543.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 325

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 127 --LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLS 192
           +  L+ LS
Sbjct: 177 KQILKLLS 184


>gi|160893074|ref|ZP_02073862.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50]
 gi|156865157|gb|EDO58588.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50]
          Length = 337

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 113/253 (44%), Gaps = 23/253 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI--SITYHDP------FSLVVLNALEIQKNISTFWNEI 74
           V++ YG +      L+NQ++  +  ++T  D       F+    + +EI     T     
Sbjct: 28  VYLLYGDET----YLVNQYRDKLLSAVTDRDDNMNFAKFAGEKTDPMEIIGFCETM---- 79

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
                F+ ++++L E     KK  +   E I +     +I+   +E+ K N L K  +K 
Sbjct: 80  ---PFFADRRVVLAEGTGLFKKSCEEFAERIKELPDTSLILFVESEVDKRNKLYKTVDKL 136

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSS 193
              L   C+       + +  + +  G+ K I+ +A + L+ + G D  + +NE+ KL S
Sbjct: 137 GEAL---CFETPNEKTLAVWVKGMFKGEGKQITDDAIRSLIEHTGSDMNSIKNEIDKLIS 193

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y ++   +T   V+++       +I E+I+A  + +   AI L    L ++ P+  +L  
Sbjct: 194 YTVDREAVTASDVENLCVGNSEGHIFEMIDAISRKQQDRAIHLYHELLENREPAMRILFL 253

Query: 254 FLQKFQLLEKIHI 266
             +++ LL K  +
Sbjct: 254 IARQYDLLLKTKM 266


>gi|294055838|ref|YP_003549496.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615171|gb|ADE55326.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 22/208 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINS 76
           F FI  G D  L+ E   ++ +  +    D  S  V++       E+++ +  F + + +
Sbjct: 6   FTFI-CGDDDYLVSERGKEWFRAQTKDLMDDLSKEVIDGRAGNYAEVEEALGRFRSAVQT 64

Query: 77  TSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHI------IIIKSNEIK 122
            S+F ++K++ ++++           +  LD L+++  K     I      ++I +  + 
Sbjct: 65  LSMFGERKVVWLKDVNFLADSVTGRAQGTLDLLDDL--KGFLGGIDPSGVGVLITAQPVD 122

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K     K  +K     AI+   D+   L  LIEE        IS++A Q+L+  + G+  
Sbjct: 123 KRRAFFKWIQKTAEFTAIAGGKDSAQALAALIEEQCKAAGAQISRDAVQLLIGKVNGNTR 182

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDII 210
               E +KL ++  E   I E+ V D++
Sbjct: 183 LIVEECRKLCTFVGEGGSIGERLVVDLV 210


>gi|118496787|ref|YP_897837.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324532|ref|ZP_03058304.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422693|gb|ABK89083.1| DNA polymerase III, delta subunit [Francisella novicida U112]
 gi|194321367|gb|EDX18853.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 325

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD         L  Q NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHD---------LSDQ-NIDI 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S   K+N T  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120

Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
             + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA++
Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|94496573|ref|ZP_01303149.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58]
 gi|94423933|gb|EAT08958.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58]
          Length = 346

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 63/346 (18%), Positives = 133/346 (38%), Gaps = 53/346 (15%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ YG D+     L  + ++ +          + L+A  ++++ +   +E  + S+F  K
Sbjct: 26  FLLYGPDEAGSQALAKRLERAMGPQAE----RIDLDAPTLREDPARLSDEAAAFSMFGDK 81

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA-ISC 142
           + I +  +  +   L  L  ++      + +I  +  +K  + L K+A     +LA IS 
Sbjct: 82  RWIRVNGIGDD--CLPALNALLDAEAAGNPVIAVAGALKPTSKLAKLALDHKGILACISY 139

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL--------GGDRIASRNELQKLSSY 194
            PD +        E + IG   I+++    L ++L        GGDR     E++KL  Y
Sbjct: 140 QPDGREA------EQIAIG---IARDGGLRLSSDLARRIVDLSGGDRALMAGEIEKLILY 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINA-------TIQGKIYNAIMLADF-------- 239
                        D   D       E ++A       T  G + NA++  D         
Sbjct: 191 L------------DAAPDRPAEATGEALDALSADNPETEVGPLVNAVLGGDLRAMHRELT 238

Query: 240 -FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
               +     A++   L +  LL  I    + S    E  + +  + +   ++ ++   +
Sbjct: 239 ALAQAGAAMAAVIRPLLTRAMLLATIRDAFDASG-RLEAAVDQAGRAVFWKEKGLVTRQV 297

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           R+W+   +   + ++      +R  + L   ++   +L IA+ A +
Sbjct: 298 RLWDAPGIARVIQRLLAAERSSRGGRGLGDLMVRHELLAIARQAAR 343


>gi|157803359|ref|YP_001491908.1| DNA polymerase III subunit delta [Rickettsia canadensis str.
           McKiel]
 gi|157784622|gb|ABV73123.1| hypothetical protein A1E_00875 [Rickettsia canadensis str. McKiel]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81
             + YG DKG I ++     K++++         +  ++E  + NI++    +NS + F 
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNM---------LQTSIEYTELNIASLEILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I +   S    +   L+ I+ ++  N  + I   E+  +++ RK  E    + A +
Sbjct: 73  QKELIKVR--SVGNSIDQNLKIILSRDYINFPVFI-GEEMTSSSSFRKFFETEEYLAATA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           CY D+++ +  +I + +    K ISKEA   L A+L GD     NE+ KL
Sbjct: 130 CYHDDEVKIERIILDKVGKTNKIISKEANAYLKAHLKGDHNLVCNEINKL 179


>gi|254372151|ref|ZP_04987643.1| DNA polymerase III [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569881|gb|EDN35535.1| DNA polymerase III [Francisella novicida GA99-3549]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ N FK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S   K+N T  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120

Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
             + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA++
Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|328675340|gb|AEB28015.1| DNA polymerase III delta subunit [Francisella cf. novicida 3523]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S   K+N T  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQVLVDKLINDDDNVYLLVFSGMKKQNTTAK 120

Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
             + +  K   +       DN I++++   + L +   S++KEA Q+L     G+ IA++
Sbjct: 121 WFQSLEHKAIHIRIFQPSLDNSINIINYETQQLGL---SLTKEATQLLALKTEGNLIATK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|91205921|ref|YP_538276.1| DNA polymerase III subunit delta [Rickettsia bellii RML369-C]
 gi|157826718|ref|YP_001495782.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389]
 gi|91069465|gb|ABE05187.1| DNA polymerase III delta subunit [Rickettsia bellii RML369-C]
 gi|157802022|gb|ABV78745.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K       SI Y D              NIS+    +NS 
Sbjct: 22  ALLLYGPDKGYIDKICRHLVKKFNMLQTSIEYSDL-------------NISSLEILLNSP 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F++K++I I+ +     +   L+ I+  N  N  + I   +I  +++ RK  E   S+
Sbjct: 69  NFFNQKELIRIKGVGNS--IDKNLKVILNDNYINFPVFI-GEDITSSSSFRKFFETEESL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            +++CY D++  +  ++ E L    K I +EA   L  +L GD     NE+ KL  +  +
Sbjct: 126 ASLACYHDDEAKIEKIVLEKLAKCNKIIDREALIYLKNHLKGDHELVSNEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              +T   +K+++
Sbjct: 186 KQEVTLNDIKEVL 198


>gi|325661908|ref|ZP_08150528.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471760|gb|EGC74978.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 11/240 (4%)

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            +   FS++++I++EN    K     L + + +       +    E+ K   L K  +  
Sbjct: 65  ETMPFFSERRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAK 124

Query: 135 TSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             ++ +    ++ +   ++ +++       K IS+   Q LLA  G D    + EL+KL 
Sbjct: 125 GRIVELGRQDEHTLVRWILGMVKRE----GKQISERTVQFLLAKTGDDMENLQRELEKLF 180

Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y LE   IT + V++ IC TH+   I E++ A  + K   A+ L    LA K P   +L
Sbjct: 181 CYTLEKDAITVEDVEE-ICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRIL 239

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              +++F+LL ++  + + S    ++I +KT  +   + +   Q   +++ K  +RE L 
Sbjct: 240 FLLVRQFRLLLEVKELDQ-SGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE 296


>gi|331085701|ref|ZP_08334784.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406624|gb|EGG86129.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 8/190 (4%)

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            +   FS++++I++EN    K     L + + +       +    E+ K   L K  +  
Sbjct: 65  ETMPFFSERRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAK 124

Query: 135 TSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             ++ +    ++ +   ++ +++       K IS+   Q LLA  G D    + EL+KL 
Sbjct: 125 GRIVELGRQDEHTLVRWILGMVKRE----GKQISERTVQFLLAKTGDDMENLQRELEKLF 180

Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y LE   IT + V++ IC TH+   I E++ A  + K   A+ L    LA K P   +L
Sbjct: 181 CYTLEKDAITVEDVEE-ICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRIL 239

Query: 252 HGFLQKFQLL 261
              +++F+LL
Sbjct: 240 FLLVRQFRLL 249


>gi|282889594|ref|ZP_06298135.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500517|gb|EFB42795.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 341

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 7/212 (3%)

Query: 52  PFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNIC 110
           P++ V   A  +   I     E+N+  +F+ ++++LI++L   KK   + LEE  +    
Sbjct: 54  PYAFVQKEAESL--PIQELKEELNTGDMFASRRVVLIQHLDALKKPQREYLEEYCLHPSA 111

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISK 167
              ++  +    +   L K  EK   +  +     +   K  +  +I ++ + G KS+  
Sbjct: 112 QLCLVCSAATFNRTTQLYKKMEKAGVIFDVEEKKPWELEKYLIEQVIADARVEG-KSMDS 170

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
            A Q+L+  +G +R     EL+KL  Y      IT Q ++ I  +     I ++ +A  Q
Sbjct: 171 SAAQLLVKQVGTNRSMLHQELEKLCCYVGNRTSITTQDIQAICANVPSETIWQLGDAIFQ 230

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             I + I +    L    P   LL     +FQ
Sbjct: 231 RDIKSVIRIGLALLDEGTPFLILLRQIRSQFQ 262


>gi|208780598|ref|ZP_03247937.1| DNA polymerase III, delta subunit [Francisella novicida FTG]
 gi|208743573|gb|EDZ89878.1| DNA polymerase III, delta subunit [Francisella novicida FTG]
          Length = 325

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ N FK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNYEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT-- 126
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S   K+N T  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSGMKKQNTTAK 120

Query: 127 -LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
             + +  K   +       DN I+++D   + L +   S++KEA Q+L     G+ IA++
Sbjct: 121 WFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLGL---SLTKEATQLLALKTEGNLIATK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|157828118|ref|YP_001494360.1| DNA polymerase III subunit delta [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932819|ref|YP_001649608.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. Iowa]
 gi|157800599|gb|ABV75852.1| DNA polymerase III subunit delta [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907906|gb|ABY72202.1| DNA polymerase III, delta subunit [Rickettsia rickettsii str. Iowa]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   E+  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEELTSSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKNNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT   V ++I
Sbjct: 186 AREITLNDVLEVI 198


>gi|238917138|ref|YP_002930655.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750]
 gi|238872498|gb|ACR72208.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750]
          Length = 324

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNIS------ITYHDPFSLVVLNALEIQKNISTFWNEINS 76
           V++ YG ++ L  +  ++ K  I+       +Y+D  +  V + +++            +
Sbjct: 16  VYLLYGEEEYLKKQYRDRLKNAIAGDDTMNYSYYDSDNASVKDIIDV----------CET 65

Query: 77  TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFT 135
              F++K+++++EN    K   D L + I K+I ++++I+    ++ K N + K  +   
Sbjct: 66  LPFFAQKRLVIMENTGFLKSSNDELADYI-KHIPDYLVIVMVEKDVDKRNKVYKAVDSVG 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            V  +   P     L   I   L      IS+EA  ++L   G      R E++KL SYC
Sbjct: 125 YVCEMK--PQTTATLEKWIAGLLAKDNLKISREACDLILDKTGAGMDYIRQEIEKLVSYC 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
               ++T + V+ +       +I ++I+A    K   A+ L    L  K P   +L+  +
Sbjct: 183 QGRNVVTAEDVEKVCATQTTSHIFDMISAIANKKQQQALDLYYDLLELKEPPMRILYLIV 242

Query: 256 QKF 258
           ++F
Sbjct: 243 RQF 245


>gi|238650454|ref|YP_002916306.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic]
 gi|238624552|gb|ACR47258.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic]
          Length = 324

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   E+  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT   V ++I
Sbjct: 186 AREITLNDVLEVI 198


>gi|157825377|ref|YP_001493097.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford]
 gi|157799335|gb|ABV74589.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford]
          Length = 326

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNIS-----ITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K+++     I Y D              NIS+    +NS 
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNMLQTCIEYAD-------------LNISSVEILLNSP 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I ++     + + L+ I+  +  N  + I   EI  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIRSIGNS--LDNNLKTILSSDYINFPVFI-GEEITASGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            A++CY D++  +  +I + +    K ISKEA   L A+L GD     +E+ KL
Sbjct: 126 AAVACYHDDEAKIERIILDKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKL 179


>gi|255320936|ref|ZP_05362110.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SK82]
 gi|262380211|ref|ZP_06073366.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SH164]
 gi|255302105|gb|EET81348.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SK82]
 gi|262298405|gb|EEY86319.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SH164]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 72  NEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLR 128
           N +NS SLFS+   + +  N+  +   L  L+  I  N  N ++++  K +     +   
Sbjct: 63  NALNSLSLFSQHLAVEVHGNIKPDAGALKQLKNYIQHNESNLLLVVMPKQDSSSLKSAFF 122

Query: 129 KIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           ++ E    V+  ++ YP  +  ++ +  E L I    + +EA Q L+ +   + +A++N 
Sbjct: 123 QVVEANGVVVPLVANYPKERQQILSIEAEKLGI---QLDQEAWQWLMQHHEHNLLAAKNS 179

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L ++S    E  LI  +H+   + D       ++ +A + G +  +I +  + LAS  P 
Sbjct: 180 LMRVSDTFPEQRLILTEHLYACLQDQSRYSTYDLSDALLAGNLAQSIRIFQYLLASGEPM 239

Query: 248 HALLHGFLQKFQLLEKI 264
             +L    ++ +LL ++
Sbjct: 240 SLILWTISREMRLLMQL 256


>gi|260590116|ref|ZP_05856029.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583]
 gi|331084373|ref|ZP_08333477.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539628|gb|EEX20197.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583]
 gi|330401637|gb|EGG81218.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 326

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 15/233 (6%)

Query: 76  STSLFSKKKIILIENLSTEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAE 132
           +   F+ +++I +E+    K     L E + +    IC   ++   N++ K N + K  +
Sbjct: 66  TMPFFADRRVIFLEDTGFFKNQCGDLPEYMAELPEYIC---MVFIENDVDKRNRMYKAVK 122

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K+   +       N I  M  +   +    K I+++  ++ L+  G D      EL+KL 
Sbjct: 123 KYGRAVEFGVQDSNTI--MRWVLGMMKREGKKITQKDMELFLSKTGTDMGNIERELEKLL 180

Query: 193 SYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y ++  +IT Q +++ +C T +  +I ++I A  +     A+ L    LA K P   +L
Sbjct: 181 CYTMDREIITAQDIEN-VCTTQITNHIFDMIRAVTEKNQKKALDLYYELLALKEPPMRIL 239

Query: 252 HGFLQKFQLLEKIHIIKEC----SNISFEKIIQK-TEKNIIPMKRNILQESLR 299
               ++F L+ ++  + +C    S I+ +  IQ    KN +   R    E LR
Sbjct: 240 FLLARQFNLIMQVKELSKCGYDQSQIAKKAGIQPFVVKNYLTYARKYSTEELR 292


>gi|239948156|ref|ZP_04699909.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922432|gb|EER22456.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYVDL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   EI  + + +K  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
           +  IT   V ++I
Sbjct: 186 EREITLNDVLEVI 198


>gi|34580809|ref|ZP_00142289.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262194|gb|EAA25698.1| unknown [Rickettsia sibirica 246]
          Length = 324

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     +++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   E+  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT  +V ++I
Sbjct: 186 AREITLNNVLEVI 198


>gi|157964254|ref|YP_001499078.1| DNA polymerase III subunit delta [Rickettsia massiliae MTU5]
 gi|157844030|gb|ABV84531.1| DNA polymerase III, delta subunit [Rickettsia massiliae MTU5]
          Length = 324

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     K++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVKSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   E+  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEMISSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT   V ++I
Sbjct: 186 AREITLNDVLEVI 198


>gi|330813397|ref|YP_004357636.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486492|gb|AEA80897.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 337

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 158/344 (45%), Gaps = 47/344 (13%)

Query: 25  IFYGSDKGLIFELIN------QFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINST 77
           + YG +  LI E+ N      +  KN++I  Y + + L         +N   F   IN+ 
Sbjct: 20  LLYGENLSLISEIENIITAEAKTTKNLTIKKYQEEYLL---------QNKDIFDQLINAE 70

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           SLF  +++++I    +  K+++  +E   ++    II + S  + K + LR +AE  T+ 
Sbjct: 71  SLFGDQEMVVIS--KSTDKIIELYDEKNAQDNDKQIIFL-SGPLTKKSKLRNLAETSTNF 127

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I+CY D    L  ++ + L   + S+S+E             I S  E+  L+   + 
Sbjct: 128 TCIACYNDTPEQLQSILFQKLKDNKISVSREF------------INSIFEINSLNRQDIN 175

Query: 198 DIL-----------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           D +           ITE+++K I   +      EIIN  + G   N   +        + 
Sbjct: 176 DAVSKVQLIQNTSKITEENLKTIFHSSENSNNFEIINFCLLGDKKNINKVLSNIYEQGIN 235

Query: 247 SHALLHGFLQKFQLLEKIHIIK-ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
            + +L     K+++ + I I++ + ++    ++++  +  I   ++++++E LR W+K+ 
Sbjct: 236 FNEILAAL--KYKVKKLIDILESDIADKDPNQLVESFKPPIFWKEKSMVKEQLRRWDKSE 293

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNNNF 348
           +++ L +I + I +  KK Y   NII Q  I+  +  +C +N +
Sbjct: 294 LKQ-LMEIVYDIEVECKKNYDVSNIILQQFIVSTSNKSCLDNRY 336


>gi|317495075|ref|ZP_07953447.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914847|gb|EFV36321.1| DNA polymerase III [Gemella moribillum M424]
          Length = 326

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 22/208 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYH---DPFSLVVLNALEIQKNISTFWNEINSTSL 79
           V++ YG +    FE +N ++K I+  Y    D F+ V +N  +    + T   E  S+ L
Sbjct: 4   VYVIYGEN----FEAVNDYEKEITRNYVKEVDEFNRVKINMND--HTLETLVYECRSSGL 57

Query: 80  FSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
           F  +K+++ EN    L+  KK+     +D L + + +NI + +I+I  N  +K ++ +KI
Sbjct: 58  FGNEKVVVAENCNFLLAKPKKLKVEHNVDVLTKYL-ENINDEVILILKNS-EKIDSRKKI 115

Query: 131 AEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            ++   +  +  + + K H L+D I + +      ISK   Q L+     D    + EL+
Sbjct: 116 VKQLKEIGEVKEFSNFKEHQLIDYIVKQVGELGLEISKADAQFLVDYTQLDLANIKKELE 175

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLY 217
           KL  YC E   I+++ + +++C   + Y
Sbjct: 176 KLVLYCGEIGRISKKDI-ELLCTRSLDY 202


>gi|190570628|ref|YP_001974986.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213019121|ref|ZP_03334928.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190356900|emb|CAQ54278.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995230|gb|EEB55871.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + +GSD   +   + +   N+     + +S+ V++   + K+    ++E+ + S+F+KK+
Sbjct: 22  LIHGSDNSKVDIFVQEIIANL-----NEYSVQVMDFAVVNKSPGLLFSELANISMFTKKR 76

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           ++ + N+S    +   L  I+  NI +H I++ +N++  ++T +   E       I+CY 
Sbjct: 77  LVKLINVSGS--ISKELRNILDHNIGDHYIVMIANDLPYSSTTKSYMESSKIFGVITCYK 134

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           D+  +L D+I   L       + E    L +     ++   +EL+KL  Y
Sbjct: 135 DSGSNLCDIISSYLKQNDIECTSEIIYHLQSYFNHSKLPIYSELEKLVLY 184


>gi|262277796|ref|ZP_06055589.1| putative DNA-directed DNA polymerase III [alpha proteobacterium
           HIMB114]
 gi|262224899|gb|EEY75358.1| putative DNA-directed DNA polymerase III [alpha proteobacterium
           HIMB114]
          Length = 334

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 17/302 (5%)

Query: 17  LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
           LF  + + + YG +  L  E++++  +   I   + F    +   E+ K+I    N +N 
Sbjct: 13  LFSDYKINLIYGENFHLKTEILSKLTQ---IFKENEFKTKFIKEDELLKDIEILDNYLNQ 69

Query: 77  TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
            SLF +K+I++I+  S   K+LD    I    I   +I++  N  KK+ +LR  AEK   
Sbjct: 70  DSLFGEKEILIIQEASD--KLLDY---INFSEIDKKLILVTDNLTKKS-SLRNKAEKEKI 123

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +  I+CY D++  L  L+   L      +  EA   L      +R    + L+KL     
Sbjct: 124 ISCIACYEDDEKTLQSLLRNGLTKLDIKVPYEAIDQLFNINKLNRNDINSGLEKL-ELIT 182

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQG--KIYNAIMLADFFLASKMPSHALLHGF 254
           +D  +  +    +   T      EI NA + G  K  N I L+ F+  S   +  L  G 
Sbjct: 183 KDKKLDSESFSSLFNTTSSFDAFEISNALLSGDKKALNKI-LSSFYHFSINFNEVL--GP 239

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLRIWNKNLVRETLHKI 313
           L K+++ + I I +   N +   ++  T K  I  K +NI+Q  L  WNKN +   L KI
Sbjct: 240 L-KYKINKLIDIYEYNENETKITVLVDTYKPPIFWKEKNIIQTQLSKWNKNELDTLLDKI 298

Query: 314 DH 315
           + 
Sbjct: 299 NE 300


>gi|302671159|ref|YP_003831119.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus
           B316]
 gi|302395632|gb|ADL34537.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus
           B316]
          Length = 336

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 2/194 (1%)

Query: 76  STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           +    S K++IL+EN    K     L E +         I    E+ K   + K   K  
Sbjct: 77  TMPFLSDKRVILVENSGFFKSGCAELAEYLKNPSETTFFIFAEKEVDKRKDIYKTVSKIG 136

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               I C   ++  L   I   +    K IS  A   L+  +G D      EL+KL  YC
Sbjct: 137 --FEICCDEQDERMLSSWIASKVKSEDKIISPRALSFLIDRVGTDMSNISTELEKLICYC 194

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
           L+   ITE+ ++ +  +     I  + +A ++     AI L    LA K P   +L    
Sbjct: 195 LDRSEITEEDIEAVCANWLTNRIFAMTDAIVEKNQKRAIDLYYDLLALKEPPAKILALIT 254

Query: 256 QKFQLLEKIHIIKE 269
           ++F L+ ++  + E
Sbjct: 255 RQFNLMLQVKEMNE 268


>gi|296133955|ref|YP_003641202.1| DNA polymerase III, delta subunit [Thermincola sp. JR]
 gi|296032533|gb|ADG83301.1| DNA polymerase III, delta subunit [Thermincola potens JR]
          Length = 346

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSLF 80
           V++F+G +  L+ E++ +FK  +       F++ V+      KN+S         +    
Sbjct: 18  VYLFWGEETFLLEEVLAKFKYQLIPPDVMDFNMDVVEG----KNVSPEDIVRLATTLPFM 73

Query: 81  SKKKIILIEN---LSTEKKVLD------CLEEIII----KNICNHIIIIKSNEIKKNNTL 127
           S K++++IEN      +KK  +        EE++I    + +    +I  S+ + +   L
Sbjct: 74  SDKRVVIIENADLFKAQKKTGEKSDQAKSQEELLIEYCKQPLDTTCLIFTSDSVDRKKKL 133

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  ++  + +A+   P   I L D +E  +    K+I  EA   L+A +G +      E
Sbjct: 134 FKAVQE--TGMAVEFTPLKDIELNDWVENRINGMGKNIETEAIDELVAAVGSNLRMLDAE 191

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL +Y  +  +I  + V  ++  T  L I E+++A  +     AI L    +    P 
Sbjct: 192 LRKLFNYTGDRKVINREDVLQLVSKTTNLSIFELVDAVGERNSQKAIQLMREMIIYGEPP 251

Query: 248 HALLHGFLQKFQLL 261
             LL    + F+ L
Sbjct: 252 VRLLFMVAKHFRTL 265


>gi|15892161|ref|NP_359875.1| DNA polymerase III subunit delta [Rickettsia conorii str. Malish 7]
 gi|15619292|gb|AAL02776.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++      ++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVHSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I   E+  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT   V ++I
Sbjct: 186 AREITLNDVLEVI 198


>gi|167626871|ref|YP_001677371.1| DNA polymerase III subunit delta [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596872|gb|ABZ86870.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN    + +F+  G +      +I ++ +QFK K+  I+YHD      LN    ++N+  
Sbjct: 11  KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHD------LN----EQNLDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            + E++S SLFS  K+I    +   +KK+   L + +I    N  +++ S   K+N + +
Sbjct: 61  LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSGMKKQNTSAK 120

Query: 129 KIAEKFTSVLAISCY-P--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
                    + IS + P  DN I+++D   + L +   S+++ A Q+L+    G+ IAS+
Sbjct: 121 WFQSLEHRAIHISIFNPNIDNAINIIDYEAKQLGL---SLTQPAVQLLVQKTEGNLIASK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|225378291|ref|ZP_03755512.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM
           16841]
 gi|225209858|gb|EEG92212.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+ +++ILIEN    K   + L E + +     + +    E+ K + L K  +    +
Sbjct: 68  PFFADRRVILIENSGFFKGSCEELAEYMPQVPDTTLFLFVEEEVDKRSKLYKAVKNVGKI 127

Query: 138 LAISCYPDNKIHLMDLIEESLLIG----QKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           +  +      I   +L+   +L       K+I+    Q+ L+  G D      EL+KL  
Sbjct: 128 VEFT------IQTEELLTRWILTRLKKEGKNITGSVMQLFLSKTGTDMGNIDRELEKLIC 181

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           YC++  +I  + V+ +  +     I +++NA  +     A+ L    L  K PS  +++ 
Sbjct: 182 YCMDKDVIEAKDVEAVTTEQTTNKIFDMVNAIAEHNQKKALDLYYDLLTLKEPSMRIMYL 241

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP--MKRNILQ 295
             ++FQ+L     +K+ S   F+      +  I P  ++RN+ Q
Sbjct: 242 ISRQFQILLN---VKDMSQKGFDNNTMAQKAGIPPFAVRRNVTQ 282


>gi|89092045|ref|ZP_01165000.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92]
 gi|89083780|gb|EAR62997.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92]
          Length = 338

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 75  NSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRK 129
           N+ SLF++KKII +   S++  KK  + L++ +     ++I++I ++++    K +   K
Sbjct: 68  NALSLFAEKKIIELRLGSSKLNKKSSEILQQYLSNPAPDNILMIIADKLDGSSKKSAWFK 127

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +K  +++ I  +P     L + I +     +  +  EA Q+L   + G+ +A++ EL 
Sbjct: 128 AIDKCGAIVEI--WPVETAQLPNWIRQRAAQIELQLDDEAIQLLCDRIEGNLLAAKQELS 185

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL S    + ++T   V D + D+    I  + +A +QG+      +             
Sbjct: 186 KL-SLLFPNQMVTADAVVDAVSDSSRYDIYGLSDAALQGQSARCCKILQVLRQDGTEPPV 244

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE--KNIIPMKRNILQ 295
           +L    ++ + L  I    + S  SF+ + Q+        PM R   Q
Sbjct: 245 VLWALSKELRSLAAIQQA-QSSGQSFDAVCQRERIWGKRKPMARQAAQ 291


>gi|210609806|ref|ZP_03288113.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787]
 gi|210152733|gb|EEA83739.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+++++I++EN    K     L + I +      +I   +EI K   L K A+    V
Sbjct: 68  PFFAERRLIILENSGFFKNASPELSDYIKELPETTSMIFVESEIDKRGKLYKAAKDKGRV 127

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + +     ++  L+  I  S+    K ++++  +  L  +G D    + EL+KL  Y L+
Sbjct: 128 VELGR--QDESTLLRWIAGSVRRENKQVTEQVIRFFLTKVGTDMENIQRELEKLFCYTLD 185

Query: 198 DILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
              IT Q V++ IC T +   I +++NA  + +   A+      +A K P   +L    +
Sbjct: 186 KSEITAQDVEE-ICTTQITNQIFDMVNAVAEKQQRKALDYYYDLVALKEPPMRILFLLTR 244

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           +F+LL +   +K+     + +    ++  + P      QE  R ++   +RE
Sbjct: 245 QFRLLLE---VKDMDKRGYPRKEIASKVGLHPFVVGKYQEQARAFSSKALRE 293


>gi|229586433|ref|YP_002844934.1| DNA polymerase III subunit delta [Rickettsia africae ESF-5]
 gi|228021483|gb|ACP53191.1| DNA polymerase III, delta subunit [Rickettsia africae ESF-5]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 21/193 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     +++     SI Y D              NIS+    +NS+
Sbjct: 22  ALLLYGPDKGYIEKICKHLVQSLNMLQTSIEYADL-------------NISSLEILLNSS 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           + F +K++I I   S    +   L+ I+  +  N  + I    I  + ++RK  E    +
Sbjct: 69  NFFGQKELIKIR--SVGNSIDQNLKTILNSDYINFPVFI-GEAITSSGSIRKFFETEEYL 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A++CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +
Sbjct: 126 AAVACYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLIYFVHD 185

Query: 198 DILITEQHVKDII 210
              IT   V ++I
Sbjct: 186 AREITLNDVLEVI 198


>gi|15604063|ref|NP_220578.1| DNA polymerase III subunit delta [Rickettsia prowazekii str. Madrid
           E]
 gi|7388403|sp|Q9ZDX5|Y189_RICPR RecName: Full=Uncharacterized protein RP189
 gi|3860754|emb|CAA14655.1| unknown [Rickettsia prowazekii]
 gi|292571783|gb|ADE29698.1| DNA polymerase III, delta subunit [Rickettsia prowazekii Rp22]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 23/194 (11%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-----SITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             + YG DKG I ++     KN+     SI Y D  +++ L+ L            +NS 
Sbjct: 22  ALLLYGPDKGYIEKICTYLIKNLNMLQSSIEYED-LNILSLDIL------------LNSP 68

Query: 78  SLFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + F +K++I + ++      LD  L+ I+  +  N  + I   ++  + +++K  E    
Sbjct: 69  NFFGQKELIKVRSIGNS---LDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEY 124

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +  ++CY D++  +  +I   L    K ISKEA   L  +L GD     +E+ KL  +  
Sbjct: 125 LAVVACYHDDEAKIERIILGKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIFFAH 184

Query: 197 EDILITEQHVKDII 210
           +   IT  HV ++I
Sbjct: 185 DVHEITLNHVLEVI 198


>gi|269123150|ref|YP_003305727.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112]
 gi|268314476|gb|ACZ00850.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112]
          Length = 295

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 22/227 (9%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
           +S F +E+N+ SLFS+  I++++N +  K + + ++ + +    +  +II     K+N  
Sbjct: 34  VSEFLSELNAGSLFSEPTILILKNANKVKDINNVIKNVNLNTFNDKDVIIDYEANKENKK 93

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           ++++   F  V  I    +NK  L+  I+E L    K  SK++  IL   +G D  + +N
Sbjct: 94  IKELLNNF-EVHEILDDRENKNVLIKYIQERL----KCNSKDSNNILEI-IGQDFYSLKN 147

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E+ K+ SY L     +  ++K I+      +I  +    +  K      + +F +   M 
Sbjct: 148 EIDKICSY-LNGEEFSFDNIKPILSKNTNFFIFNLTEDILNKK------MIEFPIKENM- 199

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-----KNIIP 288
             ALL      F+++ K+HI+ +  NI++     + E     KN+ P
Sbjct: 200 --ALLSSLSNDFEIMYKLHIL-DIKNINYNNFKSQYENHKFFKNLNP 243


>gi|149173352|ref|ZP_01851982.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797]
 gi|148847534|gb|EDL61867.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 23/252 (9%)

Query: 16  NLFLSHF--VFIFYGSDKGLIFELINQFK-------KNISITYHDPFSLVVLNALEIQKN 66
           N   S F  V + YG D+ +  E I   +       ++ SIT +D         LE +  
Sbjct: 11  NPAASEFGPVVVLYGDDRYMKQEAIKAIEPLVLGEEEDTSITRYDG------KRLEKELP 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIKK 123
            ST ++E+ + S++  K+++++++   EK V      LE+ +     +  +I+      K
Sbjct: 65  PSTLFDELKTVSMWGDKRLVIVDD--AEKFVSAFRGKLEKYLEAPSKSSFLILDVKSWSK 122

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRI 182
           +  L K+  K    L + C       L   I + +  + QK IS+EA  +L+  +G    
Sbjct: 123 STRLAKLVSKIG--LDLECKELKGGALAKWICDTAGQLHQKQISREAAALLVELVGTHCG 180

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
               EL+KL+++  +   I+   ++ ++          + +A   G I +A+   D  L 
Sbjct: 181 QIHQELEKLTTFVGDQPRISPDDIRAVVGGWKAETTWAMTDAVRDGNIGDALHYLDNLLV 240

Query: 243 SKMPSHALLHGF 254
           +      +L G 
Sbjct: 241 AGEAPQKILGGL 252


>gi|67459470|ref|YP_247094.1| DNA polymerase III subunit delta [Rickettsia felis URRWXCal2]
 gi|67005003|gb|AAY61929.1| DNA polymerase III, delta subunit [Rickettsia felis URRWXCal2]
          Length = 321

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81
             + YG DKG I ++     K++++         +  ++E  + NIS+    +NS + F 
Sbjct: 22  ALLLYGPDKGYIEKIYKHLVKSLNM---------LQTSIEYSELNISSLEILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I   S    +   L+ I+  +  N  + I   EI  + + +K  E    + A++
Sbjct: 73  QKELIKIR--SVGNSIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKL 179


>gi|99035034|ref|ZP_01314830.1| hypothetical protein Wendoof_01000344 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112
           +S+ V++   + K+ S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N   H
Sbjct: 45  YSVQVMDFAIVNKSPSLLFSELANASMFTSKKLIKLINVSG--GISKELKNVLDYNASGH 102

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            +++ +N++  N+  +   E       I+CY D+  +L D+I   L
Sbjct: 103 YVMMVANDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148


>gi|42520244|ref|NP_966159.1| hypothetical protein WD0364 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409982|gb|AAS14093.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112
           +S+ V++   + K+ S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N   H
Sbjct: 45  YSVQVMDFAIVNKSPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNASGH 102

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            +++ +N++  N+  +   E       I+CY D+  +L D+I   L
Sbjct: 103 YVMMVANDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148


>gi|302385261|ref|YP_003821083.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1]
 gi|302195889|gb|ADL03460.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 33/293 (11%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L     NQ K  ++      F+      +++++ IS      ++   F++
Sbjct: 16  VYLLYGEEAFLKNSYKNQMKAAVTAGDTMNFNQFEGKGIDVREIISLG----DTMPFFAE 71

Query: 83  KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           K++IL+EN     S  +++   L +I     C  +I ++S   K++   +K+ E     L
Sbjct: 72  KRLILVENSGFFKSASEEMASYLSQIP-DTTC--LIFVESEVDKRSKMFKKVKE-----L 123

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI------LLANLGGDRIAS-RNELQKL 191
             +     ++   D+ + S   G   +S+E K+I      L  N+ GD + + R EL+KL
Sbjct: 124 GYAA----EMERQDMAQLSRWAGT-LLSREGKKITGHTMELFLNMTGDDMENIRMELEKL 178

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            SY L   +IT++ V+ I        I +++ A +  +   A+ L +  L  K P   +L
Sbjct: 179 ISYTLGREIITDEDVETICTVRTTNKIFDMVAAIVNRQTKKAMDLYEDLLTLKEPPMRIL 238

Query: 252 HGFLQKF-QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
               ++F QLL+    +KE      +K    ++  I P     +    R +++
Sbjct: 239 FLIARQFNQLLQ----VKELMGKGMDKGGISSKLKIPPFAAGKIMPQARTFSR 287


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 15/165 (9%)

Query: 99  DC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
           DC +E +   ++ N ++I     +K  N LRK+ E F  V  +S YP      + +  ++
Sbjct: 27  DCKIESVFFDSVSNELLIKTDRCVKNTNELRKLLESFFEV-PVSFYPVEAFKEISIDVDA 85

Query: 158 L---LIGQ----KSISKEAKQILL---ANLGGDRIASR-NELQKLSSYCL-EDILITEQH 205
           L   L G     +S + E ++++L      G DRI S+ N+++ L S  L +D+ I  Q 
Sbjct: 86  LRRELNGSFPYVQSAAVEGEKVVLKVSGEFGRDRIKSKMNQVKDLISKQLGKDLEIHVQV 145

Query: 206 VKD-IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           V+   I + H L +EE+ +   + +       +D+   S +PS++
Sbjct: 146 VESQAIVEKHDLIVEEVQDQKKKSRNRKRYQKSDYLTPSNLPSNS 190


>gi|257869953|ref|ZP_05649606.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2]
 gi|257804117|gb|EEV32939.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 37/246 (15%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + KF+Q+  +  FL+ F      S   L F   +           +P  LV+        
Sbjct: 24  TEKFLQEQVRQAFLTRFEV----SKDDLNFASFD--------MEREPLDLVI-------- 63

Query: 66  NISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIII 116
                  E  S   F  +++I +E    L+ EKK       LD    + +KN  +  +++
Sbjct: 64  ------QEAQSLPFFGDQRLIFVERPFFLTAEKKANVPEHDLDDFL-LYLKNPMDTAVLV 116

Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
              E  K +  +KI ++     + I   P  +  +   ++++L      +++EA ++ L 
Sbjct: 117 IFAEYDKLDERKKITKQLKKAGIIIDVAPMKEADVRRYLQQTLTNDGIEMTREAFELFLR 176

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
                   +  ELQKL  Y  +D  IT++ V+ +I  T    + E+ N  +QGK+ +A  
Sbjct: 177 LTDLHLSKAMQELQKLRLYAGKDAKITKEIVQQLIPKTLEHNVFELTNDVLQGKVADAWR 236

Query: 236 LADFFL 241
           L D  L
Sbjct: 237 LYDDLL 242


>gi|257454414|ref|ZP_05619676.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60]
 gi|257448180|gb|EEV23161.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 40/256 (15%)

Query: 73  EINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT--LRK 129
           E+NS SLF   K I++  N   +K+ L  L +    N  N ++II     KK+ +     
Sbjct: 68  ELNSLSLFDDNKAIIVHGNHKPDKEALAELAQFATSNPSNCLVIISDKYDKKSQSSAFFS 127

Query: 130 IAEKFTSVLAISCY------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           + +KF  V+    Y         + H  D   E        ++K A Q+L+A    + +A
Sbjct: 128 LCDKFGQVIECHLYQEQQREQLLQQHAQDFGLE--------LTKPAWQMLIAQTQHNLLA 179

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE--IINATIQGKIYNAIMLADFFL 241
           +   L +L SY             D    T  + I+E  + +  +   ++    L+D  L
Sbjct: 180 AYQSLWRL-SYLYA--------TTDANPPTRFVTIDESQLFDGLVSQSMFTTFDLSDAML 230

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           A             Q  ++L+++   +E  ++    +I K  +NI+ ++     +SL IW
Sbjct: 231 AGDTA---------QVAKILQQLKASEEPESLVL-WMIAKDMRNILSLQSGASYQSLGIW 280

Query: 302 N--KNLVRETLHKIDH 315
              + L  + LH+  H
Sbjct: 281 QSKQQLYSKALHRHSH 296


>gi|254292381|ref|YP_003058404.1| DNA polymerase III subunit delta [Hirschia baltica ATCC 49814]
 gi|254040912|gb|ACT57707.1| DNA polymerase III, delta subunit [Hirschia baltica ATCC 49814]
          Length = 334

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D G++ +      +      +    +V L+  E++K+       +++ SL   
Sbjct: 21  VVLAFGEDLGVVSDAAQTLVQKWRKVENSELDIVRLHEDELKKDPGLLTEHLSAVSLLGI 80

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           K+I+ +   N S  K+++  +++I    +   + +I+++ E+KK++ LR     F++   
Sbjct: 81  KQILRVRLSNESIAKQLIAIVDQIATGKLYPENFLILEAGELKKSSKLRT---SFSTSPD 137

Query: 140 ISC---YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +C   + D+ +   + I   L      I + A +   A L GDR  +  E++KLS Y  
Sbjct: 138 TACLQFFADSDVETSEYIRIKLSDQNIQIDELALEQFAAELPGDRRLANAEIEKLSLYAF 197

Query: 197 E 197
           +
Sbjct: 198 D 198


>gi|297584662|ref|YP_003700442.1| DNA polymerase III subunit delta [Bacillus selenitireducens MLS10]
 gi|297143119|gb|ADH99876.1| DNA polymerase III, delta subunit [Bacillus selenitireducens MLS10]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 140/313 (44%), Gaps = 21/313 (6%)

Query: 23  VFIFYGSDKGLIFELINQ-FKKNISITYHD-PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           V++ YG++  L+ +++ +  ++++S   +D  +S   +N + I+  +     E  +    
Sbjct: 18  VYVLYGTETYLMEDVMQRILRQSLSDDEYDFNYSKFDMNEIPIELAV----EEAFTFPFM 73

Query: 81  SKKKIILIEN---LSTEKKVLD------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             K+++LI +   L+ +K   D       L   + +     ++II ++  K +   + + 
Sbjct: 74  GGKRVVLIRDPWFLTAQKPKTDVEHNTDALLTYVSQAPEETVMIIMASYEKLDERKKLVK 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           E           P ++  L D I       +    KEA    L   G D +   +E+ KL
Sbjct: 134 ELKKQTRVFKAEPMSERELRDWISAKSADAEVQFEKEAADAFLTLTGADLMIMSSEINKL 193

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + Y  +  +IT++ V D++  +    I  +++AT++ +I  A+ +    L  K     +L
Sbjct: 194 TLYAADGGVITKEIVYDLVARSLEEDIFALVDATVKQRIDEAMKIYKDLLKQKEAPIKIL 253

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVR--E 308
              +++F++L   H +KE  +  + +     +  I P    +  + +  + K +L++  +
Sbjct: 254 ALVVRQFRIL---HQVKELKDQGYSEKAMAGKLKIHPYVVKLAAKQVSSFRKHDLLKQID 310

Query: 309 TLHKIDHRIHLAR 321
            L ++DH+I   R
Sbjct: 311 ELAELDHQIKTGR 323


>gi|241667450|ref|ZP_04755028.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875998|ref|ZP_05248708.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842019|gb|EET20433.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 22/187 (11%)

Query: 15  KNLFLSHFVFIFYGSDK----GLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN    + +F+  G +      +I ++ +QFK K+  I+YHD      LN    ++N+  
Sbjct: 11  KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHD------LN----EQNLDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            + E++S SLFS  K+I    +   +KK+   L + +I    N  +++ S   K+N + +
Sbjct: 61  LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSGMKKQNTSAK 120

Query: 129 KIAEKFTSVLAISCY-PD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
                    + IS + P+  N I+++D   + L +   S+++ A Q+L+    G+ IAS+
Sbjct: 121 WFQSLEHRAIHISIFNPNIHNAINIIDYEAKQLGL---SLTQPAIQLLVQKTEGNLIASK 177

Query: 186 NELQKLS 192
             ++ LS
Sbjct: 178 QIIKLLS 184


>gi|281356142|ref|ZP_06242635.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281317511|gb|EFB01532.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 358

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 29/64 (45%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
           KSI   A Q L   LGGD    RNEL+KL SY  +   IT    + + C T      E  
Sbjct: 163 KSIEPAAAQFLTETLGGDSGTLRNELEKLFSYTGDAPAITLNDCRAVCCRTPETVSWEFT 222

Query: 223 NATI 226
            A +
Sbjct: 223 GAIV 226


>gi|283795071|ref|ZP_06344224.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1]
 gi|291077412|gb|EFE14776.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 8/190 (4%)

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEI---IIKNICNHIIIIKSNEIKKNNTLRKIA 131
           N+   FS++++IL+E+    K   D L E    I    C  ++ ++S   K+N   +K+ 
Sbjct: 156 NTMPFFSERRLILVEDSGFFKAASDELVEAMADIPDTTC--MVFVESAVDKRNRLYKKVK 213

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           E      A      +   L       L    + I+    ++ L   G D     +EL+KL
Sbjct: 214 E---LGYAAELKKQDASQLARWAAGILARNGRKITAATMELFLEKTGDDMETISSELEKL 270

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            SY +   ++T + V+ +        I E++NA + GK   A+ L +  L  K P   +L
Sbjct: 271 ISYTMGREVVTAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKEPPMRIL 330

Query: 252 HGFLQKFQLL 261
               ++F  L
Sbjct: 331 FLIARQFNQL 340


>gi|225677392|ref|ZP_03788360.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590568|gb|EEH11827.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 338

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 51  DPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC 110
           D +S+ V++   + K+    ++E+ + S+F+ KK+I + N+S    +   L+ ++  N  
Sbjct: 43  DEYSVQVMDFAIVNKSPGLLFSELANISMFTSKKLIKLINVS--GGISKELKNVLDYNAS 100

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            H +++ + ++  N+  +   E       I+CY D+  +L D+I   L
Sbjct: 101 GHYVMMTATDLPHNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148


>gi|328876798|gb|EGG25161.1| hypothetical protein DFA_03409 [Dictyostelium fasciculatum]
          Length = 2186

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 21  HFVFIFYGSDKGLI--FELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
           H+  + +G + G I  F+L   Q KK++SI    PF LVV+  L+ QKN   F N  N  
Sbjct: 888 HYAKVIHGKECGAIASFDLTKEQQKKDLSICLESPFPLVVITLLDEQKNSVPFSNTPNPK 947

Query: 78  SL 79
           SL
Sbjct: 948 SL 949


>gi|119477449|ref|ZP_01617640.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2143]
 gi|119449375|gb|EAW30614.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2143]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 24/262 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +Q+   N  L   ++I  G +  L+ E  +  ++         FS  VL+      + S 
Sbjct: 8   LQQHLSNTLLP--LYIVSGDEGLLVQECCDAIRR---CCRKQGFSREVLHV-----DASF 57

Query: 70  FWNEI----NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK---NIC-NHIIIIKSNEI 121
            W+++    N+ SLFS+KK  LIE      K  D   + + +   NI  +++++I  N++
Sbjct: 58  DWSDLLASANAMSLFSEKK--LIELRMPTGKPGDAGGKALTQYSGNISPDNVLLIICNKL 115

Query: 122 KKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESL-LIGQKSISKEAKQILLANLGG 179
           + ++T  K  +   +  A + C+P +   L   I + L ++G K+ S EA Q+L   + G
Sbjct: 116 EASSTRTKWYKAVEAAGASVPCWPIDAKQLPRWISQRLNMVGLKADS-EALQMLADRVEG 174

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E++KL  +  E+ +I    +   + D     +  +I+  I G +  ++ +   
Sbjct: 175 NLLAAAQEIEKLRLFS-ENNIIDADTIAAAVADNARYDVFGLIDRAIAGDVRGSLKILQG 233

Query: 240 FLASKMPSHALLHGFLQKFQLL 261
             A      ALL    ++ + L
Sbjct: 234 LKAEGTEPLALLWAITRELRTL 255


>gi|170017694|ref|YP_001728613.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20]
 gi|169804551|gb|ACA83169.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20]
          Length = 333

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 100/215 (46%), Gaps = 13/215 (6%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIII 116
           Q+++S   ++  S   F  +++ILI+N   L+ + K+     D L ++I   + +++++ 
Sbjct: 56  QQDLSEVIDDAMSLPFFGDRRVILIQNPEFLTAKGKISETNQDQLSKLIESPVADNVVVF 115

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
             N++K +   +   +       I     N+      I + L     ++S +A Q L+  
Sbjct: 116 LINDLKIDKRKKITKQVLKHAEQIELAALNESAAKQAITQQLQQQNYTMSPDALQELVVR 175

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                    NEL KL +Y + D  IT   V  ++  T    + ++++A +  KI  A+++
Sbjct: 176 TNAQYTVMVNELPKLLAYAVYDKKITLDAVNALVPKTLTANVFDLVDAVMTKKIKQALII 235

Query: 237 ADFFLASKMPS---HALLHGFLQKFQLLEKIHIIK 268
               L +  P+   +A+L G   +F+LL ++  +K
Sbjct: 236 YRALLQNGEPALRVNAVLTG---QFRLLIQVAGLK 267


>gi|60117405|gb|AAX14459.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 177

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112
           +S+ V++   + K  S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N+  H
Sbjct: 45  YSVQVMDFAIVNKLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGH 102

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            +++ ++++  N+  +   E       I+CY D+  +L D+I   L
Sbjct: 103 YVMMVASDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148


>gi|291550850|emb|CBL27112.1| DNA polymerase III, delta subunit [Ruminococcus torques L2-14]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI-IIIKSNEIKKNNTLRKI--AEKF 134
             F+++++I+ EN    K          IK++      I    EI K N L K   ++ +
Sbjct: 68  PFFAERRLIVFENTGFFKTAAGADLADYIKDMPETTCFIFVEEEIDKRNKLYKAVKSKGY 127

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + L+       K  +  L+ +     QK IS+      L  +G D    + EL+K+  Y
Sbjct: 128 IAELSTQDAGTLKRWVAGLVRKE----QKQISESVIVYFLDKVGTDMENIQGELEKVFCY 183

Query: 195 CLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
            LE   IT++ + D +C T +  +I E+++A   G    A+ L    LA K P   +L  
Sbjct: 184 ALERDTITKEDI-DAVCVTQITNHIFEMVDAVAAGNQQKALDLYYELLALKEPPMRILFL 242

Query: 254 FLQKFQLL 261
            ++++++L
Sbjct: 243 LVRQYRML 250


>gi|224086395|ref|XP_002307879.1| predicted protein [Populus trichocarpa]
 gi|222853855|gb|EEE91402.1| predicted protein [Populus trichocarpa]
          Length = 644

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 145 DNKIHLMDLIEESLLIGQK--SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           +  IH+   I   +L+ QK   I  +  +IL+  LG DR+     ++  +   L DI +T
Sbjct: 182 EAGIHVRRQIYPEILLHQKLDDILPQLYEILITELGIDRLKQMLGIEGGTQRGLSDIFVT 241

Query: 203 EQHVKDII----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
           EQ ++ I+     +  V  I++I+++         ++ AD+ +    P H + +G LQ  
Sbjct: 242 EQGMRRIVEMLGTEGFVDQIDDILSSE------ENVLFADYTV--PFPVHRISYGILQSK 293

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
                  +I+      F+ +  K    + P  R IL+
Sbjct: 294 DAAGAFKLIEVELGFMFDVLFTKVMTTVCPRPRIILR 330


>gi|58698431|ref|ZP_00373341.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630216|ref|YP_002727007.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi]
 gi|58535054|gb|EAL59143.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592197|gb|ACN95216.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi]
          Length = 330

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH 112
           +S+ V++   + K  S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N+  H
Sbjct: 45  YSVQVMDFAIVNKLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGH 102

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            +++ ++++  N+  +   E       I+CY D+  +L D+I   L
Sbjct: 103 YVMMVASDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYL 148


>gi|148241175|ref|YP_001226332.1| DNA polymerase III subunit delta [Synechococcus sp. RCC307]
 gi|147849485|emb|CAK26979.1| DNA polymerase III, delta subunit [Synechococcus sp. RCC307]
          Length = 321

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 33/201 (16%)

Query: 111 NHIIIIKSNE----IKKNNTLRKIAE--KFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
           +H++++ + +    ++    LRK+AE  KF  + AI     +   L++L++ S    Q  
Sbjct: 95  SHLVLVSAGKPDARLRTTKALRKVAEEKKFP-LPAIW----DGAGLIELVQRSAAAAQLQ 149

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH--VLYIEEII 222
           +   A ++L   +G D      EL+KL+ YC E  +  E  VK +        L + E  
Sbjct: 150 LEPAAAELLADTIGNDSSRLAGELEKLALYCGEKAVDVE-AVKALAGPAQHNALAVGE-- 206

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHAL-------LHGFLQKFQLLEKIH-----IIKEC 270
            A + G +  A+   D  +A+  P   L       L G+L    LLE+       +I + 
Sbjct: 207 -ALLAGDVGGALTQIDGLMAANEPPLRLVASLVSQLRGWLW-LTLLEQSGEQDPMVIAKA 264

Query: 271 SNISFEK---IIQKTEKNIIP 288
           + I   K   +++K  + + P
Sbjct: 265 AGIGNPKRIYVMRKQLRGVRP 285


>gi|329770384|ref|ZP_08261766.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328836507|gb|EGF86167.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 326

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 21/186 (11%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79
           ++I YG +    FE IN F+K ++  Y    +L   N ++   N +T  N   E  S+ L
Sbjct: 4   IYIVYGEN----FEAINDFEKKVAQNYLK--TLDEFNYIKFNMNDTTIENLVYECRSSGL 57

Query: 80  FSKKKIILIEN----LSTEKKV-LDCLEEII---IKNICNHIIII-KSNE-IKKNNTLRK 129
           F  +K+++ EN    L+  KK+ +D   E++   ++NI + +I+I KSNE I     + K
Sbjct: 58  FGNEKVVVAENCNFLLAKPKKLKVDHNIEVLSNYLENISSEVILILKSNEKIDSRKKIVK 117

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             ++   +   S +  N+  + D I E++      ISKE  Q L+     D    + E++
Sbjct: 118 KIKEIGEIKEFSNF--NETQIADYIVEAVKEKNLKISKENAQFLVNYTRLDFANIKREIE 175

Query: 190 KLSSYC 195
           KL  YC
Sbjct: 176 KLVLYC 181


>gi|47459195|ref|YP_016057.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K]
 gi|47458524|gb|AAT27846.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K]
          Length = 310

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 42/273 (15%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG++  LI+   NQ KK IS +  +P         + + NI    NEI S  LFS 
Sbjct: 1   MYFIYGNENYLIW---NQIKKLISKSKTEPI------IFDEESNIYELINEIESYDLFSN 51

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICN------HIIIIKSNEIKKNNTLRKIAEKFTS 136
           +K I+++NL   KK    L EI+I ++ N       I +++ ++I   N+L       + 
Sbjct: 52  EKTIIVKNLWLLKKEDKKLSEILISSLENINSKYKIIFLLEEDKINNKNSLIHFLLNNSK 111

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V  +  Y  N   L+ +IE+ ++  + +IS EA    +  +  D      E+ KL     
Sbjct: 112 VDNVKKY--NPKELISVIEKIIVAKKGTISHEAIIEFILKVPNDLRIIIQEIDKL----- 164

Query: 197 EDILITEQHVKDIICDTHVLYIE----EIINA-----------TIQGKIYNAIMLADFFL 241
             +L+T+   K+I+      Y E      INA           T+Q KI N   +    L
Sbjct: 165 --LLLTKDITKEIVISETSDYFESDAFSFINAINEFDFKKIYETLQEKIINYEEIGQ--L 220

Query: 242 ASKMPSHALLHGFLQ-KFQLLEKIHIIKECSNI 273
             ++ SH  L   +   FQL + +  I+E  NI
Sbjct: 221 LGQLNSHLNLSFLIHTNFQLGKNLKKIEEQYNI 253


>gi|222445688|ref|ZP_03608203.1| hypothetical protein METSMIALI_01329 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435253|gb|EEE42418.1| hypothetical protein METSMIALI_01329 [Methanobrevibacter smithii
           DSM 2375]
          Length = 432

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 10/147 (6%)

Query: 77  TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEK 133
           T +   KK IL + +       +  EE I+K++ N  I+I SN   +I+ +     +  K
Sbjct: 2   TQIMDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTK 61

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             + +  S        ++D  EE +L  Q +I   A  ++  ++GGD    R  +  +S 
Sbjct: 62  VNATVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSP 114

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEE 220
             +  + + +  ++ I  D  V+Y+EE
Sbjct: 115 LPVGSVPVYQAAIERIRKDGSVVYMEE 141


>gi|148643448|ref|YP_001273961.1| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii ATCC
           35061]
 gi|148552465|gb|ABQ87593.1| thiamine biosynthesis protein, ThiC [Methanobrevibacter smithii
           ATCC 35061]
          Length = 432

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 10/147 (6%)

Query: 77  TSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEK 133
           T +   KK IL + +       +  EE I+K++ N  I+I SN   +I+ +     +  K
Sbjct: 2   TQIMDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTK 61

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             + +  S        ++D  EE +L  Q +I   A  ++  ++GGD    R  +  +S 
Sbjct: 62  VNATVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSP 114

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEE 220
             +  + + +  ++ I  D  V+Y+EE
Sbjct: 115 LPVGSVPVYQAAIERIRKDGSVVYMEE 141


>gi|58584436|ref|YP_198009.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418752|gb|AAW70767.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 336

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 12/111 (10%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKII----LIENLSTE-KKVLDCLEEIIIK 107
           +S+ +++   + K+    ++E+ + S+F+ KK+I    +  N+S E K VLD        
Sbjct: 45  YSVQMMDFAMVNKSPGLLFSELANISMFTSKKLIKLINVTGNISKELKNVLDY------- 97

Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
           N   H +I+ + ++  N+T++   E   +   I+CY ++  +L D+I   L
Sbjct: 98  NAGGHYVIMIATDLSYNSTIKSYIESSKTFGVIACYKNSGSNLYDIISSYL 148


>gi|331090750|ref|ZP_08339597.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399858|gb|EGG79517.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 328

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 15/169 (8%)

Query: 164 SISKEAKQI-------LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
           ++ KE KQI       LL+  G D    + E++KL  Y L + +I  + + D IC   + 
Sbjct: 145 NVKKEGKQIAESTIYYLLSKCGTDMENLQKEMEKLFCYTLNNDVINMEDI-DAICTMQIT 203

Query: 217 -YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
             I +++NA  + K   A+      LA K P+  +L+   ++F+LL +   +KE +   +
Sbjct: 204 NEIFDMVNAVAEKKQKRALDRYYDLLALKEPAMRILYLLSRQFRLLME---VKEMAGEGY 260

Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLAR 321
           +K    ++  + P       E  R +++  +R+ L +   I+ R+   R
Sbjct: 261 DKKTIASKAGLHPYAVGKYIEQSRSFSQEELRKILEESVDIEERVKTGR 309


>gi|312216522|emb|CBX96472.1| hypothetical protein [Leptosphaeria maculans]
          Length = 752

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           T +L I CY +N+  L+  I+   L+ Q+ +   A+   +   G  R     E    +  
Sbjct: 279 TLMLIIPCYNENEGELLSSIDS--LVEQRGLHGYARACFIICDGRARGPGMTET---TGD 333

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           CL D ++TE+  +  I   ++ Y  E ++ TIQ  IY  +    +F   KM
Sbjct: 334 CLLDTILTEKTYRKHIEKAYIAYDNEPMDVTIQKGIYRGL---PYFCIVKM 381


>gi|238923979|ref|YP_002937495.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656]
 gi|238875654|gb|ACR75361.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656]
          Length = 336

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 25/249 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81
           V++ YG ++ LI +  ++  K + ++  D  +        I QK I        +   F+
Sbjct: 16  VYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            K++ILIE+     K  D L E +  +    H I ++ + + K + L K A K       
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123

Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192
            C   N +   +  +E+L   IG       K +S+ A    +   G D      EL+KL 
Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC++  +I    V+ +  +     + E+++A    K   A+ L    LA K P+  +++
Sbjct: 181 CYCMDKDVIELSDVETVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240

Query: 253 GFLQKFQLL 261
              ++F +L
Sbjct: 241 LISRQFNIL 249


>gi|291524724|emb|CBK90311.1| DNA polymerase III, delta subunit [Eubacterium rectale DSM 17629]
          Length = 336

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 25/249 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81
           V++ YG ++ LI +  ++  K + ++  D  +        I QK I        +   F+
Sbjct: 16  VYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            K++ILIE+     K  D L E +  +    H I ++ + + K + L K A K       
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123

Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192
            C   N +   +  +E+L   IG       K +S+ A    +   G D      EL+KL 
Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC++  +I    V+ +  +     + E+++A    K   A+ L    LA K P+  +++
Sbjct: 181 CYCMDKDVIELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240

Query: 253 GFLQKFQLL 261
              ++F +L
Sbjct: 241 LISRQFNIL 249


>gi|254479241|ref|ZP_05092585.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM
           12653]
 gi|214034810|gb|EEB75540.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM
           12653]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/224 (17%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++FYG ++ L+ + + + K  + +   +  + +V+     ++ +        +   FS 
Sbjct: 18  LYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYVEAIIENCETLPFFSN 77

Query: 83  KKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
            KI++++N   +         K++ D  + +++ N    ++++   +I     L K  EK
Sbjct: 78  YKIVVVKNEEEQLSKIGDKELKRLTDYFKNMVLGNTSLVVVVVSGEKIDSRKKLYKFMEK 137

Query: 134 FTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +V+      P+  ++        L    K  +K+  + L+ N+G D  +  NEL+K+ 
Sbjct: 138 EAAVVEFKKLTPEEAVNYAGYF---LKKHGKKAAKKDVEYLVKNIGTDLYSIVNELEKVI 194

Query: 193 SYCLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAI 234
           +Y   + L  E+   V  +    +V ++   I    + + Y A+
Sbjct: 195 AYSEGETLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238


>gi|239616501|ref|YP_002939823.1| flavin reductase domain protein FMN-binding [Kosmotoga olearia TBF
           19.5.1]
 gi|239505332|gb|ACR78819.1| flavin reductase domain protein FMN-binding [Kosmotoga olearia TBF
           19.5.1]
          Length = 172

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 28/134 (20%)

Query: 112 HIIIIKSNEIK----KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
           ++I  K+NE K     N   + +AE  T  +AI     N  H  D I+ES + G   +S+
Sbjct: 14  YVITSKTNEKKNGQIANVVFQVVAEPPT--IAICINKQNLTH--DFIQESRVFGVSVLSQ 69

Query: 168 EAKQILLANLGGDRIASRNELQK---------------LSSYCLEDILITEQHVKDIICD 212
           +    L+ + G     S  EL K               L  YC+ ++     +V D+   
Sbjct: 70  DTPLKLIGHFG---FRSGRELDKFKEINHKIGVTGVPLLEDYCIANLEAKVVNVVDV--G 124

Query: 213 THVLYIEEIINATI 226
           THVLYI EI+NA +
Sbjct: 125 THVLYIGEIVNAEV 138


>gi|291563976|emb|CBL42792.1| DNA polymerase III, delta subunit [butyrate-producing bacterium
           SS3/4]
          Length = 325

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 75  NSTSLFSKKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
           ++   F++++++LI+       S  +++++ + EI  ++ C   ++   NE+ K N L K
Sbjct: 64  DTMPFFAERRLVLIDGSGFFKSSAPEELVNYIPEIP-ESTC---MVFVENEVDKRNKLYK 119

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +   +  A      +   LM      L    K I+++  +  +   G D    R EL+
Sbjct: 120 KVK--DNGYAAELKKQDADQLMRWAAGILSKDGKKITRQVMEYFMERTGDDMENIRMELE 177

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           KL  Y +   +IT++ V +++   HV   I E++ A + G    A+ L +  L  K P  
Sbjct: 178 KLICYTMGREVITKEDV-EVVGTVHVTNRIFEMVTAIVAGNTRKAMDLYEDLLTLKEPPM 236

Query: 249 ALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTE 283
            ++    ++F QLL+    +KE +     K  QK+E
Sbjct: 237 RIMFLIAKQFNQLLQ----VKELAG----KGAQKSE 264


>gi|327401013|ref|YP_004341852.1| Type II site-specific deoxyribonuclease [Archaeoglobus veneficus
           SNP6]
 gi|327316521|gb|AEA47137.1| Type II site-specific deoxyribonuclease [Archaeoglobus veneficus
           SNP6]
          Length = 216

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 22/137 (16%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
           G + ELI +FKK+   TY +             K+  T     N+  L + K   ++EN 
Sbjct: 56  GQMTELIKEFKKDGGWTYEE------------WKDWYTR-KYPNTIKLATNKVHNMLENF 102

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
              KKVLD L+E I++     +++IK+ E  + +   L+K+AE+  S   ++  PD +  
Sbjct: 103 ---KKVLDELDEEIVRRWVEDLVLIKTYEGLVLQEAILKKVAEELNSTYRLAT-PDEESK 158

Query: 150 LMDLIEESLLIGQKSIS 166
            +D +   L+I  K + 
Sbjct: 159 GIDGV---LIIDNKEVP 172


>gi|88860572|ref|ZP_01135210.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudoalteromonas tunicata D2]
 gi|88817770|gb|EAR27587.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudoalteromonas tunicata D2]
          Length = 346

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 19/135 (14%)

Query: 71  WNEI----NSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
           W E+    NS SLFS +KII ++       ++  K L  L E    +    I+I+K    
Sbjct: 60  WQELEQHFNSLSLFSDRKIIELDLGEQKAGTSGSKTLKWLAETSNPDC---ILILKG--- 113

Query: 122 KKNNTLRKIAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            KN T  +    F ++ AI     CY  +  HL+  + +     Q +++ +AK  LL + 
Sbjct: 114 AKNGTDVQKTAWFKALEAIGLFVPCYEISGNHLLTWLNQHCQTLQLNLAHDAKLFLLEST 173

Query: 178 GGDRIASRNELQKLS 192
            G+ +A+  EL+KLS
Sbjct: 174 QGNLLATYQELEKLS 188


>gi|291528954|emb|CBK94540.1| DNA polymerase III, delta subunit [Eubacterium rectale M104/1]
          Length = 336

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 25/249 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNISTFWNEINSTSLFS 81
           V++ YG ++ LI +  ++  K + +   D  +        I QK I        +   F+
Sbjct: 16  VYLLYGQERYLIKQYRDKLIKAM-VNEGDSMNFSSFEGDGINQKEIIDL---AETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            K++ILIE+     K  D L E +  +    H I ++ + + K + L K A K       
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEES-VDKRSKLYKAAAK------- 123

Query: 141 SCYPDNKIHLMDLIEESLL--IG------QKSISKEAKQILLANLGGDRIASRNELQKLS 192
            C   N +   +  +E+L   IG       K +S+ A    +   G D      EL+KL 
Sbjct: 124 -C--GNPVEFKEQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLL 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC++  +I    V+ +  +     + E+++A    K   A+ L    LA K P+  +++
Sbjct: 181 CYCMDKDVIELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMY 240

Query: 253 GFLQKFQLL 261
              ++F +L
Sbjct: 241 LISRQFNIL 249


>gi|56963415|ref|YP_175146.1| DNA polymerase III subunit delta [Bacillus clausii KSM-K16]
 gi|56909658|dbj|BAD64185.1| DNA polymerase III delta subunit HolA [Bacillus clausii KSM-K16]
          Length = 340

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 113/266 (42%), Gaps = 18/266 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V+  YG+++ LI + + +  + +        + + L   +    +     E  +   FSK
Sbjct: 18  VYFLYGTERYLIEQFLQKASEALFAGEEGEMNDIRLRLQDT--PLGEVVEEAETVPFFSK 75

Query: 83  KKIILIEN--LSTEKKV-------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           +K+++I++  L+T +KV       +  LE  +       ++++ +   K +   +   + 
Sbjct: 76  RKLVVIQDFYLATSQKVATKLEHDIPALEAYLDSPAQETVLVVVAPYEKLDERKKITKKL 135

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                AI   P ++      +E        +I ++AKQ+L    G + +    EL+K   
Sbjct: 136 KKQTSAIDVNPFDEKETFAWMEAIAKQEGVAIEQDAKQLLYKRTGPNLMLLHRELEKCML 195

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL-- 251
           Y  +   +T   V +++ +T    +  +I+ T +G+  +A+ L    L  K    A+L  
Sbjct: 196 YSKDGDPVTASIVDELVAETVEQSVFTVIDYTAKGRAGDAVRLYHQLLRQKEEPLAILAL 255

Query: 252 --HGFLQKFQL---LEKIHIIKECSN 272
               F Q FQ+   L K +  KE ++
Sbjct: 256 LTRQFRQFFQVKTRLAKGYTQKEMAS 281


>gi|154502623|ref|ZP_02039683.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149]
 gi|153796815|gb|EDN79235.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149]
          Length = 337

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 30/198 (15%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+++++I+ EN    K     L E I         I    E+ K + L K        
Sbjct: 80  PFFAERRLIVFENTGLFKSSGADLAEYIKTMPETTYFIFVEEEVDKRSKLYK-------- 131

Query: 138 LAISCYPDNKIHLMDLI--EESLL----IGQKSISKEAKQI-------LLANLGGDRIAS 184
            A+      K H+++L   +ES L    +G  ++ +E KQI        L  +G D    
Sbjct: 132 -AVKA----KGHIVELPFQDESTLKRWILG--NVRREGKQISDASVGYFLGKVGTDMQNI 184

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLAS 243
           + EL+KL  Y L   +IT + + D +C   +  +I E++NA  + K   A+ L    LA 
Sbjct: 185 QGELEKLFCYTLHRDVITPEDI-DAVCINQIGNHIFEMVNAVAEKKQRKALDLYYELLAL 243

Query: 244 KMPSHALLHGFLQKFQLL 261
           K P   +L   ++++++L
Sbjct: 244 KEPPMRILFLLVRQYRIL 261


>gi|46446734|ref|YP_008099.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400375|emb|CAF23824.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 343

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 12/255 (4%)

Query: 52  PFSLVVLNALEI----QKNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCLEEIII 106
           P   V+  ++EI    Q  +   ++E+ S +LF+ K++  I+N    KK +++ LE+   
Sbjct: 48  PSPNVLEESIEIIDGTQTTLDMLFSELYSHNLFADKRLFWIQNADKLKKNLIEALEKYFP 107

Query: 107 KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYP-DNKIHLMDLIEESLLIGQKS 164
           +   +  +I+ +    K  +  K AEK   +L ++   P + +  L++   + L   +K 
Sbjct: 108 QIPSSQYLILSAPSWNKQTSFYKAAEKEGIILELTEPKPWEKEKKLIEWASKQLSAKRKI 167

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           I  +  Q+L+   G D      E++KL  Y  +   IT+Q +  I        I ++  A
Sbjct: 168 IPYQVCQLLVKQTGLDSSLLIQEIEKLLCYIGDRNEITQQDIIKICNYQPSDTIWQLGEA 227

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
             +     AI++A   L        LL     +FQ   + HI   C  ++  K  Q+   
Sbjct: 228 LFKRDGLAAILIAQSLLTEGQSLLPLLRQIRSQFQT--QFHI---CVMLANGKAAQEISH 282

Query: 285 NIIPMKRNILQESLR 299
               +K N+L  +++
Sbjct: 283 EFPYLKGNLLDRTIQ 297


>gi|254456431|ref|ZP_05069860.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083433|gb|EDZ60859.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 330

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 18  FLSHFVFIFYGSDKGLIFELINQF---KKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           F  + + +FYG ++GL  +  N     K+NIS  Y +          EI +N + F   +
Sbjct: 13  FDQNKLILFYGKNEGLKNDSTNNLLKNKENIS-KYEEK---------EILENTNIFLENV 62

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI----IIIKSNEIKKNNTLRKI 130
              SLF  +KII+I      K+V D + +II +     I    III ++ ++K + LR  
Sbjct: 63  FCKSLFENEKIIII------KRVTDKILKIIEEIEEKKIEDLKIIINADILEKKSKLRSF 116

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            EK    + ++ YPD    L  L        + SIS     +++    GDR    NEL K
Sbjct: 117 FEKSREHVCVAFYPDTNQVLSKLTYNFFNQKKISISPANINLIVNKCNGDRETLFNELDK 176

Query: 191 LSSYCLEDILITEQHV 206
           +  +      ITE+ +
Sbjct: 177 IEYFSKSGKKITEESI 192


>gi|194476915|ref|YP_002049094.1| hypothetical protein PCC_0445 [Paulinella chromatophora]
 gi|171191922|gb|ACB42884.1| hypothetical protein PCC_0445 [Paulinella chromatophora]
          Length = 322

 Score = 36.2 bits (82), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 19/128 (14%)

Query: 121 IKKNNTLRKIA--EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ N  L+KIA  +KF  + A+  YP+ K    +L+ +++      I+ +A ++L   +G
Sbjct: 109 LQTNKLLKKIAIEQKFM-LPALWDYPNQK----ELVRQTIHKTGLRINNQALEVLSTAVG 163

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE-----EIINATIQGKIYNA 233
            D +  +NE++KL+ Y    I+  E  V        ++Y++     EI  A I+G+I  A
Sbjct: 164 KDSMNLKNEIEKLALYSGHKIITAEAVVA-------LIYLQSTNNLEIGIALIKGQIGEA 216

Query: 234 IMLADFFL 241
           I L D  L
Sbjct: 217 ISLIDILL 224


>gi|288869602|ref|ZP_05975181.2| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii DSM
           2374]
 gi|288860548|gb|EFC92846.1| thiamine biosynthesis protein ThiC [Methanobrevibacter smithii DSM
           2374]
          Length = 428

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTS 136
              KK IL + +       +  EE I+K++ N  I+I SN   +I+ +     +  K  +
Sbjct: 1   MDAKKGILTDEMKQVAAKENVSEEFILKSVANGTIVIPSNVNRDIEASGIGAGLRTKVNA 60

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +  S        ++D  EE +L  Q +I   A  ++  ++GGD    R  +  +S   +
Sbjct: 61  TVGTS------TDIVDFDEE-VLKAQIAIDNGADCLMELSIGGDLDVIRRRVLDMSPLPV 113

Query: 197 EDILITEQHVKDIICDTHVLYIEE 220
             + + +  ++ I  D  V+Y+EE
Sbjct: 114 GSVPVYQAAIERIRKDGSVVYMEE 137


>gi|325262637|ref|ZP_08129374.1| DNA polymerase III, delta subunit [Clostridium sp. D5]
 gi|324032469|gb|EGB93747.1| DNA polymerase III, delta subunit [Clostridium sp. D5]
          Length = 329

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 26/199 (13%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+++++++ EN    K     L + I +       I   NE+ K + L      F +V
Sbjct: 68  PFFAERRLLVFENTGFFKSAGADLADYIKEMPDTTFFIFIENEVDKRSKL------FKAV 121

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSI----SKEAKQI-------LLANLGGDRIASRN 186
            A       K H+++L  +  +  +K +     KE KQI       LL  +G D    + 
Sbjct: 122 KA-------KGHIVELPFQDEMTLKKWVLGLVRKENKQISESTVTYLLNKVGTDMENIQK 174

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVL-YIEEIINATIQGKIYNAIMLADFFLASKM 245
           EL+KL  Y LE   I  + V D +C T +  +I +++NA    K   A+ L    +A K 
Sbjct: 175 ELEKLFCYTLEKDGILPEDV-DAVCVTQISNHIFDMVNAVADKKQERALELYYELVALKE 233

Query: 246 PSHALLHGFLQKFQLLEKI 264
           P   +L+   +++++L ++
Sbjct: 234 PPMRILYLMTRQYRILHQV 252


>gi|47224193|emb|CAG13113.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 827

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 73  EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHI---IIIKSNEIKKNNTLR 128
           E  STS   K K  + +N+S  E+KV +CLEE+   ++C  +     I    +   +TL+
Sbjct: 605 ETESTSSIRKHKAAVAKNVSQREEKVKECLEELT--SLCKQLGKAFGIHYYNMFSTSTLK 662

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
           KIAEK      +SC P+  + +  + E+ L
Sbjct: 663 KIAEK------LSCEPEELLQIDGVTEDKL 686


>gi|239995377|ref|ZP_04715901.1| putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Alteromonas macleodii ATCC 27126]
          Length = 342

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 37/249 (14%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I  ++F Q  TK L   + VF   G +    F++I Q +        +  +++V      
Sbjct: 3   IYPNQFSQDITKALRPCYLVF---GDEPQQKFDVIEQIRAKAKANGFEERTVLVAE---- 55

Query: 64  QKNISTF-WNEI----NSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIII 115
               + F WN++     S SLFS ++ I +E L T K   +    L+E+      + +++
Sbjct: 56  ----TGFNWNQLIEATQSMSLFSSQQFIELE-LPTGKPGTEGSKMLQEVAASLNPDILLL 110

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
           +   +I K+    K  +    + A + CYP     L   + + L   Q S+S    +++ 
Sbjct: 111 VHGPKIGKDVQRGKWFKVLDDLGASVLCYPLEGKQLNAWLNQQLNAHQLSVSASGAKMIA 170

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
               G+ +A++ E+ KL+      +L   Q + D          E+I  A +    +N  
Sbjct: 171 DFCEGNMLAAKQEIDKLA------LLYPHQSISD----------EQIEKAMVDQSRFNVF 214

Query: 235 MLADFFLAS 243
            L D  L+ 
Sbjct: 215 QLVDVMLSG 223


>gi|257414009|ref|ZP_04744970.2| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82]
 gi|257201505|gb|EEU99789.1| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82]
          Length = 342

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
             F+ +++ILIE+    K   + L E + +     H I ++  E+ K + + K  +    
Sbjct: 82  PFFADRRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEE-EVDKRSKMYKTVKNNGK 140

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           ++  S   +    L   I   L    K+I+    Q+ L+  G D      EL+KL  Y L
Sbjct: 141 IVEFSAQSEE--LLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYAL 198

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +  +IT + V  +  +     I E++NA  +     A+ L    L  K P   ++    +
Sbjct: 199 DRDVITAEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITR 258

Query: 257 KFQLL 261
           +FQ+L
Sbjct: 259 QFQIL 263


Searching..................................................done


Results from round 2




>gi|319407833|emb|CBI81486.1| putative DNA polymerase III [Bartonella sp. 1-1C]
          Length = 347

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 181/348 (52%), Gaps = 1/348 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +  K+   S  + + YG D+GL+ E   +F K   +   +PFS V L+A
Sbjct: 1   MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFSTVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SLF   ++I I N + +K  L  L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITELPEASFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  N+G D
Sbjct: 120 LKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNVTLSLEARQYLHQNIGED 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR+EL+KL  Y L+   I  + VK I+ D   L  +E+++A + G + +  +    +
Sbjct: 180 RLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVVDAVLLGDLASFEIYFSRY 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A    S  +L+   + FQ L+ +    E    +   +I + +  I   ++ I++++LR 
Sbjct: 240 CAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFTVISQAQPPIFFQRKKIIEQALRY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
           WN   +   + KI   I  +RK   L + II Q +L +   A   NNF
Sbjct: 300 WNLEKILCAMKKIQSAILESRKNPPLSEVIIHQVLLKLTIIAKCQNNF 347


>gi|319404873|emb|CBI78474.1| putative DNA polymerase III [Bartonella rochalimae ATCC BAA-1498]
          Length = 347

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 180/348 (51%), Gaps = 1/348 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +  K+   S  + + YG D+GL+ E   +F K   +   +PFS V L+A
Sbjct: 1   MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFSTVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SLF   ++I I N + +K  L  L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLGDEARTLSLFGGDRLIWISNGANQKGFLKALKLLITEPPEASFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  N+G D
Sbjct: 120 LKKGVGLRNIIETASTAIALPCYADNAHSLDILIDEILDEFNATLSLEARQYLHQNIGED 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR+EL+KL  Y L+   I  + VK I+ D   L  +E+I+A + G + +  +     
Sbjct: 180 RLASRSELEKLCLYTLKKAHIAFEDVKAIVSDVSALSQDEVIDAVLLGDLASFEIYFSRC 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A    S  +L+   + FQ L+ +    E    +   +I + +  I   ++ I++++L+ 
Sbjct: 240 CAVNNTSFFVLNTAQRHFQQLQLLRYQVEIEGKTPFIVISQAQPPIFFQRKKIVEQALKY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
           WN   +   + KI   I  +RK   L + II Q +L +   A   NNF
Sbjct: 300 WNLEKILYAMKKIQSAILESRKNPLLSEVIIHQALLKLTIIAKHQNNF 347


>gi|319406358|emb|CBI79997.1| putative DNA polymerase III [Bartonella sp. AR 15-3]
          Length = 347

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 176/347 (50%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +  K+   S  + + YG D+GL+ E   +F K   +   +PF+ V L+A
Sbjct: 1   MAQKKAHE-VDQFLKHFSRSFPIVLIYGPDRGLVCERAQRFAKLSQVAIENPFTTVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SLF   ++I + N + ++  L  L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLGDEARTLSLFGGDRLIWVSNGANQQGFLKALKLLITEPPEASFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  N+G D
Sbjct: 120 LKKGVGLRNIIEMASTAIALPCYTDNTHSLDILIDEILGEFNITLSLEARQCLHQNIGED 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR+EL+KL  Y  +   +  + VK I+ D   L  +E+I+A + G +          
Sbjct: 180 RLASRSELEKLCLYTFKKAHVAFEDVKAIVSDVSTLSQDEVIDAVLLGDLVGFETYFSCC 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +A    S  +L+   + FQ L+ +    E    +   ++ + +  I   ++ I++++LR 
Sbjct: 240 IAVNKTSLFVLNTAQRHFQQLQLLRYQIEIEGKNSFVVVSQAQPPIFFQRKKIVEQALRY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           WN   +   + KI   I  +RK   L + II + +L +   A    N
Sbjct: 300 WNLEKILYAMKKIQSAILESRKNPLLSEAIIHKVLLKLTIIAKNQKN 346


>gi|240851360|ref|YP_002972763.1| putative DNA polymerase III subunit delta [Bartonella grahamii
           as4aup]
 gi|240268483|gb|ACS52071.1| putative DNA polymerase III subunit delta [Bartonella grahamii
           as4aup]
          Length = 346

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +       +  + + YG D+GLI E    F K   +   DPFS + L+A
Sbjct: 1   MAQKKAHE-VDQFLTRFSRAFPIVLIYGPDRGLICERAQCFAKLTQVAIEDPFSTIRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   NE  + SLF   ++I I N + +K  L  L+ +I K   +  I+I+S +
Sbjct: 60  AEIDKDPARLENEARTLSLFGGDRLIWISNAANQKGFLAALKILIEKPPESCFILIESGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR + E  +  +A+ C+ D+   L  LI+E L   +K++S +A++ L  +LG D
Sbjct: 120 LKKGTGLRNVVETSSKAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHESLGAD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ SR EL+KL  Y   ++ IT + VK I+ D   L  +E+I+A + G I       +  
Sbjct: 180 RLISRGELEKLCLYA-ANVHITLEDVKAIVSDVSALSQDEVIDALLLGDISGFEAHFNRH 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A       +L    + FQ L+ +    E    S   ++ +    I   ++  ++++L+ 
Sbjct: 239 AALHGALFFILSAAQRHFQQLQLLRYQVEVEGKSPFTVVSQARPPIFFQRKKTVEQALKY 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +   + +I   +  +RK   L + II Q +L +   A + 
Sbjct: 299 WKLEQISYAMERIQGAVLDSRKNPLLGEAIIRQVLLGLTIIARRQ 343


>gi|121602554|ref|YP_988388.1| DNA polymerase III subunit delta [Bartonella bacilliformis KC583]
 gi|120614731|gb|ABM45332.1| DNA polymerase III, delta subunit [Bartonella bacilliformis KC583]
          Length = 347

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 1/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +     +   S  + + YG D+GL+ E + +F K   I   DPF+ V L+A
Sbjct: 1   MAQKKAHE-VDHFLTHFSRSFPIVLIYGPDRGLVCERVQRFIKLTQIATDDPFATVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SLF   +++ + N + +K  L+ L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLGDEARTLSLFGSDRLVWVSNGANQKNFLEALKLLIAEPPEKSFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  +  +A+ CY D+   L  LI+E L   + ++S EA++ L  +LGGD
Sbjct: 120 LKKGIGLRNIVETASVAMALPCYADDVRSLDTLIDEVLESFKMTLSLEARKGLYESLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            + SR EL+KL  Y  E   IT + VK ++ D      +E+I+A + G      +    +
Sbjct: 180 HLVSRRELEKLCLYASEKRHITLEDVKAVVSDVSAFSSDEVIDAILLGDGKEFEVHFSRY 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +A       +L    + FQ L+ +    E    +   ++ +    I   ++  ++++L+ 
Sbjct: 240 VAMHNTPFLVLSTAQRHFQQLQILRYQVEIEQKTAFAVMSQARPPIFFQRKKTVEKALKY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +   + KI   +  +RK   L + II + +L +     + 
Sbjct: 300 WTLEKISYAMEKIQCALLESRKNPLLGEAIIHRVLLELVFMIRRQ 344


>gi|49474792|ref|YP_032834.1| DNA polymerase III subunit delta [Bartonella quintana str.
           Toulouse]
 gi|49240296|emb|CAF26774.1| hypothetical protein BQ13150 [Bartonella quintana str. Toulouse]
          Length = 354

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 1/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +     +   S  + + YG D+GL+ E + +F K   I   DPFS V L+A
Sbjct: 1   MAQKKAHE-VDHFLTHFARSFPIVLIYGPDRGLVCERVQRFVKLTQIAVEDPFSTVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SLF   ++I + N + +K  L  L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLVDEARTLSLFGGDRLIWVSNGAHQKNFLAVLKILIKEPPEKSFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  +  +A+ C+ D+   L  L+ E L   + +IS +A++ LL +LGGD
Sbjct: 120 LKKGTGLRNIIESASIAMALPCFADDIRALDTLVNEVLDHFKMTISLDARKWLLHHLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            + SR EL+KL  Y LE   I  + VK ++ D   L  +E+I+A + G I          
Sbjct: 180 HLVSRGELEKLCLYALEKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDIAGFEAHFSRH 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
              +     +L+   + FQ L+ +    +    S   +I + +  I   ++  ++ +L  
Sbjct: 240 ATLQNALFFILNTAQRHFQQLQLLRYQIDVEGKSAFTVISQAQPPIFFQRKKTIEHALNY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +   + ++   +  +RK   L + II Q +L +A  A + 
Sbjct: 300 WGMEQISYAMERLQGAVLESRKNPLLGEAIIRQALLALAIIARRQ 344


>gi|319409430|emb|CBI83079.1| putative DNA polymerase III [Bartonella schoenbuchensis R1]
          Length = 346

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 175/345 (50%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +     +   S  + + YG D+GL+ E   +F K   +   DPFS + LNA
Sbjct: 1   MAVKKAHE-VDHFLTHFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIDDPFSTIRLNA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+     +E ++ SLF   ++I I N + +K  L  L+ +I +      ++I++ +
Sbjct: 60  AEIDKDPVRLQDEAHTLSLFGGDRLIWISNGANQKGFLAALKLLIKEPPKACFVLIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  ++ LA+ CY D+   L  +I+E L   + ++S EA++ L  +LG D
Sbjct: 120 LKKGVGLRNIVETASTALALPCYTDDIRSLDRVIDEVLNNFKMTLSLEARKWLYESLGAD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ SR EL+KL  Y L+   +T + VK ++ +   L  +E+I+A + G +    M    +
Sbjct: 180 RLISRGELEKLCLYALKKDQVTLEDVKAVVSEASALSQDEVIDAILLGDVAGFEMHFSRY 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
              +     +L    + FQ L+ +    E    +   +I +    I  + +N ++++L+ 
Sbjct: 240 ATMQNTLFFVLSAAQRHFQQLQLLRYQVEVEGKAAFAVISQARPPIFFVGKN-VEKALKY 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +   + KI   +  +RK  +L + I+ Q +L +A +A K 
Sbjct: 299 WGLEQIAYAMEKIQCAVLDSRKNPFLGEAIVHQVLLGLAVSAQKR 343


>gi|319899480|ref|YP_004159577.1| hypothetical protein BARCL_1344 [Bartonella clarridgeiae 73]
 gi|319403448|emb|CBI77016.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 347

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 173/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +  K    S  + + YG D+GL+ E   +F K   +   +PFS V L+A
Sbjct: 1   MAHKKAHE-VDQFLKYFSRSFPIVLIYGPDRGLVCERAQRFAKLTQVAIENPFSTVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   NE  + SLF   ++I + N    K  L  L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLGNEARTLSLFGGDRLIWVSNGDNHKGFLKALKFLITEPPKKSFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  ++ +A+ CY DN   L  LI+E L     ++S EA+Q L  N+G D
Sbjct: 120 LKKGVGLRNIIEMASTAIALPCYADNVHSLNGLIDEILDEFSITLSLEARQCLHQNIGED 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR+EL+KL  Y L+   I  + VK ++ D   L  +E+I+A + G +         +
Sbjct: 180 RLASRSELEKLCLYALKKTHIALEDVKAVVSDVSALSQDEVIDAVLLGDLAGFETYFSRY 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +        +L+   + FQ L+ +    E    +  +++ +    I   ++  ++++LR 
Sbjct: 240 VVINSRFLFILNVAQRNFQQLQLLRYQVEIEGKNSFEVVAQARPPIFFQRKKKVEQALRY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           WN   +   + KI   I  +RK   L + II Q +L +   A +  +
Sbjct: 300 WNLEQILYAMKKIQSAILESRKNPLLNETIIHQLLLELTIIAKRQKD 346


>gi|49476274|ref|YP_034315.1| DNA polymerase III subunit delta [Bartonella henselae str.
           Houston-1]
 gi|49239082|emb|CAF28385.1| hypothetical protein BH16220 [Bartonella henselae str. Houston-1]
          Length = 350

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 169/350 (48%), Gaps = 1/350 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M   ++H+ +    K    S  + + YG D+GL+ E +  F K   I   DPF  V L+A
Sbjct: 1   MVQKKAHE-VDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI K+ +   +E  + SL    ++I + N + +K  LD L+ +I +      I+I++ +
Sbjct: 60  AEIDKDPARLLDEARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E  +  +A+ C+ D+   L  LI+E L   + +++ +A++ LL +LGGD
Sbjct: 120 LKKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            + SR+EL+KL  Y LE   I  + VK ++ D   L  +E+I+  + G +         +
Sbjct: 180 HLVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRY 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
              +     +L    + FQ L+ +    +    +    I + +  I   ++  ++ +L  
Sbjct: 240 ATLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSY 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350
           W +  +   + +I H +  +RK   L + II Q +L +A  A +     K
Sbjct: 300 WGREQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQMTALK 349


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040481|gb|ACT57277.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA
Sbjct: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
           LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE
Sbjct: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD
Sbjct: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF
Sbjct: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI
Sbjct: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
           WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT
Sbjct: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352


>gi|163869289|ref|YP_001610545.1| DNA polymerase III subunit delta [Bartonella tribocorum CIP 105476]
 gi|161018992|emb|CAK02550.1| putative DNA polymerase III [Bartonella tribocorum CIP 105476]
          Length = 346

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 172/345 (49%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ + +       +  + + YG D+GLI E   +F K   +   DPFS + L+A
Sbjct: 1   MAQKKAHE-VDQFLTRFSRAFPIVLIYGPDRGLICERAQRFAKLTKVAIEDPFSTIRLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            +I K+ +   NE  + SLF   ++I I + + +K  L  L+ +I K      I+I++ +
Sbjct: 60  ADIDKDPACLENEARTFSLFGGDRLIWISHAANQKGFLAALKLLIEKPPEKSFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR + E   + +A+ C+ D+   L  LI+E L   +K++S +A++ L  +LG D
Sbjct: 120 LKKGTGLRNVIETAANAMALPCFADDMRSLDGLIDEVLGQFKKTLSLDARRWLHESLGVD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ SR EL+KL  Y L ++ IT + VK I+ D   L  +EII+A + G I       +  
Sbjct: 180 RLVSRGELEKLCLYAL-NVHITLEDVKAIVSDVSALSQDEIIDALLLGDISGFEAHFNRH 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A +     +L    + FQ L+ +    E    +   ++ +    I   ++  ++++++ 
Sbjct: 239 AALQGALFFILSTAQRHFQQLQLLRYQVEVEGKTPVTVVSQARPPIFFQRKKNVEQAVKY 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +   + +I   +  +RK   L + II Q +L +   A + 
Sbjct: 299 WKLEQISYAMERIQSAVLESRKNPLLGEAIIRQALLGLTIIARRQ 343


>gi|222087924|ref|YP_002546462.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84]
 gi|221725372|gb|ACM28528.1| DNA polymerase III, delta subunit [Agrobacterium radiobacter K84]
          Length = 345

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 182/344 (52%), Gaps = 1/344 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I+SH+F     +N   ++ +F+ YG D+GL+ E   Q      +   DPFSL+ L+ 
Sbjct: 1   MSEIKSHEF-DGFLQNAARNYRLFVIYGPDRGLVSERAGQVAGKTGVDLKDPFSLIKLDV 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++Q +     +E+N+  LF  +K++ I   + EK ++D L+ I         +II++ +
Sbjct: 60  GDLQNDAGRLLDEVNAIGLFGGEKLVWIRGAANEKALIDSLQIIADNPPNASFVIIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK + LRK+AE    +  + CY D+   L  LI+  L      IS  A+Q+LL  LGGD
Sbjct: 120 LKKGSGLRKVAEASRKIATVPCYADDGRALNSLIDTELASENLRISPAARQMLLELLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASRNE++KL+ YC  +  I E HV DII D   +  ++ ++A ++G     +      
Sbjct: 180 RIASRNEVRKLALYCRGEGTIEEGHVADIIGDASAISADDAVDAILKGDSDAFLHAMQKI 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            ASK     +L G L++FQLL+ +    +   +   +++Q   +++   ++ I++++LR 
Sbjct: 240 AASKTSMFLVLQGCLRQFQLLDVMRTEMDEKRVPPAQVMQTLGRHLHFRRKPIIEQALRS 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           W    +   ++++   I   R++  LE  I  QT+L     + +
Sbjct: 300 WTAPAIAREMNRLQSAILQTRQRASLEDTIATQTLLATTLQSAR 343


>gi|148559309|ref|YP_001259862.1| DNA polymerase III subunit delta [Brucella ovis ATCC 25840]
 gi|148370566|gb|ABQ60545.1| DNA polymerase III, delta subunit [Brucella ovis ATCC 25840]
          Length = 388

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 42  MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 100

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+++ ++ +  +      I+I++ +
Sbjct: 101 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLVEAVKRLAAEPPQETFILIEAGD 160

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 161 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 220

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 221 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 280

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 281 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 340

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 341 WTGESLTRIMERLQRAVLESRRNAALSVPIIRQGLLAISVESLRNAR 387


>gi|225626436|ref|ZP_03784475.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo]
 gi|237816407|ref|ZP_04595400.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A]
 gi|225618093|gb|EEH15136.1| DNA polymerase III, delta subunit [Brucella ceti str. Cudo]
 gi|237788474|gb|EEP62689.1| DNA polymerase III, delta subunit [Brucella abortus str. 2308 A]
          Length = 388

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 42  MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 100

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 101 DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 160

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 161 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 220

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 221 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 280

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 281 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 340

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 341 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 387


>gi|86359696|ref|YP_471588.1| DNA polymerase III subunit delta [Rhizobium etli CFN 42]
 gi|86283798|gb|ABC92861.1| putative DNA polymerase III, delta subunit protein [Rhizobium etli
           CFN 42]
          Length = 346

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 7/347 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS  N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSAGN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNGLIDAELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCSGLNTVEEHHVSEIIGDASAISVDDAVDAVLSGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDMMRAEMEEKRVQAPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           LR W+   +    +++   I  +R+++ LE ++  QT+L     + +
Sbjct: 297 LRHWSAENIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343


>gi|241206935|ref|YP_002978031.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860825|gb|ACS58492.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 346

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 189/347 (54%), Gaps = 7/347 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKST+N    + +F+ YG D+GL+ E  +Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFESFLQKSTRN----YRIFVIYGPDRGLVSERASQLAGKSGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E+ S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAAYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAESARSVMTIPSYADDSRALNGLIDTELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +E+ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVEDAVDAILGGDLNAFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    +   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQTPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           LR W    +    +++   I  +R+++ LE ++  QT+L     + +
Sbjct: 297 LRQWTAESIARECNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343


>gi|294851286|ref|ZP_06791959.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|294819875|gb|EFG36874.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 171/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+  EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATHGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|23502905|ref|NP_699032.1| DNA polymerase III subunit delta [Brucella suis 1330]
 gi|62290901|ref|YP_222694.1| DNA polymerase III subunit delta [Brucella abortus bv. 1 str.
           9-941]
 gi|82700812|ref|YP_415386.1| DNA polymerase III subunit delta [Brucella melitensis biovar
           Abortus 2308]
 gi|161619971|ref|YP_001593858.1| DNA polymerase III subunit delta [Brucella canis ATCC 23365]
 gi|163844075|ref|YP_001628479.1| DNA polymerase III subunit delta [Brucella suis ATCC 23445]
 gi|189025114|ref|YP_001935882.1| DNA polymerase III subunit delta [Brucella abortus S19]
 gi|254690189|ref|ZP_05153443.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|254694679|ref|ZP_05156507.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696305|ref|ZP_05158133.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702353|ref|ZP_05164181.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|254705058|ref|ZP_05166886.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|254707425|ref|ZP_05169253.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|254709034|ref|ZP_05170845.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|254731222|ref|ZP_05189800.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|256030559|ref|ZP_05444173.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|256158555|ref|ZP_05456445.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|256253964|ref|ZP_05459500.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|256258443|ref|ZP_05463979.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|260169464|ref|ZP_05756275.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|260546162|ref|ZP_05821902.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038]
 gi|260567473|ref|ZP_05837943.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40]
 gi|260755730|ref|ZP_05868078.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|260758954|ref|ZP_05871302.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|260760676|ref|ZP_05873019.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884756|ref|ZP_05896370.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|261215007|ref|ZP_05929288.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|261221106|ref|ZP_05935387.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|261314910|ref|ZP_05954107.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|261316533|ref|ZP_05955730.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|261752916|ref|ZP_05996625.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|261755761|ref|ZP_05999470.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|261758991|ref|ZP_06002700.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|265987607|ref|ZP_06100164.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|265997067|ref|ZP_06109624.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|297247285|ref|ZP_06931003.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|306842828|ref|ZP_07475468.1| DNA polymerase III, delta subunit [Brucella sp. BO2]
 gi|23348936|gb|AAN30947.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62197033|gb|AAX75333.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616913|emb|CAJ12014.1| putative DNA polymerase III, delta subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|161336782|gb|ABX63087.1| DNA polymerase III, delta subunit [Brucella canis ATCC 23365]
 gi|163674798|gb|ABY38909.1| DNA polymerase III, delta subunit [Brucella suis ATCC 23445]
 gi|189020686|gb|ACD73408.1| putative DNA polymerase III, delta subunit [Brucella abortus S19]
 gi|260096269|gb|EEW80145.1| DNA polymerase III delta subunit [Brucella abortus NCTC 8038]
 gi|260156991|gb|EEW92071.1| DNA polymerase III subunit delta [Brucella suis bv. 4 str. 40]
 gi|260669272|gb|EEX56212.1| DNA polymerase III subunit delta [Brucella abortus bv. 4 str. 292]
 gi|260671108|gb|EEX57929.1| DNA polymerase III subunit delta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675838|gb|EEX62659.1| DNA polymerase III subunit delta [Brucella abortus bv. 6 str. 870]
 gi|260874284|gb|EEX81353.1| DNA polymerase III subunit delta [Brucella abortus bv. 9 str. C68]
 gi|260916614|gb|EEX83475.1| DNA polymerase III subunit delta [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919690|gb|EEX86343.1| DNA polymerase III subunit delta [Brucella ceti B1/94]
 gi|261295756|gb|EEX99252.1| DNA polymerase III subunit delta [Brucella pinnipedialis B2/94]
 gi|261303936|gb|EEY07433.1| DNA polymerase III subunit delta [Brucella pinnipedialis
           M163/99/10]
 gi|261738975|gb|EEY26971.1| DNA polymerase III subunit delta [Brucella sp. F5/99]
 gi|261742669|gb|EEY30595.1| DNA polymerase III subunit delta [Brucella suis bv. 5 str. 513]
 gi|261745514|gb|EEY33440.1| DNA polymerase III subunit delta [Brucella suis bv. 3 str. 686]
 gi|262551535|gb|EEZ07525.1| DNA polymerase III subunit delta [Brucella ceti M490/95/1]
 gi|264659804|gb|EEZ30065.1| DNA polymerase III subunit delta [Brucella pinnipedialis M292/94/1]
 gi|297174454|gb|EFH33801.1| DNA polymerase III, delta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|306287022|gb|EFM58533.1| DNA polymerase III, delta subunit [Brucella sp. BO2]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|254718099|ref|ZP_05179910.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|265983052|ref|ZP_06095787.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|306839724|ref|ZP_07472526.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653]
 gi|264661644|gb|EEZ31905.1| DNA polymerase III subunit delta [Brucella sp. 83/13]
 gi|306405184|gb|EFM61461.1| DNA polymerase III, delta subunit [Brucella sp. NF 2653]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W  + +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGDSLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|256370455|ref|YP_003107966.1| DNA polymerase III subunit delta [Brucella microti CCM 4915]
 gi|256000618|gb|ACU49017.1| DNA polymerase III subunit delta [Brucella microti CCM 4915]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   I  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|254713540|ref|ZP_05175351.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
 gi|254716105|ref|ZP_05177916.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261217876|ref|ZP_05932157.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261321274|ref|ZP_05960471.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
 gi|260922965|gb|EEX89533.1| DNA polymerase III subunit delta [Brucella ceti M13/05/1]
 gi|261293964|gb|EEX97460.1| DNA polymerase III subunit delta [Brucella ceti M644/93/1]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEMVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|256060021|ref|ZP_05450203.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
 gi|261323998|ref|ZP_05963195.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
 gi|261299978|gb|EEY03475.1| DNA polymerase III subunit delta [Brucella neotomae 5K33]
          Length = 347

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAINR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   I  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAILESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|17986295|ref|NP_538929.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|225853488|ref|YP_002733721.1| DNA polymerase III subunit delta [Brucella melitensis ATCC 23457]
 gi|256045659|ref|ZP_05448537.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263032|ref|ZP_05465564.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str.
           63/9]
 gi|260562961|ref|ZP_05833447.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|265992081|ref|ZP_06104638.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17981878|gb|AAL51193.1| DNA polymerase iii, delta subunit [Brucella melitensis bv. 1 str.
           16M]
 gi|225641853|gb|ACO01767.1| DNA polymerase III, delta subunit [Brucella melitensis ATCC 23457]
 gi|260152977|gb|EEW88069.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           16M]
 gi|263003147|gb|EEZ15440.1| DNA polymerase III subunit delta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092905|gb|EEZ17080.1| DNA polymerase III subunit delta [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410052|gb|ADZ67117.1| DNA polymerase III subunit delta [Brucella melitensis M28]
 gi|326539769|gb|ADZ87984.1| DNA polymerase III, delta subunit [Brucella melitensis M5-90]
          Length = 347

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARSTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|190893974|ref|YP_001980516.1| DNA polymerase III protein, delta subunit [Rhizobium etli CIAT 652]
 gi|190699253|gb|ACE93338.1| putative DNA polymerase III protein, delta subunit [Rhizobium etli
           CIAT 652]
          Length = 346

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/347 (29%), Positives = 188/347 (54%), Gaps = 7/347 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSLALLTEKPLEATYLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   +V+ +  Y D+   L  LI+  L   +  I+  A+Q LLA +
Sbjct: 117 AGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALLALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +++Q   +++   ++ IL+++
Sbjct: 237 QKISSSKAAIFLVLQACLKQFQLLDTMRAEMEEKRVQAPQVMQTMGRHLHFRRKPILEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           LR W+ + +    +++   I  +R+++ LE +I  QT+L     + +
Sbjct: 297 LRQWSADSIARESNRLQAAILQSRRRQVLEDSIAMQTLLSTTLQSGR 343


>gi|256112381|ref|ZP_05453302.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
 gi|265993816|ref|ZP_06106373.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764797|gb|EEZ10718.1| DNA polymerase III subunit delta [Brucella melitensis bv. 3 str.
           Ether]
          Length = 347

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 172/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     +   DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARSTSSFPVVLLYGPDKGLVNERARRYAAASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDARGIDGVIDDILAEWKMQITLDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  EE+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTEEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|306843473|ref|ZP_07476074.1| DNA polymerase III, delta subunit [Brucella sp. BO1]
 gi|306276164|gb|EFM57864.1| DNA polymerase III, delta subunit [Brucella sp. BO1]
          Length = 347

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 173/347 (49%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H+ +         S  V + YG DKGL+ E   ++     ++  DPF+++ + A
Sbjct: 1   MAQKKAHE-VDSFLARPTSSFPVVLLYGPDKGLVNERARRYAAASKLSLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N   +KK+ + ++ +  +      I+I++ +
Sbjct: 60  DEIEADPAKLADEAGTISMFGGQRLIWIKNAGGQKKLAEAVKRLAAEPPQETFILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ +A+Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAIENASAGMALPCYSDDARGIDGVIDDILAEWKMQIALDARQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+++A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYTRGKERIDIDDVREAVGDVAGLSTDEVVDAVLAGDLPRFEIAFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL   +++FQ ++ +  I +    S   ++      I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLTAAMRQFQQVQALRHIADTERKSASMVVASARPPIFFNRKKLIETAISR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   +  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLTRVMERLQRAVLESRRNAALSVPIIRQCLLAISVESLRNAR 346


>gi|209551497|ref|YP_002283414.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537253|gb|ACI57188.1| DNA polymerase III, delta subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 346

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 186/347 (53%), Gaps = 7/347 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERAAQLAGKTGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E  S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDPLALLAEKPLEAAHLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   S++ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSIMTIPSYADDSRALNTLIDAELSAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNGFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    E   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           LR W    +    +++   I  +R+++ LE ++  QT+L     + +
Sbjct: 297 LRQWTAEAIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343


>gi|153008199|ref|YP_001369414.1| DNA polymerase III subunit delta [Ochrobactrum anthropi ATCC 49188]
 gi|151560087|gb|ABS13585.1| DNA polymerase III, delta subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 174/347 (50%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++++ +         S  V + YG DKGL+ E   +F +   +   DPF+++ + A
Sbjct: 1   MAQKKANE-VDSFLARPTNSFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N + +KK+ + ++ +  +      +++++ +
Sbjct: 60  DEIEADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPLETFVLVEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E  ++ +A+ CY D+   +  +I++ L   +  I+ + +Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENASAGMALPCYSDDSRGIDGVIDDVLAEWKMQITLDGRQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+I+A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEVSFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL+  +++FQ ++ +  I +    S   ++      I   ++ +++ S+  
Sbjct: 240 VKSGTAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAAARPPIFFNRKKLVENSVSR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W    +   + ++   I  +R+   L   II Q +L I+  + +N  
Sbjct: 300 WTGESLARVMERLQRAILESRQNAALAIPIIRQCLLAISVESLRNAR 346


>gi|239833098|ref|ZP_04681427.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825365|gb|EEQ96933.1| DNA polymerase III, delta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 175/347 (50%), Gaps = 1/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++++ +         S  V + YG DKGL+ E   +F +   +   DPF+++ + A
Sbjct: 1   MAQKKANE-VDSFLARPTSSFPVVLLYGPDKGLVSERARRFAEASKLPLDDPFAVIRMEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI+ + +   +E  + S+F  +++I I+N + +KK+ + ++ +  +      +++++ +
Sbjct: 60  DEIEADPAKLADEARTISMFGGQRLIWIKNAAGQKKLAEAIKLLATEPPQETFVLVEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR   E   + +A+ CY D+   +  +I++ L   +  I+ + +Q+L A+LGGD
Sbjct: 120 LKKGAGLRSAVENAPAGMALPCYSDDSRGIDGVIDDVLAEWKIQITLDGRQLLRASLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL  Y      I    V++ + D   L  +E+I+A + G +    +  D  
Sbjct: 180 RLATRGELEKLCLYARGKERIDIDDVREAVGDVAGLSTDEVIDAVLAGDLPRFEISFDRV 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + S      LL+  +++FQ ++ +  I +    S   ++  T   I   ++ +++ ++  
Sbjct: 240 VKSGTAPFLLLNTAMRQFQQVQTLRHIADTERKSASVVVAATRPPISFNRKKLIENAVSR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W+   +   + ++   +  +R+   L   II Q +L I+  A +N  
Sbjct: 300 WSGESLARVMERLQRAVLESRQNASLAIPIIRQCLLAISVEALRNAR 346


>gi|116254458|ref|YP_770296.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259106|emb|CAK10217.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 346

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/347 (29%), Positives = 187/347 (53%), Gaps = 7/347 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E  +       +   DPFSL  
Sbjct: 1   MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERASLLAARSGVALDDPFSLTK 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++QK+     +E+ S  LF  +K+I I   + EK ++D L  +  K +    +I++
Sbjct: 57  LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAASLIVE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK + LRK AE   SV+ I  Y D+   L  LI+  L   +  I+  A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNALIDTELGAEKLGITPAARQALIALI 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDRIASRNE++KL+ YC     + E HV +II D   + +++ ++A + G +   +   
Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNAFLHAM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +SK     +L   L++FQLL+ +    +   +   +I+Q   +++   ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQPPQIMQTMGRHLHFRRKPIIEQA 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           LR W    +    +++   I  +R+++ LE ++  QT+L     + +
Sbjct: 297 LRQWTAESIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 343


>gi|222150241|ref|YP_002551198.1| DNA polymerase III subunit delta [Agrobacterium vitis S4]
 gi|221737223|gb|ACM38186.1| DNA polymerase III, delta subunit [Agrobacterium vitis S4]
          Length = 347

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 184/350 (52%), Gaps = 7/350 (2%)

Query: 1   MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  ++SH+F   +QKS ++    + +F+ YG D GL+ E      K+  +   DPFS++ 
Sbjct: 1   MVEVKSHEFDGFLQKSVRH----YKMFLVYGPDVGLVAERAAALAKSTGVALDDPFSVIR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L++ ++Q +     +E+N+  LF   +++ I  ++ EK V+D L+ +      +  +I++
Sbjct: 57  LDSGDLQSDPGKLLDEMNALGLFGGDRLVWIRGIANEKSVVDGLQILAKDPPDSSCLILE 116

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           + ++KK +  RKIAE   ++  I CY D+   +  LI+       K ++  A+ +L  +L
Sbjct: 117 AGDLKKGSATRKIAEPARNIAVIPCYQDDARAINALIDAEFSAAVKRLTPAARSLLSESL 176

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GGDR ASRNE+ KL  YCL D L+ E HV+ II D   +  +E ++A + G     +   
Sbjct: 177 GGDRRASRNEISKLLLYCLHDDLVDETHVEQIIGDASAVSTDEAVDAVLAGNSDALLHAV 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                SK P   +L G L++FQLL+ +    +       +++Q   + +   ++ + ++S
Sbjct: 237 QKIATSKTPMFLVLQGCLRQFQLLDIMRSEMDEKRQQAGQVMQTLGRQVHFKRKPLFEKS 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           L+ W  + +   + ++   I  +R++  LE ++  QT+L I   + + + 
Sbjct: 297 LKNWPSDALSVEMRRLQAAILASRRQPSLEDSLSLQTLLAITLQSARRSR 346


>gi|325294120|ref|YP_004279984.1| DNA polymerase III, delta subunit [Agrobacterium sp. H13-3]
 gi|325061973|gb|ADY65664.1| putative DNA polymerase III, delta subunit [Agrobacterium sp.
           H13-3]
          Length = 345

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 184/346 (53%), Gaps = 1/346 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I+SH+F ++  +N      VF+ YG D+GL+ E  N   K   I   D F+ + L+A
Sbjct: 1   MTEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERANLIAKKTGIDPDDAFASLKLSA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++Q +     +E+N+  LF  +K++ I++ S EK ++D L+ +         +II++ +
Sbjct: 60  SDLQGDPGRLLDEVNAIGLFGGEKLVWIKSASAEKALVDALQILAETPPEASFLIIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRKIAE   S+ AI CY D+   L  LI++ L      I+  A+Q L+  LGGD
Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSADNLRIAPAARQRLIEQLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASRNE++KL+ YC    +I E  V  II D   +  ++ ++A ++G            
Sbjct: 180 RIASRNEIRKLALYCRGAEVIEEDDVLAIIGDASTVSADDAVDAILKGDRNAFFHATQKI 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           ++SK P   +L G L++FQLL+++    +       +++Q   ++I   ++ +++ +LR 
Sbjct: 240 VSSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPVIERALRT 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           W    +   ++++   I  +R+++ LE ++   T+L     + +  
Sbjct: 300 WQPAAIAREMNRLQAAILQSRQRQSLEDSVALLTLLSTTLQSGRGG 345


>gi|15889999|ref|NP_355680.1| DNA polymerase III subunit delta [Agrobacterium tumefaciens str.
           C58]
 gi|15157968|gb|AAK88465.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 345

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 185/346 (53%), Gaps = 1/346 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I+SH+F ++  +N      VF+ YG D+GL+ E      K   I   D F+ + L A
Sbjct: 1   MAEIKSHEF-ERFAENPAERFRVFVLYGPDRGLVSERAGLIAKKTGIDPDDAFASLKLTA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++Q +     +E+N+  LF  +K++ +++ S EK ++D L+ +         +II++ +
Sbjct: 60  SDLQGDPGRLLDEVNAIGLFGGEKLVWVKSASAEKALVDALQILADTPPEASFLIIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRKIAE   S+ AI CY D+   L  LI++ L      I+  A+Q L+  LGGD
Sbjct: 120 IKKGTGLRKIAEPARSIAAIPCYADDARSLNALIDQELSANNLRIAPAARQRLIEQLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASRNE++KL+ YCL   +I E  +  II D   +  ++ ++A ++G            
Sbjct: 180 RIASRNEIRKLALYCLGADVIEEDDILAIIGDASTVSADDAVDAILKGDRNAFFHATQKI 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           ++SK P   +L G L++FQLL+++    +       +++Q   ++I   ++ I++ +LR 
Sbjct: 240 ISSKTPIFLVLQGCLKQFQLLDQMRAEMDEKKQQAGQVMQTLGRHIHFRRKPIIERALRT 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           W    +   ++++   I  +R+++ LE+++   T+L     + +  
Sbjct: 300 WQPAAIAREMNRLQAAILQSRQRQSLEESVALLTLLSTTLQSGRGG 345


>gi|150398392|ref|YP_001328859.1| DNA polymerase III subunit delta [Sinorhizobium medicae WSM419]
 gi|150029907|gb|ABR62024.1| DNA polymerase III, delta subunit [Sinorhizobium medicae WSM419]
          Length = 343

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 181/345 (52%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I+SH+F     +     + +F+ YG D+GL+ E      +   I   DPF++V ++A
Sbjct: 1   MSEIKSHEF-DNFLQRSAAGYRLFLLYGPDRGLVSERATALAETFGIPLDDPFAVVKMDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +Q    +  +E+N+  LF  +K++ +   STEK ++D L+ +         +I+++ +
Sbjct: 60  TGLQG-AGSLLDEVNAIGLFGGEKLVWMRGASTEKALIDALQFLASDPPVGARLIVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK+ E   SV +I+CY D+   L  LI++ L      IS   ++ L+  LGGD
Sbjct: 119 LKKGAALRKVGESSRSVASIACYSDDARGLQALIDKELSDAGLRISPAGRERLMDALGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASRNEL+KL+ YCL   ++ E  V  I+ D   + +++ ++A ++G     +      
Sbjct: 179 RMASRNELRKLALYCLGKDMVDEVDVLGIVGDASAISVDDAVDAVLKGDPDALLHAMKKI 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             SK P   +L   L++FQ L+ +    + +     +++    + +   ++ +++ +L+ 
Sbjct: 239 TTSKTPPFLVLQACLRQFQQLDVMRAEMDANRQPPAQVVATLGRGLHFRRKPVVEAALKH 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +R  L ++   I+ +R ++ LE++++ Q +L I   + + 
Sbjct: 299 WTAPAIRRELSRLQSTIYQSRSRQSLEESLVIQNLLAITIQSARR 343


>gi|163757460|ref|ZP_02164549.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43]
 gi|162284962|gb|EDQ35244.1| hypothetical protein HPDFL43_18657 [Hoeflea phototrophica DFL-43]
          Length = 342

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 1/343 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I++H+F     +       + + YG D+GL+ E   Q      +   D FS++ L A
Sbjct: 1   MAQIKNHEF-AGFVRRQGTPFRIVLVYGPDRGLVSERAAQVAAKTGVDLSDDFSVLKLEA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++  +     +E  + SLF   +++ I+N   E+ ++D +  +   +     ++I++ +
Sbjct: 60  SDLSGDPGRLADEFGAISLFGGDRLVWIKNAGNERGLVDAVAAVSQSDPGTSHLLIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK  E   + LAI CY D+   +  LI+E L     +I  EA+Q L   LGGD
Sbjct: 120 LKKGAGLRKTIEAAKTALAIPCYADDARGVQALIDEELGGAGLTIQGEARQRLSQLLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL+ YC     +T+  V + I D   L +++ I A   G         +  
Sbjct: 180 RLASRGELKKLALYCHGSGTVTDADVVEAIGDVAALSVDDAIEAVFSGDPGRLEAALERI 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           LASK     +L G + + + L+ +  + E  +    +++    + I   ++ I++ +LR 
Sbjct: 240 LASKTSVFLVLRGCMVQLEQLDGMRSLVEGHSRQPAQVMADKGRGIHFKRKPIVERALRH 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           W    +   ++++   +   RK+  LE +I  Q +L     + 
Sbjct: 300 WTLKAINAEMYRLAQAVLETRKRPQLEASIARQALLRTCLLSR 342


>gi|13473770|ref|NP_105338.1| DNA polymerase III subunit delta [Mesorhizobium loti MAFF303099]
 gi|14024521|dbj|BAB51124.1| mlr4475 [Mesorhizobium loti MAFF303099]
          Length = 347

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 165/344 (47%), Gaps = 1/344 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++ + +            + + YG D+GL+ E    F +   +   DPFS+V L  
Sbjct: 1   MAQKKAFE-VDSWLARPDARISIVLLYGPDRGLVSERAKAFAEKTGLPLDDPFSVVRLEG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+ ++     +E  +  +FS ++++ + N + +K + + ++ +  +   + II+I++ +
Sbjct: 60  SEVDRDEGRLLDEARTVPMFSDRRLLWVRNATGQKALAEDVKALTAEPARDAIILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR + E   + +A+ CY D    +  +I++ L     S++ EA+Q L  NLGGD
Sbjct: 120 LKKGVGLRAVVEGADNAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR E++KL  Y      I  + V+ +  D      ++ ++A ++GK+ +        
Sbjct: 180 RLASRGEIEKLILYAHGQKEIGLEDVRAMSGDVSGTSFDDAVDALLEGKVGDFDTAFTRH 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             S  P   +L   +++ Q ++ +    +    +   ++      +   +R +++++L  
Sbjct: 240 CQSGGPPFLVLSSAMRQLQQIQIMRGQMDSGGRNAASVVAAARPPVFFSRRKLVEKALER 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           W+ + +   L ++   +   RK+  L + +  Q +L IA  + +
Sbjct: 300 WSSDALSRALTRLQTAVLQTRKRPDLSEALARQALLGIAVESAR 343


>gi|227823851|ref|YP_002827824.1| DNA polymerase III subunit delta [Sinorhizobium fredii NGR234]
 gi|227342853|gb|ACP27071.1| DNA polymerase III, delta subunit protein [Sinorhizobium fredii
           NGR234]
          Length = 343

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 183/345 (53%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ ++SH+F          ++ +F+ YG D+GL+ E   Q      +   DPF+LV L+A
Sbjct: 1   MSEVKSHEF-DGFLNRGASNYRLFLLYGPDRGLVSERAAQLAAGCGVALDDPFALVKLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+Q+      +E+N+  LF  +K++ I   ++EK + + L+ +         +II++ +
Sbjct: 60  SELQQ-AGRVLDEVNAIGLFGGEKLVWIRGAASEKAIAEALQILADTPPTGSTLIIEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRKI E   +V +I+CY D+   L  LI++ L      I   A++ LL  LGGD
Sbjct: 119 LKKGAALRKIGETSRAVASIACYSDDARSLQALIDKELAEAGLRIGPAARERLLEALGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASRNEL+KL+ YC    +I E+ V  I+ D   + +++ ++A ++G +   +      
Sbjct: 179 RMASRNELRKLALYCRGKDMIDEEDVLAIVGDASAISVDDAVDAVLKGDVDALLHAMKKI 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            +SK P   +L   L++FQ L+ +    + S     +++    + +   ++ I++ +L+ 
Sbjct: 239 TSSKTPPFLVLQACLRQFQQLDVMRAEMDTSRQPANQVVASLGRGLHFRRKPIVEAALKH 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +R  L ++   I+ +R ++ LE +++ Q +L IA  + + 
Sbjct: 299 WTAPAIRRELSRLQATIYQSRARQSLEDSLVLQNLLAIAIQSARR 343


>gi|15967086|ref|NP_387439.1| DNA polymerase III subunit delta [Sinorhizobium meliloti 1021]
 gi|307302548|ref|ZP_07582305.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C]
 gi|307316121|ref|ZP_07595565.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83]
 gi|15076359|emb|CAC47912.1| Putative DNA polymerase III, delta subunit [Sinorhizobium meliloti
           1021]
 gi|306897961|gb|EFN28703.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti AK83]
 gi|306903218|gb|EFN33808.1| DNA polymerase III, delta subunit [Sinorhizobium meliloti BL225C]
          Length = 343

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 179/345 (51%), Gaps = 2/345 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ ++SH+F     +     + +F+ YG D+GL+ E  ++   +  I   DPF++V L+A
Sbjct: 1   MSEVKSHEF-DSFLQRSAAIYRLFLLYGPDRGLVSERASELAGSFGIPLDDPFAVVKLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +Q    +  +E+N+  LF   K++ +   S EK + + L+ +         +I+++ +
Sbjct: 60  ATLQG-AGSVLDEVNAIGLFGGDKLVWVRGASAEKALTEALQILAADPPAGARLIVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK+ E   SV +I+CY D+   L  L++  L      I   A++ L+  LGGD
Sbjct: 119 LKKGAALRKVGETSRSVASIACYSDDIRGLQALVDTELSEAGLRIGPAARERLVEALGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASRNEL+KL+ YC    ++ E  V  I+ D   + +++ ++A ++G     +      
Sbjct: 179 RMASRNELRKLALYCRGKDMVDEDDVLGIVGDASAISVDDAVDAVLKGDADALLHAMKKI 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             SK P   +L   L++FQ L+ +    + S  S  +++    + +   ++ +++ +L+ 
Sbjct: 239 TTSKTPPFLVLQACLRQFQQLDVMRAEMDASRQSAGQVVASLGRGLHFRRKPVVEAALKH 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           W    +R  L ++   I+ +R ++ LE++++ Q +L I   + + 
Sbjct: 299 WTGPAIRRELGRLQATIYQSRSRQSLEESLVIQNLLAITIQSARR 343


>gi|319780619|ref|YP_004140095.1| DNA polymerase III, subunit delta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166507|gb|ADV10045.1| DNA polymerase III, delta subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 347

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 162/344 (47%), Gaps = 1/344 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++++ +            + + YG D+GL+ E    F     +   DPFS+V L  
Sbjct: 1   MAQKKAYE-VDGWLAKPDQRISIVLLYGPDRGLVSERAKAFAGKTGLPLDDPFSVVRLEG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+ ++     +E  +  +FS ++++ + N S +K + D ++ +  +   + II+I++ +
Sbjct: 60  SEVDRDEGRLLDEARTVPMFSDRRLLWVRNASGQKALADDVKALTAEPARDAIILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR I E   + +A+ CY D    +  +I+  L     S++ EA+Q L  NLGGD
Sbjct: 120 LKKGVGLRAIVEAADNAMALPCYADEARDIDTVIDGELGRAGMSMTMEARQALRRNLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR E++KL  Y      I  + VK +  D      ++ ++A ++GKI +        
Sbjct: 180 RLASRGEIEKLVLYAHGQTEIGLEEVKAMSGDVSGASFDDAVDALLEGKIGDFDTAFTRH 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             S      +L   +++ Q ++ +    E  N +   ++      +   +R +++++L  
Sbjct: 240 CQSGGQPFLVLSSAMRQLQQIQIMRGQMESGNRNAASVVAAARPPVFFSRRKLVEKALER 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           W+   +   L ++   +   R++  L   +  Q +L IA  + +
Sbjct: 300 WSTEALGRALTRLQTAVLQTRRRPDLSVALARQALLGIAVESSR 343


>gi|260467204|ref|ZP_05813381.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029057|gb|EEW30356.1| DNA polymerase III, delta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 348

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 162/344 (47%), Gaps = 1/344 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++ + +            + + YG D+GL+ E    F     +   DPFS+V L  
Sbjct: 1   MAQKKAFE-VDSWLAKPDARISIVLLYGPDRGLVSERAKAFAAKTGLPLDDPFSVVRLEG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+ ++     +E  +  +FS ++++ + N S +K + D ++ +  +   + II+I++ +
Sbjct: 60  SEVDRDEGRLLDEARTVPMFSDRRLLWVRNASGQKALADDVKALAAEPARDAIILIEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR + E     +A+ CY D    +  +I++ L     S++ EA+Q L  NLGGD
Sbjct: 120 LKKGVGLRAVVEAADIAMALPCYADEARDIDTVIDDELRKAGMSMTLEARQALRRNLGGD 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR E++KL  Y      I  + V+ +  D      ++ ++A ++GK+ +        
Sbjct: 180 RLASRGEIEKLVLYAHGQKEIGLEEVRAMSGDVSGASFDDAVDALLEGKVGDFDTAFTRH 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             S  P   +L   +++ Q ++ +    E    +   ++      +   +R +++++L  
Sbjct: 240 CQSGGPPFLVLSSAMRQLQQIQVMRGQMEQGGRNAASVVAGARPPVFFSRRKLVEKALER 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           W+ + +   L ++   +   R++  L   +  Q +L IA  + +
Sbjct: 300 WSSDALGRALTRLQTAVLQTRRRPDLSAALARQALLGIAVESAR 343


>gi|254501308|ref|ZP_05113459.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11]
 gi|222437379|gb|EEE44058.1| DNA polymerase III, delta subunit [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 163/338 (48%), Gaps = 3/338 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+T+++ + I +   +      V + +G D GL+ E  ++     S    DPF+L+ ++A
Sbjct: 1   MSTLKAAE-IDRFVASPPDGGGVVLVFGPDTGLVSERASRLVAKASEGDSDPFNLIKIDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+  + S   +E+ +  LF  ++I+ +++    K ++  ++ ++  +    ++++++ +
Sbjct: 60  SELSSDSSRLIDEVLTVPLFGGRRIVWVKDAGG-KNLVPSVDPVLKLDDWQTLVVLEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRK+ E     +A+ CY DN   +  LI+E       +IS+EA+  L + LGGD
Sbjct: 119 IKKGVGLRKLIEPHKKAVALPCYADNDRGIDHLIDEETREAGLTISREARAALHSLLGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL  Y ++   I  + V+ II D       E+I+A   G +       +  
Sbjct: 179 RMASRGELKKLCLYAMQKERIDTEDVEAIIGDASAFETSELIDAAAGGDLSTLDHGLERL 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +   +  + +  L+ FQ L ++ I  +    S ++++      I   ++    + LRI
Sbjct: 239 TDAGSKASVIANQALKHFQSLHRMRIEIDA-GKSAQQVVDGQRPPIFFSRKPKFSQQLRI 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           W    +   +  +     ++R    L   ++ + +L +
Sbjct: 298 WTIKDLERAMGILSEATRVSRLNDNLGVPVLSEALLTV 335


>gi|118591436|ref|ZP_01548834.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614]
 gi|118436108|gb|EAV42751.1| DNA polymerase III subunit delta [Stappia aggregata IAM 12614]
          Length = 346

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 160/338 (47%), Gaps = 3/338 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ + I +   N   +  V + +G D GL+ E   +     S    DPF+LV L+A
Sbjct: 1   MTVLKAAE-IDRFVANPPEAGGVVLIFGPDTGLVSERAARLVNKASEGESDPFNLVKLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++  + +   +E+ +  LF  ++I+ +++ S  + +   +E ++ ++    +++++  +
Sbjct: 60  SDLGSDPNRLIDEVLTVPLFGGRRIVWVKDAS-SRNLNPAVEPVLKQDDWQTLVVLEGGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           IKK   LRK+ E     +A+ CY DN   +  LI+E       S+++EA+  L + LGGD
Sbjct: 119 IKKGVGLRKLIEPHKRAVALPCYADNDRGIDQLIDEETREAGLSVTREARAALHSLLGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL  Y L    I    V+ II D     + E+I+A   G +       +  
Sbjct: 179 RMASRGELKKLCLYALNKGRIDSDDVEAIIGDASAFEMSELIDAAASGDLALLDHGLERL 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +   +  + +  L+ FQ L ++ I  E    + + ++      I   ++    + LRI
Sbjct: 239 AEAGSKASVIANQTLKHFQHLHRMRIDIE-QGKNAQAVVDGQRPPIFFSRKPRFTQQLRI 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           W+   +   +  +     ++R    L   ++ + +L +
Sbjct: 298 WSLTDLERAMDILSEATRISRLNDALGVPVLSEALLKL 335


>gi|110635645|ref|YP_675853.1| DNA polymerase III subunit delta [Mesorhizobium sp. BNC1]
 gi|110286629|gb|ABG64688.1| DNA polymerase III, delta subunit [Chelativorans sp. BNC1]
          Length = 345

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 172/347 (49%), Gaps = 2/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++H  +         +  V + YG D+GL+ E    F +   +   DPFS+V ++A
Sbjct: 1   MAQKKAHD-VDGWLARPDSTIVVVLLYGPDRGLVSERARLFAQKSGLPLDDPFSVVKIDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E         +E  +  +F+ ++++ +  + ++  +   +  ++ +   + +++I++ +
Sbjct: 60  AE-ADQPGRLLDEARTVPMFADRRLVWVRGVGSQSAIAADIAALVEEPPSDCLVLIEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK+ +LR   E+    +A+ CY D+   +  +I++ L   + +I+ +A+ +L ANLGGD
Sbjct: 119 LKKSASLRTTVERGDRAIALPCYSDDSRSIDAVIDDVLSKAKLTITLDARHLLKANLGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+A+R EL+KL+ YC     +T   ++ +I D   + ++E ++A + G+I +   L    
Sbjct: 179 RLATRGELEKLALYCAGASEVTADDIRALIGDVSGISVDEAVDAIMTGRIADFDHLFTRH 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +A   P+  +L   L+  Q L+ +    E    S    +      +   +R+ ++++++ 
Sbjct: 239 VAGGSPAFLMLSAALRHVQGLQLMREQVEAQGKSPAAAVASARPPVFFARRSAVEQAVQR 298

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           WN+ ++     ++   I  +R+   + + +  Q +L +A    +   
Sbjct: 299 WNQAMLHAAAERLQGAILKSRQHPAVAEPVSRQALLALAIEGARARR 345


>gi|254472510|ref|ZP_05085910.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062]
 gi|211958793|gb|EEA93993.1| DNA polymerase III, delta subunit [Pseudovibrio sp. JE062]
          Length = 346

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 3/349 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ + I +   N   S  + + YG D GL+ E         +    DPFS V L+A
Sbjct: 1   MVALKAAE-IDRYIANPPDSVNLILVYGPDTGLVNERAQALISKAAAENDDPFSQVKLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            +I  + S   +E  +  LF  ++ I +    T K VL  +E ++  N     I+I++ +
Sbjct: 60  ADIAADPSRLVDEALTIPLFGGRRTIWVRENGT-KSVLPAVEPLLKNNDFTAFIVIEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK + LRK  E   + +AI C+ D    +  L++E        ISKEA+  L   LG D
Sbjct: 119 LKKTSGLRKKIEASKTAVAIPCFADTARDVDRLVDEETQSAGLQISKEARMALHTLLGAD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASR EL+KL  Y + D  I   HV++II D     ++E+I+A   G         +  
Sbjct: 179 RIASRGELKKLCLYAMNDNRIEVHHVEEIIGDASAFAMDELIDAAALGDTVTLDHGLERL 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            AS      +    L+ FQ+L    + K    I+ E +I      I   +R+ +   + I
Sbjct: 239 SASGTDVGVIASQALRHFQMLHLCRL-KANQRIAVEDVIGGIRPPIFWKRRSKIVRQVEI 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349
           WN++ +   L +++  +  AR    L   I+  T+L IAQ A  +N   
Sbjct: 298 WNEDFLERALIRLNDAVKEARFNANLSTAIVSHTLLAIAQVAKASNRRR 346


>gi|307943447|ref|ZP_07658791.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4]
 gi|307773077|gb|EFO32294.1| DNA polymerase III, delta subunit [Roseibium sp. TrichSKD4]
          Length = 347

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 155/350 (44%), Gaps = 3/350 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ +   +   N      V   +G D GL+ E   Q  K  S    DPF+L  ++A
Sbjct: 1   MTALKASE-ADRFVANPPTGGGVIFIFGPDTGLVSERATQLVKKASEGDSDPFNLAKIDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            EI  + +   +E  +  LF  ++II I+  S  K +   L+ ++  +    +I+I+  +
Sbjct: 60  SEIVSDPTRLIDEFLTIPLFGGRRIIWIKETSG-KNLSPALDPVLKLDDWPSLIVIEGGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK+ E     +AI CY D    +  LI+E       +IS+EA+  L + LGGD
Sbjct: 119 VKKGVGLRKLVESHKRAVAIPCYSDGDRTIDQLIDEETRAANITISREARAALHSLLGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL  Y L    I    +  +I D       E+I+A   G +       +  
Sbjct: 179 RMASRGELKKLCLYTLGKERIETDDIAAVIGDASAFETSELIDAAALGDLATLDHGLERL 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +   +  + +  L+ FQLL ++    +       +++      I   +R  +   L+I
Sbjct: 239 SEAGANASVIANQALKHFQLLHRMRADVD-QGRPASQVVDGQRPPIFFARRPGIDRQLQI 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350
           W    + + L  +     ++R    L   ++ + +L +A+ A   +   +
Sbjct: 298 WATKDLEKGLSILADATRISRLNDNLGVPVLSEALLTVARAAKARSTRRR 347


>gi|90421006|ref|ZP_01228910.1| putative DNA polymerase III, delta subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334784|gb|EAS48560.1| putative DNA polymerase III, delta subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 346

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 171/344 (49%), Gaps = 3/344 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  +  + ++        S  V + YG D GL+ E   +  +   +   DPF+ V L A
Sbjct: 1   MAQKKPGE-VEAFLSRPDFSFPVILLYGPDPGLVSERSEKVAELSGVDRSDPFAAVTLAA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E++K+I   ++E  + S+F   ++I +      K + + + E+  K +   I+I+++ +
Sbjct: 60  DELEKDIGRLYDEAQTVSMFGGTRLIRVRGAGNGKSLAEAVAELSAKKLDGAIVILEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK++ LR  AE+    +A+ CY D    +  +I+E +     +I +EA+  L A LG +
Sbjct: 120 LKKSSALRANAERGKFAIALPCYQDEGRAIDKMIDEEMRESGLTIGREARDELRARLGAN 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           RIASR E++KL  Y L    +TE+ V+ I+ D     +EE I+A   G++     L D  
Sbjct: 180 RIASRGEIRKLCLYALGTSSVTEEDVRAIVGDVSADTLEETIDAAASGEVRRLPHLIDRL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +++   +  L    L+ FQ L+ +  + E       +++++        +++ ++ +L  
Sbjct: 240 VSAGTATFQLHQQLLRYFQQLQTMREMVEKGGEPVGRVVERRRP--HFRRKHAMEVALSA 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           W  + +   L +ID  I  +RK+  L   I  QT+L +A  A +
Sbjct: 298 WPLDAITTILQRIDADILASRKEGGLALTITRQTLLDVAVEAAR 341


>gi|304392704|ref|ZP_07374644.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130]
 gi|303295334|gb|EFL89694.1| DNA polymerase III, delta subunit [Ahrensia sp. R2A130]
          Length = 350

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 165/349 (47%), Gaps = 3/349 (0%)

Query: 1   MATIESHKFIQKSTK--NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA +++ +  ++          H +++ YG D GL FE  ++  K+      D F+ V L
Sbjct: 1   MAQLKASEADRRIAAMEKSGPDHALYLIYGPDHGLAFERASRIAKSSGADMEDAFATVRL 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
           +A +   + S   +E ++ S+F  K++I +   +T K +L  +E ++     + ++II++
Sbjct: 61  DADDAASDPSRLADEAHTVSMFGGKRLIWVRG-TTRKNLLKAVEPLLALPPEDAVVIIET 119

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            ++KK   LR   EK    LA+ CY D    +  L+ + +    K+I +E  + L+  LG
Sbjct: 120 GDLKKTAALRSRIEKSPHALAVPCYADGGAAVSQLVADMVQQAGKTIDRETARALVDLLG 179

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           GDR+ASR E+ KL  Y  ED  IT  HV  I+ D   L I+ +++A   G +        
Sbjct: 180 GDRLASRGEIDKLLLYTGEDREITMDHVSTIVGDAASLAIDSVVDAAATGDMAKMEKTTK 239

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             LA       +++  L+ FQ+L         S      II      I   +++ +  +L
Sbjct: 240 RLLAQGTAPFLIINACLRHFQMLHMARARMASSRQDAGSIIGGLRPPINFQRKDAVVRAL 299

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           R+W+   + +T  ++D  +   R    LE+ ++   +L I + A + + 
Sbjct: 300 RLWSGPDLEKTSRRLDAVLLECRSNAALEQPLLMTMLLAITRQAQRLSR 348


>gi|114705822|ref|ZP_01438725.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506]
 gi|114538668|gb|EAU41789.1| hypothetical protein FP2506_15189 [Fulvimarina pelagi HTCC2506]
          Length = 345

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 3/347 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  ++ + +         S+ V + YG D GL+ E       +  I   DPF+ V L+A
Sbjct: 1   MAQKKAGE-VDAFLSRPDFSYPVILLYGPDPGLVSERAATIAGHSGIDPSDPFASVSLSA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E++K+I   ++E  + SLF   ++I +    T K + + +  +  K +   I+I+++ +
Sbjct: 60  DELEKDIGRLYDEALTVSLFGGTRLIRVRGAGTGKVLSEAVATLSEKKLEGAILIVEAGD 119

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +K+N  LR   E+    +A+ CY D    L  +I+E        I +E ++ L + LG +
Sbjct: 120 LKRNAALRLSVERAKFAIALPCYQDEGRALDRMIDEEFSRAGLQIDREGREELKSRLGAN 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR E++KL  Y      +T   V  I+ D     ++E I+ATI G +     L +  
Sbjct: 180 RMASRGEVEKLCVYAYGTERVTADDVAAIVGDVSADAVDEAIDATISGAVKKLPALIERL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +  P   L    L+  Q L  +  I E       +++++        ++  L+ +L  
Sbjct: 240 TDAGTPIFQLQQNLLRTIQQLTAMREIVERQGEPVSRVVERRRP--HFKRKAALETALAS 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           W  + +  T  +I+  I  +RK+  +   I  Q +L IA  A KN  
Sbjct: 298 WPLDALARTARRIETDILRSRKENQMALTITRQMMLSIAVEAAKNRR 344


>gi|328541705|ref|YP_004301814.1| DNA polymerase III, delta subunit [polymorphum gilvum SL003B-26A1]
 gi|326411457|gb|ADZ68520.1| DNA polymerase III, delta subunit [Polymorphum gilvum SL003B-26A1]
          Length = 347

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 154/350 (44%), Gaps = 3/350 (0%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ + I++       +  + + YG D GL+ E      ++ S    DPFSL  L+A
Sbjct: 1   MVALKATE-IERFVARPPAAAAIILVYGPDTGLVSERAQALVESASDGSDDPFSLARLDA 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++  +     +E  +  LF  +++I + +    + ++  +  ++    C   ++I++ +
Sbjct: 60  ADLASDPDRLIDEALTVPLFGGRRVIWVRDAGG-RNLVPAVAPLLKLADCPAFVVIEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LRK+ E     +A+ CY D    +  LI+E   +   +IS+EA+  L   LG D
Sbjct: 119 LKKGTGLRKLFEADRRAVALPCYADTGRDIDYLIDEETRLAGLTISREARAALHGLLGAD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR EL+KL  Y      I    +  II D     + E+I+A   G +       +  
Sbjct: 179 RMASRGELRKLCLYAHGRQRIDTDDIAAIIGDASAFEMSELIDAAAGGDLAALDHGLERL 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A    +  +    L  FQ L ++    +       +I+      +   ++  L   +++
Sbjct: 239 EAEGGNASVIAGQALVHFQGLHRMRAEFDA-GTPAAQIVDAARPPVFFKRKAALARQIQL 297

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350
           W+   + + + ++   +  AR    +   ++ + +L +A+ A    +  +
Sbjct: 298 WSAADLDKAMERLAEAMRTARLNDRIGMPVLSEALLTLARVARARGSARR 347


>gi|218463266|ref|ZP_03503357.1| DNA polymerase III subunit delta [Rhizobium etli Kim 5]
          Length = 300

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 157/297 (52%)

Query: 48  TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK 107
             +DPFSL  L+  ++QK+     +E  S  LF  +K+I I   + EK + D L  +  K
Sbjct: 1   ALNDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLADSLAHLAEK 60

Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
            +    +I+++ ++KK + LRK AE   +V+ +  Y D+   L  LI+  L   +  I+ 
Sbjct: 61  PLEATYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLIDAELGAEKLGITP 120

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
            A+Q L+A +GGDRIASRNE++KL+ YC     + E HV +II D     +++ ++A + 
Sbjct: 121 AARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDASATSVDDAVDAILG 180

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           G +   +       +SK     +L   L++FQLL+ +    E   +   +++    +++ 
Sbjct: 181 GDLNGFLHAMQKISSSKTAIFLVLQACLKQFQLLDTMRAEMEEKRLQAPQVMHTMGRHLH 240

Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
             ++ IL+++LR W+   +    +++   I  +R+++ LE ++  QT+L     + +
Sbjct: 241 FRRKPILEQALRQWSAESIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 297


>gi|154245395|ref|YP_001416353.1| DNA polymerase III subunit delta [Xanthobacter autotrophicus Py2]
 gi|154159480|gb|ABS66696.1| DNA polymerase III, delta subunit [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 159/325 (48%), Gaps = 4/325 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +G D GL+ E      +      HDPF+LV L   +I  +     +E ++  LF  
Sbjct: 22  VVLIFGPDTGLVHERAQGLVRRAVPDAHDPFALVRLEGDDISSDPRRLIDETSTIGLFGG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++ +   +  + ++  L+ ++    C+ ++++++ ++KK   LR + E   + LAI+C
Sbjct: 82  ERVVWVR--AGSRNIVPALQPVLAGR-CDALVVVEAGDLKKGAPLRALCENAPNALAIAC 138

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y D+   L  L++  +     +I ++A+ +L++ +GGDR+ASR E+ KL  Y      ++
Sbjct: 139 YADSDRDLSRLVDAMMAEAGLTIDRDARDLLVSLIGGDRLASRGEIAKLILYAQGQQRVS 198

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+ I+ D   L +++++++ + G+   A+      + +     A+L   L+    L 
Sbjct: 199 LEDVRTIVGDASALALDDVVDSALAGETREALAALAKAMGAATRPDAVLGSLLRALTALH 258

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            + +       S ++++      +   ++  ++++LR  + +   + L  +D  +  AR+
Sbjct: 259 PMTLAV-AGGASPDQVVGSARPPVHFSRKAKMEKALRALDPDRCLKALLAVDDAVLAARR 317

Query: 323 KKYLEKNIIFQTILYIAQTACKNNN 347
              L   I  + +L +AQ A +   
Sbjct: 318 NAPLAPAICERVVLQVAQQAGRGRR 342


>gi|148251787|ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizobium sp. BTAi1]
 gi|146403960|gb|ABQ32466.1| DNA polymerase III, delta subunit [Bradyrhizobium sp. BTAi1]
          Length = 342

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 7/340 (2%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F+ +       +  + + YG D GL+ E  +    +      DPFS+V L+  E+   
Sbjct: 10  DAFLGRPDP----ARPLILLYGPDTGLVRERADTLMASAVDNPDDPFSVVKLDGDELAAE 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            S   +E  +  LF  ++ I +   +  +     +E +    + +  I+I++ +I+ ++ 
Sbjct: 66  PSRLVDEAMTVPLFGGRRAIRVR--AGSRNFASGVETLSQMTVRDCRIVIEAGDIRPDSP 123

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           LRKI EK T+  AI CYPD +  L  LI+E L +    I+ +A+  L+A LGGDR ASRN
Sbjct: 124 LRKICEKATTAAAIGCYPDTERDLARLIDEELRVAALRIAPDARASLMALLGGDRQASRN 183

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL+KL+ +   +  +T  HV  ++ D   + ++ I++    GK           + +   
Sbjct: 184 ELRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVETEFGKAMIAGTY 243

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++    +    L K  +    S      I++     +   ++   + +LR ++   +
Sbjct: 244 PGVIISAAQRHAAWLHKSALAV-ASGTPVSSILEGGFPRLHFSRKPSAETALRNFSPARL 302

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              + ++       RK+  L   I  +T+L IA  A +  
Sbjct: 303 LPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVNARRKG 342


>gi|158422193|ref|YP_001523485.1| DNA polymerase III subunit delta [Azorhizobium caulinodans ORS 571]
 gi|158329082|dbj|BAF86567.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 337

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 156/339 (46%), Gaps = 5/339 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  + +      +       H V + +G D GL+ E      K +     DPF++V L  
Sbjct: 1   MVAVRAGD-ADTALARRDPRHAVVLIFGPDMGLVRERAAGLVKRVVPDVADPFAVVRLEG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+  +     +E  +  LF  ++++ +   +  +  +  LE ++     + ++++++ +
Sbjct: 60  DELSGDPQRLIDETQTVGLFGGERVVWVR--AGSRNFVPALEPVLEVG-GSTLVVVEAGD 116

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK   LR + E     LAI CY D    L  L++  L     +I ++AK++L++ +GGD
Sbjct: 117 LKKGAPLRTLCEASPKALAIPCYADGDRDLGKLVDTMLSEAGLAIDRDAKELLVSLIGGD 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R+ASR E+ KL+ Y      +T + V+ I+ D   L +++++++T+ G+   A       
Sbjct: 177 RLASRGEIAKLALYAQGQGRVTLEDVRVIVGDASALALDDVVDSTLAGQAVEATAALAKA 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +     A+L   L+    L ++ +  +      +++I +    +   ++  L+ +LR 
Sbjct: 237 WGAATRPDAVLGALLRALSSLHQMALQVQA-GTPADRVIDQARPMVHFSRKPKLERALRS 295

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            N       +  +D  +  AR+   + + I  + +L ++
Sbjct: 296 LNAERCLRAILLVDEAVLAARRNAGMAQAITERVVLQLS 334


>gi|146337358|ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizobium sp. ORS278]
 gi|146190164|emb|CAL74156.1| conserved hypothetical protein; putative DNA polymerase III, delta
           subunit [Bradyrhizobium sp. ORS278]
          Length = 342

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 152/346 (43%), Gaps = 4/346 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +   + I         +  + + YG D GL+ E       +      DPFS+V L+ 
Sbjct: 1   MVALRG-RDIDAFLAKPDAARPLILLYGPDAGLVRERAEALIASAVDNPDDPFSVVRLDG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E+    S   +E  +  LF  ++ I +   +  +     +E +   N+ +  I+I++ +
Sbjct: 60  DELAAEPSRLVDEAMTVPLFGGRRAIRVR--AGSRIFASGVETLSQMNVRDCRIVIEAGD 117

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           I+ ++ LRKI EK  + +AI CYPD +  L  LI++ L      ++ +A+  L+A LGGD
Sbjct: 118 IRPDSPLRKICEKAATAVAIGCYPDTERDLARLIDDELRTANLRMAPDARSYLMALLGGD 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R ASRNE++KL+ +   +  +T  HV  ++ D   + ++ I++    GK           
Sbjct: 178 RQASRNEIRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVETEFGKA 237

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + +      ++    +    L K  +    S      I++     +   ++   + +LR 
Sbjct: 238 MIAGTYPGVIISAAQRHAAWLHKSALAV-ASGAPVSSILEGGFPRLHFSRKPSAEVALRN 296

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           ++   +   + ++       RK+  L   I  +T+L IA  A +  
Sbjct: 297 FSPARLLPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVAARRKG 342


>gi|90421810|ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           BisB18]
 gi|90103824|gb|ABD85861.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 342

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 146/342 (42%), Gaps = 7/342 (2%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F+ +          + + YG D GL+ E       +      DPFS V L+  E+ 
Sbjct: 8   EVDSFLARPDSG----RPIILLYGPDAGLVRERAEALIASAVDDPSDPFSTVRLDGDELA 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
              S   +E  +  +F  ++ I +   +  K  +  +E + +  + +  I+I++ ++K +
Sbjct: 64  AEPSRLVDEAMTIPMFGGRRAIRVR--AGSKNFVSGVETLALSALKDCRIVIEAGDLKPD 121

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LRK  E+  + +AI CY D +  L  L+++        I+ + + +L++ LGGDR AS
Sbjct: 122 AALRKACERAKTAVAIGCYTDGERDLAKLVDDEFRNANLRIAPDVRALLVSLLGGDRQAS 181

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           RNE++KL  Y      +T   V  ++ D   L ++ +I+    GK           + + 
Sbjct: 182 RNEVRKLVLYTHGQSEVTLDDVMAVVADASELKLDPVIDGAFAGKPSLVETEFTKAMNAG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                ++    +   L+ K  +  +  + S    ++     +   ++ I++  LR +   
Sbjct: 242 SNPGTIMMAAQRHAALMHKAALAVDAGS-SESSAVEGGFPRLHFSRKAIVEAGLRNFTAQ 300

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            +   + ++ +     RK+  L   I  + +L IA  A +  
Sbjct: 301 RLLAIIDQLGNAALEMRKQSALAPVIAQRALLAIAVNARRRG 342


>gi|86747513|ref|YP_484009.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris HaA2]
 gi|86570541|gb|ABD05098.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris HaA2]
          Length = 342

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 7/340 (2%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           +  F+ +          + + +G D GL+ E  +    +     +DPF+LV L+  E+  
Sbjct: 9   ATSFLARPDPG----RPIILLFGPDAGLVRERADALIASALDDPNDPFALVRLDGDELAA 64

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
             S   +E NS  +F  ++ I I   +  +  +  +E ++        I+I++ +IK +N
Sbjct: 65  EPSRLVDEANSIPMFGGRRAIRIR--AGSRSFVAGVETLVASPPKECRIVIEAGDIKPDN 122

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            LRK  EK  S +AI CYPD +  L  LI++ L   Q  I ++A+ +L+  LGGDR ASR
Sbjct: 123 ALRKACEKAASAVAIGCYPDAEADLAKLIDDELRAAQLQIGRDARGVLMTLLGGDRQASR 182

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE++KL+ Y      IT   V   + D   L ++ I++A   GK           + +  
Sbjct: 183 NEVRKLALYAHGQGEITLDDVIACVSDASDLKLDVIVDAAFSGKPQVVESEFAKAMVAGT 242

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               ++    +    L K  +  +         +      +   ++   + +LR    + 
Sbjct: 243 YPGQIILAAQRHAAFLHKTSLAVDA-GTPAATALDSGFPRLHFSRKAASETALRNLGPSR 301

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           + + + ++       R++  L   I  +T+L IA +A + 
Sbjct: 302 LAQIIDQLATAALDTRRQATLGAAIAQRTLLSIAVSARRR 341


>gi|192288723|ref|YP_001989328.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris TIE-1]
 gi|192282472|gb|ACE98852.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 343

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 8/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            ++  F+ +          + + YG D GL+ E  +           DPF+LV L+  E+
Sbjct: 7   KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  +F  ++ I +   +  +  +  +E +I        I+I++ +IK 
Sbjct: 63  AAEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALITSPPRECRIVIEAGDIKP 120

Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           +N LRK  EK  +  +AI CYPD +  +  LI++ L      I+K+A+ +L   LGGDR 
Sbjct: 121 DNALRKACEKAATGAVAIGCYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQ 180

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           ASRNEL+KL+ Y      +T   V   + D   L ++ I++A   GK           + 
Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMV 240

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +      ++    +    L K  ++ E        ++      +   ++   + +LR  +
Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLVVE-GGTPAAVVLDSGFPRLHFSRKAAAETALRNLS 299

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              + + + ++       R++  L   I  +T+L IA +A + 
Sbjct: 300 TTRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342


>gi|288959463|ref|YP_003449804.1| DNA polymerase III subunit delta [Azospirillum sp. B510]
 gi|288911771|dbj|BAI73260.1| DNA polymerase III subunit delta [Azospirillum sp. B510]
          Length = 341

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 135/340 (39%), Gaps = 8/340 (2%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F++   + +       + YG D GL+ +      K +     DPF +       +  +
Sbjct: 9   DGFLRSPDRKV----RAVLLYGPDSGLVRDRAQTLGKTVVPDLSDPFRVAEFLGRALADD 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN 125
            +   +E  + S    +++I + +   E          +      + ++++++ ++   +
Sbjct: 65  PARLADEAAAISFTGGRRLIRVRDA--EDNCAAAFTAFLESLPPGDSLVVVEAGDLSARS 122

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            LR + E   +  AI CY + +  L  +I + L     +   +    L ANL GDR+ +R
Sbjct: 123 KLRLLFEGDDAAAAIPCYVEEEASLGRVIADILQGHGLTADPDVLGFLAANLVGDRMVAR 182

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E++KL+ Y  +D  +  +  +  I D+  L ++E + A  +G             A   
Sbjct: 183 GEVEKLALYMGKDKRVRLEDAQACIGDSAALSMDEPVWAAAEGDFATLDRSLARLFAEGT 242

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +L G  + FQ L+ + +    +  S E  ++     +    +  L +  R W+ N 
Sbjct: 243 SPVPILRGAQRHFQRLQLLCVQV-AAGKSPEAAVESLRPPVFFKLKTRLVKQARHWSSNH 301

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           VR+ L ++       ++    ++ +  + +  +A    + 
Sbjct: 302 VRQALERLVDAEADCKRTNMPDETLCARVLFQLASLGARR 341


>gi|91974914|ref|YP_567573.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris BisB5]
 gi|91681370|gb|ABE37672.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 342

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 7/338 (2%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68
           F+ +       +  + + YG D GL+ E  +    +     +DPF+LV L+  E+    S
Sbjct: 12  FLARPDA----ARPIILLYGPDSGLVRERADALIASALDDPNDPFALVRLDGDELASEPS 67

Query: 69  TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
              +E  S  +F  ++ I +   +  +  +  +E +         ++I++ +IK +N LR
Sbjct: 68  RLVDEAMSIPMFGGRRAIRVR--AGSRSFVAGVETLAASPPRECRVVIEAGDIKPDNALR 125

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K  EK  S +AI CYPD +  L  LI++ L      I ++A+ +L+  LGGDR ASRNE+
Sbjct: 126 KACEKAPSAVAIGCYPDAEADLARLIDDELRHSNLQIGRDARAVLMTLLGGDRQASRNEV 185

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KL+ Y      IT   V   + D   L ++ I++A   GK           + +     
Sbjct: 186 RKLALYAHGQSEITLDDVMACVSDASDLKLDVIVDAAFSGKPAVVESEFAKAMVAGTYPG 245

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++    +    L K  +  E    +   +       +   ++   + +LR      + +
Sbjct: 246 QIILAAQRHAAFLHKTSLAVEAGAAAATALDSGF-PRLHFSRKAASETALRNLGAPRLAQ 304

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            + ++       R++  L   I  +T+L IA +A + N
Sbjct: 305 IIDQLATAALETRRQATLGAAIAQRTLLSIAVSARRRN 342


>gi|85714100|ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
 gi|85699226|gb|EAQ37094.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
          Length = 342

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 153/340 (45%), Gaps = 7/340 (2%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F+ +       +  + + YG D GLI E  N    +     +DPFSLV L+  ++   
Sbjct: 10  DSFLARPDP----ARPIILLYGPDAGLIRERANALMSSAVDDPNDPFSLVRLDGDDLSAE 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            S   +E  +  LF  ++ I I+  +  +     ++ +    I +  I+I++ E+K  + 
Sbjct: 66  PSRLVDEAMTVPLFGGRRAIRIK--AGSRSFASGVDALADSTIQDCRIVIEAGELKPESP 123

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           LRK  E+  + +AI+CYPD +  L  LI+E     +   + +A+  L++ LGGDR ASRN
Sbjct: 124 LRKACERAKNAVAIACYPDTERDLARLIDEEFRASKLKTAPDARAALISLLGGDRQASRN 183

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL+K++ Y      IT   V  ++ D     ++ +I+A   G+           + + + 
Sbjct: 184 ELRKIALYTHGQGEITLVDVMAVVSDASDFKLDPVIDAAFAGQPAVVEAEFAKAMIAGIY 243

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++    ++   L K  ++ E S  S     +     +   ++  ++ +L  ++ + +
Sbjct: 244 PGLVISAAQRQVAALHKAALLME-SGASPSSAAESGFPRLHFSRKAAVETALNNFSASRL 302

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            + + ++       RK+  L   I  + ++ IA  A +  
Sbjct: 303 IQVMDQLAGAALETRKRATLASAIAQRALMSIAVNARRRG 342


>gi|39933366|ref|NP_945642.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           CGA009]
 gi|39652991|emb|CAE25733.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 343

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 8/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            ++  F+ +          + + YG D GL+ E  +           DPF+LV L+  E+
Sbjct: 7   KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  +F  ++ I +   +  +  +  +E +I        I+I++ +IK 
Sbjct: 63  SAEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALIASPPRECRIVIEAGDIKP 120

Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           +N LRK  EK  +  +AI CYPD +  +  LI++ L      I+K+A+ +L   LGGDR 
Sbjct: 121 DNALRKACEKAATGAVAIGCYPDAEADIARLIDDELRGSNLQIAKDARAVLTTLLGGDRQ 180

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           ASRNEL+KL+ Y      +T   V   + D   L ++ I++A   GK           + 
Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMV 240

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +      ++    +    L K  ++ E        ++      +   ++   + +LR  +
Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLVVE-GGTPAAVVLDSGFPRLHFSRKAAAETALRNLS 299

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              + + + ++       R++  L   I  +T+L IA +A + 
Sbjct: 300 TTRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342


>gi|75674292|ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter winogradskyi Nb-255]
 gi|74419162|gb|ABA03361.1| DNA polymerase III, delta subunit [Nitrobacter winogradskyi Nb-255]
          Length = 342

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 150/340 (44%), Gaps = 7/340 (2%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F+ +       +  + + YG D GL+ E  N    +     +DPFSLV L+  ++   
Sbjct: 10  DGFLARPDP----ARPIILLYGPDAGLVRERANALISSAVEDPNDPFSLVRLDGDDLAAE 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            S   +E  +  L   ++ I I+  +  +     ++ +    I +  I+I++ E++  + 
Sbjct: 66  PSRLVDEAMTVPLLGGRRAIRIK--AGSRSFASGVDTLANSTIQDCRIVIEAGELRPESP 123

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           LRK  E+  + +AI+CYPD +  L  LI+E L      I+ +A+  L++ LGGDR ASRN
Sbjct: 124 LRKACERAKNAVAIACYPDTERDLARLIDEELRASDLKIAPDARAALMSLLGGDRQASRN 183

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL+K++ Y      IT   V  ++ D     ++ +I+A   G+           + +   
Sbjct: 184 ELRKIALYAHGQGEITLLDVMAVVSDASDFKLDPVIDAAFAGRPAAVEAEFAKAMVAGTY 243

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++    +    L K  ++ E    S     ++    +   ++  ++ +L  ++   +
Sbjct: 244 PGLVISAAQRFVAALHKAALLME-EGASASSATERGFPRLHFSRKASVETALSHFSAPRL 302

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            + + ++       RK+  L   I  + ++ IA  A +  
Sbjct: 303 VQVMDQLARAALETRKQAALASAITQRALMSIAVNARRRG 342


>gi|115522416|ref|YP_779327.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
           BisA53]
 gi|115516363|gb|ABJ04347.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 149/343 (43%), Gaps = 7/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            E   F+ +       +  + + +G+D GL+ E      K+     HDPF+LV L+  +I
Sbjct: 7   KEIDAFLARPDS----ARPIILLFGADSGLVRERAEALIKSAVDDPHDPFALVRLDGDDI 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  +F  ++ I +   +  K  +  +E +    + +  ++I++ ++K 
Sbjct: 63  AAEPSRLVDEALTIPMFGGRRAIRVR--AGSKSFVSSVEALSESALKDCRVVIEAGDLKA 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           +  LRK  E+  + + I CY D+   +  LI+E L I    ++ +A+ IL A LGGDR +
Sbjct: 121 DAALRKTCERAKNAVTIPCYLDDARAIGSLIDEELRIANLRLAPDARAILAALLGGDRQS 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SRNEL+KL+ Y      IT   V   + D   L ++ +++    G            + +
Sbjct: 181 SRNELRKLTLYAHGQSEITLDDVIACVSDASDLKLDPVVDYAFAGNPAQVETEFAKAMNA 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 +L    +   LL K  ++ +    +           +   ++  ++ +LR W  
Sbjct: 241 GTYPGLILSAAQRHAALLHKAALLVDQGTPASSAAESGF-PRLHFSRKTQVEAALRAWTA 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
             + + + ++      +RK+  L   I  + +L IA  A +  
Sbjct: 300 PKLVQVIDQLATATLDSRKQAGLAAAIAQRALLSIAVNARRRG 342


>gi|316931730|ref|YP_004106712.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris DX-1]
 gi|315599444|gb|ADU41979.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris DX-1]
          Length = 343

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 8/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            ++  F+ +          + + YG D GL+ E  +           DPF+LV L+  E+
Sbjct: 7   KDATSFLARPDPG----RPIVLLYGPDAGLVRERADALIAASLDDAKDPFALVRLDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  +F  ++ I +   +  +  +  +E +I        ++I++ +IK 
Sbjct: 63  ASEPSRLVDEALAIPMFGGRRAIRVR--AGSRSFVAGVEALIASPPKECRVVIEAGDIKP 120

Query: 124 NNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           +N LRK+ EK T+  +AI CYPD +  +  LI++ L      I K+AK +L   LGGDR 
Sbjct: 121 DNALRKVCEKATTGAVAIGCYPDAEADIARLIDDELRGSSLQIGKDAKAVLTTLLGGDRQ 180

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           ASRNEL+KL+ Y      +T   V   + D   L ++ I++A   GK           + 
Sbjct: 181 ASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVIVETEFAKAMV 240

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +      ++    +    L K  +  E        ++      +   ++   + +LR  +
Sbjct: 241 AGTYPGQIILAAQRHAAFLHKTSLAVE-GGTPAAMVLDSGFPRLHFSRKAAAETALRNLS 299

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              + + + ++       R++  L   I  +T+L IA +A + 
Sbjct: 300 ATRLAQIIEQLASAALETRRQATLGAAIAQRTLLSIAVSARRR 342


>gi|27375740|ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA
           110]
 gi|27348878|dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110]
          Length = 342

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 7/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            E   F+ +          + + YG D GL+ E  +    +     +DPFSLV L+  E+
Sbjct: 7   KEIDAFLARPDAG----RPIVLLYGPDAGLVRERADALIASAVDDPNDPFSLVRLDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  LF  ++ I +   +  +     ++ +    + +  I+I++ E++ 
Sbjct: 63  SAEPSRLVDEAMTVPLFGGQRAIRVR--AGSRSFASGIDTLAEMGVKDCRIVIEAGELRP 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
            + LRK  E+  + +AI CYPD +  L  L+++ L I    I+++A+  L++ LGGDR A
Sbjct: 121 ESPLRKACERAKTAVAIGCYPDTERDLAKLMDDELRIANLRIAQDARAALMSFLGGDRQA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SRNEL+KL+ Y      IT + V  ++ D   L ++ I++    G+           + +
Sbjct: 181 SRNELRKLTLYAHGKGEITLEDVMAVVADASELKLDPIVDGAFAGRPDIVETEFAKAMIA 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++    ++   L K  +           ++      +   ++  ++ +LR ++ 
Sbjct: 241 GTYPGVIISAAQRQAAWLHKSALAI-ADGQPASAVLDGGFPRLHFSRKPAVETALRNFSV 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
             +   + ++       RK+  L   I  +T++ IA  A +  
Sbjct: 300 ARLAAIIEQLATAALDTRKQSTLAAAIAQRTLMAIAANAKRRG 342


>gi|144900373|emb|CAM77237.1| DNA polymerase III, delta subunit [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 341

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 143/341 (41%), Gaps = 7/341 (2%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           ++  FI+        +    + +G D GL+ E   +  K +    +DPF +  L A  ++
Sbjct: 7   KAEAFIRAPDP----AMRAILVFGPDNGLVRERAVKLAKTVLPDLNDPFRVAELTAAALK 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  + +L   ++++++ +      +    +  +     + ++++++ E+   
Sbjct: 63  DDPARLADEAAAMALTGGRRVVMVRDAGD--TLSSLFQSFLDNPTGDAMVVVEAGELGPR 120

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           ++LRK+ E   + +A++ Y D    L  +I E L +   S   +A   L+ +LGGDR  +
Sbjct: 121 SSLRKLFEGAANAVALASYADEGASLQQVIAEELKVSGLSAEADAMSFLMDHLGGDRRLT 180

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R+ELQKL+ Y      I+ +     I DT  L ++++  AT  G    A  + D      
Sbjct: 181 RSELQKLALYMGGPGRISLEDAIACIGDTAALSMDDLSLATADGDHGTAQRVLDRLTREG 240

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
               A+L    + FQ L            S ++ +   +  +I    +  +  L  W+  
Sbjct: 241 TSPVAVLRALSRHFQRLHLAAGTM-AMGKSADQAMNALKPPVIFKAADRFRRQLSRWSAE 299

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              + L ++       +        I  + I+ + + A ++
Sbjct: 300 RAGQALERLIEAEMDCKSTGMPATEICSRVIMTLCRAAGRS 340


>gi|23016031|ref|ZP_00055792.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 340

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 137/336 (40%), Gaps = 3/336 (0%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           I+   K    +    + +G D GL+ E + +  +++     DPF +  L    ++   S 
Sbjct: 8   IEAFLKAPDPAMRAVLVFGPDLGLVRERVQRLIRSVVPDTSDPFRVAELTPAALKDIPSR 67

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             +E  + +L   ++++++ +    +     +   + + + + +++I+  E+   ++LRK
Sbjct: 68  LADEAAAMALGGGRRVVVLRDAGDGQSG--AVSSFLARPMGDALVVIEGGELGPRSSLRK 125

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + E   +  A++CY D    L  +I+E L         +A   L  +LGGDR  +R EL 
Sbjct: 126 LFEGADNAAALACYGDEGGSLAGVIQEELKSAGLMAEPDAMAYLTEHLGGDRRLTRAELG 185

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+ Y      +  +     + DT  L ++++  +T  G    A  + D  L        
Sbjct: 186 KLALYMGGPGRVHLEDAVACVGDTAALGLDDLALSTADGDHAGAQRVLDRLLREGSQPVG 245

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    + FQ L     +      S ++ +   +  +I    +  +  L  W  + + + 
Sbjct: 246 MLRSVARHFQRLHLAAGLM-AQGKSTDQAMAALKPPVIFKAADRFKRQLSRWPADRLGKA 304

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           L  +       +        I  + ++ IA+ A + 
Sbjct: 305 LDLLTEAEVDCKTTGMPAAEIASRALMMIARAAARR 340


>gi|83309128|ref|YP_419392.1| DNA polymerase III subunit delta [Magnetospirillum magneticum
           AMB-1]
 gi|82943969|dbj|BAE48833.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 340

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 138/341 (40%), Gaps = 7/341 (2%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
               F++    ++       + +G D GL+ E + +  +++     DPF +  L    ++
Sbjct: 7   RVEAFLKSPDPSI----RAVLVFGPDLGLVRERVQRLIRSVVPDASDPFRVAELTPAALK 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           +  S   +E  + +L   ++ +++ +    +     +   + + + + +++I+  E+   
Sbjct: 63  EVPSRLADEAAAMALGGGRRAVVLRDAGDGQSG--AVSSFLARPMGDALVVIEGGELGPR 120

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           ++LRK+ E   +  A++CY D    L  +I+E L         +A   L  +LGGDR  +
Sbjct: 121 SSLRKLFEGADNGAALACYGDEGGSLAGVIQEELKAAGLMAEPDAMAYLTEHLGGDRRLT 180

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           R EL KL+ Y      ++       + DT  L ++++  AT  G    A  + D  L   
Sbjct: 181 RAELGKLALYMGGPGRVSLDDAVACVGDTAALGLDDLALATADGDHAGAQRVLDRLLREG 240

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                +L    + FQ L     +      S ++ +   +  +I    +  +  L  W  +
Sbjct: 241 GQPVGMLRSVARHFQRLHLAAGLM-AQGKSTDQAMSALKPPVIFKAADRFKRQLSRWPAD 299

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            + + L  +       +        I  + ++ IA+ A + 
Sbjct: 300 RLGKALDLLTEAEVDCKTTGMPAAEIASRALMMIARAAARR 340


>gi|209883519|ref|YP_002287376.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5]
 gi|209871715|gb|ACI91511.1| DNA polymerase III, delta subunit [Oligotropha carboxidovorans OM5]
          Length = 342

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 147/343 (42%), Gaps = 7/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            E   F+ +       +  V + YG D GL+ E  +    +     +DPFS+V ++  E+
Sbjct: 7   KEIDTFLARPDP----ARPVILLYGPDTGLVRERADALLSSAVADPNDPFSMVKMDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             + +   +E  +  LF  ++ I I   +  +     ++ +      + +I+I++ E++ 
Sbjct: 63  AGDPARLVDEAMTVPLFGGRRAIRIR--AGSRNFASAIDTLAGMAPKDCMIVIEAGELRP 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           +  LRK  E+  S +AI+CY D +  L  LI+E L     +I+ +A+  L   LGGDR A
Sbjct: 121 DAPLRKACERSRSAVAIACYTDTERDLARLIDEELRANGTTIAADARAALTGLLGGDRQA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SRNE++KL+ Y      +T   V  ++ D   L ++ II+    G+           LA+
Sbjct: 181 SRNEIRKLALYTHGAKEVTLADVAAVVTDASALALDPIIDGAFAGRAAAVETAYAKALAA 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++    +    L K  +  E    S    ++     +   +R  ++ +LR  + 
Sbjct: 241 GTYPGQIIASAQRHAAQLHKARLALE-EGRSEMDALESGFPRLHFSRRTHVETALRGLSS 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
             +   +  +       R++  L   I  + ++ IA  A    
Sbjct: 300 ERLLRIISLLAEAAFDMRRQADLAGTIGGRALMSIAVNARARR 342


>gi|299133189|ref|ZP_07026384.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2]
 gi|298593326|gb|EFI53526.1| DNA polymerase III, delta subunit [Afipia sp. 1NLS2]
          Length = 342

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 148/342 (43%), Gaps = 7/342 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            E   F+ +       +  V + YG D GL+ E  +    +     +DPFS+V ++  E+
Sbjct: 7   KEIDSFLARPDP----ARPVILLYGPDAGLVRERADALLASAVDDPNDPFSMVKMDGDEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             + S   +E  +  LF  ++ I I   +  +     ++ +   +  +  I+I++ E++ 
Sbjct: 63  AADPSRLVDEAMTVPLFGGRRAIRIR--AGSRNFASGIDTLADMSPKDCRIVIEAGELRP 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           +  LRK  E+  + +AI+CY D +  L  LI+E L     +IS +A+  L+  LGGDR A
Sbjct: 121 DAPLRKACERSRTAVAIACYADTERDLARLIDEELRPIGATISSDARAALVGLLGGDRQA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SRNE++KL+ Y      +T   V  ++ D   L ++ II+    GK           +A+
Sbjct: 181 SRNEIRKLALYAHGAKEVTLADVAAVVTDASALALDPIIDGAFAGKAAVMEAAYTKAIAA 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++    +    L K  +  E    S    +      +   +R  ++ +LR  + 
Sbjct: 241 GTYPGQIIASAQRHAAQLHKARLALE-DGRSESDALDGGFPRLHFSRRTPVEAALRNLSS 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
             +   +  +       R++  L   I  + ++ IA  A + 
Sbjct: 300 ERLLRIITLLADAALEMRRQADLAATIGQRALMAIAVNARQR 341


>gi|92115732|ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14]
 gi|91798626|gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14]
          Length = 342

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 149/343 (43%), Gaps = 7/343 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
            +   F+ +          + + YG D GL+ E  +    +      DPFSLV L+  ++
Sbjct: 7   KDVDSFLARPDPG----RPIILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGDDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
               S   +E  +  LF  ++ I ++  +  +     +E +    I +  I+I++ E++ 
Sbjct: 63  ATEPSRLVDEAMTVPLFGGRRAIRVK--AGTRNFAGGIETLADSAIQDCRIVIEAGELRP 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              LRK  E+  + +AI+CYPD +  L  LI++ L +    I+ +A+  L++ LGGDR A
Sbjct: 121 EAPLRKACERAKNAVAIACYPDTERDLARLIDDELRLSNLKIAPDARATLMSLLGGDRQA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           SRNEL+K++ Y      I    V  ++ D     ++ I++A   G+           + +
Sbjct: 181 SRNELRKIALYAHGQREIALDDVMAVVSDASDFKLDPIVDAAFAGQPAVVETEFAKAMVA 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++    ++   L K  +  E    +           +   ++  ++ +LR ++ 
Sbjct: 241 GTYPGLVILAAQRQVAALHKAALAMEGGASASSAAESGF-PRLHFSRKTAVETALRNFSA 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
             + + + ++      ARK+  L   I  + ++ IA  A +  
Sbjct: 300 ARLLQVMDQLAVAALEARKQTVLAPVIAQRALMSIAVNARRRG 342


>gi|209965831|ref|YP_002298746.1| DNA polymerase III subunit delta [Rhodospirillum centenum SW]
 gi|209959297|gb|ACI99933.1| DNA polymerase III, delta subunit, putative [Rhodospirillum
           centenum SW]
          Length = 345

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 144/346 (41%), Gaps = 9/346 (2%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
                F+++    +       +FYG D GL+ E   Q  + +     DPF +  L + +I
Sbjct: 6   KNVEGFLKRPLPQV----RAVLFYGPDSGLVRERAAQLCRTVVEDLSDPFRVAELKSDQI 61

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             + +   +E+ + +L   ++++ + +                    + ++++++ ++ K
Sbjct: 62  AADPARLHDEMAAIALTGGRRLVRLRDAEDALAAALGRLLK-DLPAGDSLLVVEAGDLGK 120

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
            + LR +AE+  S  AI+CY + +  L   +   L     +I  +A+  L  NL GDR+ 
Sbjct: 121 ASKLRALAEEADSAAAIACYVEGEEELAGTVARILGEHGLAIDPDARAWLAGNLVGDRVM 180

Query: 184 SRNELQKLSSY---CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           +RNE+ KL+ Y     +   +T + V+ ++ D+  L +EE   A   G +          
Sbjct: 181 ARNEIDKLALYMASAPKGAKVTLEDVRAVVGDSAALELEEPALAAADGDMAAVDRSLRRL 240

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A    S ALL    + FQ L  I +       + ++ ++     +       L   +R 
Sbjct: 241 FAEGTASVALLRTAQRHFQRLH-IAVAHVARGQTPQQAVKSLRPPVFFKMEAQLTSQVRR 299

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           W   L+++ L ++       ++    ++ I  +    +AQ A +  
Sbjct: 300 WTLPLLQQALTRLLEAEADCKRTNMPDETICARAFFQLAQLARRGG 345


>gi|220921034|ref|YP_002496335.1| DNA polymerase III subunit delta [Methylobacterium nodulans ORS
           2060]
 gi|219945640|gb|ACL56032.1| DNA polymerase III, delta subunit [Methylobacterium nodulans ORS
           2060]
          Length = 342

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 145/332 (43%), Gaps = 6/332 (1%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           +       V + YG D GL+ E   +  ++      DPF+LV L+   +  +     +E 
Sbjct: 15  RGPDPRIAVILVYGPDTGLVAERARRLAESAVADPSDPFALVKLDGDTLAGDPGRLVDEA 74

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            +  LF  ++ I +      +     +E ++   +    I++++ ++ K+  LR + E+ 
Sbjct: 75  GTVGLFGGQRAIWVR--PGSRNYAPAVEAVLKAELAATRIVVEAGDLAKSAPLRALCERS 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              LA+ CYPD+   L +LI+  L      I+++A+++ +A+LGGDR AS  E++KL+ Y
Sbjct: 133 QRALALPCYPDDARTLAELIDSRLQDEGLRIARDAREVFVASLGGDRRASLGEIEKLALY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V+ I  D     +  +I+A   G+          F    M +  +L   
Sbjct: 193 ARGRGEITLEDVEAIASDVSGSALNALIDAAFAGQAGETERSYRRFQTEGMDASVMLGAG 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           L+    L  + +  E    S  +++      +   ++ I++  L  W+ + +R  + ++ 
Sbjct: 253 LRHVLTLLTVRL--EGDGKSPSQLVANWR-GLHFRRQKIVEIQLARWSPDGLRRAVTRLQ 309

Query: 315 HRIHLARK-KKYLEKNIIFQTILYIAQTACKN 345
             +   R+       +I     L +A  A + 
Sbjct: 310 EAVLACRRADADFAHSIASDVFLRLALEASRR 341


>gi|23011672|ref|ZP_00051963.1| COG1466: DNA polymerase III, delta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 343

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 145/348 (41%), Gaps = 6/348 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ ++ 
Sbjct: 1   MTAVKAGDIESLIRRGPDARIAVVLVYGPDTGLVADRATRLVRGMVSDPDDPFALIRIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DALASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CYPD++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LGRSAPLRTLCEGSARALALPCYPDDERTLADLIERTLQDDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +  + V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGTVGVEDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +++      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLALRL--DNPRGSASQLVANWR-GLHFRRKALAETQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNNN 347
           W+   +++ +  +   +   R+ +  L         L IA  A +  N
Sbjct: 296 WSAPALQQAVTWLQETVLACRRSEPDLAHAQALGVFLRIAVEASRRRN 343


>gi|188580906|ref|YP_001924351.1| DNA polymerase III subunit delta [Methylobacterium populi BJ001]
 gi|179344404|gb|ACB79816.1| DNA polymerase III, delta subunit [Methylobacterium populi BJ001]
          Length = 343

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 144/347 (41%), Gaps = 6/347 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ ++ 
Sbjct: 1   MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDTGLVADRAARLVRGMVADPDDPFALIKIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CYPD++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LARSAPLRTLCEGSAKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +  + V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGSVGVEDVEAIVSDVGASVLNALIDAAFAGRAGEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +++      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQLVANWR-GLHFRRKALAETQLSR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
           W+   +++ +  +   +   R+ +  L         L IA  A +  
Sbjct: 296 WSGPGLQQVVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEASRRR 342


>gi|254560707|ref|YP_003067802.1| DNA polymerase III subunit delta, holA [Methylobacterium extorquens
           DM4]
 gi|254267985|emb|CAX23853.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens DM4]
          Length = 343

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 6/347 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ ++ 
Sbjct: 1   MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CYPD++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +    V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +I+      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQIVANWR-GLHFRRKALAETQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
           W+   +++ +  +   +   R+ +  L         L IA  A +  
Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342


>gi|240138145|ref|YP_002962617.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens AM1]
 gi|240008114|gb|ACS39340.1| putative DNA polymerase III, delta subunit, holA [Methylobacterium
           extorquens AM1]
          Length = 343

 Score =  286 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 6/347 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ ++ 
Sbjct: 1   MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CYPD++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +    V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +I+      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSANQIVANWR-GLHFRRKALAETQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
           W+   +++ +  +   +   R+ +  L         L IA  A +  
Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342


>gi|163851014|ref|YP_001639057.1| DNA polymerase III subunit delta [Methylobacterium extorquens PA1]
 gi|163662619|gb|ABY29986.1| DNA polymerase III, delta subunit [Methylobacterium extorquens PA1]
          Length = 343

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 142/347 (40%), Gaps = 6/347 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ +  
Sbjct: 1   MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIEG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CYPD++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LARSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +    V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +I+      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQIVANWR-GLHFRRKALAETQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
           W+   +++ +  +   +   R+ +  L         L IA  A +  
Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRR 342


>gi|298293751|ref|YP_003695690.1| DNA polymerase III subunit delta [Starkeya novella DSM 506]
 gi|296930262|gb|ADH91071.1| DNA polymerase III, delta subunit [Starkeya novella DSM 506]
          Length = 340

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 156/336 (46%), Gaps = 4/336 (1%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           ++ +   +     V + +G D GL+ E    +    +    DPF LV L+  EI  +   
Sbjct: 9   VEATLTRIDPLRPVLLLFGPDSGLVRERARAYLARAAEGSSDPFGLVRLDGDEIAGDPGR 68

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             +E  + +LF  +++I +      + V+  +E ++     + I++I++ ++K+   LR 
Sbjct: 69  LVDEAGTVALFGGRRVISLR--VGSRNVVPAVEALLAAPPGDAIVVIEAGDLKRGQGLRA 126

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + E     LAI+CY D    L  LI+  +     SI ++A+  L+  LGGDR+ASR E+ 
Sbjct: 127 LCEASPRALAITCYADTDRDLTRLIDTMVTEAGLSIDRDARAELMGLLGGDRLASRGEIA 186

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y   +  IT +HV+ I+ D   L ++EI ++   G+               M +  
Sbjct: 187 KLLLYAAGEPRITAEHVRAIVGDASSLALDEIADSAFAGQPTEMASAFAKASGEGMRADI 246

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    +  Q L  + +  +  +I  E+ I+     I   ++ +++++LR W+   +   
Sbjct: 247 ILGSVCRTGQALHLLRLAADAGSI--ERAIESARPAIHFRRKPLIEKALRSWSAARLEAA 304

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           L  +D  +  AR+   L   I  + +L +A  A + 
Sbjct: 305 LLALDDALLAARRNAALGPAIAERALLQVAGQARRG 340


>gi|218529841|ref|YP_002420657.1| DNA polymerase III subunit delta [Methylobacterium chloromethanicum
           CM4]
 gi|218522144|gb|ACK82729.1| DNA polymerase III, delta subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 343

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 141/347 (40%), Gaps = 6/347 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++        +       V + YG D GL+ +   +  + +     DPF+L+ ++ 
Sbjct: 1   MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF   + I +   S  +     ++ ++        I++++ +
Sbjct: 61  DTLASDPGRLVDEAGTVGLFGGSRTIWVR--SGSRNYAPAVDAVLKAPTEGARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + ++  LR + E     LA+ CY D++  L DLIE +L      I ++A+ +L  +LG D
Sbjct: 119 LARSAPLRTLCEGSPKALALPCYTDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS +E+ KL+ Y      +    V+ I+ D     +  +I+A   G+   A      F
Sbjct: 179 RRASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M   A+L   L+    L  + +  +    S  +++      +   ++ + +  L  
Sbjct: 239 RHEGMDPSAMLGAGLRHALTLLSLRL--DNPRGSASQLVANWR-GLHFRRKALAETQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
           W+   +++ +  +   +   R+ +  L         L IA    +  
Sbjct: 296 WSAPGLQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIETARRR 342


>gi|182677221|ref|YP_001831367.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633104|gb|ACB93878.1| DNA polymerase III, delta subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 340

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 161/346 (46%), Gaps = 14/346 (4%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  I+SH+   F+ + T ++FL    ++ +G+D GL+ E +            DPF  + 
Sbjct: 1   MVAIKSHEADRFLARPTTHVFL----YLVHGTDNGLVAERVKTIVARSVDDPKDPFQFLR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  ++  +     +E ++  LF  ++ ILI   +  K  +  +E I+     +  II++
Sbjct: 57  LDGDDLAADPQRLADEAHTVPLFGGRRAILI--GARGKAFIQAVEPILAVPPQDCTIIVE 114

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +  +KK+N LRK+ E+  +  AI CYPD++  L  LIE      +++I  +AK+ LL+ L
Sbjct: 115 AGALKKDNALRKLCERDKNAAAIECYPDSQRDLQALIEAETAATRQTIRADAKEELLSLL 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G DR+ +R EL KL  Y   +  IT  HV+ I+ D   L+++  INA   G+  NA  +A
Sbjct: 175 GADRLTTRGELDKLLLYTHGEAEITLSHVEAIVADASSLFVDGAINAAFAGEATNADRIA 234

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                    ++ LL   L++   L +  + K+                    +    ++ 
Sbjct: 235 RRVFEEAGDANMLLGMALRQALSLHRAKLDKDMGLAPRGGAPFAAS-----WRMGNAEQH 289

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           L  W+   + E    +   +  AR++  L + I  + +  +A  A 
Sbjct: 290 LSRWSVERLSEASTLLGEAVRQARREPKLAEAIALRALWSVAFLAR 335


>gi|217976533|ref|YP_002360680.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2]
 gi|217501909|gb|ACK49318.1| DNA polymerase III, delta subunit [Methylocella silvestris BL2]
          Length = 338

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 145/344 (42%), Gaps = 14/344 (4%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
           + E+ KF+++   ++F    V++ YG D GL+ E      K       DPF L+ +   +
Sbjct: 6   SFEADKFLERPAPHIF----VYLLYGPDAGLVAERARALVKKSVDNPKDPFQLLRIGGDD 61

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           +  +     +E N+  LF  ++ I IE  +  +  +  LE +         III++  +K
Sbjct: 62  LAADPLRLADEANTIGLFGDRRAIWIE--AQGRAFVTALEPLFAAPPQGSTIIIEAGALK 119

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K+  LR++ E+  S  AI+C PD++  +  LIE        S+S EAK +L + LG DR+
Sbjct: 120 KDAVLRRLCEREKSAAAIACMPDSQEEIAHLIEREAAGAGLSVSPEAKTLLASLLGQDRL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A+R EL+KL  Y      I  +HV+ I+ D   L ++  ++    G        A    A
Sbjct: 180 ATRGELEKLVLYAHGAGAIGLEHVEAIVSDASSLLLDHAVDGAFGGDFAAVEAGARRLAA 239

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                + LL   L+    L +  +  +                    +     + +R+W 
Sbjct: 240 QGADVNQLLGAALRYSLGLRRARLEIDAGGGHGHGYGFG--------RSRAFDQHVRLWT 291

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              +   +  +   +   R++  L + I  + +  +A  A    
Sbjct: 292 AERLARAIDILAEAVRRTRREPKLAQPIALRALWSVASAAQARG 335


>gi|114326671|ref|YP_743828.1| DNA polymerase III subunit delta [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314845|gb|ABI60905.1| DNA polymerase III, delta subunit [Granulibacter bethesdensis
           CGDNIH1]
          Length = 351

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 147/336 (43%), Gaps = 11/336 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
             ++  F+++  + +       + YG D GL+ E      + ++    DPF ++ L A +
Sbjct: 5   ARQAEAFLRQPDQAV----RAVLLYGDDHGLVRERGTSLTRLVAGQIDDPFRVIELAAEQ 60

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
                    NE+   SL   +++I I   +    +     +  ++     ++I+++  + 
Sbjct: 61  AAD----LPNEMAGLSLTGGRRVIRIREAAD---IFAAPLQAGLERQGEALVILEAGTLT 113

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             + LR +AEK  S  +I+CYPD    L   I++SL   + SI  +A + L  +LG DR 
Sbjct: 114 PRSKLRVLAEKMASAASIACYPDEGRSLSQTIQDSLARDRVSIEADALKWLCDHLGADRA 173

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            +R E+ KL+ Y  +D   T +     I D   L +E+ + A++ G I  A       L+
Sbjct: 174 LTRREIDKLALYVGQDGTATIEAAHACIGDLAGLSLEDALYASVIGDISGAERALSLALS 233

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
               S A++   LQ  Q L K+  + + +  S  + +++ +  +   +     ++L +W 
Sbjct: 234 EGTTSIAVVRMALQHMQRLRKLRAVMQENGTSAAEAVRQAKPPVFFKRVPAFTKALTLWR 293

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             ++      +       ++    ++ I  Q ++ I
Sbjct: 294 DEMLAAICDMLWQAEKACKQSGAPDETICRQAVMSI 329


>gi|170750489|ref|YP_001756749.1| DNA polymerase III subunit delta [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657011|gb|ACB26066.1| DNA polymerase III, delta subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 345

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 139/324 (42%), Gaps = 7/324 (2%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ +      +       V + +G D GL+ E   +  ++      DPF+LV ++ 
Sbjct: 1   MTAVKAGEIEGLIRRGPDPRIPVILVFGPDTGLVTERARKLAEDFVDDPADPFALVRIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF  ++ I +      +     +E ++   + +  I++++ +
Sbjct: 61  DALAADPGRLCDEAGTMGLFGGRRSIWVR--PGTRNYAPAVEAVLGATVADARIVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + KNN LR + E+    LAI CY D++  L DLIE +L      I + A+++L  +LGGD
Sbjct: 119 LAKNNPLRALCERSPKALAIPCYADDERTLSDLIERTLQERGLRIDRAAREVLARSLGGD 178

Query: 181 RIASRNELQKLSSYCLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           R AS  E++KL+ Y   +    +T +HV+ +  D     +  +I+A   G+         
Sbjct: 179 RRASLMEIEKLALYAAGEGDKTVTLEHVEAVTSDVAASVLNTLIDAAFDGRREAVERDYR 238

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            F    +    +L   L+    L    +       +    +  T + +   ++  ++  L
Sbjct: 239 RFRHEGLDPGVVLGSALRHALTLLTTRLDNPEKTPAM---MAATWRGLHFKRKASIEGQL 295

Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322
             W    +R+ +  +   +   R+
Sbjct: 296 GAWPPGTLRQAVAALQEAVLACRR 319


>gi|170739701|ref|YP_001768356.1| DNA polymerase III subunit delta [Methylobacterium sp. 4-46]
 gi|168193975|gb|ACA15922.1| DNA polymerase III, delta subunit [Methylobacterium sp. 4-46]
          Length = 342

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 145/346 (41%), Gaps = 6/346 (1%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I          +       V + YG D GL+ E      +       DPF+LV ++ 
Sbjct: 1   MTAIRPGDVEGLLRRGPDPRVAVILVYGPDTGLVAERARSLAEGAVADPSDPFALVKIDG 60

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +     +E  +  LF  ++ I +      + +   +E ++   +    +++++ +
Sbjct: 61  DVLAGDPGRLLDEAGTVGLFGGQRAIWVR--PGSRPIAPAVEALLKAELPAARVVVEAGD 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + K+  LR + E+    LA+ CYPD+   L DLI+  L      I+++A++ L A+LGGD
Sbjct: 119 LAKSAPLRVLCERSPRALALPCYPDDARTLADLIDARLQAEGLRIARDARETLAASLGGD 178

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R AS  E++KL+ Y      I+ + V+ +  D     +  +I+A   G+   A      F
Sbjct: 179 RRASLGEIEKLALYARGQREISLEDVEAVASDVSGSVLNALIDAAFAGQAGEAERSYRRF 238

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
               M +  +L   L+    L  +    +    S  +I+      +   ++ I++  L  
Sbjct: 239 RVEGMDASVMLGAALRH--ALALLAARLDGQGQSPGQIVASWR-GLHFRRQRIVEVQLAR 295

Query: 301 WNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKN 345
           W+   +R  + ++   +   R+ +      +    ++ IA  A + 
Sbjct: 296 WSPEALRRAVARLQEAVLACRRAEAEFAHALASDVLVRIALEAGRR 341


>gi|258543601|ref|YP_003189034.1| DNA polymerase III subunit delta [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634679|dbj|BAI00655.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637735|dbj|BAI03704.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640789|dbj|BAI06751.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643844|dbj|BAI09799.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646899|dbj|BAI12847.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649952|dbj|BAI15893.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652942|dbj|BAI18876.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655996|dbj|BAI21923.1| DNA polymerase III delta subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 337

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 134/328 (40%), Gaps = 8/328 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + +G D GLI E        I+ +  DPF + VL+    ++       E  + SL
Sbjct: 17  AWRILLLHGEDTGLIKERAQNAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSL 72

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++ + + S    +L  LE  + +N  + ++I+++  +   + LR   EK  +  +
Sbjct: 73  MGGRRVVRVRDASD--ALLKPLEAFLAQN-SDTLVILEAPGLSSRSKLRGFLEKHPNCAS 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I CYP+   +L   I   L      I  +A   L + LG DR A+R+E++KL  Y  +  
Sbjct: 130 IGCYPEEGRNLESSITRMLAEHNVRIDSDALHWLTSRLGADRAAARSEIEKLCLYAGDTG 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V+  I D   + +E+   A  +G    A    +  LA      A+   FL    
Sbjct: 190 NLTLDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLH 249

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L ++      + +S  + ++     +   +      +L +W+   + + + +     + 
Sbjct: 250 RLRRVRAAM-AAGVSRSEAVKALRPPVFFKRTASFNRALELWSLPALTKAVEETQALEYA 308

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347
            ++    +  +  + +  +   A     
Sbjct: 309 CKQTGSPDALLCRRYVSTLTARAAMQAR 336


>gi|83594958|ref|YP_428710.1| DNA polymerase III subunit delta [Rhodospirillum rubrum ATCC 11170]
 gi|83577872|gb|ABC24423.1| DNA polymerase III, delta subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 342

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 151/341 (44%), Gaps = 7/341 (2%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F++K    +       + YG D+GL+ E + Q  + +     DPF +  L+  +++ +
Sbjct: 9   DGFLRKPDPKI----RCVLVYGPDEGLVRERLEQLARTVVADPKDPFRITDLSGDDLRAD 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   +E  + +    ++++ +  ++ +      L+  +   +   +++++  ++   + 
Sbjct: 65  PARLADEAAALAFGGGRRLVRLRQMTDQHA--PRLKAFVEAPVGEALVLVQGGDLTARSA 122

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           LRK+ E  ++  A+ CY D    L  L+  +L   + + + E    L+ANLGGDR  SR+
Sbjct: 123 LRKLFEGASAAAALPCYADEGRSLETLVRATLAEARLAAAPEVIDYLVANLGGDRGVSRS 182

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL KL +YC +   ++       + D+  + ++ + NA  +G    A+   D      M 
Sbjct: 183 ELAKLVTYCGKATSVSLDDALACVGDSAQIGLDMLTNAVAEGDSATALRALDRLGQEGMA 242

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
           + ALL G  + F  L  +  +      S ++ +   +  ++       +  ++ W+   +
Sbjct: 243 TVALLRGLTRHFTRLHLVAGLI-AGGTSVDQALAALKPPVMFKLAPRFRSQVQRWSAERL 301

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            + L  +      A+     E+ ++ + +L +A+ A   + 
Sbjct: 302 AQALDLLLDAEIDAKSSGLPERALVERLLLRLARGAKTASR 342


>gi|329113641|ref|ZP_08242419.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001]
 gi|326697048|gb|EGE48711.1| hypothetical protein APO_0415 [Acetobacter pomorum DM001]
          Length = 337

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 136/328 (41%), Gaps = 8/328 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + + +G D GLI E        I+ +  DPF + VL+    ++       E  + SL
Sbjct: 17  AWRILLLHGEDTGLIKERAQDAVIKIAGSADDPFRVAVLD----RETHDKLMEEATALSL 72

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++ + + S    VL  LE  + ++  + +II+++  +   + LR   EK  +  +
Sbjct: 73  MGGRRVVRVRDASD--TVLKPLEAFLAQS-SDTLIILEAPGLSSRSKLRNFLEKHANCAS 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I CYP+   +L   I   L   +  I+ +A   L + LG DR A+R+E++KL  Y  +  
Sbjct: 130 IGCYPEEGRNLESSITHMLTEHKVRIASDALHWLTSRLGADRAAARSEIEKLCLYAGDSG 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V+  I D   + +E+   A  +G    A    +  LA      A+   FL    
Sbjct: 190 SLTLDDVRASIGDAGSVSLEDAAFAATEGNRIAADTALERALAEDTSPIAIARSFLGHLH 249

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L ++      + +S    ++     +   +     ++L +W+   + + + +     + 
Sbjct: 250 RLRRVRAAM-AAGVSRSDAVKALRPPVFFKRTASFNKALELWSLPALTKAVEETQALEYA 308

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347
            ++    +  +  + +  +   A     
Sbjct: 309 CKQTGSPDALLCRRYVSTLTARAAMQAR 336


>gi|330993122|ref|ZP_08317060.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1]
 gi|329759892|gb|EGG76398.1| DNA polymerase III subunit delta [Gluconacetobacter sp. SXCC-1]
          Length = 340

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 132/329 (40%), Gaps = 11/329 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +G D GLI E      K I    HDPF + +L     + + +    E+ + SL  
Sbjct: 19  RVIMLHGDDVGLIRERATTAAKAICPDLHDPFRVAMLG----RADHARLEEEMTALSLTG 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++I +    T++ +L+ L+  + +   + ++I+++  +   + LR   EK      I 
Sbjct: 75  GRRVIWLRE-GTDEGLLEALKRGLAQQ-SDALVIVEAPGLDSRSRLRGFVEKDAQCALIG 132

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CYP+    L   I + L      I  +A   ++   G DR A+R+E++KL+ +      +
Sbjct: 133 CYPEEGRALEGAIRQMLAAQDVGIDPDALGWMVERAGPDRAATRSEVEKLALFAGRGGRL 192

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQL 260
             + V+  + D   + +E+   A + G+   A   A   L         L    +     
Sbjct: 193 GLEDVRACVGDAAGVSMEDAAFAAMAGQRREADAAAQRALTVDGSSPSNLTRALMSHIHR 252

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L +  +  +   +S    +++ +  +   + +   ++L +W  + +              
Sbjct: 253 LRRARLAMDA-GMSRADAMRQLQPPVFFKRTDSFGQALGLWPADALLRAAQDTQTLELAC 311

Query: 321 RKKKYLEKNIIFQ---TILYIAQTACKNN 346
           R+    +  +  +    +  +AQ A +  
Sbjct: 312 RQTGSPDIVLCLRHVARLCGLAQQARRRR 340


>gi|163796493|ref|ZP_02190453.1| DNA polymerase III [alpha proteobacterium BAL199]
 gi|159178343|gb|EDP62887.1| DNA polymerase III [alpha proteobacterium BAL199]
          Length = 347

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 137/335 (40%), Gaps = 8/335 (2%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F+++    L       + YG D G + E   +  +++     DPF++ VL+  E +
Sbjct: 7   ELEGFVRQPPAGL----RGVLIYGPDGGKVRETAERIGRSVVTDLSDPFNVTVLSGDEAE 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            + +   +E  + SL   ++++ + +     +  + L         + +++++++++K  
Sbjct: 63  ADPARVADEAAARSLMGGRRLVRVRDA--RDRTAEALANAFSGPDTDTLVVVEASDLKAG 120

Query: 125 NTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
             LRK+ E K + + AI+CY D+   L  ++ +S       ++ +A Q LL  LG DR+A
Sbjct: 121 TGLRKLFEDKRSDLAAIACYADDARDLARVLRDSFEAAGVRVASDANQFLLERLGSDRMA 180

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +R EL KL+    +  ++  +   + + D   L I+ +I A   G+    +   D     
Sbjct: 181 TRTELDKLALMVGQGGVLDLETAMEAVGDGAALEIDSLITAAADGRPEGIVSGLDRAFRQ 240

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 +L      FQ L  +   +     +    ++     +       +   +  W  
Sbjct: 241 GESPIRVLRTAQGYFQRLH-LAASRAAEGRNPADAVKSLRPPVFFKAVEAMTRQVARWTP 299

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +   L ++       +   + ++    Q ++ +
Sbjct: 300 TALAGALARLGQAEIRCKTTGFPDEAECGQALIDV 334


>gi|162148178|ref|YP_001602639.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542817|ref|YP_002275046.1| DNA polymerase III subunit delta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786755|emb|CAP56338.1| putative DNA polymerase III, delta subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530494|gb|ACI50431.1| DNA polymerase III, delta subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 337

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 123/328 (37%), Gaps = 8/328 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  V + +G D GLI E        I+    DPF + VL+    +        EI + SL
Sbjct: 17  ALRVILLHGDDSGLIRERARLAATAIAPNLDDPFRVAVLD----RDAADRLDEEIFALSL 72

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++ + +       L    +  +    + ++I+++  +     LR +AE      A
Sbjct: 73  AGGRRVVWVRDGGDS---LTAPLKASLARPSDTLVIVEAPGLASRARLRALAEAQADCAA 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+CYP+    L   I + L      I  +A       LG +R A+R E++KL+ Y     
Sbjct: 130 IACYPEEGRALEASIRQMLAEEDIRIDPDALSWFAGLLGPNRAATRGEVEKLALYAGRGG 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            ++   V+  I D   + +E+   A   G    A +  +  LA      A+    L    
Sbjct: 190 QLSLDDVRMCIGDAAGVSLEDAAFAATAGDRAGADIAIERALAEGTSPIAVARSLLSHLH 249

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L +  I  +    S    ++     +   + +   ++L +W    + E   +       
Sbjct: 250 RLRRARIAMD-GGQSRADAMRGLRPPVFFKRTDAFGQALSLWTAARLMEAAEQTQRLELE 308

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347
            ++    +  +  + I  +A TA     
Sbjct: 309 CKQTGAPDLALCRRHIARLAATAMAGRR 336


>gi|296114816|ref|ZP_06833465.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978630|gb|EFG85359.1| DNA polymerase III subunit delta [Gluconacetobacter hansenii ATCC
           23769]
          Length = 339

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 129/333 (38%), Gaps = 9/333 (2%)

Query: 12  KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71
            ST     +  V + +G D GLI E   Q  + I+    DPF + +L     +       
Sbjct: 9   ASTLRDPGAWRVILLHGEDTGLIRERATQAAQVITPELDDPFRVAILG----RDAHDRMA 64

Query: 72  NEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            E  + SL   ++++ +        +   ++E +  +  + ++I+++  ++  + LR + 
Sbjct: 65  EECAALSLVGGRRVVWVREA--RDGLTGPVKECLAADT-DTLLIMEAPGLESRSKLRALL 121

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           EK  +  AI+CYP+    L   I + LL     I  +A          DR A+R E++KL
Sbjct: 122 EKAPNCAAIACYPEEGRVLEGSIRQMLLALGVEIDPDALSWFAERASPDRAATRAEVEKL 181

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHAL 250
             +  +   +T + V+  I D   + +E+   A + G    A +  +  +++ +M     
Sbjct: 182 FLFAGQGGRLTHEDVQACIGDAASVSLEDAAFAAMSGDRAGADLAIERAMSTDRMNPIGA 241

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L     L ++ +  +         +      +   +      ++ IW+ + + +  
Sbjct: 242 ARALLSHIHRLRRVRLAMDA-GQGRADAMSALRPPVFFKRTEQFGRAVTIWDADALMQAA 300

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
                     ++    +  +  + I  +A  A 
Sbjct: 301 TWTQQLELACKQTGSPDVVLCKRHIARLATQAR 333


>gi|323137157|ref|ZP_08072236.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242]
 gi|322397515|gb|EFY00038.1| DNA polymerase III, delta subunit [Methylocystis sp. ATCC 49242]
          Length = 339

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 141/348 (40%), Gaps = 13/348 (3%)

Query: 1   MATIES---HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  ++S    KF+      +FL    F+ +GSD G++ E              DPF  V 
Sbjct: 1   MVAVKSGAAEKFVSAPPDGVFL----FLVFGSDAGMVRERALTIVSKRVDDRRDPFQFVE 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           ++   +  +     +E N+T LF  ++ IL+E  +  K V+  +  +I        +++ 
Sbjct: 57  MSGDAVSADPLALLDEANTTPLFGGRRAILVETGA--KSVIPAVTSLISAPPAACTVVLT 114

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +  +K++  LRK+ E       I C PD +  L  LI+ +L         EA+ +LLA L
Sbjct: 115 AGALKRDAPLRKLVEGAKQGAGIECQPDTEHDLHALIDRTLREAGLVAGPEARGLLLAAL 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G DR+ SR EL KL+ Y      +    V+ I+     +  + ++ A   G++       
Sbjct: 175 GEDRLMSRGELTKLALYMHGREHVEAADVEAIVAHASGVASDRVVTAAFGGEVGA---TL 231

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQE 296
           + + A      A+L G ++    L +  +  E     +   +          M R +L+E
Sbjct: 232 ESYFAQGGDPGAILFGAMRYAVALHRARLAMEREGGRTDAGVTVLMRAGFGFMHRALLEE 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            L+ W    +   +  +      AR    +        +  +A+ A +
Sbjct: 292 HLKRWTSARLGALVEPLRVAQTRARANAGVALMEAENALWEVAKAARR 339


>gi|300024792|ref|YP_003757403.1| DNA polymerase III subunit delta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526613|gb|ADJ25082.1| DNA polymerase III, delta subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 347

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 1   MATIESHK---FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
           M  I++H+   F++     L  +    +F+GSD GL+ E      + ++   + P  ++ 
Sbjct: 1   MVAIKAHQAESFMKSPPAQLAAA----LFFGSDPGLVSERSTVLARTLAARENPPGEILR 56

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           L+  E+ ++      E+    +F+ ++I+        +++   L + I+ +    ++I++
Sbjct: 57  LDDSELDEDTGRLETELQMRPMFASRRIVR---AIAGRRISAQLLKPILSSPFEGLLIVE 113

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +  +K ++TLR + EK  +  A++CYPD    +  LI E L     SI  +A+ +L + L
Sbjct: 114 AGNLKTDDTLRALFEKTENCFAVACYPDAAADIDGLIAEVLSSFSLSIEGDARALLQSRL 173

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G DR  SR E++KL+ + L   +IT + V++++ D   L +E I  A  +G+   A+   
Sbjct: 174 GADRALSRAEIEKLALHSLGKQMITLEDVENVVGDAADLALERIAEAAAEGRTATAMTDF 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              LA+   + A++    + F  L K+    +      +  ++     I   +R+     
Sbjct: 234 GRALAAGESAQAIILVTQRYFLKLHKVRSDVDA-GQRLDDALKAVRPPIFFKQRDAFARQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
           +R W +  + + L +I      AR     E 
Sbjct: 293 IRNWPRPQLDQALRRIAETAKSARLSSRYED 323


>gi|154251731|ref|YP_001412555.1| DNA polymerase III subunit delta [Parvibaculum lavamentivorans
           DS-1]
 gi|154155681|gb|ABS62898.1| DNA polymerase III, delta subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 347

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 144/348 (41%), Gaps = 12/348 (3%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E+ +F  K    +       + YG D GL+ E I    + +     DPF +  L+  +++
Sbjct: 7   EADRFATKPDPKVV----AVLAYGPDAGLVRERIKMLARTVVDDLADPFRVAELSDTDLK 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           ++ +   +E  + ++   ++++ +   +         E  +     + ++++++ E+   
Sbjct: 63  QDPARLSDEAAAIAMLGGRRVVRVRGAAD--ATAKIFESFLENPAGDALVLVEAGELGPR 120

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           ++LR + E   +  AI+CY D+   L ++I   L          A + L  +LG DR  +
Sbjct: 121 SSLRLLFEGAANAAAIACYADDAGVLENVIRTRLANEGLVPEPAALEYLRDHLGSDRGVT 180

Query: 185 RNELQKLSSYC-----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           +NEL+KL  Y       E   +T    +  + D     ++++I+A + G +    +    
Sbjct: 181 QNELEKLILYAGPGKQGEKRAVTLDDARASVGDNAGTSLDDVIDAAMGGDLDGLDVALAR 240

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A++  + A+L+   +    L       E  +   E  I+     +   ++N +Q  ++
Sbjct: 241 ARAAETNAIAILNALSRHLMQLHLATARIETGS-DVEGAIRSFRPPVHFSRKNAVQRQMK 299

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           +WN+  +   L          +     +  I  QT+L IAQ A     
Sbjct: 300 LWNRKRLDRALALALEAEGQCKSSGQPDVAICGQTLLRIAQGARAARR 347


>gi|58038887|ref|YP_190851.1| DNA polymerase III subunit delta [Gluconobacter oxydans 621H]
 gi|58001301|gb|AAW60195.1| DNA polymerase III, delta subunit [Gluconobacter oxydans 621H]
          Length = 334

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 126/319 (39%), Gaps = 8/319 (2%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S    + +G D GLI E   Q  + ++ T  DPF +  L+    ++       E  + SL
Sbjct: 18  SWRAIVLHGEDTGLIRERAAQAVRLVAGTTDDPFQVAQLD----RETQDRLEEEATALSL 73

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
              ++++ +      +  L  L + +++     +I+I++  I   + LR +AE    V +
Sbjct: 74  IGGRRVVWVREG---QDSLAPLFKRVLETDTETLIVIEAPGITARSKLRALAEAHKQVAS 130

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+CYP+    L   + ++L     +I ++A   L   LG DR   R E++KL  Y  E+ 
Sbjct: 131 IACYPEEGRALSQTVTDALGQAGVTIDRDALIWLTGVLGSDRSGVRGEIEKLVLYAGENG 190

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  Q V+D + D     +E+   + + G    A    +  LA      A+    L    
Sbjct: 191 RLDLQAVQDCVGDAGGNSLEDAAFSALCGNRMMADQALERALADGANPVAVARTVLGVLV 250

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L+K+            + ++  +  +   +     ++L  W    +     +       
Sbjct: 251 RLQKV-AQGVQDGQGRAESMKALKPPVFFKRTAAFNQALDRWPLAALSTAARETQAFELA 309

Query: 320 ARKKKYLEKNIIFQTILYI 338
            ++    +  +  + I  +
Sbjct: 310 CKQSASPDMALCRRHIASL 328


>gi|312115575|ref|YP_004013171.1| DNA polymerase III subunit delta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220704|gb|ADP72072.1| DNA polymerase III, delta subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 344

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 140/340 (41%), Gaps = 7/340 (2%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           KF+      +      F+FYGSD   I        + +         L  L+  ++  + 
Sbjct: 11  KFLAAPPPAIGG----FLFYGSDALQIAARAEALSRALLKKLGPDAELARLHDTDLAADP 66

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
                E+ + SLF   +I+ + +L    K    +++ I +      +I ++ ++KK++ L
Sbjct: 67  DRVIVELTTRSLFGGTRIVWLTSLPA--KAQAIVQDAIARPFDGAFLIAQAPDMKKSHKL 124

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            +  E    + AI+CY +++  ++  I          I  EA  ++ A      + +R E
Sbjct: 125 AQSFEAAPYLAAIACYGEDRDSVVAGIRHQAAEAGYEIDGEAAALVAARCDCSALLARAE 184

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            +KL +Y  ED  IT   V+D + D     + +I++A + G    AI+  + ++A++   
Sbjct: 185 TEKLITYAGEDRCITAAQVEDCLNDQQTAGLSDIVDAALDGDGRKAILAFERYMAAEANV 244

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +          L  +    +    S  + I++    +   +++ L   +R W    + 
Sbjct: 245 SPVFVVLASSLLRLHALRAAVDA-GASPMQAIKELRPPVFFKQQDALAAQVRKWTVPALA 303

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             L  ++  +   R K  L ++I  + +L +A+ A   + 
Sbjct: 304 ARLGDLNAALRDTRLKPALAEDIAARFLLTVAKEARAASR 343


>gi|296446252|ref|ZP_06888199.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b]
 gi|296256289|gb|EFH03369.1| DNA polymerase III, delta subunit [Methylosinus trichosporium OB3b]
          Length = 343

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 142/331 (42%), Gaps = 8/331 (2%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++S +  Q+       + F+F+ +G+D GL+ E              DPF  + ++ 
Sbjct: 1   MVAVKSRE-AQRFVDAPPAAIFLFLLHGADAGLVRERALALIAKRVDDRRDPFQCIEMSG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
             +  +  +  +E N+  +F  ++ IL+E  +  K +   LE+++     +  +++ +  
Sbjct: 60  DAVAADPLSLLDEANTVPMFGGRRAILVE--AGSKSINAPLEQLLAAPPRDCAVVVTAGV 117

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +K++  LRK+ E      AI C PD +  L  LI+ESL     + + EA+ +L A LG D
Sbjct: 118 LKRDAPLRKLIEPAKLGAAIECQPDAEQDLEALIDESLRAAGLAATPEARMLLRAALGED 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R  SR EL KL+ Y   +  +  + V+DI+     +  + ++     G    A    D  
Sbjct: 178 RRMSRAELAKLALYKHGETTVEAKDVEDIVAHASAIASDRLVIDAFSGVAAAAGEELDRA 237

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK---IIQKTEKNIIPMKRNILQES 297
           LA       LL G L+    L +  +  +      +    I+ ++   + P  R  L+  
Sbjct: 238 LAGGADPGQLLGGALRYAMALHRARLAADREGGRTDAGVTILMRSGFGVFP--RPALERH 295

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
           L+ W    +   +  +      AR    + +
Sbjct: 296 LKSWTAAKIAGVIAPLREAQRRARVDASVAE 326


>gi|218670995|ref|ZP_03520666.1| DNA polymerase III subunit delta [Rhizobium etli GR56]
          Length = 220

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 113/219 (51%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94
            E   Q      +   DPFSL  L+  ++QK+     +E  S  LF  +K+I I   + E
Sbjct: 2   SERAGQLAGKTGVALDDPFSLTKLDIADLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANE 61

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
           K ++D L  +  K +    +I+++ ++KK + LRK AE   +V+ +  Y D+   L  LI
Sbjct: 62  KYLVDSLALLAEKPLEAAYLIVEAGDLKKGSLLRKTAEAARAVMTVPSYADDSRALNGLI 121

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
           +  L   +  I+  A+Q L+A +GGDRIASRNE++KL+ YC     + E HV +II D  
Sbjct: 122 DAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYCRGLDTVEEHHVTEIIGDAS 181

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
            + +++ ++A + G +   +       +SK     +L  
Sbjct: 182 AISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFIVLQA 220


>gi|296533439|ref|ZP_06896022.1| DNA-directed DNA polymerase III delta subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296266219|gb|EFH12261.1| DNA-directed DNA polymerase III delta subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 345

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 10/330 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + +G D GLI E       ++    +DPF L  L   E          E+ + ++  
Sbjct: 20  RAVLLHGDDAGLIQERAEALVASVVGG-NDPFRLAEL-PREAAAKPGALAGEMAALAMTG 77

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            ++++ + + +    + + ++E +       +++++  E+     LR   E       I+
Sbjct: 78  GRRLVRVRDATD--ALANAVKEALA-GPGEALLVLEGGELTARAKLRTQLEAARDAAVIA 134

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY +    L   I   L     +I   A   L + LG DR+  R E++KL+ Y      +
Sbjct: 135 CYRERGAELAASIGRMLQEQGVAIDPPALDWLSSRLGEDRMLLRREVEKLALYAGAGGRL 194

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           +E+ V     +   L ++E + A   G I  A    +   A      A+L   L+  Q L
Sbjct: 195 SEEDVLACAGEGSTLDLDEALIAATAGDIPLADRALEAAFAEGASPIAVLRAALRHVQRL 254

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
               +            ++     +    +   + +LR+W+  L+      +       +
Sbjct: 255 HLASLAV-ARGQPASAAMEGLRPPVFFRAKPGFERALRLWSPALLEAAGTALLEAEKRGK 313

Query: 322 K----KKYLEKNIIFQTILYIAQTACKNNN 347
                +   +  +    +L +A+ A     
Sbjct: 314 SGSAARPIPDATVARAAVLTLARQAVALRR 343


>gi|148261040|ref|YP_001235167.1| DNA polymerase III subunit delta [Acidiphilium cryptum JF-5]
 gi|326404439|ref|YP_004284521.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301]
 gi|146402721|gb|ABQ31248.1| DNA polymerase III, delta subunit [Acidiphilium cryptum JF-5]
 gi|325051301|dbj|BAJ81639.1| DNA polymerase III delta subunit [Acidiphilium multivorum AIU301]
          Length = 334

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 130/323 (40%), Gaps = 8/323 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG D  L+ E   +  K ++ +  DPF L  L+A   +        E  + +   
Sbjct: 19  RFVLVYGPDTSLVAERARRLAKLVAGSLDDPFRLTELDADTAE----RLPEEAGAQAFGG 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            ++++L+ +    +       E  ++   + +I+    ++   + LR +AEK     AI+
Sbjct: 75  GRRVVLLRDAGDRQV---APVEAALEGKGDALIVAIGGDLPGRSKLRALAEKHAEAAAIA 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY  +       +E +L      I +EA  +  + LGG+  A R+  ++L+ Y   +  +
Sbjct: 132 CYLPDGAARGPALEAALRAAGVGIGREALALAASRLGGETGALRDAAERLALYAGPNGAV 191

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             + V+ ++ D     +++ I+A + G +  A       L       A++   L +   L
Sbjct: 192 DIEAVEAVLDDQGSASMQDAIDAALAGDVKAADHAIGLALEEGAAPVAVIRVLLGELAGL 251

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             +         S    +      +   ++ ++ +++  W +  +   + +        +
Sbjct: 252 RLM-ADAVAGGASPRDAVAARRPPVFFKRQPVVMKAVARWREPAIMAAIERGLRAEADCK 310

Query: 322 KKKYLEKNIIFQTILYIAQTACK 344
           +   + + I+ Q +L +AQ A +
Sbjct: 311 RTGAVPEAIVRQMLLGLAQRAAR 333


>gi|114571498|ref|YP_758178.1| DNA polymerase III subunit delta [Maricaulis maris MCS10]
 gi|114341960|gb|ABI67240.1| DNA polymerase III, delta subunit [Maricaulis maris MCS10]
          Length = 350

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 135/352 (38%), Gaps = 15/352 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           S +      KN   S   ++ YG D+GL  E      + I     DPF+L  L   +++ 
Sbjct: 4   SAREADARVKNPDPSIRAYLIYGPDRGLTHERAQTLVRAILEDPDDPFALTQLTEEDLKS 63

Query: 66  NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEIK 122
           + +   + + + SL   K+++ +     +    +++ ++ +         +++++S ++ 
Sbjct: 64  DPAGLADAMAALSLTGGKRLVRVRLTGETGSGPIIEIIKGLESGSETAEAVLLVESGDLT 123

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
               LRK  E     + I+CY D    L  L E  L +    +++EA+   L  L GDR 
Sbjct: 124 PRGKLRKAFEPAKKAITIACYADTSHSLESLCESMLKVEGLQLAREARTEWLPRLEGDRA 183

Query: 183 ASRNELQKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
            +R E++KL  Y          D  IT + V+ +  D     ++ ++  T+ G +  A  
Sbjct: 184 LARGEIEKLILYKGLRSQRAEGDDTITREDVEAVAADQGEAQLDAVLAPTLLGLLAKADS 243

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
                + +   +  +L    ++   L  +H             + ++       + +  +
Sbjct: 244 AYHRSITAGGSAVGILRALQRRLDQLGAVHAAGGNEG-----AMARSGAPRYGPQADAFK 298

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             L +W    +              ++     + ++   +L +A+ A +   
Sbjct: 299 RQLSLWRGRRLEHARQLAFDAERAVKRSGAPAEALVGDLLLRLARGAAQMGR 350


>gi|304320512|ref|YP_003854155.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis
           HTCC2503]
 gi|303299414|gb|ADM09013.1| hypothetical protein PB2503_04692 [Parvularcula bermudensis
           HTCC2503]
          Length = 351

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 129/354 (36%), Gaps = 11/354 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I++ +     T        V +FYG D GL+ E   +    I    +DPF+ + L+ 
Sbjct: 1   MVAIKTGEIGSWLTARPK-GVAVALFYGPDGGLVQERARRLSHYIVEDVNDPFNAISLSE 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKS 118
            +I+  +    +E  + S    +++I +        K V   L  I      N +++I++
Sbjct: 60  GDIES-VGQLADEAMALSFMGGERLIRLRTPGEKAAKGVTHLLTRIEAGAAPNALVVIEA 118

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            ++KK + LRK  EK     AI CYP     L + I   L     SI   A   L+  +G
Sbjct: 119 GDLKKTSALRKACEKSRFAAAIGCYPQEGKDLAETIRTRLKQESLSIDDAALLRLVTLMG 178

Query: 179 GDRIASRNELQKLSSYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
            D     +EL+KL  Y            +TE  +   +  +      EI + T++G    
Sbjct: 179 DDHGVLSSELEKLILYMGPQSLRAGTAEVTETDIAQALAQSTADATFEIADLTLRGDSPT 238

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
                     + +    +L     +   L  +    E +       ++     I   ++ 
Sbjct: 239 LSEALFRARGAGVSLLGVLRILQGRLARLMTVK-EAEAAGRPRADAMKSVRPPIFYGEQR 297

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
                L  W+   +      +      A++       +I +T+  +A+ A +  
Sbjct: 298 AFTALLEKWSLRDLERAAMTLLEADLAAKQTGVPATEVIERTLFRLARLAQRPG 351


>gi|294085218|ref|YP_003551978.1| DNA polymerase III subunit delta [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664793|gb|ADE39894.1| DNA polymerase III, delta subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 344

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 139/333 (41%), Gaps = 8/333 (2%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           +       F+F+G+D GLI E       + S    D FS+  L++  I+ ++S   + ++
Sbjct: 14  HPPAHMRAFLFHGNDIGLIHERALALASHYSDNLDDVFSVTRLDSRAIENDVSVIADALS 73

Query: 76  STSLFSKKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKI 130
           S ++F+  +++L+    TE  +++  +  +        +   ++I+++ E    + + K+
Sbjct: 74  SIAVFADTRLVLVRGRGTE--LVEACKLALTPRDNTPPLEGAVLIVEARETTTRHAIVKL 131

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E      +I CY D+   + DL++ S      +I +    +++A LG DR +SR E++K
Sbjct: 132 FETGDICASIGCYADDSGTIRDLVQTSFAALSINIDRPVMDLIVAKLGADRASSRREIEK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS    +   +T Q ++D + D+ VL I+++  A   G I           +       +
Sbjct: 192 LSLMAGQGGTLTAQDIEDALEDSTVLAIDDVAGAVADGDIPRLQSAITKAWSEDANPVMV 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           + G    F+ L          + S +  I+     +    +  +   L  W        L
Sbjct: 252 IRGCHNYFRSLLIAAHAVSTGS-SRDMAIKSLRPPVHFKLQGRMAAQLNKWGYQQAMAAL 310

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
            K+       +     ++ I  Q +L +   A 
Sbjct: 311 DKLQDIELALKSSSPDDRVICMQGLLGLCLRAR 343


>gi|73666710|ref|YP_302726.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake]
 gi|72393851|gb|AAZ68128.1| DNA polymerase III, delta subunit [Ehrlichia canis str. Jake]
          Length = 334

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 145/329 (44%), Gaps = 16/329 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALE 62
           + H F          S    + YG+D G I    N +K+ I   I  +  FS   ++   
Sbjct: 7   KLHSFFNNP-----QSFNNILIYGNDYGKI----NMYKEKIIKHINTNTEFSTSNIDYPT 57

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + KN ST + E+ + S+F K K+I+I N   EK +   L+ I+  NI  + +II S E+ 
Sbjct: 58  VNKNPSTLFIELTTISMFCKNKLIIIAN--GEKSISQELKNILNNNIGRNYVIITSGELS 115

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
            +++LR+  +   +  +I CY D+  +L  +I + L   +   +    Q L + L  +  
Sbjct: 116 IDSSLRQYYDNSLNAASIGCYKDDNDNLAFIISDFLTQNKVHYNCTTLQYLCSVLSQNCN 175

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A   ELQKL  Y   +  +T + +++ +        E++  +  +  + N    ++  L 
Sbjct: 176 ALEPELQKLMLYIGNNKNLTTKDIQESLLTEIDPISEDLCISIAEKNLENFTKFSNILLK 235

Query: 243 SKMPSHALLHGFLQKFQLLE-KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           +K    AL+   ++ F  LE  I ++K+  +I+  + ++     I       +++ +   
Sbjct: 236 NKFTPIALIRILIKYFLRLEYLIRVVKDGESIN--QALKSIHPPIFFKSIPTIKKHISTI 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNI 330
           +   V   + K+       +K    ++ I
Sbjct: 294 SYFEVNNIIKKLAEIEIQCKKSDLNQEVI 322


>gi|57238818|ref|YP_179954.1| hypothetical protein Erum0870 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578747|ref|YP_196959.1| hypothetical protein ERWE_CDS_00830 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58616807|ref|YP_196006.1| hypothetical protein ERGA_CDS_00800 [Ehrlichia ruminantium str.
           Gardel]
 gi|57160897|emb|CAH57802.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416419|emb|CAI27532.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
 gi|58417373|emb|CAI26577.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 339

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 143/307 (46%), Gaps = 5/307 (1%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG+D G I    ++   +I       F++  ++   I KN  T + E+++  +F  +
Sbjct: 21  ILIYGNDYGKISMYRDKIISSIRSNVD--FTITNIDFPSINKNPGTLFVELSTVPMFCTR 78

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           K++++ N   EK + + L +I+  NI N+ +II + E+  ++TLR+  +  +S ++I CY
Sbjct: 79  KLLILTN--GEKVLSNELRDILEHNIGNNYVIIIAGELPNDSTLRQYYDSSSSAVSIGCY 136

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            D+  +L  ++ + L       + E  Q L  +L  +  A ++EL+KL  Y      +T 
Sbjct: 137 KDDNNNLAFIVSDFLTENNVQFNNEILQYLCHSLSKNPHALQSELEKLILYIGNSKNLTI 196

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           Q +++ +        +++  + ++  I N    ++  L +K     L+   L+ F  LE 
Sbjct: 197 QSIQEGLLTELDPVSDDLYISIVERDIENFTKFSNILLKNKFTPILLIRVLLKYFLRLEY 256

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           I I    S I  +++++  +  +      I+++ +   + + V   + K+       +K 
Sbjct: 257 I-IRTITSGIPIDQVLKLIQPPVFFKLVPIIKKHVVNVSYDEVNYIIRKLLEIEIQCKKS 315

Query: 324 KYLEKNI 330
               + I
Sbjct: 316 DSNHEII 322


>gi|218682742|ref|ZP_03530343.1| DNA polymerase III subunit delta [Rhizobium etli CIAT 894]
          Length = 212

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 111/209 (53%)

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           S++ I  Y D+   L  LI+  L   +  I+  A+Q L+A +GGDRIASRNE++KL+ YC
Sbjct: 1   SIMTIPSYADDSRALNALIDTELGTEKLGITPAARQALIALIGGDRIASRNEVRKLALYC 60

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                + E HV +II D   + +++ ++A + G +   +       +SK     +L   L
Sbjct: 61  RGYPTVEEHHVTEIIGDASAISVDDAVDAILSGDLNAFLHAMQKISSSKTAIFLVLQACL 120

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++FQLL+ +    E   +   +I+Q   +++   ++ I++++LR W    +    +++  
Sbjct: 121 KQFQLLDTMRAEMEEKRLQAPQIMQTMGRHLHFRRKPIIEQALRHWTAESIARESNRLQA 180

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACK 344
            I  +R+++ LE ++  QT+L     + +
Sbjct: 181 AILQSRRRQVLEDSVAMQTLLSTTLQSGR 209


>gi|88657564|ref|YP_506954.1| hypothetical protein ECH_0126 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599021|gb|ABD44490.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 334

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 146/328 (44%), Gaps = 14/328 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALE 62
           + H F      NL L++ + + YG+D G I      +KK I   +  +  F++  ++   
Sbjct: 7   KLHSFFN----NLQLTNNI-LIYGNDYGKIS----MYKKKIINHVNTNSEFAISNIDFST 57

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + KN ST + E+ + S+F + K+I++ N   EK +   L+ ++  NI N+ III S E+ 
Sbjct: 58  VNKNPSTLFIELTTISMFCQNKLIILAN--GEKSISQELKHVLSNNIGNNYIIITSGELS 115

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
            ++TLR+  +   +  +I CY D+  +L  +I + L   +   +    Q L   L  +  
Sbjct: 116 PDSTLRQYYDNSRNAASIGCYKDDNDNLSFIISDFLTKNKVQYNATTLQYLHNVLSQNCN 175

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A + EL+KL  Y   +  +T Q++++ +        E++  +  +  + N    +D  L 
Sbjct: 176 ALQPELEKLILYIGNNKNLTIQNIQESLLTEIDPISEDLCVSVAEKNLENFTKFSDVLLK 235

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +K    AL+   ++ F  LE + I    +     + I+     I       +++ +    
Sbjct: 236 NKFTPIALIRILIKYFSRLEYL-IRTIKNGEPINQAIKSIHPPIFFKSIPTIKKHVSAIP 294

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNI 330
              +   + K+       +K    ++ I
Sbjct: 295 YAEINNIIKKLVEIEIQCKKSDSNQEVI 322


>gi|91762513|ref|ZP_01264478.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718315|gb|EAS84965.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 331

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 151/328 (46%), Gaps = 13/328 (3%)

Query: 21  HFVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +   +FYG ++GL  E I N F++N     H           EI  +I+ F+N + + S 
Sbjct: 16  YKFHLFYGENEGLKEENIKNLFEENYKDKIH------RYEEKEILDDINIFFNSVLTKSF 69

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F  +K+I+I   +   K+   +EE+I KN  +  II+ S  ++K +TLRK  EK  S++ 
Sbjct: 70  FDNEKLIIINRATD--KIKTIIEELIEKNPEDIKIILNSKNLEKKSTLRKFFEKEKSIVC 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +  Y DN   L  +I       +  IS++   +L+    GDR    NEL+K+ ++ L   
Sbjct: 128 VPFYEDNNQTLNSIISLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENFSLNKK 187

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  Q +  +          E+++ ++       + +      S   +  ++   L K +
Sbjct: 188 NLNIQEIIKLTNLADNYSASELVDHSLAKNTRKTVTILSENNYSDEDNIIIIRTLLAKLK 247

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L KI+ + +  N + E+ I   +  I    + ++ + +R W K+ + + ++K +    L
Sbjct: 248 RLVKIYDLIDEKN-NIEQAISACKPPIFWKDKPLVTQQVRSWKKDGLEQLIYKTNEIELL 306

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKNNN 347
            +K   L KNI+     +I   + K NN
Sbjct: 307 VKKNSVLAKNILAD---FIINNSKKTNN 331


>gi|83944974|ref|ZP_00957340.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851756|gb|EAP89611.1| hypothetical protein OA2633_10104 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 348

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 138/346 (39%), Gaps = 13/346 (3%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
             ++      S+ V++ YG D G++ E  +   K +     DPFS+  L   +I+ + + 
Sbjct: 8   ADRALAQPDGSYTVYLIYGPDGGMVRERADTLSKALVKDPDDPFSVTRLTDEDIKADPAA 67

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLR 128
             + + + SL    +++ +        V   + E+          ++I+S ++KK + LR
Sbjct: 68  LADALAALSLTRDPRLVRLRLSGDSAPVAKLIAEVDEGVTPSEATLVIESGDLKKTSKLR 127

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K AE     LA  CY D    L+ L E+       ++  EA+ +L   L GDR  +R+E+
Sbjct: 128 KAAEDGKRTLAAPCYADTARDLITLAEDMFRAEHLTLEPEARAMLAPFLEGDRALARSEI 187

Query: 189 QKLSSYC-------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
            KL  Y         +D +IT Q + DI        +++I++  + G I  A       L
Sbjct: 188 DKLILYKGLADQREGQDDVITRQDIADISAVGSEAAMDQILDPALGGDIRAADAAYARGL 247

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           ++ +    +L G  ++    +  H     S       + +          +  + S ++W
Sbjct: 248 SAGLNPVGVLRGLQRRIDQFDTFH-----SGGGDAGALARAGAPRFGPPADQFKRSAKLW 302

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
               + +            ++     + I+   IL +++ A +   
Sbjct: 303 TGRRLDQARKYAFDAERAVKRSGAPAEAIVGDLILRLSRAAAQARR 348


>gi|71083061|ref|YP_265780.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062174|gb|AAZ21177.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 331

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 153/335 (45%), Gaps = 13/335 (3%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
            K    ++  ++FYG ++GL  E I N F+KN     H           EI  +I+ F+N
Sbjct: 9   PKIKLNNYKFYLFYGDNEGLKEENIKNLFEKNYKDKIH------RYEEKEILDDINIFFN 62

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            I + S F  +K+I+I   +   K+   +EE++ K   +  II+ S  ++K ++LRK+ E
Sbjct: 63  NIFNKSFFDNEKLIIINRATD--KIKTIIEELMEKKPEDIQIILNSKNLEKKSSLRKLFE 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  S+  I  Y DN   L  +I       +  IS++   +L+    GDR    NEL+K+ 
Sbjct: 121 KEKSIACIPFYEDNNQTLNSIISLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIE 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           ++ L    +  Q +  +          E+++ ++       + +      S   +  ++ 
Sbjct: 181 NFSLNKKNLNIQEIIKLTNIADNYSASELVDHSLAKNTRKTVTILGENNYSDEDNIIIIR 240

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L K + L KIH + E  N + E+ I   +  I    + ++ + +R W K+ + + ++K
Sbjct: 241 TLLAKLKRLVKIHELVEEKN-NIEQAITACKPPIFWKDKPLVIQQIRSWKKDGLEQLIYK 299

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            +    L +K   L KNI+     +I   + K NN
Sbjct: 300 TNEIELLVKKNSVLAKNILAD---FIINNSKKTNN 331


>gi|315497184|ref|YP_004085988.1| DNA polymerase iii, delta subunit [Asticcacaulis excentricus CB 48]
 gi|315415196|gb|ADU11837.1| DNA polymerase III, delta subunit [Asticcacaulis excentricus CB 48]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 133/347 (38%), Gaps = 14/347 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E   F++   +++       + YG D+G + E      + I     DPF++ +L   +I 
Sbjct: 8   EIEGFLKAPPRDVIAC----LIYGKDRGQVLERGQALAQKIVPDIKDPFNVSLLTDTDID 63

Query: 65  KNISTFWNEINSTSLFSKKKIILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSN 119
            + +   +E+ + SL   ++++ +    E  + +K+V   L+  +  ++  +   +I++ 
Sbjct: 64  ADPARLEDELQAQSLMGGRRLVRLKFFSEKAALDKQVAAALKAHVAGDLNRDAFFLIEAG 123

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            +  ++ +RK+A+   ++ +I+CY D    ++ +  E+L   + +++ +A  I  A L  
Sbjct: 124 GLGGDSAVRKLADADKAIASIACYEDETGDVVRMARETLAQNEVALTPDAMDIFAARLPK 183

Query: 180 DRIASRNELQKLSSYCLEDILITEQH--VKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +R  +R E+++L  +       T     +++ +       + +        K+  A    
Sbjct: 184 ERGVARQEIERLCLFIGPGSRRTIDDKELQEFLGVEPDASLFDAALQAFGAKMALAQAGL 243

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A      A L         L  I        I  ++  +     +   +       
Sbjct: 244 RRAFAEGEDGSAALRALNGHLVKLRLIQAQI-AKGIDAKQAARAAG--VFWKQEAEFLRQ 300

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            R W+   +     ++       +     +  +  +  + IA  A +
Sbjct: 301 ARAWSDFYLDPLSKELIETDKQCKSTGMPDLLLAERLYMSIAGRARR 347


>gi|221236803|ref|YP_002519240.1| DNA polymerase III subunit delta [Caulobacter crescentus NA1000]
 gi|220965976|gb|ACL97332.1| DNA polymerase III, delta subunit [Caulobacter crescentus NA1000]
          Length = 350

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 134/346 (38%), Gaps = 14/346 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
             +F+++ T ++       + YG D+G++ +  N   + +     DPF    L   ++  
Sbjct: 9   VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDA 64

Query: 66  NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120
           + +   +E+++ SL   ++++ +         +K+  + L   +   +  +   ++++  
Sbjct: 65  DPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK      I CY D    L  L  ++L   + S++ EA ++ ++ L  +
Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALELFVSRLPKE 184

Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           R  +R E+++L+ Y      I  T   + D +       + +       GK+  A     
Sbjct: 185 RGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQQALR 244

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A      A +         L ++ +    + +  +   +     +   +        
Sbjct: 245 RAAAEGEGGPAAVRAMGYYLGRLRRV-LTLHKNGVDLQAAAKAAG--VFWKQEREFLRQA 301

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           R WN   + E   +I       +     ++ I  +  L IA  A +
Sbjct: 302 RAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARR 347


>gi|16127981|ref|NP_422545.1| DNA polymerase III subunit delta [Caulobacter crescentus CB15]
 gi|13425525|gb|AAK25713.1| hypothetical protein CC_3751 [Caulobacter crescentus CB15]
          Length = 350

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 134/346 (38%), Gaps = 14/346 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
             +F+++ T ++       + YG D+G++ +  N   + +     DPF    L   ++  
Sbjct: 9   VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALARRVVERPDDPFDTAQLTDGDLDA 64

Query: 66  NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120
           + +   +E+++ SL   ++++ +         +K+  + L   +   +  +   ++++  
Sbjct: 65  DPAKLEDELSAMSLMGGRRLVRLRLSSDKAGPDKQAAEALTRHVEGQLNPDAFFLVEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK      I CY D    L  L  ++L   + S++ EA ++ ++ L  +
Sbjct: 125 LGRDSQLRKVGEKANGCAVIPCYEDEAGDLARLTRDTLANDKVSVNSEALELFVSRLPKE 184

Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           R  +R E+++L+ Y      I  T   + D +       + +       GK+  A     
Sbjct: 185 RGVARAEIERLALYLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQQALR 244

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A      A +         L ++ +    + +  +   +     +   +        
Sbjct: 245 RAAAEGEGGPAAVRAMGYYLGRLRRV-LTLHKNGVDLQAAAKAAG--VFWKQEREFLRQA 301

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           R WN   + E   +I       +     ++ I  +  L IA  A +
Sbjct: 302 RAWNLEAILEIQGEILTADRACKTSGSPDQLIAERLALMIAGRARR 347


>gi|295691569|ref|YP_003595262.1| DNA polymerase III subunit delta [Caulobacter segnis ATCC 21756]
 gi|295433472|gb|ADG12644.1| DNA polymerase III, delta subunit [Caulobacter segnis ATCC 21756]
          Length = 350

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 137/346 (39%), Gaps = 14/346 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
             +F+++ T ++       + YG D+G++ +  N   K +     DPF    L   +++ 
Sbjct: 9   VERFLKEPTPDI----RAVVIYGKDRGVVRDRANALAKRVVERPDDPFDTAQLTESDVEA 64

Query: 66  NISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNE 120
           + +   +E+++ SL   ++++ +         +K   + +   +  ++  +   +I++  
Sbjct: 65  DPAKLEDELSAMSLMGGRRLVRLRLNGEKAGPDKAAAEAVTRHVEGHLNPDAFFLIEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +++ LRK+ EK +    I CY D    L  L  ++L   + S++ EA  + ++ L  +
Sbjct: 125 LGRDSQLRKVGEKASGCAVIPCYEDEAGDLARLTRDTLANDKVSLNSEALDLFVSRLPKE 184

Query: 181 RIASRNELQKLSSYCLEDILI--TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           R  +R E+++L+ +      I  T   + D +       + +       GK+  A     
Sbjct: 185 RGVARAEIERLALFLGPGSGINATAADLTDFLGVEPEASLSDAAADAFGGKVGAAQAALR 244

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A      A +         L ++ +    + +  +   + +   +   +        
Sbjct: 245 RAAAEGEGGPAAVRAISYYLGRLRRV-LTLHKNGVDLQAAAKASG--VFWKQEREFLRQA 301

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           R WN   + E   ++ +     +     ++ I  +  L IA  A +
Sbjct: 302 RAWNLEAILEIQGEVLNADRACKTSGSPDQLIAERLALMIAGRARR 347


>gi|329847391|ref|ZP_08262419.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19]
 gi|328842454|gb|EGF92023.1| DNA polymerase III, delta subunit [Asticcacaulis biprosthecum C19]
          Length = 350

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 125/351 (35%), Gaps = 18/351 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E     +    ++       + YG D+  + E      K I     DPF++ ++   +I+
Sbjct: 8   EIDALFKNPPSHVLG----VLIYGKDRSQVIERATVLAKRIVPDITDPFNVSLITDTDIE 63

Query: 65  KNISTFWNEINSTSLFSKKKIILI----ENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSN 119
            + +    E+ S S+   ++++ +    E  + +K V   +++    +      +II++ 
Sbjct: 64  NDPARLEGELQSLSMMGGRRLVRLKFFTEKAALDKAVAAVVKQHAAGDYNREAFLIIEAG 123

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            +   + LR++A+   ++++I+CY D    ++ +  E+      S++  A  I    L  
Sbjct: 124 SLGGESALRRLADADKALVSIACYEDETGDIIRMAREAFAANGVSLTTGAMDIFAQRLPK 183

Query: 180 DRIASRNELQKLSSYCLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +R  +  E+++L  +       T +   ++D +       + +       G++ +A    
Sbjct: 184 ERGIAHQEIERLILFIGPHSHKTLEERELQDFLGVEPEASLFKAAQDAFGGRMKSAQAGL 243

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQ 295
               A        +      +  ++ +              K+       +       + 
Sbjct: 244 RRAFAEGETGPDAMRALSGHYNKVKLLKTNMSKGMGGKEAAKVS-----GVFWKDEADML 298

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              + W+ +L+      +       +     +  I  +  L IA  A +  
Sbjct: 299 RQAQTWSFDLLDPLASDLIEADKQCKSTGMPDLLIAERLYLQIAGKANRAG 349


>gi|167648983|ref|YP_001686646.1| DNA polymerase III subunit delta [Caulobacter sp. K31]
 gi|167351413|gb|ABZ74148.1| DNA polymerase III, delta subunit [Caulobacter sp. K31]
          Length = 350

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 129/345 (37%), Gaps = 14/345 (4%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            +F++    ++       + YG D+G++ +  +Q  K +     DPF    L   ++   
Sbjct: 10  ERFLRDPAADV----RAVVIYGRDRGVVRDRADQLVKRLFERPDDPFDTAQLTESDLDAQ 65

Query: 67  ISTFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEI 121
                +E+++ S+   ++++ +         +K+  + L   +   +  +   +I++  +
Sbjct: 66  AGKLEDELSALSMMGGRRLVRLRLTGEKGGPDKQAAEALTRHVEGQLNPDAFFLIEAGAL 125

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
            +++TLRK+AEK      I CY D    L  L  E++   + S++ EA  + ++ L  +R
Sbjct: 126 GRDSTLRKVAEKAAGAAVIPCYEDEAGDLARLTRETMAKDKVSLNGEALDLFVSRLPKER 185

Query: 182 IASRNELQKLSSYCLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
             +R E+++L+ +       + T   + D +       + +       G++  A      
Sbjct: 186 GVARAEIERLALFLGPGSGAVATPADLTDFLGVEPEASLGDAAVDAFGGRLGPAQAGLRR 245

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A      A +         L +  +    + +      + +   +            R
Sbjct: 246 AAAEGEGGPAAVRAMGYHLGRLRRT-LTLHKNGVDLAAAAKASG--VFWKTEREFLRQAR 302

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            W  + +     +I       +     ++ I  +  L IA  A +
Sbjct: 303 AWTLDQLLAVQAEILAADKACKTSGSPDQLISERLALQIAGKARR 347


>gi|302381489|ref|YP_003817312.1| DNA polymerase III subunit delta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192117|gb|ADK99688.1| DNA polymerase III, delta subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 350

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 126/347 (36%), Gaps = 14/347 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E  +F+ +    +  +    + +G D+  + E      K I+   +DPF++ VL   +I 
Sbjct: 8   EVDRFLARPDAGIRAA----VIHGKDRSGVAERAEILCKAITPDLNDPFNVTVLTDSDID 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSN 119
            + +     + + S+   ++++ +   + +  +   L   +  +       + +++I++ 
Sbjct: 64  GDEARLEEALTALSMIGGRRLVRVRLGADKASIDKMLAAALKTHGEGGYNPDAMLVIEAG 123

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            + +++ LRK AE   + + I+CY D    +  +  E+L   +  ++ +A  + +A L  
Sbjct: 124 ALGRDSVLRKAAEAGKASVGIACYEDEAGDIARMTREALAADKVGLTSDALAVFVARLPK 183

Query: 180 DRIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +R   R E+++L+ Y        I  + +   +       + +       G+   A    
Sbjct: 184 ERGLMRQEIERLALYVGPGSGRTIDVEELDAHLGVEADASLADAALQAFGGRPAPAQSGL 243

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              LA    +   +         L K+  I                  +   +   +   
Sbjct: 244 RRALAEGESAVMAVRSASIH---LGKLRRINVLQGSGAGAKEAAKAAGVFWKQEAEMLRQ 300

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            R W    +      ++      +     E  I  + +L I+  A +
Sbjct: 301 ARAWRLEELDVVQDSVNTADVATKTTGLPEHLIAERLLLEISARARR 347


>gi|329891185|ref|ZP_08269528.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846486|gb|EGF96050.1| DNA polymerase III, delta subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 350

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 129/348 (37%), Gaps = 14/348 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
             +F++     +  +    + +G D+  + E      + I+   +DPF++ +L   +I  
Sbjct: 9   VDRFLKAPDAGVRAA----VIHGKDRSGVTERALTLCRTITPDLNDPFNVTLLTEADIDG 64

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSNE 120
           +       + + S+   ++++ I     +  V   +   +  +       + +++I++  
Sbjct: 65  DAVRLEEALTALSMIGGRRLVRIRMSDGKAGVDKAVAAALTAHAEGAYNPDAMLVIEAGA 124

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + + + LRK AEK    +AI+CY D    +  +  E+L   +  +S +A    +A L  +
Sbjct: 125 LGRESALRKAAEKAQGAVAIACYEDEVGDVARMTREALGADKVGLSSDALDRFVARLPRE 184

Query: 181 RIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           R   R E+++L  Y        I  + +   +       + +       G+   A     
Sbjct: 185 RGLMRQEIERLILYIGPGSGRTIDIEELDAHLGVEPDASLSDAALQAFGGRPGPAQAGLR 244

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             LA    +   +         L +I++++     + E         +   +   +    
Sbjct: 245 RALAEGESAVMAVRMASLHLGKLRRINVLQANGAGAKEAAKAAG---VFWKQEAEMLRQS 301

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           R W   L+ E    ++    + +     E  I  + +L IA  A +  
Sbjct: 302 RAWRLELLDEVQDSVNTADVMTKTTGMPEALIAERLLLEIAARAKRMG 349


>gi|254418443|ref|ZP_05032167.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3]
 gi|196184620|gb|EDX79596.1| DNA polymerase III, delta subunit [Brevundimonas sp. BAL3]
          Length = 350

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 131/347 (37%), Gaps = 14/347 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E  +F++     +  +    + +G D+  + E      + I+   +DPF++ VL   +I 
Sbjct: 8   EIDRFLKAPDPAVRAA----VIHGKDRSGVAERAEVLCRAITPDLNDPFNVTVLTDSDID 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNIC-----NHIIIIKSN 119
            + S     + + SL   ++++ I   + +  V   +   +  +       + +++++++
Sbjct: 64  SDESKLEEALTAMSLMGGRRLVRIRLSALKPGVDKAVAAAVKIHAEGGYNPDAMLVVEAD 123

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           ++ + + LRK AEK    + I CY D    +  +  E+L   +  ++ +A    +  L  
Sbjct: 124 QLGRESALRKTAEKEAGAVGIVCYEDETGDIARMTREALAADKVGLTADALDRFVGRLPR 183

Query: 180 DRIASRNELQKLSSYCLE--DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +R   R E+++L+ +        I  + ++  +       + +        +   A    
Sbjct: 184 ERGLMRQEIERLALFIGPGSGRTIDVEELEQHLGVEPDASLSDAALQAFGARPGPAQSGL 243

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    S   +         L +I+I++     + E         +   +   +   
Sbjct: 244 RRAFAEGESSVLAVRSAALHLGRLRRINILQANGAGAKEAAKAAG---VFWKQEAEMLRQ 300

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            R W    + E L  I+      +     ++ I  + +L IA  A +
Sbjct: 301 ARAWRLEALDEVLDSINTADVATKTTGMPDQLIAERLLLEIAGRARR 347


>gi|197106980|ref|YP_002132357.1| putative DNA polymerase III, delta subunit [Phenylobacterium
           zucineum HLK1]
 gi|196480400|gb|ACG79928.1| putative DNA polymerase III, delta subunit [Phenylobacterium
           zucineum HLK1]
          Length = 350

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 124/342 (36%), Gaps = 10/342 (2%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           I++       +    + YG D G++ +  +Q          DPF + +L  +++  +   
Sbjct: 9   IERFLAKADAAVRAALIYGRDLGVVRDRGHQLAAKTVPNPDDPFDVAILTEVDVADDPPR 68

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-----ICNHIIIIKSNEIKKN 124
              E+ + SL   ++++ +   S +  V   + E + ++       +   +I++  + ++
Sbjct: 69  LEGELAAQSLMGGRRLVRLRLSSEKPAVDKAVAEALERHAKGELNPDAFFLIEAGNLGRD 128

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           + LRK+ EK  +   I CY D    +  L++E+L      ++ +A  + +A +  +R  +
Sbjct: 129 SALRKVGEKQPACATIPCYEDEPGDVARLVKETLARDNVGLNADALALFVARMPKERGVA 188

Query: 185 RNELQKLSSYCL-EDILITE-QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           R E+++L+ +       I     ++D +       + +       G++  A         
Sbjct: 189 RQEIERLALFLGPGSGTIAAPAQLEDFLGVEPEASLFDAAADAFGGRLAEAQAGLRRAAQ 248

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                 A +         L +   + +      E         +   +        R W+
Sbjct: 249 EGESGPAAVRAIGMHLGKLRRTLTLAKAGAGLQEAAKAS---GVFWKQEREFLRQARAWS 305

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
              +     ++       +     ++ I  +  L +A  A +
Sbjct: 306 LEELDRIQPEVLAADKACKTAGSPDRLIAERLALTVAGRARR 347


>gi|218660469|ref|ZP_03516399.1| DNA polymerase III subunit delta [Rhizobium etli IE4771]
          Length = 178

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 87/164 (53%)

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +V+ +  Y D+   L  LI+  L   +  I+  A+Q L+A +GGDRIASRNE++KL+
Sbjct: 3   AARAVMTVPSYADDSRALNGLIDAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLA 62

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC     + E HV +II D   + +++ ++A + G +   +       +SK     +L 
Sbjct: 63  LYCRGLDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNGFLHAMQKISSSKTAIFLVLQ 122

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
             L++FQLL+ +    E   +   +++Q   +++   ++ IL++
Sbjct: 123 ACLKQFQLLDTMRAEMEEKRLQAPQVMQTMGRHLHFRRKPILEQ 166


>gi|294010026|ref|YP_003543486.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S]
 gi|292673356|dbj|BAI94874.1| DNA polymerase III delta subunit [Sphingobium japonicum UT26S]
          Length = 345

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 125/344 (36%), Gaps = 11/344 (3%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            K +  + + L      F+ +G D+     L  + ++ +          + L+   ++ +
Sbjct: 9   EKALDAAGQGLAPDCRFFLLHGPDEAGSAALAKRLERAMGPDAER----IDLDPSTLRDD 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   +E  S S+F  ++   I      ++ +  L  ++      + +I  +  +K  + 
Sbjct: 65  PARLADEAASFSMFGDRR--WIRVTGMGEESVPALNALLEAEAAGNPVIAVAGALKGTSK 122

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L K+A      +A + Y  +      +       G   +S E  + +     GDR     
Sbjct: 123 LLKLALDHKQTMAFASYQPDAREAEQIAVAIGREGGLRLSPELGRRIADLTNGDRTLMAG 182

Query: 187 ELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           E++KL  Y           TE+ +  +  D        ++NA + G +            
Sbjct: 183 EVEKLILYLDAAPDRPREATEEALDALSADNPDSDAAPLVNAVLGGDLRGMHRELGRLAE 242

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +     A+L   L +  LL  I    + S    +  ++   K +   ++ ++   +RIW+
Sbjct: 243 AGTAMAAVLRPLLTRAMLLANIRADFDESGR-LDGAVEAAGKAVFWKEKGVVTRQVRIWD 301

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              +   + ++      +R  + L   ++   +L IA+ A +  
Sbjct: 302 AAGIARVIQRLAQAERASRSGRGLGDLMVRHELLAIARQAARER 345


>gi|307297020|ref|ZP_07576836.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877546|gb|EFN08774.1| DNA polymerase III, delta subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 345

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 124/344 (36%), Gaps = 11/344 (3%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            K +  + +        F+ YG D+     L  + ++ +          + L+   ++ +
Sbjct: 9   EKALDAAGQGSAADCRFFLLYGPDEAGSTTLAKRLERAMGPDAER----IDLDGPTLRDD 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   +E  + S+F  K+ I I  +  E   L  L  ++      + +I  +  +K  + 
Sbjct: 65  PARLADEAAAFSMFGDKRWIRINGMGEE--SLPALTALLEAEAAGNPVIAVAGALKPTSK 122

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L K+A      +A + Y  +      +       G   +S +  + +     GDR     
Sbjct: 123 LLKLALDHKQTMAFASYQPDAREAEQIAVAIAREGGLRLSSDLGRRIADLTNGDRTLMAG 182

Query: 187 ELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           E++KL  Y           T + +  +  D        ++NA + G +            
Sbjct: 183 EVEKLILYLDAAPDRPREATGEALDALSADNPDSDAAPLVNAVLGGDLRGMHRELGRLAE 242

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +     A+L   L +  LL  I    + S    E  ++   K +   ++ ++   +RIW+
Sbjct: 243 AGTTMAAVLRPLLTRAMLLANIRADFDDSGR-LEGAVEAAGKAVFWKEKGVVTRQVRIWD 301

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              +   + ++      +R  + L   ++   +L IA+ A +  
Sbjct: 302 ATGIARVIQRLAQAERASRSGRGLGDLMVRHELLAIARQAARER 345


>gi|148284276|ref|YP_001248366.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str.
           Boryong]
 gi|146739715|emb|CAM79535.1| DNA polymerase III, delta subunit [Orientia tsutsugamushi str.
           Boryong]
          Length = 339

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 16/320 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79
                YG+D GLI     +  K  +     +D   L   + + I          +NS +L
Sbjct: 21  RAIAVYGNDHGLIDYRCQEITKLFNANLRIYDYRELTEADFIFI----------LNSNNL 70

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           FS+++I+ I N      +   L++ +  N  N +I++  NE   ++T R+  E    + A
Sbjct: 71  FSQREIVKIYNTPG--NINAALKKALTFNNQNFLIVL-GNEFSASSTTRQWFETQKYLAA 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           + CY +N   +  L+ + +    K+I+ EA         GD+    NE+ KL  YC +  
Sbjct: 128 LGCYTENSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCD 187

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+++ V   I    +   + +     +G   N     +    + +P   +L   ++ + 
Sbjct: 188 TISKKEVNKCISTEILGTSDLMCIYFAKGIAMNFFKEVEKIRNNNIPDVWILRALIRYYI 247

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  I ++K    +S E+ I+  + +I        Q   +    N V  TL+++      
Sbjct: 248 NL-YIVLMKREHGVSIEQAIKSIQPSIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELS 306

Query: 320 ARKKKYLEKNIIFQTILYIA 339
            +   +   NII    L I 
Sbjct: 307 VKTTHHHINNIIEVVFLKIT 326


>gi|157803359|ref|YP_001491908.1| DNA polymerase III subunit delta [Rickettsia canadensis str.
           McKiel]
 gi|157784622|gb|ABV73123.1| hypothetical protein A1E_00875 [Rickettsia canadensis str. McKiel]
          Length = 323

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++        +++  +    + NI++    +NS + F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSL--------NMLQTSIEYTELNIASLEILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I + ++     +   L+ I+ ++  N  + I   E+  +++ RK  E    + A +
Sbjct: 73  QKELIKVRSVGN--SIDQNLKIILSRDYINFPVFI-GEEMTSSSSFRKFFETEEYLAATA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D+++ +  +I + +    K ISKEA   L A+L GD     NE+ KL  +  +   I
Sbjct: 130 CYHDDEVKIERIILDKVGKTNKIISKEANAYLKAHLKGDHNLVCNEINKLIYFVHDRKEI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAIYFSKKDYSNFLQELDILKKQNINEVLMIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     ETL  +       +
Sbjct: 250 -YIVLSKVKNGECLELAIKSLSPPIFYQYINDFTKIASSLSLAECLETLKLLQQAEVEYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|189183151|ref|YP_001936936.1| DNA polymerase III subunit delta [Orientia tsutsugamushi str.
           Ikeda]
 gi|189179922|dbj|BAG39702.1| hypothetical protein OTT_0244 [Orientia tsutsugamushi str. Ikeda]
          Length = 339

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 16/320 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79
                YG+D GLI     +  K  +     +D   L   + + I          +NS +L
Sbjct: 21  RAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEADFIFI----------LNSNNL 70

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           FS+++I+ I N      +   L++ +  N  N +I++  +E   ++T R+  E    + A
Sbjct: 71  FSQREIVKIYNTPG--NINAALKKALTFNNKNFLIML-GSEFSASSTTRQWFETQKYLAA 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           + CY ++   +  L+ + +    K+I+ EA         GD+    NE+ KL  YC +  
Sbjct: 128 LGCYTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLILYCHDCD 187

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I++Q V   I    +   + +     +G   N     +    + +P   +L   ++ + 
Sbjct: 188 TISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILRALIRYYI 247

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  I ++K+   +S E+ I+  +  I        Q   +    N V  TL+++      
Sbjct: 248 NL-YIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELS 306

Query: 320 ARKKKYLEKNIIFQTILYIA 339
            +   +   N+I    L I 
Sbjct: 307 VKTTHHYINNMIEVVFLKIT 326


>gi|88606763|ref|YP_505775.1| DNA polymerase III, delta subunit [Anaplasma phagocytophilum HZ]
 gi|88597826|gb|ABD43296.1| DNA polymerase III, delta subunit [Anaplasma phagocytophilum HZ]
          Length = 338

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 135/331 (40%), Gaps = 12/331 (3%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNIS--ITYHDPFSLVVLNALEIQKNISTFWNEINST 77
           ++   + YG+D       I+ + + I   +T  + FS++        K     + ++++ 
Sbjct: 17  AYGSVLLYGNDYS----RISHYSQKIINLLTCKEEFSVLRTEFSHASKEPEQLFVDLSTV 72

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
            +F +K ++++ +   +  +   L   +   N C+  +I+++ E+   ++LR        
Sbjct: 73  PMFHQKSLVILTDA--KDSLSPDLRTAVDNLNPCHCYVIVQAKELSSTSSLRTYYNNHVM 130

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
             AI+CY ++  ++ +++ E L   Q + + E   +L   L       + EL+KL  Y  
Sbjct: 131 YAAIACYKED--NINNIVAEFLAENQVTYNTETFALLCNLLQTSNACIQPELEKLLLYLG 188

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               ++ + +++         +++I  A   G + +    AD  L +K+ +  ++   ++
Sbjct: 189 TKRNLSIEDLQESFAADFDPALDDICVAIADGNLKSFNRAADALLQNKIAAVLIIRSSIK 248

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  LE + + K  S       ++  +  I       L++ +      +V+  L ++   
Sbjct: 249 YFMTLEYL-LRKVRSGCDINTAVKSVQPPIFFRLVAQLKKHVSTVPYQMVQLILRRLHEA 307

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
               +     ++++    +  +  +  +   
Sbjct: 308 EVQCKLSDSSQESMFRYLMYSLILSIQQIRR 338


>gi|157828118|ref|YP_001494360.1| DNA polymerase III subunit delta [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932819|ref|YP_001649608.1| DNA polymerase III subunit delta [Rickettsia rickettsii str. Iowa]
 gi|157800599|gb|ABV75852.1| DNA polymerase III subunit delta [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907906|gb|ABY72202.1| DNA polymerase III, delta subunit [Rickettsia rickettsii str. Iowa]
          Length = 324

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   E+  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEELTSSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKNNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|94496573|ref|ZP_01303149.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58]
 gi|94423933|gb|EAT08958.1| DNA polymerase III delta subunit [Sphingomonas sp. SKA58]
          Length = 346

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 130/344 (37%), Gaps = 11/344 (3%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            K +    +    +   F+ YG D+     L  + ++ +          + L+A  ++++
Sbjct: 9   EKALDAPGQGAAANTRFFLLYGPDEAGSQALAKRLERAMGPQAER----IDLDAPTLRED 64

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   +E  + S+F  K+ I +  +  +   L  L  ++      + +I  +  +K  + 
Sbjct: 65  PARLSDEAAAFSMFGDKRWIRVNGIGDD--CLPALNALLDAEAAGNPVIAVAGALKPTSK 122

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L K+A     +LA   Y  +      +       G   +S +  + ++   GGDR     
Sbjct: 123 LAKLALDHKGILACISYQPDGREAEQIAIGIARDGGLRLSSDLARRIVDLSGGDRALMAG 182

Query: 187 ELQKLSSY--CLEDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           E++KL  Y     D     T + +  +  D     +  ++NA + G +            
Sbjct: 183 EIEKLILYLDAAPDRPAEATGEALDALSADNPETEVGPLVNAVLGGDLRAMHRELTALAQ 242

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           +     A++   L +  LL  I    + S    E  + +  + +   ++ ++   +R+W+
Sbjct: 243 AGAAMAAVIRPLLTRAMLLATIRDAFDASGR-LEAAVDQAGRAVFWKEKGLVTRQVRLWD 301

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              +   + ++      +R  + L   ++   +L IA+ A +  
Sbjct: 302 APGIARVIQRLLAAERSSRGGRGLGDLMVRHELLAIARQAARER 345


>gi|91205921|ref|YP_538276.1| DNA polymerase III subunit delta [Rickettsia bellii RML369-C]
 gi|157826718|ref|YP_001495782.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389]
 gi|91069465|gb|ABE05187.1| DNA polymerase III delta subunit [Rickettsia bellii RML369-C]
 gi|157802022|gb|ABV78745.1| DNA polymerase III subunit delta [Rickettsia bellii OSU 85-389]
          Length = 330

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K         F+++  +      NIS+    +NS + F+
Sbjct: 21  KALLLYGPDKGYIDKICRHLVKK--------FNMLQTSIEYSDLNISSLEILLNSPNFFN 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I+ +     +   L+ I+  N  N  + I   +I  +++ RK  E   S+ +++
Sbjct: 73  QKELIRIKGVGN--SIDKNLKVILNDNYINFPVFI-GEDITSSSSFRKFFETEESLASLA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  ++ E L    K I +EA   L  +L GD     NE+ KL  +  +   +
Sbjct: 130 CYHDDEAKIEKIVLEKLAKCNKIIDREALIYLKNHLKGDHELVSNEINKLIYFVHDKQEV 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   +K+++    +    ++     Q    + +   D      +    ++   ++ +  L
Sbjct: 190 TLNDIKEVLSSEIIANGSDLAMYFSQKNYVSFLKELDILKKQNINEVLMIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    +  I+     I     N   +     N     +TL  +       +
Sbjct: 250 -YIVLAKVKNGERVDSAIKSLSPPIFYQYINDFTKIANSLNLAECLKTLRILQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|238650454|ref|YP_002916306.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic]
 gi|238624552|gb|ACR47258.1| DNA polymerase III subunit delta [Rickettsia peacockii str. Rustic]
          Length = 324

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   E+  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|225677392|ref|ZP_03788360.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590568|gb|EEH11827.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 338

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 139/340 (40%), Gaps = 16/340 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  +F++K       +    + +GSD       ++ + + I  +  D +S+ V++   + 
Sbjct: 7   KVKRFLEKPD-----ALRGVLIHGSDNS----RVDFYVQEIIASL-DEYSVQVMDFAIVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K+    ++E+ + S+F+ KK+I + N+S    +   L+ ++  N   H +++ + ++  N
Sbjct: 57  KSPGLLFSELANISMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMTATDLPHN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +  +   E       I+CY D+  +L D+I   L       + E    L +     ++  
Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241
            +EL+KL  Y  E   +    ++     +      ++++ +A     +   I ++D  + 
Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                  AL+      F  LE + +  +   +S +  I +    +   +    +  L+  
Sbjct: 235 QENFSPIALIRIISNYFLRLETVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341
             + +++ L K+       +K     K I  Q I +I  T
Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQQVICHITNT 333


>gi|15892161|ref|NP_359875.1| DNA polymerase III subunit delta [Rickettsia conorii str. Malish 7]
 gi|15619292|gb|AAL02776.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 324

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++      ++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVHSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   E+  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|51473388|ref|YP_067145.1| DNA polymerase III subunit delta [Rickettsia typhi str. Wilmington]
 gi|51459700|gb|AAU03663.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 321

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 121/305 (39%), Gaps = 14/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLF 80
              + YG DKG I ++  +  KN+++         +L+++E +  NI +F   +NS + F
Sbjct: 21  KALLLYGPDKGYIEKICTRLVKNLNM---------LLSSIEYEDLNILSFEILLNSHNFF 71

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            +K++I I ++     +   L+ I+  +  N  + I   ++  + +++K  E    + A+
Sbjct: 72  GQKELIKIRSIGN--SLDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAAV 128

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +CY D++  +  +I   L    K ISKEA   L  +L GD     +E+ KL  +  +   
Sbjct: 129 ACYHDDEAKIERIILAKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIYFVHDVHE 188

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT  HV ++I          +     +    N +   D      +    ++   ++ +  
Sbjct: 189 ITLNHVLEVISSEITANGSNLAIYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLN 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  I + K  +    E  I+     I     N         +     +TL  +       
Sbjct: 249 L-YIVLSKVKNGECLELAIKSLSPPIFYHNINDFINIAHALSLTECLKTLKLLQQAEVDY 307

Query: 321 RKKKY 325
           +    
Sbjct: 308 KLNPA 312


>gi|157964254|ref|YP_001499078.1| DNA polymerase III subunit delta [Rickettsia massiliae MTU5]
 gi|157844030|gb|ABV84531.1| DNA polymerase III, delta subunit [Rickettsia massiliae MTU5]
          Length = 324

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   E+  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEMISSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|34580809|ref|ZP_00142289.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262194|gb|EAA25698.1| unknown [Rickettsia sibirica 246]
          Length = 324

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 120/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     +++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVQSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   E+  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEEMTSSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T  +V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNNVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLSL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|157825377|ref|YP_001493097.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford]
 gi|157799335|gb|ABV74589.1| DNA polymerase III subunit delta [Rickettsia akari str. Hartford]
          Length = 326

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 121/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++++          +   ++  NIS+    +NS + F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSLNMLQ------TCIEYADL--NISSVEILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     + + L+ I+  +  N  + I   EI  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSIGN--SLDNNLKTILSSDYINFPVFI-GEEITASGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I + +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILDKVEKTNKVISKEAITYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V  +I         ++     +    N +   +      +    ++   ++ +  L
Sbjct: 190 TLNDVLKVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I ++K  + +  E  I+     I     N   +     +     ETL  +       +
Sbjct: 250 -YIVLLKVKNGVRLELAIKSLSPPIFYQYINDFTKIATSLSLTECLETLKLLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|15604063|ref|NP_220578.1| DNA polymerase III subunit delta [Rickettsia prowazekii str. Madrid
           E]
 gi|7388403|sp|Q9ZDX5|Y189_RICPR RecName: Full=Uncharacterized protein RP189
 gi|3860754|emb|CAA14655.1| unknown [Rickettsia prowazekii]
 gi|292571783|gb|ADE29698.1| DNA polymerase III, delta subunit [Rickettsia prowazekii Rp22]
          Length = 321

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 116/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     KN+++          +   ++  NI +    +NS + F 
Sbjct: 21  RALLLYGPDKGYIEKICTYLIKNLNMLQS------SIEYEDL--NILSLDILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I + ++     +   L+ I+  +  N  + I   ++  + +++K  E    +  ++
Sbjct: 73  QKELIKVRSIGN--SLDKNLKTILSSDYINFPVFI-GEDMNSSGSVKKFFETEEYLAVVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   L    K ISKEA   L  +L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKLAKTNKVISKEAITYLKTHLKGDHALICSEINKLIFFAHDVHEI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T  HV ++I          +     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNHVLEVISSEITANGSNLAIYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   + +   +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGECLEIAIKSLSPPIFYHNINDFTKIVHALSLTECIKTLKLLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|229586433|ref|YP_002844934.1| DNA polymerase III subunit delta [Rickettsia africae ESF-5]
 gi|228021483|gb|ACP53191.1| DNA polymerase III, delta subunit [Rickettsia africae ESF-5]
          Length = 324

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 118/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     +++++          +   ++  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVQSLNMLQ------TSIEYADL--NISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I    I  + ++RK  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDQNLKTILNSDYINFPVFI-GEAITSSGSIRKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVAKTNKVISKEAIIYLKAHLKGDHDLICSEINKLIYFVHDAREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   D      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELDILKKQNINEVLIIRALIRHYLSL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPPIFYQYINDFTKIANGLSLTECLKTLKVLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|67459470|ref|YP_247094.1| DNA polymerase III subunit delta [Rickettsia felis URRWXCal2]
 gi|67005003|gb|AAY61929.1| DNA polymerase III, delta subunit [Rickettsia felis URRWXCal2]
          Length = 321

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 117/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++++          +   E+  NIS+    +NS + F 
Sbjct: 21  RALLLYGPDKGYIEKIYKHLVKSLNMLQ------TSIEYSEL--NISSLEILLNSPNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   EI  + + +K  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  +   I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFIHDRREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V  +I         ++     +    N +   +      +    ++   ++ +  L
Sbjct: 190 TLNDVLKVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +  S E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKIKNGESLELAIKSLSPPIFYQYINDFTKIANSLSLTECLQTLKLLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|239948156|ref|ZP_04699909.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922432|gb|EER22456.1| DNA polymerase III, delta subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 324

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 119/304 (39%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG DKG I ++     K++        +++  +   +  NIS+    +NS++ F 
Sbjct: 21  RALLLYGPDKGYIEKICKHLVKSL--------NMLQTSIEYVDLNISSLEILLNSSNFFG 72

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++I I ++     +   L+ I+  +  N  + I   EI  + + +K  E    + A++
Sbjct: 73  QKELIKIRSVGN--SIDKNLKTILSSDYINFPVFI-GEEITSSGSFKKFFETEEYLAAVA 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           CY D++  +  +I   +    K ISKEA   L A+L GD     +E+ KL  +  ++  I
Sbjct: 130 CYHDDEAKIERIILGKVEKTNKIISKEAITYLKAHLKGDHDLICSEINKLIYFVHDEREI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   V ++I         ++     +    N +   +      +    ++   ++ +  L
Sbjct: 190 TLNDVLEVISSEITANGSDLAMYFSKKDYSNFLQELEILKKQNINEVLIIRALIRHYLNL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             I + K  +    E  I+     I     N   +     +     +TL  +       +
Sbjct: 250 -YIVLSKVKNGERLELAIKSLSPAIFYQYINDFTKIAGSLSLTECLKTLKLLQQAEVDYK 308

Query: 322 KKKY 325
               
Sbjct: 309 LNPA 312


>gi|114798351|ref|YP_762230.1| DNA polymerase III subunit delta [Hyphomonas neptunium ATCC 15444]
 gi|114738525|gb|ABI76650.1| DNA polymerase III, delta subunit [Hyphomonas neptunium ATCC 15444]
          Length = 343

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 110/341 (32%), Gaps = 13/341 (3%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           +  F ++    ++      + +  D+GL F+                  + VL+   I+K
Sbjct: 8   AEGFARRPDPEVW----AVLAFSEDEGLAFDAGQALIAGWGGKPG--MDVTVLDDDAIKK 61

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN---HIIIIKSNEIK 122
             +  ++ + + SL    + + +     +   L                  +II++  + 
Sbjct: 62  EPALLFDALEAVSLLGDSRAVRVRTSGDKIAALLAEAIAAGDKDPRRFAAKLIIEAGSLP 121

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             + LR  AE       +  + +    +   ++ +LL     I   A    + +L G R 
Sbjct: 122 GKSKLRAAAEGAKRAACLQFFAEEDTDVASRVKTALLAEGAVIDPPALDAFVGDLPGHRA 181

Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
            + +E++KL+ Y       +  + V+ +        I   +NA + G    A    D   
Sbjct: 182 LANSEIEKLALYARGLGRPLNLEDVRALSATDVKQAISGAVNAALDGHPGAAQTALDKLS 241

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            +     ++L     +   +   H      + +  K        + P      +  L  W
Sbjct: 242 ENGTSGISILRSLQMEVLRMLSAHEKIAGGDGNPGKY---LRPPVWPSDWPAFRVRLGKW 298

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
               +   + +I       +    +   ++   I  +A+ A
Sbjct: 299 PARRLMRVMERIHDAERQTKLAGPIGDPVVRLLINDLAKAA 339


>gi|84687978|ref|ZP_01015842.1| hypothetical protein 1099457000203_RB2654_15544 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664010|gb|EAQ10510.1| hypothetical protein RB2654_15544 [Rhodobacterales bacterium
           HTCC2654]
          Length = 340

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 124/347 (35%), Gaps = 20/347 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+++   K   +   +    + YG+D   +  +  +  K  +     +   L  + A ++
Sbjct: 7   EANRHFAKPAPDTTGT----LIYGTDAMRVALKRQDLLKNLLGEGAEEEMRLTRMLAGDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEI 121
           + + +   + I +   F   + + +E+ +     K+   L++       +  +++    +
Sbjct: 63  RADPAALSDAIKAQGFFPGPRAVFVEDATDVHGDKITQALDDW---QPGDAHVVVTGGNL 119

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG- 179
           K    LRK  EK  S  AI  Y D      D I++ L       I  EA + L A     
Sbjct: 120 KPTGKLRKYFEKHPSAFAIGIYDDPMSR--DEIQDELRKAGLNQIDPEAMRDLEALARSL 177

Query: 180 DRIASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           D    R  ++KLS Y L D  L+T   V      +    ++++++AT +G+      L  
Sbjct: 178 DPGDFRQTVEKLSLYKLGDPSLLTPDDVDACAPASTEAVLDDLLHATAEGRAGELGPLLT 237

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A  +    L       F+ L       E  N    +        +    R+ +    
Sbjct: 238 RLEAQGIAPTRLAIATTNHFRTLHMAASDPEGPNKGIFR----ARPPVHFKSRDRMTRQA 293

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACK 344
             W    +   L  I       R      +  +I +T++ +A  A +
Sbjct: 294 SRWGAAKLETALDMIIEADLTLRSTSKAPQMALIERTLIRLAFMAAR 340


>gi|269958414|ref|YP_003328201.1| DNA polymerase III, delta subunit [Anaplasma centrale str. Israel]
 gi|269848243|gb|ACZ48887.1| DNA polymerase III, delta subunit [Anaplasma centrale str. Israel]
          Length = 350

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNI--SITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +   + +GSD G     ++ + + I   I  +  F +  +  L+  ++       + +  
Sbjct: 18  YGSVLLHGSDYG----RMSMYTQKILDRINRNSEFVIHKMEFLKANRDPEQLLVSLMTVP 73

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           +FSKK +IL+ +   +  +   L   I   N+ +  +II++ E+   +TL+         
Sbjct: 74  MFSKKSLILLTDA--KDTLSADLRAAIEGMNMQHCYMIIQARELSGTSTLKGYYSSHKKF 131

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A+ CY +    +  ++ + L     S      ++L   L       + EL+KL  Y  E
Sbjct: 132 AAVGCYKEE--DVSFIVADFLAKHGISYRHSTFKLLCTKLKNGSACLQPELEKLLLYLGE 189

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +  + V+  +       ++++  A   G + +A+   D  + +++    ++   L+ 
Sbjct: 190 QKSLAAEDVQKSLSTDVDPVLDDLCVAITDGNLGDALKHVDTLMQNRLSPILVIRSSLKY 249

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F  LE + +    S  S +  ++  +  +       L+ S    +   V+  L ++    
Sbjct: 250 FMQLEYL-LRTTQSQASIDSALKALQPPVFFRLIPKLKRSAESVSYRTVQVILRRLLEAE 308

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNNN 347
              +     ++ +    +  +     +  +
Sbjct: 309 IQCKLSDTSQEVVFKYLMCSLTAFVKRAKS 338


>gi|254292381|ref|YP_003058404.1| DNA polymerase III subunit delta [Hirschia baltica ATCC 49814]
 gi|254040912|gb|ACT57707.1| DNA polymerase III, delta subunit [Hirschia baltica ATCC 49814]
          Length = 334

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 127/331 (38%), Gaps = 19/331 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           ++  F+Q+    +     V + +G D G++ +      +      +    +V L+  E++
Sbjct: 7   KALNFVQRPKAGI----NVVLAFGEDLGVVSDAAQTLVQKWRKVENSELDIVRLHEDELK 62

Query: 65  KNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEI 121
           K+       +++ SL   K+I+ +   N S  K+++  +++I   K    + +I+++ E+
Sbjct: 63  KDPGLLTEHLSAVSLLGIKQILRVRLSNESIAKQLIAIVDQIATGKLYPENFLILEAGEL 122

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           KK++ LR           +  + D+ +   + I   L      I + A +   A L GDR
Sbjct: 123 KKSSKLRTSFSTSPDTACLQFFADSDVETSEYIRIKLSDQNIQIDELALEQFAAELPGDR 182

Query: 182 IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             +  E++KLS Y  +    I    +K I         +   +A + G I  A    D F
Sbjct: 183 RLANAEIEKLSLYAFDLGRSIQPDDIKAICSTEQPRGADNAADAALAGDIDEANKSLDRF 242

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L +   + + L      ++LL  I               +     +    R    + L+ 
Sbjct: 243 LDAGGSAISALRTL--HYRLLRVIDAQSGA---------RFLRPPVFDRDRPAFNKMLKD 291

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNII 331
           W+   +   L  +       ++     + I+
Sbjct: 292 WDAARLNRALSTLYAAEKTCKQGGIPAEAIL 322


>gi|162447751|ref|YP_001620883.1| DNA polymerase III subunit delta [Acholeplasma laidlawii PG-8A]
 gi|161985858|gb|ABX81507.1| DNA polymerase III, delta subunit [Acholeplasma laidlawii PG-8A]
          Length = 315

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 116/263 (44%), Gaps = 17/263 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G    LI E I  ++    +   D F++V L+A  ++  I     E+ + S FS  
Sbjct: 5   YLLVGQSAFLINEQIKTYQDKFKL---DQFNIVKLDA--LETEIEVINQELQTVSFFSDL 59

Query: 84  KIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           K+++IE+L      + KVL    + +     + ++I+   E+ K++ L    EK+T +  
Sbjct: 60  KMVVIEHLDGLTRYDDKVLSTFYKYLESPSSDIVLILTITELPKDHNLGSYLEKYTFIET 119

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I         L+  I ES       I  ++ Q+++     D  +   E+ K+  Y  ++ 
Sbjct: 120 IQSL--EGETLISYIRESFHKEGYQIEDKSIQLIIERTQNDLFSIHQEISKIKMYAYDEK 177

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           ++  + V  ++       I     A ++G I + + + D  + +KMP+  + +       
Sbjct: 178 IVFVEDVDLLVTRNLEDNIFSFSTAYLKGNIKSYMQIYDDLVTNKMPTITIFN------H 231

Query: 260 LLEKIHIIKECSNISFEKIIQKT 282
           L   +H+I +  ++  + + QKT
Sbjct: 232 LFNTMHLIMQTKDLMEQGLNQKT 254


>gi|222475558|ref|YP_002563975.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma
           marginale str. Florida]
 gi|222419696|gb|ACM49719.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma
           marginale str. Florida]
          Length = 380

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 127/332 (38%), Gaps = 12/332 (3%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73
           N   S+   + +GSD       ++ + + I    +    F +  +  L   ++       
Sbjct: 44  NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLRANRDPEQLLVS 99

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           + +  +F +K ++L+ +   +  +   L+ I+   +  +  +II++ E+   +TL+    
Sbjct: 100 LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 157

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 A+ CY +    +  ++ + L   + S      ++L   L       + EL+KL 
Sbjct: 158 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 215

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   ++ + V+  +       +++I  A   G + + +  AD  +  ++     + 
Sbjct: 216 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 275

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L+ F  LE + +    + +S +  ++  +  +       L+ +    +   ++  L +
Sbjct: 276 SSLKYFMQLEYL-LRAAQNQVSIDNALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 334

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           +       +     ++ +    +  +A    +
Sbjct: 335 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 366


>gi|254450348|ref|ZP_05063785.1| DNA polymerase III delta subunit [Octadecabacter antarcticus 238]
 gi|198264754|gb|EDY89024.1| DNA polymerase III delta subunit [Octadecabacter antarcticus 238]
          Length = 342

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 131/351 (37%), Gaps = 26/351 (7%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64
           ++ + +K   N        + YG D   +  +  +  K  +     +   L  ++  +++
Sbjct: 8   ANSYFRKPDPNGAG----ILIYGGDAMRVALKRQDVIKTLVGPNGEEEMRLTRMSGADLR 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           K+ +   + I +   F   +++ +E ++    K ++  L++ +     +  +++ + ++ 
Sbjct: 64  KDPALLGDAIKAQGFFPGPRVVFVEEVTDVAAKAIIPALKDWVA---GDAQVVVTAGQLA 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLAN----L 177
             ++LRK+ E   S  A   Y D      D IE +L +   + I ++A  ++ A      
Sbjct: 121 AKSSLRKLFESHPSAYAAGIYDDPP--TRDEIETALRVAGLNNIDRDAMDLIAALSREMA 178

Query: 178 GGDRIASRNELQKLSSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
            GD    R  ++KL  Y   E   +T   V+     ++   +++I+NA    K      +
Sbjct: 179 PGD---LRQTIEKLGLYMAGETAAVTVSDVEACAPLSNEAALDDILNAVADLKATEIGPI 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                A      AL  G ++ F+ L    +  +         I +    +   +R+ +  
Sbjct: 236 LSRLYAQGTQPVALCIGAMRHFRQLHV--VASDPGGPLAG--IGRLRPPVFGPRRDRIVR 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACKNN 346
               W +  +   L  I       R      ++ ++ +  + +A       
Sbjct: 292 QASTWGRFRLERALGTITDADLTLRSSSTAPDRALVERMFIRLAMLGRSRG 342


>gi|42520244|ref|NP_966159.1| hypothetical protein WD0364 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409982|gb|AAS14093.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 330

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 135/334 (40%), Gaps = 16/334 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  KF++K       +    + +GSD   +   + +   N+       +S+ V++   + 
Sbjct: 7   KVKKFLEKPD-----ALRGVLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K+ S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N   H +++ +N++  N
Sbjct: 57  KSPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMVANDLPYN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +  +   E       I+CY D+  +L D+I   L       + E    L +     ++  
Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241
            +EL+KL  Y  E   +    ++     +      ++++ +A     +   I ++D  + 
Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                  AL+      F  LE + +  +   +S +  I +    +   +    +  L+  
Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
             + +++ L K+       +K     K I    +
Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327


>gi|255004676|ref|ZP_05279477.1| Putative DNA polymerase III delta subunit (holA) [Anaplasma
           marginale str. Virginia]
          Length = 349

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 128/332 (38%), Gaps = 12/332 (3%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73
           N   S+   + +GSD       ++ + + I    +    F +  +  L+  ++       
Sbjct: 13  NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLKANRDPEQLLVS 68

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           + +  +F +K ++L+ +   +  +   L+ I+   +  +  +II++ E+   +TL+    
Sbjct: 69  LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 126

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 A+ CY +    +  ++ + L   + S      ++L   L       + EL+KL 
Sbjct: 127 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 184

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   ++ + V+  +       +++I  A   G + + +  AD  +  ++     + 
Sbjct: 185 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 244

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L+ F  LE + +    + +S +  ++  +  +       L+ +    +   ++  L +
Sbjct: 245 SSLKYFMQLEYL-LRAAQNQVSIDSALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 303

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           +       +     ++ +    +  +A    +
Sbjct: 304 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 335


>gi|56417193|ref|YP_154267.1| hypothetical protein AM1185 [Anaplasma marginale str. St. Maries]
 gi|56388425|gb|AAV87012.1| hypothetical protein AM1185 [Anaplasma marginale str. St. Maries]
          Length = 349

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 128/332 (38%), Gaps = 12/332 (3%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALEIQKNISTFWNE 73
           N   S+   + +GSD       ++ + + I    +    F +  +  L+  ++       
Sbjct: 13  NSPESYGSVLLHGSDYS----RMSMYTQKILDRINRNGEFVIHKMEFLKANRDPEQLLVS 68

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           + +  +F +K ++L+ +   +  +   L+ I+   +  +  +II++ E+   +TL+    
Sbjct: 69  LMTVPMFGQKPLVLLTDA--KDMLSADLKTIMAGIDTQHCYVIIQARELSGASTLKSYYN 126

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 A+ CY +    +  ++ + L   + S      ++L   L       + EL+KL 
Sbjct: 127 NHKIFAAVGCYKEE--DVGFIVADFLAKHEISYEHSTFKLLCTTLKHSAAGIQPELEKLL 184

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   ++ + V+  +       +++I  A   G + + +  AD  +  ++     + 
Sbjct: 185 LYLGEKKSLSTEDVQKSLSTDVDPALDDICVAIADGNLEDVLKCADTLMQHRISPILAIR 244

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L+ F  LE + +    + +S +  ++  +  +       L+ +    +   ++  L +
Sbjct: 245 SSLKYFMQLEYL-LRAAQNQVSIDNALKALQPPVFFRLIPKLKRNAASVSYRTLQVILRR 303

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           +       +     ++ +    +  +A    +
Sbjct: 304 LLEAEMQCKLSDATQEVVFKYLMCSLAAFVKR 335


>gi|160893074|ref|ZP_02073862.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50]
 gi|156865157|gb|EDO58588.1| hypothetical protein CLOL250_00619 [Clostridium sp. L2-50]
          Length = 337

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 131/320 (40%), Gaps = 19/320 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            V++ YG +  L+ +  ++    ++    +     F+    + +EI            + 
Sbjct: 27  PVYLLYGDETYLVNQYRDKLLSAVTDRDDNMNFAKFAGEKTDPMEIIGFCE-------TM 79

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+ ++++L E     KK  +   E I +     +I+   +E+ K N L K  +K    
Sbjct: 80  PFFADRRVVLAEGTGLFKKSCEEFAERIKELPDTSLILFVESEVDKRNKLYKTVDKLGEA 139

Query: 138 LAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           L   C+   N+  L   ++       K I+ +A + L+ + G D  + +NE+ KL SY +
Sbjct: 140 L---CFETPNEKTLAVWVKGMFKGEGKQITDDAIRSLIEHTGSDMNSIKNEIDKLISYTV 196

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +   +T   V+++       +I E+I+A  + +   AI L    L ++ P+  +L    +
Sbjct: 197 DREAVTASDVENLCVGNSEGHIFEMIDAISRKQQDRAIHLYHELLENREPAMRILFLIAR 256

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++ LL K  +     N ++             +K+    E  R +++  +++ +      
Sbjct: 257 QYDLLLKTKMCL-AENKNYADTASVLGVPSWSVKK--YAEQCRNYSEQELKKIMEACQDT 313

Query: 317 IHLARKKKYLEKNIIFQTIL 336
            +  +  +     +  + +L
Sbjct: 314 DYKLKTSQA-SDVVAVEVLL 332


>gi|99035034|ref|ZP_01314830.1| hypothetical protein Wendoof_01000344 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 330

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 135/334 (40%), Gaps = 16/334 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  KF++K       +    + +GSD   +   + +   N+       +S+ V++   + 
Sbjct: 7   KVKKFLEKPD-----ALRGVLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K+ S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N   H +++ +N++  N
Sbjct: 57  KSPSLLFSELANASMFTSKKLIKLINVSG--GISKELKNVLDYNASGHYVMMVANDLPYN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +  +   E       I+CY D+  +L D+I   L       + E    L +     ++  
Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241
            +EL+KL  Y  E   +    ++     +      ++++ +A     +   I ++D  + 
Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALIS 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                  AL+      F  LE + +  +   +S +  I +    +   +    +  L+  
Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
             + +++ L K+       +K     K I    +
Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327


>gi|254439606|ref|ZP_05053100.1| hypothetical protein OA307_4476 [Octadecabacter antarcticus 307]
 gi|198255052|gb|EDY79366.1| hypothetical protein OA307_4476 [Octadecabacter antarcticus 307]
          Length = 342

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 123/333 (36%), Gaps = 22/333 (6%)

Query: 24  FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            + YG D   +  +  +  K  +     +   L  ++  +++K+ +   + I +   F  
Sbjct: 22  ILIYGGDPMRVALKRQDVIKMLVGPNGEEEMRLTRMSGADLRKDPALLGDAIKAQGFFPG 81

Query: 83  KKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            +++ +E ++    K ++  L++    N  +  I++ + ++   ++LRK+ E   S  A 
Sbjct: 82  PRVVFVEEVTDVAAKAIIPALKDW---NAGDAQIVVTAGQLAAKSSLRKLFESHPSAYAA 138

Query: 141 SCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLAN----LGGDRIASRNELQKLSSYC 195
             Y D      D IE +L      +I ++A  ++ A       GD    R  ++KL  Y 
Sbjct: 139 GIYDDPP--TRDEIETALRDANINNIDRDAMDLITALSREMAPGD---LRQTIEKLGLYM 193

Query: 196 LEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   +T   V+     ++   +++I+N     K      +     A      AL  G 
Sbjct: 194 TGETAGVTITDVEACAPLSNEAGLDDILNVVADLKATEIGPILSRLYAQGTQPVALCIGA 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           +  F+ L    +  +    S    I +    +   +R+ +      W +  +   L  I 
Sbjct: 254 MHHFRQLHI--VASDPGGPSAG--IGRLRPPVFGPRRDRIVRQASTWGRIKLERALGTIT 309

Query: 315 HRIHLARK-KKYLEKNIIFQTILYIAQTACKNN 346
                 R      ++ ++ +  + +A       
Sbjct: 310 DADLTLRSANTAPDRALVERMFIRLAMLGRSRG 342


>gi|58698431|ref|ZP_00373341.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630216|ref|YP_002727007.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi]
 gi|58535054|gb|EAL59143.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592197|gb|ACN95216.1| DNA polymerase III, delta subunit [Wolbachia sp. wRi]
          Length = 330

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 134/334 (40%), Gaps = 16/334 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  +F++K            + +GSD   +   + +   N+       +S+ V++   + 
Sbjct: 7   KVKRFLEKPDALSG-----VLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K  S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N+  H +++ ++++  N
Sbjct: 57  KLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGHYVMMVASDLPYN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +  +   E       I+CY D+  +L D+I   L       + E    L +     ++  
Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFFL- 241
            +EL+KL  Y  E   +    ++     +      ++++ +A     +   I ++D  + 
Sbjct: 175 CSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMLRFIRISDALIS 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                  AL+      F  LE + +  +   +S +  I +    +   +    +  L+  
Sbjct: 235 QENFSPIALIRIISNYFLRLENVLLSVQ-GGMSEQAAIDQLSPPLFFKQLQSFKSHLKSL 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
             + +++ L K+       +K     K I    +
Sbjct: 294 QLSELKKILEKLISLEVTCKKTDLDHKMIFQHAL 327


>gi|190570628|ref|YP_001974986.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213019121|ref|ZP_03334928.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190356900|emb|CAQ54278.1| Putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995230|gb|EEB55871.1| putative DNA polymerase III, delta subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 339

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 141/332 (42%), Gaps = 17/332 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  KF++K       +    + +GSD   +    + F + I    +  +S+ V++   + 
Sbjct: 7   KVKKFLEKPD-----TLSGVLIHGSDNSKV----DIFVQEIIANLN-EYSVQVMDFAVVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K+    ++E+ + S+F+KK+++ + N+S    +   L  I+  NI +H I++ +N++  +
Sbjct: 57  KSPGLLFSELANISMFTKKRLVKLINVSG--SISKELRNILDHNIGDHYIVMIANDLPYS 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +T +   E       I+CY D+  +L D+I   L       + E    L +     ++  
Sbjct: 115 STTKSYMESSKIFGVITCYKDSGSNLCDIISSYLKQNDIECTSEIIYHLQSYFNHSKLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVL--YIEEIINATIQGKIYNAIMLADFF-L 241
            +EL+KL  Y  +   +    +      +      ++ + +A +   +   I ++D   L
Sbjct: 175 YSELEKLVLYLGKRKDLKLADIDLCFSTSGNDYVTLDNLCSAIVSKDMGQFIKISDVLIL 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                  AL+      F  LE + ++ + + ++ +  I +    +   +    +  L+  
Sbjct: 235 QENFSPIALIRIISNYFLRLESVLLLIQ-NGMNEQAAIDQLSPPLFFKQLQSFKSHLKSL 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333
             + +++ L  +       ++   L+  +IFQ
Sbjct: 294 QLSELKKILENLMSLEVTCKRTD-LDHKMIFQ 324


>gi|260432315|ref|ZP_05786286.1| DNA polymerase III, delta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416143|gb|EEX09402.1| DNA polymerase III, delta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 342

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 123/351 (35%), Gaps = 25/351 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  K   +        + YG+D   +  +        +  T  +   L  +   ++
Sbjct: 7   EADGYFSKPDPDKTG----LLIYGADAMRVALKRQQVLAALLGPTAEEEMRLTRMPGADL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           + + +   + + +   F   + + +E+ +    V   +   +      +  II+ + ++K
Sbjct: 63  RGDRAMLLDAVKAVGFFPGPRAVFVEDATD--SVAPAILTALEDWAPGDAQIIVTAGQLK 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQIL----LANL 177
            ++ LRK  E   +  A+  Y D        IE +L     + I +++  +L        
Sbjct: 121 ASSKLRKAFEAHRNAYAVGIYDDPPSRAE--IERALAQAGLTDIPRDSMAMLGDLAAELS 178

Query: 178 GGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
            GD   +   L+KL+ Y   D   +T + ++     ++   +++++N   +G+      L
Sbjct: 179 PGDFAQT---LEKLALYKRGDGTALTVEDIEACAPQSNEAALDDVLNVVAEGRAPEIGPL 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                A       L  G  + F+ L               + I K    I   +R+ +  
Sbjct: 236 IRRLQAQGTNPVTLCIGATRHFRTL----YACASDPGGAAQGIGKLRPPIYGKRRDRILR 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
             + W    ++  L  +       R   +      ++ + ++ IA  A   
Sbjct: 292 QAQAWGAQKLQTALTVLTDTDLSLRSAGQTAPAMALVERALIRIAMLARSR 342


>gi|58584436|ref|YP_198009.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58418752|gb|AAW70767.1| DNA polymerase III delta subunit [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 336

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 144/338 (42%), Gaps = 17/338 (5%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  KF++K      LS    + +G+D   +     +   ++S      +S+ +++   + 
Sbjct: 7   KVKKFLEKP---DILSG--VLIHGNDNSKVDFFTQEIVASLSE-----YSVQMMDFAMVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K+    ++E+ + S+F+ KK+I + N++    +   L+ ++  N   H +I+ + ++  N
Sbjct: 57  KSPGLLFSELANISMFTSKKLIKLINVTG--NISKELKNVLDYNAGGHYVIMIATDLSYN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +T++   E   +   I+CY ++  +L D+I   L       + E    L +      +  
Sbjct: 115 STIKSYIESSKTFGVIACYKNSGSNLYDIISSYLKRNDIKYTNEIIYHLQSYFNYSNLPI 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYI--EEIINATIQGKIYNAIMLADFF-L 241
            +EL+KL  Y  E   +    ++  +      Y+  + + +A     + N I ++D   L
Sbjct: 175 HSELEKLVLYLGERKDLKPADIELCLSTFSNDYVTPDNLCSAIANKDMANFIKISDTLIL 234

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                   L+      F  LEK+ +  +   ++ +  I +    +   +    +  L+I+
Sbjct: 235 QENFSPIGLIRIISNYFLSLEKVLLSIQ-GGMNEQVAIDQLNPPLFFKQLQSFKSHLKIF 293

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             + +++ L  +       +K   L+  +IFQ  L +A
Sbjct: 294 QLSELKKILESLISLEITCKKTD-LDHRMIFQHALQMA 330


>gi|254456431|ref|ZP_05069860.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083433|gb|EDZ60859.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 330

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 133/319 (41%), Gaps = 10/319 (3%)

Query: 18  FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
           F  + + +FYG ++GL  +  N   KN         ++      EI +N + F   +   
Sbjct: 13  FDQNKLILFYGKNEGLKNDSTNNLLKNKE-------NISKYEEKEILENTNIFLENVFCK 65

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           SLF  +KII+I+ ++ +   +   EEI  K I +  III ++ ++K + LR   EK    
Sbjct: 66  SLFENEKIIIIKRVTDKILKII--EEIEEKKIEDLKIIINADILEKKSKLRSFFEKSREH 123

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + ++ YPD    L  L        + SIS     +++    GDR    NEL K+  +   
Sbjct: 124 VCVAFYPDTNQVLSKLTYNFFNQKKISISPANINLIVNKCNGDRETLFNELDKIEYFSKS 183

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE+ +  +        I ++I+  +       I + +           +   FL K
Sbjct: 184 GKKITEESIIKLTNLIENHSISDLIDNCLAKNKKKIINILNENNFGNEDCIIITRTFLLK 243

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + + K+      SN + +  I   +  I    + I ++ +  W    +++ ++K++   
Sbjct: 244 SKKILKLCSEF-KSNKNIDLTISSAKPPIFWKDKEITKQQIYKWTPENIKKLIYKLNEIE 302

Query: 318 HLARKKKYLEKNIIFQTIL 336
            L +K      N+I   IL
Sbjct: 303 LLIKKNINNSINLITDFIL 321


>gi|262277796|ref|ZP_06055589.1| putative DNA-directed DNA polymerase III [alpha proteobacterium
           HIMB114]
 gi|262224899|gb|EEY75358.1| putative DNA-directed DNA polymerase III [alpha proteobacterium
           HIMB114]
          Length = 334

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 11/324 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           + LF  + + + YG +  L  E+     K   I   + F    +   E+ K+I    N +
Sbjct: 11  EKLFSDYKINLIYGENFHLKTEI---LSKLTQIFKENEFKTKFIKEDELLKDIEILDNYL 67

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           N  SLF +K+I++I+  S      D L + I  +  +  +I+ ++ + K ++LR  AEK 
Sbjct: 68  NQDSLFGEKEILIIQEAS------DKLLDYINFSEIDKKLILVTDNLTKKSSLRNKAEKE 121

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             +  I+CY D++  L  L+   L      +  EA   L      +R    + L+KL   
Sbjct: 122 KIISCIACYEDDEKTLQSLLRNGLTKLDIKVPYEAIDQLFNINKLNRNDINSGLEKLELI 181

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +D  +  +    +   T      EI NA + G       +   F    +  + +L   
Sbjct: 182 T-KDKKLDSESFSSLFNTTSSFDAFEISNALLSGDKKALNKILSSFYHFSINFNEVLGPL 240

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
             K   L  I+   E        ++   +  I   ++NI+Q  L  WNKN +   L KI+
Sbjct: 241 KYKINKLIDIYEYNENETK-ITVLVDTYKPPIFWKEKNIIQTQLSKWNKNELDTLLDKIN 299

Query: 315 HRIHLARKKKYLEKNIIFQTILYI 338
               L +    + + I  + +L I
Sbjct: 300 EIEILCKLNYEIAETIFNKFLLDI 323


>gi|255263399|ref|ZP_05342741.1| DNA polymerase III, delta subunit [Thalassiobium sp. R2A62]
 gi|255105734|gb|EET48408.1| DNA polymerase III, delta subunit [Thalassiobium sp. R2A62]
          Length = 340

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 122/337 (36%), Gaps = 16/337 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           K    S    + +G+D   +           I     +   L  ++  E++K+ +   + 
Sbjct: 13  KKPDPSKTGLLIFGADPMRVAGRRQEVIAALIGPQGEEEMRLTRMSGSELRKDPAMLNDA 72

Query: 74  INSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           I + S F   ++  +E+++    K +   L++       +  II+ + ++   +TLRK+ 
Sbjct: 73  IKAQSFFPGPRVAFVEDVTDAMSKFIATALQDW---QDGDAQIIVTAGQLTAKSTLRKMF 129

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQ 189
           E  ++  A+  Y D        +E +L         ++A + LLA     D    R  ++
Sbjct: 130 EGHSNAFAVGLYDDPPSREE--VEATLRDAGVKTDDRDAMEALLALSRALDPGDFRQTVE 187

Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           KL  Y   D   ++   ++     +    +++++N   + +      +    +A      
Sbjct: 188 KLGLYKRGDDTPVSVTDIEACAPTSIEADLDDVLNIVAEARAVEIGPIMAKLVAQGTNPV 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L  G  + F+ L       +    S    +Q+    +  ++R+ +      W    +  
Sbjct: 248 TLCIGATRHFRTLHT--AASDPGGPSAG--VQRLRPPVFGLRRDRVIRQASKWGLARLET 303

Query: 309 TLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACK 344
            L  +       R      +  +I +  + +A  A +
Sbjct: 304 ALTVLTDTDLQLRSSSRAPQMALIERAFIRLAMLAAR 340


>gi|148555759|ref|YP_001263341.1| DNA polymerase III subunit delta [Sphingomonas wittichii RW1]
 gi|148500949|gb|ABQ69203.1| DNA polymerase III, delta subunit [Sphingomonas wittichii RW1]
          Length = 340

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 125/342 (36%), Gaps = 13/342 (3%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           IQ++      +  + + YG D+     L  +  K +          + L   +++++ + 
Sbjct: 8   IQRALDRPDPAVRLILLYGPDESGSRALAARIDKAMGAEAER----IDLAGAQLKEDPAR 63

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             +E  S SLF   + I ++    E  ++D  + ++      + +++ +  ++K+  L K
Sbjct: 64  LADEAASISLFGGARHIRVDPAGDE--IIDAAQALLEAASGGNPVVVIAGNLRKDAKLVK 121

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           +A      LA + Y         +  +        +   A Q ++A    DR     EL+
Sbjct: 122 LALASPMALAFASYLPEGRAADQVAVDIARELGLRLDPRAAQAIVAATNADRALIARELE 181

Query: 190 KLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           KL+ +      +         + I        +  I++A + G+   A   A+  L    
Sbjct: 182 KLALFLDASPDDPKPADAAAFETIGAVNDESDLSAIVDAVMGGRPEQA--AAELALIGAP 239

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
            +   +   L++   +  +      +  S + ++    K I    + ++   L+ W+ + 
Sbjct: 240 EAIGAVRAVLRRLAQIAPLRAEV-AAGQSVDAVMAGAGKAIFWKDQKVVAGLLQRWSPDR 298

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           +     ++       ++       +I + +L IA+ A     
Sbjct: 299 IATATTRLAALERAYKRSGSPGMILIGEELLTIARVAASARR 340


>gi|254464990|ref|ZP_05078401.1| DNA polymerase III, delta [Rhodobacterales bacterium Y4I]
 gi|206685898|gb|EDZ46380.1| DNA polymerase III, delta [Rhodobacterales bacterium Y4I]
          Length = 342

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 117/350 (33%), Gaps = 23/350 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  K            + YG+D   +  +        +     +   L  L   ++
Sbjct: 7   EADGYFAKPDPGKTG----ILIYGADAMRVSLKRQQVLAALLGPGAEEEMRLSRLPGADL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   + + +E  + +      +  +      +  I++ + ++K 
Sbjct: 63  RKDPAQLLDAVKAVGFFPGVRAVFVEG-ANDTATPAIIAALEEWQPGDAQIVVTAGQLKA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
            + LRK  E  ++  A   Y D        IE  L       +  ++   L         
Sbjct: 122 TSKLRKAFEGHSNAYAAGIYDDPPSRAE--IERILGEAGIRDVPGDSMSALTDIANDTGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   SR  ++KL+ Y   D   ++ + +  +   +    +++++N   +G+      L 
Sbjct: 180 GD--FSRM-IEKLALYKHGDSSPLSLEDIGAVAPQSTEAALDDVLNVVAEGRSAEIGPLI 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    +  L  G  + F+ L         +     + I +    +   +R+ +   
Sbjct: 237 RRLQAQGTNAVTLCIGATRHFRTL----YTIAGAPGGPAQGISQLRPPLYGKRRDRMLRQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
            + W  N +   L  I       R   +      ++ + ++ +A      
Sbjct: 293 AQNWGANRLETALTIITDTDLALRSAGQTAPALALMERALIRLAMLGRAR 342


>gi|259417127|ref|ZP_05741046.1| DNA polymerase III, delta subunit [Silicibacter sp. TrichCH4B]
 gi|259346033|gb|EEW57847.1| DNA polymerase III, delta subunit [Silicibacter sp. TrichCH4B]
          Length = 342

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 119/350 (34%), Gaps = 23/350 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  +            + YG+D   +  +        +     +   L  + A ++
Sbjct: 7   EAEGYFARPDPGKTG----LLIYGADAMRVSLKRQQMLAALLGPGAEEEMRLTRMPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   + + +E+ + +         +      +  I++ + ++K 
Sbjct: 63  RKDPAQLLDAVKAVGFFPGIRAVFVED-ANDTATPAITTALQEWQPGDAQIVVTAGQLKA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
           ++ LRK  E  T+  A   Y D        IE  L       +  ++   L         
Sbjct: 122 SSKLRKAFETHTNAYATGIYDDPPSRAE--IERILGEAGMRDVPGDSMSALTDIANEIGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   SR  ++KLS Y   D   +T + +  +   +    +++++N   +G+  +   + 
Sbjct: 180 GD--FSRM-IEKLSLYKHRDSTPLTLEDIGAVAPQSTEAALDDLLNVVAEGRSTDIGPVL 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    +  L  G  + F+ L               + I      +   +R+ +   
Sbjct: 237 RRLQAQGTNAVTLCIGATRHFRTL----YTIAAHPGGPAQGIGGLRPPLYGKRRDRMLRQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
            + W    ++  L  +       R   +    + +  + ++ +A  A   
Sbjct: 293 AQGWGAQKLQNALTILTDTDLQLRSAGQSAPAQALTERAMIRLAMLARSR 342


>gi|254460162|ref|ZP_05073578.1| DNA polymerase III, delta [Rhodobacterales bacterium HTCC2083]
 gi|206676751|gb|EDZ41238.1| DNA polymerase III, delta [Rhodobacteraceae bacterium HTCC2083]
          Length = 341

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 128/352 (36%), Gaps = 21/352 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59
           ++  E+  +  K       S    + YG D   I  +        I     +   L  + 
Sbjct: 3   LSAREASGYFAKPDA----SKTGLLIYGPDAMRIALKRQQVIAALIGSKGEEEMRLTRIP 58

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIK 117
           A +++K+ +   + + + S F   ++  +E+      K +   LEE       +  II+ 
Sbjct: 59  AADLRKDPAALIDAMTAQSFFPGPRVAFVEDAGDGLSKVIAPALEEW---RNGDAQIIVT 115

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLAN 176
           + ++   + LRK+ E  ++  A+  Y D        IE  L   + ++  ++    L A 
Sbjct: 116 AGQLNARSALRKLFEGHSNAFAVGIYDDPPSRAE--IEAELTRAKITMPERDVMDDLTAL 173

Query: 177 LGG-DRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
               D    R  L+KL+ Y L D   ++ + + +    +    ++++IN   + +     
Sbjct: 174 SKDLDPGDFRQTLEKLALYKLNDPTLLSSEDIANCAPTSTEAGLDDVINIVAEARSGEIG 233

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
            +     A  +   AL    L+ F+ L               + I K    +   +R+ +
Sbjct: 234 PIMRKLQAQGVQPVALCIATLRHFKTL----YAAASDPGGAAQGIGKLRPPVFGPRRDRM 289

Query: 295 QESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILYIAQTACK 344
               + W  + +   L  I       R   +   E  ++ + ++ +A  A K
Sbjct: 290 LRQAQGWGIHNLEAALSLIVDTDLKLRSASQHAPEMALVERCLIRLAMMARK 341


>gi|99079884|ref|YP_612038.1| DNA polymerase III, delta subunit [Ruegeria sp. TM1040]
 gi|99036164|gb|ABF62776.1| DNA polymerase III, delta subunit [Ruegeria sp. TM1040]
          Length = 342

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 118/351 (33%), Gaps = 25/351 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  +            + YG+D   +  +        +     +   L  + A E+
Sbjct: 7   EAEGYFARPDPGKTG----LLIYGADAMRVSLKRQQMLAALLGPGAEEEMRLTRMPASEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +K+ +   + + +   F   + + +E+          +   +      +  I++ + ++K
Sbjct: 63  RKDPAQLLDAVKAVGFFPGIRAVFVEDA--NDSATPAITTALEAWQPGDAQIVVTAGQLK 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL---- 177
            ++ LRK  E  T+  A   Y D        IE  L       +  ++   L        
Sbjct: 121 ASSKLRKAFETHTNAYATGIYDDPPSRAE--IERILSEAGVRDVPGDSMSALADIANDIG 178

Query: 178 GGDRIASRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
            GD   SR  ++KLS Y   ++  +T + +  +   +    +++++N   +G+  +   +
Sbjct: 179 PGD--FSRM-IEKLSLYKNGDNSPLTLEDIDAVAPQSTEAALDDLLNVVAEGRSADIGPV 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                A    +  L  G  + F+ L               + I      +   +R+ +  
Sbjct: 236 LRRLQAQGTNAVTLCIGATRHFRTL----YTIAAHPGGAAQGIGGLRPPLYGKRRDRMLR 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
             + W    ++  L  +       R   +      +  + ++ +A  A   
Sbjct: 292 QAQGWGAQKLQNALTILTDTDLQLRSAGQSAPALALTERAMIRLAMLARAR 342


>gi|254477238|ref|ZP_05090624.1| DNA polymerase III, delta [Ruegeria sp. R11]
 gi|214031481|gb|EEB72316.1| DNA polymerase III, delta [Ruegeria sp. R11]
          Length = 342

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 124/350 (35%), Gaps = 23/350 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  +            + YGSD   +  +        +  T  +   L  + A ++
Sbjct: 7   EAEGYFARPDSGKTG----ILIYGSDAMRVSLKRQQMLAALLGPTAEEEMRLTRMPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   + + +E+ + +      +  +      +  I++ + ++K 
Sbjct: 63  RKDPAQLMDAVKAVGFFPGIRAVFVED-ANDTATPAIISALEAWQPGDAQIVVTAGQLKA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
            + LRK  E   +  A   Y D        IE  L   Q   +  ++   L+        
Sbjct: 122 TSKLRKAFEGHGNAYATGIYDDPPSR--SEIERILSEAQIRDVPGDSMSALVDIANDIGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   SR  ++KL+ Y  ED   +T   ++ +   +    +++++N   +G+      L 
Sbjct: 180 GD--FSRM-VEKLALYKYEDSSPLTLDDIQAVAPQSTEAALDDMLNIVAEGRGAEIGPLM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    +  L  G  + F+ L  I    +       + I +        +R+ L   
Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRDRLLRQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
            + W    +   L  +       R   +      ++ + ++ +A+ +  N
Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSRVN 342


>gi|126738685|ref|ZP_01754390.1| hypothetical protein RSK20926_09472 [Roseobacter sp. SK209-2-6]
 gi|126720484|gb|EBA17190.1| hypothetical protein RSK20926_09472 [Roseobacter sp. SK209-2-6]
          Length = 342

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 116/340 (34%), Gaps = 19/340 (5%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                +    + YG+D   +  +        +     +   L  +   E++K+ +   + 
Sbjct: 13  AKPDPAKTGLLIYGADAMRVALKRQQMLAALLGPGAEEEMRLSRMAGGELRKDPALLLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + +   F   + + +E  + +      L  +      +  I++ + ++K  + LRK  E 
Sbjct: 73  VKAVGFFPGARAVFVEE-ANDTAAPAILAALEDWQPGDAQIVVTAGQLKATSKLRKGFEG 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNEL 188
            ++  A+  Y D        IE  L       +  ++   L         GD   SR  +
Sbjct: 132 HSNAYAMGIYDDPPSRAE--IERILGEAGIREVPSDSMSALTDIANDIGPGD--FSRM-V 186

Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +KLS Y   D   ++ + ++ +   +    +++++N   +G+      L     A    +
Sbjct: 187 EKLSLYKHGDSAPLSLEDIQAVAPQSTEAALDDVLNVVAEGRTPEIGPLMGRLQAQGTNA 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L  G  + F+ L         +     + I      +   +R+ +    + W    ++
Sbjct: 247 VTLCIGATRHFRTL----YSVAAAPGGPAQGIGSLRPPLYGKRRDRVLRQAQNWGAERLQ 302

Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
           + L  +       R   +      ++ + ++ ++      
Sbjct: 303 KALTLLTDTDLQLRSAGQTAPALALMERALIRLSMLGRAR 342


>gi|119385491|ref|YP_916547.1| DNA polymerase III, delta subunit [Paracoccus denitrificans PD1222]
 gi|119375258|gb|ABL70851.1| DNA polymerase III, delta subunit [Paracoccus denitrificans PD1222]
          Length = 342

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 117/344 (34%), Gaps = 16/344 (4%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKN 66
           +++ +       +    + +G D   +  +     K  +     +   L  +   +++K+
Sbjct: 10  RYLARPDP----TRPALLLHGQDAMRVALKRAEAVKALVGEGAEEEMRLTRIPGADLRKD 65

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   + + +   F  ++++ + + + +         I      + +I++    + K++ 
Sbjct: 66  PAALLDAVKAVGFFPGQRVV-LVDDAPDAAAPAVASAIAEWKPGDAVIVVAGGALGKSSA 124

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIAS 184
           LRK+ E   + +    Y D      + I   L       + ++A + L+A     D    
Sbjct: 125 LRKLFEPHPAAVTAPIYDDPPG--EEEIGRWLKDAGLREVPRDAMRDLMALSRALDPGDF 182

Query: 185 RNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           R  ++K+  Y   D   +T   +  +   T    ++E+I+   +G+      L       
Sbjct: 183 RQTVEKIGLYKHGDPEPLTPAEIAALAPATIEAEVDELIDCVAEGRAREFGTLMRRIEGQ 242

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 L    L+ F+ L       +         + +    +   +R+ +    + W  
Sbjct: 243 GTVPVTLCIAALRHFRALHA--GASDPGGPGAG--LSRLRPPVFGPRRDRMIRQAQDWGM 298

Query: 304 NLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTACKNN 346
             + + +H++     + R         ++ + +L +        
Sbjct: 299 RALEDAIHQLIETDLVLRSSSRAPAMALMERMLLRLCMMPRGGR 342


>gi|163739860|ref|ZP_02147267.1| DNA polymerase III, delta [Phaeobacter gallaeciensis BS107]
 gi|161386894|gb|EDQ11256.1| DNA polymerase III, delta [Phaeobacter gallaeciensis BS107]
          Length = 342

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 123/348 (35%), Gaps = 23/348 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  K           F+ YG D   +  +        +  T  +   L  + A ++
Sbjct: 7   EADGYFAKPDPGKTG----FLIYGPDAMRVSLKRQQMLAALLGPTAEEEMRLTRMPAADL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   + + +E+ + +      +  +      +  II+ + ++K 
Sbjct: 63  RKDPALLMDAVKAVGFFPGIRAVFVED-ANDTAAPAVIAALEGWQQGDAQIIVTAGQLKA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
           ++ LRK  E   +  A   Y D        IE  L   +   +  ++   L+        
Sbjct: 122 SSKLRKAFEGHRNAYATGIYDDPPSR--GEIERILGTARIRDVPGDSMSALVDIANEIGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   SR  ++KL+ Y  ED   +T   ++ I   +    +++++N   +G+      L 
Sbjct: 180 GD--FSRM-VEKLALYKYEDSTPLTLDDIQAIAPQSTEAAVDDMLNIVAEGRGAEIGPLM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    +  L  G  + F+ L  I    +       + I +        +R  L   
Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRERLLRQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTAC 343
            + W    +   L  +       R   +      ++ + ++ +A+ + 
Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSR 340


>gi|163743395|ref|ZP_02150775.1| hypothetical protein RG210_07825 [Phaeobacter gallaeciensis 2.10]
 gi|161383389|gb|EDQ07778.1| hypothetical protein RG210_07825 [Phaeobacter gallaeciensis 2.10]
          Length = 342

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 23/348 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  K            + YG D   +  +        +  T  +   L  + A ++
Sbjct: 7   EADGYFAKPDPGKTG----LLIYGPDTMRVSLKRQQMLAALLGPTAEEEMRLTRMPAADL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   + + +E+ + E      +  +      +  II+ + ++K 
Sbjct: 63  RKDPALLMDAVKAVGFFPGIRAVFVED-ANETAAPAVIAALEAWQQGDAQIIVTAGQLKA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
            + LRK  E   +  A   Y D        IE  L   +   +  ++   L+        
Sbjct: 122 TSKLRKAFEGHRNAYATGIYDDPPSR--GEIERILGDARIRDVPGDSMSALVDIANEIGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   SR  ++KL+ Y  ED   +T   ++ I   +    +++++N   +G+      L 
Sbjct: 180 GD--FSRM-VEKLALYKYEDSAPLTLDDIQAIAPQSTEAAVDDVLNIVAEGRGAEIGPLM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A    +  L  G  + F+ L  I    +       + I +        +R+ L   
Sbjct: 237 GRLQAQGTNAVTLCIGATRHFRTLYTI--ASDPGG--PAQGIGRLRPPAYGKRRDRLLRQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTAC 343
            + W    +   L  +       R   +      ++ + ++ +A+ + 
Sbjct: 293 AQSWGAFKLETALTLLTDTDLQLRSAGQTAPALALMERALIQLARLSR 340


>gi|87201229|ref|YP_498486.1| DNA polymerase III, delta subunit [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136910|gb|ABD27652.1| DNA polymerase III, delta subunit [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 340

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 121/328 (36%), Gaps = 12/328 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +F F G D+    +  N+    +          V L   E++++     +E  S SLF 
Sbjct: 20  RIFYFCGPDEAGASDAANRIAAMLGEAEK-----VELTGAELRRDPVKLADEARSVSLFG 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            ++II +   +T     + ++ ++   +    ++I +      + + K+ E  T  +   
Sbjct: 75  DRRIIHVR--ATGDDAFEAVDTLVASPVEGWPVLIVATSATDKSRIAKLLENRTDAMVGM 132

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LE 197
            +P +   +   + +       +++ +  + +  +   D   +R+E++K++ Y       
Sbjct: 133 FHPPDMKSVAGAVRDMADAAGVNLTGDLAERIARSTALDTRMARSEIEKIALYLDASPQA 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                 + + +I   +    +  ++NA + G +              +    LL  F ++
Sbjct: 193 RRTADAEVLDEICAVSEDDSLMPVVNAVLGGDVRKLSSELARMREVGLNPVGLLLAFERR 252

Query: 258 FQLLEKIHIIK-ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
              L ++     + S+I+     +   + +    R  L + LR W    +   L ++   
Sbjct: 253 ATQLAQLAGRMGDRSDINAFMEQETAARRVFFRDRPDLTQQLRRWRGPRLARLLERLAQL 312

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344
                      + ++ Q +  IA+ A +
Sbjct: 313 HRTLMADNRNGELVLAQGLAEIARAAAR 340


>gi|114769848|ref|ZP_01447458.1| hypothetical protein OM2255_09776 [alpha proteobacterium HTCC2255]
 gi|114549553|gb|EAU52435.1| hypothetical protein OM2255_09776 [alpha proteobacterium HTCC2255]
          Length = 340

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 128/344 (37%), Gaps = 16/344 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59
           +A  +++ +      N    H   + YG+D   +        K  I     +   L  ++
Sbjct: 3   LAGDKANNYFSNPDAN----HTSILIYGADSMRVALRRQELLKSLIGDNAEEEMRLTRVS 58

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118
           A +++K+ +   + + ++  F   + + +E+ +    +   +++ +      +  +++ +
Sbjct: 59  ASDLRKDPALLLDGLKASGFFPGLRAVFVEDATD--TIAAIIDKAMQDWQKGDAFLVLTA 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            ++   + LRK  E + + +AI  Y D      ++I  +      +   +AK+ L+A   
Sbjct: 117 GQLNARSKLRKTIENYNNSVAIGIYNDPPNE-KEIISTASKHNLNNFDNDAKKELIALGR 175

Query: 179 G-DRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             D    +  L+KLS Y  +D   IT   ++     T    ++E IN     +      +
Sbjct: 176 SLDPGDFQQTLEKLSLYKFKDDTVITSTDIQSCAPVTIDAALDEAINIIADARSDEVGPI 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +           L     + F+ L     +    ++  +  + +    +   +++ +  
Sbjct: 236 LNRLFGQGTNPTTLCIAATRHFRNL----YLAASHSLGPDVALSRARPPVFGHRKDRMVR 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339
             R W    + + L  + +     R       + I+ +  + I+
Sbjct: 292 QARGWGGIRLEKALGVLINTDLSLRSSSKAPAQAILERAFIRIS 335


>gi|126736213|ref|ZP_01751956.1| DNA polymerase III, delta [Roseobacter sp. CCS2]
 gi|126714379|gb|EBA11247.1| DNA polymerase III, delta [Roseobacter sp. CCS2]
          Length = 340

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 123/335 (36%), Gaps = 12/335 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           +   LSH   + +G+D   +  +        +     +   L  +NA +++K+ +   + 
Sbjct: 13  RQPDLSHTALLIFGADPMRVADKRQQVINAMVGPQGEEEMRLTRINAADLRKDPALLDDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           I +   F   ++  +E+ +     +     +      +  ++I + ++   + LRK+ E 
Sbjct: 73  IKAQGFFPGHRVAFVEDATDGLSKVIA-AALSDWQAGDAQVVITAGQLTAKSALRKVVEG 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASRNELQKL 191
            ++ ++I  Y  +    +  +E++L         ++    L++     +    R  ++K+
Sbjct: 132 HSNAVSIGLY--DAPPTIADVEQALKDAGVIQPERDVMDTLMSLANSLEPGDFRQMIEKV 189

Query: 192 SSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           S Y   D   ++   +      +  + +++++     G+      L     A  +    L
Sbjct: 190 SLYKRGDDSPLSIADLTANAPQSAEVDVDDVLEIVTTGQADRLGPLLRNLYAQGVTPVTL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
             G ++ F+ L    +  +    +      +    +   +R+ +      W ++ + + L
Sbjct: 250 SIGAMRHFRRLHV--VASDPGGPAAGA--GRLRPPVFGPRRDKMVGQASHWGRDRLEKAL 305

Query: 311 HKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344
             +       R         ++ + ++ +A  A +
Sbjct: 306 TALTDVDLQLRSANTAPPNALMERVLIRLAMLARR 340


>gi|126724366|ref|ZP_01740209.1| hypothetical protein RB2150_11061 [Rhodobacterales bacterium
           HTCC2150]
 gi|126705530|gb|EBA04620.1| hypothetical protein RB2150_11061 [Rhodobacterales bacterium
           HTCC2150]
          Length = 341

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 128/354 (36%), Gaps = 25/354 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59
           +A  E+ +F  K   ++       + YG+D   +  +  +     I  +  +   L  + 
Sbjct: 3   LAGREAARFFAKPDPSVTG----ILIYGADAMRVALKRQDIIASLIGPSGEEEMRLSRIP 58

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118
           A E++K+ +   + + +   F   ++  +E+      +   ++  ++     +  I++ +
Sbjct: 59  AAELRKDPAMLSDALKAQGFFPGPRVAFVEDAGD--GLTAAIKSALLDWQPGDAQIVVTA 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANL 177
            ++   ++LRK  E   S  A   Y D      + IE  L       I   A   L +  
Sbjct: 117 GQLAARSSLRKYFETHKSAFAAGIYDDPP--TRESIEADLKSAGVGQIDNSAMTDLTSLA 174

Query: 178 ----GGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
                GD    +  ++KL+ Y   D   ++   +  +  +T    ++++++   + +  +
Sbjct: 175 RDLQPGD---FKQTMEKLALYKHGDKSPVSSADIDAVSPNTVEAALDDVLHVVAELRTGD 231

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
              L    +A  +    L  G  + F+ L       +   +     + +    +   +R+
Sbjct: 232 IAPLMRRLVAQGVQPVGLCIGATRHFRTLHA--AASDPGGVQSG--LSRVRPPVFGPRRD 287

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE--KNIIFQTILYIAQTACK 344
            + +    W  + +   L  +       R    +     ++ + ++ ++    +
Sbjct: 288 RMSKQASNWGPHRLEAALAMLLDTDLELRSAGQVAPQMALVERALIRLSMMGKR 341


>gi|56698257|ref|YP_168630.1| hypothetical protein SPO3434 [Ruegeria pomeroyi DSS-3]
 gi|56679994|gb|AAV96660.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 342

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 116/350 (33%), Gaps = 23/350 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+  +  +            + +G+D   I  +        +     +   L  +   E+
Sbjct: 7   EADGYFARPDAGKTG----ILIHGADAMRIALKRQQIIAALLGPGGEEEMRLTRMPGAEL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +K+ +   + + +   F   +++ +E+   E      L  +      +  I++ + ++K 
Sbjct: 63  RKDAAQLLDAVKAVGFFPGPRVVFVEDCP-ETSAPAVLTALEDWQPGDAQIVVTAGQLKP 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----G 178
           ++ +RK  E   +  A   Y D        IE  L       +  E   +L         
Sbjct: 122 SSKIRKAFETHPNAYAAGIYDDPPSRAE--IERMLSAAGIRDVPPEPMTVLSDLARDLGP 179

Query: 179 GDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           GD   +   ++KL+ Y L D   +  + +      +    +++++N   +GK      L 
Sbjct: 180 GDFAQT---MEKLALYKLGDTAPLVLEDIAACAPRSTEAALDDVLNVVAEGKEGEIGPLI 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               A      +L  G  + F+ L         +     + I      +   +R+ +   
Sbjct: 237 RRLQAQGTTPVSLCIGATRHFRTL----YTCASAPGGPSQGIGALRPPVFGPRRDRILNQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
            + W    +   L  +       R   +   +  ++ + ++ +A  +   
Sbjct: 293 AQRWGARRLEAALTVLTDTDLALRSAGQSAPQMALVERAMIRLAWLSRSR 342


>gi|332187674|ref|ZP_08389409.1| DNA polymerase III, delta subunit [Sphingomonas sp. S17]
 gi|332012240|gb|EGI54310.1| DNA polymerase III, delta subunit [Sphingomonas sp. S17]
          Length = 339

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 106/341 (31%), Gaps = 13/341 (3%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           I+++         +++ +G D+    EL     + +          + L++  ++ + + 
Sbjct: 8   IRQALSRPSADIRLYLLHGPDEAGASELARLLAEAMGREAER----IDLDSATLKSDPAR 63

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             +E  + SLF   + I I  +  E   L     ++      + ++  +  +K    + K
Sbjct: 64  LTDEAAALSLFGGPRFIRIAGIGEE--GLAAFTALLEAESAGNPVVAIAPTVKTTAKIVK 121

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           +A      +A  CY         L           ++      L+   G DR     EL+
Sbjct: 122 LALDSPRAMAFGCYAPTAADAERLAVTMASEMGLRLAAGVPARLVEAAGADRAVITRELE 181

Query: 190 KLSSY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           KL+ Y               +  I  D     + + + A ++G++ +             
Sbjct: 182 KLALYLDADTDRPREADHAAMDAIGADLGEAEMGDAVEAVVEGRVGDLGGELALLDEGGA 241

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                L    ++   L ++    +      E ++++    +          +LR W   +
Sbjct: 242 SPIPWLRALARRLIALAEMRADID-KGEPVEAVMKRHR--VFFRDEAKTARALRRWTPAM 298

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +   L +I                +       IAQ   +  
Sbjct: 299 LARALTRIRAAERAVMAPGNAGAVLAEAEATIIAQGIARRG 339


>gi|84500592|ref|ZP_00998841.1| hypothetical protein OB2597_11556 [Oceanicola batsensis HTCC2597]
 gi|84391545|gb|EAQ03877.1| hypothetical protein OB2597_11556 [Oceanicola batsensis HTCC2597]
          Length = 341

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 122/336 (36%), Gaps = 13/336 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                     + YG+D   I           +     +   L  L A EI+++ +   + 
Sbjct: 13  ARPEADRTGLLIYGADGMRIALRRQEVIAALVGPQGEEEMRLTRLPAAEIRRDPALLADA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           I +   F   +++ +E+ +TE      L  +      +  ++I + ++K  + LRK  E 
Sbjct: 73  IKAVGFFPGPRVVFVED-ATEVHAPAILPALEDWREGDAQVVITAGQLKPTSKLRKFFES 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKL 191
             +  A + Y +    +   IE  L     + +S++A + L A     D    R  L+KL
Sbjct: 132 HRNAYAAAIYDNPPTRVE--IEAELKRSGLTDLSQDALRDLSALAMAIDPGDFRQTLEKL 189

Query: 192 SSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             Y   D   +T   +  +   +    I+++++   + K      L     A  +    L
Sbjct: 190 VLYKHGDATPVTPADLAAVAPASTEAEIDDMLDIVAEAKAAEIGPLMQRLRAQGIQPVTL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
             G ++ F+ L         +     + I K    +   +R+ +    + W    +++ L
Sbjct: 250 CIGLMRHFRTL----YAVAAAPGGAGEGINKVRPPVYGPRRDRVLRQAQGWGALKLQQAL 305

Query: 311 HKIDHRIHLARKKK--YLEKNIIFQTILYIAQTACK 344
            +I       R          ++ ++++ +A  A +
Sbjct: 306 TEITETDLALRSAAQTAPAMALVERSLIRLAMMARR 341


>gi|294675812|ref|YP_003576427.1| DNA polymerase II [Rhodobacter capsulatus SB 1003]
 gi|294474632|gb|ADE84020.1| DNA polymerase II [Rhodobacter capsulatus SB 1003]
          Length = 341

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 24/353 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLN 59
           +A I + ++  K       +    + YG+D   +           I         L  L+
Sbjct: 3   LAGIAATRYFGKPDP----ARLGLLIYGADAMRVALRRQEVIAALIGPEGEAEMRLTRLS 58

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKS 118
             +++K+ S   + I     F   +++ +E  +         +  +      +  II+ +
Sbjct: 59  GADLRKDASQVIDGIKEIGFFPGPRVVFVEEATD--TTAPAFDAAVKAWTHGDAQIIVTA 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK-----EAKQIL 173
             +   + LRKI E   +  AI  Y D        IEE L              +   + 
Sbjct: 117 GALTAKSALRKIFENHPNAYAIGIYDDPPSREE--IEEILKKAGLRAIPNETMTDVLALS 174

Query: 174 LANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
            A   GD    R  ++K++ Y   D   +T   V      T    I+E++     G+  +
Sbjct: 175 KALDPGD---FRQTIEKIALYKHGDMSPLTPAEVALSAPSTVEAEIDEVLELVADGRPLD 231

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
              +        +    L     + F+ L       +   +     I K    +   +R+
Sbjct: 232 LARMMRRIEGQGVQPVTLAIMATRHFRTLHM--AASDPGGVGAG--IGKLRPPVFGPRRD 287

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344
           +LQ     W    + E L  +       R   K  +  +I + ++ +A  A K
Sbjct: 288 VLQRQASRWGMMRLEEALKVLIEADLTLRSASKAPQMAVIERALMRLASLAAK 340


>gi|89070616|ref|ZP_01157896.1| hypothetical protein OG2516_11956 [Oceanicola granulosus HTCC2516]
 gi|89043763|gb|EAR49965.1| hypothetical protein OG2516_11956 [Oceanicola granulosus HTCC2516]
          Length = 341

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 119/336 (35%), Gaps = 16/336 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           ++   +    + YG D   I  +        +         L  + A E++K+ +   + 
Sbjct: 13  RSPDPARTGLLIYGPDAMRIAAKRQQVLAALLGPNAESEMRLARIPASELRKDPAALLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           + +   F   + +L+E  +    +   L   + + +  +  +I+ + ++   ++LRK+ E
Sbjct: 73  VKAQGFFPGPRAVLVEEAAD--GLSTTLSAALKEWSAGDAQVIVTAGQLTARSSLRKLFE 130

Query: 133 KFTSVLAISCYPD--NKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
              S  A + Y D   +  +  ++ + SL        +    +      GD    R  L+
Sbjct: 131 SHPSAYAAAIYDDPPGRDEIAGMLKDASLSDVAGEALEALAALARELPPGD---FRQTLE 187

Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           KL+ Y L     ++ + V  +   +    ++ ++ A   G   +   L     A  +   
Sbjct: 188 KLALYKLGATEPVSVEEVALMAPASSEAGVDAVLEAVASGATESIGPLLRRLYAQGVQPV 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L  G ++ F++L       +         + +    +   +R+ +    + W    +  
Sbjct: 248 TLCIGAVRHFRILHT--AASDPGG--PGSGVARLRPPVFGRRRDRIVRQAQQWGVVKLEA 303

Query: 309 TLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTAC 343
            L  +       R       + ++ + ++ +A  A 
Sbjct: 304 GLSILTDTDLRLRSVSAAPAQALMERALIRLAMLAR 339


>gi|110677468|ref|YP_680475.1| hypothetical protein RD1_0052 [Roseobacter denitrificans OCh 114]
 gi|109453584|gb|ABG29789.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 333

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 107/327 (32%), Gaps = 21/327 (6%)

Query: 24  FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            + YG+D   +  +        +     +   L  LN  +++K+ +   + + +   F  
Sbjct: 22  ILIYGADAMRVALKRQQLLAALLGKEAEEEMRLTRLNGGDLRKDPALLLDAVKAVGFFPG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            +   ++  + E      L  +      +  II+ +  +K  + LRK  E   +  A   
Sbjct: 82  PRAAFVQE-ANENTAPAILTALADWQPGDAQIIVTAGALKPTSKLRKAFEAHPNAYAAGI 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQKLSSYC-LEDI 199
           Y  +       IE +L     ++ + +    L       D    R  ++KL+ Y   +  
Sbjct: 141 Y--DNPPTRAEIETTLAETGLALPTGDVMAALSDLAQAIDPGDFRQTIEKLALYKLHDPA 198

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+ Q +      +    +++++    + + +    +    +A       L  G ++ F+
Sbjct: 199 PISLQDIAACAPTSTEADVDDVLMVVAEARAHEIGPMMQKLIAQGANPVGLCIGAMRHFR 258

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L       + S              I    R+ +    R W    +   L  +      
Sbjct: 259 ALH--RAACDTSG----------RPTIFGPNRDRMLAQSRKWGAAKLETALTVLMDTDLQ 306

Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344
            R   +      ++ +  + +A  A +
Sbjct: 307 LRSAGQHAPGMALVERAFIRLAMLAPR 333


>gi|83949883|ref|ZP_00958616.1| hypothetical protein ISM_02275 [Roseovarius nubinhibens ISM]
 gi|83837782|gb|EAP77078.1| hypothetical protein ISM_02275 [Roseovarius nubinhibens ISM]
          Length = 341

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 119/327 (36%), Gaps = 13/327 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKN-ISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            + YG+D   +     +  K  I     +   L  + A +++K+ +   + I +   F  
Sbjct: 22  LLIYGADAMRVAMRRQEVIKALIGPQGEEEMRLTRMPAADLRKDPALLLDAIKAQGFFPG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            ++  +E+ +TE      L  +      +  II+ +  +K  + +RK  E   +  A + 
Sbjct: 82  PRVAFVED-ATETAAPAILAALEDWAEGDAQIIVTAGTLKPTSKIRKAFEGHKNAYAAAI 140

Query: 143 YPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKLSSYCLEDIL 200
           Y D        IE  L       +  EA   L+A     D    R  L+KLS Y L D  
Sbjct: 141 YDDPPSRAE--IEAELSRAGLGNVPGEAMTDLVALSKALDPGDFRQTLEKLSLYKLGDDS 198

Query: 201 -ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            ++ + +++    +     +++++   +G+      +     A  +    L     + F+
Sbjct: 199 PLSSEDIQNCAPGSTEAETDDVLHIVAEGRSQEIGPVLKRLKAQGVQPVGLCIAATRHFR 258

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L       +       + I +    +   +R+ +    + W    + + L  +      
Sbjct: 259 TLYT--AASDPGG--AAQGIARMRPPVFGPRRDRMLRQAQGWGAAKLEQALSILLETDLT 314

Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344
            R   +   +  ++ + ++ +A  A +
Sbjct: 315 LRSAGRVAPDMALVERALIRLAMLARR 341


>gi|86136915|ref|ZP_01055493.1| hypothetical protein MED193_14612 [Roseobacter sp. MED193]
 gi|85826239|gb|EAQ46436.1| hypothetical protein MED193_14612 [Roseobacter sp. MED193]
          Length = 342

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 113/340 (33%), Gaps = 19/340 (5%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                S    + YG+D   +  +        +     +   L  +   +++K+ +   + 
Sbjct: 13  AKPDPSKTGLLIYGADAMRVALKRQQMLAALLGPGADEEMRLSRMPGSDLRKDPAQLLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + +   F   + + +E  + +      L  +      +  II+ + ++K  + LRK  E 
Sbjct: 73  VKAVGFFPGARAVFVEE-ANDTAAPAILAALEEWQPGDAQIIVTAGQLKATSKLRKGFEA 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNEL 188
             +  A   Y D        IE  L   Q   +  ++   L         GD   SR  +
Sbjct: 132 HNNAYATGIYDDPPSRAE--IERILSGAQIRDVPSDSMSALTDIANDIGPGD--FSRM-I 186

Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            KLS Y   D   ++   ++ +   +    +++++N   +G+      L     +    +
Sbjct: 187 DKLSLYKHGDRAPLSLDDIQAVAPQSTEAALDDVLNVVAEGRTPEIGPLISRLQSQGTNA 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L  G  + F+ L               + I +    +   +R+ +    + W  + ++
Sbjct: 247 VTLCIGATRHFRTL----YTVAADPGGPAQGIGRLRPPLYGKRRDRVLRQAQGWGADRLQ 302

Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
             L  +       R   +      ++ + ++ ++      
Sbjct: 303 RGLTILTDTDLALRSAGQTAPALALMERALIRLSMLGRAR 342


>gi|291535780|emb|CBL08892.1| DNA polymerase III, delta subunit [Roseburia intestinalis M50/1]
          Length = 328

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 11/311 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++  L  +  ++  KN      D  +        I  N     +   +   F+ 
Sbjct: 16  IYLLYGTEAYLKKQYKDKL-KNAMAAPDDNMNFTTFEGKNI--NPKEVIDLAETLPFFAD 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++ILIE+    K   + L E + +       I    E+ K + + K  +    ++  S 
Sbjct: 73  RRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEEEVDKRSKMYKTVKNNGKIVEFS- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   I   L    K+I+    Q+ L+  G D      EL+KL  Y L+  +IT
Sbjct: 132 -AQSEELLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYALDRDVIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V  +  +     I E++NA  +     A+ L    L  K P   ++    ++FQ+L 
Sbjct: 191 AEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITRQFQILL 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
            +        +  + I +        +KRNI     + +    ++  L+    ++  +  
Sbjct: 251 NVR-DMAGRGMDNQSIAKNAGIPPFAVKRNI--SQAKGFTMEQLKRALYDGADLEESVKT 307

Query: 320 ARKKKYLEKNI 330
            R    +   +
Sbjct: 308 GRMNDQMAVEL 318


>gi|330813397|ref|YP_004357636.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486492|gb|AEA80897.1| DNA-directed DNA polymerase III [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 337

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 142/333 (42%), Gaps = 7/333 (2%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
              L     + YG +  LI E+ N        T +   ++       + +N   F   IN
Sbjct: 11  QELLKKKFTLLYGENLSLISEIENIITAEAKTTKN--LTIKKYQEEYLLQNKDIFDQLIN 68

Query: 76  STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           + SLF  +++++I + ST+K +   L +       +  II  S  + K + LR +AE  T
Sbjct: 69  AESLFGDQEMVVI-SKSTDKII--ELYDEKNAQDNDKQIIFLSGPLTKKSKLRNLAETST 125

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   I+CY D    L  ++ + L   + S+S+E    +      +R    + + K+    
Sbjct: 126 NFTCIACYNDTPEQLQSILFQKLKDNKISVSREFINSIFEINSLNRQDINDAVSKVQL-I 184

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ITE+++K I   +      EIIN  + G   N   +        +  + +L    
Sbjct: 185 QNTSKITEENLKTIFHSSENSNNFEIINFCLLGDKKNINKVLSNIYEQGINFNEILAALK 244

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            K + L  I +  + ++    ++++  +  I   ++++++E LR W+K+ +++ +  +  
Sbjct: 245 YKVKKLIDI-LESDIADKDPNQLVESFKPPIFWKEKSMVKEQLRRWDKSELKQLMEIVYD 303

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
                +K   +   I+ Q I+  +  +C +N +
Sbjct: 304 IEVECKKNYDVSNIILQQFIVSTSNKSCLDNRY 336


>gi|149173352|ref|ZP_01851982.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797]
 gi|148847534|gb|EDL61867.1| hypothetical protein PM8797T_21448 [Planctomyces maris DSM 8797]
          Length = 338

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 125/327 (38%), Gaps = 20/327 (6%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN- 66
           +F+     + F    V + YG D+ +  E I   +  +     D  S+   +   ++K  
Sbjct: 7   EFLLNPAASEF--GPVVVLYGDDRYMKQEAIKAIEPLVLGEEEDT-SITRYDGKRLEKEL 63

Query: 67  -ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
             ST ++E+ + S++  K+++++++           LE+ +     +  +I+      K+
Sbjct: 64  PPSTLFDELKTVSMWGDKRLVIVDDAEKFVSAFRGKLEKYLEAPSKSSFLILDVKSWSKS 123

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI-GQKSISKEAKQILLANLGGDRIA 183
             L K+       L + C       L   I ++     QK IS+EA  +L+  +G     
Sbjct: 124 TRLAKLV--SKIGLDLECKELKGGALAKWICDTAGQLHQKQISREAAALLVELVGTHCGQ 181

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              EL+KL+++  +   I+   ++ ++          + +A   G I +A+   D  L +
Sbjct: 182 IHQELEKLTTFVGDQPRISPDDIRAVVGGWKAETTWAMTDAVRDGNIGDALHYLDNLLVA 241

Query: 244 KMPSHALLHGF----LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
                 +L G      + F+  ++            ++ I++    + P   +  +  LR
Sbjct: 242 GEAPQKILGGLNFVWRKYFKATQQ-----AVQGTPLKQAIKQAG--VFPRDIDSTERYLR 294

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +  H +       + K  L
Sbjct: 295 RLTRKRAEKICHWLLETDLNLKGKSRL 321


>gi|257414009|ref|ZP_04744970.2| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82]
 gi|257201505|gb|EEU99789.1| DNA polymerase III, delta subunit [Roseburia intestinalis L1-82]
          Length = 342

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 11/311 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++  L  +  ++  KN      D  +        I  N     +   +   F+ 
Sbjct: 30  IYLLYGTEAYLKKQYKDKL-KNAMAAPDDNMNFTTFEGKNI--NPKEVIDLAETLPFFAD 86

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++ILIE+    K   + L E + +       I    E+ K + + K  +    ++  S 
Sbjct: 87  RRVILIEDSGFFKSSCEDLAEYLTQVAPATHFIFVEEEVDKRSKMYKTVKNNGKIVEFS- 145

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   I   L    K+I+    Q+ L+  G D      EL+KL  Y L+  +IT
Sbjct: 146 -AQSEELLTRWILTRLKKEGKNITGSVMQLFLSRTGTDMGNIDRELEKLICYALDRDVIT 204

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V  +  +     I E++NA  +     A+ L    L  K P   ++    ++FQ+L 
Sbjct: 205 AEDVMAVTTEQTTNKIFEMVNAIAEHNQRKALDLYYDLLTLKEPPMRIMFLITRQFQILL 264

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
            +        +  + I +        +KRNI     + +    ++  L+    ++  +  
Sbjct: 265 NVR-DMAGRGMDNQSIAKNAGIPPFAVKRNI--SQAKGFTMAQLKRALYDGADLEESVKT 321

Query: 320 ARKKKYLEKNI 330
            R    +   +
Sbjct: 322 GRMNDQMAVEL 332


>gi|126463256|ref|YP_001044370.1| DNA polymerase III, delta [Rhodobacter sphaeroides ATCC 17029]
 gi|126104920|gb|ABN77598.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 330

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +++ K       S    + +G D   +  +        I         L  L A ++
Sbjct: 7   EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +++ +   + + +   F   + +L+E  +    +   + +++ +    +  +++ +  + 
Sbjct: 63  RRDPAALMDAMTAKGFFDGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180
             ++L+K+ E   + + I  Y D      + ++  L       I  +A   L A     D
Sbjct: 121 GRSSLKKLFEAHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178

Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  ++KL+ Y L D   ++   V ++   +    ++E+I+A  +G+      L   
Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRTEVSPLVRR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A  + + AL  G ++ F+ L ++    +                    ++  +Q   R
Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286

Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338
            W  N + E +  +       R   +     ++ + ++ +
Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326


>gi|322421078|ref|YP_004200301.1| DNA polymerase III subunit delta [Geobacter sp. M18]
 gi|320127465|gb|ADW15025.1| DNA polymerase III, delta subunit [Geobacter sp. M18]
          Length = 329

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 123/335 (36%), Gaps = 13/335 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   K    S  +++ YG +  L+   + +            F+L V    E 
Sbjct: 1   MKPEEFNRAVEKGELAS--LYLLYGDEPYLVERAVKKLLDRAVDPGFRDFNLNVFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + +    ++   +  +F++++++L++         ++ L   +        +I+++ ++ 
Sbjct: 59  KGDE--VFSASQTLPMFAERRVVLVKKGGDLSASAMEVLLPYLQDPSPGTCLILQAEKVD 116

Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                    +K    +     Y      L   + + +    K I   A ++L   +G + 
Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIEPAAAELLAYLVGNNL 173

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
               ++++KL  YC +   +T   VK I+ DT V  + E  +A    ++  A+ +    L
Sbjct: 174 QELVSQIEKLCIYCGKKETVTVADVKAIVSDTKVESVFEFTDALGSKELPRALKMLTALL 233

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                   +L    + ++ L ++  + +      E             K   +    R +
Sbjct: 234 QDGEAPLRILGAVARHYRQLWQVRELLDRKVPQAELAKASGINPYFLGK---VTAQARNY 290

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
               ++    ++   +  A K   LE+ +  + ++
Sbjct: 291 TTGELKRIFERMLE-LDQAFKSGGLEEPLFERFVM 324


>gi|77464415|ref|YP_353919.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides 2.4.1]
 gi|77388833|gb|ABA80018.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 330

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +++ K       S    + +G D   +  +        I         L  L A ++
Sbjct: 7   EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +++ +   + + +   F   + +L+E  +    +   + +++ +    +  +++ +  + 
Sbjct: 63  RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180
             ++L+K+ E   S + I  Y D      + ++  L       I  +A   L A     D
Sbjct: 121 GRSSLKKLFEAHPSAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178

Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  ++KL+ Y L D   ++   V ++   +    ++E+I+A  +G+      L   
Sbjct: 179 PGDVRQTVEKLALYKLGDPAPLSAADVAEMAPVSIEAGVDEVIHAVAEGRRTEVSPLVRR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A  + + AL  G ++ F+ L ++    +                    ++  +Q   R
Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286

Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338
            W  N + E +  +       R   +     ++ + ++ +
Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326


>gi|332559305|ref|ZP_08413627.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides WS8N]
 gi|332277017|gb|EGJ22332.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides WS8N]
          Length = 330

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +++ K       S    + +G D   +  +        I         L  L A ++
Sbjct: 7   EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +++ +   + + +   F   + +L+E  +    +   + +++ +    +  +++ +  + 
Sbjct: 63  RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180
             ++L+K+ E   + + I  Y D      + ++  L       I  +A   L A     D
Sbjct: 121 GRSSLKKLFESHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178

Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  ++KL+ Y L D   ++   V ++   +    ++E+I+A  +G+      L   
Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRTEVSPLVRR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A  + + AL  G ++ F+ L ++    +                    ++  +Q   R
Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286

Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338
            W  N + E +  +       R   +     ++ + ++ +
Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326


>gi|84515042|ref|ZP_01002405.1| hypothetical protein SKA53_12498 [Loktanella vestfoldensis SKA53]
 gi|84511201|gb|EAQ07655.1| hypothetical protein SKA53_12498 [Loktanella vestfoldensis SKA53]
          Length = 340

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 124/336 (36%), Gaps = 14/336 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           +    +H   + +G+D   +  +        +     +   L  +NA +++K+ +   + 
Sbjct: 13  RKPDPAHAGLLIFGADPMRVATKRQQAIAALVGPQGDEEMRLTRINAADLRKDAALLDDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           I +   F   ++  +E+ +    +   +E  +      +  +++ + ++   + LRK  E
Sbjct: 73  IKAQGFFPGHRVAFVEDATD--TLSKLIEAALTDWRPGDAQLVVTAGQLTAKSALRKAFE 130

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASRNELQK 190
              + +AI  Y D     M  I  +L         ++    L A  G  +    R  + K
Sbjct: 131 SHRNAMAIGIYDDPPS--MSDIARALADAGLEQPGRDVMDALFALAGTLEPGDFRQTVDK 188

Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +  Y   D   +T   V      +  + ++++++    G++     +     A  +    
Sbjct: 189 VGLYKQGDATPLTIADVMANAPQSAEVDVDDVLDVVTAGQVDQLGPVLRGLYAQGVTPVT 248

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L  G ++ F+ L    +  +    S    + +    +   +R+ +   +  W ++ + + 
Sbjct: 249 LCIGAMRHFRRLHV--VASDPGGASAG--VARLRPPVYGPRRDKIARQVSHWGRDRLEKA 304

Query: 310 LHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344
           L  +       R      +  ++ +T++ +A  A +
Sbjct: 305 LTALTDTDLQLRSASTAPQAALMERTLIRLAMMARR 340


>gi|85704106|ref|ZP_01035209.1| hypothetical protein ROS217_13946 [Roseovarius sp. 217]
 gi|85671426|gb|EAQ26284.1| hypothetical protein ROS217_13946 [Roseovarius sp. 217]
          Length = 342

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 111/338 (32%), Gaps = 15/338 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                     + YG+D   +  +        +  T      L  + A +++K+ +   + 
Sbjct: 13  AKPEAQRTGLLIYGADAMRVALKRQEMLAALLGPTADAEMRLTRMPAADLRKDPAALMDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + +   F   +   +E+ + +      L  +      +  I++ +  +K  + +RK  E 
Sbjct: 73  VKAQGFFPGPRAAFVED-ANDTAADAILAALSDWRAGDAQIVVTAGALKSTSKIRKAFES 131

Query: 134 FTSVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
             +  A+  Y D    +     L    L      +  +   +      GD    R  ++K
Sbjct: 132 HPNAYAVGLYDDPPSREEIEAALTRAGLRDVPGPVMADLTALARDLDPGD---FRQTVEK 188

Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           L+ Y L D   +    +      +    +++I+N   +G+      +     A       
Sbjct: 189 LALYKLGDATPLNASDIAACAPASTEADLDDILNIVAEGRSSEIGPVMRRLKAQGTQPVG 248

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L  G  + F+ L               + I +    I   +R+ +    + W    +++ 
Sbjct: 249 LCIGATRHFRAL----YTAASDPGGAAQGIARMRPPIFGPRRDRMLRQAQGWGAERLQQA 304

Query: 310 LHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
           L  +       R   ++  E  ++ + ++ +A  A   
Sbjct: 305 LTILTDTDLTLRSAAQRAPEMALVERALIRLAMLASAR 342


>gi|221640306|ref|YP_002526568.1| DNA polymerase III subunit delta [Rhodobacter sphaeroides KD131]
 gi|221161087|gb|ACM02067.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides KD131]
          Length = 330

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 126/340 (37%), Gaps = 26/340 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +++ K       S    + +G D   +  +        I         L  L A ++
Sbjct: 7   EAVRYLAKPDP----SRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +++ +   + + +   F   + +L+E  +    +   + +++ +    +  +++ +  + 
Sbjct: 63  RRDPAALMDAMTAKGFFEGPRAVLVEEAAD--GLTALIGDVLKEWRPGDAQVVVTAGGLT 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180
             ++L+K+ E   + + I  Y D      + ++  L       I  +A   L A     D
Sbjct: 121 GRSSLKKLFEAHPNAVCIGLYDDPP--TREEVDTMLRQAGLGQIEPQAMAGLTALARDLD 178

Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  ++KL+ Y L D   ++   V ++   +    ++E+I+A  +G+      L   
Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSAADVAEMAPASIEAGVDEVIHAVAEGRRVEVSPLVRR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A  + + AL  G ++ F+ L ++    +                    ++  +Q   R
Sbjct: 239 LEAQGVNAVALCIGAMRHFRSLHRLAAGADPGRGG------------FNPRQERMQRQAR 286

Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338
            W  N + E +  +       R   +     ++ + ++ +
Sbjct: 287 QWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRL 326


>gi|149915699|ref|ZP_01904225.1| hypothetical protein RAZWK3B_07077 [Roseobacter sp. AzwK-3b]
 gi|149810591|gb|EDM70434.1| hypothetical protein RAZWK3B_07077 [Roseobacter sp. AzwK-3b]
          Length = 341

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 117/336 (34%), Gaps = 13/336 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                     + +G D   +           I         L  + A +++K+ +   + 
Sbjct: 13  ARPEAGRTGLLIHGPDGMRVALRRQEVIAALIGPQGEQEMRLTRIPAADLRKDPAMLLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + +   F   ++  +E+ S E      ++ +      +  +++ + ++K  + LRK+ E 
Sbjct: 73  VKAQGFFPGPRVAFVEDAS-ETVAQIIIDALAEWREGDAQVVVTAGQLKPASKLRKLFEG 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGG-DRIASRNELQKL 191
             +  A + Y D        IE +L     + I+ +A + L A     D    R  ++K+
Sbjct: 132 HPNAYAAAIYDDPPSRAE--IEATLKRVGLTNIAGDAMRDLTALAHDLDPGDFRQTMEKI 189

Query: 192 SSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             + L D   ++ + V      +    +++I+N   + +      +     A  +    L
Sbjct: 190 GLFKLGDPDPLSSEDVAACAPSSTEAELDDILNIVAEARSGEIGPMMKRLRAQGVQPVTL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                + F+ L               + I +    +   +R+ +    + W    +++ L
Sbjct: 250 CISATRHFRTL----YAAASDPGGPAQGIGRVRPPVFGPRRDRMVRQAQGWGAQKLQDAL 305

Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACK 344
             +       R   +      ++ +T++ +A  A +
Sbjct: 306 GYLTDTDLELRSAGQHAPAMALVERTLIRLAMMAAR 341


>gi|260574446|ref|ZP_05842450.1| DNA polymerase III delta [Rhodobacter sp. SW2]
 gi|259023342|gb|EEW26634.1| DNA polymerase III delta [Rhodobacter sp. SW2]
          Length = 339

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 123/343 (35%), Gaps = 22/343 (6%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ ++  K            + +G D   +           I         L  L+A ++
Sbjct: 7   EASRYFGKPDP----KRTGLLIFGQDAMRVALRRQEVIAALIGPEGEAEMRLARLSAADL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN--ICNHIIIIKSNEI 121
           +K+ +   +   +   F   ++  +E  S     +  L  I +K+    +  +I+ +  +
Sbjct: 63  RKDPAALIDACRAQGFFPGPRVAFLEEASD---AVAPLVAIALKDWRPGDATLIVTAGNL 119

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGGD 180
              + L+K+ +   S ++I  Y D        IE  L      +IS  A   LLA LG D
Sbjct: 120 TGKSALKKLFDDHGSAISIGLYDDPPSREE--IEAVLTKSGLAAISPAAMTDLLA-LGRD 176

Query: 181 R--IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
                 R  ++KLS Y  +D   +T + V      +    ++++++A  +G+      L 
Sbjct: 177 LDPGDFRQTVEKLSLYKWQDATPLTPEDVAACAPGSIEAEVDDVLHAVAEGRGNAVGPLM 236

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                  +   +L    L+ F+ L       +    +    + +    +   +R+ + + 
Sbjct: 237 RRLEGQGVLPVSLCINALRHFRTLHF--AAADPGGPASG--LARMRPPVFGPRRDRMLQQ 292

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339
           ++ W    +   L  +       R         ++ + ++ +A
Sbjct: 293 VQGWGLRNLETALSLLVETDLTLRSTSRAPAMAVMERALIRLA 335


>gi|310817223|ref|YP_003965187.1| hypothetical protein EIO_2816 [Ketogulonicigenium vulgare Y25]
 gi|308755958|gb|ADO43887.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 343

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 112/331 (33%), Gaps = 18/331 (5%)

Query: 25  IFYGSDKGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  G D   + E   Q     +         L  + A +++K+ +   + + +   F   
Sbjct: 23  LIAGEDSVRVAERRRQLLTALLGPNAESEMRLTRIAAADLRKDGALLLDALKAIGFFPGP 82

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           + +L+E+ +    +   + + +      +  +II +  +   ++LRK+AE      A+  
Sbjct: 83  RAVLLEDATD--GLTQQIGKAMKDWAQGDAQLIITAGALTARSSLRKLAEAAPRFAAVVL 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSI----SKEAKQILLANLGGDRIASRNELQKLSSY-CLE 197
           Y D        + + L     S      K A   L   L  D    R  ++K+S Y   +
Sbjct: 141 YDDPPGPEE--VAQMLAEAGLSTVAPEGKAAILALSKLL--DPGDFRQTIEKISLYKIGD 196

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +  + +      +H    + +I A   G+            A  +    L    L+ 
Sbjct: 197 SSPVGLEDIAACAPQSHEADTDTLIAAVALGQREAIAGQLRLLYAQGVQPVGLCIATLRH 256

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F+ L     +     ++    + +    +   +R+ +    R WN   V E LH I    
Sbjct: 257 FRQLHG--AMTYPGGVAEG--LTRATPPVFGPRRDAIIAQSRGWNVARVEEALHSILETD 312

Query: 318 HLAR-KKKYLEKNIIFQTILYIAQTACKNNN 347
              R         ++ + +L +A  A     
Sbjct: 313 LRLRASNPPPAGPLVERMLLRLASFARAQTR 343


>gi|325661908|ref|ZP_08150528.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471760|gb|EGC74978.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 326

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 9/314 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +  ++  K I +   D  +        I        +   +   FS+
Sbjct: 16  IYLLYGEEVYLKKQYKDRLSKAI-VNEGDTMNYSYYEGKGIH--PGELIDLAETMPFFSE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I++EN    K     L + + +       +    E+ K   L K  +    ++ +  
Sbjct: 73  RRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAKGRIVELG- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L+  I   +    K IS+   Q LLA  G D    + EL+KL  Y LE   IT
Sbjct: 132 -RQDEHTLVRWILGMVKREGKQISERTVQFLLAKTGDDMENLQRELEKLFCYTLEKDAIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V++I        I E++ A  + K   A+ L    LA K P   +L   +++F+LL 
Sbjct: 191 VEDVEEICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRILFLLVRQFRLLL 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           ++    + S    ++I +KT  +   + +   Q   +++ K  +RE L  +   +  + K
Sbjct: 251 EVK-ELDQSGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE-MAADLEESVK 306

Query: 323 KKYLEKNIIFQTIL 336
              L   +  +  +
Sbjct: 307 TGRLTDALATELFI 320


>gi|117926654|ref|YP_867271.1| DNA polymerase III subunit delta [Magnetococcus sp. MC-1]
 gi|117610410|gb|ABK45865.1| DNA polymerase III, delta subunit [Magnetococcus sp. MC-1]
          Length = 346

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 127/329 (38%), Gaps = 19/329 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           V + YG ++G I +   + ++  +       F L      ++  +   F +   +    S
Sbjct: 20  VILLYGQEQGRIEDAAKKIEQWVLGPDADADFDLERFYGGDL--DEGRFLSSCRAIPFLS 77

Query: 82  KKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
             ++++++          K  L  LE    +   + +++  ++ +  ++TLRK  EK   
Sbjct: 78  PMRLVVVKEADKLLLPLRKSFLSYLEN---EPSKSSVVLFLADNLDASHTLRKGLEKHEQ 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGGDRIASRNELQKLSSYC 195
              +  Y      +   IEE L     S    +   +L+  L GD  ++  EL+KL  Y 
Sbjct: 135 SWVVPFYALAGREMGGWIEEHLRCHGFSAAEPDLIPLLVQLLEGDTRSAEQELEKLFLYV 194

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALLHG 253
            +   I  +  + I+ +  +    ++ +A ++G    A+   D  + +     +  LL  
Sbjct: 195 GKPGPIRLEDARAIVGEAALHSGFDLADAVLRGDAAKALHTLDGLVQAGGMSEALPLLGL 254

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
             Q+ + L +     +   +S +++ +K    I   +++      R  +   + E L   
Sbjct: 255 ITQRIRRLAQAQGWMQR-GMSGDEVTRKLR--IFWKEKDHFLAQCRQVSAKHLAEGLITC 311

Query: 314 DHRIHLAR--KKKYLEKNIIFQTILYIAQ 340
            +     +  +     + ++   IL +A+
Sbjct: 312 QNADRQLKGAEGARPPEQVLGIMILRLAR 340


>gi|163734315|ref|ZP_02141755.1| hypothetical protein RLO149_08724 [Roseobacter litoralis Och 149]
 gi|161392323|gb|EDQ16652.1| hypothetical protein RLO149_08724 [Roseobacter litoralis Och 149]
          Length = 333

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 107/327 (32%), Gaps = 21/327 (6%)

Query: 24  FIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            + YG+D   +  +        +     +   L  LN  +++K+ +   + + +   F  
Sbjct: 22  ILIYGADAMRVALKRQQLLAALLGKEAEEEMRLTRLNGGDLRKDPALLLDAVKAVGFFPG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            +   ++  + E      L  +      +  II+ +  +K  + LRK  E   +  A   
Sbjct: 82  PRAAFVQE-ANENTAPAILTALADWQSGDAQIIVTAGALKPTSKLRKAFEAHPNAYAAGI 140

Query: 143 YPDNKIHLMDLIEESLLIGQKSI-SKEAKQILLANLGG-DRIASRNELQKLSSYC-LEDI 199
           Y  +       IE +L     ++ + +    L       D    R  ++KLS Y   +  
Sbjct: 141 Y--DNPPTRAEIETTLAETGLALPTGDVMAALSDLAQAIDPGDFRQTIEKLSLYKLHDPA 198

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+ Q +      +    +++++    + + +    +    +A       L  G ++ F+
Sbjct: 199 PISLQDIAACAPTSTEADVDDVLMVVAEARAHEIGPMMQKLIAQGANPVGLCIGAMRHFR 258

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L       + S              I    R+ +    R W    +   L  +      
Sbjct: 259 ALH--RAACDTSG----------RPTIFGPNRDRMLAQSRKWGAVKLETALTVLTDTDLK 306

Query: 320 ARK--KKYLEKNIIFQTILYIAQTACK 344
            R   +      ++ +  + +A  A +
Sbjct: 307 LRSAGQHAPGMALVERAFIRLAMLAPR 333


>gi|331085701|ref|ZP_08334784.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406624|gb|EGG86129.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 326

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 129/314 (41%), Gaps = 9/314 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +  ++  K I +   D  +        I        +   +   FS+
Sbjct: 16  IYLLYGEEVYLKKQYKDRLSKAI-VNEGDTMNYSYYEGKGIH--PEELIDLAETMPFFSE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I++EN    K     L + + +       +    E+ K   L K  +    ++ +  
Sbjct: 73  RRLIVVENSGFFKNATPELADYLKELPETSYFLFVEEEVDKRGKLYKAVKAKGRIVELG- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L+  I   +    K IS+   Q LLA  G D    + EL+KL  Y LE   IT
Sbjct: 132 -RQDEHTLVRWILGMVKREGKQISERTVQFLLAKTGDDMENLQRELEKLFCYTLEKDAIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V++I        I E++ A  + K   A+ L    LA K P   +L   +++F+LL 
Sbjct: 191 VEDVEEICTTHISNQIFEMVAAVAEKKQKRALELYYDLLALKEPPMRILFLLVRQFRLLL 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           ++    + S    ++I +KT  +   + +   Q   +++ K  +RE L  +   +  + K
Sbjct: 251 EVK-ELDQSGYGRKEIGEKTGLHTFVVGK--YQGQAKLFKKKELREILE-MAADLEESVK 306

Query: 323 KKYLEKNIIFQTIL 336
              L   +  +  +
Sbjct: 307 TGRLTDALATELFI 320


>gi|159042611|ref|YP_001531405.1| DNA polymerase III subunit delta [Dinoroseobacter shibae DFL 12]
 gi|157910371|gb|ABV91804.1| DNA polymerase III, delta subunit [Dinoroseobacter shibae DFL 12]
          Length = 341

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 114/339 (33%), Gaps = 12/339 (3%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVLNALEIQ 64
           + + +              + YG+D   +        K +     D    L  L+  +++
Sbjct: 4   APRDLPGFVARPEPGRAGILLYGADAMRVSLRRQALLKALVGEKGDEEMRLTRLHGPDLR 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           ++ +   + + + S++   + + + + +T++        +      + ++++ +  +   
Sbjct: 64  RDPAALMDAMKAISMYPGPRAVHV-DAATDQAAPAITAALGDWREGDAVLVVTAGSLGAK 122

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRI 182
           + LRK  E   +  A   Y D        IE  L       + ++A   L       D  
Sbjct: 123 SALRKAFEGHRNAYAAGIYDDPPDRAE--IEALLRSAGIAEVGRDAMSDLTDLSRAVDPG 180

Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                ++KL+ Y   D   IT + +  +   T    I+ +++A  + ++     L     
Sbjct: 181 DFAQIVEKLALYKHGDASPITPEDLAAVAPATTEAEIDALLHAVAEAEVARIPPLVARLS 240

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                +  L  G +  F+ L       +    +    I +    +    RN +    + W
Sbjct: 241 GQGEGAVRLCIGAVMHFRRLYT--AAIDPGGPAAG--ISRARPPVFGPARNRMIRQAQSW 296

Query: 302 NKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIA 339
               +   L  +       R  +   +  ++ + ++ +A
Sbjct: 297 GAPKLETALSILTETDLALRSSQKAPQMALMERALIRLA 335


>gi|225378291|ref|ZP_03755512.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM
           16841]
 gi|225209858|gb|EEG92212.1| hypothetical protein ROSEINA2194_03952 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 123/312 (39%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L  +  ++ KK + +   D  +       +   N     +   +   F+
Sbjct: 15  KIYLLYGDEAYLKKQYKDKLKKAL-VQPDDTMNFTAYEGKDT--NPKEVIDLSETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++ILIEN    K   + L E + +     + +    E+ K + L K  +    ++  +
Sbjct: 72  DRRVILIENSGFFKGSCEELAEYMPQVPDTTLFLFVEEEVDKRSKLYKAVKNVGKIVEFT 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
              +    L   I   L    K+I+    Q+ L+  G D      EL+KL  YC++  +I
Sbjct: 132 IQTEEL--LTRWILTRLKKEGKNITGSVMQLFLSKTGTDMGNIDRELEKLICYCMDKDVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             + V+ +  +     I +++NA  +     A+ L    L  K PS  +++   ++FQ+L
Sbjct: 190 EAKDVEAVTTEQTTNKIFDMVNAIAEHNQKKALDLYYDLLTLKEPSMRIMYLISRQFQIL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318
             +             + QK       ++RN + ++ + +    +++ +      +  + 
Sbjct: 250 LNVK-DMSQKGFDNNTMAQKAGIPPFAVRRN-VTQA-KGFTMQQLKQAIRDGVDFEEAVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRMNDQMAVEL 318


>gi|103488495|ref|YP_618056.1| DNA polymerase III, delta subunit [Sphingopyxis alaskensis RB2256]
 gi|98978572|gb|ABF54723.1| DNA polymerase III, delta subunit [Sphingopyxis alaskensis RB2256]
          Length = 343

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 115/336 (34%), Gaps = 9/336 (2%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
             L  +  + +  G D+  +  +                  + L   ++ ++ S    E 
Sbjct: 13  TRLDPAVRLILLTGPDEATMDAVATHLVGLAGKEAER----LDLTNGQLAQDPSLLAVEA 68

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            S SLF+  ++I ++        L  +E ++      + +I     +   + L K+ E  
Sbjct: 69  ASMSLFAPNRLIRVDLSGGGDDSLAAVEALLAAETAINPVIATGASVTAKSKLVKLVEGS 128

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              +A  CY  ++  L+ +   +       ++    Q+L+  + GD+   R E++K++ Y
Sbjct: 129 DHAVAAICYQPDRRALVGIAMAAAQDQGLRLANAEAQLLVDLVSGDQALMRREIEKIALY 188

Query: 195 ----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
                     +T   +  +   TH   +   IN  + GK+     +     A  +    +
Sbjct: 189 LDAGADRQRQVTAADIAALGAATHEEDVSACINVALGGKVRELPDMLATAAAVGVAEIRI 248

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +   L ++    +        ++      +   +R+ +   L IW+   +   +
Sbjct: 249 IRALAIRAVQLARLRAEVD-GGAHPATVVSARSSGVFWKERDAVTAQLHIWDSLRIARLM 307

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            ++       +        +  + +  IA  A +  
Sbjct: 308 SRLLDCERALKASGTPGAVLFRKLMTDIAHQAARAR 343


>gi|197117150|ref|YP_002137577.1| DNA polymerase III subunit delta [Geobacter bemidjiensis Bem]
 gi|197086510|gb|ACH37781.1| DNA polymerase III, delta subunit [Geobacter bemidjiensis Bem]
          Length = 329

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 115/314 (36%), Gaps = 12/314 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   K    S  +++ YG +  L+   + +  +         F+L V    E 
Sbjct: 1   MKPEEFSKAVDKGELAS--LYLLYGDEPYLVERAVKKLLERAVDPSFRDFNLNVFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + +    ++   +  +F++++++L++         ++ L   +        +I+++ ++ 
Sbjct: 59  KGDE--VFSAAQTLPMFAERRVVLVKKGGELSAGAMEILLSYVQDPCPGTCLILQAEKVD 116

Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                    +K    +     Y      L   + + +    K I   A ++L   +G + 
Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIDSAAAELLAYLVGNNL 173

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
               ++++KL  YC +   I    VK I+ DT V  + E  +A    ++  A+ +    L
Sbjct: 174 QELVSQIEKLCIYCGKKESIGVADVKAIVSDTKVESVFEFTDALGAKELPRALRMLTSLL 233

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                   +L    + ++ L ++  + +      E             K   + +  R +
Sbjct: 234 QDGEAPLRILGAVSRHYRQLWQMRELLDRRLSPAELAKASGINPYFLKK---VTDQARNY 290

Query: 302 NKNLVRETLHKIDH 315
               +++   ++  
Sbjct: 291 TVGELKQVFERMLE 304


>gi|260429417|ref|ZP_05783394.1| DNA polymerase III, delta subunit [Citreicella sp. SE45]
 gi|260420040|gb|EEX13293.1| DNA polymerase III, delta subunit [Citreicella sp. SE45]
          Length = 342

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 119/337 (35%), Gaps = 15/337 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNIS 68
            Q   +    S    + YG D   +           +         L  + A E++++ +
Sbjct: 8   AQAFFRKPDASRAGVLLYGEDAMRVAHRRQEVIAALVGPEGEAEMRLTRIQAPELRRDPA 67

Query: 69  TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTL 127
              + I +   F   ++  +E+      + D +   +      +  +I+ + ++   + L
Sbjct: 68  MLLDAIKAQGFFPGPRVAFVEDAGD--GLSDVIGTALGDWRDGDAQVIVTAGQLAAKSKL 125

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASR 185
           RK+ E   + LAI  Y D      D IE +L       + + A + L       D    R
Sbjct: 126 RKLFESHHNALAIGIYSDPPGR--DEIEAALRAAGLEQVDRAAFEALEGLGRALDPGDFR 183

Query: 186 NELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
             L+K++ Y L+D   +  + V      +    +++I++   +G+      L        
Sbjct: 184 QVLEKVALYKLDDPTPLAPEEVAACAPASIEAELDDILHVVAEGRSAEIGPLVQRLAGQG 243

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    LL   ++ F++L         +    +  +Q+    +   +R+ +    + W  +
Sbjct: 244 VTPVTLLIMAMRHFRVL----YALASAPGGPQAGVQRLRPPLFGPRRDRMLRQAQGWQPD 299

Query: 305 LVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIA 339
            +   L  +       R   ++     ++ +  + +A
Sbjct: 300 RLEAALAMLMDTDLSLRSAGQRAPAMALVERGFVRLA 336


>gi|114765736|ref|ZP_01444834.1| hypothetical protein 1100011001327_R2601_12473 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541953|gb|EAU44988.1| hypothetical protein R2601_12473 [Roseovarius sp. HTCC2601]
          Length = 342

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 125/343 (36%), Gaps = 15/343 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIS 68
            Q   +    S    + +G D   +     +     +         L  + A E++++ +
Sbjct: 8   AQAFFRKPDPSRAGVLLFGEDAMRVAHRRQEVIGALVGPEGEAEMRLTRIPASELRRDSA 67

Query: 69  TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTL 127
              + I S   F   ++  +E+ +    + D ++  + +    +  II+ + ++   + L
Sbjct: 68  MLLDAIKSQGFFPGPRVAFVEDATD--GLTDVIKTALDEWREGDAQIIVTAGQLAAKSKL 125

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-DRIASR 185
           RK+ E F +  +I  Y D      D IE +L       + + A   L       D    R
Sbjct: 126 RKLFEGFHNAFSIGIYSDPPGR--DEIEAALRKAGLEQVDRAAFDALEGLARALDPGDFR 183

Query: 186 NELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
             L+K++ Y L+D   +T   V      +    +++I+N   +G+      L        
Sbjct: 184 QVLEKVALYKLDDPEPLTPDEVALCAPASIEAELDDILNVVAEGRSAEIGPLVQRLEGQG 243

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    LL   ++ F++L         +    +  +Q+    +   +R+ +    + W+ +
Sbjct: 244 VNPVTLLIMAMRHFRVL----YALASAQGGPQAGVQRLRPPLFGPRRDRMLRQAQNWSAD 299

Query: 305 LVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
            +   L  +       R   ++     ++ +  + +A  + + 
Sbjct: 300 RLEAALGMLMDTDLSIRSAGQRAPAMALVERGFVRLAWLSNRR 342


>gi|167759412|ref|ZP_02431539.1| hypothetical protein CLOSCI_01759 [Clostridium scindens ATCC 35704]
 gi|167662969|gb|EDS07099.1| hypothetical protein CLOSCI_01759 [Clostridium scindens ATCC 35704]
          Length = 326

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 113/312 (36%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L  +  ++  K +     D  +           N +   +   +   F+
Sbjct: 15  PAYLLYGEEAYLKKQYKDKLTKAMLPE-SDTVNYAYYEGKGT--NPAELIDLAETMPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++I++EN    K     L + I         I   +E+ K   + K  +     + + 
Sbjct: 72  DRRLIVVENSGFFKNATPELADYIKNMPETACFIFVESEVDKRGKMYKAVKDKGRAVEMG 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               ++  L+  +   +    K I +   + L+A  G D      E++KL SY L    I
Sbjct: 132 --RQDEKTLLYWLAGMVKKEGKQIKESTARYLVAKTGTDMENLEKEMEKLFSYTLGQTEI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T Q V +I        I +++ A    +   A+      LA K P   +L+   ++F+LL
Sbjct: 190 TVQDVDEICTTQVTNKIFDMVEAVAAKQQKQALDYYYDLLALKEPPMRILYLLARQFKLL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318
            ++            +I +    +     + I  +  R ++K  +R  + +    +  + 
Sbjct: 250 MEVK-DLSGRGYDKPQIAKTAGLHPFVAGKYI--KQCRSFSKEELRSIMEEAANTEEMVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRLNDRMSVEL 318


>gi|149201528|ref|ZP_01878502.1| hypothetical protein RTM1035_03290 [Roseovarius sp. TM1035]
 gi|149144576|gb|EDM32605.1| hypothetical protein RTM1035_03290 [Roseovarius sp. TM1035]
          Length = 342

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 111/340 (32%), Gaps = 19/340 (5%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                     + YG+D   +           +  T      L  L A +++K+ +   + 
Sbjct: 13  AKPEAQRTGILIYGADAMRVALRRQEMLAALLGPTADAEMRLTRLPAGDLRKDPAALLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + +   F   +   +E+ + +      L  +      +  II+ +  +K  + +RK  E 
Sbjct: 73  VKAQGFFPGPRAAFVED-ANDTAADAILAALSDWQAGDAQIIVTAGALKATSKIRKAFES 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNEL 188
             +  A+  Y D        IE +L           +  +   +      GD    R  +
Sbjct: 132 HPNAYAVGIYDDPPSREE--IEATLARAGLRDVPGPVMADLTALARDLDPGD---FRQTI 186

Query: 189 QKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +KL+ Y L D   +    +      +    +++I+N   +G+      +     A     
Sbjct: 187 EKLALYKLGDATPLNAADIAACAPASTEADLDDILNIVAEGRSAEIGPVMRRLKAQGTQP 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L  G  + F+ L               + I +    I   +R+ +    + W    ++
Sbjct: 247 VGLCIGATRHFRAL----YTAASDPGGAAQGIARMRPPIFGPRRDRMLRQAQGWGAERLQ 302

Query: 308 ETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACKN 345
           + L  +       R   ++  +  ++ + ++ +A  A   
Sbjct: 303 QALTILTDTDLTLRSAGQRAPDMALVERALIRLAMLATAR 342


>gi|126728333|ref|ZP_01744149.1| hypothetical protein SSE37_20122 [Sagittula stellata E-37]
 gi|126711298|gb|EBA10348.1| hypothetical protein SSE37_20122 [Sagittula stellata E-37]
          Length = 341

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 119/347 (34%), Gaps = 21/347 (6%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  F +K            + YG D   +  +              +   +  LN  E++
Sbjct: 8   ADAFFRKPDPKAAG----VLIYGEDTMRVAMKRQELVANLTGPGADEEMRITRLNGAELR 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKK 123
           ++ +   + + +T  F   + +++E       V D L+  +      +  I+     +  
Sbjct: 64  RDPAALLDAVKATGFFPGARAVVVEEAGD--GVTDALKAALDDWQEGDATIVATGGSLAA 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANLGGDR- 181
            + LRK+ E      A + Y  N       IE  L     S + ++A   L   LG D  
Sbjct: 122 KSALRKLFEGSKRAFAAALY--NNALTRSEIEAELKRAGISEVGRDAMGAL-EGLGRDLT 178

Query: 182 -IASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  L+K++ Y L+D   ++   V+     +    ++++ +   +G+      +   
Sbjct: 179 PGDFRMTLEKIALYKLDDSAPLSVAEVELNAPASFEADMDDVFHILAEGRTGEIAPVMQR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
                +    LL    + F++L  +            + I +    +   +R+ +    +
Sbjct: 239 LSGQGVAPVTLLIMGTRHFRMLYTLASAPGG----PAQGIGRLRPPVYGPRRDRILRQAQ 294

Query: 300 IWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQTACK 344
            W  + +   L  +       R   +K     ++ +  + +A  A +
Sbjct: 295 GWRLDRLESALELLMDADLTLRSAGQKAPAFALVERAFVRLAHLARR 341


>gi|154502623|ref|ZP_02039683.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149]
 gi|153796815|gb|EDN79235.1| hypothetical protein RUMGNA_00436 [Ruminococcus gnavus ATCC 29149]
          Length = 337

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 119/315 (37%), Gaps = 11/315 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +   +F K +     D  +        ++  I    +   +   F++
Sbjct: 28  IYLLYGEENYLKKQYKERFVKAMLPQ-GDTMNYAYYEGKGVE--IREVIDLAETLPFFAE 84

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I+ EN    K     L E I         I    E+ K + L K  +    ++ +  
Sbjct: 85  RRLIVFENTGLFKSSGADLAEYIKTMPETTYFIFVEEEVDKRSKLYKAVKAKGHIVELPF 144

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   I  ++    K IS  +    L  +G D    + EL+KL  Y L   +IT
Sbjct: 145 --QDESTLKRWILGNVRREGKQISDASVGYFLGKVGTDMQNIQGELEKLFCYTLHRDVIT 202

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + +  +  +    +I E++NA  + K   A+ L    LA K P   +L   ++++++L 
Sbjct: 203 PEDIDAVCINQIGNHIFEMVNAVAEKKQRKALDLYYELLALKEPPMRILFLLVRQYRIL- 261

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR- 321
             H+         +K I   +  + P       E  R +    +R  L   +      R 
Sbjct: 262 -FHVQSLQKKGYGKKEI-AAKAGLHPFAAGKYMEQTRYFKSEELRAVLE--ESADLEERV 317

Query: 322 KKKYLEKNIIFQTIL 336
           K   L   +  +  L
Sbjct: 318 KTGRLTDTLAVELFL 332


>gi|70732746|ref|YP_262509.1| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf-5]
 gi|68347045|gb|AAY94651.1| DNA polymerase III, delta subunit [Pseudomonas fluorescens Pf-5]
          Length = 345

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 124/305 (40%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G D  L  E  +  +  +     D   +   +A     +  T      S SLF+
Sbjct: 18  PIYVISGDDPLLCQEAADAIRSAVRQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S S++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDANQLPQWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALSR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + +LL  + +      +  +K+  +    +   ++ ++ ++L+ ++     + L    +I
Sbjct: 254 ELRLLANLALQF-SQGVPLDKVFSQARPPVWDKRKPLMSKALQRYSAQRWGQLLLDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|225573010|ref|ZP_03781765.1| hypothetical protein RUMHYD_01201 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039624|gb|EEG49870.1| hypothetical protein RUMHYD_01201 [Blautia hydrogenotrophica DSM
           10507]
          Length = 327

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 113/315 (35%), Gaps = 9/315 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  L  +   +    +     D  +        I+       +   +   F+
Sbjct: 15  PVYLLFGEEAYLRQQYKQKLLDALMPE-EDTMNYSRYEGKGIE--PREIIDLAETMPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++IL+E+    K   + L E   +      +I   +E+ K   + K A+    V   +
Sbjct: 72  DRRVILLEDTGFFKNKCEELAEYFKQLPDYLCMIFVESEVDKRGKMYKAAKAAGRVTEFA 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               N   L   + + L    K I++   ++ L   G D    R EL+KL  Y +   ++
Sbjct: 132 --VQNIQTLTRWVLQMLGREGKRITQRDMELFLTKTGTDMGNIRMELEKLLVYTMGREIV 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           +   ++ +        I +++ A  +     A+ L +  L  K P   +L    ++F  L
Sbjct: 190 SSADIEAVCTTQTSNKIFDMVRAVTERNQKKALDLYNDLLTLKEPPMRILFLLAKQFNQL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                + E      E   Q        + RN   + ++ +  + +R+ +        L  
Sbjct: 250 MITKEMSEKGYGQPEIASQLGVPP--FVVRNYF-QIVKRYRLSQLRQAVEDFTEAEELV- 305

Query: 322 KKKYLEKNIIFQTIL 336
           K   L   +  + ++
Sbjct: 306 KTGRLGDVLSVELLI 320


>gi|167035838|ref|YP_001671069.1| DNA polymerase III subunit delta [Pseudomonas putida GB-1]
 gi|166862326|gb|ABZ00734.1| DNA polymerase III, delta subunit [Pseudomonas putida GB-1]
          Length = 351

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 117/305 (38%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 24  PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 80

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + +++I   ++  +    K  +       
Sbjct: 81  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDGSAQKTKWGKALIEGAH 140

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 141 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 200

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 201 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 259

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + + L  +   +    +  +K   +    +   +R ++ ++L+  +      + +   +I
Sbjct: 260 ELRQLAGL-AQQFSQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 318

Query: 314 DHRIH 318
           D +I 
Sbjct: 319 DAQIK 323


>gi|170719811|ref|YP_001747499.1| DNA polymerase III subunit delta [Pseudomonas putida W619]
 gi|169757814|gb|ACA71130.1| DNA polymerase III, delta subunit [Pseudomonas putida W619]
          Length = 351

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 24  PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADASF---DWGTLLQAGASLSLFA 80

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + ++++   ++  +    K  +     + 
Sbjct: 81  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLVSLPKLDGSAQKTKWGKALIEGSH 140

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 141 CQFIQIWPVDAQQLPQWISQRLAQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLA- 199

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +   +T + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 200 DGSQVTVETVQAAVADSARFDVFGLVDAILNGEAVHALRMLEGLRGEGVEPPVILWALAR 259

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + +LL  +        +  +K   +    +   +R ++ ++L+  +      + +   +I
Sbjct: 260 ELRLLAGLSQQF-SQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 318

Query: 314 DHRIH 318
           D +I 
Sbjct: 319 DAQIK 323


>gi|291563976|emb|CBL42792.1| DNA polymerase III, delta subunit [butyrate-producing bacterium
           SS3/4]
          Length = 325

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 119/315 (37%), Gaps = 13/315 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V++ +G +  L+     + ++ I       ++       ++++ IS      ++   F
Sbjct: 14  RRVYLLFGDEPFLVNSYKKRLREAIIGDDTMNYNYFEGKGPDVKEIIS----LADTMPFF 69

Query: 81  SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++++++LI+     K      L   I +   +  ++   NE+ K N L K  +       
Sbjct: 70  AERRLVLIDGSGFFKSSAPEELVNYIPEIPESTCMVFVENEVDKRNKLYKKVKDNGYAAE 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +     +   LM      L    K I+++  +  +   G D    R EL+KL  Y +   
Sbjct: 130 LK--KQDADQLMRWAAGILSKDGKKITRQVMEYFMERTGDDMENIRMELEKLICYTMGRE 187

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +IT++ V+ +        I E++ A + G    A+ L +  L  K P   ++    ++F 
Sbjct: 188 VITKEDVEVVGTVHVTNRIFEMVTAIVAGNTRKAMDLYEDLLTLKEPPMRIMFLIAKQFN 247

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316
            L ++  +        E   +        +   ++ ++ R + +  +   +    + +  
Sbjct: 248 QLLQVKELAGKGAQKSEIASRVKVPP--FVAGKLMAQA-RAFTREQILSYVEFCVESEEA 304

Query: 317 IHLARKKKYLEKNII 331
           +   R    L   ++
Sbjct: 305 VKTGRLSDRLAVELL 319


>gi|225027579|ref|ZP_03716771.1| hypothetical protein EUBHAL_01836 [Eubacterium hallii DSM 3353]
 gi|224955095|gb|EEG36304.1| hypothetical protein EUBHAL_01836 [Eubacterium hallii DSM 3353]
          Length = 327

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 112/288 (38%), Gaps = 6/288 (2%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V++  G +  L+        KN  I   D  +       +I  +++T      +   F
Sbjct: 14  HKVYLLTGDEPYLVL-QAKHMLKNAMIKEGDTMNYAAFTDGKI--DLNTLQELAFTYPFF 70

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           S+K+++L++     K   D    I+        III   E+ K + + K  +K   V   
Sbjct: 71  SEKRLLLLDGTGILKTGKDEFVSIMENMPETTCIIICEPEVDKRSKVYKWIKKNGYVGEF 130

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                 +  L+  I   L   +K I +   +  L   G D    +NE+ KL +Y  +   
Sbjct: 131 LKKNQTEKVLLRWIAALLGKEKKQIRENNARYFLQKTGDDMFQIKNEIDKLIAYAGDREE 190

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT+  +  +        I ++++A  +     A+   +  +  K P   +L   ++++++
Sbjct: 191 ITQADIDAVASGEVQDKIFDLVDAIARKNKAAALSYYNDLILLKEPPMHILFLIVRQYRI 250

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           L  I           + I +        +++N  ++ LR + + ++ +
Sbjct: 251 LHII-ANMRGLRKPDDAIAKTAGIPRFAIRKN--EQQLRGYGEKMLEK 295


>gi|210609806|ref|ZP_03288113.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787]
 gi|210152733|gb|EEA83739.1| hypothetical protein CLONEX_00297 [Clostridium nexile DSM 1787]
          Length = 326

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 126/314 (40%), Gaps = 17/314 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNIS---ITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +++ YG +  L      Q+K  +    +   D  +        I        +   +   
Sbjct: 16  IYLLYGEEAYLK----KQYKDKLHYAIVPPDDTMNYAYYEGKGINAKE--VIDLAETLPF 69

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F+++++I++EN    K     L + I +      +I   +EI K   L K A+    V+ 
Sbjct: 70  FAERRLIILENSGFFKNASPELSDYIKELPETTSMIFVESEIDKRGKLYKAAKDKGRVVE 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +     ++  L+  I  S+    K ++++  +  L  +G D    + EL+KL  Y L+  
Sbjct: 130 LG--RQDESTLLRWIAGSVRRENKQVTEQVIRFFLTKVGTDMENIQRELEKLFCYTLDKS 187

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT Q V++I        I +++NA  + +   A+      +A K P   +L    ++F+
Sbjct: 188 EITAQDVEEICTTQITNQIFDMVNAVAEKQQRKALDYYYDLVALKEPPMRILFLLTRQFR 247

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316
           LL ++    +      ++I  K   +   + +   QE  R ++   +RE +     ++  
Sbjct: 248 LLLEVK-DMDKRGYPRKEIASKVGLHPFVVGK--YQEQARAFSSKALREIIEDSVDMEEA 304

Query: 317 IHLARKKKYLEKNI 330
           +   R    L   +
Sbjct: 305 VKTGRLSDMLGVEL 318


>gi|148549873|ref|YP_001269975.1| DNA polymerase III subunit delta [Pseudomonas putida F1]
 gi|148513931|gb|ABQ80791.1| DNA polymerase III, delta subunit [Pseudomonas putida F1]
          Length = 345

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 117/305 (38%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + +++I   ++  +    K  +       
Sbjct: 75  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGAH 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + + L  +   +    +  +K   +    I   +R ++ ++L+  +      + +   +I
Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|313500775|gb|ADR62141.1| HolA [Pseudomonas putida BIRD-1]
          Length = 345

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 118/305 (38%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + +++I   ++  +    K  +     T 
Sbjct: 75  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGTH 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + + L  +   +    +  +K   +    I   +R ++ ++L+  +      + +   +I
Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|253579922|ref|ZP_04857190.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848921|gb|EES76883.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 328

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 120/314 (38%), Gaps = 9/314 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L  +      K ++    D  +        I  ++    +   +   F++
Sbjct: 16  VYLLYGEEAYLKQQYKQNLVKALNPD-GDTMNFNHYEGKGI--DVKQLIDLCETMPFFAE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++L+E+    K   + L + + +      ++    E+ K N + K  +   S+     
Sbjct: 73  RRVVLLEDTGFFKNKCEELADYMKELPDYLYLVFAETEVDKRNRMYKAVKACGSIA--EF 130

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  LM      L    K I++   ++LL   G D    R E++KL SY     ++T
Sbjct: 131 IRQDEKTLMRWAAGILGKAGKKITQRDMELLLTKTGTDMGNLRMEMEKLISYTEGRDVVT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + +++I        I +++ A  +     A+ L    L  K P   +L    ++++ L 
Sbjct: 191 AEDIEEICTTQTTNRIFDMVRAVTEKNQKRALELYYDLLTLKEPPMRILFLLAKQYRQL- 249

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            +      + ++  +I  K       ++   +    R +  + + + +         + K
Sbjct: 250 LLAKQFAAAGLAQTEIASKLGVPGFVVR--NITTCARAYTISELEQAVKDFVDAE-ESVK 306

Query: 323 KKYLEKNIIFQTIL 336
              LE  +  + ++
Sbjct: 307 TGRLEDKLSVELLI 320


>gi|26991476|ref|NP_746901.1| DNA polymerase III subunit delta [Pseudomonas putida KT2440]
 gi|24986554|gb|AAN70365.1|AE016678_6 DNA polymerase III, delta subunit [Pseudomonas putida KT2440]
          Length = 345

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 116/305 (38%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVVSGDDPLLCQEAADAIRNAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + +++I   ++  +    K  +       
Sbjct: 75  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLISLPKLDSSAQKTKWGKALIEGAH 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 135 CQFIQIWPVDVHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 GSQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + + L  +        +  +K   +    I   +R ++ ++L+  +      + +   +I
Sbjct: 254 ELRQLAGLAQQF-SQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|325276213|ref|ZP_08142012.1| DNA polymerase III subunit delta [Pseudomonas sp. TJI-51]
 gi|324098642|gb|EGB96689.1| DNA polymerase III subunit delta [Pseudomonas sp. TJI-51]
          Length = 345

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  ++       D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVVSGDDPLLCQEAADAIRQAARQQGFDERQVFSADANF---DWGTLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E       + ++++   ++  +    K  +       
Sbjct: 75  QRRLLELRLPSGKPGDKGAAALMEYCANPAEDTLLLVSLPKLDGSAQKTKWGKALIEGAH 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 135 CQFIQIWPVDAHQLPQWINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 GNQ-ITVETVQSAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVVLWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLVRETLHKI 313
           + + L  +   +    +  +K   +    +   +R ++ ++L+  +      + +   +I
Sbjct: 254 ELRQLAGL-AQQFSQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAQLLQDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|104783756|ref|YP_610254.1| DNA polymerase III subunit delta [Pseudomonas entomophila L48]
 gi|95112743|emb|CAK17471.1| DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudomonas entomophila L48]
          Length = 345

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G D  L  E  +  +        D   +   +A     +         S SLF+
Sbjct: 18  PVYIVSGDDPLLCQEAADAIRGAARQQGFDERQVFSADANF---DWGNLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  QRRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALIEGEH 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S  ++A  ++ A + G+ +A+  E++KL     
Sbjct: 135 CQFVQIWPVDAQQLPQWINQRLSQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 195 GNQ-ITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKI 313
           + +LL  + +      +  +K   +    +   +R ++ ++L+  +      + +   +I
Sbjct: 254 ELRLLAGLALQF-SQGVPLDKAFSQARPPVWDKRRPLVSKALQRLSAQRWAMLLQDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|238917138|ref|YP_002930655.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750]
 gi|238872498|gb|ACR72208.1| DNA polymerase III subunit delta [Eubacterium eligens ATCC 27750]
          Length = 324

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 12/312 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG ++ L  +  ++ K  I+    D  +    ++     ++    +   +   F++
Sbjct: 16  VYLLYGEEEYLKKQYRDRLKNAIAGD--DTMNYSYYDSD--NASVKDIIDVCETLPFFAQ 71

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           K+++++EN    K   D L + I       +I++   ++ K N + K  +    V  +  
Sbjct: 72  KRLVIMENTGFLKSSNDELADYIKHIPDYLVIVMVEKDVDKRNKVYKAVDSVGYVCEMK- 130

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
            P     L   I   L      IS+EA  ++L   G      R E++KL SYC    ++T
Sbjct: 131 -PQTTATLEKWIAGLLAKDNLKISREACDLILDKTGAGMDYIRQEIEKLVSYCQGRNVVT 189

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+ +       +I ++I+A    K   A+ L    L  K P   +L+  +++F  + 
Sbjct: 190 AEDVEKVCATQTTSHIFDMISAIANKKQQQALDLYYDLLELKEPPMRILYLIVRQFNGIL 249

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
           ++  +     IS ++I  K       + +   Q   + +  N + + L+   K +  +  
Sbjct: 250 QVKDLM-SRGISGKEIASKIGAAPFVVGK--YQAQAKYFEMNTLLDALNECAKTEEAVKQ 306

Query: 320 ARKKKYLEKNII 331
            R    L   +I
Sbjct: 307 GRLNDRLGVELI 318


>gi|323483818|ref|ZP_08089196.1| hypothetical protein HMPREF9474_00945 [Clostridium symbiosum
           WAL-14163]
 gi|323402840|gb|EGA95160.1| hypothetical protein HMPREF9474_00945 [Clostridium symbiosum
           WAL-14163]
          Length = 323

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 18/316 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWNEINSTS 78
            V++ YG +  L      + K+ ++      ++ F    L+  E+        +   +  
Sbjct: 15  KVYLLYGEESFLKQSYKKKLKEAVAGDDTMNYNYFEGKGLDVNELIS----LSD---TMP 67

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            FS K++I+IE+    K   + L + +        I+   + + K N L K  ++     
Sbjct: 68  FFSDKRLIIIEDSGFFKTSSEALADYLPMIPDTTCIVFVEDGVDKRNRLFKKVKELGHAA 127

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     +   L       L    + I+     + L   G D    R EL+KL SY +  
Sbjct: 128 EMK--RQDSAQLARWAGTILAQNGRKITGSTMNLFLERTGDDMENIRMELEKLISYTMGS 185

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++T + V+ +        I +++NA +  K   A+ L +  L  K P   +L    ++F
Sbjct: 186 DVVTTEDVEAVTTVQVTNKIFDMVNAIVTRKTRLAMDLYEDLLTLKEPPMRILFLIARQF 245

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDH 315
             L  +             I  K +       +  +      + +  +    +   + + 
Sbjct: 246 NQLLLVK-EMTAKGTDRGTIASKLKIPPFVAGK--VSAQAGAFTREQILSYVKGCVEAEE 302

Query: 316 RIHLARKKKYLEKNII 331
            +   +    +   ++
Sbjct: 303 AVKTGKMNDRMAVELL 318


>gi|283795071|ref|ZP_06344224.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1]
 gi|291077412|gb|EFE14776.1| DNA polymerase III, delta subunit [Clostridium sp. M62/1]
          Length = 415

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 12/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G ++ L      + ++ I+      ++      +++++      +  N+   FS
Sbjct: 107 RFYLLFGEEEFLKQSYKKRLREAIAGDDTMNYNYFEGKGMDVRE----LISLANTMPFFS 162

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++IL+E+    K   D L E +        ++   + + K N L K  ++      + 
Sbjct: 163 ERRLILVEDSGFFKAASDELVEAMADIPDTTCMVFVESAVDKRNRLYKKVKELGYAAELK 222

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               +   L       L    + I+    ++ L   G D     +EL+KL SY +   ++
Sbjct: 223 --KQDASQLARWAAGILARNGRKITAATMELFLEKTGDDMETISSELEKLISYTMGREVV 280

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T + V+ +        I E++NA + GK   A+ L +  L  K P   +L    ++F  L
Sbjct: 281 TAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKEPPMRILFLIARQFNQL 340

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIH 318
                + +          +        +   ++ ++ R + +  +    E   + +  + 
Sbjct: 341 FLTKELLDSGADRAAIASKLKVPP--FVAGKLMPQA-RSFTREQIAGCVEACVEAEEAVK 397

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 398 TGRLGDRMAVEL 409


>gi|254236882|ref|ZP_04930205.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa C3719]
 gi|126168813|gb|EAZ54324.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa C3719]
          Length = 345

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  ++         F    +   E   +         S SLF+
Sbjct: 18  PVYVISGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K++I +   +     K    L+E + +   + ++++   ++  +    K A+      +
Sbjct: 75  EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGNA 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S S EA +++ A + G+ +A+  E++KL     
Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  I    V+  + D+    +  +I+A + G+  +A+ + +      +    +L G  +
Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +LL  +   +    I  EK   +    +   +R +L  +L+  + +   + L    
Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310


>gi|109897885|ref|YP_661140.1| DNA polymerase III, delta subunit [Pseudoalteromonas atlantica T6c]
 gi|109700166|gb|ABG40086.1| DNA polymerase III, delta subunit [Pseudoalteromonas atlantica T6c]
          Length = 340

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 130/324 (40%), Gaps = 18/324 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G +       INQ ++  +    D    +V +A     + +T      + SLFS
Sbjct: 18  PFYLIFGDEPQQKLTAINQIRELATEQGFDERQTLVADAQF---DWATLLEATQTLSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            ++ I +E        +    L E+  +N  + +++I   +I K+    K  +       
Sbjct: 75  SRQYIELELPTGKPGTQGSKILTELSAQNNPDILLVIHGAKIGKDVQNSKWFKAIDKHGT 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            + CYP     L   + E +      ++ +  ++L     G+ +A+  E++KL      +
Sbjct: 135 YVPCYPLEGNALQQWLMEQMRTQGLHVTPDVTRLLAEYCEGNLLAASQEIEKLCL-LYPN 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
              T + V+  + D     + ++I+  + G    ++ +     +  +  + ++    +++
Sbjct: 194 GNPTIEEVEQAVVDQSRYNVFQLIDVLLAGDSQKSVKMLYRLESEGVEPNIIMWALTREW 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI---DH 315
           Q L  +       +    + I   +  I   ++ +   +L+  +   +++  HK+   D 
Sbjct: 254 QTLRALQA-----SKQAGQAINWNQHRIWKNRQGMYLSALQRLSPIHMQQLQHKLNIMDS 308

Query: 316 RIHLAR-KKKYLEKNIIFQTILYI 338
            +  ++ ++ Y+E  +    +L+I
Sbjct: 309 ALKQSQVERPYVE--LCHLCLLFI 330


>gi|302671159|ref|YP_003831119.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus
           B316]
 gi|302395632|gb|ADL34537.1| DNA polymerase III delta subunit HolA [Butyrivibrio proteoclasticus
           B316]
          Length = 336

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 5/251 (1%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L  +  ++  K ++       +        +  N     +   +    S
Sbjct: 26  RCYLVYGEEAYLRNQNRDKLVKALAGDPAS-MNFSRYEGDSL--NPGEIIDMAETMPFLS 82

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++IL+EN    K     L E +         I    E+ K   + K          I 
Sbjct: 83  DKRVILVENSGFFKSGCAELAEYLKNPSETTFFIFAEKEVDKRKDIYKTV--SKIGFEIC 140

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           C   ++  L   I   +    K IS  A   L+  +G D      EL+KL  YCL+   I
Sbjct: 141 CDEQDERMLSSWIASKVKSEDKIISPRALSFLIDRVGTDMSNISTELEKLICYCLDRSEI 200

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           TE+ ++ +  +     I  + +A ++     AI L    LA K P   +L    ++F L+
Sbjct: 201 TEEDIEAVCANWLTNRIFAMTDAIVEKNQKRAIDLYYDLLALKEPPAKILALITRQFNLM 260

Query: 262 EKIHIIKECSN 272
            ++  + E   
Sbjct: 261 LQVKEMNENHR 271


>gi|89052900|ref|YP_508351.1| DNA polymerase III, delta subunit [Jannaschia sp. CCS1]
 gi|88862449|gb|ABD53326.1| DNA polymerase III, delta subunit [Jannaschia sp. CCS1]
          Length = 343

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 109/333 (32%), Gaps = 22/333 (6%)

Query: 25  IFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           + +G D   +  +  +     +     +   L  +   +++ + +   + + +   F   
Sbjct: 23  LIFGDDAMRVALKRQDLLAALLGAAAEEEMRLTRMTGADLRSDSAGLLDAVKAVGFFPGP 82

Query: 84  KIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + +L+E  +    K      EE       +  II  +  +   + LRK+ E      A +
Sbjct: 83  RAVLVEGATDGLAKVFTAAFEEW---QDGDAQIIATAGRLTAKSALRKVFEGNKRAYAAA 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKS-ISKEAKQILLANL----GGDRIASRNELQKLSSYCL 196
            Y D        IE+ L     +   +EA   L         GD    R  + KL  Y  
Sbjct: 140 IYDDPPGRAE--IEDMLKAAGITNTDREAMVDLEGLARSIGPGD---FRQMVDKLGLYKR 194

Query: 197 EDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            D   +    ++ +   T    +++I++AT + +      +            +L    L
Sbjct: 195 GDATPVLPADIEAVAPLTREAELDDILHATAEAETGAIGPILVRLKQQGTTPVSLCIAAL 254

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + F+ L       +         +Q     +   +R+ +      W ++ +   L  +  
Sbjct: 255 RHFRALHSAAAHPDG----PAAGLQAMRPPVFGPRRDRMARQASRWGQSALEAALSMLVE 310

Query: 316 RIHLARK-KKYLEKNIIFQTILYIAQTACKNNN 347
                R      +  ++ +T++ +A    +   
Sbjct: 311 TDLTLRSASTAPQMAVMERTLIRLAMLPGRGRR 343


>gi|197301864|ref|ZP_03166933.1| hypothetical protein RUMLAC_00590 [Ruminococcus lactaris ATCC
           29176]
 gi|197299094|gb|EDY33625.1| hypothetical protein RUMLAC_00590 [Ruminococcus lactaris ATCC
           29176]
          Length = 328

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 127/324 (39%), Gaps = 12/324 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L  +   +F K +     D  +        I   +    +   +   F++
Sbjct: 16  VYLLYGEEGYLKKQYKKRFIKAMIPE-GDTMNYAHYEGKNI--PVKEVIDLAETMPFFAE 72

Query: 83  KKIILIENLSTEKKVL-DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           K++I+ EN    K      L + I +       I    E+ K N L K         A++
Sbjct: 73  KRLIVFENTGFFKTAAGAELADYIKEMPETTYFIFVEEEVDKRNKLYKAVNTKGYAAALT 132

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               ++  L   I + L    K +S       L  +G D    + EL+K+  Y ++   +
Sbjct: 133 --MQDEEVLKRWIGQILRREGKEMSGATISYFLGKVGTDMENIQRELEKVICYGIDKATL 190

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T + +  +       +I ++++A   G    A+ L    +A K P   +L+   ++++ L
Sbjct: 191 TREEIDAVCVTQLSNHIFDMVDAVAAGNQRKALDLYYELIALKEPPMRILYMLTRQYRSL 250

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             +  +        ++I  K   +   + ++++    + +    +R+++ +    +  A 
Sbjct: 251 YFVKALM-NQGYGKKEIASKAGLHPFVVGKSMV--QCKRFRMGQLRQSMEE-GAGLEQAV 306

Query: 322 KKKYLEKNIIFQTILYIAQTACKN 345
           K   L +N+  +  L+I + + K 
Sbjct: 307 KTGTLSENLAVE--LFIVKQSEKR 328


>gi|107103507|ref|ZP_01367425.1| hypothetical protein PaerPA_01004577 [Pseudomonas aeruginosa PACS2]
 gi|116052028|ref|YP_789129.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889728|ref|YP_002438592.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa LESB58]
 gi|254242675|ref|ZP_04935997.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 2192]
 gi|296387482|ref|ZP_06876957.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PAb1]
 gi|313109430|ref|ZP_07795390.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 39016]
 gi|115587249|gb|ABJ13264.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126196053|gb|EAZ60116.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 2192]
 gi|218769951|emb|CAW25713.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa LESB58]
 gi|310881892|gb|EFQ40486.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa 39016]
          Length = 345

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  ++         F    +   E   +         S SLF+
Sbjct: 18  PVYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K++I +   +     K    L+E + +   + ++++   ++  +    K A+      +
Sbjct: 75  EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGNA 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S S EA +++ A + G+ +A+  E++KL     
Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  I    V+  + D+    +  +I+A + G+  +A+ + +      +    +L G  +
Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +LL  +   +    I  EK   +    +   +R +L  +L+  + +   + L    
Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310


>gi|302385261|ref|YP_003821083.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1]
 gi|302195889|gb|ADL03460.1| DNA polymerase III, delta subunit [Clostridium saccharolyticum WM1]
          Length = 323

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 124/314 (39%), Gaps = 14/314 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L     NQ K  ++      F+      +++++ IS   +   +   F+
Sbjct: 15  PVYLLYGEEAFLKNSYKNQMKAAVTAGDTMNFNQFEGKGIDVREIIS-LGD---TMPFFA 70

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +K++IL+EN    K   + +   + +      +I   +E+ K + + K  ++      + 
Sbjct: 71  EKRLILVENSGFFKSASEEMASYLSQIPDTTCLIFVESEVDKRSKMFKKVKELGYAAEME 130

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               +   L       L    K I+    ++ L   G D    R EL+KL SY L   +I
Sbjct: 131 --RQDMAQLSRWAGTLLSREGKKITGHTMELFLNMTGDDMENIRMELEKLISYTLGREII 188

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T++ V+ I        I +++ A +  +   A+ L +  L  K P   +L    ++F  L
Sbjct: 189 TDEDVETICTVRTTNKIFDMVAAIVNRQTKKAMDLYEDLLTLKEPPMRILFLIARQFNQL 248

Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRI 317
            ++  +     +    I  K +          I+ ++ R +++  +   ++   + +  +
Sbjct: 249 LQVKELM-GKGMDKGGISSKLKIPP--FAAGKIMPQA-RTFSREQILSYVNLCVEAEEAV 304

Query: 318 HLARKKKYLEKNII 331
              R    +   ++
Sbjct: 305 KTGRLNDRMAVELL 318


>gi|323692782|ref|ZP_08107009.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323503096|gb|EGB18931.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 323

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 18/316 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWNEINSTS 78
            V++ YG +  L      + K+ ++      ++ F    L+  E+        +   +  
Sbjct: 15  KVYLLYGEESFLKQSYKKKLKEAVAGDDTMNYNYFEGKGLDVNELIS----LSD---TMP 67

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            FS K++I+IEN    K   + L + +        I+   + + K N L K  ++     
Sbjct: 68  FFSDKRLIIIENSGFFKTSSEALADYLPMIPDTTCIVFVEDAVDKRNRLFKKVKELGHAA 127

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     +   L       L    + I+     + L   G D    R EL+KL SY +  
Sbjct: 128 EMK--RQDSAQLARWAGTILAQNGRKITGSTMNLFLERTGDDMENIRMELEKLISYTMGS 185

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++T + ++ +        I +++NA +  K   A+ L +  L  K P   +L    ++F
Sbjct: 186 DVVTTEDMEAVTTVQVTNKIFDMVNAIVTRKTRLAMDLYEDLLTLKEPPMRILFLIARQF 245

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDH 315
             L  +             I  K +       +  +      + +  +    +   + + 
Sbjct: 246 NQLLLVK-EMTAKGTDRGTIASKLKIPPFVAGK--VSAQAGAFTREQILSYVKGCVEAEE 302

Query: 316 RIHLARKKKYLEKNII 331
            +   +    +   ++
Sbjct: 303 AVKTGKMNDRMAVELL 318


>gi|330887938|gb|EGH20599.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 345

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 120/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDPLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPGDVGQLPQWIRQRLSQAGLAATQDALELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      +    +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVEPPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|15599184|ref|NP_252678.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PAO1]
 gi|9950180|gb|AAG07376.1|AE004816_12 DNA polymerase III, delta subunit [Pseudomonas aeruginosa PAO1]
          Length = 345

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 118/298 (39%), Gaps = 10/298 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  ++         F    +   E   +         S SLF+
Sbjct: 18  PVYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K++I +   +     K    L+E + +   + ++++   ++  +    K A+      +
Sbjct: 75  EKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLGLPKLDGSTQKTKWAKALIDGNA 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S S EA +++ A + G+ +A+  E++KL     
Sbjct: 135 AQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  I    V+  + D+    +  +I+A + G+  +A+ + +      +    +L G  +
Sbjct: 195 GNQ-IDAATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +LL  +   +    I  EK   +    +   +R +L  +L+  + +   + L    
Sbjct: 254 EIRLLAGL-SQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310


>gi|330811917|ref|YP_004356379.1| DNA polymerase III, delta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380025|gb|AEA71375.1| putative DNA polymerase III, delta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 345

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 122/305 (40%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYIISGDDPLLCQEAADAIRSAARQQGFDERQVFAADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K+++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGPQ 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S S++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDVSQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  + +A + G+  +A+ + +      +    +L    +
Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLTDAILNGEAAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + +LL  + +      +  +K   +    +   ++ ++ ++L+ ++ +   + L    +I
Sbjct: 254 ELRLLANLSLQY-SQGVPLDKAFSQARPPVWDKRKPLMSKALQRYSASRWAQLLLEAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|253699413|ref|YP_003020602.1| DNA polymerase III subunit delta [Geobacter sp. M21]
 gi|251774263|gb|ACT16844.1| DNA polymerase III, delta subunit [Geobacter sp. M21]
          Length = 329

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 114/314 (36%), Gaps = 12/314 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   K       +++ YG +  L+   + +  +         F+L V    E 
Sbjct: 1   MKPEEFSKAVDKGELA--PLYLLYGDEPYLVERAVKKLLERAVDPSFRDFNLNVFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + +    ++   +  +F++++++L++         ++ L   +        +I+++ ++ 
Sbjct: 59  KGDE--VFSAAQTLPMFAERRVVLVKKGGELSAGAMEILLSYVQDPCPGTCLILQAEKVD 116

Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                    +K    +     Y      L   + + +    K I   A ++L   +G + 
Sbjct: 117 GRKKFYAEFKKRGEAVEFKRPYE---NQLGPYVRDEVRAAGKKIDAAAAELLAYLVGNNL 173

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
               ++++KL  YC +   I    VK I+ DT V  + E  +A    ++  A+ +    L
Sbjct: 174 QELVSQIEKLCIYCGKKESIGVADVKAIVSDTKVESVFEFTDALGAKELPRALRMLTSLL 233

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                   +L    + ++ L ++  + +      E             K   + +  R +
Sbjct: 234 QDGEAPLRILGAVSRHYRQLWQVRELLDRRLPPAELAKASGINPYFLKK---VTDQARNY 290

Query: 302 NKNLVRETLHKIDH 315
               +++   ++  
Sbjct: 291 TVGELKQVFERMLE 304


>gi|146279167|ref|YP_001169326.1| DNA polymerase III, delta [Rhodobacter sphaeroides ATCC 17025]
 gi|145557408|gb|ABP72021.1| DNA polymerase III, delta subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 330

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 124/340 (36%), Gaps = 26/340 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEI 63
           E+ +++ K       +    + +G D   +  +        I         L  + A ++
Sbjct: 7   EAVRYLAKPDP----ARAGLLVFGQDAMRVALKRQEAILGLIGAEGAAEMRLTRIPASDL 62

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIK 122
           +++ +   + + +   F   + +L+E  +    + D + +++ +    +  +++ +  + 
Sbjct: 63  RRDPAALMDAMMAKGFFDGPRAVLLEEATD--GLADLIGKVLREWRPGDAQVVVTAGGLT 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-SISKEAKQILLANLGG-D 180
             + L+K+ E   + + I  Y D      + I+  L       I   A   L A     D
Sbjct: 121 GRSALKKLFEAHPNAVCIGLYDDPP--TREEIDTMLRQAGLGRIDPAAMAGLAALARDLD 178

Query: 181 RIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
               R  ++KL+ Y L D   ++   + ++   +    ++E+I+A  +G+          
Sbjct: 179 PGDFRQTVEKLALYKLGDPAPLSSADLAEMAPASIEAGVDEVIHAVAEGRRAEVSPFVRR 238

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A  + + AL  G ++ F+ L +I    E                    ++  +Q   R
Sbjct: 239 LEAQGVTAVALCIGAMRHFRSLHRIAAGAEPGRGG------------FNPRQERMQRQAR 286

Query: 300 IWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYI 338
            W  + + E L  +       R   +     ++ + ++ +
Sbjct: 287 QWGVSRLEEALTLLVETDLTLRSASRAPAMAVMERALIRL 326


>gi|291528954|emb|CBK94540.1| DNA polymerase III, delta subunit [Eubacterium rectale M104/1]
          Length = 336

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 117/312 (37%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG ++ LI +  ++  K + +   D  +        I +      +   +   F+
Sbjct: 15  KVYLLYGQERYLIKQYRDKLIKAM-VNEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++ILIE+     K  D L E +  +  +   I     + K + L K A K  + +   
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L   I   +    K +S+ A    +   G D      EL+KL  YC++  +I
Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+ +  +     + E+++A    K   A+ L    LA K P+  +++   ++F +L
Sbjct: 190 ELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318
             +           + I  K       +++   Q   R ++ + ++  +      +  + 
Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRMNDQMAVEL 318


>gi|291548510|emb|CBL21618.1| DNA polymerase III, delta subunit [Ruminococcus sp. SR1/5]
          Length = 364

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 117/325 (36%), Gaps = 11/325 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++ YG +  L  +      K ++    D  +        I  ++    +  ++   F++
Sbjct: 49  AYLLYGEEAYLKQQYKRNLVKALNPD-DDTMNFTRYEGKGI--DVRELLSLCDTMPFFAE 105

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++++L+E+    K   + L + +        ++   +E+ K + + K      +  +I  
Sbjct: 106 RRVVLLEDTGFFKNKCEELADYMKALPDYLYLVFCESEVDKRSRMYKAV---KACGSIGE 162

Query: 143 YPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           +   ++  LM      L    + I++   ++LL   G D    R EL+KL SY +   ++
Sbjct: 163 FKQQDEKTLMRWAAGILGKNGRRITQRDVELLLTMTGTDMGNIRMELEKLISYTVGRDVV 222

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T   ++ +        I +++ A  +     A+ L    L  + P   +L    ++F+ +
Sbjct: 223 TAADIQAVCTTQTTNKIFDMVRAVTEKNQKRALDLYYDLLTLREPPMRILFLLAKQFRQI 282

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                      +S  +I  K       ++   L    R +    +   +         A 
Sbjct: 283 CLTKK-MSQEGLSQTEIASKLGVPSFVVR--NLASCARSYTVEELENAVRDFVDAE-EAV 338

Query: 322 KKKYLEKNIIFQTILYIAQTACKNN 346
           K   L   +  + ++    +A    
Sbjct: 339 KTGTLGDVLSVELLIVKYSSARAVR 363


>gi|152989624|ref|YP_001346505.1| DNA polymerase III subunit delta [Pseudomonas aeruginosa PA7]
 gi|150964782|gb|ABR86807.1| DNA polymerase III, delta subunit [Pseudomonas aeruginosa PA7]
          Length = 345

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 118/297 (39%), Gaps = 10/297 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G +  L  E  +  ++         F    +   E   +         S SLF++
Sbjct: 19  VYVVSGDEPLLCQEACDAIRQACRER---DFGERQVFNAEANFDWGLLLEAGASLSLFAE 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           K++I +   +     K    ++E + +   + ++++   ++  +    K A+      A 
Sbjct: 76  KRLIELRLPSGKPGDKGAAIIQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGGAA 135

Query: 140 --ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I  +P +   L   I + L     S S EA +++ A + G+ +A+  E++KL      
Sbjct: 136 QFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAEG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +  I    V+  + D+    I  +I+A + G+  +A+ + +      +    +L G  ++
Sbjct: 196 NQ-IDAATVQAAVADSARFDIFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLARE 254

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            +LL  +   +    I  EK   +    +   +R +L  +L+  + +   + L    
Sbjct: 255 IRLLAGL-AQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSSRWNQMLRDAQ 310


>gi|291524724|emb|CBK90311.1| DNA polymerase III, delta subunit [Eubacterium rectale DSM 17629]
          Length = 336

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 118/312 (37%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG ++ LI +  ++  K + ++  D  +        I +      +   +   F+
Sbjct: 15  KVYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++ILIE+     K  D L E +  +  +   I     + K + L K A K  + +   
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L   I   +    K +S+ A    +   G D      EL+KL  YC++  +I
Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+ +  +     + E+++A    K   A+ L    LA K P+  +++   ++F +L
Sbjct: 190 ELSDVEAVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318
             +           + I  K       +++   Q   R ++ + ++  +      +  + 
Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRMNDQMAVEL 318


>gi|153854187|ref|ZP_01995495.1| hypothetical protein DORLON_01486 [Dorea longicatena DSM 13814]
 gi|149753236|gb|EDM63167.1| hypothetical protein DORLON_01486 [Dorea longicatena DSM 13814]
          Length = 326

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 112/312 (35%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L  +  ++  K I     D  +        I  N     +   +   F+
Sbjct: 15  PVYLLYGEEAYLKKQYRDRITKAIFPD-GDTVNYAYYEGKGI--NPGELIDLAETMPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           K+++I++EN    K     L + I         +   NE  K   + K  +    V+ ++
Sbjct: 72  KRRLIVVENSGFFKNATPDLADYIKTMPDTACFLFVENEADKRGKMYKAVKSKGRVVEMA 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               ++  L+  +  ++      I ++  + LL+  G D      EL+KL  YC+    I
Sbjct: 132 --RQDEKTLLYWVAGNVKKEGYKIKEQTARYLLSTTGTDMENLEKELEKLFCYCMGKEEI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               ++ I        I +++ A        A+      LA K P   +L+   ++F+LL
Sbjct: 190 EISDIEAICTTQITNKIFDMVEAVAMKNQKKALDYYYDLLALKEPPMRILYLLTRQFKLL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318
            ++  +          I +    +     + +  +  R + K  +R  L      +  + 
Sbjct: 250 LEVKDLV-GKRYDKSSIAKTVGLHPFVAGKYM--QQCRTFEKKELRNILEEAVDTEEMVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRLNDVMSVEL 318


>gi|313905056|ref|ZP_07838426.1| DNA polymerase III, delta subunit [Eubacterium cellulosolvens 6]
 gi|313470126|gb|EFR65458.1| DNA polymerase III, delta subunit [Eubacterium cellulosolvens 6]
          Length = 325

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 114/308 (37%), Gaps = 5/308 (1%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ YG ++ L  +  +   K +     D  +       ++  +     ++  +   F
Sbjct: 14  RQTYLLYGEEEYLKSQYRDLLLKALVPD-RDSMNYNHYAGKDV--DEGAIISQAETMPFF 70

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           + +++I+IE+    KK  + L + + +     ++I   +E+ K N L K   K    +  
Sbjct: 71  ADRRVIVIEDSGLFKKKSEKLADYMAELPDYLVMIFVESEVDKRNRLFKAVGKSGRTVVF 130

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                N+  L   I + +    K I++   Q  L   G D     +EL+KL +Y ++  +
Sbjct: 131 D--TQNEETLTRWILQRMGKEGKKITRNDMQHFLEVTGTDMANINSELEKLLAYTMDSDV 188

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT + +  +        I E++ A  + +   A+      LA K P   +L+   ++F +
Sbjct: 189 ITGEDIDAVCAPQISNKIFEMVRAVAEHRQKEALDYYYDLLALKEPPMRILYFLAKEFNM 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +  +      + E   +      +  K   L  +        +      ++  +   
Sbjct: 249 LLVVKTMAVAGFANREIASKIGRPPFVVSKSMGLIRNYTSAQLENIVRDFTDMEEAVKTG 308

Query: 321 RKKKYLEK 328
           R    +  
Sbjct: 309 RMTDTVSV 316


>gi|222055266|ref|YP_002537628.1| DNA polymerase III, delta subunit [Geobacter sp. FRC-32]
 gi|221564555|gb|ACM20527.1| DNA polymerase III, delta subunit [Geobacter sp. FRC-32]
          Length = 330

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 118/326 (36%), Gaps = 13/326 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   K        +  YG +  LI + + +    I       F+  +    E 
Sbjct: 1   MKPDEFTRAVDKGSIA--PFYYLYGDEPYLIEKGVKRLLDRIVSADFRDFNFNIFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           +      ++   +  +F+ ++ IL++         LD L   +        +I +  +I 
Sbjct: 59  KG--EEIFSAAQTLPMFADRRAILVKKSQDLSAAALDVLLTYLQNPSPTTCLIFQGEKID 116

Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           +        +K   ++     Y      L   I E +    K I   A  +L   +G + 
Sbjct: 117 QRKKFFAEIKKSDCLVEFKRPYE---NQLGAFIREEIKACGKRIDPAAADLLAYMVGNNL 173

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
               ++++K+ +YC     I    +K ++ DT V  + E+ +A  +     A+      L
Sbjct: 174 QELASQIEKVVTYCGGRDSILMDDIKAVVSDTKVDTVFELADAVGEKDPTKAMRTLYTIL 233

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
                   LL    + F+ L ++  + +   +S  +I +    N   + + ++ ++    
Sbjct: 234 RDGEAPLMLLAMLARHFRQLWRVRELMDR-RVSSAEIGKSAGINPYFL-KKVMDQARNYR 291

Query: 302 NKNL--VRETLHKIDHRIHLARKKKY 325
              L  + E L ++D  +  +  K  
Sbjct: 292 TAELKVIFERLLELDSALKTSGGKPA 317


>gi|332307122|ref|YP_004434973.1| DNA polymerase III, delta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174451|gb|AEE23705.1| DNA polymerase III, delta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 340

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 135/343 (39%), Gaps = 21/343 (6%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +  ++F     K L      ++ +G +       INQ ++       D    +V +A  
Sbjct: 2   QVYPNRFAASLNKGLQ---PFYLIFGDEPQQKLTAINQIREIALAQGFDERQTLVADAQF 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +  T      + SLFS ++ I +E        +    L E+  +N  + +++I   +
Sbjct: 59  ---DWLTLLEATQTLSLFSSRQYIELELPTGKPGTQGSKILTELSTQNNPDILLVIHGAK 115

Query: 121 IKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           I K+    K  +        + CYP     L   + E +     + S +  ++L     G
Sbjct: 116 IGKDVQNSKWFKALDKQGSYVPCYPLEGNALYQWLTEQMRTQGLNASSDISRLLAEYCEG 175

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E++KL      +   T + V+  + D     + ++I+  + G    ++ +   
Sbjct: 176 NLLAASQEIEKLCL-LYPNGNPTLEQVEQAVVDQSRYNVFQLIDVLLAGDSQKSVKMLYR 234

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             +  +  + +L    +++Q L  +       N +  + I   +  I   ++ +   +L+
Sbjct: 235 LESEGVEPNIVLWALTREWQTLSALQA-----NKTAGQSINWNQHRIWKNRQGLYLSALQ 289

Query: 300 IWNKNLVRETLHKI---DHRIHLAR-KKKYLEKNIIFQTILYI 338
             +   +++  HK+   D  +  ++ ++ Y+E  +    +L+I
Sbjct: 290 RLSPVHLQQLQHKLNVMDCALKQSQVERPYVE--LCHLCLLFI 330


>gi|238923979|ref|YP_002937495.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656]
 gi|238875654|gb|ACR75361.1| DNA polymerase III, delta subunit [Eubacterium rectale ATCC 33656]
          Length = 336

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 118/312 (37%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG ++ LI +  ++  K + ++  D  +        I +      +   +   F+
Sbjct: 15  KVYLLYGQERYLIKQYRDKLIKAM-VSEGDSMNFSSFEGDGINQKE--IIDLAETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++ILIE+     K  D L E +  +  +   I     + K + L K A K  + +   
Sbjct: 72  DKRVILIEDAGIFSKAGDELGEYLKDSPESTHFIFVEESVDKRSKLYKAAAKCGNPVEFK 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L   I   +    K +S+ A    +   G D      EL+KL  YC++  +I
Sbjct: 132 --EQTDETLARWIGMRIRKDGKGMSQAAYNSFIEKTGTDMENIDKELEKLLCYCMDKDVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+ +  +     + E+++A    K   A+ L    LA K P+  +++   ++F +L
Sbjct: 190 ELSDVETVTTEQITNKVFEMVDAIASHKQKRALELYYDLLALKEPAMRIMYLISRQFNIL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318
             +           + I  K       +++   Q   R ++ + ++  +      +  + 
Sbjct: 250 MNVKA-MTNKGFGNKDIASKAGCPEWAVRK--YQAQCRAYSLDDLKRAVRDGVAYEEAVK 306

Query: 319 LARKKKYLEKNI 330
             R    +   +
Sbjct: 307 TGRMNDQMAVEL 318


>gi|157644757|gb|ABV59086.1| DNA polymerase III delta subunit [Pseudomonas syringae pv.
           averrhoi]
          Length = 345

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDVGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|327482399|gb|AEA85709.1| DNA polymerase III subunit delta [Pseudomonas stutzeri DSM 4166]
          Length = 343

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 125/307 (40%), Gaps = 17/307 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  +          FS   +  +E   +         S SLF+
Sbjct: 18  PVYVVCGDEHLLCQEACDAIRAATRAQG---FSERQVFHVETGFDWGQLIEAGASLSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K++I   I N     K    L + + +   + +++I   ++  +    K A+       
Sbjct: 75  EKRLIELRIPNGKPGDKGAAALLDYLARPADDTVLLISLPKLDGSTQKTKWAKALIEGKD 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V  +  +P +   L   I + L     S  +EA +++ A + G+ +A+  E++KL     
Sbjct: 135 VQFLQIWPVDAAQLPQWIRQRLAQVGLSADQEAVELIAARVEGNLLAAAQEIEKLKLLA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +   I+   V+  + D+    +  +I+A +QG+  +A+ + +      + +  +L    +
Sbjct: 194 DAGQISADTVQAAVADSARYDVFGLIDAALQGQAAHALHMLEGLRGEGVEAPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI-----WNKNLVRETLH 311
           + +LL  I   +    +  ++   +    +   +R ++ ++L+      W+   +     
Sbjct: 254 ELRLLANI-SQQYGQGVPLDRAFSQARPPVWDKRRPLVSKALQRHDAAGWS--RLLMAAQ 310

Query: 312 KIDHRIH 318
           +ID +I 
Sbjct: 311 RIDEQIK 317


>gi|146284082|ref|YP_001174235.1| DNA polymerase III subunit delta [Pseudomonas stutzeri A1501]
 gi|145572287|gb|ABP81393.1| DNA polymerase III, delta subunit [Pseudomonas stutzeri A1501]
          Length = 343

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 124/307 (40%), Gaps = 17/307 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  +          FS   +  +E   +         S SLF+
Sbjct: 18  PVYVVCGDEHLLCQEACDAIRAATRAQG---FSERQVFHVETGFDWGQLIEAGASLSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K++I   I N     K    L + + +   + +++I   ++  +    K A+       
Sbjct: 75  EKRLIELRIPNGKPGDKGAAALLDYLARPADDTVLLISLPKLDGSTQKTKWAKALIEGKD 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V  +  +P +   L   I + L     S  +EA +++ A + G+ +A+  E++KL     
Sbjct: 135 VQFLQIWPVDAAQLPQWIRQRLAQVGLSADQEAVELIAARVEGNLLAAAQEIEKLKLLA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +   I+   V+  + D+    +  +I+A + G+  +A+ + +      + +  +L    +
Sbjct: 194 DAGQISADTVQAAVADSARYDVFGLIDAALHGQAAHALHMLEGLRGEGVEAPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI-----WNKNLVRETLH 311
           + +LL  I   +    +  ++   +    +   +R ++ ++L+      W+   +     
Sbjct: 254 ELRLLANI-SQQYGQGVPLDRAFSQARPPVWDKRRPLVSKALQRHDAAGWS--RLLMAAQ 310

Query: 312 KIDHRIH 318
           +ID +I 
Sbjct: 311 RIDEQIK 317


>gi|77461180|ref|YP_350687.1| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf0-1]
 gi|77385183|gb|ABA76696.1| putative DNA polymerase III, delta subunit [Pseudomonas fluorescens
           Pf0-1]
          Length = 345

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYIISGDDPLLCQEAADAIRSAARQQGFDERQVFAADANF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK---FTS 136
           +K+++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  EKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGQQ 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S S++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDANQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + V+  + D+    +  + +A + G+  +A+ + +      +    +L    +
Sbjct: 195 G-GQITVETVQAAVADSARFDVFGLTDAVLNGEPAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + +LL  I +         +K   + +  +   ++ ++ ++L+ ++     + L    +I
Sbjct: 254 ELRLLANISLQY-SQGTPLDKCFSQAKPPVWDKRKPLMSKALQRYSAQRWAQLLLEAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|229592791|ref|YP_002874910.1| DNA polymerase III subunit delta [Pseudomonas fluorescens SBW25]
 gi|229364657|emb|CAY52583.1| putaitve DNA polymerase III, delta subunit [Pseudomonas fluorescens
           SBW25]
          Length = 345

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 122/305 (40%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVVSGDDPLLCQEAADAIRTAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++ +   +     K      E   +   + +++I   ++  +    K  +       
Sbjct: 75  EKRLLELRLPSGKPGDKGAAAFIEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFIQIWPVDSNQLPQWIRQRLSQSGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           ED  IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 194 EDGQITVETVQGAVADSARFDVFGLVDAILNGEPAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + ++L  I +         +K   + +  +   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRVLANIALQY-SQGTPLDKAFSQAKPPVWDKRKPLMSKALQRHSAQRWAQLLLEAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|153813607|ref|ZP_01966275.1| hypothetical protein RUMOBE_04030 [Ruminococcus obeum ATCC 29174]
 gi|149830305|gb|EDM85398.1| hypothetical protein RUMOBE_04030 [Ruminococcus obeum ATCC 29174]
          Length = 349

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 114/313 (36%), Gaps = 11/313 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G +  L  +   +    ++    D  +        I+  +    +   +   F+
Sbjct: 35  NAYLLFGEEAYLKIQYKEKLIHALNPD-DDTMNFTKYEGKGIE--VREMIDLCETMPFFA 91

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             +++L+EN    K   D L + +        ++    E+ K + + K  +    ++  +
Sbjct: 92  DHRVVLVENSGFFKNKCDELADYMKTLPDYLRLVFVEEEVDKRSRMYKAVKNCGRIVEFA 151

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               ++  LM      L    + I+    ++ L   G D    R EL+KL +Y +   ++
Sbjct: 152 --KQDEKTLMRWAAGILAREGRKITTRDMELFLTKTGTDMGNIRMELEKLITYTMGQDIV 209

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T + +++I        I +++ A  +     A+ L +  L  + P   +L    ++F+ +
Sbjct: 210 TREDIEEICTTRTENKIFDMVRAVTERNQRRALDLYNDLLTLREPPMRILFLLSKQFRQM 269

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI---DHRIH 318
                       S  +I  +        + NIL  + R ++   + +        +  + 
Sbjct: 270 CLAKK-MAGEGASQNEIATRLGVPSFVAR-NILACA-RAYSVEELEQAEEDFVDAEEAVK 326

Query: 319 LARKKKYLEKNII 331
             R +  L   ++
Sbjct: 327 TGRLQDVLSVELL 339


>gi|312963228|ref|ZP_07777712.1| DNA polymerase III delta subunit [Pseudomonas fluorescens WH6]
 gi|311282494|gb|EFQ61091.1| DNA polymerase III delta subunit [Pseudomonas fluorescens WH6]
          Length = 345

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 122/305 (40%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYIVSGDDPLLCQEAADAIRTAARQQGFDERQVFSADASF---DWGTMLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  EKRLLELRLPSGKPGDKGAAALMEYCSRPAEDTVLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFIQIWPVDSSQLPQWIRQRLSQSGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           ED  IT + V+  + D+    +  +++A + G+  +A+ + +      +    +L    +
Sbjct: 194 EDGQITVETVQGAVADSARFDVFGLVDAILNGEPAHALRMLEGLRGEGVEPPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + ++L  I +         +K   +    +   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRVLANIALQY-SQGTPLDKCFSQARPPVWDKRKPLMSKALQRHSAQRWAQLLLEAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|237798419|ref|ZP_04586880.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021271|gb|EGI01328.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 345

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALIDGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|289648427|ref|ZP_06479770.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 345

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDVGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|330938267|gb|EGH41930.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 345

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGESAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|260590116|ref|ZP_05856029.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583]
 gi|331084373|ref|ZP_08333477.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539628|gb|EEX20197.1| DNA polymerase III, delta subunit [Blautia hansenii DSM 20583]
 gi|330401637|gb|EGG81218.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 326

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 128/315 (40%), Gaps = 11/315 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L  +   + KK + +   D  +  +    + +       +   +   F+ 
Sbjct: 16  VYLLYGEENYLKQQYKEKLKKAL-VQEDDSMNFSMFEGKKTE--PKAIIDLAETMPFFAD 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I +E+    K     L E + +      ++   N++ K N + K  +K+   +    
Sbjct: 73  RRVIFLEDTGFFKNQCGDLPEYMAELPEYICMVFIENDVDKRNRMYKAVKKYGRAVEFG- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              +   +M  +   +    K I+++  ++ L+  G D      EL+KL  Y ++  +IT
Sbjct: 132 -VQDSNTIMRWVLGMMKREGKKITQKDMELFLSKTGTDMGNIERELEKLLCYTMDREIIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            Q ++++       +I ++I A  +     A+ L    LA K P   +L    ++F L+ 
Sbjct: 191 AQDIENVCTTQITNHIFDMIRAVTEKNQKKALDLYYELLALKEPPMRILFLLARQFNLIM 250

Query: 263 KIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           ++  + +C  + S        +     + +N L  + R ++   +R+ + +         
Sbjct: 251 QVKELSKCGYDQSQIAKKAGIQP---FVVKNYLTYA-RKYSTEELRKAVEECVAAETKV- 305

Query: 322 KKKYLEKNIIFQTIL 336
           K  ++   +  + +L
Sbjct: 306 KTGFMTDTMSVELLL 320


>gi|28871929|ref|NP_794548.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855182|gb|AAO58243.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT Q V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       +   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPVWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|298488996|ref|ZP_07007019.1| DNA polymerase III delta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156494|gb|EFH97591.1| DNA polymerase III delta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|330953015|gb|EGH53275.1| DNA polymerase III subunit delta [Pseudomonas syringae Cit 7]
 gi|330960156|gb|EGH60416.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           maculicola str. ES4326]
 gi|330969447|gb|EGH69513.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|257482217|ref|ZP_05636258.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987611|gb|EGH85714.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011320|gb|EGH91376.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGMPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|320322693|gb|EFW78786.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330522|gb|EFW86501.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330873689|gb|EGH07838.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRSLANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|213966844|ref|ZP_03394995.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381975|ref|ZP_07230393.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058765|ref|ZP_07250306.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato
           K40]
 gi|302135141|ref|ZP_07261131.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928694|gb|EEB62238.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT Q V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|331014750|gb|EGH94806.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 345

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAH 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     S +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLSATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT Q V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVQTVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       +   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPVWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|71735953|ref|YP_276512.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556506|gb|AAZ35717.1| DNA polymerase III, delta subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 345

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 122/305 (40%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I  +++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLSKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRSLANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|330873575|gb|EGH07724.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963475|gb|EGH63735.1| DNA polymerase III subunit delta [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 345

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 121/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAVRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVDGAH 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|254482602|ref|ZP_05095841.1| DNA polymerase III, delta subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037293|gb|EEB77961.1| DNA polymerase III, delta subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 337

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 118/299 (39%), Gaps = 18/299 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----INST 77
            V++  G +  L+ E  +Q +            ++ ++      N    W+E     +S 
Sbjct: 18  PVYLISGDEPLLVQECCDQVRLAARNAGCTDREVIDVS------NPGFKWDEILGSASSM 71

Query: 78  SLFSKKKIILIE---NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           SLF+ +K++ +         +     +E + I      +++I + +I K +T  K  +  
Sbjct: 72  SLFADRKLVELRIPTGKPGAEGSKALVEYLNISAGSEDVLLIIAGKIDKQSTNSKWYKAL 131

Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +   A+  +P +   L   +++ +     SI  +A Q+L   + G+ +A+  E++KL  
Sbjct: 132 DNAGAAVQVWPVDAKDLPRWLQQRVSAAGMSIDNDALQLLCDRVEGNLLAAVQEVEKLKL 191

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  IT + V   + +     + ++ +  ++G    ++ +              L  
Sbjct: 192 LAEG-GQITAETVTTSVSNNARYNLFDMTDNALKGNAAGSLKMLHGLRGEGTEPAVALWA 250

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
            L++ + L +     + S  + ++ +      +   +  ++Q +L   +++ +   + +
Sbjct: 251 LLREIRTLYQAQQSVD-SGQNPQQALSSLR--VWKNRIGLMQGALGRHSRDSLSHLMEQ 306


>gi|66047581|ref|YP_237422.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258288|gb|AAY39384.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 345

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 116/299 (38%), Gaps = 10/299 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  IT + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQITVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + + L  +        +  +K+       I   ++ ++ ++L+  +     + L     
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQR 311


>gi|331090750|ref|ZP_08339597.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399858|gb|EGG79517.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 328

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 125/312 (40%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  L  +  ++  K + I+  D  +        I  ++    +   +   FS
Sbjct: 15  RVYLLFGEENYLKKQYKDRLTKAL-ISEGDTMNYAYYEGKGI--DVKEIIDLSETMPFFS 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++I+IEN    K     L E + +       I    E+ K   + K  +    ++ ++
Sbjct: 72  ERRLIVIENSGFFKNATAELAEYMKEIPETTYFIFVETELDKRGKMFKAVKDKGRIVELA 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
               ++  L+  I  ++    K I++     LL+  G D    + E++KL  Y L + +I
Sbjct: 132 --RQDEKTLVRWIYGNVKKEGKQIAESTIYYLLSKCGTDMENLQKEMEKLFCYTLNNDVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             + +  I        I +++NA  + K   A+      LA K P+  +L+   ++F+LL
Sbjct: 190 NMEDIDAICTMQITNEIFDMVNAVAEKKQKRALDRYYDLLALKEPAMRILYLLSRQFRLL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIH 318
            ++           + I  K    + P       E  R +++  +R+ L     I+ R+ 
Sbjct: 250 MEVK-EMAGEGYDKKTIASKAG--LHPYAVGKYIEQSRSFSQEELRKILEESVDIEERVK 306

Query: 319 LARKKKYLEKNI 330
             R    L   +
Sbjct: 307 TGRLGDVLAVEL 318


>gi|302185152|ref|ZP_07261825.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae
           642]
          Length = 345

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 119/305 (39%), Gaps = 13/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  I  + V+  + D+    +  + +A + G+  +A+ + +      + +  +L    +
Sbjct: 194 EEGQINVETVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + + L  +        +  +K+       I   ++ ++ ++L+        + L    +I
Sbjct: 254 ELRALANMSQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHTAKRWSQLLMDAQRI 312

Query: 314 DHRIH 318
           D +I 
Sbjct: 313 DAQIK 317


>gi|163745428|ref|ZP_02152788.1| hypothetical protein OIHEL45_07555 [Oceanibulbus indolifex HEL-45]
 gi|161382246|gb|EDQ06655.1| hypothetical protein OIHEL45_07555 [Oceanibulbus indolifex HEL-45]
          Length = 332

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 110/340 (32%), Gaps = 23/340 (6%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQ 64
           S +  +        +    + YGSD   +  +     K  +     +   L  + A E++
Sbjct: 4   SPREAKPYFTRPDPARTGLLIYGSDAMRVALKRQEFLKNLLGANAEEEMRLSRMPAGELR 63

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKK 123
           ++ +   + I +   F   +  L+E       +   L + +      +  II+ + ++KK
Sbjct: 64  RDPAMLLDAIKAVGFFPGPRAALVEEA--NDNIAKILLDALKDWQPGDAQIIVTAGDLKK 121

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRI 182
            + + K  E   +  A   Y DN     + IE+ L     +   +A   L       D  
Sbjct: 122 TSKVLKAFESHPNAYATPIY-DNPPDRAE-IEQMLKDAGLTPEADAMAALSDLARTLDPG 179

Query: 183 ASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
             R  L+K++ Y L D   I    +      +    +++I++   + +      +     
Sbjct: 180 DFRQTLEKITLYKLGDSTPIGLDDIAACAPTSTEAEVDDILHVVAETRAAEIGPVMSKLQ 239

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
              + +  L     + F+ L +I         +    I           R+      R W
Sbjct: 240 GQGVNAVTLTIMATRHFRTLYRIAA-------NPGAPIYGVR------DRDRAMRQARNW 286

Query: 302 NKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIA 339
               +   L  +       R   +      ++ +  + +A
Sbjct: 287 GAAKLETALAVLTETDLKLRSAGQHAPALALVERAFIRLA 326


>gi|325262637|ref|ZP_08129374.1| DNA polymerase III, delta subunit [Clostridium sp. D5]
 gi|324032469|gb|EGB93747.1| DNA polymerase III, delta subunit [Clostridium sp. D5]
          Length = 329

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 123/311 (39%), Gaps = 11/311 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +  ++F K +     D  +        +  ++    +   +   F++
Sbjct: 16  IYLLYGEENYLKRQYKDRFTKAMLPD-GDTMNYAYYEGKGV--DVREVIDLAETLPFFAE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++++ EN    K     L + I +       I   NE+ K + L K  +    ++ +  
Sbjct: 73  RRLLVFENTGFFKSAGADLADYIKEMPDTTFFIFIENEVDKRSKLFKAVKAKGHIVELPF 132

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              +++ L   +   +    K IS+     LL  +G D    + EL+KL  Y LE   I 
Sbjct: 133 --QDEMTLKKWVLGLVRKENKQISESTVTYLLNKVGTDMENIQKELEKLFCYTLEKDGIL 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V  +       +I +++NA    K   A+ L    +A K P   +L+   +++++L 
Sbjct: 191 PEDVDAVCVTQISNHIFDMVNAVADKKQERALELYYELVALKEPPMRILYLMTRQYRILH 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
           +   +K+     + +    ++  + P       +  + +  + +R  +     I+ R+  
Sbjct: 251 Q---VKDLLKKGYGRKEIASKAGLHPFAAGKYMDQAKQFKSSELRAIMEDSADIEERVKT 307

Query: 320 ARKKKYLEKNI 330
            R    L   +
Sbjct: 308 GRLTDVLAVEL 318


>gi|255280059|ref|ZP_05344614.1| DNA polymerase III, delta subunit [Bryantella formatexigens DSM
           14469]
 gi|255269150|gb|EET62355.1| DNA polymerase III, delta subunit [Bryantella formatexigens DSM
           14469]
          Length = 324

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 118/313 (37%), Gaps = 11/313 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +  L  +  ++ ++ + +   D  +L       I  N     ++  +   F+
Sbjct: 15  NIYLLCGEEDYLKKQYKHRLQEAL-VAPEDTVNLNCYAGKNISVNE--LIDQAETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++++IE+    K     L + +         +   +E+ K   L K  +    ++   
Sbjct: 72  ERRLLVIEDSGFFKSASAQLAQYLENVPPTTYFLFVEDEVDKRQKLYKAVKNHGRIVEFK 131

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                +  L   I   L    ++I++ A ++ L   G D      EL+KL  Y +E  +I
Sbjct: 132 --RQTEDTLSRWILGILKKENRNITRRALELFLEKTGTDMNNISTELEKLLCYTMEKEVI 189

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T + V++I     V  I E++NA   G    A+ L    LA K P   +L    ++F  L
Sbjct: 190 TPKDVEEICTTQTVNKIFEMVNAVSAGNNRRALDLYYDLLALKEPPMRILFLVTRQFNQL 249

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIH 318
            ++  ++       + I  K        +          + +  +R  + +    +  + 
Sbjct: 250 LQVKGLR-SQGYDADSIAGKLGIQRFVAQ--GCVRQSERFTEAQLRRLVTQCVETEEAVK 306

Query: 319 LARKKKYLEKNII 331
                + L   +I
Sbjct: 307 TGNLNEKLGVELI 319


>gi|46907709|ref|YP_014098.1| DNA polymerase III subunit delta [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47094095|ref|ZP_00231820.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226224082|ref|YP_002758189.1| hypothetical protein Lm4b_01491 [Listeria monocytogenes Clip81459]
 gi|254852105|ref|ZP_05241453.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           R2-503]
 gi|300764854|ref|ZP_07074844.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|46880978|gb|AAT04275.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47017525|gb|EAL08333.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225876544|emb|CAS05253.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605407|gb|EEW18015.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           R2-503]
 gi|300514530|gb|EFK41587.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|328465523|gb|EGF36752.1| DNA polymerase III subunit delta [Listeria monocytogenes 1816]
          Length = 343

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|254992216|ref|ZP_05274406.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J2-064]
          Length = 343

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSKNNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|290893842|ref|ZP_06556820.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J2-071]
 gi|290556559|gb|EFD90095.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J2-071]
 gi|313608731|gb|EFR84555.1| DNA polymerase III, delta subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 343

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|16803521|ref|NP_465006.1| DNA polymerase III subunit delta [Listeria monocytogenes EGD-e]
 gi|224500500|ref|ZP_03668849.1| DNA polymerase III subunit delta [Listeria monocytogenes Finland
           1988]
 gi|224501579|ref|ZP_03669886.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           R2-561]
 gi|16410910|emb|CAC99559.1| lmo1481 [Listeria monocytogenes EGD-e]
          Length = 343

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|89092045|ref|ZP_01165000.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92]
 gi|89083780|gb|EAR62997.1| DNA polymerase III subunit delta [Oceanospirillum sp. MED92]
          Length = 338

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 121/297 (40%), Gaps = 10/297 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  ++ +         ++ ++               N+ SLF+
Sbjct: 18  PVYLITGDEPLLSEEASDLLRQTLQQQGFTEREVLHVDGSFSW---EYLLECANALSLFA 74

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +KKII +   S+   KK  + L++ +     ++I++I ++++  ++      +      A
Sbjct: 75  EKKIIELRLGSSKLNKKSSEILQQYLSNPAPDNILMIIADKLDGSSKKSAWFKAIDKCGA 134

Query: 140 I-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I   +P     L + I +     +  +  EA Q+L   + G+ +A++ EL KLS     +
Sbjct: 135 IVEIWPVETAQLPNWIRQRAAQIELQLDDEAIQLLCDRIEGNLLAAKQELSKLSL-LFPN 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++T   V D + D+    I  + +A +QG+      +             +L    ++ 
Sbjct: 194 QMVTADAVVDAVSDSSRYDIYGLSDAALQGQSARCCKILQVLRQDGTEPPVVLWALSKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + L  I    + S  SF+ + Q+    I   ++ + +++ +      + + L +   
Sbjct: 254 RSLAAIQ-QAQSSGQSFDAVCQRER--IWGKRKPMARQAAQRLKPQQINQALRQCAE 307


>gi|260753981|ref|YP_003226874.1| DNA polymerase III subunit delta [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553344|gb|ACV76290.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 337

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 121/323 (37%), Gaps = 13/323 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + V + YG D      + +Q  +            + ++   ++ + +   +E  + SLF
Sbjct: 20  NAVILLYGPDIAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           S  + + +E    E  +L  L+ +I     N+ +II +  +K+ + L K+A     +LA 
Sbjct: 74  SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
           + Y     +   L+          I  +  Q L      +R    +E++K + Y   D  
Sbjct: 132 ASYLPEGENANRLVRALGEEKGLRIRPDIAQKLAIYAENNRALLVSEIEKYTLYLNSDKN 191

Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +T + +  I  D +   +  +        I              +    L+   L+
Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNIALLEQELASLSDVGIEPILLIRVLLR 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  LL  +        +S +K+I+   + I   ++  + ++L +W  + + + +  +   
Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
               ++ K +    + Q +L + 
Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333


>gi|217964373|ref|YP_002350051.1| DNA polymerase III, delta subunit [Listeria monocytogenes HCC23]
 gi|217333643|gb|ACK39437.1| DNA polymerase III, delta subunit [Listeria monocytogenes HCC23]
 gi|307571062|emb|CAR84241.1| DNA polymerase III, delta subunit [Listeria monocytogenes L99]
          Length = 343

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++  + E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLK-VLEQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|255027487|ref|ZP_05299473.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J2-003]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDEMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|254931416|ref|ZP_05264775.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262]
 gi|293582966|gb|EFF94998.1| DNA polymerase III subunit delta [Listeria monocytogenes HPB2262]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILKGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|47095434|ref|ZP_00233044.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254827769|ref|ZP_05232456.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           N3-165]
 gi|254829760|ref|ZP_05234415.1| DNA polymerase III subunit delta [Listeria monocytogenes 10403S]
 gi|254898353|ref|ZP_05258277.1| DNA polymerase III subunit delta [Listeria monocytogenes J0161]
 gi|254912155|ref|ZP_05262167.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936483|ref|ZP_05268180.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900]
 gi|47016255|gb|EAL07178.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258600149|gb|EEW13474.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           N3-165]
 gi|258609076|gb|EEW21684.1| DNA polymerase III subunit delta [Listeria monocytogenes F6900]
 gi|293590127|gb|EFF98461.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|254824460|ref|ZP_05229461.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J1-194]
 gi|255520861|ref|ZP_05388098.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J1-175]
 gi|293593697|gb|EFG01458.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           J1-194]
          Length = 343

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEVYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|296133955|ref|YP_003641202.1| DNA polymerase III, delta subunit [Thermincola sp. JR]
 gi|296032533|gb|ADG83301.1| DNA polymerase III, delta subunit [Thermincola potens JR]
          Length = 346

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 134/331 (40%), Gaps = 25/331 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINSTSLF 80
            V++F+G +  L+ E++ +FK  +       F++ V+    +  ++I        +    
Sbjct: 17  PVYLFWGEETFLLEEVLAKFKYQLIPPDVMDFNMDVVEGKNVSPEDIVRL---ATTLPFM 73

Query: 81  SKKKIILIENLSTEKKVLDC-------------LEEIIIKNICNHIIIIKSNEIKKNNTL 127
           S K++++IEN    K                  L E   + +    +I  S+ + +   L
Sbjct: 74  SDKRVVIIENADLFKAQKKTGEKSDQAKSQEELLIEYCKQPLDTTCLIFTSDSVDRKKKL 133

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  ++    +  +   D  I L D +E  +    K+I  EA   L+A +G +      E
Sbjct: 134 FKAVQETGMAVEFTPLKD--IELNDWVENRINGMGKNIETEAIDELVAAVGSNLRMLDAE 191

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL +Y  +  +I  + V  ++  T  L I E+++A  +     AI L    +    P 
Sbjct: 192 LRKLFNYTGDRKVINREDVLQLVSKTTNLSIFELVDAVGERNSQKAIQLMREMIIYGEPP 251

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL    + F+ L +   +      + +++  + + +    ++ +     + +++  + 
Sbjct: 252 VRLLFMVAKHFRTLLQAKTLYLT-GYAEKQVATQLQIHPYVARKCV--RQSKNFSREELE 308

Query: 308 ETLHKIDHR---IHLARKKKYLEKNIIFQTI 335
           + L KI      I  + ++  L   ++F  +
Sbjct: 309 QALEKILETDISIKTSYREPVLALELLFVNL 339


>gi|56552329|ref|YP_163168.1| DNA polymerase III subunit delta [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543903|gb|AAV90057.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 337

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 120/323 (37%), Gaps = 13/323 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + V + YG D      + +Q  +            + ++   ++ + +   +E  + SLF
Sbjct: 20  NAVILLYGPDVAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           S  + + +E    E  +L  L+ +I     N+ +II +  +K+ + L K+A     +LA 
Sbjct: 74  SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
           + Y     +   L+          I  +  Q L      +R    +E++K + Y   D  
Sbjct: 132 ASYLPEGENANRLVMALGEEKGLRIRPDVAQKLAIYAENNRALLVSEIEKYALYLNSDKN 191

Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +T + +  I  D +   +  +                       +    L+   L+
Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNTALLEQELASLSDVGIEPILLIRVLLR 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  LL  +        +S +K+I+   + I   ++  + ++L +W  + + + +  +   
Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
               ++ K +    + Q +L + 
Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333


>gi|167746551|ref|ZP_02418678.1| hypothetical protein ANACAC_01261 [Anaerostipes caccae DSM 14662]
 gi|167653511|gb|EDR97640.1| hypothetical protein ANACAC_01261 [Anaerostipes caccae DSM 14662]
          Length = 326

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 121/319 (37%), Gaps = 17/319 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77
            +++FYG +K L+ +  ++ K+ +  +        F     +  EI          I + 
Sbjct: 16  NLYLFYGKEKYLVAQTRDKLKEALIPSGDTMNYSYFEGKKTDIPEI-------LELIQTM 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+  ++++++     KK  D     + +     I++I  +++ K + + K   K    
Sbjct: 69  PFFNDYRLLVLDQTELGKKSNDDFLNALKEMPETTILLIIEDDVDKRSKIYKYINKEGCA 128

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           ++       +  L+  + + L   QK ++++  Q+ L   G D    +NEL+KL SY   
Sbjct: 129 VSFE--TPKEKDLVLWVAQMLKKEQKKMTQKDIQLFLYKTGQDMFTIKNELEKLISYTKG 186

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             +I  + ++ +        I  ++ A  + +    + L    +  K     +L   +++
Sbjct: 187 REVIGAEDLEALTTAQTTNQIFVMLEAIAKKQRDTVLKLYYDLIELKESPFGILALLVRQ 246

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L +   + +      E   +          +  L++ +R++ +  +   + K     
Sbjct: 247 CNQLLQTQSLLKAGKSQGEMAKELKVPP-FVAGK--LKQQVRLFKREEL-YEMIKKCAAT 302

Query: 318 HLARKKKYLEKNIIFQTIL 336
               K   +   I  + +L
Sbjct: 303 DEGIKTGKITDRIGVELLL 321


>gi|330505007|ref|YP_004381876.1| DNA polymerase III subunit delta [Pseudomonas mendocina NK-01]
 gi|328919293|gb|AEB60124.1| DNA polymerase III subunit delta [Pseudomonas mendocina NK-01]
          Length = 342

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 114/298 (38%), Gaps = 10/298 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +  L  E  +  +          F    +   E   +         S SLF+
Sbjct: 18  PVYAISGDEPLLCQETADAIRNACRQQG---FGERQVFNAEANFDWGNLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++ +   +     K    L E + +   + ++++   ++  +    K A+      A
Sbjct: 75  EKRLLELRLPSGKPGDKGAAALLEYLARPPEDTVLLLSLPKLDGSTQKSKWAKALIDGQA 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     + S +A +++ A + G+ +A+  E++KL     
Sbjct: 135 SQFIQIWPVDANQLPQWIRQRLAQAGLNASADAVEMIAARVEGNLLAAAQEVEKLKLLAD 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  + V+  + D+    +  +I+  + G   +A+ + +      + +  +L    +
Sbjct: 195 GNQ-VDAETVQAAVADSARFDVFGLIDCALGGDAAHALRMLEGLRGEGVETPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +LL  I    +   I  +K        +   +R ++ ++L+  +     + L +  
Sbjct: 254 EIRLLAGIAHQ-QSQGIPLDKAFSSARPPVWDKRRPLVSKALQRHSSKRWGQLLQQAQ 310


>gi|254486189|ref|ZP_05099394.1| DNA polymerase III, delta [Roseobacter sp. GAI101]
 gi|214043058|gb|EEB83696.1| DNA polymerase III, delta [Roseobacter sp. GAI101]
          Length = 332

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 110/322 (34%), Gaps = 23/322 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            + YG D   +     +F K +      +   L  + A +++++     + I +   F  
Sbjct: 22  LLIYGGDPMRVAMRRQEFLKALLGANAEEEMRLTRIQAADLRRDPPMLLDAIKAVGFFPG 81

Query: 83  KKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +   +E+      +   L + +      +  II+ + ++KK + + K  E   +  A  
Sbjct: 82  PRAAFVEDA--NDNIAKILMDALAGWQPGDAQIIVTAGDLKKTSKVLKAFEAHKTAFATP 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKLSSY-CLEDI 199
            Y DN     + IE  L   + S   +A   L       D    R  ++K++ Y   +  
Sbjct: 140 IY-DNPPDRAE-IERILAEARLSPEPDAMGALTELARVLDPGDFRQMVEKITLYKIGDAG 197

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T + V +    +    +++I++   + +  +   +     A  + +  L+    + F+
Sbjct: 198 PLTAEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTLIIMATRHFR 257

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L +I         +    I           R+      + W    +   L  +      
Sbjct: 258 TLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETALTVLTDTDLT 304

Query: 320 ARK--KKYLEKNIIFQTILYIA 339
            R   +      ++ +  + +A
Sbjct: 305 LRSAGQHAPTMALVERAFIRLA 326


>gi|160880101|ref|YP_001559069.1| DNA polymerase III, delta subunit [Clostridium phytofermentans
           ISDg]
 gi|160428767|gb|ABX42330.1| DNA polymerase III, delta subunit [Clostridium phytofermentans
           ISDg]
          Length = 325

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 116/311 (37%), Gaps = 12/311 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG++  L     N+ K  I     D  +   +   +I  N +   +   +   FS +
Sbjct: 17  YLLYGNEAYLKRFYKNKLKAGILGD-SDEMNFTYVEGKDI--NCNEMIHIAQTMPFFSDR 73

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           +++LIEN    K       + I        ++   NE+ K N L K  +    +  +   
Sbjct: 74  RLLLIENSGWFKN-QSEFADYIRDMPETTYVVFVENEVDKRNRLYKAVKDLGYISEL--N 130

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
             ++  L   +   L    K I+       L  +G +    ++E+ KL SYC E  +ITE
Sbjct: 131 GLDEKSLKMWVVSLLQRENKKITDATLTYFLNKVGTNLDNIQSEIDKLVSYCYEREVITE 190

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           + +K +  +     + ++++A        A+ +    L  +     +L+   +   L+ +
Sbjct: 191 EDIKAVCSEQITGKMFQMLDAIASKNQKLALEMYYDLLTLREKPMTILYLLNRHINLIMQ 250

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIHLA 320
              +      + E   +         K        R + +  ++++L    +I+ ++   
Sbjct: 251 CKALLSKRTSNAEIASKIGVPPFAVAKYAA---QARNFTEENLKKSLILGTEIEEQVKTG 307

Query: 321 RKKKYLEKNII 331
           R    +   ++
Sbjct: 308 RLIDQIGVELL 318


>gi|304310514|ref|YP_003810112.1| DNA polymerase III delta subunit [gamma proteobacterium HdN1]
 gi|301796247|emb|CBL44455.1| DNA polymerase III delta subunit [gamma proteobacterium HdN1]
          Length = 344

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 125/322 (38%), Gaps = 17/322 (5%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I+ H   Q           ++I  G +  L+ E  +  + +   + +    +    A +
Sbjct: 7   QIKPHFERQGPQA-------LYIVSGEEPLLMQEACDAIRASARASGYLEREVY---ASD 56

Query: 63  IQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +    +   NS SLF ++K+I   ++ +  +      L   + +   + ++++   +
Sbjct: 57  AHISWPAIFEAANSLSLFGERKLIELRLDKVKFDDSAKKILSSYLERPNPDTLLLMILPK 116

Query: 121 IKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           ++K  +  K  +      + I  +P     L   I+  +       S+EA  +L   + G
Sbjct: 117 LEKAFSTTKWFQSIEQKAIVIQVWPLETKDLPRWIDTRIRQAGMQASREAIALLAERVEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E++KL         +    ++  + D     + ++++ +++G    A+ +  F
Sbjct: 177 NLLAAAQEIEKLRL-LNGAGHLDAAAIESTVSDHARYNLFDLVDQSLEGNAETALKMLHF 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             AS      LL  F+++ + L  + + ++       K++Q     I   ++  ++++L 
Sbjct: 236 CRASGEEPLILLWAFVKELRALYAM-LEQQQRGTPPAKLLQDFR--IWNKRKPTIEKALN 292

Query: 300 IWNKNLVRETLHKIDHRIHLAR 321
             +   V   L         A+
Sbjct: 293 KQSLLRVETALSISSQIDRAAK 314


>gi|284801868|ref|YP_003413733.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5578]
 gi|284995010|ref|YP_003416778.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5923]
 gi|284057430|gb|ADB68371.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5578]
 gi|284060477|gb|ADB71416.1| DNA polymerase III subunit delta [Listeria monocytogenes 08-5923]
          Length = 343

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEMVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVDHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITIQDVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|254516565|ref|ZP_05128624.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR5-3]
 gi|219674988|gb|EED31355.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR5-3]
          Length = 344

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 17  LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
               H V++  G +  L+ E  +Q +            +V  ++ +   N      + +S
Sbjct: 13  DRTLHSVYLISGDETLLVQECADQVRAAAKRAGCHERHVV--DSSDRGFNWQDLTQDSSS 70

Query: 77  TSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            SLF+++++I   I N     +    L E +     + I++I + +I K +T  K  +  
Sbjct: 71  MSLFAEQRLIELRIPNGKPGAEGSKALLEYLAHAPDSDILLIVAGKIDKASTNSKWYKAI 130

Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 +  +P N   L   +E        SI ++   +L   + G+ +A+  EL+KL  
Sbjct: 131 DQAGATVQLWPVNADDLPRWLEGRARSINLSIDRDGLSLLAERVEGNLLAAVQELEKLRL 190

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               D  IT + V D + ++    +  +I+  + G+  +++ +     +      ALL G
Sbjct: 191 LA-GDATITAKQVADAVANSARFDVFTLIDVALAGRAGDSLRMLHGLRSEGTQPPALLWG 249

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            +++ +LL  + +    +     + + +    +   +++++Q ++R        E L
Sbjct: 250 LVRELRLLRAV-LQAVAAGRQPMQALNEAR--VWKSRQSVIQAAMRRHTIASCEELL 303


>gi|332311923|gb|EGJ25018.1| DNA polymerase III subunit [Listeria monocytogenes str. Scott A]
          Length = 343

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILKGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAITRLVELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  + +  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKEITIQDVESLVVRSLEQNIFLLHDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + + +  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|16800584|ref|NP_470852.1| DNA polymerase III subunit delta [Listeria innocua Clip11262]
 gi|16413989|emb|CAC96747.1| lin1516 [Listeria innocua Clip11262]
          Length = 343

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 120/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTTEKSKNKVEHDAAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   +E  L      +S+EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWLEAKLNENNMQMSQEAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + +++  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAASKLK--VHPFRVKLASKQAKNFSELQLNQALKR 309

Query: 313 IDHRIHLAR 321
           +       +
Sbjct: 310 LAEIDLEMK 318


>gi|225388434|ref|ZP_03758158.1| hypothetical protein CLOSTASPAR_02170 [Clostridium asparagiforme
           DSM 15981]
 gi|225045515|gb|EEG55761.1| hypothetical protein CLOSTASPAR_02170 [Clostridium asparagiforme
           DSM 15981]
          Length = 325

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 114/317 (35%), Gaps = 12/317 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++ +G +  L     N+ K+ ++    D  +        I  N+       ++   F++
Sbjct: 16  AYLLFGDEAFLKKSYKNRLKEAVTGG--DTMNYNYYEGKGI--NVPEILGMADTMPFFAE 71

Query: 83  KKIILIENLSTEKKVLDC--LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           K++IL+E+    K   +   L E +        ++    E+ K + L K  +K+     +
Sbjct: 72  KRLILVEDSGFFKGGGEAESLAEYLPNVPDTTCLLFVETEVDKRSKLYKAVKKYGYAAEM 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                    L       L    K I+     + L+  G D     +EL KL SY L   +
Sbjct: 132 V--RQEPAQLARWAAGVLAREGKKITGRTMDLFLSKTGDDMENILSELDKLISYTLGRDV 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT+  V+ +        I ++I A    +   A+ L +  L  K P   +L    ++F  
Sbjct: 190 ITDADVEAVCVTQVTNKIFDMITAISSRQTRKAMDLYEDLLTLKEPPMRILFLIARQFNQ 249

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           + ++  +     +    I  K +       + +L    + + K  +   ++        A
Sbjct: 250 ILQVKELM-GKGMDKSTIASKLKLAPFVAGKIML--QAKSFTKEQIFSYVNLCVDAE-EA 305

Query: 321 RKKKYLEKNIIFQTILY 337
            K   L   +  + ++ 
Sbjct: 306 VKTGKLADRLAVELLIA 322


>gi|241761615|ref|ZP_04759702.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373923|gb|EER63456.1| DNA polymerase III, delta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 337

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 120/323 (37%), Gaps = 13/323 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + V + YG D      + +Q  +            + ++   ++ + +   +E  + SLF
Sbjct: 20  NAVILLYGPDIAQSRAIADQMNR------FPEIEKIEISGAVLKNDPAILTDEAAAISLF 73

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           S  + + +E    E  +L  L+ +I     N+ +II +  +K+ + L K+A     +LA 
Sbjct: 74  SAARYLRVEASGDE--ILAALQLLIDIPAINNSVIIVTGNLKRESKLLKLALADKKILAC 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
           + Y     +   L+          I  +  Q L      +R    +E++K + Y   D  
Sbjct: 132 ASYLPEGENANRLVIALGEEKGLRIRPDIAQKLAIYAENNRALLVSEIEKYALYLNSDKN 191

Query: 200 ---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +T + +  I  D +   +  +                       +    L+   L+
Sbjct: 192 NPQELTHEVISLIGADNNEGNLARLTGIFFSKNTALLEQELASLSDVGIEPILLIRVLLR 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  LL  +        +S +K+I+   + I   ++  + ++L +W  + + + +  +   
Sbjct: 252 RALLLADL-AGLLSKGLSIQKVIESAGRKIFWKEKGEIAKALSLWRIHQINQLITFLVSL 310

Query: 317 IHLARKKKYLEKNIIFQTILYIA 339
               ++ K +    + Q +L + 
Sbjct: 311 ECQIKQGKMIGAFYVEQQLLLLI 333


>gi|167766649|ref|ZP_02438702.1| hypothetical protein CLOSS21_01155 [Clostridium sp. SS2/1]
 gi|167711772|gb|EDS22351.1| hypothetical protein CLOSS21_01155 [Clostridium sp. SS2/1]
          Length = 346

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 119/317 (37%), Gaps = 19/317 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77
             ++FYG +K +I ++ NQ KK +           F     +A+EI            + 
Sbjct: 35  RFYLFYGEEKYMISQMKNQLKKALVSEDDTMNYSYFEGKRADAIEI-------VELAKTL 87

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             FS  + ++++     KK  D   E + +     +++   + + K + + K   K    
Sbjct: 88  PFFSDHRFLILDETGLGKKSDDTFIEGLKEASDTSVVLFIEDSVDKRSKIYKFLSKEGHA 147

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +      D    L   +   L    K +S    +  L   G D    +NEL+KL SY  E
Sbjct: 148 VCFESAGD--KELSRWLISLLKKEGKQMSSATMRSFLYRCGSDMYTLKNELEKLISYVGE 205

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              IT + ++++        I  ++ A  + +    + L    +  K     +L   +++
Sbjct: 206 REEITIRDLEELTSSQTTNQIFVMLEAIARKQREKVLTLYYDLIELKESPFGILALLVRQ 265

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKID 314
              L ++    +C   S   I ++ +       +  L++  ++++ + +R   E   K D
Sbjct: 266 CNQLLQVK-DLDCLGKSNGMIAKQMKVPAFVAGK--LKDQAKMFSMDTLRDMIEACAKTD 322

Query: 315 HRIHLARKKKYLEKNII 331
             I   +    +   ++
Sbjct: 323 ESIKTGKISDRVGVELL 339


>gi|146308803|ref|YP_001189268.1| DNA polymerase III subunit delta [Pseudomonas mendocina ymp]
 gi|145577004|gb|ABP86536.1| DNA polymerase III, delta subunit [Pseudomonas mendocina ymp]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 120/328 (36%), Gaps = 11/328 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +  L  E  +  +          FS   +   E   +         S SLF+
Sbjct: 18  PVYAISGDEPLLCQEAADAVRNACRQQG---FSERQVFNAEANFDWGNLLQAGASLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++ +   +     K    L E + +   + ++++   ++  +    K A+       
Sbjct: 75  EKRLLELRLPSGKPGDKGTAALLEYLGRPPEDTVLLLSLPKLDGSTQKSKWAKALIDGQV 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   I + L     S S +A +++ A + G+ +A+  E++KL     
Sbjct: 135 SQFIQIWPVDANQLPQWIRQRLAQAGLSASADAVEMIAARVEGNLLAAAQEVEKLKLLAE 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  + V+  + D+    +  +I+  + G   +A+ + +      + +  +L    +
Sbjct: 195 GNQ-VDAETVQAAVADSARFDVFGLIDCALAGDAAHALRVLEGLRGEGVETPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + +LL  I    +   I  +K        +   +R ++ ++L+  +     + L +    
Sbjct: 254 EIRLLAGIAHQ-QSQGIPLDKAFASARPPVWDKRRPLVSKALQRHSSKRWGQLLQQAQLI 312

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344
                K +          +L +     +
Sbjct: 313 DAQI-KGQAPGDPWSDLALLTLQLAGQR 339


>gi|291550850|emb|CBL27112.1| DNA polymerase III, delta subunit [Ruminococcus torques L2-14]
          Length = 327

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 125/324 (38%), Gaps = 14/324 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST-FWNEINSTSLFS 81
           V++  G +  L  +  N+F K +          +  +  E +        +   +   F+
Sbjct: 16  VYLLCGEEGYLKKQYKNRFVKAMLPEGD----TMNYSYYEGKNTPVKEAIDLAETLPFFA 71

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           ++++I+ EN    K      L + I         I    EI K N L K  +    +  +
Sbjct: 72  ERRLIVFENTGFFKTAAGADLADYIKDMPETTCFIFVEEEIDKRNKLYKAVKSKGYIAEL 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           S    +   L   +   +   QK IS+      L  +G D    + EL+K+  Y LE   
Sbjct: 132 S--TQDAGTLKRWVAGLVRKEQKQISESVIVYFLDKVGTDMENIQGELEKVFCYALERDT 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT++ +  +       +I E+++A   G    A+ L    LA K P   +L   ++++++
Sbjct: 190 ITKEDIDAVCVTQITNHIFEMVDAVAAGNQQKALDLYYELLALKEPPMRILFLLVRQYRM 249

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +  +        ++I  K   +     +N ++++ + +    +R  + +        
Sbjct: 250 LFHVKALA-NQGYGRKEIASKAGLHPFVAGKN-MEQA-KRFKMGQLRRVMEEGAQLEQDV 306

Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344
            K   L  N+  +  L+I + + +
Sbjct: 307 -KTGLLTDNLAVE--LFIVKQSER 327


>gi|297584662|ref|YP_003700442.1| DNA polymerase III subunit delta [Bacillus selenitireducens MLS10]
 gi|297143119|gb|ADH99876.1| DNA polymerase III, delta subunit [Bacillus selenitireducens MLS10]
          Length = 343

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 134/323 (41%), Gaps = 21/323 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG++  L+ +++ +  +         F+    +  EI   I     E  +     
Sbjct: 17  RVYVLYGTETYLMEDVMQRILRQSLSDDEYDFNYSKFDMNEI--PIELAVEEAFTFPFMG 74

Query: 82  KKKIILIEN---LSTEKKVLD------CLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
            K+++LI +   L+ +K   D       L   + +     ++II ++  ++ +   L K 
Sbjct: 75  GKRVVLIRDPWFLTAQKPKTDVEHNTDALLTYVSQAPEETVMIIMASYEKLDERKKLVK- 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E           P ++  L D I       +    KEA    L   G D +   +E+ K
Sbjct: 134 -ELKKQTRVFKAEPMSERELRDWISAKSADAEVQFEKEAADAFLTLTGADLMIMSSEINK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+ Y  +  +IT++ V D++  +    I  +++AT++ +I  A+ +    L  K     +
Sbjct: 193 LTLYAADGGVITKEIVYDLVARSLEEDIFALVDATVKQRIDEAMKIYKDLLKQKEAPIKI 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE-- 308
           L   +++F++L ++  +K+      EK +    K I P    +  + +  + K+ + +  
Sbjct: 253 LALVVRQFRILHQVKELKDQG--YSEKAMAGKLK-IHPYVVKLAAKQVSSFRKHDLLKQI 309

Query: 309 -TLHKIDHRIHLARKKKYLEKNI 330
             L ++DH+I   R    L   +
Sbjct: 310 DELAELDHQIKTGRISDELGVEL 332


>gi|239626098|ref|ZP_04669129.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520328|gb|EEQ60194.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 325

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 106/263 (40%), Gaps = 9/263 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G +  L     N+ K  I+      ++      + + + I    +   +   FS+
Sbjct: 16  VYLLFGEEAFLKKSYKNRLKDAITDGDTMNYNYYEGKGMNVNEIIG-LSD---TMPFFSE 71

Query: 83  KKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           K++IL+E+    K     D + + +        +I   +E+ K + L K  +K+     +
Sbjct: 72  KRLILMEDSGFFKGGAGADEMTQYMEHIPETTCLIFVESEVDKRSRLYKAVKKYGYAAEL 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           S    +   L       L    + I+    ++ L+  G D     +EL+KL SY +   +
Sbjct: 132 S--HQDSSQLARWAAGILSKNGRKITGRTMELFLSKTGDDMENISSELEKLISYTMGRDI 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T++ V+ I        I ++I+A    +   A+ L +  L  K P   +L    ++F  
Sbjct: 190 VTDEDVETICTTQVTNKIFDMISAISARQTRKAMDLYEDLLTLKEPPMRILFLIARQFNQ 249

Query: 261 LEKIHIIKECSNISFEKIIQKTE 283
           + ++  +     +    I  K +
Sbjct: 250 ILQVKELV-GKGMDKGTIASKLK 271


>gi|260438536|ref|ZP_05792352.1| DNA polymerase III, delta subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809125|gb|EFF68330.1| DNA polymerase III, delta subunit [Butyrivibrio crossotus DSM 2876]
          Length = 326

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 11/294 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++ YG +  L     N+ K+ I     D  +       +I  +I  F +   +   FS+
Sbjct: 16  AYLIYGEEDYLKNFYKNKLKEAICGD--DTMNFSYYGGKDI--DIKDFIDTSQTMPFFSE 71

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAIS 141
           +++IL+E     KK    + E +     +   +   +E+ K N L KI  EK        
Sbjct: 72  RRLILVEGSGLFKKSSTEVAEAVDIAPESTYFVFVEDEVDKRNKLFKIISEKGYVCEMK- 130

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                +  LM           K I+K      L+  G D    +NE  KL  Y  +   I
Sbjct: 131 --EQKEAELMTWGVRIFAAADKRITKSNMAYFLSKTGSDMNNIKNEADKLIDYAKDSEEI 188

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T++ +  +        + +++ A         + L    L  K P   +L    ++F  L
Sbjct: 189 TKEDIDAVCIVQIQDKVFDMVEALAMRDRDKVLRLYSDLLELKEPPMKILAIMGKQFATL 248

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             +  + + ++   E   +   +     K        + +    +   + +I  
Sbjct: 249 YGVKCMMDNNSPQGEIADKLGIRPFFISK---YISQAKGFTSKELECGMKEIAE 299


>gi|85709983|ref|ZP_01041048.1| DNA polymerase III delta subunit [Erythrobacter sp. NAP1]
 gi|85688693|gb|EAQ28697.1| DNA polymerase III delta subunit [Erythrobacter sp. NAP1]
          Length = 346

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 112/348 (32%), Gaps = 15/348 (4%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
           H    +          +F F G D+       +     +     D    + L+  +++++
Sbjct: 5   HSEFARGLPRTAQQASIFFFCGPDEAG----ASAAATKVIEALPDAGERIELSGGDLKRD 60

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNI----CNHIIIIKSNEIK 122
            +   +E  S SLF  K+ IL+     E    D L+ +I            +++ +    
Sbjct: 61  PAKLGDEARSGSLFGDKRHILVRATGDEAH--DALKALIETADVGGGDAAPVLVVATSAT 118

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             +   K+ EK    L    YP +   +   +          +  +  + +    G D  
Sbjct: 119 DKSRTAKLLEKRPDALVTMFYPPDLSSVAASVRSMADGAGLRLGGDLAERIARAAGLDVR 178

Query: 183 ASRNELQKLSSY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            +++E+ KL+ Y           + +   +I   T       I+NA + G++    +   
Sbjct: 179 LAQSEVDKLALYLDASSQSPKTASVEDYGEIGASTEEDGFAPIVNAVLGGELGKLAVELK 238

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE-KIIQKTEKNIIPMKRNILQES 297
                 +    LL    ++   L +I                +K    I   +   +++ 
Sbjct: 239 RMKELGLNPVGLLLALERRAAQLAQIAARLGPRGSFENLDRGEKARLGIFWKEERDIRQQ 298

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +  W    +   + ++              + ++ Q +  IA+ A K 
Sbjct: 299 VTRWRTAKLERLVPRLIALHQSLLANSQAAELLLAQDLAEIARFAAKG 346


>gi|78223501|ref|YP_385248.1| DNA polymerase III subunit delta [Geobacter metallireducens GS-15]
 gi|78194756|gb|ABB32523.1| DNA polymerase III, delta subunit [Geobacter metallireducens GS-15]
          Length = 334

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 119/328 (36%), Gaps = 14/328 (4%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   +       ++ F+G +  L+   + +   +        F+L V    E 
Sbjct: 1   MKIDEFNKALDRGEIS--PLYYFHGDEPHLMERAVKRLMDSAVPPDFRDFNLDVFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + +     +   +  +F+ ++++L++         L+ L   +        ++    ++ 
Sbjct: 59  KGDE--VASVAQTLPMFADRRMVLVKRAGDLSAAALEILASCVADPPPTTCLVFMGEKVD 116

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           +        E       + C    +  L   I E      K +   A ++L+  +G +  
Sbjct: 117 QRKKF--FQEMKKKGELVECKRPYENQLGAFIREEAKGLGKRVEPAAAEMLVYLVGNNLG 174

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
               +L+K++ Y  +   I+ + V+ I+ DT V  + ++ NA  +  +  A+      L 
Sbjct: 175 ELSTQLEKVALYVGQRETISVEDVRGIVSDTKVESVFDLTNALGERNVVKALRSLATILR 234

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    + F+ L ++  +   +    ++ I +    I P     +    R ++
Sbjct: 235 DGEAPLMLLAMIARHFRQLWRVRDLM--AQKVPQQDISRL-AGINPYFIKGVMAQARNFS 291

Query: 303 KNLVRETLHKIDHRIHLAR----KKKYL 326
            + +++    +       +    K+  L
Sbjct: 292 ASELKKVFEGLYATDLALKGGGAKRPTL 319


>gi|95930684|ref|ZP_01313418.1| DNA polymerase III, delta subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133336|gb|EAT15001.1| DNA polymerase III, delta subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 331

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 5/269 (1%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +   YG +  L+ + +              F+L+VL+  +   + +   +   +   F++
Sbjct: 18  LLFLYGEEAFLLEQSLKHLLNTAVDPATRDFNLLVLSGKD--ADPTLVMDTARTFPAFAE 75

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +++++I+         LD L   I +      ++  +N I K     +  +K   +  I 
Sbjct: 76  RRVVVIKQAQDLSAGTLDALVPYIQEPAAECCLVFCANRIDKRKKFFQSFKKTGEL--IE 133

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
             P     +   + +      K  S++   +    +G        EL KL+SY  +  +I
Sbjct: 134 FKPLFANKIPAFVRDQARQFGKQFSEDGLSLFCKRVGTYLTEIHGELLKLASYLGDKPVI 193

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V  ++CDT V  I ++ +     K+  A+ L++           +L    + F+ L
Sbjct: 194 DVDDVAAVVCDTRVDSIFDLTDVVGARKLPQALTLSERLQLEGEAPLKILAMLTRHFRQL 253

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMK 290
            K   + E      +             +
Sbjct: 254 WKTRSLLEQGASQQDVAKAVRINPYFVER 282


>gi|94501465|ref|ZP_01307984.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65]
 gi|94426430|gb|EAT11419.1| DNA polymerase III subunit delta [Oceanobacter sp. RED65]
          Length = 342

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 114/302 (37%), Gaps = 15/302 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G +  L  E+  Q +    +     F+   ++  E   N S  ++  N+ SLF+
Sbjct: 18  PFYVVSGDEPLLSQEIGEQLRS---VARQQGFTEREVHHAEHNYNWSELYDSANAMSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++KII   I+N          +  +  +   +++ II    + K     K  +      A
Sbjct: 75  ERKIIEVRIDNGKPGDAGAKTMLGLCEQPNPDNLFIIFLPRLDKKQQNSKWFKALDKAGA 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+ +P  +  L   I   +        +EA  +L     G+ +A+  E++KL+   +  
Sbjct: 135 FIAHWPIERQQLPGWIANRMRQHGMKADREALALLADRTDGNLLAAAQEVEKLTL--VGK 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT + ++  + +     +  +  A ++G     + +        +     L  F    
Sbjct: 193 NEITIEDIEASVGEASRFDVFALSEAALKGDKKRCLHVLQVLQGEGLNVLQPLAIFANDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR----NILQESLRIWNKNLVRETLHKID 314
           + L  +  + + S +S +K +Q+ +  +   K+          LR  +     +  ++ID
Sbjct: 253 RQLLSMQQLIQ-SGLSDDKALQQLK--VFWPKKQQQLKAATRRLRTQDIEECLQLCNQID 309

Query: 315 HR 316
             
Sbjct: 310 MA 311


>gi|160940348|ref|ZP_02087693.1| hypothetical protein CLOBOL_05238 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436928|gb|EDP14695.1| hypothetical protein CLOBOL_05238 [Clostridium bolteae ATCC
           BAA-613]
          Length = 353

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 106/273 (38%), Gaps = 15/273 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNALEIQKNISTFWN 72
                  V++ +G +  L     ++ ++ ++      ++ F    +N  EI         
Sbjct: 36  KDRTFKPVYLLFGEEAFLKKSYKSRLREALTDGDTMNYNYFEGKGMNVNEIIG------- 88

Query: 73  EINSTSLFSKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
             ++   F++K++IL+E+    K     D L E +     +  ++   +E+ K + L K 
Sbjct: 89  LADTMPFFAEKRLILMEDSGFFKGGAGADELTEYMGGIPESTCLVFVESEVDKRSRLYKA 148

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K+     +S        L       L    + I+    +  L+  G D     +EL+K
Sbjct: 149 VKKYGYAAELS--HQEPAQLARWAAGILSKNGRKITGRTMEFFLSKAGDDMENISSELEK 206

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L SY L   +IT++ V+ I        I ++I A    +   A+ L +  L  K P   +
Sbjct: 207 LISYTLGREVITDEDVETICTTQVTNKIFDMITAIAARQTRKAMDLYEDLLTLKEPPMRI 266

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           L    ++F  + ++  +     +    I  + +
Sbjct: 267 LFLIARQFNQILQVKDLM-GKGMDKSTIASRLK 298


>gi|315303226|ref|ZP_07873876.1| DNA polymerase III, delta subunit [Listeria ivanovii FSL F6-596]
 gi|313628408|gb|EFR96891.1| DNA polymerase III, delta subunit [Listeria ivanovii FSL F6-596]
          Length = 343

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 120/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L++EK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+ A   L     G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLQENDIHMSQSAINRLTELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC E   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFETKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIAGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + +++N + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSENKLNQALKR 309

Query: 313 IDHRIHLAR 321
           +    +  +
Sbjct: 310 LAEIDYEMK 318


>gi|83855267|ref|ZP_00948797.1| hypothetical protein NAS141_11066 [Sulfitobacter sp. NAS-14.1]
 gi|83843110|gb|EAP82277.1| hypothetical protein NAS141_11066 [Sulfitobacter sp. NAS-14.1]
          Length = 332

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 109/331 (32%), Gaps = 23/331 (6%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                +    + YG D   +  +     K  +     +   L  + A +++++     + 
Sbjct: 13  AKPDPTKTGLLIYGGDAMRVALKRQTFLKNLLGPNAEEEMRLTRIQAADLRRDAPMLLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           I +   F   +   +E+      +   L + +      +  I++ + ++KK + + K  E
Sbjct: 73  IKAVGFFPGPRAAFVEDA--NDNIAKILTDALADWQPGDAQIVVSAGDLKKTSKVLKAFE 130

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKL 191
              +  A   Y DN     + IE  L   + S   +A   L       D    R  + K+
Sbjct: 131 AHKNAFATPIY-DNPPDRAE-IERVLAEAKLSPEADAMGALSELARVLDPGDFRQMVDKI 188

Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           + Y   +   +T + V +    +    +++I++   + +  +   +     A  + +  L
Sbjct: 189 TLYKIGDAGPLTAEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTL 248

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +    + F+ L +I         +    I           R+      + W    +   L
Sbjct: 249 IIMATRHFRTLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETAL 295

Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIA 339
             +       R   +      ++ +  + +A
Sbjct: 296 TVLTDTDLTLRSAGQHAPTMALVERAFIRLA 326


>gi|332981263|ref|YP_004462704.1| DNA polymerase III subunit delta [Mahella australiensis 50-1 BON]
 gi|332698941|gb|AEE95882.1| DNA polymerase III, delta subunit [Mahella australiensis 50-1 BON]
          Length = 338

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 129/327 (39%), Gaps = 14/327 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++FYG ++ +  + + Q K  +        ++ VL+      +        ++  LF 
Sbjct: 17  RLYLFYGQEEYVKEQALAQLKDTLLDGAVRDMNMTVLDGETASVD--DVLACADTLPLFG 74

Query: 82  KKKIILIEN------LSTEKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKF 134
            +++++I N         +      L + I     +  ++ +   +I+KN  L K   K+
Sbjct: 75  GRRLVVIRNYAPLMGRGADTVDRKRLVDYIAHIPEHLCLVFVCRGDIRKNTALFKAIGKY 134

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +V+  +   D    L+  I  +     K+IS +  Q +    G +     +E+ K++ Y
Sbjct: 135 GAVVDFAQLKD--KELILWIRTAFKRLGKAISSQDAQYMAMMAGSELETLVHEIHKVADY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             E  +I  Q +  ++       I ++++A  Q  +  A+   +  L S      +L   
Sbjct: 193 AGEARVICAQDIDAVVTRISSANIFKMVDAIGQKDVDKALYHMNELLESGQSPIGMLSMI 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++F++L +  ++ +    S  +I  + +  I     N     L+ ++K  + E L    
Sbjct: 253 ARQFRILLQCRLLLD-KGYSAREISSQLKLPIF--AVNSYINQLKEFDKRQIVEALRHCL 309

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQT 341
                 +   + +  I+ + +L +   
Sbjct: 310 QSDLDMKSTSFNQAMILERLVLSLKNN 336


>gi|149185094|ref|ZP_01863411.1| DNA polymerase III delta subunit [Erythrobacter sp. SD-21]
 gi|148831205|gb|EDL49639.1| DNA polymerase III delta subunit [Erythrobacter sp. SD-21]
          Length = 347

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 93/304 (30%), Gaps = 10/304 (3%)

Query: 52  PFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN 111
           P   V +   E++ + +   +E  STSLF  K+ I       E    + L+ ++      
Sbjct: 46  PGERVEIPGAELRADPAKLGDEARSTSLFGDKRHIWSRVAGDEAH--EALKTLLETGDMG 103

Query: 112 H----IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
                 +I+ +      +   K+ EK    +    YP +   +   +          +  
Sbjct: 104 AGEAWPVIVVATSATDKSRTAKLLEKRKDAVVAMFYPPDLRSVTQSVRGMGDAAGLKLDS 163

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIIN 223
              + +      D   +++E+ KL++Y             +H+  I   +       ++N
Sbjct: 164 AVAERIARAANLDVRLAQSEVTKLATYLDATPQSPRPAAMEHLDAIGAASEEDGFASLVN 223

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           A + G+               +     L    ++   L +I               +K  
Sbjct: 224 AVLAGQGPKVATEIARMKQIGLNPVGTLLAIERRAAQLARISAALGNRRYQDLDKGEKAR 283

Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             I   +   + E ++ W    +     ++              + ++ Q +  IA+ A 
Sbjct: 284 LGIFWKEERDIAEQVQRWRGPKLDRLTLRLTELHRELLTNSQSSELLLAQGLTGIARVAG 343

Query: 344 KNNN 347
               
Sbjct: 344 AGRR 347


>gi|148265160|ref|YP_001231866.1| DNA polymerase III, delta subunit [Geobacter uraniireducens Rf4]
 gi|146398660|gb|ABQ27293.1| DNA polymerase III, delta subunit [Geobacter uraniireducens Rf4]
          Length = 331

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 121/311 (38%), Gaps = 10/311 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F +   K       ++  YG +  LI   + +  + +       F+L V    E 
Sbjct: 1   MKPEEFARALEKGDI--GPLYYMYGDEPYLIERGVKRLLEQVVSPDFRDFNLNVFYGNEC 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           +      ++   +  +FS+++ IL++         L+ L   +     +  +I +  +I 
Sbjct: 59  KG--EEIFSAAQTLPMFSERRAILVKKSHELSAATLEVLTGYVQNPSPSTCLIFQGEKID 116

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           +        E   +   +      +  L   I E +    K I   A  +L   +G +  
Sbjct: 117 QRKKF--FTEMKKTGELVEFKRPYENQLGPFIREEVKAYGKRIEPAAADLLAYMVGNNLQ 174

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              ++++K+++Y  +   IT   VK+I+ DT V  + E+ +A  +  +  A+      L 
Sbjct: 175 ELASQIEKVATYSGKRESITVGDVKEIVSDTKVDTVFELADAFGEKNLSKALRTLYTILR 234

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  +L    + F+ L ++  + +   I   +I +    N   + + +++++ R + 
Sbjct: 235 DGEAPLLVLAMLSRHFRQLWRVRELLDRK-IPTNEIGKAAGINPYFL-KKVIEQA-RNYR 291

Query: 303 KNLVRETLHKI 313
              ++    ++
Sbjct: 292 TTELKGVFERL 302


>gi|166032761|ref|ZP_02235590.1| hypothetical protein DORFOR_02476 [Dorea formicigenerans ATCC
           27755]
 gi|166027118|gb|EDR45875.1| hypothetical protein DORFOR_02476 [Dorea formicigenerans ATCC
           27755]
          Length = 328

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 114/311 (36%), Gaps = 11/311 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++ YG +  L  +  ++  K +     D  +        I  N+    +   +   F++
Sbjct: 16  AYLLYGEEAYLKKQYRDRLTKAVLPE-GDTVNYAHYEGKGI--NVPEIIDLAETMPFFAE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           K++I+IE+    K       + I         +   +E+ K + + K  +    V+ +  
Sbjct: 73  KRLIVIEDSGLFKNADAKFADYIKSMPETVCFVFVESEVDKRSKMYKAVKDTGRVVELG- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L+  +  ++    + I +   + +L+  G D      E++KL SY L    IT
Sbjct: 132 -RQDEKTLLLWLAGNIKREGRQIKQSTAEYMLSRTGTDMENLEREMEKLFSYTLGRNEIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              +  I        I ++I A    +   A+      LA K P   +L+   ++F+LL 
Sbjct: 191 VADIDAICTTQITNKIFDMIEAVATRQQRKALDYYYDLLALKEPPMRILYLLARQFRLLL 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
           +   +K+  N   +K     +  + P       +  R +    ++  +      +  +  
Sbjct: 251 Q---VKDLMNQGADKSTIAKKAGLHPFVAGKYMQQSRSFTMRELKGIMEEAADTEEAVKT 307

Query: 320 ARKKKYLEKNI 330
            R    +   +
Sbjct: 308 GRLSDTMSVEL 318


>gi|330895575|gb|EGH27883.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 320

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 117/297 (39%), Gaps = 13/297 (4%)

Query: 30  DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89
           D  L  E  +  +        D   +   +A     +  T      S SLF++++++ + 
Sbjct: 1   DPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFAERRLLELR 57

Query: 90  --NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYP 144
             +     K    L E   +   + +++I   ++  +    K  +          +  +P
Sbjct: 58  LPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWP 117

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
            +   L   I + L     + +++A +++ A + G+ +A+  E++KL     E+  IT +
Sbjct: 118 VDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVE 176

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            V+  + D+    +  + +A + G+  +A+ + +      + +  +L    ++ + L  +
Sbjct: 177 TVQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANM 236

Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318
                   +  +K+       I   ++ ++ ++L+  +     + L    +ID +I 
Sbjct: 237 SQQF-SQGVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 292


>gi|329897213|ref|ZP_08271953.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC3088]
 gi|328921368|gb|EGG28762.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC3088]
          Length = 338

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 119/301 (39%), Gaps = 13/301 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I E  +  ++       +   +   ++     +   F  + N+ SLF+
Sbjct: 18  PVYLVSGEEPLQIQECCDAIRQAARKQGCEERIVHHADSGSFNWD--DFSADSNALSLFA 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKN---NTLRKIAEKFT 135
            +++I +        K     L E   +      I++I ++++ K+   +   K  +   
Sbjct: 76  SQRLIEVRLGKQKAGKDGSAALVEYCERCEPGTDILLITTDKLDKSTLNSKWVKQIDSVG 135

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            VL I  +P     L   I++ L     SI  +A ++L   + G+ +A+  +++KL  Y 
Sbjct: 136 GVLRI--WPVEPAQLPSWIDQRLRQAGLSIESDALKLLSERVEGNLLAAAQDIEKLKLYA 193

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             +  I    V++ + D+    + ++ ++ + G   + I +          + A+   F 
Sbjct: 194 GNNSAIDLTTVQEAVADSARFNVYDLADSLLSGDAEHCIRMLRGVRDEGTDAAAVHWVFR 253

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++  LL  +       N +  + +Q     +   +++++  +++  +   +     ++  
Sbjct: 254 KEILLLVDLKTAMNEGN-NPAQAMQ--RFGVWKNRQHLVGSAVKRLSAKRLERATSQLAD 310

Query: 316 R 316
            
Sbjct: 311 A 311


>gi|83941789|ref|ZP_00954251.1| hypothetical protein EE36_06133 [Sulfitobacter sp. EE-36]
 gi|83847609|gb|EAP85484.1| hypothetical protein EE36_06133 [Sulfitobacter sp. EE-36]
          Length = 332

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 110/331 (33%), Gaps = 23/331 (6%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                +    + YG D   +  +  +  K  +     +   L  + A +++++     + 
Sbjct: 13  AKPDPTKTGLLIYGGDAMRVALKRQSFLKNLLGPNAEEEMRLTRIQAADLRRDAPMLLDA 72

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAE 132
           I +   F   +   +E+      +   L + +      +  I++ + ++KK + + K  E
Sbjct: 73  IKAVGFFPGPRAAFVEDA--NDNIAKILTDALADWQPGDAQIVVSAGDLKKTSKVLKAFE 130

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKL 191
              +  A   Y DN     + IE  L   + S   +A   L       D    R  + K+
Sbjct: 131 AHKNAFATPIY-DNPPDRAE-IERVLAEAKLSPEADAMGALSELARVLDPGDFRQMVDKI 188

Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           + Y   +   +T + V +    +    +++I++   + +  +   +     A  + +  L
Sbjct: 189 TLYKIGDAGPLTSEDVANCAPTSTEAEVDDILHVVAEARAGDIGPVMAKLQAQGVNAVTL 248

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +    + F+ L +I         +    I           R+      + W    +   L
Sbjct: 249 IIMATRHFRTLYRIAS-------NPGGQIWGVR------DRDRAMRQAKNWGAAKLETAL 295

Query: 311 HKIDHRIHLARK--KKYLEKNIIFQTILYIA 339
             +       R   +      ++ +  + +A
Sbjct: 296 TVLTDTDLTLRSAGQHAPTMALVERAFIRLA 326


>gi|289625787|ref|ZP_06458741.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 305

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 112/274 (40%), Gaps = 10/274 (3%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNIC 110
           F    + + +   +  T      S SLF++++++ +   +     K    L E   +   
Sbjct: 6   FDERQVFSADASFDWGTLLQAGASMSLFAERRLLELRLPSGKPGDKGAAALMEYCARPAE 65

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYPDNKIHLMDLIEESLLIGQKSISK 167
           + +++I   ++  +    K  +          +  +P +   L   I + L     + ++
Sbjct: 66  DTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWPVDVGQLPQWIRQRLSQAGLAATQ 125

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
           +A +++ A + G+ +A+  E++KL     E+  IT + V+  + D+    +  + +A + 
Sbjct: 126 DAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVADSARFDVFGLTDAVLN 184

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           G+  +A+ + +      + +  +L    ++ + L  +        +  +K+       I 
Sbjct: 185 GEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQGVPLDKVFSSARPPIW 243

Query: 288 PMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318
             ++ ++ ++L+  +     + L    +ID +I 
Sbjct: 244 DKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 277


>gi|153814296|ref|ZP_01966964.1| hypothetical protein RUMTOR_00505 [Ruminococcus torques ATCC 27756]
 gi|145848692|gb|EDK25610.1| hypothetical protein RUMTOR_00505 [Ruminococcus torques ATCC 27756]
          Length = 327

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 5/249 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +   +  + +     D  +  V     I  +I    +   +   F+ 
Sbjct: 16  IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I+ E+    K     L + I         +    E+ K N L K  +    ++ ++ 
Sbjct: 73  RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   +   +   +K +        L  +G D      EL+KL  Y +    IT
Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGKDRIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              +  I       +I E++NA        A+ L    LA K P   +L    ++++LL 
Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLLF 250

Query: 263 KIHIIKECS 271
            +  +    
Sbjct: 251 HVKGLMANG 259


>gi|315282384|ref|ZP_07870806.1| DNA polymerase III, delta subunit [Listeria marthii FSL S4-120]
 gi|313613966|gb|EFR87688.1| DNA polymerase III, delta subunit [Listeria marthii FSL S4-120]
          Length = 343

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 118/303 (38%), Gaps = 14/303 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEAVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  +      +S+ A   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKISENHMQMSQTAITRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + +++  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSERQLNQALKR 309

Query: 313 IDH 315
           +  
Sbjct: 310 LAE 312


>gi|289434761|ref|YP_003464633.1| hypothetical protein lse_1396 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171005|emb|CBH27547.1| holA [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 343

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 121/309 (39%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L++EK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L+     +S+ A   L+    G    + NELQKL 
Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLIENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYSFETKEITIQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S +++  K +  + P +  +  +  + +++  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309

Query: 313 IDHRIHLAR 321
           +    +  +
Sbjct: 310 LAEIDYEMK 318


>gi|317500014|ref|ZP_07958249.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898499|gb|EFV20535.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 327

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 5/239 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +   +  + +     D  +  V     I  +I    +   +   F+ 
Sbjct: 16  IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I+ E+    K     L + I         +    E+ K N L K  +    ++ ++ 
Sbjct: 73  RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   +   +   +K +        L  +G D      EL+KL  Y +    IT
Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGRDRIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
              +  I       +I E++NA        A+ L    LA K P   +L    ++++LL
Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLL 249


>gi|331087756|ref|ZP_08336682.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330409737|gb|EGG89173.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 327

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 5/249 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  +   +  + +     D  +  V     I  +I    +   +   F+ 
Sbjct: 16  IYLLYGEESYLKRQYRERLVRAMIPE-GDTMNYAVYEGKNI--DIKEVIDLAETLPFFAS 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I+ E+    K     L + I         +    E+ K N L K  +    ++ ++ 
Sbjct: 73  RRLIVFEDTGFFKNAGTDLADYITDIPPTTYFLFIEKEVDKRNRLYKAVKAKGHIVELT- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L   +   +   +K +        L  +G D      EL+KL  Y +    IT
Sbjct: 132 -VQDENTLRRWVLGLVKKEKKQMEGADAAYFLNKVGTDMENITQELEKLFCYTIGRDRIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              +  I       +I E++NA        A+ L    LA K P   +L    ++++LL 
Sbjct: 191 RDDIDQICVTQITNHIFEMVNAVAGKDQKRALDLYYELLALKEPPMRILFLMTREYRLLF 250

Query: 263 KIHIIKECS 271
            +  +    
Sbjct: 251 HVKGLMANG 259


>gi|254448579|ref|ZP_05062038.1| DNA polymerase III, delta subunit [gamma proteobacterium HTCC5015]
 gi|198261768|gb|EDY86054.1| DNA polymerase III, delta subunit [gamma proteobacterium HTCC5015]
          Length = 354

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 118/298 (39%), Gaps = 16/298 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I +    Q   + L     V++  G +     E ++  +       H    +  ++ 
Sbjct: 13  MAKIGAQNIQQHLARGLQ---PVYLVAGDEPLQSMETVDAIRAAARQAGHSLREVFEVDR 69

Query: 61  LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                + S      NS SLF++++I  + + + +  K+    + E   +   + I++I+S
Sbjct: 70  QF---DWSRLLESGNSMSLFAEQRILEVRLPSGAPGKEGGKAIVEYCQRPADDAILLIQS 126

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            +I K +      +     + +  +P     ++  I E +        ++A +++   + 
Sbjct: 127 GKIDKRSKNSAWFKALMQFVVVEVWPIKPAEIVRWIGERMASRGLQADRDAVRLVAQRVE 186

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN--AIML 236
           G+ +A+  E++KL    L    +T + V++ + ++      ++I++ + G+      + +
Sbjct: 187 GNMLAAAQEIEKLLL-LLGPGAVTAEQVREAVANSARYNPFDLIDSALMGEKAAPRCVRM 245

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
                   +    +L   + + + L  + +  E        ++ K    +   ++N++
Sbjct: 246 LQGLKGEGVQPPQVLAPLVNELRNLHAMALQVEAGR-PPAAVMGK----VWNQRKNLV 298


>gi|196248980|ref|ZP_03147680.1| DNA polymerase III, delta subunit [Geobacillus sp. G11MC16]
 gi|196211856|gb|EDY06615.1| DNA polymerase III, delta subunit [Geobacillus sp. G11MC16]
          Length = 347

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 125/325 (38%), Gaps = 18/325 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YGS+  L+ E   +  K         ++L V +  E     +    E  +   F 
Sbjct: 24  PLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAA--LEEAETVPFFG 81

Query: 82  KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           ++++ILI++        +K++   L  LE          I++  +   ++ +   + K+A
Sbjct: 82  ERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLA 141

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++ + V+  +   + +  L   +   +      IS EA   LL   G    A  NE+ KL
Sbjct: 142 KEHSEVVVAASLAEGE--LRAWVRRRIESQGAQISDEAIDALLRRAGTQLAALANEINKL 199

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +      +  + V+ ++  T    +  ++    +  I  A+      L +      +L
Sbjct: 200 ALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDLLENNEEPIKIL 259

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 F+LL ++  + +      +  I    K      +  L ++ R  ++  + + + 
Sbjct: 260 ALLAGHFRLLAQVKWLAQAGYGQTQ--IASALKVHPFRVKLALGQAARF-SEQELAKAID 316

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           ++    +   K   +++ +  + +L
Sbjct: 317 ELAAADYEV-KSGAMDRRLAVELLL 340


>gi|119504402|ref|ZP_01626482.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2080]
 gi|119459910|gb|EAW41005.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2080]
          Length = 348

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 115/329 (34%), Gaps = 14/329 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G +  ++ E  +  +            ++ ++      +         + SLF+
Sbjct: 18  RCYLVFGDETLIVEECADTVRAAARAAGCTEREIIEISG---AGDWQQLLQSAGALSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +K+I I   +     +    L+E +  +  + +++I + ++ K +   K   +     L
Sbjct: 75  DRKLIEIRLPSGKPGTEGSKALQEYLTLDTEDVLLVI-AGKVDKQSQRAKWFTRIDQEGL 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           AI  +P  +  L   +++ L        ++A Q+L   + G+ +A+  E+ KL    +  
Sbjct: 134 AIQIWPVGRHDLPGFLQQRLKSAGLRADRDAVQLLAERVEGNLLAAVQEVDKLRL-LVTS 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V   +          + +  + G    AI       A      A+L    +  
Sbjct: 193 EHVTVDTVLSSVLANARYSTFGLADTALSGDAVAAIRTLRGLQAESTQPPAVLWPLNRDI 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--LHKIDHR 316
            LL  +H           + + +  + +   +  ++Q +    N   +     L  +   
Sbjct: 253 TLLASLH-DDCAKGQPLSRAMNQ--RGVWRSRMPLVQGAAERQNAKGIARLQKLAFLADA 309

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACKN 345
                +K      I+ Q ++ +AQ     
Sbjct: 310 TVKGFEKGNPWD-ILDQVVVLLAQGPKSG 337


>gi|83589440|ref|YP_429449.1| DNA polymerase III, delta subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572354|gb|ABC18906.1| DNA polymerase III, delta subunit [Moorella thermoacetica ATCC
           39073]
          Length = 330

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 119/321 (37%), Gaps = 15/321 (4%)

Query: 22  FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V++FYGS+ G + E      +K +       F    L+  E+            +    
Sbjct: 17  PVYLFYGSE-GYLKERALKILEKKLIPPETGDFDYQELDGRELTGAEVIML--AATLPAM 73

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++++I++ + E    +   + + K      ++++ +  I K   L+ + E  ++   
Sbjct: 74  AERRLVVIKDPAGEIWQDEDFLKYLTKPEPATCLVLVVNGSIDKR--LKAVKEINSTGRV 131

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           + C P     L   + +       ++      IL    GGD   +RNEL K  +Y  +  
Sbjct: 132 VECSPLQGEDLAAWLIKEARQEGYNLPPATALILARAGGGDLRQARNELDKAMAYTGKPG 191

Query: 200 LITEQHVKDIICD-THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            IT   V+ +I +      I ++++A    K   AI      L        ++    ++ 
Sbjct: 192 TITPATVQALIPEIEAENTIFQLVDALGNRKPELAIGFLRQLLERGEAPLGIVAMLARQL 251

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           +L+ + H+  +  N+            + P     +    R ++  +  + L ++     
Sbjct: 252 RLIYRAHLGGDKRNL-------AARLGVKPFVARKVAAQARNFSLPVAGQALEELLKVDT 304

Query: 319 LARKKKYLEKNIIFQTILYIA 339
             +  +     ++ Q I  I 
Sbjct: 305 ALKTGQGEAGPLLEQAIWTII 325


>gi|138896086|ref|YP_001126539.1| DNA polymerase III subunit delta [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267599|gb|ABO67794.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 339

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 125/325 (38%), Gaps = 18/325 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YGS+  L+ E   +  K         ++L V +  E     +    E  +   F 
Sbjct: 16  PLYLLYGSESFLLQETYERLVKAALGEEEHEWNLAVYDCEETPVQAA--LEEAETVPFFG 73

Query: 82  KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           ++++ILI++        +K++   L  LE          I++  +   ++ +   + K+A
Sbjct: 74  ERRVILIKHPYFFTAEKDKEIEHDLAKLEAYFKAPAPFSIVVFFAPYDKLDERKKITKLA 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++ + V+  +   + +  L   +   +      IS EA   LL   G    A  NE+ KL
Sbjct: 134 KEHSEVVVAASLAEGE--LRAWVRRRIESQGAQISDEAIDALLRRAGTQLAALANEINKL 191

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +      +  + V+ ++  T    +  ++    +  I  A+      L +      +L
Sbjct: 192 ALFAGPGGTVEAEAVEQLVARTPEENVFALVEQVAKRNIPAALQTFYDLLENNEEPIKIL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 F+LL ++  + +      +  I    K      +  L ++ R  ++  + + + 
Sbjct: 252 ALLAGHFRLLAQVKWLAQAGYGQTQ--IASALKVHPFRVKLALGQAARF-SEQELAKAID 308

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           ++    +   K   +++ +  + +L
Sbjct: 309 ELAAADYEV-KSGAMDRRLAVELLL 332


>gi|119477449|ref|ZP_01617640.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2143]
 gi|119449375|gb|EAW30614.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2143]
          Length = 335

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 128/304 (42%), Gaps = 16/304 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +  L+ E  +  ++         FS  VL+ ++   + S      N+ SLFS
Sbjct: 18  PLYIVSGDEGLLVQECCDAIRRCCRKQG---FSREVLH-VDASFDWSDLLASANAMSLFS 73

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
           +KK+I +              L +       +++++I  N+++ ++T  K  +   +   
Sbjct: 74  EKKLIELRMPTGKPGDAGGKALTQYSGNISPDNVLLIICNKLEASSTRTKWYKAVEAAGA 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           ++ C+P +   L   I + L +       EA Q+L   + G+ +A+  E++KL  +  E+
Sbjct: 134 SVPCWPIDAKQLPRWISQRLNMVGLKADSEALQMLADRVEGNLLAAAQEIEKLRLFS-EN 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +I    +   + D     +  +I+  I G +  ++ +     A      ALL    ++ 
Sbjct: 193 NIIDADTIAAAVADNARYDVFGLIDRAIAGDVRGSLKILQGLKAEGTEPLALLWAITREL 252

Query: 259 QLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKID 314
           + L      I + + I  ++++Q     +   ++ + + +L+  N   +R+     ++ D
Sbjct: 253 RTLCHCAEQIAQGNGI--DRVLQGQR--VWDKRKAMTKSALQRLNTQQLRQLIIAANRTD 308

Query: 315 HRIH 318
             + 
Sbjct: 309 QSVK 312


>gi|89101075|ref|ZP_01173914.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911]
 gi|89084218|gb|EAR63380.1| DNA polymerase III subunit delta [Bacillus sp. NRRL B-14911]
          Length = 346

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 114/326 (34%), Gaps = 14/326 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  LI E       N+       F+L   +  E    I     +  +     
Sbjct: 16  PIYLLYGTEGFLINETKQLLINNVLAEDESDFNLSTYDLEET--PIEAALEDAETFPFMG 73

Query: 82  KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++I + N             +  L  LE  + +     II+  +   K ++  +   E
Sbjct: 74  DKRLIFLHNPSFLTSEKTKGKTEHNLAKLESYLKEPSPYSIIVFAAPYEKLDDRKKITKE 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                  +      +  L   I E        I ++A Q++L   G +      E+ KL+
Sbjct: 134 LKKKASVLEAKKLGEQELKVWIRERAAQNGVQIEEDAVQLMLTLAGTNLFMLTGEIDKLA 193

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E+ LI  + V  ++  +    I  +++  +  KI  A+ +    L        +L 
Sbjct: 194 LYADEEKLIDAEAVDKLVARSLEQNIFTLVDKVVHRKIDEALRIYYDLLKQNEEPIKILS 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+L   I+ +KE S   + +        + P +  +     +++    +   +  
Sbjct: 254 ILTGQFRL---IYQVKELSRRGYGQQQTAGYLKVHPFRVKLAAGQAQLFGDEELSRIMKL 310

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYI 338
           +    +  +     ++ +I   +  +
Sbjct: 311 LAEADYEMKTGGMNKEMLIEMFLFRL 336


>gi|254490458|ref|ZP_05103644.1| DNA polymerase III, delta subunit [Methylophaga thiooxidans DMS010]
 gi|224464202|gb|EEF80465.1| DNA polymerase III, delta subunit [Methylophaga thiooxydans DMS010]
          Length = 339

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 114/300 (38%), Gaps = 11/300 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L+ E   + ++ +     +   +  + +     + S       + SLF+ 
Sbjct: 19  VYLIYGDEALLVEEAAEKVRQQVRQAGANDREVWHVESRF---DWSQIKWHEQTLSLFAS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139
           +++I I   + S  K   + L   + +   +  ++I S +I   +   K   E       
Sbjct: 76  QRLIEIRLPSGSPGKDGGEALRRFVAEPPADTTLLIISGKIDARSQKAKWFTELDRLGAT 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I  +P + + L   I + +       +K+   ++   + G+  A+  E+ KL      D 
Sbjct: 136 IPVWPIDIVQLPSWINQRMQQKGLKSNKQFASLIAERVEGNLFAAAQEVDKLQLLS-TDG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +TE  +   + D        +++  + G+      + +   A  +   A+        +
Sbjct: 195 ELTESLILQSVADNARFEAFGLMDTVLMGQSAKIPRIIERLRAEGVDILAVFSAVAWSLR 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKIDHR 316
            +  +    +      E++    +  +    +++++++L+ +++       + + +ID  
Sbjct: 255 RMVDMSEQLQ-QGAQLERVFASQKPPVWDKNKSVMRQALQRYDQQHWRLCLQQMAEIDQA 313


>gi|313633200|gb|EFS00078.1| DNA polymerase III, delta subunit [Listeria seeligeri FSL N1-067]
          Length = 343

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGDEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L++EK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+ A   L+    G    + NELQKL 
Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLHENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYSFETKEITIQVVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S +++  K +  + P +  +  +  + +++  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309

Query: 313 IDHRIHLAR 321
           +    +  +
Sbjct: 310 LAEIDYEMK 318


>gi|291522753|emb|CBK81046.1| DNA polymerase III, delta subunit [Coprococcus catus GD/7]
          Length = 327

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 112/313 (35%), Gaps = 6/313 (1%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L  +  ++  K   I   D  +        I  +        ++   FS
Sbjct: 15  NVYLLYGDEAYLRNQYRDKL-KKAMINEGDTMNFSCFEGKGI--DEKELTAMADTVPFFS 71

Query: 82  KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             ++I++EN    K    + L E +        I+   +E+ K + L K          +
Sbjct: 72  DYRLIIVENSGFFKTSGHEALAEYMKHIPETTCIVFVESEVDKRSKLFKAVSSTGYAANL 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +   D    LM  +   +    K I ++  Q  L  +  D    R E++KL  Y     +
Sbjct: 132 TMPGD--KQLMLWLGGIVKRENKMIQEQTMQYFLQLVEHDMNGMRQEMEKLICYVGHRQV 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I +  V  + C      + ++I+A  +     A+ L D  +A K P   +L+  +++F  
Sbjct: 190 IEKADVDAVCCVFVENKVFDMISAVAEKNQKRAMQLYDDLVALKEPPMRILYLMIKQFNT 249

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L ++  +      +     +   ++ I  +   L     I           +++  I   
Sbjct: 250 LYEVRDLAVKGYPASAIAEKTAIRDFIVKRNISLGRHFEIAALREAVAYGTELEEEIKTG 309

Query: 321 RKKKYLEKNIIFQ 333
           R    L   ++ Q
Sbjct: 310 RITDRLAVELMIQ 322


>gi|226324469|ref|ZP_03799987.1| hypothetical protein COPCOM_02250 [Coprococcus comes ATCC 27758]
 gi|225206917|gb|EEG89271.1| hypothetical protein COPCOM_02250 [Coprococcus comes ATCC 27758]
          Length = 267

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 8/203 (3%)

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            F+++++I++EN    K     L E +        +I   +E+ K   L K  ++   ++
Sbjct: 7   FFAERRLIVLENTGFLKNATPELAEYLKNMPETTYMIFVESELDKRGKLYKAIKEKGHIV 66

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     ++  L+  I       +  +S+ A + LLA  G D      EL+KL  YC+  
Sbjct: 67  ELK--RQDEKTLIRWILGMAKKEKLQMSEAAVRYLLAKTGNDMENLGQELEKLFCYCMNH 124

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   + +I       +I ++++A    +   A+      L  K P   +L+   ++F
Sbjct: 125 TEITAADIDEICTTQIGNHIFDMVDAVAAKEQKKALDYYYDLLTLKEPPMRILYLLTRQF 184

Query: 259 QLLEKIHIIKECSNISFEKIIQK 281
                  I+ E   +    I QK
Sbjct: 185 ------RILMEVKEMDRTGIPQK 201


>gi|313637793|gb|EFS03143.1| DNA polymerase III, delta subunit [Listeria seeligeri FSL S4-171]
          Length = 343

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 14/309 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L++EK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   IE  L      +S+ A   L+    G    + NELQKL 
Sbjct: 133 LKKTATIIEAKRPNENELKKWIEAKLHENNIQMSQAAINRLMELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E   IT Q V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYSFETKEITIQVVESLVVRSLEQNIFLLLDKMIAMDIGGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S +++  K +  + P +  +  +  + +++  + + L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQVASKLK--VHPFRVKLASKQAKNFSEIELNQALKR 309

Query: 313 IDHRIHLAR 321
           +    +  +
Sbjct: 310 LAEIDYEMK 318


>gi|192360566|ref|YP_001980975.1| DNA polymerase III subunit delta [Cellvibrio japonicus Ueda107]
 gi|190686731|gb|ACE84409.1| DNA polymerase III, delta subunit [Cellvibrio japonicus Ueda107]
          Length = 349

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 115/327 (35%), Gaps = 16/327 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +   +     TK L     +++  G +  LI E  +  +          F    L  
Sbjct: 1   MPKLRPEQLAAALTKQLA---PIYLVSGDEPLLIQEACDSIRAAARKQG---FGERELYH 54

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKS 118
            +         +  NS SLF++KKII +   S     K    L+E       +++++I +
Sbjct: 55  ADSNFEWGQLLSAANSLSLFAEKKIIELRMPSGKPGDKGGKILQEYAQSPAPDNLLLIVT 114

Query: 119 NEIKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            ++       K  +        I  +P    +L   I + L         +A ++L + +
Sbjct: 115 EKLDGAAQKSKWFKALEDAGQHIQVWPITAGNLPRWIGQRLQQAGLQADPDAIELLASRI 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  E++KL         I  + +   + D+    +  + +  + G    A+   
Sbjct: 175 EGNLLAAVQEIEKLKLLA-NQGRINYELMASAVADSARYDVFGLTDKALHGDARAAVKTL 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                       +L    +  ++L ++          F+   ++    +   ++ +++ +
Sbjct: 234 HGLKTEGTEPITILWAITRDIRILIQV-SQAVGQGKHFDWAAKQAG--VWDKRQPLIKAA 290

Query: 298 LRIWNKNLVRETLHK---IDHRIHLAR 321
           L       +++ L K   ID  I   R
Sbjct: 291 LNRLKPAQLQQLLRKANGIDKAIKGMR 317


>gi|39997305|ref|NP_953256.1| DNA polymerase III subunit delta [Geobacter sulfurreducens PCA]
 gi|39984196|gb|AAR35583.1| DNA polymerase III, delta subunit, putative [Geobacter
           sulfurreducens PCA]
 gi|298506243|gb|ADI84966.1| DNA polymerase III, delta subunit [Geobacter sulfurreducens KN400]
          Length = 337

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 109/319 (34%), Gaps = 10/319 (3%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++S +      +       ++ FYG +  L+   + +  + +       F+L V    E 
Sbjct: 1   MKSDELDNAIERGEIA--PLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNES 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + +         +  +F+ ++++L++         L+ L   +        ++   ++I 
Sbjct: 59  KGD--DIATAAQTLPMFADRRMVLVKRAGDLSAAALETLAACVADPAPQTCLLFVGDKID 116

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K        +       +      +  L   I +      K I   A ++L+  +G +  
Sbjct: 117 KRKKF--FLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGAAVEMLVYLVGNNLG 174

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
               +L+K++++      +T + V++++ DT V  + ++ NA  +  +  ++      L 
Sbjct: 175 ELATQLEKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILR 234

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    + F+ L ++  +        E   +             + +  R + 
Sbjct: 235 DGEAPLMLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLK---GVMDQARNFT 291

Query: 303 KNLVRETLHKIDHRIHLAR 321
              +R     +       +
Sbjct: 292 VADLRRVFEGLYAADLALK 310


>gi|226943039|ref|YP_002798112.1| DNA polymerase III subunit delta [Azotobacter vinelandii DJ]
 gi|226717966|gb|ACO77137.1| DNA polymerase III, delta subunit [Azotobacter vinelandii DJ]
          Length = 346

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 132/329 (40%), Gaps = 13/329 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L  E  +  +            +   +A     + +       S SLF+
Sbjct: 18  PVYVVSGDEPLLCQEACDAIRTAARAQGFSERQVFNADAGF---DWNQLHEAGASLSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTS 136
           +K+++   I N     K    + E + +   +++++I   ++      +   K       
Sbjct: 75  EKRLLELRIANGKPGDKGAAAILEYLARPAEDNLLLIDLPKLDAATQKSKWAKALLDAPQ 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V  +  +P +   L   I + L     + S+EA +++ A + G+ +A+  E++KL     
Sbjct: 135 VQFVQVWPVDAQQLPQWIRQRLAQAGLAASQEALELIAARVEGNLLAAAQEIEKLKLLA- 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E+  I+   V+  + D+    +  +++A + G+  +A+ + +      + +  +L    +
Sbjct: 194 ENNQISADTVQAAVADSARFDVFGLLDAALAGQAAHALRMLEGLRGEGVETPVILWALAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + + L  +   +    +  EK   +    I   +R +L ++L+ ++     + L  +D +
Sbjct: 254 ELRQLAGL-AQQYAQGVPLEKAFAQARPPIWEKRRPLLAKALQRYSATRWSQLL--LDAQ 310

Query: 317 IHLAR-KKKYLEKNIIFQTILYIAQTACK 344
           +  A+ K +   +       L +A    +
Sbjct: 311 LIDAQIKGQAEGEPWNGLARLALAIAGQR 339


>gi|154482560|ref|ZP_02025008.1| hypothetical protein EUBVEN_00227 [Eubacterium ventriosum ATCC
           27560]
 gi|149736585|gb|EDM52471.1| hypothetical protein EUBVEN_00227 [Eubacterium ventriosum ATCC
           27560]
          Length = 283

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 105/272 (38%), Gaps = 8/272 (2%)

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +I+   +   +   F++ ++I++EN    K   + L E +       I +   +++ K +
Sbjct: 12  DINEVIDSAETVPFFAEYRLIVMENTGLFKSGGEQLAEYMKTIPSTTIFLFVESDVDKRS 71

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            + K  +    +  I      +  +            K I+K     L+A++G D     
Sbjct: 72  KMYKAVKSAGYICEI--NRQTENDIAIWAARIFDYNGKKITKANMSYLIASVGTDMEVLS 129

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E++KL SY L   +I+++ +  +      + I ++++A         +      +A K 
Sbjct: 130 REIEKLISYALNKNVISKEDIDAVCIKQLNVRIFDMMDAISVKNQKKTLDCYYELIAEKE 189

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           P   +L    ++F L+ +         ++ E++            + I     R ++   
Sbjct: 190 PPMRILFMISRQFNLMLQAK-DLSSRGMNREQVAHTMGVQSFIAGKCI--NQCRNFSMAE 246

Query: 306 VRETL-HKIDHRIHLARKKKYLEKNIIFQTIL 336
           ++  L   ++    +  K   +++NI  + +L
Sbjct: 247 LKSGLAESVNTESLI--KSGMMDENIGVEMLL 276


>gi|229828445|ref|ZP_04454514.1| hypothetical protein GCWU000342_00506 [Shuttleworthia satelles DSM
           14600]
 gi|229793039|gb|EEP29153.1| hypothetical protein GCWU000342_00506 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 112/316 (35%), Gaps = 13/316 (4%)

Query: 21  HFVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           H  ++ YG  D   +       +          FS +  +  +++       +   +   
Sbjct: 23  HRAYLLYGEEDYLKLQYRDRLVRALTGGQESMNFSRMEGDDCDLKG----LIDLAQTMPF 78

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           F+  + ILI          D L   +       ++I     ++K+    K   K+     
Sbjct: 79  FADHRCILIMESGFFNSSNDELAAYLETVPETAVLIFVEKAVRKSTRPFKAITKYGYAC- 137

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                 ++  LM  I   L   +K++S EA +      G +      E +KL +YCL+  
Sbjct: 138 -EFLKPDERTLMQWIGGRLSKEKKTMSPEAWREFFLRSGENMENMEREYEKLVTYCLDRE 196

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I    V+ I        + ++I+A  +      +      +A+K P   +L    ++F 
Sbjct: 197 RIELDDVRAITSRPLNNRVFDLIDAMARRDGKLLLEHYADMIAAKEPPLRILSLIERQFI 256

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHR 316
            +  +       ++S  +I QK    + P     ++ S   +++  +R+ L     ++ R
Sbjct: 257 QMLAVR-QMSSDHLSDREIGQKI--AVSPYIVGKIRRSSESYSQEQIRQLLADASDMEER 313

Query: 317 IHLARKKKYLEKNIIF 332
           I   +    L   ++ 
Sbjct: 314 IKTGKITDRLGVEVLM 329


>gi|225567877|ref|ZP_03776902.1| hypothetical protein CLOHYLEM_03950 [Clostridium hylemonae DSM
           15053]
 gi|225163355|gb|EEG75974.1| hypothetical protein CLOHYLEM_03950 [Clostridium hylemonae DSM
           15053]
          Length = 326

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG +  L  +  ++  + +     D  +        I   I+   +   +   F++
Sbjct: 16  VYLLYGEEAYLKKQYKDKLTRAMLPD-GDTVNYAYYEGKGIH--ITELIDLAETMPFFAE 72

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I++EN    K     L + I         +   +E  K   + K  +    V+ +  
Sbjct: 73  RRLIVVENSGLFKNAAPELADYIRSMPGTACFLFVESETDKRGKMFKAVKDKGRVVEMG- 131

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              ++  L+  +  ++    K I +   + L++  G D      EL+KL  Y ++   IT
Sbjct: 132 -RQDEKTLIMWVGGNVKREGKQIKESTVRYLISKTGTDMENLDRELEKLFCYAIDRSEIT 190

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              +  +        I ++I A        A+      LA K P   +L+   ++F+LL 
Sbjct: 191 PADIDAVCTTQITNKIFDMIEAVAAKHQKKALDYYYDLLALKEPPMRILYLLSRQFKLLY 250

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHL 319
           ++  +         +I +    +     + I     R +  + ++  +      +  +  
Sbjct: 251 EVKDLL-GRGFDKAQIAKTAGLHPFVAGKYI--SQSRTFAVHELKRIMEDAADTEELVKT 307

Query: 320 ARKKKYLEKNI 330
            R    +   +
Sbjct: 308 GRLNDVMSVEL 318


>gi|296282120|ref|ZP_06860118.1| DNA polymerase III delta subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 349

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 108/327 (33%), Gaps = 13/327 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F   G D        +     I     D    V L+  E++++     +E  S+SLF   
Sbjct: 30  FFLCGPD----ESAASAAAATIVGNLKDAGERVDLSGAELRRDPVRLADEARSSSLFGDA 85

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           + IL+     E    D L+  +        +++ +      +   K+       L    Y
Sbjct: 86  RHILVRATGEEAH--DALKLHLEAEGEACPVLVVAVNATDKSRSAKLVAGAKGTLVAMFY 143

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
           P N   + + + +        +  +  Q +    G DR  +  E++KL+ Y L+    T 
Sbjct: 144 PPNLGDMANTVRDLADRAGLRLGGDLAQRIARASGLDRRLAEAEVEKLALY-LDAAPDTP 202

Query: 204 QHVKDIICDTHVLYIEE-----IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
           +       D      EE     ++NA + G                +    +   F ++ 
Sbjct: 203 KTADAAAWDAIGASSEEDGFMPLVNAALGGHAKRLPGELARLHTLALNPVGVALAFERRA 262

Query: 259 QLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
             L ++        ++      QK  + I       L E LRIW    +   + ++    
Sbjct: 263 AHLAQLSARMRPGEDVGSFVDAQKRARRIFFKDERDLAEQLRIWRGKRLDRLVSRLTALH 322

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344
                     + ++ Q I +IA+ A +
Sbjct: 323 QALLANSQQAELLLSQEIAWIARVASR 349


>gi|116872910|ref|YP_849691.1| DNA polymerase III subunit delta [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741788|emb|CAK20912.1| DNA polymerase III delta subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 343

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 118/303 (38%), Gaps = 14/303 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   +     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILDGEEVEFNYANLDLEEM--PVEMVIQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L++EK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPIFLTSEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +   I     N+  L   +E  L      + +EA   L+    G    + NELQKL 
Sbjct: 133 LKKTATVIEAKRPNENELKKWLEAKLTENNMQMEQEAIIRLIELTSGQLTTAMNELQKLM 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC +   IT Q+V+ ++  +    I  +++  I   I  A+ +    L  K     +L 
Sbjct: 193 LYCFDSKKITIQNVESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++ ++ E    S ++   K +  + P +  +  +  + +++  +   L +
Sbjct: 253 LISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFSELQLNRALKR 309

Query: 313 IDH 315
           +  
Sbjct: 310 LAE 312


>gi|294055838|ref|YP_003549496.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615171|gb|ADE55326.1| DNA polymerase III, delta subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 364

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 107/263 (40%), Gaps = 17/263 (6%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINSTSLFSK 82
           G D  L+ E   ++ +  +    D  S  V++       E+++ +  F + + + S+F +
Sbjct: 11  GDDDYLVSERGKEWFRAQTKDLMDDLSKEVIDGRAGNYAEVEEALGRFRSAVQTLSMFGE 70

Query: 83  KKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKI 130
           +K++ +++                 +LD L+  +   +     ++I +  + K     K 
Sbjct: 71  RKVVWLKDVNFLADSVTGRAQGTLDLLDDLKGFLGGIDPSGVGVLITAQPVDKRRAFFKW 130

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K     AI+   D+   L  LIEE        IS++A Q+L+  + G+      E +K
Sbjct: 131 IQKTAEFTAIAGGKDSAQALAALIEEQCKAAGAQISRDAVQLLIGKVNGNTRLIVEECRK 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L ++  E   I E+ V D++ +       E  +A    K+   +        +   S  L
Sbjct: 191 LCTFVGEGGSIGERLVVDLVPNFGDADFFEAADAFFSLKLDWTLEALRRHFFTNNDSRGL 250

Query: 251 LHGFLQKFQLLEKIHIIKECSNI 273
           L     + +LL ++ ++ +   I
Sbjct: 251 LGSLQSRNRLLIQLRVLLDAKAI 273


>gi|241896585|ref|ZP_04783881.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC
           33313]
 gi|241870177|gb|EER73928.1| DNA polymerase III subunit delta [Weissella paramesenteroides ATCC
           33313]
          Length = 347

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 126/321 (39%), Gaps = 27/321 (8%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NEINSTSL 79
           + ++   G D+ LI    N  ++      H     + L   ++ +   +   ++  S   
Sbjct: 24  YPIYFVQGQDQYLI----NLVREKFLTIIHPDDRALNLAQFDLTEVPLSLAIDDAKSVPF 79

Query: 80  FSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
           F  ++++++            S  +  ++ L + I +     I++I +   ++     + 
Sbjct: 80  FGNQRVVILDNPYFLTGERQKSNLEHHVEDLVDYIKQPEPQTIVVIFAPYDKLDNRKKVT 139

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++    L+     D    +   I++ +      I+  AKQ L+           +EL
Sbjct: 140 KLLKEQARYLSFVNLSD--KDINRFIDQRVNEAGYFINSAAKQELIRLTNSSLTQIMSEL 197

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL  Y L +  I    VK+++  T    I ++I+  ++G++  A+ L    L++     
Sbjct: 198 DKLMLYTLSEKQINVSDVKELVTHTLSENIFDLIDCLLKGQLTRAVNLYHELLSTGEEPL 257

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L    + +F+LL    +  + S  S + I  + +  + P +  + +  +R ++   +  
Sbjct: 258 RLHGALIGQFRLL----LQVKSSEKSEKGIASELK--VHPYRVKLAKRVVRKFSYVRLAS 311

Query: 309 T---LHKIDHRIHLARKKKYL 326
               L  ++ ++    +   L
Sbjct: 312 AYLGLVSMEEQLKSTSRDPEL 332


>gi|120555657|ref|YP_960008.1| DNA polymerase III, delta subunit [Marinobacter aquaeolei VT8]
 gi|120325506|gb|ABM19821.1| DNA polymerase III, delta subunit [Marinobacter aquaeolei VT8]
          Length = 337

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 121/310 (39%), Gaps = 14/310 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNISTFWNEINSTSLFS 81
           V++  G +  LI E  +Q +       +    L  L    + Q + +T  +E N+ SLF+
Sbjct: 19  VYLISGDEPLLIQECCDQVRAAAREAGY----LDRLTFHADNQFDWNTVADECNALSLFA 74

Query: 82  KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVL 138
           +K+ I I +L T K       LE+++     + I+++ S  +    T RK   E     +
Sbjct: 75  EKRRIEI-HLPTGKLGDGRRVLEQVLQSPPEDVILLLISARLDAAETKRKWYKELQGHGV 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +P         +++       S+++ A  IL   L G+ +A+  EL +L+      
Sbjct: 134 HVPIWPVEGDKFPGWLQQRATAKGLSLTRGALDILAERLEGNLLAASQELDRLTLLTNG- 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I E+ V+  + D+      E++   + GK  +A  +             LL   ++  
Sbjct: 193 KTIDEETVEQAVQDSARFNGFELVTELLSGKAVHACRMIGVLEQEGENPLGLLTVLVRDL 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            L+ ++             +    ++ +  P +   +Q++ R  +   + + ++      
Sbjct: 253 HLIVELKTALPQGENPAGFL---KKRGVFQPKRSAAVQQAARRLSLAQLHQAINLCSQTD 309

Query: 318 HLARKKKYLE 327
             A+    L 
Sbjct: 310 RAAKGFDSLS 319


>gi|296123825|ref|YP_003631603.1| DNA polymerase III, subunit delta [Planctomyces limnophilus DSM
           3776]
 gi|296016165|gb|ADG69404.1| DNA polymerase III, delta subunit [Planctomyces limnophilus DSM
           3776]
          Length = 328

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 109/303 (35%), Gaps = 11/303 (3%)

Query: 37  LINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE- 94
             N   + I +    D  SL  L     +       +E++  S++  +++I+IE      
Sbjct: 28  RQNVLARLIELALGGDDASLTRLTGKTAEW--PNVKDELSMVSMWGDRRLIVIEEADDFV 85

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
            K    +E+   +     I++++   + K   + K+    +  L + C       L   +
Sbjct: 86  SKYRGSIEKYFEQPAKKSILLLEVKSLPKTTRIAKLC--ASKGLEVDCSELKGPALNKWL 143

Query: 155 EESLL-IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
                    K++++EA  +L+  +G D      EL KLSSY      I  + V+ ++   
Sbjct: 144 TNLAKVQFGKTLTREALSLLVELVGEDLGTYEQELSKLSSYTGARTQIELEDVRSMVGGW 203

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
                  + +A   G++  ++   +  L +      LL G    ++ L      +   ++
Sbjct: 204 TTETTWSMTDAARDGQLARSLECLEDLLRANEAPQKLLGGISFVYRKLAI--AAELSRSM 261

Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333
              + +++    + P  +  ++   R   +         +       +    L + I  +
Sbjct: 262 PLPQAMKEAG--VFPRDQGAVEAYFRRIGRARADRLYQILLEADLGLKGGSKLPERIQME 319

Query: 334 TIL 336
            +L
Sbjct: 320 RLL 322


>gi|163816653|ref|ZP_02208016.1| hypothetical protein COPEUT_02843 [Coprococcus eutactus ATCC 27759]
 gi|158447910|gb|EDP24905.1| hypothetical protein COPEUT_02843 [Coprococcus eutactus ATCC 27759]
          Length = 338

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 122/335 (36%), Gaps = 19/335 (5%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I+S +F +           +++ YG ++ L+ +  ++    ++    D  + +      +
Sbjct: 20  IKSGEFAK-----------IYLLYGKERYLVNQYRDKLLGALT-DKDDNLNFMKFAGNGV 67

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             N     +  N    F+ ++++L+EN    K   +   + +I      ++I    ++  
Sbjct: 68  --NTQEIIDFSNEMPFFADRRVVLVENSGLFKSSNEEFAKKLINIENTSVVIFVEMDVDT 125

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              L K  E   +  A+     ++  ++  ++      + + +  A   ++ +   D   
Sbjct: 126 RYKLYK--EVDKNGEALEFVTPDEKMMVTWVKSIFRDAEVATTDTAIYRIIESAKMDMNC 183

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
            +NE+ K+ SY  +   ++E  V  +        + ++I+  I  +   A  +    L +
Sbjct: 184 IKNEVDKMISYAGDTKQVSEYDVDLLCSQDAESKVYQMIDLIIAKQKEKAARMYHDLLEN 243

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
           K     +    ++++  L  + +               +    +   +N  +   R +  
Sbjct: 244 KEAPIMINSCIMRQYNKLLLVKMAMAEGAQDASLAKLTSGP--VWAVKN-YKAQCRPYTV 300

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             ++  + K +   +  +  + ++   +   I+ +
Sbjct: 301 EQLKGIVEKCNDMDYKLKTGQVMDAAALEVMIVEL 335


>gi|299822874|ref|ZP_07054760.1| DNA-directed DNA polymerase III delta subunit [Listeria grayi DSM
           20601]
 gi|299816403|gb|EFI83641.1| DNA-directed DNA polymerase III delta subunit [Listeria grayi DSM
           20601]
          Length = 342

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 120/311 (38%), Gaps = 18/311 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G++  +I E   +    I    +  F+    +  E    + T   E  S   F 
Sbjct: 15  PLYLIIGTEDYIINETKKKLSDQILEAENSEFNYANFDLEET--PVETVIEEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKVL------DCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130
            +++++  N   L+ EK         + LE  + +     ++ I +   ++ +   L K+
Sbjct: 73  DRRLVIASNPVFLTAEKTKSKIEHRTENLERYLAEPAPYSVLCIIARTPKLDERKKLTKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K      I   P  +  L   +   +   +  I   A   L+     +   S NELQK
Sbjct: 133 IKKQ--ATVIEAKPPAEKELKQWLMNEIAKAEMKIEPAALDRLIELTNINLTTSMNELQK 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  E+ L+T   V+ ++  +    I  +++  I   I  A+ +    L  K     +
Sbjct: 191 LMLYGQEERLVTVDSVEQLVVRSLEQNIFLLLDKMIAFDIAGALRIYYDLLKQKEEPIKI 250

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +F+LL ++ I+ E    S +++  K    + P +  +     R +++  +   L
Sbjct: 251 MALIASQFRLLNQLKIL-EKQGYSQQQMATKLR--VHPFRVKLASRQARNFSQPDLDFIL 307

Query: 311 HKIDHRIHLAR 321
            ++    +  +
Sbjct: 308 KQLAAIDYELK 318


>gi|282889594|ref|ZP_06298135.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500517|gb|EFB42795.1| hypothetical protein pah_c002o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 341

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 125/326 (38%), Gaps = 16/326 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            +++    D     +  N  +K +       P++ V   A  +   I     E+N+  +F
Sbjct: 23  PIYLLITPDDFERQKAENLLRKEVLGGQMSSPYAFVQKEAESL--PIQELKEELNTGDMF 80

Query: 81  SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           + ++++LI++L   KK     LEE  +       ++  +    +   L K  EK   +  
Sbjct: 81  ASRRVVLIQHLDALKKPQREYLEEYCLHPSAQLCLVCSAATFNRTTQLYKKMEKAGVIFD 140

Query: 140 IS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +     +   K  +  +I ++  +  KS+   A Q+L+  +G +R     EL+KL  Y  
Sbjct: 141 VEEKKPWELEKYLIEQVIADA-RVEGKSMDSSAAQLLVKQVGTNRSMLHQELEKLCCYVG 199

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT Q ++ I  +     I ++ +A  Q  I + I +    L    P   LL     
Sbjct: 200 NRTSITTQDIQAICANVPSETIWQLGDAIFQRDIKSVIRIGLALLDEGTPFLILLRQIRS 259

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL---RIWNKNLVRETLHKI 313
           +FQ   ++  I        +      +     MK  IL+++L   R +     ++ +  I
Sbjct: 260 QFQTKYQLCSIHAAGGSPADMA---AQFP--YMKGAILEKNLSMARAYGLERFKKGMMLI 314

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIA 339
           D    LA+        +  +  + + 
Sbjct: 315 DETELLAKNSGSDTACLAERLFIKLT 340


>gi|294501311|ref|YP_003565011.1| DNA polymerase III subunit delta [Bacillus megaterium QM B1551]
 gi|295706658|ref|YP_003599733.1| DNA polymerase III subunit delta [Bacillus megaterium DSM 319]
 gi|294351248|gb|ADE71577.1| DNA polymerase III, delta subunit [Bacillus megaterium QM B1551]
 gi|294804317|gb|ADF41383.1| DNA polymerase III, delta subunit [Bacillus megaterium DSM 319]
          Length = 338

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 130/326 (39%), Gaps = 19/326 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  +  ++ ++            F+L + +  E    I     +  +     
Sbjct: 16  PVYLIHGVNAFMSKKIRDKIVDYTLNEEDKEFNLSLYDLEETS--IDQVLEDAETLPFLG 73

Query: 82  KKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
            K++++ +N +    EK        L  L++ + +      +I+ +   ++ +   + K+
Sbjct: 74  DKRVVVAKNAAFLTAEKSKDKVEHDLAKLQQYVEQPPSFSTLILLAPYEKLDERKKITKL 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K      I      +  +   I   L     ++ ++A  +L+  +G +     NE++K
Sbjct: 134 LKKQ--AAYIEANEFGEKEMKQWIHNLLSKDGVNMDEDAVTLLIQLVGLNVTLVTNEIEK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +  Y  +D +IT++ V  ++  T    +  +I+A IQ K+  A+ +    L +      +
Sbjct: 192 MVLYVGQDGVITKEVVLKLVAKTLEQNVFTLIDAVIQRKVSTALNMYQDLLRNNEEPIKI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L     +F+L+              ++I Q  +  + P +  I  +  R + +  ++E L
Sbjct: 252 LSLLATQFRLIYHTK-QLSSQGYGQQQIAQTIK--VHPFRVKIALQQSRSFEEQQLKEIL 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336
             +    +   K   ++K +I Q  L
Sbjct: 309 KDLAEADYEM-KTGKMDKALILQLFL 333


>gi|56963415|ref|YP_175146.1| DNA polymerase III subunit delta [Bacillus clausii KSM-K16]
 gi|56909658|dbj|BAD64185.1| DNA polymerase III delta subunit HolA [Bacillus clausii KSM-K16]
          Length = 340

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80
            V+  YG+++ LI + + +  + +        + + L    +Q         E  +   F
Sbjct: 17  PVYFLYGTERYLIEQFLQKASEALFAGEEGEMNDIRL---RLQDTPLGEVVEEAETVPFF 73

Query: 81  SKKKIILIEN--LSTEKKV-------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           SK+K+++I++  L+T +KV       +  LE  +       ++++ +   K +   +   
Sbjct: 74  SKRKLVVIQDFYLATSQKVATKLEHDIPALEAYLDSPAQETVLVVVAPYEKLDERKKITK 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +      AI   P ++      +E        +I ++AKQ+L    G + +    EL+K 
Sbjct: 134 KLKKQTSAIDVNPFDEKETFAWMEAIAKQEGVAIEQDAKQLLYKRTGPNLMLLHRELEKC 193

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             Y  +   +T   V +++ +T    +  +I+ T +G+  +A+ L    L  K    A+L
Sbjct: 194 MLYSKDGDPVTASIVDELVAETVEQSVFTVIDYTAKGRAGDAVRLYHQLLRQKEEPLAIL 253

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               ++F+   ++           E   Q     + P    +  + ++      +R+ L
Sbjct: 254 ALLTRQFRQFFQVKTRLAKGYTQKEMASQLK---LHPYVVKLAMQQVKALTTKQLRQAL 309


>gi|126666973|ref|ZP_01737949.1| DNA polymerase III subunit delta [Marinobacter sp. ELB17]
 gi|126628689|gb|EAZ99310.1| DNA polymerase III subunit delta [Marinobacter sp. ELB17]
          Length = 334

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 123/311 (39%), Gaps = 15/311 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNISTFWNEINSTSLF 80
            V++  G +  L+ E  +Q +K       D   L  L    +   + +   +E ++ SLF
Sbjct: 18  PVYLVSGDEPLLVQECCDQIRKVA----RDQGFLDRLTFHADNHFDWNIVADEFSAMSLF 73

Query: 81  SKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSV 137
           ++K+ I + +L T K       +E I+ +   + ++++ S  +    T RK   +     
Sbjct: 74  AEKRRIEV-HLPTGKLGDGRAVMERILAQPADDIVLLLISARLDAAETRRKWYKDLQGKG 132

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L +  +P +       +++       +++++A  IL   L G+ +A+  EL++L  +   
Sbjct: 133 LHVPVWPVDADKFPGWLQQRAASRGLTLTRDALAILAERLEGNLLAASQELERLVLFSKG 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I E  V+  + D+      E+++  + G   +A  +             LL    + 
Sbjct: 193 -ATIDEGLVEQAVQDSSRFNGFELVSELLTGNASHACKMIGILQQEGENPLGLLTVLARD 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHR 316
             LL ++      S  +        ++ +  P +   L+++ +  N++ +   +H     
Sbjct: 252 IHLLLELK----ASGQNTAPAAFFKKRGVFQPQRAKALEQAAKRLNRSQLNNAIHLCSEV 307

Query: 317 IHLARKKKYLE 327
              A+    L 
Sbjct: 308 DRAAKGFDPLG 318


>gi|311695366|gb|ADP98239.1| DNA polymerase III, delta subunit [marine bacterium HP15]
          Length = 335

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 123/312 (39%), Gaps = 16/312 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNA-LEIQKNISTFWNEINSTSL 79
            V++  G +  L+ E  +Q +K      +HD      L    + Q + +    E ++ SL
Sbjct: 18  PVYLISGDEPLLVQECCDQVRKAAKDAGFHD-----RLTFHADHQLDWNAVGEEFSAMSL 72

Query: 80  FSKKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTS 136
           F++K+ I I +L T K       LE ++     + I+++ S  +    T RK   E    
Sbjct: 73  FAEKRRIEI-HLPTGKLGDGRAVLERVLADPPDDIILVLISARLDAAETRRKWYKELQGK 131

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + +  +P +       +++       S+++ A  I+   L G+ +A+  EL +LS    
Sbjct: 132 GVHVPVWPVDADKFQGWLQQRASNRGLSLTRGALAIMSERLEGNLLAASQELDRLSLLAN 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  I E+ V+  + D+      E++   I G+  +A  +             LL    +
Sbjct: 192 GN-TIDEETVEQAVQDSSRFNGFELVTELISGRAPHAGKMITVLQQEGENPLGLLSVLSR 250

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDH 315
              LL ++      S      +    ++ +  P +   ++++ R  N+N + + +     
Sbjct: 251 DLNLLLELKSAAGQSENPAAFL---KKRGVFQPQRARAMEQAARRLNRNQLNKAITLCSQ 307

Query: 316 RIHLARKKKYLE 327
               A+    L 
Sbjct: 308 IDRAAKGFDSLS 319


>gi|292490671|ref|YP_003526110.1| DNA polymerase III subunit delta [Nitrosococcus halophilus Nc4]
 gi|291579266|gb|ADE13723.1| DNA polymerase III, delta subunit [Nitrosococcus halophilus Nc4]
          Length = 351

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 107/297 (36%), Gaps = 10/297 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  LI E  +  +        +   ++ ++      +         S SLF+
Sbjct: 18  PIYLLFGDEPLLIEEAADLIRAQARSQGFNEREVMHVDRGF---DWGQLQLATESLSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            ++++   +      +     L+        + +++I SN++++ +             +
Sbjct: 75  SRRLLELRLSGGGVGEPGAKALQAYGKDPSRDTLLLIISNKLERRHQGSSWFSLLEQAGV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +  +   L   IE  +       + EA   L   L G+ +A   E+ KL+  C  +
Sbjct: 135 VVQVFKVDPSLLPRWIERRMQSKNLHPTPEAVTALAERLEGNLLACAQEIDKLALLC-PE 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I    V++++ D+       ++ + + G +     +     A  +    +L     + 
Sbjct: 194 GTIDIHGVEEVVADSARYDAFRLVESALAGDVVRISRIWRGLRAEGVDPSVVLGALAWEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + L ++           ++ +++    +   ++ + +++L        R  L ++  
Sbjct: 254 RRLVRV-ATACAQGTPVDQALREER--VWERRKALSKQALSRHAAYRWRIFLQRLSD 307


>gi|328676247|gb|AEB27117.1| DNA polymerase III delta subunit [Francisella cf. novicida Fx1]
          Length = 325

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQF  KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  ++ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|118496787|ref|YP_897837.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324532|ref|ZP_03058304.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422693|gb|ABK89083.1| DNA polymerase III, delta subunit [Francisella novicida U112]
 gi|194321367|gb|EDX18853.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 325

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQF  KN  I+YHD             +NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SDQNIDI 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  ++ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|307544815|ref|YP_003897294.1| DNA polymerase III subunit delta [Halomonas elongata DSM 2581]
 gi|307216839|emb|CBV42109.1| DNA polymerase III subunit delta [Halomonas elongata DSM 2581]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 112/303 (36%), Gaps = 10/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V I  G +     E  +  ++       +   ++ + A               S SLF+
Sbjct: 18  PVVIVAGDEPLQHMEACDAVRRTAREAGIEEREVLHVEANF---PWGRLLESAASLSLFA 74

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNIC-NHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +K+I +  N    ++    L+E        ++I++I S ++          +      L
Sbjct: 75  SRKLIELRLNGKPGQEGAKALKEYAEGMSGSDNILLIASAKLDYREQKSAWFKALDKAGL 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +P +   L   + +       ++  +A ++L     G+ +A+  ELQKL+      
Sbjct: 135 FVPVWPVDASRLHFWLRDRASRHGLTLDLDAARLLGERTEGNLLAADQELQKLALLLPPG 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I+ Q V   + D+    +  +++A ++G+      +        +    +L    ++ 
Sbjct: 195 ARISPQQVAGGVEDSARYDVFTLLDACLKGERARVSRILGGLRGEGVEPPIVLWALTREL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDH 315
           +LL  IH   +    S E   +  +  I   +R   Q++++      + + L    ++D 
Sbjct: 255 RLLLSIHQHLD-QGQSLEHACKAQKPPIFDKRRPAYQQAIQRLPMKRLHKLLLFAQRLDL 313

Query: 316 RIH 318
            I 
Sbjct: 314 TIK 316


>gi|116618681|ref|YP_819052.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097528|gb|ABJ62679.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 333

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 135/329 (41%), Gaps = 24/329 (7%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +Q+  +N  +++F +I  G ++ L+    + F K +        +   ++  E  + +  
Sbjct: 6   LQQQIENNAMANF-YIVTGEEETLLSHAKSMF-KGLVDQEDRDMNYSQIDLTE--QTLDV 61

Query: 70  FWNEINSTSLFSKKKIILIEN----LSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIK 122
             N+  S   F  +++++++N     +T K      + L ++  + +  +I++  +N++K
Sbjct: 62  VINDAMSVPFFGDRRVVVVKNPQFLTATGKVGDRDQELLLKLFDQPVLQNIVVFFANDLK 121

Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
             K   L K+  K    +++     N+      I + L     +I  EA   L+      
Sbjct: 122 LDKRKKLAKVLLKTAENISLP--ALNERQAQQAIVQQLDQRSYAIEPEALHELMQRTNAQ 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
               +NEL KL +Y  +   IT   V  ++  T      ++++A I+ +   A+ L    
Sbjct: 180 YTDMKNELPKLITYAEQTKKITLDVVSALVPKTLTANAFDLVDAVIKRRPQEALTLYHDL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L +      L      +F+LL    +     + + + I  + +  + P +  + +E+LR 
Sbjct: 240 LQNGEAPLRLNAVLTNQFRLL----LQVAGLSGNDQDIGAQLK--VHPYRVKLAKEALRS 293

Query: 301 WNKNLVRE---TLHKIDHRIHLARKKKYL 326
           +    VR     +  I+ ++    +   L
Sbjct: 294 YPPQFVRTGYLGMIDIETQLKSTSQDPEL 322


>gi|118580153|ref|YP_901403.1| DNA polymerase III subunit delta [Pelobacter propionicus DSM 2379]
 gi|118502863|gb|ABK99345.1| DNA polymerase III, delta subunit [Pelobacter propionicus DSM 2379]
          Length = 338

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 102/299 (34%), Gaps = 10/299 (3%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YG +  LI        +         F+  V    E +       +   +  +F++++ 
Sbjct: 21  LYGEESFLIERATRLLLEKAVDPSLKDFNFNVFFGNESRG--IDIVDAALTLPMFAERRA 78

Query: 86  ILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +L++     K   L+ L E +        ++     +K +   +K  ++     A+  Y 
Sbjct: 79  VLVKRAELLKVDALEVLLEYLRNPATGTCLVFNG--LKIDQR-KKFFQELKKQGALVEYK 135

Query: 145 D-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
              +  L   I        K +   A  +L   +G +     ++++KL  Y  +   IT 
Sbjct: 136 RLYENKLSAFILGEAKTQGKPMEPAAADLLSFLIGNNLQELSSQIEKLVLYAGDRPRITL 195

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+++   +    + E+        + +A+   D    +      +L    + F+ L +
Sbjct: 196 DDVREVASSSKAFTVFELARYLGIRDLSSALKSLDTLFRNGEEVPMMLGALARHFRQLWR 255

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           +  + +   +    I ++   N   +   +  +  R + +  +     ++      ++ 
Sbjct: 256 VRELLD-QGVPQSDIGRQVGINPYFLGEYL--QQARNFPRPELSSIFEELYRCDLASKS 311


>gi|187250621|ref|YP_001875103.1| DNA polymerase III subunit delta [Elusimicrobium minutum Pei191]
 gi|186970781|gb|ACC97766.1| DNA polymerase III, delta subunit [Elusimicrobium minutum Pei191]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 125/319 (39%), Gaps = 14/319 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ F G D   ++      ++ +     D F++   +A   + +        N+  +FS
Sbjct: 20  PVYFFTGED---VYRKSAMLERIVKKINADDFNVTKEDAS--KTDFGEILALANTAPVFS 74

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137
            ++II + N+   +K     L   +   + + ++++    + ++K + +++K AE   +V
Sbjct: 75  DRRIIFLNNIDKLKKDAQSALLNYLELPMHSTVLVLFHNDAKKLKTDASVKKAAEAVGTV 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +  +        L   I+        S+  EA ++L+   G D  A  +E++K+S Y   
Sbjct: 135 IDFA--ELKGPALNAWIKNKFKEKGLSVEPEACELLIDMTGSDLAALESEIEKISLYKNM 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
               T   + + +  +       + NA +      A+ L    L       ++L+     
Sbjct: 193 QGTATSADILECVGYSREENPFALSNAVLACDRKTALTLVGKLLGEGESPVSILNKISAS 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              + +I  +      S ++I+      ++  +  ++  +    ++  + +TL+KI    
Sbjct: 253 VLKMTRIKRLVNA-GYSNQEIVSSAG--LMFWEGRLVSSARMFPSEQTMLKTLNKIIDAD 309

Query: 318 HLARKKKYLEKNIIFQTIL 336
              +     +  ++ + IL
Sbjct: 310 IALKTSSGHDPKVLLKGIL 328


>gi|208780598|ref|ZP_03247937.1| DNA polymerase III, delta subunit [Francisella novicida FTG]
 gi|208743573|gb|EDZ89878.1| DNA polymerase III, delta subunit [Francisella novicida FTG]
          Length = 325

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ N F  KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNYEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  ++ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|169832208|ref|YP_001718190.1| DNA polymerase III subunit delta [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639052|gb|ACA60558.1| DNA polymerase III, delta subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 335

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 11/281 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG +  L  + IN+ K  +     + F+L  ++  E                + +
Sbjct: 18  PVYLFYGDEVFLHRQAINRLKAALLTGGAESFNLSEIDGEETA--PEEVVRAARLVPVLA 75

Query: 82  KKKIILIENLSTEKK----VLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
             +++++ N+    +      + LE  +        +++ K+  + +   L ++      
Sbjct: 76  VCRLVVVRNIPYFDQKPGLGSELLEAYLDAPSPSTCLVLQKAGPVDRRKKLYQLV--TRR 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
             AI   P +   +   +           ++EA    L+++ G       EL K+ +Y  
Sbjct: 134 GRAIDFTPLSAGDVARWVSREAKKSGAVFTREAMDRFLSSVPGGLQGVAVELGKVLTYVG 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E   +T + V  ++       I ++++A  +G+   AI       A+      +L    +
Sbjct: 194 EKERVTVEDVAAVVAPRREETIFQVVDAVGEGRFEAAIDGIRVLTAAGESPLGILAMLAR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           +F+LL     +        E   +   K    + +  L ++
Sbjct: 254 QFRLLLCAPDLAASGLAVPEIAARLQTKP--FVIKKALAQA 292


>gi|254372151|ref|ZP_04987643.1| DNA polymerase III [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569881|gb|EDN35535.1| DNA polymerase III [Francisella novicida GA99-3549]
          Length = 325

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ N F  KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNAFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTTA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  ++ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQIIKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|291519627|emb|CBK74848.1| DNA polymerase III, delta subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 282

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 2/211 (0%)

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           N++   ++  +   F++ ++ILIEN    KK+ + L E +       I I       K  
Sbjct: 12  NVNQVIDQAETMPFFAEHRVILIENSGFGKKMPEELGEYLSTIPDFTIFIFVEPSADKRG 71

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            L K A+     + I     N+  L   +   L    K + K+A               +
Sbjct: 72  KLYKAAKAAGRDIEI--NMPNETVLTQWVGAMLKDSGKQMKKDAWIQFRDMTDSSMDNMK 129

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            EL KL +Y  +   IT + V  I        I ++IN+     +   + L    L++K 
Sbjct: 130 RELDKLVTYVGDRSQITIEDVNAICIPQIETKIFDMINSIALKDLPKTMDLYQDMLSAKE 189

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           P   +L+  +++F+ L  I  +KE    S  
Sbjct: 190 PPMRILYMIVRQFRQLAVIRELKEQGESSAS 220


>gi|254373632|ref|ZP_04989116.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548]
 gi|151571354|gb|EDN37008.1| hypothetical protein FTDG_01640 [Francisella novicida GA99-3548]
          Length = 325

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 118/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQF  KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     I ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDIFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|326389157|ref|ZP_08210737.1| DNA polymerase III, delta subunit [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206388|gb|EGD57225.1| DNA polymerase III, delta subunit [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 340

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           +HK              VF F G+D+    +   +  + +      P   V +   E+++
Sbjct: 4   THKTFAGMMDRALRQARVFYFCGADEAGASDAAARVIERLG-----PAEKVEMTGAELRR 58

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +     +E  STSLF   +II+I     E    + +  +I   +    ++  +      +
Sbjct: 59  DPVRLADEARSTSLFGDHRIIIITMSGDEAY--EAISTLIADPVPGWPVLAIAGGATDKS 116

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            + K+       L    +P +   + +++          ++    + +    G D   +R
Sbjct: 117 RIAKLLADRDDALVTVFHPPDLRAVAEMVRTLGDTAGLRLNSGLAEQIALATGLDTRMAR 176

Query: 186 NELQKLSSYC----LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +E++KL  Y           T   +  I   T    I  +INA + G+            
Sbjct: 177 SEIEKLVLYLDAAPESPRAPTPADLAAIGAATEDDSIAPLINAALGGQTKQVGHELARVT 236

Query: 242 ASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           A  +   ALL  F ++   L +    +   ++IS     +   + +    +  L + L  
Sbjct: 237 AQDVNGVALLLAFERRVVTLFQLAGRLGTRTDISAFLEGEIQARRVFFRDKADLAQQLGR 296

Query: 301 WNKNLVRETLHKI 313
           W    +     ++
Sbjct: 297 WRGARLERLAQRL 309


>gi|88705743|ref|ZP_01103453.1| DNA polymerase III, delta [Congregibacter litoralis KT71]
 gi|88700256|gb|EAQ97365.1| DNA polymerase III, delta [Congregibacter litoralis KT71]
          Length = 344

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 121/296 (40%), Gaps = 9/296 (3%)

Query: 18  FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              H V++  G +  L+ E  +Q +        +   +  +++ +   N      + +S 
Sbjct: 14  RTLHRVYLISGDETLLVQECADQVRAAARRGGCNERHV--MDSSDRSFNWQDLTQDASSM 71

Query: 78  SLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLF+++++I   I N     +    L+E + +      ++I + +I K +T  K  +   
Sbjct: 72  SLFAEQRLIELRIPNGKPGAEGSKALQEYLAQAPETDTLLIVAGKIDKASTNSKWYKAID 131

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                +  +P N   L   +E+       SI +E   +L   + G+ +A+  EL+KL   
Sbjct: 132 QAGATVQLWPVNADELPRWLEQRARSISLSIDREGLALLAERVEGNLLAAVQELEKLRLL 191

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  ++ + V   + ++       +I+  + G+  +++ +     +  +   ALL G 
Sbjct: 192 A-GDSTVSAKQVAYAVANSARFDSFALIDVALSGRAGDSLRMLHGLRSEGIQPPALLWGL 250

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ +LL  +    E    +  + +      +   ++ ++Q ++R  +       L
Sbjct: 251 VRELRLLRGLLQAVEA-GQAPMQALNGAR--VWKSRQGVIQAAMRRHSVASCEVLL 303


>gi|319651624|ref|ZP_08005751.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2]
 gi|317396691|gb|EFV77402.1| DNA polymerase III subunit delta [Bacillus sp. 2_A_57_CT2]
          Length = 345

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 122/336 (36%), Gaps = 18/336 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  LI E       N+       F+L   +  E   + +    +  +     
Sbjct: 16  PIYLLYGTEPYLINETKQLLINNVLSEDEADFNLSSYDLEETPIDTA--LEDAETFPFMG 73

Query: 82  KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           ++++I + N          + ++  L  LE  + +     +++  S   K ++  RK   
Sbjct: 74  ERRLIFLHNPVFLTSEKSKAKQEHNLSKLEAYMKEPAPYSVVVFSSAAEKLDD--RKKIT 131

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +     N+  L   I E   +    I + A +++L   G +     NE+ K
Sbjct: 132 KQLKKTAAILEAKKLNEGELKAWIRERAALNGVQIDESAVELILTLAGTNLFILTNEIDK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+ Y  +   I EQ  + ++  +    I  +++  +  KI  A+ +    L        +
Sbjct: 192 LALYANDTKRIDEQMAEKMVSRSLEQNIFSLVDKVVHRKIEEALRIYYDLLKQNEEPIKI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L     +F+L+ ++           ++I    +  I P +  +     +++    +   +
Sbjct: 252 LSVITGQFRLIYQVK-ELARRGYGQQQIAGYLK--IHPFRVKLAAGQAQMFADEELAAII 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
             +    +  +     +  +I   +  +   A + N
Sbjct: 309 SLLADADYQMKTGGMNKTMLIEMFLFRLQSQALRKN 344


>gi|90416855|ref|ZP_01224784.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2207]
 gi|90331202|gb|EAS46446.1| DNA polymerase III subunit delta [marine gamma proteobacterium
           HTCC2207]
          Length = 348

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 119/313 (38%), Gaps = 13/313 (4%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I + +   +  K L     ++I  G D  L  E  +  +          FS   +   E
Sbjct: 2   KIRAEQLQDQVKKQLL---PIYIISGGDPLLTQEAADSIRTGARAQG---FSERDIFHAE 55

Query: 63  IQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              + +   NE N+ SLFS KKI  I I N     K    L E+      ++++++   +
Sbjct: 56  GNFDWNQILNESNALSLFSDKKILEIRIPNGKPGDKGAAALSELCANPNPDNLVLVILPK 115

Query: 121 IKKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           ++++    K  +   +    I  +P +   +   I++ L     S ++EA QIL   + G
Sbjct: 116 LERSAQNSKWMKTLEAAGGHIQVWPVDAKQMPRWIQQRLRSANISANQEAVQILADRVEG 175

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E++KL      D  +    +  ++ D+    + E ++  + G   +A      
Sbjct: 176 NLLAAVQEIEKLKLLA-TDGTVDGSTMSSVVADSARYNLFEFVDKILIGDGQSAARSLRG 234

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
                  +  LL    ++ ++L K   +      S   +       +   +  + + +L+
Sbjct: 235 LQNEGTDAIPLLWAITRELRILVKASDLVAGGEHSDWALKNS---GVWEKRLPLFKSALQ 291

Query: 300 IWNKNLVRETLHK 312
                 +R  L +
Sbjct: 292 RLRPAHLRMLLRQ 304


>gi|239995377|ref|ZP_04715901.1| putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Alteromonas macleodii ATCC 27126]
          Length = 342

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 136/325 (41%), Gaps = 22/325 (6%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I  ++F Q  TK L      ++ +G +    F++I Q +        +  +++V    E
Sbjct: 2   QIYPNQFSQDITKAL---RPCYLVFGDEPQQKFDVIEQIRAKAKANGFEERTVLV---AE 55

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSN 119
              N +       S SLFS ++ I +E L T K   +    L+E+      + ++++   
Sbjct: 56  TGFNWNQLIEATQSMSLFSSQQFIELE-LPTGKPGTEGSKMLQEVAASLNPDILLLVHGP 114

Query: 120 EIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           +I K+    K  +    +  ++ CYP     L   + + L   Q S+S    +++     
Sbjct: 115 KIGKDVQRGKWFKVLDDLGASVLCYPLEGKQLNAWLNQQLNAHQLSVSASGAKMIADFCE 174

Query: 179 GDRIASRNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G+ +A++ E+ KL+  Y  +   I+++ ++  + D     + ++++  + G     I + 
Sbjct: 175 GNMLAAKQEIDKLALLYPHQS--ISDEQIEKAMVDQSRFNVFQLVDVMLSGDSTRCIKML 232

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
               +  +  + ++   +++++ L K+ + ++         IQ  +  I   ++   Q +
Sbjct: 233 YRLESEGLEPNIIIWALIREWEQLWKLKLAQQSGAP-----IQWQKFGIWRNRQGFYQSA 287

Query: 298 LRIWN---KNLVRETLHKIDHRIHL 319
           L   +      +++ L + DH    
Sbjct: 288 LNRLSVAQLEDIQKALTQSDHAFKQ 312


>gi|74318461|ref|YP_316201.1| DNA polymerase III subunit delta [Thiobacillus denitrificans ATCC
           25259]
 gi|74057956|gb|AAZ98396.1| DNA polymerase III, delta subunit [Thiobacillus denitrificans ATCC
           25259]
          Length = 344

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 99/281 (35%), Gaps = 8/281 (2%)

Query: 74  INSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            ++ SLF+++++  I I +          LE    K   + + ++    + +     +  
Sbjct: 67  ADNLSLFAERRLTEIRIPSGKPGVDGAKALEAYAAKLPADTLTLVSLPGLDRKTQQSRWF 126

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                S + +   P  +  L   I+  L        + A + L   + G+ +A++ E+ K
Sbjct: 127 TALAKSAVVVEARPVERAQLPAWIDRRLARQGLHAERAALEFLADQVEGNLLAAQQEIDK 186

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+   L    +T   V+  + D   L  + + +A   G       +A     S     A+
Sbjct: 187 LAL-LLPPGAVTLADVEHAVVDVSRLEADALQDALYAGDAARFAQVAKDLQDSGEAVPAI 245

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L       QLL ++ +  + +  S   +++         +   ++ +L+  +   +   L
Sbjct: 246 LWQVASAVQLLLRLKL-AQSNGESLPALMRTLW-GRDKQRAPQIERALKRLSMTQIEAAL 303

Query: 311 HKIDHRIHLARKKKYLEKN--IIFQTILYIAQTACKNNNFY 349
             +      A+    +      + +  + +A    + N   
Sbjct: 304 GALAGVDRQAKGLDRIGDPWDSLLRAAMTLAGGERRENRTR 344


>gi|182413223|ref|YP_001818289.1| DNA polymerase III, delta subunit [Opitutus terrae PB90-1]
 gi|177840437|gb|ACB74689.1| DNA polymerase III, delta subunit [Opitutus terrae PB90-1]
          Length = 389

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 18/277 (6%)

Query: 13  STKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNI 67
             + +          G D  L+  L  +    ++    D FS  VL+       E+   I
Sbjct: 21  PNRAMPAGRNFTFICGPDDFLVGRLGAEKFAALAAEVPDEFSREVLSGFANNVGEVASAI 80

Query: 68  STFWNEINSTSLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIII 115
           + F + + + S+F  ++++ +++             +  K+L+ L+EI+ K +     ++
Sbjct: 81  NRFRDSVQTISMFGGRRVVWLKDVNFLADSVTGRAESTLKLLEDLQEILTKIDPAETAVL 140

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I +  + +     K  EK      ++    +   L  ++         +I+ +A ++LL 
Sbjct: 141 ITAAPVDRRRAFPKWCEKNADFTLVAADAGDGAALEGVVLAEAKAVGATITPDAVRLLLV 200

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
            +G +      E+ KL++Y  E   I E HV ++  +       E   A   G +   + 
Sbjct: 201 RVGANTRLLVEEVHKLANYAGEGQPIEEAHVGELTPNVAEGDFFEAAEAFFSGDLKWTLA 260

Query: 236 LADF-FLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
             +  F A    +  +L     + ++L ++  + +  
Sbjct: 261 ALERQFFAEPNAARPILAALQNRNRILLQVRALIDAG 297


>gi|332969971|gb|EGK08971.1| DNA-directed DNA polymerase III delta subunit [Kingella kingae ATCC
           23330]
          Length = 336

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 103/265 (38%), Gaps = 6/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +  +++            E NS SLF+
Sbjct: 19  PLYLIHGEEELLRLEAVDAIRAAAKQQQYLNREVYTVDSANFDWQP--LLAEANSVSLFA 76

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +K+  I I N    K+  D L+++  +   + ++++   ++ K  T  K       + +
Sbjct: 77  SQKLLEIHIPNGKVGKQGGDALQQLAQQLPADTVVLLVLPKLDKMQTQSKWFTALAKNGM 136

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +   P     L   I E L      I  +A Q+    + G+ +A++ E++KL     + 
Sbjct: 137 VLEAKPIVGNSLPAWIRERLAAQGLDIDADALQLFTERVEGNLLAAKQEIEKLGLLYAQG 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +++   V+  I +     + ++ +A + G     + L +   A        L    +  
Sbjct: 197 HVLSLDDVQAAIANVARFDVFDLSSAWLGGDTKRVVRLLEGLEAEGDEPVLALWSVAEDI 256

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + + ++         + +++  +  
Sbjct: 257 RTVIRLSAAL-KQGKTAQQVRNELR 280


>gi|323702390|ref|ZP_08114055.1| DNA polymerase III, delta subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323532696|gb|EGB22570.1| DNA polymerase III, delta subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 348

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 125/341 (36%), Gaps = 33/341 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG ++ L  + + +FK+++     D F+L VL+  E +  ++T  +   +    +
Sbjct: 18  PVYLFYGEEEYLKEKAVAKFKEHLLPQAAD-FNLDVLDGEETE--LTTVVSLAENLPFMA 74

Query: 82  KKKIILIENLSTEKKVLD-----------------CLEEIIIKN-ICNHIIIIKSNEIKK 123
           ++++++++N    K                      L   + +      +I +  + + +
Sbjct: 75  ERRLVIVKNAPWFKGKAKGSADQSSGEDKSAGKEGTLLNYLNQPAPTTCLIFVTGDSVDR 134

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRI 182
              L K  E     +           +   +   +    K I   A + L+   G    +
Sbjct: 135 RKKLFKAVESAGKAVDFKALK--ANEMAAWVTNQVKARGKKIDAMAVRALVEANGKLGLL 192

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              NE++KL +Y  E   I+   V+ +        I  +++  + G    AI      LA
Sbjct: 193 NLANEVEKLITYVGEAKDISLTDVQQVGVTNLEQNIFTVVDEAVSGNTAQAITGIKELLA 252

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLR 299
            K     +L    ++F    ++ I  E    +     ++  K   +   +++ +     R
Sbjct: 253 LKEQPVKILAMLARQF----RLAIQVEALVRTGCPEREVAGKLGLHDFVVRKAL--AQAR 306

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             +   +   L ++       +K +      I  T++ ++Q
Sbjct: 307 KSSTAKLEWALERLAAMDAEIKKGQQDFLPAIANTLIRLSQ 347


>gi|89257146|ref|YP_514508.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315485|ref|YP_764208.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503371|ref|YP_001429436.1| DNA polymerase III, subunit delta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011053|ref|ZP_02275984.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368371|ref|ZP_04984389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|290954108|ref|ZP_06558729.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312493|ref|ZP_06803261.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144977|emb|CAJ80337.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130384|gb|ABI83571.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254179|gb|EBA53273.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|156253974|gb|ABU62480.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 325

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|42522977|ref|NP_968357.1| DNA polymerase III, delta subunit [Bdellovibrio bacteriovorus
           HD100]
 gi|39574173|emb|CAE79350.1| DNA polymerase III, delta subunit [Bdellovibrio bacteriovorus
           HD100]
          Length = 336

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 122/327 (37%), Gaps = 13/327 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I++ KF +   K    +  ++  +G +  L+ + + +FK  +       F+  +  A
Sbjct: 1   MALIDAQKFYRDLEKGQ--TAPMYFLFGEEPYLLNQSVERFKYAVLTEGAVDFNYSLFYA 58

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSN 119
            +   ++ +  + + +  + +++++++++       K    LE ++   + + + +I ++
Sbjct: 59  SD--ADVVSVRDAVETLPMMAQRRLVILKEAQELTDKEWAELEPLLESPVDSTVFVILAS 116

Query: 120 EIKKNNT-LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            + K    +R + +K   V     Y +     ++ I +SL     +IS +A  +L   +G
Sbjct: 117 RVDKRKKQIRLLLDKADCVEFKKPYENQIPSWINYIAQSL---GLTISNDAILLLHKLVG 173

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
                   EL+KL  +   +  I    V   +  +    + +   A  +     A+ L  
Sbjct: 174 HHLTEIEGELKKLGEFV-GERRIEVADVAQAVSRSKEENVFDFTKAIGENDRVKALELLV 232

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             L        ++    +  ++L  +    E      +               + L ++ 
Sbjct: 233 HLLDQGQNEIGIVSLVARHVRILLTLKRGMEEGLHGAKLAHFAQVPPYFLE--SYLDQA- 289

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKY 325
           R+W    + +TL  +       +    
Sbjct: 290 RLWTAKKLEQTLVVLSETDKALKSSPL 316


>gi|153875283|ref|ZP_02003154.1| DNA polymerase III, delta [Beggiatoa sp. PS]
 gi|152068253|gb|EDN66846.1| DNA polymerase III, delta [Beggiatoa sp. PS]
          Length = 365

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 105/285 (36%), Gaps = 10/285 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G D     E  +  +   +   H  F+  V+ A+E   + S+     NS SLF+
Sbjct: 46  PIYLLTGDDPLQQMECADTLR---NFARHQGFTERVVLAVETGFDWSSLEQYANSLSLFA 102

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138
            K++  I + N S        L         +++++I ++++  +    K      +  +
Sbjct: 103 NKRLLEIRLGNKSPGNDGTKALIAYSNNPPADNVLLITADKLDASKQKTKWFTTLDNKGI 162

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I  +P     L   I + +       + EA  ++     G  +A   E++KL       
Sbjct: 163 VIQIWPLKISELPGWIAQRMKKYGLQAAPEAINLIAERSEGHLLACAQEIEKLRL-IYGT 221

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I    V + + D+    + + ++  + G I  ++       A  +    +     ++ 
Sbjct: 222 GQINTAQVLEAVADSARFEVFDWVDTVLIGNIQRSVRQLQGLQAEGVEPILVAWALTKEI 281

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
           ++L +I      +    ++  +     I   ++     +++ + K
Sbjct: 282 RILCQITYAL-KAGQRPQQAFKTFR--IWSTRQTAFSNAIKRYPK 323


>gi|56707362|ref|YP_169258.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669832|ref|YP_666389.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456430|ref|ZP_03664903.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370934|ref|ZP_04986939.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874196|ref|ZP_05246906.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603854|emb|CAG44830.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320165|emb|CAL08213.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569177|gb|EDN34831.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840195|gb|EET18631.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158494|gb|ADA77885.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 325

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|254368393|ref|ZP_04984410.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121287|gb|EDO65488.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 325

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|331004485|ref|ZP_08327956.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411052|gb|EGG90473.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 341

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 117/313 (37%), Gaps = 12/313 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G D+ L      + K  I     D  +        I  +I    +  N+   FS+
Sbjct: 35  IYVLSGDDEFLKNSYKKRLKSAIVGD--DQMNFAYFEGKGI--DIDAIIDFSNTLPFFSE 90

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + ILIE+    K   +   + I     +  II    ++ K + L K  +    +  ++ 
Sbjct: 91  YRCILIEDSQWFKAGNEKFFDHISDKPDSTKIIFVEKDLDKRSKLYKKVKDIGYIAELNH 150

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
             D +  L +     +    K I+       +A +G D    ++EL KL S+ L+  +I 
Sbjct: 151 PTDEE--LKNWAGNIINRAGKKITVSNMDFFIARVGNDMERIKSELDKLLSFTLDKDIIE 208

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
           E+ ++ I   +    I E++      KI  A+ + +  +A K P   ++    ++F  L 
Sbjct: 209 EEDIRAITSISLTNRIFELVKMITNNKIKEALDIYEDLVALKEPPLKIIILITRQFNQLL 268

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHL 319
           +I      +    + +I   +  + P     L    R ++  L+    +    ++  I  
Sbjct: 269 QIK-ELTAAGFGEKDVISNMK--LNPYVAKNLIRQSRGFDIALLLSYVKNAIDLEEAIKQ 325

Query: 320 ARKKKYLEKNIIF 332
                 L   ++ 
Sbjct: 326 GNINDKLALELLM 338


>gi|325107356|ref|YP_004268424.1| DNA polymerase III subunit delta [Planctomyces brasiliensis DSM
           5305]
 gi|324967624|gb|ADY58402.1| DNA polymerase III, delta subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 335

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 109/326 (33%), Gaps = 11/326 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSL-VVLNALEIQKNISTFWNEINSTSLF 80
            V +  G ++ L   + ++    +      P  +   L     Q       +E+ + S+F
Sbjct: 17  PVVVLSGGERFLKQRVQSRLLSALFPDEEKPAEMATQLEGK--QAEWRAVLDELKTISMF 74

Query: 81  SKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             ++ + I             LE  +++     ++++      KN  L K      + LA
Sbjct: 75  GGQRCVCIGTADDFVSSHRAALENYVLQPSKKSLLLLDVKSWPKNTKLAKKV--AKTGLA 132

Query: 140 ISCYPDNKIHLMD-LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I C       L   ++  +       I +   + L+   G        EL KL+SY  E 
Sbjct: 133 IECSELKGAQLAGWVVGHAKQQYDVKIPRGVAEGLIDLAGTSLGLLDQELDKLASYVGEK 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT + V+ ++    +     +INA   G + +A++  +  + S      LL G    +
Sbjct: 193 KAITIEDVQSVVGGWRLETTWAMINAVRDGFMDDALIEMNKLITSGEAPQKLLGGINFVY 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L         +  +    +   E  + P      +  LR   +         +     
Sbjct: 253 RKLT---AAVRTAGPNKPLNVALKEAGVFPRDVPAAESYLRKLGRPKAERIPQMLMQADL 309

Query: 319 LARKKKYLEKNIIFQTIL-YIAQTAC 343
             +    L   ++ + +L  +A  A 
Sbjct: 310 GMKGDSSLPPRVLLERLLVQLAPGAR 335


>gi|220935445|ref|YP_002514344.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996755|gb|ACL73357.1| DNA-directed DNA polymerase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 344

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F G +   + E  +  +       +    +   +      + S      +S SLF+
Sbjct: 18  PVYLFAGDEPLQLMEAADAVRAAARTRGYTEREVFTADRSF---DWSALTAASDSLSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
           +++I+ +         +    LE   ++   + ++++ + +++K+    K  +      +
Sbjct: 75  ERRILELRLPTGKPGTQGAKALEAYCLRLPEDTLLLVHAGKLEKSAANSKWVKSLEQAGV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I  +P +       I   L        + A ++L   + G+ +A+  E++KL+     +
Sbjct: 135 MIQVWPLSLAETAGWIARRLRSRGLVPDEPAVRLLAERVEGNLLAAAQEVEKLAL-LRGE 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    V + + D     I ++ +A + G    A+ + +      + +  +L    ++ 
Sbjct: 194 GSLDADGVLEAVSDAARYTIYDLADAALAGDSARAVHVLNGLRGEGVDAVLILWALSREV 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           + L  I    E    +      +  K++   +  +++++L        R  L
Sbjct: 254 RSLTDIAEQMEAGTPAA-----QAMKSVWAKRAPLVKKALARHRAPAWRALL 300


>gi|149377500|ref|ZP_01895241.1| DNA polymerase III, delta subunit [Marinobacter algicola DG893]
 gi|149358192|gb|EDM46673.1| DNA polymerase III, delta subunit [Marinobacter algicola DG893]
          Length = 335

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 116/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  L+ E  +Q +K      +        +    Q + +    E  + SLF+
Sbjct: 18  PVYLVSGDEPLLVQECCDQIRKIAREAGYQDRVTFHADQ---QLDWNRVGEEFGALSLFA 74

Query: 82  KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVL 138
           +K+ I I +L T K       LE ++     + ++++ S  +    T RK   E     +
Sbjct: 75  EKRRIEI-HLPTGKLGDGRAVLESVLQNPPDDIVLLLISARLDAAETRRKWYKELQDKGV 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +P +       +++       S+++ A  IL   L G+ +A+  EL +L+      
Sbjct: 134 HVPVWPIDTDKFPGWLQQRARNHGLSLTRGALDILAERLEGNLLAASQELDRLAL-LGTG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I E  V+  + D+      E++   + G+  +A  +             LL    +  
Sbjct: 193 ATIDEDTVEQAVQDSSRFNGFELVTELLAGRAAHARKIVGVLQQEGENPLGLLAVLTRDL 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            L  +++I       +   +    ++ +  P +   ++++ R  N++ +   L       
Sbjct: 253 NLTMELNIAAAKRENTAGFL---KKRGVFQPQRARAVEQAARRLNRHQLNTALELCSTTD 309

Query: 318 HLAR 321
             A+
Sbjct: 310 RAAK 313


>gi|77166121|ref|YP_344646.1| DNA polymerase III, delta subunit [Nitrosococcus oceani ATCC 19707]
 gi|254435580|ref|ZP_05049087.1| DNA polymerase III, delta subunit [Nitrosococcus oceani AFC27]
 gi|76884435|gb|ABA59116.1| DNA polymerase III, delta subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088691|gb|EDZ65963.1| DNA polymerase III, delta subunit [Nitrosococcus oceani AFC27]
          Length = 344

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 120/323 (37%), Gaps = 13/323 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  LI E  +  +  +         ++ +       + +         SLF+
Sbjct: 19  PVYLLFGDEPLLIEEGADLIRSRVQSQGFYEREVMHIERGF---DWAQLQWATRGLSLFA 75

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
             ++I +   +    +     L         + +++I S ++++ +   +         +
Sbjct: 76  AHRLIELRLPTNAVSEAGAKVLRAYGENPSPDTLLLIISGKLERRHQGTRWFSALEQAGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +  +   L   IE  +     S ++EA  +L+  L G+ +A   E+ +L+     +
Sbjct: 136 VVQVFKVDISSLSRWIERRMHSRNLSPTQEAVTVLVERLEGNLLACAQEIDRLAL-LFPE 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I    V++++ D     +  ++ + + G +     +     A  +    ++     + 
Sbjct: 195 ETIDVSRVEEVVADNARYDVFRLMESALAGDVVQIARIWRGLQAEGVEPVIVVGALAWEL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L ++        +  ++ +++    +   ++ + +++L   + +     L ++     
Sbjct: 255 RRLARM-ARICAQGMPVDQALREQR--VWERRKALSKQALSRHSAHRWLLFLRQLGEIDR 311

Query: 319 LAR--KKKYLEKNIIFQTILYIA 339
           + +   +    + I+ Q  L IA
Sbjct: 312 MVKGAARGRPWEAIL-QLCLAIA 333


>gi|328675340|gb|AEB28015.1| DNA polymerase III delta subunit [Francisella cf. novicida 3523]
          Length = 325

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 26/261 (9%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQF  KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKAKNYEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQVLVDKLINDDDNVYLLVFSG-MKKQNTTA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I++++   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPSLDNSINIINYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +  ++ LS       +  E  ++  + +     + ++  A +      A+ + +  L   
Sbjct: 177 KQIIKLLS--RQGSQIFDENSIRPFLHEHASFDVFDLSEAILSQHKSKALKILNSILNEN 234

Query: 245 MPSHALLHGFLQKFQLLEKIH 265
                +L    ++ ++L ++ 
Sbjct: 235 DKPPLVLWALKRELRILSQLK 255


>gi|224476694|ref|YP_002634300.1| DNA polymerase III subunit delta [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421301|emb|CAL28115.1| putative DNA-binding protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 324

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 121/305 (39%), Gaps = 21/305 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +   YG    LI +   +   +      D F+ V  +  E +  I+    EI +   FS
Sbjct: 4   NIITIYGEVPELIEKKSKEIVDSYLQEPKDDFNFVSFDLAETE--INICIEEILTLPFFS 61

Query: 82  KKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130
            KK+++I+N    + EK         D L E I K     +++ +    ++ +   L K 
Sbjct: 62  DKKVVVIKNAYLFTGEKGPKDLNQNTDQLLEFIQKYDGQTLVVFEVYNPKLDERKKLVKT 121

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K T ++ I    +++  + + ++  L    K I ++A  + +   G +    + EL+K
Sbjct: 122 LKKETKLIKIEQMSEDE--IKNWVKNELNQQYKDIKQDALNLFIELTGINFNLIKQELEK 179

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +  +  +   I +Q V+ I+  +    +  + +   +G+   AI L +  +  K     L
Sbjct: 180 MVLFLGDRPTIVKQDVETIVNRSLEQNVFLLTDYIQKGQKSEAINLVNDLIIMKEEPIKL 239

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L      F  L     I      S ++I +    +        ++ +LR   +  +R+ +
Sbjct: 240 LALITSNF-RLYYQCKILANKGYSQQQIAKTVGAHPF-----RVKLALRTSRQYELRQLM 293

Query: 311 HKIDH 315
             I+ 
Sbjct: 294 SIINA 298


>gi|332993376|gb|AEF03431.1| putative DNA polymerase III subunit delta [Alteromonas sp. SN2]
          Length = 321

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 117/300 (39%), Gaps = 12/300 (4%)

Query: 27  YGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86
           +G +    FE+I Q +        D  +++V +        +       S SLFS ++ I
Sbjct: 2   FGDEPQQKFEVIEQIRTTAKANGFDERTVLVADTGFSW---NQLLEATQSMSLFSNQQFI 58

Query: 87  LIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143
            +E        +    L+E+      + ++++   +I K+    K  +      +++ CY
Sbjct: 59  ELELPTGKPGAEGSKMLQEVAKGLTQDTLLLVHGPKIGKDVQRGKWFKVLDDMGVSVLCY 118

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
           P     L   I   +   Q +I+    +++     G+ +A++ E+ KL+        ++E
Sbjct: 119 PLEGRQLSAWISNQVKQHQLTINAAGMKMIADFCEGNLLAAKQEIDKLAL-LYPQQSVSE 177

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             ++  + D     + ++++  + G     + +     +  +  + ++   ++++++L K
Sbjct: 178 AQIERAMVDQSRYNVFQLVDVMLSGDANRCVKMLYRLESEGLEPNIIIWALIREWEVLWK 237

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           +      S  +  + IQ  +  I   ++   Q +L   +   + +    +       ++ 
Sbjct: 238 LK-----SATANGEAIQWQKFGIWRNRQGFYQSALNRLSIEQLLQIQDALTQADLAFKQN 292


>gi|297529321|ref|YP_003670596.1| DNA polymerase III subunit delta [Geobacillus sp. C56-T3]
 gi|297252573|gb|ADI26019.1| DNA polymerase III, delta subunit [Geobacillus sp. C56-T3]
          Length = 348

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 127/341 (37%), Gaps = 20/341 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  L+ E   +            ++L V +  E    I     E  +   F 
Sbjct: 16  PLYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEET--PIEAALEEAETVPFFG 73

Query: 82  KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           ++++ILI++        EK++   L  LE  +       I++  +   ++ +   + K+A
Sbjct: 74  ERRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLA 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++ + V+  +   +    L   +   +       S EA  +LL   G    A  NE+ KL
Sbjct: 134 KEQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKL 191

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +      I    V+ ++  T    +  ++    +  I  A+      L +      +L
Sbjct: 192 ALFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKIL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 F+LL ++  +        +  I    K      +  L ++ R  +   + E ++
Sbjct: 252 ALLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAIN 308

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILY--IAQTACKNNNFYK 350
           ++    +   K   +++ +  + +L    A+ A    +  +
Sbjct: 309 ELADADYEV-KSGAVDRRLAVELLLMRWSARPAQAGRHGRR 348


>gi|261418469|ref|YP_003252151.1| DNA polymerase III subunit delta [Geobacillus sp. Y412MC61]
 gi|319767570|ref|YP_004133071.1| DNA polymerase III subunit delta [Geobacillus sp. Y412MC52]
 gi|261374926|gb|ACX77669.1| DNA polymerase III, delta subunit [Geobacillus sp. Y412MC61]
 gi|317112436|gb|ADU94928.1| DNA polymerase III, delta subunit [Geobacillus sp. Y412MC52]
          Length = 348

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 127/341 (37%), Gaps = 20/341 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  L+ E   +            ++L V +  E    I     E  +   F 
Sbjct: 16  PLYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEET--PIEAALEEAETVPFFG 73

Query: 82  KKKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           ++++ILI++        EK++   L  LE  +       I++  +   ++ +   + K+A
Sbjct: 74  ERRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLA 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++ + V+  +   +    L   +   +       S EA  +LL   G    A  NE+ KL
Sbjct: 134 KEQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKL 191

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +      I    V+ ++  T    +  ++    +  I  A+      L +      +L
Sbjct: 192 ALFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKIL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 F+LL ++  +        +  I    K      +  L ++ R  +   + E ++
Sbjct: 252 ALLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAIN 308

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYI--AQTACKNNNFYK 350
           ++    +   K   +++ +  + +L    A+ A    +  +
Sbjct: 309 ELADADYEV-KSGAVDRRLAVELLLMRWGARPAQAGRHGRR 348


>gi|170017694|ref|YP_001728613.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20]
 gi|169804551|gb|ACA83169.1| DNA polymerase III, delta subunit [Leuconostoc citreum KM20]
          Length = 333

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + +  +N  L++F  +  G +  LI     Q  K I  +     +    +    Q+++S 
Sbjct: 6   LYQQIQNNALANFYVVI-GDEDILIQ-RAKQAFKAIIKSDDREMNFSQFDLS--QQDLSE 61

Query: 70  FWNEINSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
             ++  S   F  +++ILI+N           +   D L ++I   + +++++   N++K
Sbjct: 62  VIDDAMSLPFFGDRRVILIQNPEFLTAKGKISETNQDQLSKLIESPVADNVVVFLINDLK 121

Query: 123 KNNTLRKIAEKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            +   RK   K        I     N+      I + L     ++S +A Q L+      
Sbjct: 122 IDK--RKKITKQVLKHAEQIELAALNESAAKQAITQQLQQQNYTMSPDALQELVVRTNAQ 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                NEL KL +Y + D  IT   V  ++  T    + ++++A +  KI  A+++    
Sbjct: 180 YTVMVNELPKLLAYAVYDKKITLDAVNALVPKTLTANVFDLVDAVMTKKIKQALIIYRAL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L +  P+  +      +F+LL     I+       ++ I +    I P +  + ++ L  
Sbjct: 240 LQNGEPALRVNAVLTGQFRLL-----IQVAGLKGSDQEISQQLGGIHPYRIKLARKMLGK 294

Query: 301 WNKNLVR 307
           +N   +R
Sbjct: 295 YNLPALR 301


>gi|254787752|ref|YP_003075181.1| DNA polymerase III subunit delta [Teredinibacter turnerae T7901]
 gi|237685727|gb|ACR12991.1| DNA polymerase III, delta subunit [Teredinibacter turnerae T7901]
          Length = 349

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 17/326 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA + + +              V++  G +  L  E  +  ++           L   +A
Sbjct: 1   MAKLRADQL---PGALKKRLAPVYLVTGDEPLLSQESCDAIRQTAKKQGFIERELYHTDA 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                     +N  N+ SLF+ KKII   I N          + E       + ++++ S
Sbjct: 58  GFSWDE---LYNATNAMSLFADKKIIEIRIHNGKPGDAGSKAILEFCANINDDTLLLLVS 114

Query: 119 NEIKKNN---TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
            +I   +      K  ++   V+ I  +P     L   ++  L     +   EA  IL A
Sbjct: 115 PKIDSRSQNSKWYKAIDQAGEVITI--WPVGPAQLPRWVDTRLKQAGLNADSEAIDILCA 172

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
              G+ +A+  E++KL      +  I  Q + + + D+       +++  I G    A  
Sbjct: 173 KTEGNLLAAVQEVEKLKLVAEGN-FIDAQMMANAVMDSARYDTFGMVDKAIFGDSRAAAE 231

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
                 A    + ALL    +  + L  I    +         +      +   ++ + +
Sbjct: 232 SLQGLRAEGTEALALLWALTRDIRTLTNIKEGLQAGENFD---LAAKRNGVWDKRKPLFK 288

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321
           ++++      +   L K      +A+
Sbjct: 289 QAIQRHKLPQLYGLLRKTALADRIAK 314


>gi|291458006|ref|ZP_06597396.1| DNA polymerase III, delta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419338|gb|EFE93057.1| DNA polymerase III, delta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 335

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 110/315 (34%), Gaps = 14/315 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V++ YG +  L       F++            +  +  E    +    + + +    
Sbjct: 28  RPVYLLYGEESYLKTSYKRSFREAFGGKDS-----MNYSYFEGNVELDELLSVLETLPFL 82

Query: 81  SKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++ +++++E+    +      L   + K   +  +++   E+ K N L K+ ++      
Sbjct: 83  AEGRLVILEDSGFCRHSAPERLCAYLPKMPKSSHLMLIEKEVDKRNRLYKLLDQGGLCCE 142

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           ++    ++  L   +   L    K I   A  +LL   G        ELQKLS+Y  E  
Sbjct: 143 MA--EQDERALSAWVARILKKEGKRIRPAAMALLLERTGKSMEHILTELQKLSAYLGERE 200

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           L+ E+ +  I+       + E+++   +G    A+      LA +     +L  F + F 
Sbjct: 201 LVEEEDLDAILSQNAEDRVFEMLSELGRGNRAGALCCYRELLAREEAPMKILALFRRSFN 260

Query: 260 LLEKIHIIKECSNISFEKI-IQKTEKNIIPMKRNILQESLRIWNKNLVRETLH--KIDHR 316
            L       E      E   I   +  I      ++ ++     ++L        + D  
Sbjct: 261 QLLLARECVEKGRNERESAGILGLKPYI---AGKLMAQARHSTTQDLKERLARCLRYDAA 317

Query: 317 IHLARKKKYLEKNII 331
           I   +    +   ++
Sbjct: 318 IKSGKLSDRMAVELL 332


>gi|320102809|ref|YP_004178400.1| DNA polymerase III subunit delta [Isosphaera pallida ATCC 43644]
 gi|319750091|gb|ADV61851.1| DNA polymerase III, delta subunit [Isosphaera pallida ATCC 43644]
          Length = 382

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 121/326 (37%), Gaps = 16/326 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNI------SITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           + +G +  L   ++             +       +L  L+       ++  ++E  +  
Sbjct: 27  VIFGDEPFLKSRVLAALLDRALGPNHRAEDADADMALCRLDGEAASAQVARVFDEARTLP 86

Query: 79  LFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             +K++++++E       K    LE+ +       ++I+       N TL K+ EK    
Sbjct: 87  FLAKRRVVVVEEADEFVIKARKELEKFVQYPPPTGVLILSLKSFPSNTTLAKLTEK--IA 144

Query: 138 LAISCYPDNKIHLMDLIEESLLIG-QKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           LA+ C    +  +  L+ +         +  +A ++++  +G +     NEL KL++Y  
Sbjct: 145 LAVDCRAPKEAEMPGLLIQLARKDHGLKLESDAARLMVELVGPELGLMVNELGKLAAYVG 204

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT   V  ++    VL I ++I+    GK   A+   D  LA+  P   L+     
Sbjct: 205 TAQTITRDDVAAMVGSGRVLEIWKVIDLATTGKAGEALDALDRLLAAGEPPIKLMAAMTT 264

Query: 257 KFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
               L+  H      + ++ E+  +        +++ + Q +      + V      +  
Sbjct: 265 TL--LKVAHAGRLRVARMTPEQAARSAGIPPFGVEKMVAQHA--HLGPSRVARLSSLLLQ 320

Query: 316 RIHLAR-KKKYLEKNIIFQTILYIAQ 340
                +       + I+ + I+ +A+
Sbjct: 321 TDLDLKGFSNLPPRTILERLIVELAR 346


>gi|229827348|ref|ZP_04453417.1| hypothetical protein GCWU000182_02736 [Abiotrophia defectiva ATCC
           49176]
 gi|229788286|gb|EEP24400.1| hypothetical protein GCWU000182_02736 [Abiotrophia defectiva ATCC
           49176]
          Length = 298

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 8/255 (3%)

Query: 43  KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLE 102
           KN  I   D  +L   +      +I+       +   FS  + IL+EN        +   
Sbjct: 10  KNAVIGSGDKMNLNTFSGK--ITDINNIIEPAETLPFFSDYRCILVENSGLF-SSANEFS 66

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162
           E I K   + +II   N++ K   L K   K    +      +N   L++ I +     +
Sbjct: 67  EYIAKIPESTVIIFAENDVDKRTKLYKTVNKTGCAVEFEIQKEN--DLINTIIKKFAKDK 124

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +I  E  +  +  +G       +E  KL SY  E   +T++ +  +        I +I+
Sbjct: 125 ITIDYELAKYFVNRIGTSMDELYSEADKLISYVYEKRTVTKEDIDTVCERQLSDKIFDIM 184

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           +   +    NAI         +     +L      F  L  I  +        E      
Sbjct: 185 DYMGKKDRENAIGFYLDLTGLQESPVKILALINTHFTRLYNIKQLM-AEGKQGEIASLLK 243

Query: 283 EKNIIPMKRNILQES 297
                   +  ++++
Sbjct: 244 IPPFFV--KKYVEQA 256


>gi|134302695|ref|YP_001122663.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050472|gb|ABO47543.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 325

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 120/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQL---GLSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
              S  +L    ++ ++L ++ 
Sbjct: 234 NDKSPLVLWALKRELRILSQLK 255


>gi|149192419|ref|ZP_01870617.1| DNA polymerase III subunit delta [Vibrio shilonii AK1]
 gi|148833748|gb|EDL50787.1| DNA polymerase III subunit delta [Vibrio shilonii AK1]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 124/326 (38%), Gaps = 20/326 (6%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSL-VVLNALEIQKNISTFWNEINS 76
           H  ++ +G++   + E   LI +  + +    H  FS+   L+  ++       ++   +
Sbjct: 17  HGCYLVFGNEPLFVQESRDLIIRHARQLGFEEHHRFSVNSSLDWNDV-------YDCTQA 69

Query: 77  TSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            SLFS K+II +          +   L EI      + ++II   ++ +     K   K 
Sbjct: 70  LSLFSSKQIIELSIPESGINAAIAKQLLEISSHLHEDIVVIITGTKLTRAQESAKWF-KA 128

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +SC   +  HL   +             EA Q+L     G+  A    L+KLS  
Sbjct: 129 LNGCLVSCAAPDVKHLPQWVMRRCNASGLKPDGEAIQLLCQWHEGNLFALSQSLEKLSL- 187

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +    V++ +   +   +   I+A ++GK   A  +     A  + +  LL   
Sbjct: 188 LYPDGQLNLLRVQESLSRHNHFTVFHWIDAILEGKPKRANRILLQLEAEGVEAVILLRSI 247

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++ Q L K+  +   S+++  ++       +   K+ +   +L+      +++ +  + 
Sbjct: 248 QKELQQLIKMQQMLTQSSLN--QVFDSFR--VWQNKKPLYSAALQRLTAIRLKQAMQLLA 303

Query: 315 HRIHLARKKKYLEK-NIIFQTILYIA 339
                 + +  L     + Q  L ++
Sbjct: 304 SIEVQVKTQYELSPWPFLHQLTLNLS 329


>gi|167630488|ref|YP_001680987.1| DNA polymerase iii, delta subunit, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593228|gb|ABZ84976.1| DNA polymerase iii, delta subunit, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 367

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 120/357 (33%), Gaps = 39/357 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L+ E++ +     +      F++  L      + I+       +    +
Sbjct: 17  PVYLIYGDEPYLMSEILEELMARFAGQPGGEFNMDRLEGDVTAEMIA---EAAQTPPFMA 73

Query: 82  KKKIILIENLSTEKKV---------------------------LDCLEEIIIKNICNHII 114
           +++++++ +    +                                L + +        +
Sbjct: 74  ERRLVIVRDTPLLRAARGSDGADGEGASSGKGKGASRFKTMEPEAPLLQYLADPSRTTCL 133

Query: 115 IIKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +  S   + K   L K  EK    + I    ++   L +   +     +     EA  +L
Sbjct: 134 VFFSPSGVDKRKRLYKAIEKAGHAVEIKKLSES--DLRNWAAQQAKAMKLPFEAEALNLL 191

Query: 174 LANLGGDRIASRNELQKLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           +   G D      EL+KL ++  E      +T + V+ ++  T    +  I +A   G++
Sbjct: 192 IDRAGDDLGRLVLELEKLRNFLGEPSPTRRVTPERVRRLVPATPEDNVFAIADALGDGQV 251

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
            NA+ +    + +      LL   ++  + L  I      S +      ++ +     ++
Sbjct: 252 DNALRITCDLVRNGQHPIRLLFLIIRHVRQLLHIK-ELTASGLRKTDWAREMKLPAGVVR 310

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           +  L+     + +  +R   H++       +      +  +   +L  A    ++N 
Sbjct: 311 K--LESQADRFPREELRRLYHRLTAADVAIKTGAGEARQTLELCLLAFAGEGIQSNK 365


>gi|300113164|ref|YP_003759739.1| DNA polymerase III subunit delta [Nitrosococcus watsonii C-113]
 gi|299539101|gb|ADJ27418.1| DNA polymerase III, delta subunit [Nitrosococcus watsonii C-113]
          Length = 344

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 124/324 (38%), Gaps = 15/324 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  LI E  +  +            ++ +       + +         SLF+
Sbjct: 19  PVYLLFGDEPLLIEEGADLIRSRAQSQGFYEREVMHIERGF---DWAQLQWATKGLSLFA 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +     +  +     L         + +++I S+++++ + + +       + +
Sbjct: 76  ARRLIELRLPKNAVSEAGTKVLRTYGENPSPDTLLLIISDKLERRHQVSRWFSALEQTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +  +   L   IE  L     S+++EA  +L+  L G+ +A   E+ +L+      
Sbjct: 136 VVQIFKVDISSLSRWIEHRLRSRSLSLTQEAVAVLVERLEGNLLACAQEIDRLAL-LFPK 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I    V++I+ D     +  ++ + + G +     +     A  +    ++     + 
Sbjct: 195 ETIDASRVEEIVADNARYDVFRLMESALAGDVVQIARIWRGLQAEGVEPVIVVGALAWEL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLHKIDH 315
           + L ++           ++ +++    +   ++ + +++L   + +      + L KID 
Sbjct: 255 RRLARM-ARACAQGKPVDQTLREQR--VWERRKIMTKKALSRHSVHRWLLFLQQLGKIDC 311

Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339
            +  A  +    + I+ Q  L IA
Sbjct: 312 MVKGA-VRGRPWEAIL-QLCLAIA 333


>gi|169829290|ref|YP_001699448.1| hypothetical protein Bsph_3840 [Lysinibacillus sphaericus C3-41]
 gi|168993778|gb|ACA41318.1| Hypothetical yqeN protein [Lysinibacillus sphaericus C3-41]
          Length = 343

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 128/329 (38%), Gaps = 26/329 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I E I + K+ +        +   L+ + +        +E ++   FS
Sbjct: 23  PVYLLVGEESYFIDETIKRIKEAMGPEEELEMNTFDLDEVPVDA----VMDEADTIPFFS 78

Query: 82  KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           ++K+I+ +N S  K            +  LE  +       + +  +   K +   RK  
Sbjct: 79  EQKLIIAKNASFLKAAEKGKEKIDHDVKRLEAWLSNPSDFSVTVFIAPYEKLDE--RKKV 136

Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            K      L I      +  L   I+  +     SI+++A ++L+  +G + +  + E+ 
Sbjct: 137 TKMMKEHALLIEAATPKEQDLAVWIQSIVKGQGNSITQDAIELLVTMVGANMLQLQMEID 196

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+ Y  E   IT   V+D++  T      +++NA +     +A+ +    L  K     
Sbjct: 197 KLTLYLGEGGEITVSLVEDLVAKTLEQDAFKMLNAYLANDSVSALSIYHDLLRQKQEPIM 256

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L+       + +  +  +        ++I +  +  I P +  ++ E     ++  +   
Sbjct: 257 LVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMTEQRNRPSEESLLRA 313

Query: 310 LHKIDHRIHLAR-----KKKYLEKNIIFQ 333
           L+++       +     +++YLE  ++ Q
Sbjct: 314 LYQLAEVDLQLKSTGGNRERYLELFLLRQ 342


>gi|187932239|ref|YP_001892224.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187713148|gb|ACD31445.1| DNA polymerase III, delta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 325

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNIST 69
           KN   ++ +FI  G +       I ++ NQFK KN  I+YHD            ++NI  
Sbjct: 11  KNDLTAYKLFIITGDEPLQKHNTIEKITNQFKTKNFEISYHDL----------SEQNIDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +NE++S SLFS  K I    +   +KK+   L + +I +  N  +++ S  +KK NT  
Sbjct: 61  LYNEVDSLSLFSIDKFIQFNFDKPPQKKLQQTLVDKLINDDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       K   +       DN I+++D   + L     S++KEA Q+L     G+ IA+
Sbjct: 120 KWFQSLEHKAIHIRIFQPNLDNAINIIDYETQQLS---LSLTKEATQLLALKTEGNLIAT 176

Query: 185 RNELQKLSSYCLEDILITEQH-VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  L+ LS    +D  + +++ ++  + +     + ++  A +      A+ + +  L  
Sbjct: 177 KQILKLLS---RQDSRVFDENTIRPFLHEHANFDVFDLSEAILSQHKSKALKILNSILNE 233

Query: 244 KMPSHALLHGFLQKFQLLEKIH 265
                 +L    ++ ++L ++ 
Sbjct: 234 NDKPPLVLWALKRELRILSQLK 255


>gi|51891613|ref|YP_074304.1| hypothetical protein STH475 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855302|dbj|BAD39460.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 344

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 113/330 (34%), Gaps = 23/330 (6%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
           H+ + +  + +     V++ YG +  L+ E+    +  +       F+  VL        
Sbjct: 4   HEVLDEIGRGIL--RPVYLVYGEEGFLVEEVYRALRAAVVHPETADFNFHVLEPG--PDQ 59

Query: 67  ISTFWNEINSTSLFSKKKIILI----------ENLSTEKKVLDC----LEEIIIKNICNH 112
           +S   +   +   F++K+++++             S E+   D     L   +   + + 
Sbjct: 60  LSQALSLAQTQPFFAEKRLVVVKECPAIVPRRRGGSDEQAPADAGDAALLGYLKAPVAST 119

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172
           +++  + ++       K         A+ C P          +       K +  +A  +
Sbjct: 120 VLLFLAAQVDVRRKTTKALMAA--GAAVECRPLKPEDAAMWAQRRAQSEGKRLGGQAAHL 177

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L+  +G D      EL+KL  Y      I    V+ ++       I  + +A ++ +   
Sbjct: 178 LVERVGTDLGMLARELEKLVLYVGPAGEIRAADVETMVSAMAETEIFRLSDAVLRRERAR 237

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+ L +  L        LL     +F+ L  +  +     +S ++  Q    ++ P    
Sbjct: 238 AVALLERLLQQVDHPLQLLSALTGRFRQLLLVKALA-ARRLSPKEAAQLA--HMHPYAYG 294

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            L E     ++  +   L ++       + 
Sbjct: 295 KLAEHAATVDRAEIVRALKRLLEADLAIKS 324


>gi|254284078|ref|ZP_04959046.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR51-B]
 gi|219680281|gb|EED36630.1| DNA polymerase III, delta subunit [gamma proteobacterium NOR51-B]
          Length = 343

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 115/309 (37%), Gaps = 14/309 (4%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            ++  +  ++    L      ++  G +  L+ E  +  +        D    +      
Sbjct: 2   QVKPEQLSRQLDAGLA---RCYLVTGDEPLLVQESADAIRAAARAAGCDERERIDTTTPA 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNE 120
             ++         + SLF+++K++ +   S     +    L+  + +   + ++II + +
Sbjct: 59  GWQD---LLQSGGALSLFAQRKLVEVHVPSGKPGTEGSKALQAYLDREGDDVLLII-AGK 114

Query: 121 IKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           I K++   K         + ++ +P +   +   ++  L        +EA Q+L   + G
Sbjct: 115 IDKSSRRGKWFNALDQAGVVVTVWPVSPQEMPRWLQGRLQQAGLRADREALQLLSERVEG 174

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E++KL     +   IT Q V + + D     +  +I+  + G    A+     
Sbjct: 175 NLLAAMQEVEKLKLLA-DSNDITAQTVIECVFDNARYSVFGLIDKALAGDARGALRTLRG 233

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A       LL    ++ +LL +I         +    + +  + +   +  ++Q+ L 
Sbjct: 234 LRAEATAPPVLLWAINREVKLLAEI-TDDIARGTAAHSAMNQ--RGVWRNRTALVQQGLD 290

Query: 300 IWNKNLVRE 308
               + + E
Sbjct: 291 RHTPSSIAE 299


>gi|73662480|ref|YP_301261.1| DNA polymerase III subunit delta [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494995|dbj|BAE18316.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 324

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 123/299 (41%), Gaps = 18/299 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +   YG    LI +   +   N      D F+ V  N    + +++    E  +  
Sbjct: 1   MSNNIITIYGEVPELIEKKSAEEINNYLNAPKDDFNFVKYNL--YEHDLAPVIEESLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK++L++N    + EK        +D L E I K   + +II +   +++ +   L
Sbjct: 59  FFSDKKVVLVQNAYLFTGEKPPKDLNHNIDQLIEFIEKYDGDTLIIFEVYHSKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +M  +++ L    K I ++A  + +   G +    + E
Sbjct: 119 VKTLKKNAQLKKIEQMSEEE--IMQWMKKELHENFKDIKQDALDLFIELTGVNFNIVKQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL  +  +   I +Q V  I+  +    +  + +   + K  NAI L +  +A K   
Sbjct: 177 LEKLILFLGDRSTINKQDVYQIVNRSLEQNVFLLTDYIQKNKKSNAIQLVNDLIAMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             LL      ++L  +  I+ +    S ++I +    N+ P +  +     R +    +
Sbjct: 237 IKLLALITSNYRLFYQSKILSQ-KGYSGQQIAKTI--NVHPYRVKLALNQARNYQLENL 292


>gi|85375279|ref|YP_459341.1| DNA polymerase III delta subunit [Erythrobacter litoralis HTCC2594]
 gi|84788362|gb|ABC64544.1| DNA polymerase III delta subunit [Erythrobacter litoralis HTCC2594]
          Length = 345

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 108/322 (33%), Gaps = 13/322 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           VF F G D+       +   + +     DP   + L+  +++++     +E  S+SLF  
Sbjct: 21  VFFFCGPDE----AGASAAAEAVCGALADPGERIELSGADLKRDPVALGDEARSSSLFGD 76

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + I +     E    D L  +         +++ ++     +   K+  +    L    
Sbjct: 77  ARHIFVRANGDEAH--DALANLFAGEGDACPVLVVASAATDKSRTAKLLARREDALVAML 134

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LED 198
           YP +   +   + +        +  +  + +      D+  +R+E++KL+ Y        
Sbjct: 135 YPPDLRSMTATVRDLADTAGVRLGGDLAERIARAATLDQRLARSEIEKLALYLDAAPATP 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
                Q    I   T       I+NA + G                + S A+     ++ 
Sbjct: 195 KQADAQDWHAIGAKTEEDGFMPIVNAALGGHAKRLPGELQRMRELSINSVAIALAVERRT 254

Query: 259 QLLEKI--HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             L ++   + +      F +  ++  + I       L+E LRIW    +   + ++   
Sbjct: 255 AQLAQLAGRLGRSGDVDGFIQSEKQARR-IFWKDERDLREQLRIWRGARLDRLVERVTAL 313

Query: 317 IHLARKKKYLEKNIIFQTILYI 338
                      + ++ Q +  I
Sbjct: 314 HRSLLANSQSGELLLAQELTTI 335


>gi|90022950|ref|YP_528777.1| DNA polymerase III subunit delta [Saccharophagus degradans 2-40]
 gi|89952550|gb|ABD82565.1| DNA polymerase III, delta subunit [Saccharophagus degradans 2-40]
          Length = 348

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 128/358 (35%), Gaps = 22/358 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I + + +    KN      V +  G +  ++ E  +  +          F+   L+ 
Sbjct: 1   MARINADQ-LASHIKNALP--PVILITGDEALVVQESCDAVRAAARKQG---FTERELHH 54

Query: 61  LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
            +   +        NS SLFS+KKII   + N          L E+  K   + +I++  
Sbjct: 55  TDAGFSWDQLLQSANSLSLFSEKKIIEIRVTNGKPGDAGSKALVELCQKPSADTLILLVF 114

Query: 119 NEIKKNNTLRKIAEKFTSVLAISC----YPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
            +I K     K      ++ AI C    +P     L   I++ L          A  IL 
Sbjct: 115 PKIDKRAQNSKWF---KALEAIGCIVTVWPVGMPQLPRWIDQRLKAAGLRADSAAIDILA 171

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
           A + G+ +A+  E++KL      + LI  Q +   + ++    +  +++  + G    A 
Sbjct: 172 AKVEGNLLAAAQEIEKLKLVA-TNELIDSQLMTSAVMESARYDVFGLLDKALLGDAQAAS 230

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
                          +L    ++ ++L  I    +      +         +   ++ ++
Sbjct: 231 RTLLGLKGEGTEPTVILWALTREARILASIKEATDAGEHFGQAA---KRNGVWDKRQRLV 287

Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
           Q++L   +   +   L K        R  K + +   +  +L I  +    ++F  RT
Sbjct: 288 QQALSQQSAKKLHMLLRKCA---LADRTIKGMSRGDAWAILLDITLSLAGVDSFTPRT 342


>gi|148657183|ref|YP_001277388.1| DNA polymerase III subunit delta [Roseiflexus sp. RS-1]
 gi|148569293|gb|ABQ91438.1| DNA polymerase III, delta subunit [Roseiflexus sp. RS-1]
          Length = 315

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 115/303 (37%), Gaps = 12/303 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG D+    E +   K  +     D  ++  L+      +         +    + 
Sbjct: 2   LYLIYGPDEYARSEALAALKARVPADVAD-LNMTTLDGRRTTLD--DLVTACEAMPFLAD 58

Query: 83  KKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138
           ++++++ +L   +K     D L   + +      ++ I+S ++ + + L    +K  SV 
Sbjct: 59  RRLVIVYDLLKHQKAGKERDELRAYLERVPDFCDLVFIESEDVDRRSALFTFLKKHASVH 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
              C P     L+  + E       S+ ++A Q L    G D     NEL KL+S+    
Sbjct: 119 --ECLPREGAALLTWLHERAQSLDVSLDRDAAQRLTLLAGNDGRLLVNELAKLASFVGRG 176

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT + V  ++ D     +   I+     +   A+            +  +L    ++ 
Sbjct: 177 GRITVREVDLLVADMQEQNLFAFIDDLSARRRSAALSSLRRLFDDGQAAQYILFMMARQV 236

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           ++L  +  +     +  + I  +  +    +++ I  E +R ++   +R+   ++    H
Sbjct: 237 RILLGVKDLV-AQRMRPDDIAAQLGQKPFVVRKAI--EQVRGFSDADLRQLHRRLLELDH 293

Query: 319 LAR 321
            ++
Sbjct: 294 ASK 296


>gi|126653872|ref|ZP_01725719.1| DNA polymerase III subunit delta [Bacillus sp. B14905]
 gi|126589597|gb|EAZ83736.1| DNA polymerase III subunit delta [Bacillus sp. B14905]
          Length = 388

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 129/329 (39%), Gaps = 26/329 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I E I + K+ +     D   +   +  E+  +     +E ++   FS
Sbjct: 68  PVYLLIGEESYFIDETIKRIKEAMG--PEDELEMSTFDLDEVPVDA--VMDEADTIPFFS 123

Query: 82  KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            +K+I+ +N S  K            +  LE  +       + +  +   K +   RK  
Sbjct: 124 AQKLIIAKNASFLKATEKGKEKIDHDVKRLETWLSNPSDFSVTVFIAPYEKLDE--RKKV 181

Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            K      L +      +  L   I+ ++     SI+++A ++L+  +G + +  + E+ 
Sbjct: 182 TKMMKEHALLVEAETPKEQDLAVWIQSNVKAQGNSITQDAIELLVTMVGANMLQLQMEID 241

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+ Y  E   IT   V+D++  T      +++NA +     +A+ +    L  K     
Sbjct: 242 KLTLYLGEGGEITVSLVEDLVAKTLEQDAFKMLNAYLANDSVSALSIYHDLLRQKQEPIM 301

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L+       + +  +  +        ++I +  +  I P +  ++ E     ++  +   
Sbjct: 302 LVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMTEQRNRPSEESLLRA 358

Query: 310 LHKIDHRIHLAR-----KKKYLEKNIIFQ 333
           L+++       +     +++YLE  ++ Q
Sbjct: 359 LYQLAEVDLQLKSTGGNRERYLELFLLRQ 387


>gi|81428678|ref|YP_395678.1| DNA polymerase III subunit delta [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610320|emb|CAI55369.1| DNA-directed DNA polymerase III, delta subunit [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 342

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 125/331 (37%), Gaps = 23/331 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +  LI E   Q  K+         +    +      +++   ++  S   F 
Sbjct: 17  PIYLVLGQESALI-EKARQLFKHYLPEEEQTMNFASYDLATT--DVANALDDAESAPFFG 73

Query: 82  KKKIILIEN-----LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           +++I+ ++N         K  LD      +  + K      +++ +   ++ +   + K 
Sbjct: 74  ERRIVFMQNPYFLTGEKVKNKLDQDLVRFQAYLEKPQPTTSVVLFAPYPKLDERKKIVKQ 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  S++++     N+  +  L+   L      I  EA  +L++    D      EL K
Sbjct: 134 LKKVASLVSVE--KVNERQVQQLVTAELKQQGMQIESEALALLISKTNSDYSQIMAELPK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  +   IT   V +++  +    +  ++   +Q K+   + +    L  K     +
Sbjct: 192 LMLYAQQTKQITTAAVAELVSSSIEDNVFSLVPLVLQKKVGPVLTMYHELLLQKEEPLKI 251

Query: 251 LHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
               + +F+LL ++ I+ E      +   +++     I P +  +  + ++ ++K  + +
Sbjct: 252 NAILIGQFRLLLQVKILFEKGYSQGNLASVLK-----IHPYRIKLAMQQIKHFSKQTLAQ 306

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
               ++      +  +   + +    +L  A
Sbjct: 307 AYLGLEEIEVKIKTGQGQPELLFELFMLQFA 337


>gi|71281960|ref|YP_268458.1| DNA polymerase III, delta subunit [Colwellia psychrerythraea 34H]
 gi|71147700|gb|AAZ28173.1| DNA polymerase III, delta subunit [Colwellia psychrerythraea 34H]
          Length = 354

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 114/316 (36%), Gaps = 27/316 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +        N      +      FS ++  + +   +     +E  S SLF+
Sbjct: 18  PVWLVFGDEPWQKD---NSLAAIKNNAKSQGFSEIIRFSSDTAFDWQQLLDEYQSLSLFA 74

Query: 82  KKKIILIE------NLSTEKKVLDCLEEIIIKN------ICNHIIIIKSNEIKKNNTLRK 129
            ++II +E        +  K +L  L E + ++        + I I    ++   +  RK
Sbjct: 75  SQRIIEVELTTVKVGDAGNKALL-ALAERLTQDINSGHVPQDVIFIFHGAKLDAASANRK 133

Query: 130 IAEKFTSVLAISCYP---DNKIHLMDLI-EESLLIGQKSISKEAKQILLANLGGDRIASR 185
                 S+  + CY    D ++ LM           + +IS E   +L+    G+ +A  
Sbjct: 134 WF---KSLTQLGCYLPLYDIELKLMPQWLNNQARQLKLNISPELNALLIELFEGNLLALA 190

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            EL KL         I+ +  + +I         ++I   ++G     I + D      M
Sbjct: 191 QELDKLVL-LFGSQTISVEQAEQLIIKQAKFNPFQVIEVLLRGDCAKCITMLDQLQQEGM 249

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               L+  F ++   L  +         S   I ++    I   ++ + Q +L     + 
Sbjct: 250 APAQLIWVFHKEINQLYAMLNQL-AQGESIANIYKQYR--IWDKRKPLYQHALTHIKLDN 306

Query: 306 VRETLHKIDHRIHLAR 321
           V+  + +I     L++
Sbjct: 307 VKRAMMRIADIDLLSK 322


>gi|332975797|gb|EGK12678.1| DNA-directed DNA polymerase III delta subunit [Desmospora sp. 8437]
          Length = 338

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 130/342 (38%), Gaps = 38/342 (11%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD---PFSLVVLN 59
            IES +F             V++FYG +  L+ E I + +  +     D     +++ L 
Sbjct: 8   EIESGRFA-----------PVYLFYGMETFLMEEAIKRLEDAVLGDGEDRQWNHTVMDLE 56

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIIL---------IENLSTEKKVLDCLEEIIIKNIC 110
              +Q        E  + S F   ++++               ++   + L     + + 
Sbjct: 57  ETSVQD----LVLEAETPSFFGGHRLVVGKNAWFLTSARRREKQEHRPEELVRYAARPLE 112

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
            ++++I     K +   + + +    V  +  +P +   L   +   L      +     
Sbjct: 113 GNVLVITVPAEKPDTRKKVVKDLKKQVREVVFHPLDSKELPRWVAGKLNETGVKVHPRTA 172

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           ++L+  +GGD      E++KL++Y      IT + V +++  T    + ++++   + + 
Sbjct: 173 EVLIRQVGGDLRLLDMEIRKLATYAGPSGSITPETVTELVSRTLEQDVFKLVDRVARRRT 232

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
              I L    L ++     +L   +++F+L+ ++ ++     +S  +I    + +  P+K
Sbjct: 233 AEGIALFYDLLQNREEPIRILALIIRQFRLMLQVKVLA-AKGMSEREIASTLKVHPYPVK 291

Query: 291 RNI------LQESLRIWNKNLVRETLH----KIDHRIHLARK 322
             +       + +LR W    +         +ID  + + R 
Sbjct: 292 LALRQVNTCSEGALREWLFQAIEAEREIKSGRIDKTLAVERL 333


>gi|227432085|ref|ZP_03914098.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352167|gb|EEJ42380.1| DNA polymerase III, delta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 333

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 133/329 (40%), Gaps = 24/329 (7%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +Q+  +N  +++F +I  G ++ L+    + F K +        +   ++  E  + +  
Sbjct: 6   LQQQIENNAMANF-YIVTGEEETLLSHAKSMF-KGLVDQEDRDMNYSQIDLTE--QTLDV 61

Query: 70  FWNEINSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
             N+  S   F  +++++++N            +  + L ++  + +  +I++  +N++K
Sbjct: 62  VINDAMSVPFFGDRRVVVVKNPQFLTATGKVGDRYQELLLKLFDQPVLQNIVVFFANDLK 121

Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
             K   L K+  K    +++     N+      I + +     +I  EA   L+      
Sbjct: 122 LDKRKKLAKVLLKTAENISLP--ALNERQAQQAIVQQIDQRSYAIEPEALHELMQRTNAQ 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
               +NEL KL +Y  +   IT   V  ++  T      ++++A I+ +   A+ L    
Sbjct: 180 YTDMKNELPKLITYAEQTKKITLDVVSALVPKTLTANAFDLVDAVIKRRPQEALTLYHDL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L +      L      +F+LL    +     + + + I  + +  + P +  + +E+LR 
Sbjct: 240 LQNGEAPLRLNAVLTNQFRLL----LQVAGLSGNDQDIGAQLK--VHPYRVKLAKEALRS 293

Query: 301 WNKNLVRE---TLHKIDHRIHLARKKKYL 326
           +    VR     +  I+ ++    +   L
Sbjct: 294 YPPQFVRTGYLGMIDIETQLKSTSQDPEL 322


>gi|94969383|ref|YP_591431.1| DNA polymerase III, delta subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551433|gb|ABF41357.1| DNA polymerase III, delta subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 374

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 130/363 (35%), Gaps = 33/363 (9%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + +F+ +  +    + +VFI  G +     +  +    ++       FSL  ++  +   
Sbjct: 7   TERFVSEVEQRKLKAGYVFI--GDEAFFRKQCRDAILTHLVPPDVREFSLYEMDLSD--S 62

Query: 66  NISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
            I    +   + SL +  ++  +                  +E+       + +II  ++
Sbjct: 63  GIGEVLDRARTPSLMAPFQVFFVRGTKNLYGRGKHDDEFAAIEDYFKNPNPDALIIFVAD 122

Query: 120 EIKKNNTLRKI-------AEKFTSVLAISC-------YPDNKIHLMDLIEESLLIGQKSI 165
            I     +RK+        EK    L   C         DN+     L  +        +
Sbjct: 123 HISIPADVRKMDYQDKERYEKIRETLGDWCSLIEFARVEDNEAAKWAL--QIAQNQGVKL 180

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            ++A + L+ +LGGD +   NEL+KL  Y  E   IT   V+ ++       + E+ +A 
Sbjct: 181 EQDAARELVDSLGGDMMLLANELEKLVLYVGEKKRITLGDVETMVLAAKQRSLYELTDAI 240

Query: 226 IQGKIYNAIMLADFFLASK---MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII-QK 281
            Q     A+ + D  L++      +   L+   + F+ +  I       + +  +++ Q 
Sbjct: 241 SQHDRVKALQVLDAILSTGDGEEAAIGHLYMLARTFRQMLVISERNVRDSRALWQVLWQG 300

Query: 282 TE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
                      +I++++ R  ++  +   +  +       R     ++ I+   IL +A 
Sbjct: 301 FRVPP--FAAEDIIRQARRFKSRRELTRAIRLVAKADLAVRSNPPSKRLILENLILDLAS 358

Query: 341 TAC 343
              
Sbjct: 359 EPR 361


>gi|52786483|ref|YP_092312.1| DNA polymerase III subunit delta [Bacillus licheniformis ATCC
           14580]
 gi|52348985|gb|AAU41619.1| YqeN [Bacillus licheniformis ATCC 14580]
          Length = 354

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 114/304 (37%), Gaps = 16/304 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79
           H V+  YG +  L+ E + + ++ +       F+  + +   ++++      E   +   
Sbjct: 23  HPVYCLYGKETHLLQETVQRIRQAVVDEETKDFNFSIFD---LEEDALDLAVEDAETFPF 79

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
             ++++++ +N +    EKK       L  LE  I +     + ++ +   K +   +  
Sbjct: 80  MGERRLVVAKNPAFLTAEKKKDKLEHNLGVLEAYITQPAPYSVFVLLAPYEKLDERKKLT 139

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                    +           D I        K I  EA + L+        A   E++K
Sbjct: 140 KLLKKHAHMVEAKELTAKETADFIAGLAKSEGKQIEPEAAEELVLLCHASLSAIAQEVKK 199

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS+Y  +   IT + V+ ++       I E+IN  +  K   A+ +    L        +
Sbjct: 200 LSTYTGDRGEITIEDVRKLVARGLEQNIFELINKVVNRKRTEALQIFYDLLKQNEEPIKM 259

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +F+LL +     +      ++I    +  + P +  +  E  R++++  +R  +
Sbjct: 260 MALIANQFRLLMQTKYFSD-QGYGQKQIASNLK--VHPFRVKLAIEQARLFSEQELRNII 316

Query: 311 HKID 314
            ++ 
Sbjct: 317 EQLA 320


>gi|328953430|ref|YP_004370764.1| DNA polymerase III, delta subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328453754|gb|AEB09583.1| DNA polymerase III, delta subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 343

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 122/320 (38%), Gaps = 9/320 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG ++ L+   + + +  ++    D  +   L A EI    +    E  S  L+ 
Sbjct: 17  PVYLFYGEEEFLVRRALTRLEDWLAQK-EDLAARTSLEAGEISLLEA--LTEARSPQLWG 73

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVL 138
            +++++I  +   K   L  LE  +        +++ +  +K  +  T R          
Sbjct: 74  GRQLVIIWRMERYKAKELAALESYLANPASQTCLVLVAIGLKSKDVQTHRIWRRLQEQDA 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A+  +   +  L   +++      K +S +A + L+  +G + +    EL+KL  Y  ++
Sbjct: 134 ALGFFRLRENELPGWLQKEARQLGKMLSPDAARQLIEAVGFNLLDLHQELEKLVLYVGKE 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT + V  +        I E+++A  Q +   A+ + +  L    P   +L    ++ 
Sbjct: 194 QTITAEAVAQLSSHGRTHSIFELVDALGQSRPDKALKVLNRLLELGEPPAIILVMLARQV 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           +LL +          S E         I+      LQ     +    +++ L ++     
Sbjct: 254 RLLMRTREALRRGLGSKELAQTLELPGIV---AEKLQRQAGGFRLAQLQDHLIRLHEADL 310

Query: 319 LARKKKYLEKNIIFQTILYI 338
             +        ++ + IL +
Sbjct: 311 GFKTGMAPPHLLLEKVILEL 330


>gi|56421048|ref|YP_148366.1| DNA polymerase III subunit delta [Geobacillus kaustophilus HTA426]
 gi|56380890|dbj|BAD76798.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 348

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 126/340 (37%), Gaps = 20/340 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++  L+ E   +            ++L V +  E     +    E  +   F +
Sbjct: 17  LYLLYGNEPFLLTETYERLVNAALGPEEREWNLAVYDCEETPVEAA--LEEAETVPFFGE 74

Query: 83  KKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ILI++        EK++   L  LE  +       I++  +   ++ +   + K+A+
Sbjct: 75  RRVILIKHPYFFTSEKEKEIEHDLAKLEAYLKAPSPFSIVVFFAPYEKLDERKKITKLAK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           + + V+  +   +    L   +   +       S EA  +LL   G    A  NE+ KL+
Sbjct: 135 EQSEVVIAAPLAE--AELRAWVRRRIESQGAQASDEAIDVLLRRAGTQLSALANEIDKLA 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +      I    V+ ++  T    +  ++    +  I  A+      L +      +L 
Sbjct: 193 LFAGSGGTIEAAAVERLVARTPEENVFVLVEQVAKRDIPAALQTFYDLLENNEEPIKILA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
                F+LL ++  +        +  I    K      +  L ++ R  +   + E +++
Sbjct: 253 LLAAHFRLLSQVKWLASLGYGQAQ--IAAALKVHPFRVKLALAQAARFADGE-LAEAINE 309

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYI--AQTACKNNNFYK 350
           +    +   K   +++ +  + +L     + A    +  +
Sbjct: 310 LADADYEV-KSGAVDRRLAVELLLMRWGTRPAQAGRHGRR 348


>gi|315649928|ref|ZP_07903008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487698|gb|EFU78001.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 322

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 7/261 (2%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G D+ L      + K  I     D  +        I  ++       N+   FS+
Sbjct: 16  IYVLSGDDEFLKNSYKKRLKSAIVG--EDQMNFAYFEGKGI--DVDVVIEFANTLPFFSE 71

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            + ILIE     K   +     I     +  II    ++ K + L K  ++   +  +  
Sbjct: 72  YRCILIEESLWFKSGNEKFLNYISAKPDSTKIIFVEKDLDKRSKLYKKVKELGYITEL-- 129

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
                  LM+     +    K I+     + +A +G D    ++EL KL S+ L+  +I 
Sbjct: 130 NHPTNDELMNWTGNIINKSGKKITVSNMNLFIARVGNDMERLKSELDKLLSFTLDKDIIE 189

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
           E+ +  +   +    I E++ +    KI +A+ + +  +A K P   ++    ++F  L 
Sbjct: 190 EEDIIAVTSISLTNRIFELVKSITNNKIQDALDIYEDLVALKEPPLKIMILITRQFNQLL 249

Query: 263 KIHIIKECSNISFEKIIQKTE 283
           +I      +  S + II   +
Sbjct: 250 QIK-ELATAGFSEKDIISSMK 269


>gi|331007748|ref|ZP_08330872.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC1989]
 gi|330418432|gb|EGG92974.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC1989]
          Length = 349

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 118/308 (38%), Gaps = 17/308 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  ++ E  +  ++         F+      ++ Q          NS SLF+
Sbjct: 19  PVYLVSGDETLIVQETCDAIRQAARKAG---FTERERYHVDKQFEWQQLLASANSLSLFN 75

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTS 136
            KKII   IEN     +    + E +     +++++I + ++      +   K  EK   
Sbjct: 76  DKKIIELRIENGKPGAEGSKTICEYLAHASDDNLLLIVTPKLDSGTQRSKWVKQIEKAGY 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  +P +   L   +++ L         +A ++L   + G+ +A+  E++KL     
Sbjct: 136 --WIPVWPISAAQLPRWLQQRLQQAGLKADSQAIELLATRIEGNLLAAHQEIEKLRLLA- 192

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +D  ++ + + + + D+    +  +++  + G    A+   +   +       +L    +
Sbjct: 193 KDEWLSPELIANTVADSARYDVFGLVDKALMGDARGAVRNLNGLKSEGTEPITILWALAR 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---I 313
           + ++L  I         +F    +     +   ++ + Q++L   +   +   L +   I
Sbjct: 253 EIRVLLTIASAV-AQGQNFSWAAKNAG--VWDKRQPLAQQALNRLHHKQLTLLLRQANGI 309

Query: 314 DHRIHLAR 321
           D  I   R
Sbjct: 310 DKAIKGLR 317


>gi|163119559|ref|YP_079896.2| DNA polymerase III subunit delta [Bacillus licheniformis ATCC
           14580]
 gi|319644938|ref|ZP_07999171.1| YqeN protein [Bacillus sp. BT1B_CT2]
 gi|18266367|gb|AAL67527.1|AF459916_4 conserved hypothetical protein YqeN [Bacillus licheniformis]
 gi|145903068|gb|AAU24258.2| DNA polymerase III clamp loader subunit, C-terminal [Bacillus
           licheniformis ATCC 14580]
 gi|317392747|gb|EFV73541.1| YqeN protein [Bacillus sp. BT1B_CT2]
          Length = 347

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 114/304 (37%), Gaps = 16/304 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79
           H V+  YG +  L+ E + + ++ +       F+  + +   ++++      E   +   
Sbjct: 16  HPVYCLYGKETHLLQETVQRIRQAVVDEETKDFNFSIFD---LEEDALDLAVEDAETFPF 72

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
             ++++++ +N +    EKK       L  LE  I +     + ++ +   K +   +  
Sbjct: 73  MGERRLVVAKNPAFLTAEKKKDKLEHNLGVLEAYITQPAPYSVFVLLAPYEKLDERKKLT 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                    +           D I        K I  EA + L+        A   E++K
Sbjct: 133 KLLKKHAHMVEAKELTAKETADFIAGLAKSEGKQIEPEAAEELVLLCHASLSAIAQEVKK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS+Y  +   IT + V+ ++       I E+IN  +  K   A+ +    L        +
Sbjct: 193 LSTYTGDRGEITIEDVRKLVARGLEQNIFELINKVVNRKRTEALQIFYDLLKQNEEPIKM 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +F+LL +     +      ++I    +  + P +  +  E  R++++  +R  +
Sbjct: 253 MALIANQFRLLMQTKYFSD-QGYGQKQIASNLK--VHPFRVKLAIEQARLFSEQELRNII 309

Query: 311 HKID 314
            ++ 
Sbjct: 310 EQLA 313


>gi|261405577|ref|YP_003241818.1| DNA polymerase III subunit delta [Paenibacillus sp. Y412MC10]
 gi|261282040|gb|ACX64011.1| DNA polymerase III, delta subunit [Paenibacillus sp. Y412MC10]
          Length = 339

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 114/301 (37%), Gaps = 14/301 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YGS+K  + E     +  +       F+LV ++  E+   I T   E  +     +
Sbjct: 18  VYLLYGSEKFQMKEFAEFLEAQLIPKEDRDFALVHMDLGEV--PIQTVVEEAETVPFMVQ 75

Query: 83  KKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           KK+I + + +      D          L + +       +I+    + K +   + +   
Sbjct: 76  KKLIFVRDTAFFTAAKDNGKVDHRPEALLDYLTDPADYSVIVFMVGQEKLDERKKVVKAV 135

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             S +A+S  P     L+  +++ +  G  ++   A + L+ N G    A   E++KL  
Sbjct: 136 KKSGVALSFMPLGGDELLRWVDKQVKKGGCTLRAGAAEALVRNAGTSLQALSGEIEKLCL 195

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y   D  I    V  ++  +    +  ++      ++  A+ +    L  +     +   
Sbjct: 196 YAGADGAIDVATVDMLVARSTEQNVFALVEDIANLRLDKALGIYYELLKQREEPIKIAAL 255

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
             ++F+++ ++  +    + S ++I  +    + P    I  E  R +    +   L+ +
Sbjct: 256 ITRQFRIILQVKTLS-TQSYSQQQIASQIG--VHPYAVKIAGEQARKFQTARLEGILNHL 312

Query: 314 D 314
            
Sbjct: 313 A 313


>gi|332637226|ref|ZP_08416089.1| DNA polymerase III subunit delta [Weissella cibaria KACC 11862]
          Length = 340

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 117/299 (39%), Gaps = 22/299 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80
            +++  G+D+ L+    +Q +        D    + L   ++++       ++  S   F
Sbjct: 19  PIYLIQGTDQYLL----DQVRSAFVSLIPDEDRTLNLAQFDMRETPLGVAVDDARSVPFF 74

Query: 81  SKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             +++++I++          +  +  ++ L           +++I +   K ++  +K+ 
Sbjct: 75  GDRRVVMIDDAYFLTGENPRTKVEHHVEDLIAYAEHPEPQTVLVIFAPYEKLDSR-KKVV 133

Query: 132 EKFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +      A   + D  +  +  +I + L      +S  A Q+L+           +EL K
Sbjct: 134 KLLKEQAAYLAFGDLTEKDVRSMITDKLRQNGFEMSGPAIQLLVRLTNMSLTQIMSELDK 193

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  +   I EQ V  ++  T    I ++INA +  K+  A+ L    +        L
Sbjct: 194 LMLYAYDTKQIDEQAVDALVTRTLSENIFDLINALLNRKLTRAVELYHELIEGGEAPLRL 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
               L +F+LL ++    +    + + +       + P +  + ++++R ++   + + 
Sbjct: 254 HAAILGQFRLLLQVKSATQSEAGTAKML------KVNPYRVKLARQTVRRFSYPALAKA 306


>gi|302333263|gb|ADL23456.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 324

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 112/299 (37%), Gaps = 18/299 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +    +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKNHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + +
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDEL 292


>gi|304385133|ref|ZP_07367479.1| DNA-directed DNA polymerase III delta subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329327|gb|EFL96547.1| DNA-directed DNA polymerase III delta subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 339

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 124/324 (38%), Gaps = 13/324 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G D   I     +    +        ++   +      ++    ++  S+  F 
Sbjct: 17  PIYLIEGPD-NYIQNAAKKILTALIPEDQQVMNVGTYDLE--NTDLGLLLDDAQSSPFFG 73

Query: 82  KKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
             ++++  N   L+ EK      LD L   + +     I++  +   K +   + + +  
Sbjct: 74  DYRLVIANNPVFLTGEKTKVKFNLDGLINYLKQPEPTTILVFAAKYEKLDGRKKIVKDLK 133

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                I   P  +     LI++ +   Q  I+  A + L+   G +     NEL+KL+ Y
Sbjct: 134 KQATVIDANPPKEADTRQLIQQFVNERQIQIASPAVEELILRTGNNLAQVINELEKLTVY 193

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   I  + V+ ++  +    + ++I   ++G +  +I      L ++     +    
Sbjct: 194 AADSKHIDLEAVQKLVPKSLTQNVFDLIKVLMKGDVRQSIADYSVLLLNQEQPLRINAAL 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL ++ I+ E    S  K+ Q+ +    P +  +  +++R ++   ++     + 
Sbjct: 254 VSQFRLLLQVKILTER-GFSQGKLAQELKA--HPYRIKLAMQAVRQFDMASLKRAFLGLL 310

Query: 315 HRIHLARKKKYLEKNIIFQTILYI 338
                 +  +   + +    ++ I
Sbjct: 311 DLEEQLKTTQRPPQELFELFLVKI 334


>gi|156743135|ref|YP_001433264.1| DNA polymerase III subunit delta [Roseiflexus castenholzii DSM
           13941]
 gi|156234463|gb|ABU59246.1| DNA polymerase III, delta subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 354

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 114/308 (37%), Gaps = 19/308 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79
           +F+ YG D+    E +   K  +      P  +  LN   +    +T  +      +   
Sbjct: 41  LFLVYGPDEYGRSEALAALKARV------PAEVADLNITTLDGRRTTLSDIVAACEAMPF 94

Query: 80  FSKKKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFT 135
            + ++++++++L   +K     D +   +        ++ ++S+E  K ++L    +K  
Sbjct: 95  LADRRLVIVDDLLKHQKAGKDRDDVRAYLEHVPDACDLVFVESDEFDKRSSLFTFLKKHA 154

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            V    C P     L+  + +       ++ ++A Q L    G D      EL KL+++ 
Sbjct: 155 EVR--ECVPREGADLLRWLSDRAKGLGVTLERDAAQRLTLLAGNDSRLLVTELTKLATFV 212

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT + V  ++ D     +   I+     +   A+      L     +  +L    
Sbjct: 213 GRRGRITVREVDLLVADRQEQNLFSFIDELSARRRSAALTALRRLLDDGQAAQYILFMMA 272

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES--LRIWNKNLVRETLHKI 313
           ++ ++L  +        +  + I  +  +    +++  L+++      +   +   L ++
Sbjct: 273 RQVRILMGVR-DLAAQRLRPDDIANRLGQKPFVVRK-ALEQAHGFSDADLQRLHRRLLEL 330

Query: 314 DHRIHLAR 321
           DH     R
Sbjct: 331 DHASKTGR 338


>gi|270291420|ref|ZP_06197642.1| DNA polymerase III, delta subunit [Pediococcus acidilactici 7_4]
 gi|270280266|gb|EFA26102.1| DNA polymerase III, delta subunit [Pediococcus acidilactici 7_4]
          Length = 339

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 123/314 (39%), Gaps = 16/314 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G D   I     +    +        ++   +      ++    ++  S+  F 
Sbjct: 17  PIYLIEGPD-NYIQNAAKKILTALIPEDQQVMNVGTYDLE--NTDLGLLLDDAQSSPFFG 73

Query: 82  KKKIILIEN---LSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
             ++++  N   L+ EK      LD L   + +     I++  +   K +   + + +  
Sbjct: 74  DYRLVIANNPVFLTGEKTKVKFNLDGLINYLKQPEPTTILVFAAKYEKLDGRKKIVKDLK 133

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                I   P  +     LI++ +   Q  I+  A + L+   G +     NEL+KL+ Y
Sbjct: 134 KQATVIDANPPKEADTRQLIQQFVNERQIQIASPAVEELILRTGNNLAQVINELEKLTVY 193

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   I  + V+ ++  +    + ++I   ++G +  +I      L ++     +    
Sbjct: 194 AADSKHIDLEAVQKLVPKSLTQNVFDLIKVLMKGDVRQSIADYSVLLLNQEQPLRINAAL 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311
           + +F+LL ++ I+ E    S  K+ Q+ +    P +  +  +++R ++   ++     L 
Sbjct: 254 VSQFRLLLQVKILTER-GFSQGKLAQELKA--HPYRIKLAMQAVRQFDMASLKRAFLGLL 310

Query: 312 KIDHRIHLARKKKY 325
            ++ ++   ++   
Sbjct: 311 DLEEQLKTTQRPPQ 324


>gi|331701119|ref|YP_004398078.1| DNA polymerase III subunit delta [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128462|gb|AEB73015.1| DNA polymerase III, delta subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 341

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 122/318 (38%), Gaps = 19/318 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G  + L   + + F K I        ++   +  +    IS    +  S   F 
Sbjct: 17  PVYLILGDQEYLAGRIKDAFVK-IIPDNERSMNIGNYDMEDTT--ISAAVEDAISVPFFG 73

Query: 82  KKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++I            S   + +D   E +     + +++I +   ++     + K 
Sbjct: 74  ERRLVMINRPYFLTGMRTKSKLDQNIDDFLEYLKHPEESTVMVIFAPYDKLDSRKKVTKA 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + + I    +N+  +  L+ + +      I  +A   ++   GG   A  ++L K
Sbjct: 134 LKKVATTIEIGNLRENE--IKKLVTDKIAAAGFKIDHDALDRMVELTGGKLTAMMSDLPK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  +  +I    V  ++  +    + +++N+ +      ++ +    +        +
Sbjct: 192 LILYNNDTKVIDLASVNGLVSKSMEQNVFDLVNSVLAKNPKQSMDIYHQLILENDEPIRI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               +Q+F+LL ++ +I +    S   +    +  + P +  +  +++R +N + +RE  
Sbjct: 252 NAVLIQQFRLLLQV-MILQKHGYSQGNLASTLK--VHPYRVKLAMQTIRKFNYDQLREAY 308

Query: 311 HKIDHRIHLARKKKYLEK 328
             +       +  +   +
Sbjct: 309 IGLVDTERQMKSTQRPPE 326


>gi|329924032|ref|ZP_08279295.1| DNA polymerase III, delta subunit [Paenibacillus sp. HGF5]
 gi|328940871|gb|EGG37179.1| DNA polymerase III, delta subunit [Paenibacillus sp. HGF5]
          Length = 339

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 114/301 (37%), Gaps = 14/301 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YGS+K  + E     K  +       F+LV ++  E+   I T   E  +     +
Sbjct: 18  VYLLYGSEKFQMKEFAEFLKAQLIPKEDRDFALVHMDLGEV--PIQTVVEEAETVPFMVQ 75

Query: 83  KKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           KK+I + + +      D          L + +       +I+    + K +   + +   
Sbjct: 76  KKLIFVRDTAFFTAAKDNGKVDHRPEALLDYLTDPADYSVIVFMVGQEKLDERKKVVKAV 135

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             S +A+S  P     L+  +++ +  G  ++   A + L+ N G    +   E++KL  
Sbjct: 136 KKSGVALSFMPLGGDELLRWVDKQVKKGGCTLRAGAAEALVRNAGTSLQSLSGEIEKLCL 195

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y   D  I    V  ++  +    +  ++      ++  A+ +    L  +     +   
Sbjct: 196 YAGADGAIDVATVDMLVARSTEQNVFALVEDIANLRLDKALGIYYELLKQREEPIKIAAL 255

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
             ++F+++ ++  +    + S ++I  +    + P    I  E  R +    +   L+ +
Sbjct: 256 ITRQFRIILQVKTLS-TQSYSQQQIASQIG--VHPYAVKIAGEQARKFQTARLEGILNHL 312

Query: 314 D 314
            
Sbjct: 313 A 313


>gi|295092999|emb|CBK82090.1| DNA polymerase III, delta subunit [Coprococcus sp. ART55/1]
          Length = 339

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 89/256 (34%), Gaps = 7/256 (2%)

Query: 22  FVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            +++ YG ++ L+                 D  + +      I  + S      N    F
Sbjct: 27  KIYLLYGEERYLVNQYRDKLLSALT--DKDDNLNFMKFAGNGI--DTSELLAFCNEMPFF 82

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           + ++++L+EN    K   +   + +++     + I    ++     L K  +K    L  
Sbjct: 83  ADRRVVLVENSGLFKSSNEDFAKKLVEIEDTSVAIFVEMDVDTRYKLFKAVDKNGEALDF 142

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +    ++  ++  ++        + +  A   ++     D    +NE+ K+ SY  +   
Sbjct: 143 A--TPDEKMMVTWVKSLFRADGVATTDTAIYKIIEAANMDMNCIKNEVDKMISYAGDTKQ 200

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           ++E  V  +        + ++I+  I  +   A  +    L +K  +  +    +++F  
Sbjct: 201 VSEHDVDLLCSQDAESKVYQMIDFIIAKQKEKACSMYHDLLENKESAIMINACIMRQFNK 260

Query: 261 LEKIHIIKECSNISFE 276
           L  + +          
Sbjct: 261 LLLVKMALSDGAQDAS 276


>gi|317968482|ref|ZP_07969872.1| DNA polymerase III subunit delta [Synechococcus sp. CB0205]
          Length = 326

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 111/328 (33%), Gaps = 16/328 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D+      +    KN         +L  L+  +  +       E  +     
Sbjct: 2   PIHLIWGDDEAARSRAVEALVKNQVDPSWQSINLSRLDGNDTNQAAQAL-EEARTAPFGG 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNH-IIIIKS----NEIKKNNTLRKIA- 131
             ++I+++           + + LE  +        ++++ +      +K    L+K+  
Sbjct: 61  GDRVIVLQRSPFCNQCPADLAEQLEASLNLVAEKCHLVLVNAAKPDGRLKTTKALQKLVK 120

Query: 132 --EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             E       +    D    +  L++ +       +  +A Q L   +G D     +EL+
Sbjct: 121 SGEAQERSFQLPAIWDGSGQVE-LVQRTAQELGLKLQPDAAQALSDAIGSDSARLASELE 179

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KLS Y      IT Q V  +I       ++ + +A + G+   A+ L D  LA+  P+  
Sbjct: 180 KLSLYAGAGQAITSQAVDALIGSQATNALQ-VGDALLAGQPAAAVALVDVLLAANEPALR 238

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           ++     + +    + ++ +        I +       P +  ++++ +R          
Sbjct: 239 IVATLCGQIRGWLWVSLLDQQGENDVNAIAKAAGIG-NPKRIYVMRKQIRGRKPERFLAL 297

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337
           L ++       ++            +L 
Sbjct: 298 LSQLLQVEASLKRGADPADAFRDGFLLT 325


>gi|299535734|ref|ZP_07049055.1| hypothetical protein BFZC1_06913 [Lysinibacillus fusiformis ZC1]
 gi|298728934|gb|EFI69488.1| hypothetical protein BFZC1_06913 [Lysinibacillus fusiformis ZC1]
          Length = 336

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 129/330 (39%), Gaps = 28/330 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80
            V++  G +   I E I + K+ +          + +   ++++       +E ++   F
Sbjct: 16  PVYLLVGEESYFIDETIKRLKEAMGPEED-----LEMTTFDLEEVPVDVVMDEADTIPFF 70

Query: 81  SKKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
           S++K+I+ +N S  K            +  LE  +       + +  +   ++ +   + 
Sbjct: 71  SERKLIIAKNASFLKATEKGKEKIDHDVKRLETWLSNPSDFSVTVFIAPYEKLDERKKVT 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+       L +      +  L   I+  +     SI+++A ++L+  +G + +  + E+
Sbjct: 131 KM--MKEHALFVQAETPKEQDLAIWIQGIVKTQGNSITQDAIELLVTMVGANMLQLQMEI 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL+ Y  +   IT   V+D++  T      +++NA +      A+ +    L  K    
Sbjct: 189 DKLTLYLSDGGEITTSLVEDLVAKTLEQDAFKMLNAYLANDSVGALSIYHDLLRQKQEPI 248

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L+       + +  +  +        ++I +  +  I P +  ++ E     ++  +  
Sbjct: 249 MLVGLLASNVRTMSNVFYLL-KKGYHPQQIAKNLK--IHPYRVKLMIEQRHRPSEENLLR 305

Query: 309 TLHKIDHRIHLAR-----KKKYLEKNIIFQ 333
            L+++       +     +++YLE  ++ Q
Sbjct: 306 ALYQLAEVDLQLKSSGGNRERYLELFLLRQ 335


>gi|154686816|ref|YP_001421977.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens FZB42]
 gi|154352667|gb|ABS74746.1| YqeN [Bacillus amyloliquefaciens FZB42]
          Length = 340

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 120/306 (39%), Gaps = 20/306 (6%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
             V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  RSVYCLYGKETYLLQETVSRIRQAVVDEETKDFNLSVFD---LEEDPLDQAVTDAETFPF 71

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             +K++++++N S    EKK          LE  + +     + +I +   ++ +   L 
Sbjct: 72  MGEKRLVIVKNPSFLTGEKKKEKIEHNTAALETYLKEPAPYTVFVIVAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K        L I     N     D          K I  EA + L+    G   +   E+
Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKMIDTEAAEHLVLLANGHLSSIYQEI 189

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           QKLS+Y  +   IT + V++++  +    I E+IN  +  K   ++ +    L       
Sbjct: 190 QKLSAYTGDRHEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     +F+L+ +            ++I    +  + P +  +  +  R++++  +R 
Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306

Query: 309 TLHKID 314
            + ++ 
Sbjct: 307 IIERLA 312


>gi|313623725|gb|EFR93871.1| DNA polymerase III, delta subunit [Listeria innocua FSL J1-023]
          Length = 296

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 103/264 (39%), Gaps = 12/264 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIK 117
           I     E  S   F  K++++  N   L+TEK           LE  + + +   ++   
Sbjct: 11  IEVVIQEAESMPFFGDKRLVMANNPIFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFV 70

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +   K +   +       +   I     N+  L   +E  L      +S+EA   L+   
Sbjct: 71  ARVEKLDERKKLTKLLKKTATVIEAKRPNENELKKWLEAKLNENNMRMSQEAITRLIELT 130

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G    + NELQKL  YC +   IT Q V+ ++  +    I  +++  I   I  A+ + 
Sbjct: 131 SGQLTTAMNELQKLMLYCFDTKEITVQDVESLVVRSLEQNIFLLLDKMIAMDIGGALRIY 190

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              L  K     +L     +F+LL ++ ++ E    S ++   K +  + P +  +  + 
Sbjct: 191 YDLLKQKEEPIKILALISSQFRLLNQLKLL-EQQGYSQQQAATKLK--VHPFRVKLASKQ 247

Query: 298 LRIWNKNLVRETLHKIDHRIHLAR 321
            + +++  + + L ++       +
Sbjct: 248 AKNFSELQLNQALKRLAEIDLEMK 271


>gi|308174344|ref|YP_003921049.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens DSM 7]
 gi|307607208|emb|CBI43579.1| DNA polymerase III, delta subunit [Bacillus amyloliquefaciens DSM
           7]
          Length = 340

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 121/306 (39%), Gaps = 20/306 (6%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
             V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  RSVYCLYGKETYLLQETVSRIRQAVVDEETKDFNLSVFD---LEEDPLDQAITDAETFPF 71

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             +K++++++N S    EKK          LE  + +     + +I +   ++ +   L 
Sbjct: 72  MGEKRLVIVKNPSFLTGEKKKEKIEHNTSALETYLKEPAPYTVFVIVAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K        L I     N     D          K++  EA + L+    G   +   E+
Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKTMDTEAAEHLVLLANGHLSSIYQEI 189

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           QKLS+Y  +   IT + V++++  +    I E+IN  +  K   ++ +    L       
Sbjct: 190 QKLSAYTGDRHEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     +F+L+ +            ++I    +  + P +  +  +  R++++  +R 
Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306

Query: 309 TLHKID 314
            + ++ 
Sbjct: 307 IIERLA 312


>gi|308069977|ref|YP_003871582.1| hypothetical protein PPE_03226 [Paenibacillus polymyxa E681]
 gi|305859256|gb|ADM71044.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 343

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 116/305 (38%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YGS+K  + + +   K+ +    H  F+++  +  E    I     E  +     
Sbjct: 17  PVYLLYGSEKYQMKQFVEMLKEKVVEEEHRDFAIIPYDLTET--PIEVVVEEAETAPFLV 74

Query: 82  KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            KK+I++ + S              L+ L   +       +I+  +++ ++ +   + K 
Sbjct: 75  PKKLIIVRDTSVFAAGKDSGKIEHRLETLLTYMDNPTDYSVIVFTVQAEKLDERKKIVKK 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +   SV+A +    +   L+  I +     +  ++  A + L+   G    +   E+ K
Sbjct: 135 LKSDASVIAFAPMGGD--DLIAWIHKRAGEREVQLAAGAAESLIQFTGTGLQSLAAEIDK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y      I+   ++ ++       +  ++      ++  A+ +    L  K     +
Sbjct: 193 LCLYAGAQGTISSADIESLVPRNTEQNVFAMVEDLANLRLDKALSIFYELLKQKEEPIKI 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                ++F     +  +KE +  S+ +    ++ ++ P    +  +  R +    +R+ L
Sbjct: 253 AALITRQF---RIMLQVKELAGQSYSQQQIASQLSLHPYGVKVAGDQARRFRPEQLRQLL 309

Query: 311 HKIDH 315
           +++  
Sbjct: 310 YELGE 314


>gi|328554291|gb|AEB24783.1| DNA polymerase III subunit delta [Bacillus amyloliquefaciens TA208]
 gi|328912688|gb|AEB64284.1| DNA polymerase III, delta subunit [Bacillus amyloliquefaciens LL3]
          Length = 340

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 122/306 (39%), Gaps = 20/306 (6%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
             V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  RSVYCLYGKETYLLQETVSRIRQAVVDEGTKDFNLSVFD---LEEDPLDQAITDAETFPF 71

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             +K++++++N S    EKK          LE  + +     + +I +   ++ +   L 
Sbjct: 72  MGEKRLVIVKNPSFLTGEKKKEKIEHNTGALETYLTEPAPYTVFVIVAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K        L I     N     D          K+I  EA + L+  + G   +   E+
Sbjct: 132 KAL--KQKALMIEAKELNAKETTDFTINLAKSENKTIDTEAAEHLVLLVNGHLSSIYQEI 189

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           QKL++Y  +   IT + V++++  +    I E+IN  +  K   ++ +    L       
Sbjct: 190 QKLTAYTGDRQEITLEDVRELVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPI 249

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     +F+L+ +            ++I    +  + P +  +  +  R++++  +R 
Sbjct: 250 KIMALIANQFRLIMQTKY-FAGQGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELRR 306

Query: 309 TLHKID 314
            + K+ 
Sbjct: 307 IIEKLA 312


>gi|114319563|ref|YP_741246.1| DNA polymerase III, delta subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225957|gb|ABI55756.1| DNA polymerase III, delta subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 338

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 107/316 (33%), Gaps = 19/316 (6%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I+ H   +   ++L      ++  G +  LI E ++  +       +D   ++ +    
Sbjct: 2   QIKPHDIARHLERDLL---PAYLVAGDEPLLIQESVDAIRATARAQGYDEREVLEVEPGF 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
                    +   + SLFS++++I +   +     +    ++    +   + ++++ S  
Sbjct: 59  ---EWERLHHAAGNLSLFSERRLIELRLPDGKPGSQGAKAIQGYCRQAPPDTLLLVISGR 115

Query: 121 IK---KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +    + +   K  E       + C+P         +   L       S +A  +L+A  
Sbjct: 116 LPGKTRQSAWVKALEGL--GAMVYCWPVGGHEFPGWLRRRLQAHGLQPSDDAVDLLVARS 173

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  E++KL+        +        + D+    + ++ +A + G+   A  + 
Sbjct: 174 EGNLLAANQEIEKLAL-LHGSGPLDGDTAAAAVADSARYELNDLGDAMLAGERGRAYHVL 232

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-IIPMKRNILQE 296
                    +  +L    +  + +  +     C      +  +    + +   +   +  
Sbjct: 233 QGLREEGTAAPLVLWALARDLRAVADLR----CKRPPRPEWERFLRAHGVFKPRVPRVVG 288

Query: 297 SLRIWNKNLVRETLHK 312
           + R   +      L +
Sbjct: 289 AARRGRREDWLHLLAR 304


>gi|87119375|ref|ZP_01075273.1| DNA polymerase III subunit delta [Marinomonas sp. MED121]
 gi|86165766|gb|EAQ67033.1| DNA polymerase III subunit delta [Marinomonas sp. MED121]
          Length = 345

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 127/311 (40%), Gaps = 12/311 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I++ +  Q   K L   H ++I  G +  LI E  +  +K +     D     V +A  
Sbjct: 2   KIKAEQLEQTINKEL---HPIYIISGDEPLLIQEASDSIRKLLPSKGIDERLRFVADAQF 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
              +      E  + SLFS +++  I+     +K    L ++  +   ++II++   ++ 
Sbjct: 59  ---DWQEVLQENQALSLFSSQRLFDIQIDKMSEKHTKALTQLGNELTSDNIILLTLPKLD 115

Query: 123 KNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                 K   K  +  + +  +P     L   +++       S++++A  ++     G+ 
Sbjct: 116 SRTQKTKWFTKLESQGVFVQIWPVEANRLGQWLQKRASAIDLSLTRDAAALICERNEGNL 175

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +A   EL+KL         I EQ + D + D+    I ++ +  + GK+  ++       
Sbjct: 176 LALSQELEKLVLIQGPGSRIDEQTIADSVSDSSRYSIYDLSDRILMGKVKESLHCLQQLG 235

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           A  +  + +L    ++ Q L+K+  ++  +++S  +  QK    I   +    + +L   
Sbjct: 236 AEGVDHNIMLWLLNREIQTLDKL--VQASASMSIRQACQKQR--IWDKRIPFYESALSRH 291

Query: 302 NKNLVRETLHK 312
           N N +   + +
Sbjct: 292 NINTLNY-MQR 301


>gi|288555668|ref|YP_003427603.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4]
 gi|288546828|gb|ADC50711.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 123/325 (37%), Gaps = 23/325 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+  +G+ + LI +   Q    +        +++  +  E    I     E  +     
Sbjct: 17  PVYFIHGTQQFLIEDFSQQVLDQVVGQDGSDMNVITYSFSET--PIELAVQEAETLPFLG 74

Query: 82  KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             K++++++                +D L + I        +I+ +   ++ +   + K 
Sbjct: 75  ANKVVIVKDFQAVTSQKQDVKIEHDIDVLIKYIENPSPESTLILVAPYEKLDERKKITKR 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K      I   P +   +   IEE        I+KEA++ L+  LG D + + +EL+K
Sbjct: 135 LKKE--ATVIEALPFDDRMMKQWIEEQTASHHIQITKEAQERLVERLGFDLLLAASELKK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+ Y  E   IT + V  ++  T    +  +I+  ++ ++  A+++    L  K     +
Sbjct: 193 LALYVGEGGEITPREVDLLVARTLEQDVFALIDFAVKKRLDGALVIYHDLLKQKEDPLKI 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISF-EKIIQKTEKNIIPMKRNILQESLRIW---NKNLV 306
           L    ++F    +I+   +  +     +     +  + P    +  + +  +   +   +
Sbjct: 253 LALLARQF----RIYYQVKGLSKQAYSQKQIAAQLKLHPYAVKLASQKVSQFEERSLLTL 308

Query: 307 RETLHKIDHRIHLARKKKYLEKNII 331
            E     D+ I   + +K L   ++
Sbjct: 309 LEAAADTDYAIKSGKMEKVLAVELL 333


>gi|304395662|ref|ZP_07377545.1| DNA polymerase III, delta subunit [Pantoea sp. aB]
 gi|304356956|gb|EFM21320.1| DNA polymerase III, delta subunit [Pantoea sp. aB]
          Length = 343

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 112/302 (37%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  +   +    D      L+A   Q +  + +    S SLF+++
Sbjct: 21  YLLAGNEPLLLQESADAIRAAATTQGFDEHFSFTLDA---QTDWESLFVSCQSLSLFAQR 77

Query: 84  KI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +   +          + + L ++      + ++I +  ++ K        +    S + +
Sbjct: 78  QTMTLQFPENGPNAAMAEQLVKLSQLLHADILLICRMPKLTKAQENSAWFKALAASAVVV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C    +  L   +       + S+   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 PCQTPEQAQLPRWVVNRAKALKLSVDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V++ + D         ++A + GK   A+ +       +     LL    +   L
Sbjct: 197 LTLPRVEEAVSDAAHFTPFHWVDALLAGKSRRALHILHQLEKEESEVVILLRTLQR--DL 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +H+ +  +      ++ +    I   +R +  ++L+  +   ++  +H +       
Sbjct: 255 LTLLHLQRHQARQPLRTLMDQQR--IWQNRRALFTDALQRLDATRLQRAIHLLSQIEITL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|71906182|ref|YP_283769.1| DNA polymerase III subunit delta [Dechloromonas aromatica RCB]
 gi|71845803|gb|AAZ45299.1| DNA polymerase III, delta subunit [Dechloromonas aromatica RCB]
          Length = 335

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 117/321 (36%), Gaps = 13/321 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ YG D  L+ E  +  +       +    ++ +       +  T  +   + SLF
Sbjct: 17  RPLYVLYGDDPLLVIEAADAIRAKSRQQGYSEREVLTVLPQF---DWGTLLSAGGNMSLF 73

Query: 81  SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137
             KK+I   I      K+    L++       +++++I   E+              +  
Sbjct: 74  GDKKLIDLRIPTGKPGKEGSAALQQWCQHLSMDNMLLITLPELDWREEKAVWFTALVNAG 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +AI         L   I   L   Q+S   E+ + +   + G+ +A+  E+QKL      
Sbjct: 134 VAIKLMAPPLAELPGWIAGRLRRQQQSADLESLKFIAERVEGNLLAAHQEIQKLGL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ++   +++ + +     I+ +  A + G I       D  +        +L    ++
Sbjct: 193 TGQLSMAQIREAVLNVARYDIDGLREALLAGDIGRLTRTLDGLMQEGEAPPLVLWAMSEE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + L  I    +      + +++  +  +   +   ++++L+  + + +      + H  
Sbjct: 253 IRALTIIRAGMDA-GKPMDMLLKDAK--VWGPRATPVKKALQRLSTSALEAA---LQHAG 306

Query: 318 HLARKKKYLEKNIIFQTILYI 338
            + R  K + +  I++  L +
Sbjct: 307 KIDRLAKGIGQGNIWEEFLRL 327


>gi|321312040|ref|YP_004204327.1| DNA polymerase III subunit delta [Bacillus subtilis BSn5]
 gi|320018314|gb|ADV93300.1| DNA polymerase III subunit delta [Bacillus subtilis BSn5]
          Length = 347

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
           H V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71

Query: 80  FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             ++++++++N   L+ EKK       +  LE  I       + ++ +   ++ +   L 
Sbjct: 72  MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183
           K  +K   ++           L                QK+I  EA + L+  + G   +
Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E+QKL ++  +   IT   VK ++  +    I E+IN  +  K   ++ +    L  
Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++     +F+L+ +     E      ++I    +  + P +  +  +  R++++
Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301

Query: 304 NLVRETLHKID 314
             +R  + ++ 
Sbjct: 302 EELRSIIEQLA 312


>gi|300172815|ref|YP_003771980.1| DNA polymerase III subunit delta [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887193|emb|CBL91161.1| DNA polymerase III, delta subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 333

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 128/307 (41%), Gaps = 21/307 (6%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +Q+  KN  L++F ++  G++  LI     Q  + +        +    + ++   +   
Sbjct: 6   LQQQIKNKALANF-YVVTGNEDVLI-YRAQQAFRQLIQLADRDMNYSQFDLIDQALDE-- 61

Query: 70  FWNEINSTSLFSKKKIILIEN----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIK 122
             N+  S   F  +++++++N     +  K  +   + L +++ K I  +I++   N++K
Sbjct: 62  VINDAMSMPFFGDRRVVVVQNPEFLTAKGKISVQNQEQLVKLLEKPIAENIVVFFINDLK 121

Query: 123 --KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
             K   + K   K+   + +     N+      I + L      I ++A Q L+      
Sbjct: 122 IDKRKKITKTLLKYAENIELP--ALNESQSRQAITQELQQRAYKIEQDALQELILRTNAH 179

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A +NEL KL +Y      I+ + V  ++  T    I ++++A +  +   A+++    
Sbjct: 180 YTAMKNELPKLIAYATHTKNISLEAVTTLVPKTLTATIFDLVDAVMTRQSKKALLIYRDL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L +  P+  +      +F+LL +I  +K       +++       I P +  +  + L+ 
Sbjct: 240 LQNGEPALRINAVLTGQFRLLLQIAGLKGTEQDMSKQL------GIHPYRIKLAHQMLKK 293

Query: 301 WNKNLVR 307
           +    +R
Sbjct: 294 YLLASLR 300


>gi|168705017|ref|ZP_02737294.1| DNA polymerase III subunit delta [Gemmata obscuriglobus UQM 2246]
          Length = 339

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 98/301 (32%), Gaps = 7/301 (2%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +Q  +      H V+   G +  L      +            F++       +  + + 
Sbjct: 4   LQFLSAKDAKRHPVYALVGDEDFLKRHARERIISIAIGDEDPSFAVSASGGDRLDFSTAR 63

Query: 70  FWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
             NE+ +    +  ++++++       +    LE    K     ++++      +N  L 
Sbjct: 64  --NELETLPFLAPCRVLIVDAADKFVTENRQALEAYAAKPSAVGVLVLDVKTFPENTKLA 121

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEE-SLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           K          I C    +  +     E +    +K ++ EA ++L+  +G        E
Sbjct: 122 KAL---PDGAKIVCKAPPEYKIGAWCVEWAKTAHKKKLATEAAELLVERVGTSMGLLDQE 178

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L KL++      +I+   V  ++  +    +  I++A   GK   A+ +     A     
Sbjct: 179 LGKLANAVGAKPVISADDVDTLVGRSKAADVFRIMDAIGDGKPAQALSILQELFAEGEDP 238

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A++     + + L  +  +     +     +           R   ++ L+      + 
Sbjct: 239 MAVIGPLTAQLRKLATVGRLMVVEKLPMGSAMDAANVPKWEKARVNCEKQLKHLGGPRLL 298

Query: 308 E 308
           +
Sbjct: 299 K 299


>gi|326201894|ref|ZP_08191764.1| DNA polymerase III, delta subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325987689|gb|EGD48515.1| DNA polymerase III, delta subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 338

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 118/322 (36%), Gaps = 17/322 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG +  LI   +N     I        + + L     +K+ +T      +  +F 
Sbjct: 17  NVYLFYGQEDYLIKYYMNAIGNLIVDEETKDLNYIYLEG---KKDTNTLIENCETMPVFC 73

Query: 82  KKKIILIEN------------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            KK+++  N             S +K   + L + I        +I    E+ K   L  
Sbjct: 74  DKKLVISRNSGYFKSKKGGGEGSDKKSENNKLADYIENMPPYTCLIFVEQEVDKRIKLVN 133

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +K   V+    Y      L+  + +     +K+I   A   ++ N     +   NE+ 
Sbjct: 134 TIKKKGLVVEFD-YQKPA-DLVKWVVKVFKSHKKTIDTIAASYIVENSEYSMVELLNEID 191

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ ++  E   I+   VK +   T    I ++ +A  +G I  A+ML +     K P   
Sbjct: 192 KIVNFTGEIQNISIDDVKSVCTTTIKSRIFDLTDAVAEGNISKALMLLNDMAFLKEPMQK 251

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +++  +++ +++ ++ ++K+          Q      +  K   L  ++ I         
Sbjct: 252 IMYMIVRQIRMVYRMKLLKQQGMREDAAAKQMGLTPFVASKVLGLSRNMEIGVLEKAMYY 311

Query: 310 LHKIDHRIHLARKKKYLEKNII 331
             ++D  +   +        ++
Sbjct: 312 SLELDESVKTGKMTDRTAIELL 333


>gi|330867183|gb|EGH01892.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330871071|gb|EGH05780.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 256

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 94/230 (40%), Gaps = 8/230 (3%)

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---ISCYPDNKIHLM 151
            K    L E   +   + +++I   ++  +    K  +          +  +P +   L 
Sbjct: 1   DKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQTQFVQIWPVDVGQLP 60

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             I + L     + +++A +++ A + G+ +A+  E++KL     E+  IT + V+  + 
Sbjct: 61  QWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVA 119

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           D+    +  + +A + G+  +A+ + +      + +  +L    ++ + L  +       
Sbjct: 120 DSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQ 178

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318
            +  +K+       I   ++ ++ ++L+  +     + L    +ID +I 
Sbjct: 179 GVPLDKVFSSARPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 228


>gi|327439589|dbj|BAK15954.1| DNA polymerase III, delta subunit [Solibacillus silvestris StLB046]
          Length = 336

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 123/312 (39%), Gaps = 21/312 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E I Q K  +           ++     ++ I    +E ++   FS
Sbjct: 16  PVYLLVGEESYFVDETIKQLKAALQKNE----EAEIMTFDLNEQPIDYVIDEADTIPFFS 71

Query: 82  KKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129
           ++K+I+ +N S  K            L+ LE  +       I +  +   ++ +   + K
Sbjct: 72  ERKLIIAKNASFLKATEKGKEKIDHDLNRLESWLQHPTDTAITVFIAPYEKLDERKKVTK 131

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           +  K    + I+  P N   L   ++       K+I+ EA   LL  +G + +  + E++
Sbjct: 132 LM-KEKCTVLIAETPQNN-DLNVWVKNEAQQHGKAITDEAVGKLLEMVGPNMLQLQMEIE 189

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K++ Y  ED  IT + V+D++  T      +++NA ++     A+ +    L  K     
Sbjct: 190 KMALYLGEDHEITRELVEDLVAKTLEHDAFKMLNAYLEHNQEEALKIYHDLLRQKEEPIK 249

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L+       + +  I  + +      ++I ++ +  I P +  I+       +   + + 
Sbjct: 250 LVGLLANNIRTMTNIFYL-QKKGYHQQQIAKQLK--IHPYRVQIISGQRNRPSDQRLLQA 306

Query: 310 LHKIDHRIHLAR 321
           L+ +       +
Sbjct: 307 LYSLAEVDLQLK 318


>gi|28378747|ref|NP_785639.1| DNA polymerase III subunit delta [Lactobacillus plantarum WCFS1]
 gi|308180939|ref|YP_003925067.1| DNA polymerase III subunit delta [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271584|emb|CAD64489.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus
           plantarum WCFS1]
 gi|308046430|gb|ADN98973.1| DNA polymerase III subunit delta [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 353

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 128/336 (38%), Gaps = 23/336 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I + + ++        S +V +      G +  L +Q K+  +         + + +
Sbjct: 1   MIAINAQQALKSIRNGDLASIYVIL------GTVDYLADQLKQAFTQQIPSEEQTMNVGS 54

Query: 61  LEIQKNI-STFWNEINSTSLFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNIC 110
            +++    +   ++  S   F +++++ I +        KK      L  L+    +   
Sbjct: 55  YDMETTPVAVALDDAMSAPFFGERRLVFINHPYFLTGENKKTKVDHDLASLQHYFEQPEP 114

Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           + I++  +   ++     L K  +K  + + +     ++      ++ +L   Q  I  +
Sbjct: 115 STILVFMAPYEKLDARKKLVKTLKKQATTVEV--NQVSEAETQRYVQAALDEKQIRIDAD 172

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q L+    G       +L KL  Y  +   I    V+ ++  +    + +++N  ++ 
Sbjct: 173 ALQELVNRTDGQLGLIMGQLPKLMIYAAQSQRIDLAAVQALVTKSLTQNVFDLVNDVLRY 232

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
           +  +A+ L    +A++     +    L +F+LL ++  I   +  S   +    +  + P
Sbjct: 233 QTQSAVELYHELVAAQEAPLKINAILLGQFRLLLQVK-IMARAGYSQGSLASTLK--VHP 289

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +  +  +++R +++  +R     +       +  +
Sbjct: 290 YRVKLAMQTVRHFDQAALRAAYLGLLQTEVQMKTTQ 325


>gi|220929373|ref|YP_002506282.1| DNA polymerase III subunit delta [Clostridium cellulolyticum H10]
 gi|219999701|gb|ACL76302.1| DNA polymerase III, delta subunit [Clostridium cellulolyticum H10]
          Length = 339

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 119/323 (36%), Gaps = 18/323 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG +  LI   +N     I        + + L     +K+  +      +  +FS
Sbjct: 17  NVYLFYGQEDYLIKYYMNTIANLIVNEETKDLNYIYLEG---KKDTESLIENCETMPIFS 73

Query: 82  KKKIILIEN-------------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
           +KK+++  N              S +K   + L + I        +I    E+ K   L 
Sbjct: 74  EKKLVIARNSGFFKSKKGGSEGGSDKKSGNNKLADYIENMPSYTCLIFVEQEVDKRIKLV 133

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
              +K    L +         L+  + +     +K+I   A   ++ N         NE+
Sbjct: 134 NSVKK--KGLVVEFNYQKPADLVKWVVKVFKSYKKTIDNIAASYIVENSEYSMAELLNEI 191

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            K+ ++  +   I+ + V+ +   T    I ++ +A  +G I  A+ML +   + K P  
Sbjct: 192 DKIVNFIDDKQHISLEDVQSVCTKTIKSRIFDLTDAVAEGNISKALMLLNDMASLKEPMQ 251

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +++  +++ +++ ++ ++KE          Q      +  K   L + + I        
Sbjct: 252 KIMYMIVRQIRMVYRVKLLKEQGIREDAAAKQMGLTPFVASKVLRLSKYMEIGILERAMY 311

Query: 309 TLHKIDHRIHLARKKKYLEKNII 331
              ++D  I   R        ++
Sbjct: 312 YSLELDESIKTGRMTDRTAIELL 334


>gi|16079610|ref|NP_390434.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310480|ref|ZP_03592327.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314804|ref|ZP_03596609.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319726|ref|ZP_03601020.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324004|ref|ZP_03605298.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|1730987|sp|P54459|YQEN_BACSU RecName: Full=Uncharacterized protein yqeN
 gi|1303799|dbj|BAA12455.1| YqeN [Bacillus subtilis]
 gi|2635002|emb|CAB14498.1| DNA polymerase delta subunit [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 347

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
           H V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71

Query: 80  FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             ++++++++N   L+ EKK       +  LE  I       + ++ +   ++ +   L 
Sbjct: 72  MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183
           K  +K   ++           L                QK+I  EA + L+  + G   +
Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E+QKL ++  +   IT   VK ++  +    I E+IN  +  K   ++ +    L  
Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++     +F+L+ +     E      ++I    +  + P +  +  +  R++++
Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301

Query: 304 NLVRETLHKID 314
             +R  + ++ 
Sbjct: 302 EELRLIIEQLA 312


>gi|291485004|dbj|BAI86079.1| DNA polymerase III subunit delta [Bacillus subtilis subsp. natto
           BEST195]
          Length = 347

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 30/311 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
           H V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  HPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71

Query: 80  FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             ++++++++N   L+ EKK       +  LE  I       + ++ +   ++ +   L 
Sbjct: 72  MGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183
           K  +K   ++           L                QK+I  EA + L+  + G   +
Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E+QKL ++  +   IT   VK ++  +    I E+IN  +  K   ++ +    L  
Sbjct: 185 IFQEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++     +F+L+ +     E      ++I    +  + P +  +  +  R++++
Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301

Query: 304 NLVRETLHKID 314
             +R  + ++ 
Sbjct: 302 EELRLIIEQLA 312


>gi|254556950|ref|YP_003063367.1| DNA polymerase III subunit delta [Lactobacillus plantarum JDM1]
 gi|300768265|ref|ZP_07078170.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|254045877|gb|ACT62670.1| DNA polymerase III subunit delta [Lactobacillus plantarum JDM1]
 gi|300494329|gb|EFK29492.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 353

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 128/336 (38%), Gaps = 23/336 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I + + ++        S +V +      G +  L +Q K+  +         + + +
Sbjct: 1   MIAINAQQALKSIRNGDLASIYVIL------GTVDYLADQLKQAFTQQIPSEEQTMNVGS 54

Query: 61  LEIQKNI-STFWNEINSTSLFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNIC 110
            +++    +   ++  S   F +++++ I +        KK      L  L+    +   
Sbjct: 55  YDMETTPVAVALDDAMSAPFFGERRLVFINHPYFLTGENKKTKVDHDLASLQHYFEQPEP 114

Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           + I++  +   ++     L K  +K  + + +     ++      ++ +L   Q  I  +
Sbjct: 115 STILVFMAPYEKLDARKKLVKTLKKQATTVEV--NQVSEAETQRYVQAALDEKQIRIDAD 172

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q L+    G       +L KL  Y  +   I    V+ ++  +    + +++N  ++ 
Sbjct: 173 ALQELVNRTDGQLGLIMGQLPKLMIYAAQSQRIDLAAVQALVTKSLTQNVFDLVNDVLRY 232

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
           +  +A+ L    +A++     +    L +F+LL ++  I   +  S   +    +  + P
Sbjct: 233 QTQSAVELYHELVAAQEAPLKINAILLGQFRLLLQVK-IMARAGYSQGSLASTLK--VHP 289

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +  +  +++R +++  +R     +       +  +
Sbjct: 290 YRVKLAMQTVRHFDQAALRAAYLGLLQTEVQMKTTQ 325


>gi|319943189|ref|ZP_08017472.1| DNA-directed DNA polymerase III delta subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319743731|gb|EFV96135.1| DNA-directed DNA polymerase III delta subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 356

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 113/290 (38%), Gaps = 8/290 (2%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87
           G +  L+ E  +  +        +   ++ ++A     + S       STSLF+ +++I 
Sbjct: 27  GDELLLVIEAADLVRARARKLGFEEREVLDIDARF---DRSRLVEATQSTSLFASQRLID 83

Query: 88  IE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPD 145
           +  N    +++ D L E++ +      +++ S  +++  T     E     +L +     
Sbjct: 84  LRLNTKPTRELGDALRELLPRLDDGTRVLVSSAHLERATTSTAWFEALAKQMLWVETPRI 143

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +   L   + E L   ++  +     ++     G+ +A+   +Q+L    L    +  + 
Sbjct: 144 DAGALGKWVTERLAAQKQQATPAVLALITERTEGNLLAAHQAIQRLGL-LLPPGELPAEA 202

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V +I+ D+    +  +++A + G    A+ +A    A       L        + L +I 
Sbjct: 203 VAEIVLDSARFELFGLVDAALAGDPARAVRMARSLAAEDAAMPLLCWALADAIRKLLRIQ 262

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
              +   ++  + ++     +   +  I++++LR  +   +   L ++  
Sbjct: 263 QALQIERVAPAQAMRAAG--VFGKREAIMRQALRRLDIQTLGHLLQQVAR 310


>gi|229062022|ref|ZP_04199347.1| DNA polymerase III, delta subunit [Bacillus cereus AH603]
 gi|228717174|gb|EEL68849.1| DNA polymerase III, delta subunit [Bacillus cereus AH603]
          Length = 336

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     + ++   F 
Sbjct: 15  PLYVLYGTEAYFINETIKLITTYALEEEDREFNVVTYDLEE--AYLEDVVEDAHTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K+ILI++   L+ +K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   I         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVIEANAMQVQDVQKWIVSRADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|189425169|ref|YP_001952346.1| DNA polymerase III subunit delta [Geobacter lovleyi SZ]
 gi|189421428|gb|ACD95826.1| DNA polymerase III, delta subunit [Geobacter lovleyi SZ]
          Length = 336

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 101/295 (34%), Gaps = 14/295 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V+ FYG +  L+     +  +         F+L +    + +   +   +   +  +F++
Sbjct: 18  VYFFYGEEPFLVERAGRRVMEKAVDPAMKDFNLNIYYGADCKG--TEILDTSQTLPMFAE 75

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKN-ICNHIIIIKS-NEIKKNNTLRKIA-EKFTSVL 138
           ++++++           + L   +        ++ + +  +++     RK   E      
Sbjct: 76  RRVVVVRQADKLPAATQEGLLPYLANPCPETCLLFLAAKPDLR-----RKFFSELKKQPG 130

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         L   I     +  K I     ++L   +G +     ++++K + Y    
Sbjct: 131 TLEFKKLYDNKLGPFINAEAAVHGKKIDGAGAEMLGFMVGNNLQELVSQIEKAALYVGSR 190

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +I  + VK I+  +      E+     +  +  A+      L +   +  +L      F
Sbjct: 191 PVIGVEDVKAIVSQSKSFTAFELARFMGEKNLAKALATLQAMLQNGEEAVMILGALASHF 250

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
           + + +I  + +   +    I ++ + +   +    + ++ +      +     ++
Sbjct: 251 RRIWRIRELLDQK-MPPADIGKQLKIHQFFLGEQ-VTQAKKY-PVTELEALFERL 302


>gi|108804355|ref|YP_644292.1| DNA polymerase III subunit delta [Rubrobacter xylanophilus DSM
           9941]
 gi|108765598|gb|ABG04480.1| DNA polymerase III, delta subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 306

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 6/253 (2%)

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK 117
                +       +   S SLF     ++++NL          L   +        +++ 
Sbjct: 29  TFDAAEDAPEAVVSACGSYSLFGGGAFVVVKNLDAWNASQKAVLAGYLESPAEETDLVLL 88

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
              +     L   A++   V            L+  I          +++E  + L    
Sbjct: 89  GGRLGARERLLAAAKRAGEVHVFE--RPTGRALVRWIVGRAQRMGLDLTEEVARELALRC 146

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
             D++    EL+KLS Y  E      + V+ +        I   ++A   G+   A+   
Sbjct: 147 SEDKLRLLGELEKLSLYVGEGRPAAREDVEALCPPDVEANIFAFVDALASGEPRRALPPL 206

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           +  LA+  P   + H   ++F+L+ +   + E      E   +         ++  L+E 
Sbjct: 207 EGLLAAGEPPLRIAHMARRQFRLVLRARSLLERGVPRPELARELKVPP-FVARK--LEEQ 263

Query: 298 LRIWNKNLVRETL 310
            R   +  +   L
Sbjct: 264 ARALGEEDLERAL 276


>gi|289550642|ref|YP_003471546.1| DNA polymerase III delta subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180174|gb|ADC87419.1| DNA polymerase III delta subunit [Staphylococcus lugdunensis
           HKU09-01]
          Length = 324

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 128/328 (39%), Gaps = 18/328 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +   YG    L+ +   +  +       D F+ V  N    + +IST   E  +   FS
Sbjct: 4   NLIAVYGDVPELVEKQSLEIIQTYLQQERDDFNFVKFNL--YEHDISTIIEETLTLPFFS 61

Query: 82  KKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130
           +KK IL++N    + EK         D L E I K   +++II +   N++ +   L K 
Sbjct: 62  EKKAILVKNAYVFTGEKVPKDLSTNTDKLLEFIDKYDGDNLIIFEVYQNKLDERKKLTKA 121

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   +  I    +    + + I++ L    K I ++A  + +   G +    + EL+K
Sbjct: 122 LKKHGQIKKIEQMSEE--DIKNWIQQQLHENYKDIKQDALNLFIELTGINFNIVQQELEK 179

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  +  +   I +Q V  II  +    +  +     + +   AI L    +  K     L
Sbjct: 180 LMLFIGDRPTINKQDVSMIINRSLEQNVFLLTEYIQKNQKQKAINLVKDLIIMKEEPIKL 239

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L      ++L  +  I+ +    S ++I +       P +  +    +R +  N + + +
Sbjct: 240 LALITSNYRLYYQCKILSQ-KGYSAQQIAKTVNA--HPYRVKLALGQIRHYQLNDILDII 296

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYI 338
           +      +  +     ++ I+   IL I
Sbjct: 297 NACAETDYKLKSSYMDKQLILELFILSI 324


>gi|163942079|ref|YP_001646963.1| DNA polymerase III subunit delta [Bacillus weihenstephanensis
           KBAB4]
 gi|229013544|ref|ZP_04170677.1| DNA polymerase III, delta subunit [Bacillus mycoides DSM 2048]
 gi|229135149|ref|ZP_04263949.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST196]
 gi|163864276|gb|ABY45335.1| DNA polymerase III, delta subunit [Bacillus weihenstephanensis
           KBAB4]
 gi|228648277|gb|EEL04312.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST196]
 gi|228747704|gb|EEL97574.1| DNA polymerase III, delta subunit [Bacillus mycoides DSM 2048]
          Length = 336

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     + ++   F 
Sbjct: 15  PLYVLYGTEAYFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDAHTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K+ILI++   L+ +K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   I         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVIEANAMQVQDVQKWIVSRADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|332160861|ref|YP_004297438.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665091|gb|ADZ41735.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 344

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 121/311 (38%), Gaps = 15/311 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  G++  L+ E  +  ++  +   + + FS   L+A    +NI +      + SLF+ 
Sbjct: 21  YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++ +L+   +      + + L ++      + ++I+++N++ K        +    + + 
Sbjct: 77  RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC    +  L   +         +I   A Q+L     G+ +A    L++LS     D 
Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLNIDNAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V+  + D         ++A + GK   A  +             LL    ++  
Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +    E   +    +  + +  +   +R ++ ++L+  +   +++ +  +      
Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQI--E 309

Query: 320 ARKKKYLEKNI 330
            R K+   ++I
Sbjct: 310 VRLKQDYGQSI 320


>gi|30264394|ref|NP_846771.1| DNA polymerase III subunit delta [Bacillus anthracis str. Ames]
 gi|47529845|ref|YP_021194.1| DNA polymerase III subunit delta [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187218|ref|YP_030470.1| DNA polymerase III subunit delta [Bacillus anthracis str. Sterne]
 gi|118479490|ref|YP_896641.1| DNA polymerase III subunit delta [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872032|ref|ZP_02216672.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0488]
 gi|167634517|ref|ZP_02392837.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0442]
 gi|167638622|ref|ZP_02396898.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0193]
 gi|170687368|ref|ZP_02878585.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0465]
 gi|170707369|ref|ZP_02897823.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0389]
 gi|177653266|ref|ZP_02935518.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0174]
 gi|190567059|ref|ZP_03019975.1| DNA polymerase III, delta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034325|ref|ZP_03101734.1| DNA polymerase III, delta subunit [Bacillus cereus W]
 gi|196044855|ref|ZP_03112089.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108]
 gi|218905460|ref|YP_002453294.1| DNA polymerase III, delta subunit [Bacillus cereus AH820]
 gi|225866304|ref|YP_002751682.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB102]
 gi|227817099|ref|YP_002817108.1| DNA polymerase III, delta subunit [Bacillus anthracis str. CDC 684]
 gi|228916955|ref|ZP_04080516.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929367|ref|ZP_04092390.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935643|ref|ZP_04098457.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948036|ref|ZP_04110321.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123862|ref|ZP_04253055.1| DNA polymerase III, delta subunit [Bacillus cereus 95/8201]
 gi|229186563|ref|ZP_04313724.1| DNA polymerase III, delta subunit [Bacillus cereus BGSC 6E1]
 gi|229602816|ref|YP_002868612.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0248]
 gi|254684080|ref|ZP_05147940.1| DNA polymerase III subunit delta [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721914|ref|ZP_05183703.1| DNA polymerase III subunit delta [Bacillus anthracis str. A1055]
 gi|254736428|ref|ZP_05194134.1| DNA polymerase III subunit delta [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741466|ref|ZP_05199153.1| DNA polymerase III subunit delta [Bacillus anthracis str. Kruger B]
 gi|254750904|ref|ZP_05202943.1| DNA polymerase III subunit delta [Bacillus anthracis str. Vollum]
 gi|254757768|ref|ZP_05209795.1| DNA polymerase III subunit delta [Bacillus anthracis str. Australia
           94]
 gi|301055815|ref|YP_003794026.1| putative DNA polymerase III subunit delta [Bacillus anthracis CI]
 gi|30259052|gb|AAP28257.1| DNA polymerase III, delta subunit [Bacillus anthracis str. Ames]
 gi|47504993|gb|AAT33669.1| DNA polymerase III, delta subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181145|gb|AAT56521.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|118418715|gb|ABK87134.1| DNA polymerase III, delta subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712163|gb|EDR17700.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0488]
 gi|167513470|gb|EDR88840.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0193]
 gi|167529969|gb|EDR92704.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0442]
 gi|170127613|gb|EDS96486.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0389]
 gi|170668563|gb|EDT19309.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0465]
 gi|172081548|gb|EDT66620.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0174]
 gi|190562050|gb|EDV16019.1| DNA polymerase III, delta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992867|gb|EDX56826.1| DNA polymerase III, delta subunit [Bacillus cereus W]
 gi|196024343|gb|EDX63016.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108]
 gi|218539074|gb|ACK91472.1| DNA polymerase III, delta subunit [Bacillus cereus AH820]
 gi|225788938|gb|ACO29155.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB102]
 gi|227006424|gb|ACP16167.1| DNA polymerase III, delta subunit [Bacillus anthracis str. CDC 684]
 gi|228596822|gb|EEK54481.1| DNA polymerase III, delta subunit [Bacillus cereus BGSC 6E1]
 gi|228659576|gb|EEL15223.1| DNA polymerase III, delta subunit [Bacillus cereus 95/8201]
 gi|228811622|gb|EEM57958.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824003|gb|EEM69821.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830273|gb|EEM75887.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842676|gb|EEM87763.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267224|gb|ACQ48861.1| DNA polymerase III, delta subunit [Bacillus anthracis str. A0248]
 gi|300377984|gb|ADK06888.1| possible DNA polymerase III, delta subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 336

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|314933759|ref|ZP_07841124.1| DNA polymerase III, delta subunit [Staphylococcus caprae C87]
 gi|313653909|gb|EFS17666.1| DNA polymerase III, delta subunit [Staphylococcus caprae C87]
          Length = 324

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 112/299 (37%), Gaps = 18/299 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +  ++   N      D F+ V  N    + +++    E  +  
Sbjct: 1   MSDNIITIYGEVPELVEKKSSEIVNNYLGQEKDDFNYVKFNM--YENDLTPIIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK I+++N    + EK   +       L E I K   +++I+ +   N++ +   L
Sbjct: 59  FFSDKKAIVVKNAYIFTGEKGAKELNHNPEQLMEFIEKYDGDNLILFEVYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  +    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKSLKKNAQLKKVEQMSEEE--IKKWIQNKLHENYKDIKQDALNLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L KL  Y  +   + +  V  II  +    +  +     +GK   AI L +  +  K   
Sbjct: 177 LSKLMLYIRDRPTVNKDDVNQIINRSLEQNVFLLTEYIQKGKKDKAIQLLNDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             LL      +  L     I E    S ++I +    +  P +  +     R +  N +
Sbjct: 237 IKLLALITSNY-RLYYQSKILEQKGYSGQQIAKTV--SAHPYRVKLALNQARYYQLNDL 292


>gi|310643089|ref|YP_003947847.1| DNA polymerase iii, delta subunit [Paenibacillus polymyxa SC2]
 gi|309248039|gb|ADO57606.1| DNA polymerase III, delta subunit [Paenibacillus polymyxa SC2]
          Length = 364

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 117/305 (38%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YGS+K  + + ++  K+ +    H  F+++  +  E    I     +  +     
Sbjct: 38  PVYLLYGSEKYQMKQFVDMLKEKVVEEEHRDFAIISYDLTET--PIEVVVEDAETAPFLV 95

Query: 82  KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            KK+I++ + S              L+ L   +       +I+  +++ ++ +   + K 
Sbjct: 96  PKKLIIVRDTSVFAAGKDNGKIEHRLETLLTYMDNPTDYSVIVFTVQAEKLDERKKIVKK 155

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +   SV+A +  P     L+  + +     +  ++  A + L+   G    +   E+ K
Sbjct: 156 LKSDASVIAFA--PMGGDDLVAWVHKRAAEREVQLAAGAAERLIQYTGTGLQSLAAEIDK 213

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y      I+   ++ ++       +  ++      ++  A+ +    L  K     +
Sbjct: 214 LCLYAGAQGTISSADIESLVPRNTEQNVFAMVEDLANLRLDKALSIFYELLKQKEEPIKI 273

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                ++F     +  +KE +  S+ +    ++ ++ P    +  +  R +    +R+ L
Sbjct: 274 AALITRQF---RIMLQVKELAGQSYSQQQIASQLSLHPYGVKVAGDQARRFRPEQLRQLL 330

Query: 311 HKIDH 315
           +++  
Sbjct: 331 YELGE 335


>gi|49478609|ref|YP_038378.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330165|gb|AAT60811.1| possible DNA polymerase III, delta subunit [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 336

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|117919448|ref|YP_868640.1| DNA polymerase III subunit delta [Shewanella sp. ANA-3]
 gi|117611780|gb|ABK47234.1| DNA polymerase III, delta subunit [Shewanella sp. ANA-3]
          Length = 343

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 107/306 (34%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L   H  ++ +G D  L+    + I Q  K         F   V    E   N 
Sbjct: 6   DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
                E  S SLFS ++II +   N          L+ ++     + ++I++  ++    
Sbjct: 60  GDLTQEWQSMSLFSSRRIIELTLPNAKPGADGSAALQALLQTPNPDVLLILEGPKLASEQ 119

Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +   S+ + + C           ++  +   + ++  +A+ +L     G+ +A+
Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPESDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         I    +     D     + ++ +A +  +  +A  +        
Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++ QLL  +    +        +  K    I   ++ + Q +L+  +  
Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLT 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QIEHML 301


>gi|116749517|ref|YP_846204.1| DNA polymerase III subunit delta [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698581|gb|ABK17769.1| DNA polymerase III, delta subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 332

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 111/326 (34%), Gaps = 19/326 (5%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + +F ++  +       V+   G  + LI E   +  + I+      F+     A E   
Sbjct: 3   ADEFFRRLEREPLS--PVYFLVGEAELLIEEAWKRLVEKIASGGARAFNGERYQAKEYTA 60

Query: 66  NISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
             +     + +  +F+ K+++++ ++    ++    L   + +      +++    +   
Sbjct: 61  --AEMVAGLRALPMFAPKRLLMVRHIENWPEEQRKILLSYLARPFPTACLVLT---LSGK 115

Query: 125 NTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             L KI E   + +   +  +  ++  L   + +      K +S +A   L   +G D  
Sbjct: 116 KGLEKI-EAAVTAVGTVVHLHGPSERELPRWLRDRARQRGKELSFQAAMHLAEQVGTDLQ 174

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              +EL+KL +Y  ++  I    V   +       I E+++A  + K    + +    LA
Sbjct: 175 RLESELEKLITYVGDNAAIEADDVLQAVSAQRGHTIFELLDAVAERKSGRTLAMLRSLLA 234

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI----IQKTEKNIIPMKRNILQESL 298
                  +L    +  + L ++    E      +      I +        +  +  E+ 
Sbjct: 235 EGQAPLQVLAMIARHVRQLWQVKSALEEGMPLPQAARKFNIHQFVAGKHARQAPLFSEA- 293

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKK 324
              +   +   +   D  +       
Sbjct: 294 ---DLYRMHRAICDTDFALKSTGTNP 316


>gi|24372755|ref|NP_716797.1| DNA polymerase III, delta subunit [Shewanella oneidensis MR-1]
 gi|24346830|gb|AAN54242.1|AE015561_2 DNA polymerase III, delta subunit [Shewanella oneidensis MR-1]
          Length = 343

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 110/307 (35%), Gaps = 18/307 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L   H  ++ +G D  L+    + I Q  K         F   V    E   N 
Sbjct: 6   DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
                E  + SLFS ++II +   +          L+ ++     + ++I++  ++    
Sbjct: 60  GDLTQEWQAMSLFSSRRIIELTLPSAKPGADGSAALQSLLQTPSPDVLLILEGPKLASEQ 119

Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +   S+ + + C           ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         I    +     D     + ++ +A +  +  +A  +        
Sbjct: 180 DQAMQLLQLLS-PSKPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNK 303
                LL    ++ QLL  +   +   +     +     K+ I   ++ + Q +L+  + 
Sbjct: 239 TAMPILLWALFKELQLLLSLKSEQAQGSP----LNSLFGKHRIWDKRKPLYQTALQRLSL 294

Query: 304 NLVRETL 310
             +   L
Sbjct: 295 AQIEHML 301


>gi|123443213|ref|YP_001007187.1| DNA polymerase III subunit delta [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090174|emb|CAL13037.1| DNA polymerase III, delta subunit [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 344

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 120/311 (38%), Gaps = 15/311 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  G++  L+ E  +  ++  +   + + FS   L+A    +NI +      + SLF+ 
Sbjct: 21  YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++ +L+   +      + + L ++      + ++I+++N++ K        +    + + 
Sbjct: 77  RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC    +  L   +          I   A Q+L     G+ +A    L++LS     D 
Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLDIDDAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V+  + D         ++A + GK   A  +             LL    ++  
Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +    E   +    +  + +  +   +R ++ ++L+  +   +++ +  +      
Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQ--ME 309

Query: 320 ARKKKYLEKNI 330
            R K+   ++I
Sbjct: 310 VRLKQDYGQSI 320


>gi|52141181|ref|YP_085649.1| DNA polymerase III subunit delta [Bacillus cereus E33L]
 gi|51974650|gb|AAU16200.1| possible DNA polymerase III, delta subunit [Bacillus cereus E33L]
          Length = 336

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|315658138|ref|ZP_07911010.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496467|gb|EFU84790.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           lugdunensis M23590]
          Length = 324

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 128/328 (39%), Gaps = 18/328 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +   YG    L+ +   +  +       D F+ V  N    + +IST   E  +   FS
Sbjct: 4   NLIAVYGDVPELVEKQSLEIIQTYLQQERDDFNFVKFNL--YEHDISTIIEETLTLPFFS 61

Query: 82  KKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130
           +KK IL++N    + EK         D L E I K   +++II +   N++ +   L K 
Sbjct: 62  EKKAILVKNAYVFTGEKVPKDLSTNTDKLLEFIDKYDGDNLIIFEVYQNKLDERKKLTKA 121

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   +  I    +    + + I++ L    K I ++A  + +   G +    + EL+K
Sbjct: 122 LKKHGQIKKIEQMSEE--DIKNWIQQQLHENYKDIKQDALNLFIELTGINFNIVQQELEK 179

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  +  +   I +Q V  II  +    +  +     + +   AI L    +  K     L
Sbjct: 180 LMLFIGDRPTINKQDVSIIINRSLEQNVFLLTEYIQKNQKQKAINLVKDLIIMKEEPIKL 239

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L      ++L  +  I+ +    S ++I +       P +  +    +R +  N + + +
Sbjct: 240 LALITSNYRLYYQCKILSQ-KGYSAQQIAKTVNA--HPYRVKLALGQIRHYQLNDILDII 296

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYI 338
           +      +  +     ++ I+   IL I
Sbjct: 297 NACAETDYKLKSSYMDKQLILELFILSI 324


>gi|304410298|ref|ZP_07391917.1| DNA polymerase III, delta subunit [Shewanella baltica OS183]
 gi|307301991|ref|ZP_07581749.1| DNA polymerase III, delta subunit [Shewanella baltica BA175]
 gi|304351707|gb|EFM16106.1| DNA polymerase III, delta subunit [Shewanella baltica OS183]
 gi|306914029|gb|EFN44450.1| DNA polymerase III, delta subunit [Shewanella baltica BA175]
          Length = 343

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L      ++ +G D  LI    + I QF K            V L   E   N 
Sbjct: 6   DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +    E  + SLFS K++I +         +    L+ ++     + ++II+  ++    
Sbjct: 60  NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPHPDMLLIIEGPKLANEQ 119

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +      + + C        M  ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDAHGMYLPCTTPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         ++   +     D     + ++ +A +  K  +A  +        
Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++  LL  +    +   ++   +  K    I   ++ + Q +L+  +  
Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVAQSALWSKHR--IWDKRKPLYQAALQRLSLE 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QLEHML 301


>gi|229198451|ref|ZP_04325155.1| DNA polymerase III, delta subunit [Bacillus cereus m1293]
 gi|228584954|gb|EEK43068.1| DNA polymerase III, delta subunit [Bacillus cereus m1293]
          Length = 336

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEALKKVIMELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|160915316|ref|ZP_02077529.1| hypothetical protein EUBDOL_01325 [Eubacterium dolichum DSM 3991]
 gi|158433115|gb|EDP11404.1| hypothetical protein EUBDOL_01325 [Eubacterium dolichum DSM 3991]
          Length = 316

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG++  L+ E  +  K  +     D  + VV +A   + +  T   +  +   FS+ 
Sbjct: 3   YVLYGTESYLLKE--SLAKILLQHGIQDEMNKVVYDAR--KTDAYTVMEDAQTYPFFSEY 58

Query: 84  KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           K I+++N      S +      + E  +K      I+I     +K +  +KI +K  +  
Sbjct: 59  KAIIVQNANFLSPSDDTNWDLHVLEEYLKQPLESTILIFIGNFEKLDARKKIVKKLQSVC 118

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             +     ++      ++E L     SI + A+++LL+ +  D +  +NEL KL  Y   
Sbjct: 119 KVLQFRKLDEQGKRRFVDEQLKKRSISIERNARELLLSRMPFDILMIQNELSKLELY--- 175

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              IT + V  I+       + +++NA ++ +I  A  + +        +  L+     +
Sbjct: 176 GDTITTEVVSSIVTRPLEDDVFQLVNAVVEKRIKEAFHIWEDLSTLNKDAVFLIALLAGQ 235

Query: 258 FQLLEKIHIIKECSNISFE-KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           F+ L ++  + +      E   +        P +     +++   + N +   L ++   
Sbjct: 236 FRFLYQVRELLDEGKQQKEITAVLGA----HPYRVQRSIQTVMHLSTNAILNILERL-AT 290

Query: 317 IHLARKKKYLEKNIIFQTIL 336
           +    K   L+KN+ F+  L
Sbjct: 291 LDQQIKSGKLDKNLGFEMFL 310


>gi|114046566|ref|YP_737116.1| DNA polymerase III subunit delta [Shewanella sp. MR-7]
 gi|113888008|gb|ABI42059.1| DNA polymerase III, delta subunit [Shewanella sp. MR-7]
          Length = 343

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 107/306 (34%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L   H  ++ +G D  L+    + I Q  K         F   V    E   N 
Sbjct: 6   DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
                E  S SLFS ++II +   N          L+ ++     + +++++  ++    
Sbjct: 60  GDLTQEWQSMSLFSSRRIIELTLPNAKPGADGSAALQALLQTPNPDVLLLLEGPKLASEQ 119

Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +   S+ + + C           ++  +   + ++  +A+ +L     G+ +A+
Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         I    +     D     + ++ +A +  +  +A  +        
Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++ QLL  +    +        +  K    I   ++ + Q +L+  +  
Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLT 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QIEHML 301


>gi|318604763|emb|CBY26261.1| DNA polymerase III delta subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 344

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 120/311 (38%), Gaps = 15/311 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  G++  L+ E  +  ++  +   + + FS   L+A    +NI +      + SLF+ 
Sbjct: 21  YLLCGNEPLLLQESQDHIRRVAATHDFSEHFSFA-LDAHTEWENIFSL---CQALSLFAS 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++ +L+   +      + + L ++      + ++I+++N++ K        +    + + 
Sbjct: 77  RQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSPNSVF 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC    +  L   +          I   A Q+L     G+ +A    L++LS     D 
Sbjct: 137 VSCQTPEQAQLPRWVSTRAKSLNLDIDDAAVQLLCYCYEGNLLALSQALERLSL-LYPDG 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V+  + D         ++A + GK   A  +             LL    ++  
Sbjct: 196 KLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVILLRTLQRELL 255

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +    E   +    +  + +  +   +R ++ ++L+  +   +++ +  +      
Sbjct: 256 QLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQAVRLLSQI--E 309

Query: 320 ARKKKYLEKNI 330
            R K+   ++I
Sbjct: 310 VRLKQDYGQSI 320


>gi|34101816|gb|AAQ58184.1| DNA-directed DNA polymerase, delta subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 313

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 95/259 (36%), Gaps = 10/259 (3%)

Query: 66  NISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + S   + ++S SLF+  K+  I I       + ++ L+ +      + + +I   ++ K
Sbjct: 39  DWSQLTDSMSSVSLFASLKLLEIRIPGGKPGTEGVEALQRLAADPPQDTVTLITLPKLDK 98

Query: 124 NNTLRKIAEKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                K       +   +   P  +  L   I   L    + +  +A    +  + G+ +
Sbjct: 99  AQQQSKWFTALDKIAQVVEARPVGRAELPGWISRRLKAQGQQLGADALAFFVDRVEGNLL 158

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A+R E+ KL+        ++   ++  + +     + ++  A + G       + D  +A
Sbjct: 159 AARQEVDKLAL-LYPKGELSLADLQAAVANVARFDVFQLSEAWLAGDTPRLTRMLDGLMA 217

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  +L    +  ++L K+    +      +   ++    +   K+ + + +LR   
Sbjct: 218 EGEAPVLVLWSLAEDVRMLLKLRQGLKDGRQPRDMA-RELR--LWGEKQKLAEPALRRIG 274

Query: 303 KNLVRETLH---KIDHRIH 318
              +   L    +ID +I 
Sbjct: 275 PRKLMAALSECARIDRQIK 293


>gi|258516400|ref|YP_003192622.1| DNA polymerase III, delta subunit [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780105|gb|ACV63999.1| DNA polymerase III, delta subunit [Desulfotomaculum acetoxidans DSM
           771]
          Length = 378

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 121/348 (34%), Gaps = 51/348 (14%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L+ E I  FKK +       F+  ++N  E         +   +    +
Sbjct: 18  PVYLLYGQEVYLLNEAIKNFKKIVLNEETGDFNFDLINGEETT--PEDIVSLAQNLPFMA 75

Query: 82  KKKIILIEN-------------------------------------------LSTEKKVL 98
           +K+++++++                                            + +    
Sbjct: 76  EKRLVVVKDFPAFNAPKNKAPEQEAAGEEEQAAGEKENISVDGKGKRAKSKSTADDASRY 135

Query: 99  DCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
             L + I K   +  ++   S  + K   L +   K   V  I      K  L   + + 
Sbjct: 136 KALLQYIEKPSSDTCLLFTFSGSVDKRKKLVQAINKTGEV--IDFVLLKKQDLRKWLLQQ 193

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217
                K+   EA ++ L  +  D      E++KL +Y  +  +IT++ ++ ++     L 
Sbjct: 194 AKKAGKTFQPEALELFLTGVKNDLYRISAEVKKLFNYTDDRAIITKEDIEQVVISQIDLS 253

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
           I  + +A  + +  +A+      L  + P   +L    ++F+LL +   ++E  +   E 
Sbjct: 254 IFAVADAIGEKRCSDALRGIRDLLLYREPPQKILVMIYRQFRLLFQYKALQEEGDSQSEI 313

Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
              + +  + P     +    + ++   + + ++ +       +  + 
Sbjct: 314 ---QAKMKLHPYVAGKIARQAKNFSIEELYKAMYDLSEIDAATKSGQA 358


>gi|148241175|ref|YP_001226332.1| DNA polymerase III subunit delta [Synechococcus sp. RCC307]
 gi|147849485|emb|CAK26979.1| DNA polymerase III, delta subunit [Synechococcus sp. RCC307]
          Length = 321

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 112/289 (38%), Gaps = 20/289 (6%)

Query: 22  FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            + +++G D     E    +    I        +L  L+     +      NE  +    
Sbjct: 2   PIHLYWGDDA-TARERAVQELIDQIIEPAWVSLNLSRLDGSSADQAAQAL-NEARTAPFG 59

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNE----IKKNNTLRKIA 131
              +++L++     ++    L E +          +H++++ + +    ++    LRK+A
Sbjct: 60  GGGRVVLLQRSPFCERCPAELAEQLESALPLIPEQSHLVLVSAGKPDARLRTTKALRKVA 119

Query: 132 EKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           E+    L AI     +   L++L++ S    Q  +   A ++L   +G D      EL+K
Sbjct: 120 EEKKFPLPAIW----DGAGLIELVQRSAAAAQLQLEPAAAELLADTIGNDSSRLAGELEK 175

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+ YC  +  +  + VK +        +  +  A + G +  A+   D  +A+  P   L
Sbjct: 176 LALYC-GEKAVDVEAVKALAGPAQHNAL-AVGEALLAGDVGGALTQIDGLMAANEPPLRL 233

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
           +   + + +    + ++++        I +       P +  ++++ LR
Sbjct: 234 VASLVSQLRGWLWLTLLEQSGEQDPMVIAKAAGIG-NPKRIYVMRKQLR 281


>gi|161594061|ref|NP_900177.2| DNA polymerase III subunit delta [Chromobacterium violaceum ATCC
           12472]
          Length = 334

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 95/259 (36%), Gaps = 10/259 (3%)

Query: 66  NISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + S   + ++S SLF+  K+  I I       + ++ L+ +      + + +I   ++ K
Sbjct: 60  DWSQLTDSMSSVSLFASLKLLEIRIPGGKPGTEGVEALQRLAADPPQDTVTLITLPKLDK 119

Query: 124 NNTLRKIAEKFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                K       +   +   P  +  L   I   L    + +  +A    +  + G+ +
Sbjct: 120 AQQQSKWFTALDKIAQVVEARPVGRAELPGWISRRLKAQGQQLGADALAFFVDRVEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A+R E+ KL+        ++   ++  + +     + ++  A + G       + D  +A
Sbjct: 180 AARQEVDKLAL-LYPKGELSLADLQAAVANVARFDVFQLSEAWLAGDTPRLTRMLDGLMA 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  +L    +  ++L K+    +      +   ++    +   K+ + + +LR   
Sbjct: 239 EGEAPVLVLWSLAEDVRMLLKLRQGLKDGRQPRDMA-RELR--LWGEKQKLAEPALRRIG 295

Query: 303 KNLVRETLH---KIDHRIH 318
              +   L    +ID +I 
Sbjct: 296 PRKLMAALSECARIDRQIK 314


>gi|47569319|ref|ZP_00240003.1| DNA polymerase III, delta subunit [Bacillus cereus G9241]
 gi|229157938|ref|ZP_04286010.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 4342]
 gi|47553990|gb|EAL12357.1| DNA polymerase III, delta subunit [Bacillus cereus G9241]
 gi|228625498|gb|EEK82253.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 4342]
          Length = 336

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|325104230|ref|YP_004273884.1| DNA polymerase III, delta subunit [Pedobacter saltans DSM 12145]
 gi|324973078|gb|ADY52062.1| DNA polymerase III, delta subunit [Pedobacter saltans DSM 12145]
          Length = 334

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 102/263 (38%), Gaps = 16/263 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +   I  +    +  +       F++ +    +   +     N      + S
Sbjct: 17  PIYLLHGEESYYIDLIAEALENTVLSEAERGFNMSIFYGKDT--DPVNVLNAAKRFPMMS 74

Query: 82  KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFT-- 135
             ++IL++     K  K+ +  +    K + + I+I+  K  +  K   + K+ EK    
Sbjct: 75  DYQVILVKEAQDLKFDKIAESFQAYCEKPLQSTILILCHKHGKFDKRKKVYKVIEKTGLV 134

Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                I  Y      +   I++ +      I+ +A Q+L   LG D     NE++KL   
Sbjct: 135 FESATI--YE---NKIPAWIDDFVKSRGYHINPKASQLLAEYLGNDLSKISNEVEKLMLN 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
             +   I  + ++D I  +    + E+ +A  +  I  A  + ++F A+    P   ++ 
Sbjct: 190 VPQGQEIGTKEIQDNIGISKEFNVFELQSALGKKDILKANQIINYFEANPKSNPLVLVMG 249

Query: 253 GFLQKFQLLEKIHIIKECSNISF 275
                F  + K H +++ S  + 
Sbjct: 250 NLYTYFSKILKYHYLQDKSEAAR 272


>gi|110834810|ref|YP_693669.1| DNA polymerase III subunit delta [Alcanivorax borkumensis SK2]
 gi|110647921|emb|CAL17397.1| DNA polymerase III, delta subunit [Alcanivorax borkumensis SK2]
          Length = 337

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 107/267 (40%), Gaps = 16/267 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +     ELI+  ++       D        + +   + +   NE  S SLF 
Sbjct: 18  PVYLVAGDEPLQQGELIDDLRRAARDQGFDERQRF---SSDTGIDWNALLNESQSMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIII----KNICNHIIIIKSNEIKKN----NTLRKIA 131
            ++I+  ++ +   +K     L +++     +   + +++I+ + + +     +   K  
Sbjct: 75  GRRILELVLNDKRPDKTGSQILRDVLASLKGEASSDTLLLIRCSRLDRRKDWNSAWVKAL 134

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +       I  +P     L + ++E L       S++A  +L+    G+ +A+  E+ KL
Sbjct: 135 D--EMGAVIEVWPVEGNGLRNWLQERLTSRGLRASEDALALLIERSEGNLLAAAQEVDKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +   +ED  +  + V+  + D+      ++ +AT QG     + +     A  +    LL
Sbjct: 193 AL-LVEDGQVGPEDVQQAVGDSSRYSPFDLTDATAQGDSQRVMHIIQTLRAEGVEPPVLL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI 278
               +  +LL+ +        +  +++
Sbjct: 252 WALSRDIRLLDGMLGGGPPPRLPPQRV 278


>gi|119944942|ref|YP_942622.1| DNA polymerase III, delta subunit [Psychromonas ingrahamii 37]
 gi|119863546|gb|ABM03023.1| DNA polymerase III, delta subunit [Psychromonas ingrahamii 37]
          Length = 331

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 115/300 (38%), Gaps = 17/300 (5%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL-EIQKNISTFWNEINSTSLFSKK 83
           + +G +  L  E   Q +K      +    L  L+   +   +    + E  + SLFS+K
Sbjct: 21  LIFGDEALLCLEATEQIQKAAKKQGY----LEKLSFSLDGNFDNDLIFGEFQTLSLFSEK 76

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEKFTSVLA 139
           KIIL+    T K+    + EI      + ++I++  ++      +   + + +K   V  
Sbjct: 77  KIILLTLTKTNKENTAFIREITPLLHPDILLILQGPKLNNQQMSSVWFKTLEQKGIFVAT 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                         + + L        K+    L  +  G+ +A++ E +KL+       
Sbjct: 137 ---NLPQAHRFPQWVFQRLKALNLHADKDIIDYLCLHFEGNLLAAKQEFEKLAL-LYPKQ 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T Q V+  I   +   + + I++ + G    ++ +     A       L      + Q
Sbjct: 193 NLTLQQVEQSITTHNHFNLFQWIDSLLAGDQMRSVRILKQLKAEGTELLLLCATLNNEVQ 252

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K+    +  +++  ++  + +  + P K+ +++++L   N N + + +  I      
Sbjct: 253 KLLKLSYQSQQHSLT--QLFNQQQPKLWPAKQQLIRDALTRLNINKLEKMI--IQCAEIE 308


>gi|269215624|ref|ZP_06159478.1| DNA polymerase III, delta subunit [Slackia exigua ATCC 700122]
 gi|269131111|gb|EEZ62186.1| DNA polymerase III, delta subunit [Slackia exigua ATCC 700122]
          Length = 318

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 22  FVFIFYGSDKGLIFELI-NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  G D+ L  E +  + + N++      F+   L+  E     +      N+    
Sbjct: 6   PAYLIVGEDE-LKRERVLERLQANVAARGDIDFN---LDVFESAAEGADVIAACNTLPFA 61

Query: 81  SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           S  +++L+  +   +K+ +  L E +     + ++ +   ++ K+  L K A K      
Sbjct: 62  SSVRLVLVRGVDAMKKQSVSALVEYLGNPSPSTVLALVGAKVPKSAALYKAASKLGKSAV 121

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I C P  +  L   + +       +IS  A   L+  +G + +A   EL K++       
Sbjct: 122 IDCAPLKRHELPSRVRDMAATHGIAISLAAATRLVELVGENTVALDAELHKIALAHPSKA 181

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I    ++ ++  T      + ++A     +   + L             +L   + + +
Sbjct: 182 PIGASAIEALVAHTSKTKYWDFVDAFASRDLPRCLALYAHL---DDSPVIMLARCVARLR 238

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L     +          ++Q+         +N      R+W    ++E L         
Sbjct: 239 ELIMWRALAARGGSLPNDLVQRLGVPA-WKLKNH-ASWTRLWTAEELKEALIAARDADRA 296

Query: 320 ARKKKYLEKNII 331
            +     +   +
Sbjct: 297 MKSGADQDDAFL 308


>gi|229019548|ref|ZP_04176364.1| DNA polymerase III, delta subunit [Bacillus cereus AH1273]
 gi|229025789|ref|ZP_04182188.1| DNA polymerase III, delta subunit [Bacillus cereus AH1272]
 gi|228735497|gb|EEL86093.1| DNA polymerase III, delta subunit [Bacillus cereus AH1272]
 gi|228741714|gb|EEL91898.1| DNA polymerase III, delta subunit [Bacillus cereus AH1273]
          Length = 336

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 120/322 (37%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAYFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            +K+ILI++   L+ +K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  DRKVILIKSPLFLTAQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   +          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWVVSRAEEAHVYIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITSKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   ++  + ++ 
Sbjct: 253 VSQFRLLNQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKRVILELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|196039162|ref|ZP_03106468.1| DNA polymerase III, delta subunit [Bacillus cereus NVH0597-99]
 gi|196029789|gb|EDX68390.1| DNA polymerase III, delta subunit [Bacillus cereus NVH0597-99]
          Length = 336

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 124/321 (38%), Gaps = 13/321 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++   I E I              F++V  +  E    +     +  +   F +
Sbjct: 16  LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73

Query: 83  KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           +K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +       
Sbjct: 74  RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 133

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y 
Sbjct: 134 TADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 193

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT + V +++  +    +  +    ++  I  A+ + D     +     LL   +
Sbjct: 194 GMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLV 253

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++  
Sbjct: 254 SQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 310

Query: 316 RIHLARKKKYLEKNIIFQTIL 336
             + + K   ++K ++ +  L
Sbjct: 311 ADY-SMKTGKMDKKLVLEFFL 330


>gi|229174998|ref|ZP_04302517.1| DNA polymerase III, delta subunit [Bacillus cereus MM3]
 gi|228608459|gb|EEK65762.1| DNA polymerase III, delta subunit [Bacillus cereus MM3]
          Length = 336

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PVYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K+ILI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVILIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVGELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|326796282|ref|YP_004314102.1| DNA polymerase III subunit delta [Marinomonas mediterranea MMB-1]
 gi|326547046|gb|ADZ92266.1| DNA polymerase III, delta subunit [Marinomonas mediterranea MMB-1]
          Length = 346

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 117/307 (38%), Gaps = 11/307 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   +  Q+  K L     ++I  G +  L  E  +  ++       +     V +A  
Sbjct: 2   KVRPDQLDQQLAKGLA---PIYIVSGDETLLCQEAADSVRRAAKEQGIEERLRFVADAQF 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
             ++     NE  + SLFS +++  I+     +K    L ++      +++I++   ++ 
Sbjct: 59  DWQD---VINESQALSLFSSRRLFDIQIDKLGEKHSKALTQLGQSLSDDNVILLSFPKVD 115

Query: 123 KNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                 K   +  +  + +  +P +   L   +++       +IS++A  ++     G+ 
Sbjct: 116 ARTQKAKWFSQLESQGVFVQIWPIDTNKLPAWVQQRAKKFSLTISQDAAALICERGEGNL 175

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +A   EL+KL     E   I  + V + + D+    I ++ +  + GKI  A+      +
Sbjct: 176 LAISQELEKLVLSQGEGAQIDLETVANSVTDSSRYSIYDLSDRLLAGKIKEALHCLHQLV 235

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           A  +    +L    ++ Q L  ++   + S+       +     I   +  + + +    
Sbjct: 236 AEGVEPTIILWLLNREVQTLVDLYHASKTSDFRA--ACRSLR--IWDKRIPMYERAYARH 291

Query: 302 NKNLVRE 308
           N + +  
Sbjct: 292 NPSTLPY 298


>gi|206976058|ref|ZP_03236968.1| DNA polymerase III, delta subunit [Bacillus cereus H3081.97]
 gi|217961813|ref|YP_002340383.1| DNA polymerase III subunit delta [Bacillus cereus AH187]
 gi|222097768|ref|YP_002531825.1| DNA polymerase iii subunit delta [Bacillus cereus Q1]
 gi|229141061|ref|ZP_04269603.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST26]
 gi|206745810|gb|EDZ57207.1| DNA polymerase III, delta subunit [Bacillus cereus H3081.97]
 gi|217067837|gb|ACJ82087.1| DNA polymerase III, delta subunit [Bacillus cereus AH187]
 gi|221241826|gb|ACM14536.1| DNA polymerase III, delta subunit [Bacillus cereus Q1]
 gi|228642339|gb|EEK98628.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST26]
          Length = 336

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIMELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|113969339|ref|YP_733132.1| DNA polymerase III subunit delta [Shewanella sp. MR-4]
 gi|113884023|gb|ABI38075.1| DNA polymerase III, delta subunit [Shewanella sp. MR-4]
          Length = 343

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 108/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L   H  ++ +G D  L+    + I Q  K         F   V    E   N 
Sbjct: 6   DQLSRHLNPLHACYLIFGDDPWLLETSKDQIRQAAKRQG------FEERVQLIQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
                E  S SLFS ++II +   N     +    L+ ++     + ++I++  ++    
Sbjct: 60  GDLTQEWQSMSLFSSRRIIELTLPNAKPGAEGSAALQALLQTPNPDVLLILEGPKLASEQ 119

Query: 126 TLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +   S+ + + C           ++  +   + ++  +A+ +L     G+ +A+
Sbjct: 120 TNSKWFKTLDSLGIYLPCTTPEGDQFRRWLDSRIAHFKLNLQPDARAMLYTLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         I    +     D     + ++ +A +  +  +A  +        
Sbjct: 180 DQAMQLLQLLS-PSQPIGADELSHYFEDQSRFTVFQLTDALLNNRQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++ QLL  +    +        +  K    I   ++ + Q +L+  +  
Sbjct: 239 TAMPILLWALFKELQLLLSLKSE-QAQGAPLNSLFGKHR--IWDKRKPLYQTALQRLSLI 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QIEHML 301


>gi|229093393|ref|ZP_04224498.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-42]
 gi|228689987|gb|EEL43790.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-42]
          Length = 321

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 124/321 (38%), Gaps = 13/321 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++   I E I              F++V  +  E    +     +  +   F +
Sbjct: 1   MYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 58

Query: 83  KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           +K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +       
Sbjct: 59  RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 118

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y 
Sbjct: 119 TADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 178

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT + V +++  +    +  +    ++  I  A+ + D     +     LL   +
Sbjct: 179 GMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLV 238

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++  
Sbjct: 239 SQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 295

Query: 316 RIHLARKKKYLEKNIIFQTIL 336
             + + K   ++K ++ +  L
Sbjct: 296 ADY-SMKTGKMDKKLVLEFFL 315


>gi|126175471|ref|YP_001051620.1| DNA polymerase III subunit delta [Shewanella baltica OS155]
 gi|125998676|gb|ABN62751.1| DNA polymerase III, delta subunit [Shewanella baltica OS155]
          Length = 343

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L      ++ +G D  LI    + I QF K            V L   E   N 
Sbjct: 6   DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +    E  + SLFS K++I +         +    L+ ++     + ++II+  ++    
Sbjct: 60  NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +      + + C        M  ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         ++   +     D     + ++ +A +  K  +A  +        
Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++  LL  +    +   ++   +  K    I   ++ + Q +L+  +  
Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QLEHML 301


>gi|217972283|ref|YP_002357034.1| DNA polymerase III subunit delta [Shewanella baltica OS223]
 gi|217497418|gb|ACK45611.1| DNA polymerase III, delta subunit [Shewanella baltica OS223]
          Length = 343

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L      ++ +G D  LI    + I QF K            V L   E   N 
Sbjct: 6   DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +    E  + SLFS K++I +         +    L+ ++     + ++II+  ++    
Sbjct: 60  NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +      + + C        M  ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         ++   +     D     + ++ +A +  K  +A  +        
Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++  LL  +    +   ++   +  K    I   ++ + Q +L+  +  
Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QLEHML 301


>gi|312110159|ref|YP_003988475.1| DNA polymerase III subunit delta [Geobacillus sp. Y4.1MC1]
 gi|311215260|gb|ADP73864.1| DNA polymerase III, delta subunit [Geobacillus sp. Y4.1MC1]
          Length = 340

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 132/325 (40%), Gaps = 18/325 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  L+ E      + +       F++ V +  EI    +    +  +     
Sbjct: 16  PLYLLYGTESFLLTETYELLIRTVLTEEEREFNVSVYDCEEIPVQAA--LEDAETFPFLG 73

Query: 82  KKKIILIEN-----LSTEKKVLDCLEEI--IIKNICNHIIIIKSNE---IKKNNTLRKIA 131
           +K++I+++N        EK++   L+++   I +     I++       + +   + K+ 
Sbjct: 74  EKRVIIVKNPYFFTAEKEKEITHDLKKLESYITSPSPFSIVVFVGAYEKLDERKKITKLM 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++   V   +   +    L + + E +      + + A   LL   G + +   NEL KL
Sbjct: 134 KEHAEVFIANPLAE--KELREWMMERVRQNGAMMEENAVDALLQTAGTNLMTLANELDKL 191

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +     +I ++ V++++  T    +  ++    + +I  A+ +    L +      +L
Sbjct: 192 ALFVGPGGMIRQETVENLVSRTLEQNVFVLVEKVTKRQIAEALQVFYDLLENNEEPLKIL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                +F+LL ++  +        ++I    +  + P +  +      ++++  + + + 
Sbjct: 252 ALLANQFRLLYQVKWLA-AKGYGQQQIASILK--VHPFRIKLAMGQAALFSEEELMKAIQ 308

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           +I    +   K   +++ +I + +L
Sbjct: 309 QIAEADYEM-KSGAMDRQLIMELLL 332


>gi|326692433|ref|ZP_08229438.1| hypothetical protein LargK3_01552 [Leuconostoc argentinum KCTC
           3773]
          Length = 332

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 128/333 (38%), Gaps = 21/333 (6%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N  L++F  +  G +  L  +  +   K +        +    +     + +    N+  
Sbjct: 12  NDALANFYVVI-GDEPAL-SQRAHSAFKALIQPEDVEMNYSQFDLA--VQGVDELLNDAM 67

Query: 76  STSLFSKKKIILIEN---LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIK--KNNT 126
           S   F  +++I+++N   L+ + K+ D     L +++ + +  +I++   N++K  K   
Sbjct: 68  SMPFFGNRRVIIVQNPEFLTAKGKISDHDQKSLLQLLAQPVTENIVVFFINDLKIDKRKK 127

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           + K   +    + +     N+      I + L      I  +A Q LL        A +N
Sbjct: 128 VTKAILQTAETVDVP--ALNEHRARQAITQQLQQRAYKIDADAMQELLVRTNAQYSAMQN 185

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL KL +Y      I+ + V  ++  T    + ++++A +  ++  A+ +    L +  P
Sbjct: 186 ELPKLVAYATHHKHISLEAVSALVPKTLTATVFDLVDAVMTQRVEQALTIYRELLQNGEP 245

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
           +  +      +F+LL +I      ++    K +      + P +  + +  L+ +    +
Sbjct: 246 ALRINAVLTGQFRLLLQI-AGMTGTDQDIGKAL-----GVHPYRVKLAKGMLKKYALPAL 299

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           R     +       +      + +  + IL  A
Sbjct: 300 RAGYLGMVAIEIKLKSTTQDPEMLFERFILKTA 332


>gi|157693056|ref|YP_001487518.1| DNA polymerase III subunit delta [Bacillus pumilus SAFR-032]
 gi|157681814|gb|ABV62958.1| DNA-directed DNA polymerase III delta subunit [Bacillus pumilus
           SAFR-032]
          Length = 339

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 116/310 (37%), Gaps = 14/310 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V+  YG +  L+ E   + ++ +       F+  V +  E+    +    E  +    
Sbjct: 15  HPVYCLYGKETYLLQETAAKLRQAVVDEETKDFNYSVFDMEEVPLEQAVIDAE--TFPFM 72

Query: 81  SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            ++++++I+N             +  L  LE  + K     I+++ +   K +   +   
Sbjct: 73  GERRLVVIKNPYFLTAEKKKEKIEHELSLLEAYLEKPAPYTILVLLAPYEKLDERKKITK 132

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                   +     N     D     +    KSI  EA + L+   GG   +   E++KL
Sbjct: 133 LLKKKAAMVEAKELNPKETTDFTITLVKTEGKSIFSEAAEQLVMLCGGSLSSLFQEVRKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S+Y  E   I    V  ++  +    I E+IN  +  +   A+ +    L        +L
Sbjct: 193 STYIGEREEIELADVNQLVARSLEQNIFELINQIVNRRRSQAMQMFYDLLKQNEEPIKIL 252

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                +F+L+ +     +      ++I    +  + P +  +  +  R++++  +++ + 
Sbjct: 253 ALISTQFRLILQTKYFAQ-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELKQIVK 309

Query: 312 KIDHRIHLAR 321
           ++    +  +
Sbjct: 310 ELSTIDYEMK 319


>gi|219849836|ref|YP_002464269.1| DNA polymerase III subunit delta [Chloroflexus aggregans DSM 9485]
 gi|219544095|gb|ACL25833.1| DNA polymerase III, delta subunit [Chloroflexus aggregans DSM 9485]
          Length = 324

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 118/324 (36%), Gaps = 12/324 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++FYG+++    E + + + ++     D  ++ VL+  ++   I        +    + 
Sbjct: 2   IYLFYGANELARSEALAELRSHLPADVAD-LNVSVLDGRKLT--IEQLVAACEAHPFLAD 58

Query: 83  KKIILIENL---STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138
           ++++++ N    S   K  + L +   +      ++ ++  +I + + L     K   V 
Sbjct: 59  RRLVIVYNALKHSKAGKAREELRDYCARVPPTCDLVFVEQEDIDRRHLLFTYLSKHGVVR 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                      L+  I +   +   +I   A Q L+   G D     NEL KL+SY    
Sbjct: 119 EFPLLS--GSELLHWIGQRARLLSVTIEPAAAQRLVDLAGNDSRTLVNELAKLASYVGRG 176

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I +  V  ++ D     +   I+     ++  A+  A   +      H +L    ++ 
Sbjct: 177 GKIDQAAVDRLVTDQQEQNLFAFIDDLSGKRLGAALRGARALIEDGEAPHYVLFMLARQI 236

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           ++L  +           + I  +        ++    E +R +    +     ++    +
Sbjct: 237 RILLHVK-QLLGQRRRADDIAGELGLKPFVARKAA--EQVRHFTVAELVTAHDRLLELDY 293

Query: 319 LARKKKYLEKNIIFQTILYIAQTA 342
             +  K   +  +   ++ I Q++
Sbjct: 294 AIKTGKMQAETALELFVVEICQSS 317


>gi|82701647|ref|YP_411213.1| DNA polymerase III, delta subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82409712|gb|ABB73821.1| DNA polymerase III, delta subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 338

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 110/292 (37%), Gaps = 10/292 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +  L  E  +  +       +    +  +++     N +      NS SLF 
Sbjct: 18  PLYTVSGDELLLAIEAADLIRVKARQGGYIEREIFNVDSYF---NWTELERCSNSLSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
           +++II   I +     +    LE+       + + ++    I +     +  +   +   
Sbjct: 75  ERRIIDLRIPSGKPGNQGSAVLEKYCRALPPDTVTLVTLPRIDQQGAATRWFKALDAAGA 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+ YP  +  L D I + L +  ++   +  Q L   + G+ +A+  EL+KL+      
Sbjct: 135 VITVYPVERGRLPDWIGQRLTMQGQNADIDTLQFLADKVEGNLLAAYQELKKLAL-LYPP 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +++ + VKD + D       ++ +A + G       + +      M    +++    + 
Sbjct: 194 GMLSFEQVKDAVLDVARYDAFKLSDAMVAGDTARYTRILEVLQGEGMALPLIVNTLAGQI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +LL  I    +       ++  ++   +   ++ I++ + R  N   +   L
Sbjct: 254 RLLVAIRTGLDA-GKPPGQLTSQSR--VWRDRQKIMENAARRLNLEQLASAL 302


>gi|228910160|ref|ZP_04073979.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 200]
 gi|228849443|gb|EEM94278.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 200]
          Length = 336

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT Q V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTQLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|315122026|ref|YP_004062515.1| DNA polymerase III subunit delta [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495428|gb|ADR52027.1| DNA polymerase III subunit delta [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 86

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 64/85 (75%)

Query: 1  MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
          M  I S++F +KS   L  S+FVFIFYGSDKGLIFEL+NQFKK I + +HD F  VVLNA
Sbjct: 1  MVAIRSNEFTKKSIDQLLTSYFVFIFYGSDKGLIFELVNQFKKRIGVLHHDQFYFVVLNA 60

Query: 61 LEIQKNISTFWNEINSTSLFSKKKI 85
          L+IQ+N    WNE+ S SLF++KK+
Sbjct: 61 LDIQENPEILWNEVKSISLFNEKKL 85


>gi|218282258|ref|ZP_03488557.1| hypothetical protein EUBIFOR_01139 [Eubacterium biforme DSM 3989]
 gi|218216726|gb|EEC90264.1| hypothetical protein EUBIFOR_01139 [Eubacterium biforme DSM 3989]
          Length = 314

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 120/296 (40%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++I YG DK ++   +   KK  SI  +    + V +A      IS    ++++ S+F  
Sbjct: 3   IYILYGKDKSMVSMKLEAIKKRHSIQEN----VNVYDAQT--DEISNVLQDLDAYSIFDD 56

Query: 83  KKIILIEN---LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            K+I++ N   LS++      ++  +++     I+++     K +   +K+ E  +    
Sbjct: 57  DKMIIVNNCTFLSSKNTTNYEVDPFLLRKDTEMILVLICPSDKLDTRKKKVKEISSCATL 116

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
            SC   +       +++ L      +  +    + + +G D +  +NE++K+S Y     
Sbjct: 117 YSCLALDDKSQKFYVQDKLKEFGVKVDFKTLDWMTSRMGLDPMCIQNEIEKISIYSKNP- 175

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             T + V++++       I ++++A         +     F    M   A++     + +
Sbjct: 176 --TFEDVQNLLIVEPTNDIFKMVDAFFSQNGILLLAYYRNFRKLNMQPVAIVALLASQIR 233

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            L ++ ++ +      +  I +  K      +  +Q+++R  +   +   L  +  
Sbjct: 234 FLFQVRVLMDEGK--AQATIAQELKANPYRVKLNMQKAMRF-SSETLLYNLSLLAD 286


>gi|323464318|gb|ADX76471.1| DNA polymerase III, delta subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 324

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 111/302 (36%), Gaps = 19/302 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            + + +G    LI     Q  +        D F+ V  N  E   N  T   E  +   F
Sbjct: 3   NIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYETTLN--TIIEEAMTLPFF 60

Query: 81  SKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129
           S KKII+++N    + EK         D L E I K     +II  +++ ++ +   + K
Sbjct: 61  SDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASLIIFQVQAVKLDERKKVVK 120

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
              K  ++  I      +  +   I + L    K I ++A + L+   G      + EL 
Sbjct: 121 ALRKVANIKKIE--QMTEQEMQKWIHQYLNQSYKEIKQDALEALIQLTGIHYRMIKQELD 178

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  +  +   I ++ V+ I+  +    +  + +   +G+   AI L    +  K     
Sbjct: 179 KLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKAQAISLVKDLIQLKEEPIK 238

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           LL      +  L     I      S ++I +     + P +  +     R ++ + +   
Sbjct: 239 LLALITSNY-RLYYQSKILNQKGYSGQQIAKTVG--VHPYRVKLALNQARKYDLDTLLTI 295

Query: 310 LH 311
           + 
Sbjct: 296 MD 297


>gi|206969403|ref|ZP_03230357.1| DNA polymerase III, delta subunit [Bacillus cereus AH1134]
 gi|228954609|ref|ZP_04116633.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081586|ref|ZP_04214082.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-2]
 gi|229180601|ref|ZP_04307942.1| DNA polymerase III, delta subunit [Bacillus cereus 172560W]
 gi|229192535|ref|ZP_04319496.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 10876]
 gi|206735091|gb|EDZ52259.1| DNA polymerase III, delta subunit [Bacillus cereus AH1134]
 gi|228590842|gb|EEK48700.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 10876]
 gi|228602844|gb|EEK60324.1| DNA polymerase III, delta subunit [Bacillus cereus 172560W]
 gi|228701692|gb|EEL54182.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-2]
 gi|228805055|gb|EEM51650.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 336

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLIYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|65321696|ref|ZP_00394655.1| COG1466: DNA polymerase III, delta subunit [Bacillus anthracis str.
           A2012]
          Length = 336

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I      G   I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                  T + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEXTPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|127513859|ref|YP_001095056.1| DNA polymerase III, delta subunit [Shewanella loihica PV-4]
 gi|126639154|gb|ABO24797.1| DNA polymerase III, delta subunit [Shewanella loihica PV-4]
          Length = 343

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 114/318 (35%), Gaps = 10/318 (3%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70
            +  K L      ++ +G D  L  E   +          + F   ++   E   N    
Sbjct: 6   DQLAKQLSPLKPCYLIFGDDPWL-CETSKRAI--FDQAKREGFEERIVLTQETGFNWREL 62

Query: 71  WNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +E N+ SLF+ ++II +         +    L+ ++ +   + +++I   ++    T  
Sbjct: 63  QDEWNTMSLFASRRIIELHLPQAKPGSEGSSQLQSLMQQVNPDILLVITGPKLASEQTKS 122

Query: 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           K  ++     + I C           ++  +     +++ +A+Q+LL+   G+ +A+   
Sbjct: 123 KWFKQLDDKGVYIPCATPEGPQFQRWLQTRIREAGLNLTLDAQQLLLSLYEGNLLAADQA 182

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +Q L         IT + ++    D     + ++ +  +  +   A  +     A     
Sbjct: 183 IQLLVLLS-PSSQITSEQLQSYFEDQSRFSVFQLADCLLANQQEKAQHILAQLQAEGTAL 241

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL G  ++   L ++    + +    + +  +    I   ++ + Q +L   + + + 
Sbjct: 242 PILLWGQFKELTTLLQLK-QAQEAGTPLQSLWSQFR--IWDKRKGLYQGALSRLSLSQIE 298

Query: 308 ETLHKIDHRIHLARKKKY 325
             L          +++  
Sbjct: 299 TALASASKIELKLKQQGA 316


>gi|239827785|ref|YP_002950409.1| DNA polymerase III subunit delta [Geobacillus sp. WCH70]
 gi|239808078|gb|ACS25143.1| DNA polymerase III, delta subunit [Geobacillus sp. WCH70]
          Length = 344

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 128/324 (39%), Gaps = 18/324 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++  L+ E      + +       F++ V +  +     +    +  +     +
Sbjct: 17  LYLLYGTESFLLTETYELLVRTVLTEEEREFNVSVYDCEDTPVQTA--LEDAETFPFLGE 74

Query: 83  KKIILIEN-----LSTEKKV---LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           K++ILI+N        EK+V   L  LE  I+      I++      ++ +   + K+ +
Sbjct: 75  KRVILIKNPYFFTAEKEKEVEHDLKKLESYIMSPSPFSIVVFVGPYEKLDERKKITKLMK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +   V   S   +    L + I E        + + A   LL   G + +   NEL KL 
Sbjct: 135 EHAEVFVASPLAE--KELREWIVERAGQSGVMVEEHAIDTLLKLAGTNLMTLANELDKLI 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +     +I ++ V+ ++  T    +  ++    + +I +A+ +    L +      +L 
Sbjct: 193 LFVGPGGMIQQETVEKLVSRTLEQNVFVLVEKVTKRQIDDALQVFYDLLENNEEPLKILS 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+LL ++  +        ++I      N+ P +  +      ++++  +   + +
Sbjct: 253 LLAGQFRLLYQVKWLA-AKGYGQQQIASIL--NVHPFRIKLAMGQAALFSEEELTTVMRQ 309

Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336
           I    +   K   +++ ++ + +L
Sbjct: 310 IAEADYKM-KSGTMDRQLVMELLL 332


>gi|296333286|ref|ZP_06875739.1| DNA polymerase III subunit delta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675209|ref|YP_003866881.1| DNA polymerase III subunit delta [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149484|gb|EFG90380.1| DNA polymerase III subunit delta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413453|gb|ADM38572.1| DNA polymerase III subunit delta [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 347

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 122/311 (39%), Gaps = 30/311 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSL 79
           H V+  YG +  L+ E +++ ++ +       F+L V +   ++++       +  +   
Sbjct: 15  HPVYCLYGKETYLLQETVSRIRQTVIDQETKDFNLSVFD---LEEDPLDQAIADAETFPF 71

Query: 80  FSKKKIILIENLS---TEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLR 128
             ++++++++N S    EKK       +  LE  I       + ++ +   ++ +   L 
Sbjct: 72  MGERRLVIVKNPSFLTGEKKKEKIEHNVSALETYIQSPAPYTVFVLLAPYEKLDERKKLT 131

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESL-----LIGQKSISKEAKQILLANLGGDRIA 183
           K  +K   ++           L                QK+I  EA + L+  + G   +
Sbjct: 132 KALKKHAFMM-------EAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSS 184

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E+QKL ++      IT   VK ++  +    I E+IN  +  K   ++ +    L  
Sbjct: 185 IFQEIQKLCTFIGHREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQ 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 ++     +F+L+ +     E      ++I    +  + P +  +  +  R++++
Sbjct: 245 NEEPIKIMALISNQFRLILQTKYFAE-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSE 301

Query: 304 NLVRETLHKID 314
             +R  + ++ 
Sbjct: 302 GELRSIIEQLA 312


>gi|229163268|ref|ZP_04291223.1| DNA polymerase III, delta subunit [Bacillus cereus R309803]
 gi|228620331|gb|EEK77202.1| DNA polymerase III, delta subunit [Bacillus cereus R309803]
          Length = 336

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 122/322 (37%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LE  I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEGYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADIVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMEILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|153001822|ref|YP_001367503.1| DNA polymerase III subunit delta [Shewanella baltica OS185]
 gi|151366440|gb|ABS09440.1| DNA polymerase III, delta subunit [Shewanella baltica OS185]
          Length = 343

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 109/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L      ++ +G D  LI    + I QF K            V L   E   N 
Sbjct: 6   DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +    E  + SLFS K++I +         +    L+ ++     + ++II+  ++    
Sbjct: 60  NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +      + + C        M  ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQPDARAMLHSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         ++   +     D     + ++ +A +  K  +A  +        
Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++  LL  +    +    +   +  K    I   ++ + Q +L+  +  
Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGTALSALWSKHR--IWDKRKPLYQAALQRLSLE 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QLEHML 301


>gi|75763391|ref|ZP_00743124.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899491|ref|YP_002447902.1| DNA polymerase III, delta subunit [Bacillus cereus G9842]
 gi|228902849|ref|ZP_04066992.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 4222]
 gi|228923076|ref|ZP_04086368.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|74489120|gb|EAO52603.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218543358|gb|ACK95752.1| DNA polymerase III, delta subunit [Bacillus cereus G9842]
 gi|228836574|gb|EEM81923.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228856773|gb|EEN01290.1| DNA polymerase III, delta subunit [Bacillus thuringiensis IBL 4222]
          Length = 336

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|89895892|ref|YP_519379.1| hypothetical protein DSY3146 [Desulfitobacterium hafniense Y51]
 gi|89335340|dbj|BAE84935.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 332

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 90/255 (35%), Gaps = 10/255 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V ++YG ++  I E   Q  KN  +      S + + + +            N+ S F 
Sbjct: 18  PVNLWYGEERFFIQE-ALQLLKNSYLAQDPSGSGIEILSGKSTG-PEQIVEIANTVSFFG 75

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             K+I++E++      +   L+              ++  +  + +     K  EK  S+
Sbjct: 76  G-KLIIVEDIPYFQDGQGDALEPFFAYFENPNPGTCLVFLAQSVNRGRKFFKAIEKKGSI 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L     P  +      ++  L    K++  + K + L   G    A   EL KL+ Y   
Sbjct: 135 LEFGS-PKRQQEWSAWLDRELAARGKTMKPQVKALFLEWGGHQVGALSQELDKLALYVEG 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I  + V+ ++       + E+++A        A+      L     S  +L    ++
Sbjct: 194 -KEIRTEDVRSLVPQAVEATVFELLDAVAARSAKEAVQKLQQVLRQ-EHSLKVLTLLSRQ 251

Query: 258 FQLLEKIHIIKECSN 272
            +LL     +++   
Sbjct: 252 VRLLLGARAMRQQGR 266


>gi|42783450|ref|NP_980697.1| DNA polymerase III subunit delta [Bacillus cereus ATCC 10987]
 gi|42739379|gb|AAS43305.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|324328227|gb|ADY23487.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 336

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGDITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIMELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|146293959|ref|YP_001184383.1| DNA polymerase III subunit delta [Shewanella putrefaciens CN-32]
 gi|145565649|gb|ABP76584.1| DNA polymerase III, delta subunit [Shewanella putrefaciens CN-32]
 gi|319427335|gb|ADV55409.1| DNA polymerase III, delta subunit [Shewanella putrefaciens 200]
          Length = 343

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 101/295 (34%), Gaps = 16/295 (5%)

Query: 22  FVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
             ++ +G D  LI    + I Q  K            V L   E   N +    E  + S
Sbjct: 17  PCYLIFGDDPWLIETTKDQIRQLAKRQGFDEK-----VQL-IQETGFNWNDLTQEWQAMS 70

Query: 79  LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135
           LFS K+ I +         +    L+ ++     + ++II+  ++    T  K  +    
Sbjct: 71  LFSSKRQIELTLPQAKPGAEGSSTLQSLLQTPNPDMLLIIEGPKLSSEQTNSKWFKTLDA 130

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             + I C       LM  ++  L   +  +  +A+ +L +   G+ +A+   +Q L    
Sbjct: 131 QGMYIPCATPEGDQLMRWLDSRLQHFKLQLQNDARAMLYSLYEGNLLAADQAMQLLQLLS 190

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ++   +     D     + ++ +A +  K  +A  +             LL    
Sbjct: 191 -PTKPVSADELSHYFEDQSRFTVFQLSDALLLNKQQSAQHMLAQLNGEGTALPILLWTLF 249

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           ++   L      ++   I+   +  K    I   ++ + Q +L+      +   L
Sbjct: 250 KE-LNLLLNLKNEQAQGIALNTLWGKHR--IWDKRKPLYQAALQRLTLEQIEYML 301


>gi|229098794|ref|ZP_04229732.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-29]
 gi|229117820|ref|ZP_04247184.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-3]
 gi|228665617|gb|EEL21095.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-3]
 gi|228684638|gb|EEL38578.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-29]
          Length = 336

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++L+++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|229104954|ref|ZP_04235610.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-28]
 gi|228678448|gb|EEL32669.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-28]
          Length = 336

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++L+++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|254429732|ref|ZP_05043439.1| DNA polymerase III, delta subunit [Alcanivorax sp. DG881]
 gi|196195901|gb|EDX90860.1| DNA polymerase III, delta subunit [Alcanivorax sp. DG881]
          Length = 337

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 104/267 (38%), Gaps = 16/267 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +     ELI+  ++       D        + +   + +   NE  S SLF 
Sbjct: 18  PVYLVAGDEPLQQGELIDDLRRAARDQGFDERQRF---SSDTGIDWNALLNESQSMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKN----NTLRKIA 131
            ++I+  ++ +   +K     L +++         + +++I+ + + +     +   K  
Sbjct: 75  GRRILELVLNDKRPDKTGSQILRDVLAGLKGGASSDTLLLIRCSRLDRRKDWNSAWVKAV 134

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +       I  +P     L + ++E L       +++A  +L+    G+ +A+  E+ KL
Sbjct: 135 D--EMGAVIEVWPVEGKGLRNWLQERLTSRGLRANEDALALLIERSEGNLLAAAQEVDKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +    E+  +  + V+  + D+      ++  AT QG     + +     A  +    LL
Sbjct: 193 ALLV-ENGQVGPEDVQQAVGDSSRYSPFDLTEATAQGDSQRVMHIIQTLRAEGVEPPVLL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI 278
               +  +LL+ +        +  +++
Sbjct: 252 WALSRDIRLLDGMLGGGPPPRLPPQRV 278


>gi|258424014|ref|ZP_05686896.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9635]
 gi|257845635|gb|EEV69667.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9635]
          Length = 324

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 122/331 (36%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     +     AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRNKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|238790769|ref|ZP_04634528.1| DNA polymerase III subunit delta [Yersinia frederiksenii ATCC
           33641]
 gi|238721127|gb|EEQ12808.1| DNA polymerase III subunit delta [Yersinia frederiksenii ATCC
           33641]
          Length = 304

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 96/260 (36%), Gaps = 10/260 (3%)

Query: 74  INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLF+ ++ +L+   +      + + L ++      + ++I+++N++ K        
Sbjct: 28  CQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWF 87

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +    + + +SC       L   +          I   A Q+L     G+ +A    L++
Sbjct: 88  KALSKNGVFVSCQTPELAQLPRWVGTRAKSLNLEIDDAAIQLLCYCYEGNLLALSQALER 147

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS     D  +T   V+  + D         ++A + GK   A  +             L
Sbjct: 148 LSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVIL 206

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L    ++   L  +    E   +    +  +    +   +R ++ ++L+  +   +++ +
Sbjct: 207 LRTLQRELLQLLTLKRQLE--QVPLRTLFDQFR--VWQNRRPLMTQALQRLSMQQLQQAI 262

Query: 311 HKIDHRIHLARKKKYLEKNI 330
           H +       R K+   ++I
Sbjct: 263 HLLAQI--EVRLKQDYGQSI 280


>gi|282911224|ref|ZP_06319026.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282324919|gb|EFB55229.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|312437945|gb|ADQ77016.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 324

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDGLL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|30022402|ref|NP_834033.1| DNA polymerase III subunit delta [Bacillus cereus ATCC 14579]
 gi|218230783|ref|YP_002369132.1| DNA polymerase III subunit delta [Bacillus cereus B4264]
 gi|229146894|ref|ZP_04275258.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST24]
 gi|229152526|ref|ZP_04280716.1| DNA polymerase III, delta subunit [Bacillus cereus m1550]
 gi|296504816|ref|YP_003666516.1| DNA polymerase III subunit delta [Bacillus thuringiensis BMB171]
 gi|29897960|gb|AAP11234.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 14579]
 gi|218158740|gb|ACK58732.1| DNA polymerase III, delta subunit [Bacillus cereus B4264]
 gi|228630892|gb|EEK87531.1| DNA polymerase III, delta subunit [Bacillus cereus m1550]
 gi|228636493|gb|EEK92959.1| DNA polymerase III, delta subunit [Bacillus cereus BDRD-ST24]
 gi|296325868|gb|ADH08796.1| DNA polymerase III subunit delta [Bacillus thuringiensis BMB171]
          Length = 336

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|229111797|ref|ZP_04241343.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-15]
 gi|228671553|gb|EEL26851.1| DNA polymerase III, delta subunit [Bacillus cereus Rock1-15]
          Length = 336

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I   +          F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLIRTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|149182760|ref|ZP_01861224.1| hypothetical protein BSG1_17475 [Bacillus sp. SG-1]
 gi|148849526|gb|EDL63712.1| hypothetical protein BSG1_17475 [Bacillus sp. SG-1]
          Length = 350

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 123/336 (36%), Gaps = 18/336 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  LI E  ++            F+    +  E    + T   +  +     +
Sbjct: 22  IYLLYGKESFLINETQHKIVGQAISEEEMDFNFSTYDLEET--PVETAIEDAETFPFMGE 79

Query: 83  KKIILIEN---LSTEKK------VLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           ++++++ N   L+ EK        +   E+ +       I++I +   ++ +   + K  
Sbjct: 80  RRVVVLHNPVFLTAEKTREKVEHNIKKFEQYLASPSPYTILVISAPYEKLDERKKITKTL 139

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +K   V+       N+  L   + E        I + A  +LLA  G + +    E+ KL
Sbjct: 140 KKQAEVVEAK--KLNEKELRTWVRERTAANNVQIDESAIDLLLALAGTNLMMLTKEIDKL 197

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S Y  +   I E  V+ +   +    I  ++   +Q +  +A+ +    L        +L
Sbjct: 198 SLYVSDTSRIDESVVESLTARSLEQNIFALVEKVVQRRTEDALRIYYDLLKQNEEPIKIL 257

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                +F+L+ ++  +        ++ I    + + P +  +     + +    +   + 
Sbjct: 258 AVLSGQFRLIYQVKEL--ARRGYGQQKIASFLR-VHPFRVKLAAGQAKHFTDEQLSTIIE 314

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            +    +  +  +  ++ II   +  + + +  N  
Sbjct: 315 LLSQGDYEMKTGRQKKEMIIELFLFKLHEQSLSNAR 350


>gi|229075997|ref|ZP_04208970.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-18]
 gi|228707109|gb|EEL59309.1| DNA polymerase III, delta subunit [Bacillus cereus Rock4-18]
          Length = 336

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--SYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++L+++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLMKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQVQDVQKWIGARADEVHVHIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITPKLVTELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|228960592|ref|ZP_04122239.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799071|gb|EEM46041.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 336

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNTAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|196230721|ref|ZP_03129582.1| DNA polymerase III, delta subunit [Chthoniobacter flavus Ellin428]
 gi|196225062|gb|EDY19571.1| DNA polymerase III, delta subunit [Chthoniobacter flavus Ellin428]
          Length = 426

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 104/304 (34%), Gaps = 29/304 (9%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
            +F+         S  ++   GSD+  +  +  +    ++    D F+  +++ +    +
Sbjct: 46  QEFM--PVAKAKTSAQIYAVVGSDESEVKRVAREHADRMAPKGGDEFATDIIDGVADNAD 103

Query: 67  -----ISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKN----I 109
                I      + +   F  +K++ ++N              V + LE++         
Sbjct: 104 QAAGRIHQTIEALLTFPFFGGEKLVWLKNANFLADTPMGRAGGVTEALEKLAETLSGGMP 163

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEESLLIGQKSI 165
            +   ++ + ++ K  +  K   K   V       +     +     L  +         
Sbjct: 164 ESTRFLLSAIDVDKRRSFYKGLGKLGKVEVFDKVDASKSGWEEEAAALARQRAEDRGLQF 223

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINA 224
           S +A ++   + GGDR    NEL+KL  Y       ++ + V+D++  +    + E+ NA
Sbjct: 224 SGDALELFALSTGGDRRVMENELEKLDLYLGAARRAVSVEDVRDLVPLSRAGVVFELGNA 283

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
                +  ++ L D        +  +L   +     +  +  +    ++     + + ++
Sbjct: 284 LAARDLNRSLALLDQLFFQGETAIGILLVAI-----IPTVRSLLIAKDLMTRHKLSRPQQ 338

Query: 285 NIIP 288
               
Sbjct: 339 PFFF 342


>gi|49483834|ref|YP_041058.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|82751190|ref|YP_416931.1| DNA polymerase III subunit delta [Staphylococcus aureus RF122]
 gi|257425711|ref|ZP_05602135.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428372|ref|ZP_05604770.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257433697|ref|ZP_05610055.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436611|ref|ZP_05612655.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904168|ref|ZP_06312056.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905995|ref|ZP_06313850.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908906|ref|ZP_06316724.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282914393|ref|ZP_06322179.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916857|ref|ZP_06324615.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919362|ref|ZP_06327097.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924687|ref|ZP_06332355.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770662|ref|ZP_06343554.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958350|ref|ZP_06375801.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503467|ref|ZP_06667314.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510484|ref|ZP_06669190.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531024|ref|ZP_06671706.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428164|ref|ZP_06820796.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590870|ref|ZP_06949508.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241963|emb|CAG40658.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82656721|emb|CAI81148.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|257271405|gb|EEV03551.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275213|gb|EEV06700.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257281790|gb|EEV11927.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283962|gb|EEV14085.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313522|gb|EFB43917.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317172|gb|EFB47546.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319344|gb|EFB49696.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321574|gb|EFB51899.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282327170|gb|EFB57465.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331287|gb|EFB60801.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595786|gb|EFC00750.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460809|gb|EFC07899.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470865|emb|CAQ50076.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790499|gb|EFC29316.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920292|gb|EFD97358.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095133|gb|EFE25398.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466848|gb|EFF09368.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128522|gb|EFG58156.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575756|gb|EFH94472.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694868|gb|ADI98090.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|315195489|gb|EFU25876.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323438552|gb|EGA96299.1| DNA polymerase III subunit delta [Staphylococcus aureus O11]
 gi|323442791|gb|EGB00416.1| DNA polymerase III subunit delta [Staphylococcus aureus O46]
          Length = 324

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKSPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|46446734|ref|YP_008099.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400375|emb|CAF23824.1| hypothetical protein pc1100 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 343

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 113/270 (41%), Gaps = 6/270 (2%)

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            ++E+ S +LF+ K++  I+N    +K +++ LE+   +   +  +I+ +    K  +  
Sbjct: 70  LFSELYSHNLFADKRLFWIQNADKLKKNLIEALEKYFPQIPSSQYLILSAPSWNKQTSFY 129

Query: 129 KIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           K AEK   +L +      + +  L++   + L   +K I  +  Q+L+   G D      
Sbjct: 130 KAAEKEGIILELTEPKPWEKEKKLIEWASKQLSAKRKIIPYQVCQLLVKQTGLDSSLLIQ 189

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E++KL  Y  +   IT+Q +  I        I ++  A  +     AI++A   L     
Sbjct: 190 EIEKLLCYIGDRNEITQQDIIKICNYQPSDTIWQLGEALFKRDGLAAILIAQSLLTEGQS 249

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              LL     +FQ   + HI    +N    + I      +     +   +  + +  + +
Sbjct: 250 LLPLLRQIRSQFQ--TQFHICVMLANGKAAQEISHEFPYLKGNLLDRTIQQAQRYGLDSL 307

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           R+ +  ID+      K  + ++ ++ + ++
Sbjct: 308 RQGILFIDNTEMRV-KNSHADEKLLMELLM 336


>gi|295399239|ref|ZP_06809221.1| DNA polymerase III, delta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978705|gb|EFG54301.1| DNA polymerase III, delta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 340

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 131/325 (40%), Gaps = 18/325 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++  L+ E      + +       F++ V +  E     +    +  +     
Sbjct: 16  PLYLLYGTESFLLTETYELLIRTVLTEEEREFNVSVYDCEETPVQAA--LEDAETFPFLG 73

Query: 82  KKKIILIEN-----LSTEKKVLDCLEEI--IIKNICNHIIIIKSNE---IKKNNTLRKIA 131
           +K++I+++N        EK++   L+++   I +     I++       + +   + K+ 
Sbjct: 74  EKRVIIVKNPYFFTAEKEKEITHDLKKLESYITSPSPFSIVVFVGAYEKLDERKKITKLM 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           ++   V   +   +    L + + E +      + + A   LL   G + +   NEL KL
Sbjct: 134 KEHAEVFIANPLAE--KELREWMMERVRQNGAMMEENAVDALLQTAGTNLMTLANELDKL 191

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +     +I ++ V++++  T    +  ++    + +I  A+ +    L +      +L
Sbjct: 192 ALFVGPGGMIRQETVENLVSRTLEQNVFVLVEKVTKRQIAEALQVFYDLLENNEEPLKIL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                +F+LL ++  +        ++I    +  + P +  +      ++++  + + + 
Sbjct: 252 ALLANQFRLLYQVKWLA-AKGYGQQQIASILK--VHPFRIKLAMGQAALFSEEELMKAIQ 308

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           +I    +   K   +++ +I + +L
Sbjct: 309 QIAEADYEM-KSGAMDRQLIMELLL 332


>gi|317047300|ref|YP_004114948.1| DNA polymerase III subunit delta [Pantoea sp. At-9b]
 gi|316948917|gb|ADU68392.1| DNA polymerase III, delta subunit [Pantoea sp. At-9b]
          Length = 343

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 116/325 (35%), Gaps = 14/325 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  I   +   +  + L   +F     G++  LI E  +  +   +    +      L+A
Sbjct: 1   MIRIYPEQLSAQLREGLRACYF---LTGNEPLLIQESADAIRAASTAQGFEEHFSATLDA 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                +    +    S SLF++++ + +          + + L ++      + +++++ 
Sbjct: 58  QTNWDD---LFASCQSLSLFTQRQTLTLHFPENGPNAAMAEQLVKLASLLHSDILLVLRM 114

Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            ++ K        +      + + C    +  L   +       +  +   A Q+L    
Sbjct: 115 TKLTKAQENSAWFKALSAQAVLVPCQTPEQAQLPRWVMNRAKAMKLHVDDAAVQLLCYCY 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A    L++LS     D  +T   V++ + D         ++A + GK   A+ + 
Sbjct: 175 EGNLLALAQALERLSL-LWPDGKLTLPRVEEAVNDAAHFTPFHWVDALLAGKSKRALHIL 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                       LL    +   LL  +H+ +  +  +   ++ +    I   +R +  ++
Sbjct: 234 HQLEKEDSEVVILLRSLQR--DLLTLLHLQRHQAQQALRTLMDQQR--IWQNRRALFMDA 289

Query: 298 LRIWNKNLVRETLHKIDHRIHLARK 322
           L+  +   ++  +H +       ++
Sbjct: 290 LQRLDARRLQRAIHLLAEIELSMKQ 314


>gi|197334617|ref|YP_002155513.1| DNA polymerase III, delta subunit [Vibrio fischeri MJ11]
 gi|197316107|gb|ACH65554.1| DNA polymerase III, delta subunit [Vibrio fischeri MJ11]
          Length = 344

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 114/301 (37%), Gaps = 10/301 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G++  L  E ++  ++       +      L+    Q + +  ++   + SLFS +
Sbjct: 20  YLLFGNEPLLKQESLDAIRQAAFAQGFEEKHQFTLDK---QLDWNNVFDCTQALSLFSSR 76

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140
           +II +   +          L+E++     + I++++   + K     +  +  T + L I
Sbjct: 77  QIIELTIPDTGMTTAHTSKLKELVPTLHDDIILLLQGPRVNKAQESTQWFKALTQLGLFI 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C   +   L   I++           EA Q+L     G+ +A    L KL+     D L
Sbjct: 137 PCNTPDNQQLPRFIQQRCKKLNLKPDAEAIQMLAQWHEGNLLALAQSLDKLAL-LYPDGL 195

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   +++ +   +     ++++  + G+   A  +     +       LL    ++  L
Sbjct: 196 LTLIRIEEALNRNNHFTPFQLVDTLLSGQAKRAQRILRQLESEGTEVIILLRTLQKELLL 255

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L+           +   +  + +  +   +R + Q +L+  +   +++ +  +       
Sbjct: 256 LQTFQYSL-SQGEAMFTVFDRYK--VWQNRRALYQAALQRLSITQIKQLIRLLAQIEIAT 312

Query: 321 R 321
           +
Sbjct: 313 K 313


>gi|57651979|ref|YP_186483.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus COL]
 gi|87162125|ref|YP_494241.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195396|ref|YP_500200.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221701|ref|YP_001332523.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509815|ref|YP_001575474.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141141|ref|ZP_03565634.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733162|ref|ZP_04867327.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258450585|ref|ZP_05698647.1| DNA polymerase III subunit delta [Staphylococcus aureus A5948]
 gi|262051245|ref|ZP_06023469.1| hypothetical protein SA930_1676 [Staphylococcus aureus 930918-3]
 gi|284024645|ref|ZP_06379043.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848617|ref|ZP_06789363.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|304380824|ref|ZP_07363484.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|57286165|gb|AAW38259.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128099|gb|ABD22613.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202954|gb|ABD30764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374501|dbj|BAF67761.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368624|gb|ABX29595.1| possible DNA-directed DNA polymerase III delta subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253728918|gb|EES97647.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257861743|gb|EEV84542.1| DNA polymerase III subunit delta [Staphylococcus aureus A5948]
 gi|259160882|gb|EEW45902.1| hypothetical protein SA930_1676 [Staphylococcus aureus 930918-3]
 gi|269941076|emb|CBI49460.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|294824643|gb|EFG41066.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|302751416|gb|ADL65593.1| DNA polymerase III delta subunit [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340551|gb|EFM06485.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198716|gb|EFU29044.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140528|gb|EFW32382.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144065|gb|EFW35834.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314262|gb|AEB88675.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329733223|gb|EGG69560.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 324

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|302342847|ref|YP_003807376.1| DNA polymerase III, subunit delta [Desulfarculus baarsii DSM 2075]
 gi|301639460|gb|ADK84782.1| DNA polymerase III, delta subunit [Desulfarculus baarsii DSM 2075]
          Length = 349

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 113/333 (33%), Gaps = 14/333 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +  L+   +  F +  +   +   +    +A +     +       +     
Sbjct: 25  PLYGVFGEEDFLVGHGVEAFCQCPAFGPNAALNTERFHAADT--PPARVLESARTLPFLG 82

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           +++++L+ +    K   L      +     +  ++    ++       K+ ++   V   
Sbjct: 83  RRRLVLVLDADQYKAAQLGEFVGYLEDPPPSACLVFAGAKLDARTKFAKLLQQRGRVHVF 142

Query: 141 S-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +  YP     L   ++    +  K +S  A   L    G    A  +E++KLS Y  +  
Sbjct: 143 AKLYP---NQLPPWLQGRAKVRGKRLSASAAAFLAELAGLGLGALDSEVEKLSLYVGKRP 199

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I     + ++    +  I ++ +A     ++ A+   +   A       +L    + F+
Sbjct: 200 EIGLDDARAVLGGGRLSTIFDLTDAIAAADLHRALTAFNQLHALGEAPVRVLAMVQRMFR 259

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            + +   + E       ++ ++      P     L    R  +K  +   L ++      
Sbjct: 260 QVLEASRLLERGG-DERQVARQMRIP--PQAAQTLLGRARRESKTGLSARLARLLQADMA 316

Query: 320 ARKKKYLEKNIIFQTILYIAQ----TACKNNNF 348
            +     ++ I+ + I+ + +     A +  N 
Sbjct: 317 LKSSPATDRAIVERLIMDLCRMPSADARRGKNA 349


>gi|160876555|ref|YP_001555871.1| DNA polymerase III subunit delta [Shewanella baltica OS195]
 gi|160862077|gb|ABX50611.1| DNA polymerase III, delta subunit [Shewanella baltica OS195]
 gi|315268749|gb|ADT95602.1| DNA polymerase III, delta subunit [Shewanella baltica OS678]
          Length = 343

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 16/306 (5%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
            + +++L      ++ +G D  LI    + I QF K            V L   E   N 
Sbjct: 6   DQLSRHLNQLFPCYLIFGDDPWLIETTKDQIRQFAKRQGFDEK-----VQL-IQETGFNW 59

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +    E  + SLFS K++I +         +    L+ ++     + ++II+  ++    
Sbjct: 60  NDLTQEWQAMSLFSSKRLIELTLPQSKPGAEGSSTLQALLQTPNPDMLLIIEGPKLANEQ 119

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           T  K  +      + + C        M  ++  +   + ++  +A+ +L +   G+ +A+
Sbjct: 120 TNSKWFKTLDAHGMYLPCATPEGDQFMRWLDGRIKHFKLNLQADARAMLHSLYEGNLLAA 179

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              +Q L         ++   +     D     + ++ +A +  K  +A  +        
Sbjct: 180 DQAMQLLQLLS-PTNPVSADELSHYFEDQSRFTVFQLTDALLNNKQDSAQHMLAQLNGEG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++  LL  +    +   ++   +  K    I   ++ + Q +L+  +  
Sbjct: 239 TALPILLWALFKELGLLFNLKCE-QAQGVALSALWSKHR--IWDKRKPLYQAALQRLSLE 295

Query: 305 LVRETL 310
            +   L
Sbjct: 296 QLEHML 301


>gi|298245846|ref|ZP_06969652.1| DNA polymerase III, delta subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553327|gb|EFH87192.1| DNA polymerase III, delta subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 345

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 113/348 (32%), Gaps = 51/348 (14%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G D+    EL+ + ++         F            ++ T      +    S++
Sbjct: 3   YLLHGDDEFTSRELLKKLRQQS------DFGFNQDTYDGTTADLKTIMMASGTQPFLSEQ 56

Query: 84  KIILIENLSTEKKVL--------------------------------DCLEEIIIK---- 107
           ++++I+ L  +K+                                     E+ + +    
Sbjct: 57  RLVVIDGLPKKKRGESSTTSAAPQEEATKGARGKRSKKGAKGGALTRAAYEKALAEHVGQ 116

Query: 108 -NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166
                 +I+I    + K N L K AE+      +S  P     L   I          I+
Sbjct: 117 MPESTVLILIVEEALDKANPLVKAAEQHGKA-TLSTQPQGAQ-LERWITARARTLDVKIA 174

Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
            EA  +L   +G       NELQKL++Y      IT Q V+ +        I ++ +A  
Sbjct: 175 PEATALLANFIGNQLRLLANELQKLATYVGPGGTITVQEVRTLSAQVQEARIFDLTDALA 234

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286
           Q     A+ +    LA       L+     + + L  +  + +   +   ++        
Sbjct: 235 QKNRKQALNILHDLLADGEAPLKLIGLITSQVRTLLLVKELAQ-KGMRGGQVASTLGIAP 293

Query: 287 IPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYLEKNII 331
              ++ +    +  ++   +      L   D  +  +R +  +  +++
Sbjct: 294 FVAEKAL--RQVHNFSTAQLEHTYRQLLDTDAALKRSRLEPEMALDLL 339


>gi|258437418|ref|ZP_05689402.1| DNA polymerase III subunit delta [Staphylococcus aureus A9299]
 gi|257848623|gb|EEV72611.1| DNA polymerase III subunit delta [Staphylococcus aureus A9299]
          Length = 324

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMTHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|197284331|ref|YP_002150203.1| DNA polymerase III subunit delta [Proteus mirabilis HI4320]
 gi|227358525|ref|ZP_03842850.1| DNA polymerase III delta subunit [Proteus mirabilis ATCC 29906]
 gi|194681818|emb|CAR41073.1| DNA polymerase III delta subunit [Proteus mirabilis HI4320]
 gi|227161236|gb|EEI46310.1| DNA polymerase III delta subunit [Proteus mirabilis ATCC 29906]
          Length = 344

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 111/314 (35%), Gaps = 29/314 (9%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L+ E    I    K+   T H  F+L      +   + +  ++   S 
Sbjct: 18  RQSYLLWGNEPLLLQESQDAIQTVAKSQGFTEHYQFTL------DNSTDWNEIYSLCQSL 71

Query: 78  SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLFS+K+ IL+          + + L  +  +   + ++I+      + + L K  E   
Sbjct: 72  SLFSQKQSILLHLPENGPNAAMSEKLLRLSHELHEDLLLIL------RGHKLTKAQENSE 125

Query: 136 -------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                    + ++C       L + +          + ++  Q+L     G+ +A    +
Sbjct: 126 WFKTLSQQGIYVTCLTPELDKLPNWVARRAKQKGLELDEQGNQLLCYCYEGNLLALAQAI 185

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           ++L      D  +T   V+  + D         I+A + GK   A  +            
Sbjct: 186 ERLCL-LYPDGKLTLPRVEAAVNDASHFTAYHWIDALLAGKTQRAWHILQQLKREDTEPV 244

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            LL    ++   L  +H  +     S + +  +    I   +R I   +L+  +++ +  
Sbjct: 245 ILLRTLQRELMQLITLH--RSAKTASLKSVFDQHR--IWQNRRPIFTAALQRLSEHQLLT 300

Query: 309 TLHKIDHRIHLARK 322
            +  +       ++
Sbjct: 301 AMRLLTQIEITLKQ 314


>gi|288941021|ref|YP_003443261.1| DNA polymerase III subunit delta [Allochromatium vinosum DSM 180]
 gi|288896393|gb|ADC62229.1| DNA polymerase III, delta subunit [Allochromatium vinosum DSM 180]
          Length = 334

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 101/292 (34%), Gaps = 10/292 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +     E     ++       D   ++                  ++ SLFS
Sbjct: 18  PVYLICGDEPYQFGEAARLVREAARRAGFDEREILDTEGPF---QWGALAATADAMSLFS 74

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +++I +   +    K+  + +     +   +++++I +  + +       A++  S+  
Sbjct: 75  SRRLIELRAANGKIGKEGSEAIRAYCERPCPDNLLLILAPGMDRKELQSAWAKRVESIGA 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I  +P  +  L   + + L             +L     G+ +A+  E++KL     + 
Sbjct: 135 VIQVWPLKERELEAWLAQRLQSAGLQPGTGVAGLLAERSEGNLLAAAQEVEKLRL-LHDP 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    +   + D+    +  + +A + G       +     A       +L    ++ 
Sbjct: 194 GPLELDDLLGNLADSARFDLFALTDAALGGDRARVQRVLAVLRAEGTADVLVLWVLAREL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           ++L +       +  S + +  +       M++  +  +L+  +   +RE L
Sbjct: 254 RMLAEA-AGAVAARASLDAVYSRHRVPR--MRQETIGRALKRLSPGRLRELL 302


>gi|300715831|ref|YP_003740634.1| DNA polymerase III, delta subunit [Erwinia billingiae Eb661]
 gi|299061667|emb|CAX58783.1| DNA polymerase III, delta subunit [Erwinia billingiae Eb661]
          Length = 343

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 109/302 (36%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G++  L+ E  +  +             VV++A     +    ++   + SLF+ +
Sbjct: 21  YILAGNEPLLLQESQDAVRAAAQKQEFTEHFSVVIDAHT---DWDAIFSTCQALSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           + +L+          + + L  +      + ++I++++++ K        +    + + +
Sbjct: 78  QTLLLTLPENGPNAAMAEQLVTLSSLLHADILLILRASKLTKAQENSAWFKALSANAVIV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C    +  L   +       + S+   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 PCQTPEQAQLPRWVIARAKSLKLSVDDAAVQLLCYCYEGNLLALAQALERLSL-LWPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A  +     A +     LL    ++  +
Sbjct: 197 LTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRAQHILRQMQAEESEPVILLRTVQRELMM 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +             +  +    +   +R +  E+L+  +   + + +H +       
Sbjct: 257 LLTLQRQMVK--TPIRTLFDQHR--VWQNRRPLFSEALQRLSARQLSQAIHLLTRIELTL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|15927167|ref|NP_374700.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus N315]
 gi|13701385|dbj|BAB42679.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
          Length = 324

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 125/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N    +K I+    E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNL--YEKEIAPIVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|59711358|ref|YP_204134.1| DNA polymerase III subunit delta [Vibrio fischeri ES114]
 gi|59479459|gb|AAW85246.1| DNA polymerase III, delta subunit [Vibrio fischeri ES114]
          Length = 344

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 115/301 (38%), Gaps = 10/301 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G++  L  E ++  ++       +      L+    Q + +  ++   + SLFS +
Sbjct: 20  YLLFGNEPLLKQESLDAIRQAAFTQGFEEKHQFTLDK---QLDWNNVFDCTQALSLFSSR 76

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140
           +II +   +          L+E++     + I++++   + K     +  +  T + L I
Sbjct: 77  QIIELTIPDTGMTTAHTSKLKELVPTLHDDIILLLQGPRVNKAQENTQWFKALTQLGLFI 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C   +   L   I++     +     EA Q+L     G+ +A    L KL+     D L
Sbjct: 137 PCNTPDNQQLPRFIQQRCKKLKLKPDAEAIQMLAQWHEGNLLALAQSLDKLAL-LYPDGL 195

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   +++ +   +     ++++  + G+   A  +     +       LL    ++  L
Sbjct: 196 LTLIRIEEALNRNNHFTPFQLVDTLLSGQAKRAQRILRQLESEGTEVIILLRTLQKELLL 255

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L+           +   +  + +  +   +R + Q +L+  +   +++ +  +       
Sbjct: 256 LQTFQYSL-SQGEAMFTVFDRYK--VWQNRRALYQAALQRLSITQIKQLIRLLAQIEIAT 312

Query: 321 R 321
           +
Sbjct: 313 K 313


>gi|77919016|ref|YP_356831.1| DNA polymerase III subunit delta [Pelobacter carbinolicus DSM 2380]
 gi|77545099|gb|ABA88661.1| DNA polymerase III, delta subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 330

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 122/331 (36%), Gaps = 9/331 (2%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           ++K  ++  L   +F+ YG +   +   + Q            F+L + +  + +    +
Sbjct: 6   LKKRIRDKTLPALLFL-YGEETFFVERSLRQIIDATIPVEARDFNLQIFHGKDSRA--VS 62

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
             +   +  +FS  +++++ +        L+ +   +   +   I++   N+I       
Sbjct: 63  ILDTARTLPVFSPIRLVVVRDTQDVPAAELEQIIPYLSDAVPETILVFTGNKIDGRRKFY 122

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           ++ +KF +++      DN+  +   + +         ++EA  +    +G        EL
Sbjct: 123 QVFKKFGALVEFKKLYDNQ--IPSFVTDQSQDLGFDFTEEALALFCKRVGSHLQEIHGEL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL ++     +     V  ++ D+ V  + ++ +A  +  +  A+ L    LA  +   
Sbjct: 181 SKLLNFLGGRRVAEVADVMTVVSDSRVDSVFDLSDALGKRDVGEALRLLHRLLAEGIAPL 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L    + F+ L K H + +      EK + +    I P   + L    R +  +  R 
Sbjct: 241 LILAMITRHFRQLWKAHELLQ--QRVAEKDMAR-RIGINPYFVSGLVAQARRFPGHGFRG 297

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
               +       +        ++   +L +A
Sbjct: 298 IFEALLETDLALKSTGSSPSVVLESLVLRLA 328


>gi|15924577|ref|NP_372111.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|148268070|ref|YP_001247013.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394139|ref|YP_001316814.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979905|ref|YP_001442164.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315376|ref|ZP_04838589.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006372|ref|ZP_05144973.2| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793663|ref|ZP_05642642.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9781]
 gi|258411038|ref|ZP_05681318.1| DNA polymerase III subunit delta [Staphylococcus aureus A9763]
 gi|258420159|ref|ZP_05683114.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9719]
 gi|258443624|ref|ZP_05691963.1| DNA polymerase III subunit delta [Staphylococcus aureus A8115]
 gi|258446832|ref|ZP_05694986.1| DNA polymerase III subunit delta [Staphylococcus aureus A6300]
 gi|258448746|ref|ZP_05696858.1| DNA polymerase III subunit delta [Staphylococcus aureus A6224]
 gi|258453563|ref|ZP_05701541.1| DNA polymerase III subunit delta [Staphylococcus aureus A5937]
 gi|269203214|ref|YP_003282483.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893088|ref|ZP_06301322.1| DNA polymerase III, delta subunit [Staphylococcus aureus A8117]
 gi|282928220|ref|ZP_06335825.1| DNA polymerase III, delta subunit [Staphylococcus aureus A10102]
 gi|295406710|ref|ZP_06816515.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|296276609|ref|ZP_06859116.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245708|ref|ZP_06929573.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|14247358|dbj|BAB57749.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741139|gb|ABQ49437.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946591|gb|ABR52527.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722040|dbj|BAF78457.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787635|gb|EEV25975.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9781]
 gi|257840188|gb|EEV64652.1| DNA polymerase III subunit delta [Staphylococcus aureus A9763]
 gi|257843870|gb|EEV68264.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9719]
 gi|257851030|gb|EEV74973.1| DNA polymerase III subunit delta [Staphylococcus aureus A8115]
 gi|257854407|gb|EEV77356.1| DNA polymerase III subunit delta [Staphylococcus aureus A6300]
 gi|257858024|gb|EEV80913.1| DNA polymerase III subunit delta [Staphylococcus aureus A6224]
 gi|257864294|gb|EEV87044.1| DNA polymerase III subunit delta [Staphylococcus aureus A5937]
 gi|262075504|gb|ACY11477.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590027|gb|EFB95109.1| DNA polymerase III, delta subunit [Staphylococcus aureus A10102]
 gi|282764406|gb|EFC04532.1| DNA polymerase III, delta subunit [Staphylococcus aureus A8117]
 gi|285817269|gb|ADC37756.1| DNA polymerase III delta subunit [Staphylococcus aureus 04-02981]
 gi|294968457|gb|EFG44481.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297177359|gb|EFH36611.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|312829974|emb|CBX34816.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129865|gb|EFT85855.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727256|gb|EGG63712.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 324

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|21283267|ref|NP_646355.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486421|ref|YP_043642.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207694|ref|ZP_06924129.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911775|ref|ZP_07129218.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204707|dbj|BAB95403.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244864|emb|CAG43325.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887711|gb|EFH26609.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886021|gb|EFK81223.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 324

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 122/331 (36%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK   D       L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVNQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIIDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|88860572|ref|ZP_01135210.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudoalteromonas tunicata D2]
 gi|88817770|gb|EAR27587.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudoalteromonas tunicata D2]
          Length = 346

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 123/313 (39%), Gaps = 20/313 (6%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70
           Q  +K       V++  G +   + +   Q K        D   L+ L+    Q +    
Sbjct: 7   QLPSKLSQQLAPVYLVLGEEPFQVQQCCEQIKTAAKKQGFD--ELIRLSVDN-QFDWQEL 63

Query: 71  WNEINSTSLFSKKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK 123
               NS SLFS +KII + +L  +K        L+ +   +  + I+I+       +++K
Sbjct: 64  EQHFNSLSLFSDRKIIEL-DLGEQKAGTSGSKTLKWLAETSNPDCILILKGAKNGTDVQK 122

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
               + +       L + CY  +  HL+  + +     Q +++ +AK  LL +  G+ +A
Sbjct: 123 TAWFKAL---EAIGLFVPCYEISGNHLLTWLNQHCQTLQLNLAHDAKLFLLESTQGNLLA 179

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           +  EL+KLS       LI +  +  ++ +     I ++ +A + GK    + +       
Sbjct: 180 TYQELEKLSL-IYGAKLIGKHELAPVLLNQAKFDIFDLTDALLIGKSDKIVAILARLQKD 238

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL-QESLRIWN 302
               ++L     ++ Q L  +   K      +  I ++     +   +  + +++L   +
Sbjct: 239 NSELNSLAWAIAREAQQLLAMQ-QKRQQGEPYSTIFKQFN---VWKNKQTITEQALSRLS 294

Query: 303 KNLVRETLHKIDH 315
            + +   + ++  
Sbjct: 295 LSHLEVIISQLAQ 307


>gi|309790004|ref|ZP_07684579.1| DNA polymerase III, delta subunit [Oscillochloris trichoides DG6]
 gi|308227947|gb|EFO81600.1| DNA polymerase III, delta subunit [Oscillochloris trichoides DG6]
          Length = 315

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 116/303 (38%), Gaps = 12/303 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ +G D+    + + + +  I     D  ++  L+  +++ +         +    + 
Sbjct: 2   LYLLHGPDEYQRSQALLRMRAAIPADVAD-LNITYLDGRKLKLDA--LAAACEAFPFLAD 58

Query: 83  KKIILIENLSTEKKV---LDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +++++ +   + K     + L   + +      ++ ++S+E+ + + L    +K  SVL
Sbjct: 59  MRLVIVADALKQTKAGKEREDLRAYLERVPATCDLVFVESDEVDRRSILFTYLKKVGSVL 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
             +        L   + E        I   A Q L+  +GG+  A  NEL KL+SY    
Sbjct: 119 EFTPLQ--GSELTRWVYEQAQGLGVVIEPAATQRLIEFVGGESRAIINELAKLASYVGRG 176

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I    V+ ++ D     +   I+     ++  A+  A   L        +L    ++ 
Sbjct: 177 GKIRVAEVELLVADGQEQNLFSFIDDLSARRLGAALRGARMLLEDGQAPTYILFMLARQI 236

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           ++L  +  +      + E  ++  ++    + +  +++ +R ++   +     ++     
Sbjct: 237 RILLGVRELAARRMRADEIAVELGQRP--FVIKKAMEQ-VRGFDAATLDRLHDRLLELDL 293

Query: 319 LAR 321
             +
Sbjct: 294 ATK 296


>gi|330686109|gb|EGG97730.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           VCU121]
          Length = 324

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 111/304 (36%), Gaps = 18/304 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +  ++       T  D F+ +  N  E +        E  +  
Sbjct: 1   MSDNIITVYGEVPDLVEKKSSEMINKYLQTEKDDFNFIKFNLYETEITP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK      +  D L E + K   +++II +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYVFTGEKVTKELNQNTDQLIEFLEKYDGDNLIIFEVYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  +    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKALKKNGQLKKVEQMSEEE--IKKWIQSKLNENYKDIKQDALNLFIELTGVNFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L KL  +  +   I +  V  II  +    +  +     + +   AI L    +  K   
Sbjct: 177 LDKLMLFLGDRPTINKDDVHQIINRSLEQNVFLLTEYIQKRQKNKAIQLVKDLINMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      +  L     I      S ++I +    N+ P +  +    +R +    + 
Sbjct: 237 IKLLALITSNY-RLYYQCKILNQKGYSGQQIAKTV--NVHPYRVKLALGQVRHYQLEDLL 293

Query: 308 ETLH 311
             ++
Sbjct: 294 NIIN 297


>gi|303239326|ref|ZP_07325854.1| DNA polymerase III, delta subunit [Acetivibrio cellulolyticus CD2]
 gi|302593112|gb|EFL62832.1| DNA polymerase III, delta subunit [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 123/326 (37%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++FYG ++ L    +   +K I        + +VL        +    +   +  +FS
Sbjct: 17  NLYLFYGHEEFLKKYYLESIEKAILDNDLSMLNKIVLEGKF---EMQKIEDACETLPVFS 73

Query: 82  KKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           +KK++L++N          + ++   D L+  +       +++    EI K        +
Sbjct: 74  EKKLVLVKNSGVFKSGKEGAKQQSAKDDLQNYLKNVPAYTVVVFYEEEIDKRLKTVDAVK 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K   ++  +        L+  + + L   +K I+ E    L+           NE+ KL 
Sbjct: 134 KNGLIVEFAFQK--PAELVKWVTKVLKSNKKEITIEDASYLIEICEQGMTEILNEVNKLV 191

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  +   +T + ++ +   +    I ++ +A  +  I  A+ L +  +  + P   +L 
Sbjct: 192 MYVGDRTRVTIEDIEKVCTKSVKSRIFDLTDAVAEKNIDKALKLLNDMVILREPLPKILF 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH- 311
              ++ + + ++ ++     +S +      +  I P     +    + ++   ++E +  
Sbjct: 252 MITRQLRHVLEMKLLC-KEGLSVKDA--SAKIGITPYAGGKVSNQAKSFSIEKLKEGIKE 308

Query: 312 --KIDHRIHLARKKKYLEKNIIFQTI 335
             ++D  I   R    +   ++   +
Sbjct: 309 AFELDLAIKTGRINDRIAAELLINKL 334


>gi|91200404|emb|CAJ73450.1| similar to DNA polymerase III, delta subunit [Candidatus Kuenenia
           stuttgartiensis]
          Length = 330

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 111/302 (36%), Gaps = 9/302 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF- 80
            VF+ +G+++  I E +   K  +         ++ +   +        +NE+   S F 
Sbjct: 17  PVFVVFGNEEFFIKEAVTTIKAALIADNDTDPVVIEVGGNDTPA--PVIFNELRGRSFFQ 74

Query: 81  SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             KK++++ N     +K  D LE  + K   +  +I+      K   L K+AEK   V  
Sbjct: 75  KNKKLVIVINADNFVEKNKDSLESYLQKPSTHAHLILICAGWDKRIRLSKLAEKTGIVA- 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
             C    +  L   +       +K+++ +A Q L  ++G +       L+KLS Y     
Sbjct: 134 -DCQRIKEYQLPTWLMSRAKHYKKTMNPKAAQRLAGDVGNNLAILDMHLEKLSIYKDNKA 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I E  V  ++       I E+ +A  +     A+ + +  L     S  ++     + +
Sbjct: 193 TIDESDVDALVTADRNRTIFELTDAVARKNFPQALKILNQMLTHGENSVKIITLLAWQIR 252

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            + +              I  + +      K+    + +R + +N + +    +      
Sbjct: 253 RIWRAR-QLLAQGKDENSISSELQIAPFFKKK--FFDQVRDFTENDLMKKHASLLESDIQ 309

Query: 320 AR 321
           ++
Sbjct: 310 SK 311


>gi|92114466|ref|YP_574394.1| DNA polymerase III subunit delta [Chromohalobacter salexigens DSM
           3043]
 gi|91797556|gb|ABE59695.1| DNA polymerase III, delta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 352

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 109/305 (35%), Gaps = 11/305 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V+I  G +  +  E  +  +        +   ++ +                 S SLF
Sbjct: 17  HPVYIVAGDEPLIHMEACDAIRAAARQRGVEEREVLHVENGF---QWGRLTESAASMSLF 73

Query: 81  SKKKII--LIENLSTEKKVLDCLEEII-IKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           +  K+I   +   S  ++    L+         + I++I S  + +        +    +
Sbjct: 74  ASSKLIELRLGGQSPGQEGAKALDAYARQAKDSDDILLISSARLDRRAQSSAWFKALDKI 133

Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + +  +P +   L   + +       S+  +A ++L     G+ +A+  ELQKL+    
Sbjct: 134 GVFVPVWPVDHQRLHFWVRDRASRHGLSLDMDAARLLGERTEGNLLAADQELQKLALLYP 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  Q +   + D+    +  +I+A ++G+      +        + +  +L    +
Sbjct: 194 ANARLDTQAIAGGVEDSARYDVFTLIDACLRGERVRVSRIVRGLRGEGVEAPVVLWALTR 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           + ++   +    +    S +   +     I   +R + Q++L       + + L    ++
Sbjct: 254 ELRIFLSLAQHLD-QGQSLDHACKAQRPPIPDKRRPLYQQALNRMPLKRLHKLLLFAQRL 312

Query: 314 DHRIH 318
           D  I 
Sbjct: 313 DLAIK 317


>gi|228941490|ref|ZP_04104040.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974420|ref|ZP_04134988.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981015|ref|ZP_04141317.1| DNA polymerase III, delta subunit [Bacillus thuringiensis Bt407]
 gi|228778675|gb|EEM26940.1| DNA polymerase III, delta subunit [Bacillus thuringiensis Bt407]
 gi|228785256|gb|EEM33267.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818140|gb|EEM64215.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942106|gb|AEA18002.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 336

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 123/321 (38%), Gaps = 13/321 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++   I E I              F++V  +  E    +     +  +   F +
Sbjct: 16  LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73

Query: 83  KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           +K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +       
Sbjct: 74  RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKK 133

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +         +   I          I   A  +LL  +G +      E+ KL+ Y 
Sbjct: 134 TADVVEANAMQVQDVQKWIIARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYV 193

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT + V +++  +    +  +    ++  I  A+ + D     +     LL   +
Sbjct: 194 GMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMRILDGLFTQQEEPIKLLALLV 253

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++  
Sbjct: 254 SQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAE 310

Query: 316 RIHLARKKKYLEKNIIFQTIL 336
             + + K   ++K ++ +  L
Sbjct: 311 ADY-SMKTGKMDKKLVLEFFL 330


>gi|291616681|ref|YP_003519423.1| HolA [Pantoea ananatis LMG 20103]
 gi|291151711|gb|ADD76295.1| HolA [Pantoea ananatis LMG 20103]
          Length = 343

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 113/302 (37%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  + +      +      L+A   Q +  + +    S SLF+++
Sbjct: 21  YLLTGNEPLLLQESADAIRASALAQGFEEHLSFTLDA---QTDWDSLFMSCQSLSLFAQR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           + + ++         + + L ++      + ++I +  ++ K        +      + +
Sbjct: 78  QTLTLQFPENGPNAAIAEQLIKLAPLLHADILLICRMAKLSKAQENSAWFKALSAHAVLV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C    +  L   +       +  I   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 PCQTPEQAQLPRWVVSRAKNLKLDIDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A+ +       +     LL    +    
Sbjct: 197 LTLPRVEAAVSDAAHFTPYHWVDALLGGKSRRALHILQQLEREESEVAILLRTLQRDLMT 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +H+ +  S      ++ +    I   +RN+  E+L+  + + +++ +H +       
Sbjct: 257 L--LHLQRHQSQQPLRTLMDQQR--IWQNRRNLFTEALQRLDASRLQQAIHLLMQIELTL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|256821551|ref|YP_003145514.1| DNA polymerase III subunit delta [Kangiella koreensis DSM 16069]
 gi|256795090|gb|ACV25746.1| DNA polymerase III, delta subunit [Kangiella koreensis DSM 16069]
          Length = 364

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 114/287 (39%), Gaps = 15/287 (5%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           KNL   + V++  G +     E ++  +            L+    +E     +   ++ 
Sbjct: 10  KNLNTLYPVYLVAGDEPLQKMEAVDAIRAYCKQQ-----GLLERQIIEEAGTSNPLTDQA 64

Query: 75  NSTSLFSKKKII-LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL--RKIA 131
            + SLF++ +++    + S +K   + ++  I     + +++I + ++     L   K  
Sbjct: 65  GTMSLFAESRLLEWRFDKSIKKAHGEFIQSFINSEPQD-VLLITAPKLSSEKRLAWYKTV 123

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           E     L +  +P     L + +         ++  +A   L+    G+ +A++ +LQ L
Sbjct: 124 E--QKGLVVEAWPVPAERLGNWLSTRARKLGVALEPDALATLIERCEGNLLAAQQDLQML 181

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S        ++  ++K+ + D     + E+ +A + G+   A+ +     A  +     +
Sbjct: 182 SLLSDGQP-VSSHNIKEYVGDNARYSVYELSDACLSGQTDRALRMLATLQAEGVYPLVPI 240

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
           +  L++ QLL            +   I+Q     + P ++ ILQ ++
Sbjct: 241 NQLLRECQLLADWAEKM-AKGETLANIMQSQR--VWPKRQKILQVAM 284


>gi|319779338|ref|YP_004130251.1| DNA polymerase III delta subunit [Taylorella equigenitalis MCE9]
 gi|317109362|gb|ADU92108.1| DNA polymerase III delta subunit [Taylorella equigenitalis MCE9]
          Length = 295

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 99/254 (38%), Gaps = 13/254 (5%)

Query: 70  FWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIII----KNICNHIIIIKSNEIKK 123
             N + S SLFS+KKI+ I   +    KK    L ++          +  +I+   ++ K
Sbjct: 12  VLNHLQSNSLFSEKKILEISVPTGKFGKKGGPTLAKLAEYIDTHKPDDICVILSIPKLDK 71

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKI-HLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                K      S+  +   P+ K   L     + +    ++I  EA  +L+  + G+ +
Sbjct: 72  KTQQTKWYVGIKSIATLIEIPNLKRQDLPAWARKLIKANNQTIEDEALMLLIDKIEGNIV 131

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A++ E+ KL+    +   +T + V+  + D+    I ++  + + G +  ++ +      
Sbjct: 132 AAQQEINKLALVAGKGANLTLETVRASVADSARYDIFQLTESILLGNVSRSLKILQGLKQ 191

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++ ++L K+ +  +    S   ++ +    I         ++L   N
Sbjct: 192 EGSVIPQLLPMITREIRILYKL-VQAQVGGKSINSVLNELR--IFSSFHQRYMQALSRLN 248

Query: 303 KNLVRETLHKIDHR 316
              +   +  + H 
Sbjct: 249 LPKI---MGLLQHA 259


>gi|296111683|ref|YP_003622065.1| hypothetical protein LKI_07785 [Leuconostoc kimchii IMSNU 11154]
 gi|295833215|gb|ADG41096.1| hypothetical protein LKI_07785 [Leuconostoc kimchii IMSNU 11154]
          Length = 332

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 118/303 (38%), Gaps = 21/303 (6%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
            KN  L++F  I  G ++ LI        K +        +    +     +++    N+
Sbjct: 10  IKNQALANFYVIL-GEEEALIQ-RAQSEFKQLIQPLDREMNYAQFDLS--IQSLEDVIND 65

Query: 74  INSTSLFSKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KN 124
             S   F ++++++++N            +      E++ K +  +I+ +  N++K  K 
Sbjct: 66  ATSMPFFGERRVVVVQNPDFLTAKGKVSDQTQVQFLELLEKPVSENIVAVFINDLKIDKR 125

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             + K+  K+   + +     N+      + + L      I  +A Q L         A 
Sbjct: 126 KKITKMLLKYAESIDLP--ALNERQAQQAVSKELEARAYRIDPDALQELTLRTNAHYTAM 183

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +NEL KL +       I  Q V  ++  T    + ++++A +  +   A+ +    L + 
Sbjct: 184 QNELPKLVAQATHTKHIQLQAVSALVPKTLTANVFDLVDAVMTRQTKKALTIYRDLLQNG 243

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            P+  +      +F+LL +I  +K       +++       I P +  + ++ L+ +  +
Sbjct: 244 EPALRVNAVLTGQFRLLLQIAGLKGTEQDMSKQL------GIHPYRVKLARQMLKKYALS 297

Query: 305 LVR 307
            +R
Sbjct: 298 SLR 300


>gi|229113620|ref|ZP_04243067.1| hypothetical protein bcere0018_57900 [Bacillus cereus Rock1-15]
 gi|228669816|gb|EEL25212.1| hypothetical protein bcere0018_57900 [Bacillus cereus Rock1-15]
          Length = 331

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 116/303 (38%), Gaps = 12/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L+ + + +  +  + + ++  +++  +  E  + I    NE    S F 
Sbjct: 2   PTYVMYGKETYLLEDKVKEIVRGFTNSTNEDLNVIEFDMEE--ETIQAAINEAEEYSFFG 59

Query: 82  KKKIILIENL-----STEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
             KI++  N         K+V   +DC+   + KN+ + ++I+  +  K +   + + E 
Sbjct: 60  GTKIVITRNAKFLTTDNNKEVNHDVDCILSFLEKNMEDSVLILTVDYEKLDQRKKIVKEL 119

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               +       N+      I          IS E  Q L+ ++G D    +NE+ KL  
Sbjct: 120 KKKAIIFEAKALNQAETATWILNYAKDKNIQISNELVQELIVSIGCDLRCLKNEVDKLYV 179

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y   +  IT   V  +   +    I  +    +    + AI L +  +  K     +L  
Sbjct: 180 YSNGEKEITSDAVAAVTVKSLEQSIFNLSEYLLSHDTHKAIGLFNELILKKHNPIQILAT 239

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            + KF +L KI +++  +       I      ++   +  ++E     +K+ +   L  +
Sbjct: 240 LIYKFDMLFKIKVLQNGTKDKELMGIIGCHPYVLQKSKEQIKEF--NLSKDDLGNILCLL 297

Query: 314 DHR 316
              
Sbjct: 298 TEA 300


>gi|322383622|ref|ZP_08057373.1| DNA polymerase III subunit delta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151834|gb|EFX44777.1| DNA polymerase III subunit delta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 348

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 120/305 (39%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG++  LI + I +  + +       F++   +  E    +     +  +    +
Sbjct: 24  PVYLCYGTEPYLIDQFIGKLTEALIDPDQREFAVSKFDLTET--PVQDIIADAETLPFMA 81

Query: 82  KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            +K++ ++  +              LD L   +   +   +++  + + ++ +   + K+
Sbjct: 82  PRKLVYVQRSALFTAAKENNKLDHDLDKLTAYMKAPVDYTVLVFRVDAEKLDERKKIVKL 141

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + + C P +  HL   I++     + + S EA + L+    G   +   E+ K
Sbjct: 142 V--KQNGVIVPCAPLSVDHLQAWIKKQATEAKFTFSPEAVEQLIVYTDGHLQSISKEIAK 199

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS Y  +   +T + +  ++  T    +  ++   +Q ++  A  L +  +  K     L
Sbjct: 200 LSLYVGKGGTVTGELIDQMVPRTAEQNVFMLVEHVVQKRMNKAFDLLEDLIRQKEEPIKL 259

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +    ++++++ ++  +      S ++   +    + P    I  +  + +++  + + +
Sbjct: 260 VMLIARQYRIMLQVKALS-KQGYSHQQTASQIG--LHPYAVKIADQQGKTYSEEQLSQVI 316

Query: 311 HKIDH 315
             +  
Sbjct: 317 SALAD 321


>gi|167461404|ref|ZP_02326493.1| DNA polymerase III subunit delta [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 341

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 120/305 (39%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG++  LI + I +  + +       F++   +  E    +     +  +    +
Sbjct: 17  PVYLCYGTEPYLIDQFIGKLTEALIDPDQREFAVSKFDLTET--PVQDIIADAETLPFMA 74

Query: 82  KKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            +K++ ++  +              LD L   +   +   +++  + + ++ +   + K+
Sbjct: 75  PRKLVYVQRSALFTAAKENNKLDHDLDKLTAYMKAPVDYTVLVFRVDAEKLDERKKIVKL 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + + C P +  HL   I++     + + S EA + L+    G   +   E+ K
Sbjct: 135 V--KQNGVIVPCAPLSVDHLQAWIKKQATEAKFTFSPEAVEQLIVYTDGHLQSISKEIAK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS Y  +   +T + +  ++  T    +  ++   +Q ++  A  L +  +  K     L
Sbjct: 193 LSLYVGKGGTVTGELIDQMVPRTAEQNVFMLVEHVVQKRMNKAFDLLEDLIRQKEEPIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +    ++++++ ++  +      S ++   +    + P    I  +  + +++  + + +
Sbjct: 253 VMLIARQYRIMLQVKALS-KQGYSHQQTASQIG--LHPYAVKIADQQGKTYSEEQLSQVI 309

Query: 311 HKIDH 315
             +  
Sbjct: 310 SALAD 314


>gi|120597868|ref|YP_962442.1| DNA polymerase III subunit delta [Shewanella sp. W3-18-1]
 gi|120557961|gb|ABM23888.1| DNA polymerase III, delta subunit [Shewanella sp. W3-18-1]
          Length = 343

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 16/295 (5%)

Query: 22  FVFIFYGSDKGLIF---ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
             ++ +G D  LI    + I Q  K            V L   E   N +    E  + S
Sbjct: 17  PCYLIFGDDPWLIETTKDQIRQLAKRQGFDEK-----VQL-IQETGFNWNDLTQEWQAMS 70

Query: 79  LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135
           LFS K+ I +         +    L+ ++     + ++II+  ++    T  K  +    
Sbjct: 71  LFSSKRQIELTLPQAKPGAEGSSTLQSLLQTPNPDMLLIIEGPKLSSEQTNSKWFKTLDA 130

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             + I C        M  ++  L   +  +  +A+ +L +   G+ +A+   +Q L    
Sbjct: 131 QGMYIPCATPEGDQFMRWLDSRLQHFKLQLQNDARAMLYSLYEGNLLAADQAMQLLQLLS 190

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ++   +     D     + ++ +A +  K  +A+ +             LL    
Sbjct: 191 -PTKPVSADELSHYFEDQSRFTVFQLSDALLLNKQQSALHMLAQLNGEGTALPILLWTLF 249

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           ++  LL  +   ++   I+   +  K    I   ++ + Q +L+      +   L
Sbjct: 250 KELNLLLNL-KNEQAQGIALNTLWGKHR--IWDKRKPLYQAALQRLTLEQIEYML 301


>gi|312891711|ref|ZP_07751220.1| DNA polymerase III, delta subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311295794|gb|EFQ72954.1| DNA polymerase III, delta subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 340

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 116/313 (37%), Gaps = 23/313 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +   I  + N  +  +       F+  V+   +   ++ T  N      + +
Sbjct: 17  PLYLLHGDEPYFIDLIGNYIEHKVLSEAERGFNQTVVYGKDT--DLMTVLNAAKRYPMMA 74

Query: 82  KKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIA 131
             ++++++          + +KK +D L   + K + + I++   K  +I K   L K  
Sbjct: 75  DYQVVMVKEAQDMKWGKETDDKKSIDPLLSYLEKPLPSTILVFCYKYGKIDKRKKLYKAI 134

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           EK   +   +   DN   +   IE  +      I+ +A  +L   LG D     NEL+KL
Sbjct: 135 EKNGLIFDSAELYDN--KIPGWIEGFVSDKGYRINPQASALLAEYLGNDLSKIANELEKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249
                    IT + ++D I  +    + E+  A  +  +     + ++F A+    P   
Sbjct: 193 MLNVNAGQEITSKEIQDNIGISKEYNVFELQTALGRRDVVKVNRIINYFEANPKANPMVV 252

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRE 308
           +L      F  + + H   +    S + + +               +++ R +N     +
Sbjct: 253 VLGTLNNYFSKVLRYHYAAD---KSPQGLARDLGVSPYFVKD---YEQAARTFNYGKTMQ 306

Query: 309 TLHKIDHRIHLAR 321
            +  +      ++
Sbjct: 307 VISLLREYDLKSK 319


>gi|21232048|ref|NP_637965.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767825|ref|YP_242587.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113788|gb|AAM41889.1| DNA polymerase III delta subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573157|gb|AAY48567.1| DNA polymerase III delta subunit [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 342

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 114/332 (34%), Gaps = 33/332 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGISEREVFDADGREF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   S    K   + +         + +++I +N+  K +   K A+    +  
Sbjct: 76  PRRLVEVRMPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +P     L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWPIKPHELSDWIERRLRAQGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++  + ++ ++ D     +  +   T  G+    + +     A      AL+   +++ 
Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAETTFSGQPAAVVRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIWNK--------N 304
                +    +    +    ++     I   ++   + +L      R W +        +
Sbjct: 254 LRTASL-AKVQAGGGNLGAEMKAQG--IWESRQAPFKRALQRHPEPRRWERFVAEAGLVD 310

Query: 305 LVRE---------TLHKIDHRIHLARKKKYLE 327
            + +          L ++   +  AR  + L 
Sbjct: 311 RMAKGRAEGDPWVALERLLVAVAEARAVRLLA 342


>gi|238786084|ref|ZP_04630042.1| DNA polymerase III subunit delta [Yersinia bercovieri ATCC 43970]
 gi|238713023|gb|EEQ05077.1| DNA polymerase III subunit delta [Yersinia bercovieri ATCC 43970]
          Length = 314

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 102/266 (38%), Gaps = 10/266 (3%)

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
            + ++   + SLF+ ++ +L+          + + L ++      + ++I+++N++ K  
Sbjct: 32  ESIFSLCQALSLFASRQTLLLSFPESGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 91

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
                 +   T+ + +SC P  +  L   +          I   A Q+L     G+ +A 
Sbjct: 92  ENSAWFKALSTNGVLVSCQPPEQAQLPRWVSTRAKSLNLDIDDAAIQLLCYCYEGNLLAL 151

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              L++LS     D  +T   V+  + D         ++A + GK   A  +        
Sbjct: 152 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 210

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++   L  +    +   +    +  + +  +   +R ++ ++L+  +  
Sbjct: 211 SEPIILLRTLQRELLQLLTLKRRMD--QVPLRALFDQFK--VWQNRRPMMTQALQRLSMQ 266

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330
            +++ +H +       R K+   ++I
Sbjct: 267 QLQQAVHLLTQ--MEIRLKQDYGQSI 290


>gi|242373891|ref|ZP_04819465.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           M23864:W1]
 gi|242348445|gb|EES40047.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           M23864:W1]
          Length = 324

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 121/333 (36%), Gaps = 22/333 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +  ++          D F+ V  N    + +++    E  +  
Sbjct: 1   MSDNIVAIYGEVPELVEKKSSEIVNQYLGQDKDDFNFVKFNM--YENDLTPIIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK I+++N    + EK         + L E I K    ++II +   N++ +   L
Sbjct: 59  FFSDKKAIVVKNAYVFTGEKVTKELNHSAEQLMEFIEKYDGENLIIFEVYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K+  +  +    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKSLKKYAQLKKVEQMSEEE--IKKWIQRKLNENYKDIKQDALNLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL  +  +   I +  V  II  +    +  +     +G+   A+ L +  +  K   
Sbjct: 177 LEKLMLFLGDRPTINKDDVNQIINRSLEQNVFLLTEFIQKGRKNKAVQLVNDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
             LL      ++L  +  I+ +         K +        P +  +     R +  N 
Sbjct: 237 IKLLALITSNYRLYYQCKILGQKGYSGQQIAKTVNA-----HPYRVKLALNQARNYQLND 291

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           +   +       +  +     ++ I+   IL +
Sbjct: 292 LLNIIDSCAETDYKLKSSYMDKQLILELFILSL 324


>gi|313897337|ref|ZP_07830880.1| DNA polymerase III, delta subunit [Clostridium sp. HGF2]
 gi|312957707|gb|EFR39332.1| DNA polymerase III, delta subunit [Clostridium sp. HGF2]
          Length = 319

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 121/327 (37%), Gaps = 16/327 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG ++ L+ E + +  ++     +D   L  L       ++     +  +   FS  
Sbjct: 3   YVLYGEEQYLLQESLTRIVRSHVPDAND---LNKLVYDADTTDLDVILEDAMTIPFFSDC 59

Query: 84  KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           KIIL+ +      + E  V     E  + +     +++   + +K +  +KI +K   + 
Sbjct: 60  KIILVYHANFLSAANEHAVDTAALERYLDDPLESTVLVLIGDFEKLDARKKIVKKVQKTC 119

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             +     ++      ++E +      I   A Q LL  L  D    + E++KL  Y   
Sbjct: 120 KVLQYRKLDEQGKQSYVQEQVKKRSLQIEPSAMQALLRRLPLDIRTIQTEMEKLELY--- 176

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             +I+   V+ ++       + +++NA +   +  +  +          +  L+     +
Sbjct: 177 GGVISSDVVERLVTRPLEEDVFQLVNAVVDRDLRKSFHMWQDLCVLNKDAIYLIALLAAQ 236

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F+ L ++  +        + I  + +    P +  +  ++ +      +   L ++   +
Sbjct: 237 FRFLYEVKALM-LHGKGKDAIKDELKA--HPYRVQLAMKTAQRLGIGYLMHILEQL-ATL 292

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344
               K   L+K + F+  L   Q   +
Sbjct: 293 DQNMKAGRLDKKLGFEMFLLGIQGVRQ 319


>gi|152996928|ref|YP_001341763.1| DNA polymerase III subunit delta [Marinomonas sp. MWYL1]
 gi|150837852|gb|ABR71828.1| DNA polymerase III, delta subunit [Marinomonas sp. MWYL1]
          Length = 342

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 114/280 (40%), Gaps = 8/280 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +  L  E  +  +K       D     V +A    ++     NE  S SLFS
Sbjct: 18  PIYIISGDEVLLCQEAADSIRKAAQHHNIDERLRFVADAQFDWQD---VINENQSLSLFS 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAI 140
            +++  I+     +K    L ++      ++II++   +I       K   +  +  + +
Sbjct: 75  TRRMFDIQIDKMGEKHSKALAQLSQSLSEDNIILLTLPKIDARTQKAKWFTQLESQGVFV 134

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
             +P +   L   +++       S++++A  ++     G+ +A   EL+KL+    + + 
Sbjct: 135 QIWPIDANRLPAWVQQRAQTLDLSLTRDAASMICERGEGNLLALSQELEKLALMHGQGVQ 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I  + V + + D+    I ++ +  + GK  +++      L   + +  +L  F ++ Q 
Sbjct: 195 IDAEKVAESVADSSRYSIYDLSDRLLMGKAKDSMHCLHQLLGEGVEASIILWLFNREIQT 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L  +    + S  SF++  Q  +  I   +    + ++  
Sbjct: 255 LANLLQSMQSS--SFKQACQSEK--IWDKRVPFYESAMSR 290


>gi|159900773|ref|YP_001547020.1| DNA polymerase III subunit delta [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893812|gb|ABX06892.1| DNA polymerase III, delta subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 323

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 114/299 (38%), Gaps = 17/299 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++F+G D       IN   K         F++VVL+   I+ N      E     +F  
Sbjct: 2   LYLFFGPDDYTRQATINVL-KAAFPPDAAAFNVVVLHGKSIKLNEVRTACEAY--PVFHD 58

Query: 83  KKIILIENL---STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-----KF 134
           ++++++ +L   +   ++ D L+ ++ +      +++  ++   ++ L  + +     K 
Sbjct: 59  RRLVIVHDLLKHAKSAEMRDGLKSLVQRLPSTTDLVLNESD-APDSRLSVVKDIQALVKT 117

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                          L+  +++        +  +A Q L   +G D     NE+ KL++Y
Sbjct: 118 KQAEQREFNLREGNALIAWMQQEAQSNGVQLRPDAAQHLANYVGSDGWMLHNEIAKLAAY 177

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             ++  I+ + V  ++ D     +   I+A    +   A+   +  LA       +L   
Sbjct: 178 VGQNGTISMREVDLLVADETETNLFNFIDALSTRRGAAAVQGLNGLLADDAAPLYILTMI 237

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            ++     ++ +  + +       + K       + R   +++ R ++   +R    ++
Sbjct: 238 ARQA----RLMLAAQSAGRVAPDELAKLLGQKPFVARKAAEQA-RNFSPTELRMLHERV 291


>gi|241667450|ref|ZP_04755028.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875998|ref|ZP_05248708.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842019|gb|EET20433.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 325

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 114/258 (44%), Gaps = 20/258 (7%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN    + +F+  G +      +I ++ +QF  K+  I+YHD            ++N+  
Sbjct: 11  KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHDL----------NEQNLDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            + E++S SLFS  K+I    +   +KK+   L + +I    N  +++ S  +KK NT  
Sbjct: 61  LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           K  +      + IS +  N  + +++I+        S+++ A Q+L+    G+ IAS+  
Sbjct: 120 KWFQSLEHRAIHISIFNPNIHNAINIIDYEAKQLGLSLTQPAIQLLVQKTEGNLIASKQI 179

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++ LS          E  ++  I +     + ++  A +  +   A+ + +  L      
Sbjct: 180 IKLLS--RQSTQTYDENTIRPFIHEHANFDVFDLSEALLSQQKTKALKILNSILTENDKP 237

Query: 248 HALLHGFLQKFQLLEKIH 265
             +L    ++ +++ ++ 
Sbjct: 238 PLVLWAIKRELRIISQLK 255


>gi|163847973|ref|YP_001636017.1| DNA polymerase III subunit delta [Chloroflexus aurantiacus J-10-fl]
 gi|222525854|ref|YP_002570325.1| DNA polymerase III subunit delta [Chloroflexus sp. Y-400-fl]
 gi|163669262|gb|ABY35628.1| DNA polymerase III, delta subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449733|gb|ACM53999.1| DNA polymerase III, delta subunit [Chloroflexus sp. Y-400-fl]
          Length = 323

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 115/306 (37%), Gaps = 15/306 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++FYG ++    E + + +  +     D  ++ VL+  ++   I        +    ++
Sbjct: 2   IYLFYGPNELARSEAVAELRAGLPAEVAD-LNVSVLDGRKLT--IEQLVAACEAHPFLAE 58

Query: 83  KKIILIENL---STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVL 138
           ++++++ +    S   K  + L     +      ++ ++  E+ + + L     K   V 
Sbjct: 59  RRLVIVYDALKHSKAGKGREELRSYCERVPATCDLVFVEQEEVDRRHLLFTYLSKHGVVR 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                      L+  IE+   +   +I   A Q L+   G D     NEL KL+SY   +
Sbjct: 119 EFPLLQ--GAELLRWIEQRAKMLHATIESAAAQRLVELAGNDSRLLANELAKLASYVGRN 176

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I  + V  ++ D     +   ++     ++  A+  A   +        +L    ++ 
Sbjct: 177 GKIDLRAVDRLVTDQQEQNLFAFLDELSSRRLGPALRGARALVEDGQAPPYVLFMLARQI 236

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDH 315
           ++L ++  +      + E   +   K    + R   +++ R ++   +     +   +DH
Sbjct: 237 RILLQVRQLLSQRRRADEIAAELNLKP--FVARKATEQA-RNFSLPELIHAHDRLLELDH 293

Query: 316 RIHLAR 321
            I   R
Sbjct: 294 AIKTGR 299


>gi|220932126|ref|YP_002509034.1| DNA polymerase III, delta subunit [Halothermothrix orenii H 168]
 gi|219993436|gb|ACL70039.1| DNA polymerase III, delta subunit [Halothermothrix orenii H 168]
          Length = 337

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 119/304 (39%), Gaps = 17/304 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG DK L  + I++F           F+L  +N  E    + +   ++ +  + S
Sbjct: 17  PVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGE-DNFVDSLIAKVKTLPVMS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRKIAEKFTSV 137
            ++ ++    +  T K   D     +  +      ++I+   +I K     K  ++   +
Sbjct: 76  DRRYVVARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQIDKRLKPAKKIKEVGEI 135

Query: 138 LAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           + +    Y      L + I        K +++   Q+L      +     NE++K+S Y 
Sbjct: 136 INLKAPRY----RQLDNWIISKFKNHGKKVNRSVVQLLEEMFSNNLEQLENEIEKVSIYT 191

Query: 196 LEDILITEQHVKDIICD---THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +  LI+ + ++ II          I ++++A  +     AI+L +  +        +L 
Sbjct: 192 GDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMMKEGEAPLRILA 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             +++ +LL  +  +K     S ++I +   ++  P+K+         +++  +   L K
Sbjct: 252 MVVRQVRLLLSVKELK-NEGKSPDQIAKILGEHPYPVKK--CYRQCDNFSEEELEIMLEK 308

Query: 313 IDHR 316
               
Sbjct: 309 FLKA 312


>gi|330976840|gb|EGH76872.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 219

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +  HL   I + L     + +++A +++ A + G+ +A+  E++KL     E+  IT + 
Sbjct: 18  DIGHLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVET 76

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+  + D+    +  + +A + G+  +A+ + +      + +  +L    ++ + L  + 
Sbjct: 77  VQAAVADSARFDVFGLTDAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMS 136

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318
                  +  +K+       I   ++ ++ ++L+  +     + L    +ID +I 
Sbjct: 137 QQF-SQGVPLDKVFSSARPPIWDKRKPLMGKALQRHSAKRWSQLLMDAQRIDAQIK 191


>gi|222529899|ref|YP_002573781.1| DNA polymerase III subunit delta [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456746|gb|ACM61008.1| DNA polymerase III, delta subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 335

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 137/349 (39%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  ++ + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KTKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTKRFSHAIVGGNLN--NIVRF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + ++++ +N       ++   +   ++ +      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYTSTNSSLNLSAIIDNLKNFKSDST 115

Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II    ++ E K  + L++IA     V      PD    L+  ++  +    K+IS   
Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAEFVQ--PSMPD----LVKWVQNVMSKEGKTISDNM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T   +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           + +           +     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 LESGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++    +  + ++  + K     ++ ++ +  ++  +   +  I
Sbjct: 287 DK--YKKQAETFTLDKIKTIIQKTIEYEYMIKRGQIDDETALEVLLYQI 333


>gi|154496560|ref|ZP_02035256.1| hypothetical protein BACCAP_00852 [Bacteroides capillosus ATCC
           29799]
 gi|150274193|gb|EDN01284.1| hypothetical protein BACCAP_00852 [Bacteroides capillosus ATCC
           29799]
          Length = 347

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 122/331 (36%), Gaps = 15/331 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++F+G +  L    + Q KK +     + F+L  L+  E   +I      ++   + S
Sbjct: 26  RLYVFHGEETYLRDFYLGQMKKKLLPAGMEEFNLHTLSGKEF--DIKRLAQMVDCLPMMS 83

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-----KKNNTLRKIAEKFTS 136
           ++ +I++ +    K   + L  +   ++ +++ ++   ++          L    ++  S
Sbjct: 84  ERTLIVVSDYDLYKGDKEGLTALFA-DLPDYVCLVFVYDLIEYKTDARTKLAAALKEHGS 142

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V+  +     +  L+D +          I  E  + L+   G       +E+ K+ SY  
Sbjct: 143 VVNFA--RQEQGDLVDWVRRRFRATDHDIGSEEAKYLIFLCGDLMNGLISEIGKIGSYA- 199

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           ++  IT + +  +        + ++ +A   G    A  +       +     +L    +
Sbjct: 200 KNHRITREDIDAVATPQLDAVVFQMTDAIAAGNFDKAAAVLGDLYHMQEAPIKILAVLGK 259

Query: 257 KFQLLEKIHIIKE-CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + + L    +  E     S+   +     +  P ++  L +S R ++    R  + +   
Sbjct: 260 QLRQLYSARLAIENRKGTSYLMELWGMR-SAYPAEK--LMQSARRFSLPWCRRAVIRCGE 316

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
                +      + ++ Q +L +A  + +  
Sbjct: 317 MDLAMKSTGADGEELLTQFLLELAGASSRKR 347


>gi|194017698|ref|ZP_03056308.1| DNA polymerase III, delta subunit [Bacillus pumilus ATCC 7061]
 gi|194010598|gb|EDW20170.1| DNA polymerase III, delta subunit [Bacillus pumilus ATCC 7061]
          Length = 339

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 116/310 (37%), Gaps = 14/310 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V+  YG +  L+ E   + ++ +       F+  V +  E+    +    +  +    
Sbjct: 15  HPVYCLYGKETYLLQETAAKLRQAVVDEETKDFNFSVFDMEEVPLEQA--VTDAETFPFM 72

Query: 81  SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            ++++++I+N             +  L  LE  + K     I+++ +   K +   +   
Sbjct: 73  GERRLVVIKNPYFLTAEKKKEKIEHELSLLEAYLEKPAPYTILVLLAPYEKLDERKKITK 132

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                   +     N     D     +    K+++ EA + L+    G   +   E++KL
Sbjct: 133 LLKKKAAMVEAKELNPKETTDFTITLVKTEGKAMTSEAAEQLVMLCAGSLSSLFQEVRKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S+Y  E   I    V  ++  +    I E+IN  +  +   A+ +    L        +L
Sbjct: 193 STYIGEREEIELADVNQLVARSLEQNIFELINQIVNRRRSQAMQMFYDLLKQNEEPIKIL 252

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                +F+L+ +     +      ++I    +  + P +  +  +  R++++  +++ + 
Sbjct: 253 ALISTQFRLILQTKYFAQ-QGYGQKQIASNLK--VHPFRVKLAMDQARLFSEEELKQIVK 309

Query: 312 KIDHRIHLAR 321
           ++    +  +
Sbjct: 310 ELSTIDYEMK 319


>gi|257869953|ref|ZP_05649606.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2]
 gi|257804117|gb|EEV32939.1| DNA polymerase III subunit delta [Enterococcus gallinarum EG2]
          Length = 341

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 143/337 (42%), Gaps = 24/337 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN-EINSTSLF 80
            +++  G++K L  ++   F     ++  D    +   + ++++        E  S   F
Sbjct: 17  PIYLVTGTEKFLQEQVRQAFLTRFEVSKDD----LNFASFDMEREPLDLVIQEAQSLPFF 72

Query: 81  SKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129
             +++I +E    L+ EKK       LD     +   +   +++I +   ++ +   + K
Sbjct: 73  GDQRLIFVERPFFLTAEKKANVPEHDLDDFLLYLKNPMDTAVLVIFAEYDKLDERKKITK 132

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +K   ++ ++   +    +   ++++L      +++EA ++ L         +  ELQ
Sbjct: 133 QLKKAGIIIDVAPMKE--ADVRRYLQQTLTNDGIEMTREAFELFLRLTDLHLSKAMQELQ 190

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y  +D  IT++ V+ +I  T    + E+ N  +QGK+ +A  L D  L     +  
Sbjct: 191 KLRLYAGKDAKITKEIVQQLIPKTLEHNVFELTNDVLQGKVADAWRLYDDLLLQGEETIK 250

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +    + + +LL +  I+ +         I +T K I P +  +  +  R +N+  +   
Sbjct: 251 INAILIGQVRLLLQASILMKVGYQQAN--IAETLK-IHPYRVKLAMQQARKFNEKQLAAL 307

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            H++    +L  K   ++K  +FQ  L++ +   +  
Sbjct: 308 YHELIENDYLV-KSGQIDKEFLFQ--LFVLKHGKRQG 341


>gi|53804497|ref|YP_113908.1| DNA polymerase III subunit delta [Methylococcus capsulatus str.
           Bath]
 gi|53758258|gb|AAU92549.1| DNA polymerase III, delta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 334

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 107/293 (36%), Gaps = 11/293 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   + E  +  +       +    L  +         STF    +S  LF 
Sbjct: 18  PLYVLSGDEPLQLGEAADAIRMAARDRGYGLRELFHVEPGFSW---STFLEAGDSVPLFG 74

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
            ++I+ +  N   +K+    L   + +   + I+I+    + ++      A     V + 
Sbjct: 75  DRRILDLRLNAKPDKEGAAALLRYLDRPPADAILIVILPRLSRDELNTAWARAADRVGVI 134

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198
           +  +P     L+  ++  +        +   ++L A + G+ +A+  E++KL   Y    
Sbjct: 135 VQVWPLQGRELVAWLDRRMNRLGLLADQSGLRLLAARVEGNLLAAAQEIEKLHILY--GA 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I ++ +   +CD     + ++  A ++G     + +        +    +L    ++ 
Sbjct: 193 GRIEDEQILAAVCDCARYDVFDLTTAMLEGHTLRTLRILYGLEGEGVAPPVVLWAITREL 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
           + L  +        +  + ++ +    I   ++     + +  +++ V + + 
Sbjct: 253 RSLAVVQKD-TTRGLPMDGVLARLR--IFDKRKEAFARAAKRLDRDGVLDAIR 302


>gi|330722511|gb|EGH00334.1| DNA polymerase III delta subunit [gamma proteobacterium IMCC2047]
          Length = 260

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 92/234 (39%), Gaps = 5/234 (2%)

Query: 90  NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA-ISCYPDNKI 148
           N     +    L +       N++++I S ++ K     K  ++  ++ A I  +P    
Sbjct: 3   NGKPGSEGSKALIQYAQSPCDNNLLLISSAKLDKTAKNSKWFKQLDAIAAHIEIWPIESQ 62

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-LITEQHVK 207
            L   I+  +        KEA  +L   + G+ +A+  E++KL     E+   ++ Q ++
Sbjct: 63  QLPQWIDRRMRQSGLKADKEAAILLAELVDGNLLAASQEIEKLKLLLPENQPQVSAQTIR 122

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
             + D+       +++   +G I + I +            +LL    ++ + L  I   
Sbjct: 123 SYVVDSARYNAFNLVDNAFKGNIRHCIKMLKGLRDEGTEPLSLLWILGREMRQLSLIKQD 182

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            +    S ++ +Q     +   ++ ++ ++L   +   +     +I H   LA+
Sbjct: 183 IQLGR-SVDQAMQAQR--VWRNRQPLMNKALSRLSLQKLANLNQQIAHADQLAK 233


>gi|253732240|ref|ZP_04866405.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724029|gb|EES92758.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 324

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 124/331 (37%), Gaps = 18/331 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +     +E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSHE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + + 
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELL 293

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
             +       +  +     ++ I+   IL +
Sbjct: 294 NIVDACAETDYKLKSSYMDKQLILELFILSL 324


>gi|262402702|ref|ZP_06079263.1| DNA polymerase III delta subunit [Vibrio sp. RC586]
 gi|262351484|gb|EEZ00617.1| DNA polymerase III delta subunit [Vibrio sp. RC586]
          Length = 342

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 110/304 (36%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E  N  +K         F      + +   +  + ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKNAIEKTAQAQG---FLEKHRFSADAGLDWGSVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPEAGINAQTTKELSSLASQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   + ++    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQKLG-NLGSLFERYR--VWQNRRPLYSAALQRLPSTTLFRLVGLLAKAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|315122027|ref|YP_004062516.1| DNA polymerase III subunit delta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495429|gb|ADR52028.1| DNA polymerase III subunit delta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 113

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 84/109 (77%)

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           +A+FF  SKM  HALL+GFLQKFQLLEKI+I  E   IS EK IQK EK  IP KR +LQ
Sbjct: 1   MAEFFFGSKMSPHALLNGFLQKFQLLEKIYIESEFLEISIEKTIQKFEKTRIPKKRLLLQ 60

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           + L+IWNKN++++ LHKI+  IHL RKK+ LEK+IIFQ IL I+QTA K
Sbjct: 61  KFLQIWNKNIIKKILHKINQEIHLLRKKRSLEKSIIFQIILLISQTAHK 109


>gi|325980975|ref|YP_004293377.1| DNA polymerase III, delta subunit [Nitrosomonas sp. AL212]
 gi|325530494|gb|ADZ25215.1| DNA polymerase III, delta subunit [Nitrosomonas sp. AL212]
          Length = 334

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 117/310 (37%), Gaps = 13/310 (4%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I+  +  Q   K     + +    G++  LI E  +  + +     +    +  ++    
Sbjct: 3   IKLEQLAQSLQKQTASLYTLL---GNEPLLILEAADLIRAHAHQHGYTERKVFTVDQHF- 58

Query: 64  QKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
             + S   +  N+ SLF ++KI  I I +    K+    +E        + + ++    I
Sbjct: 59  --DWSDLLHADNNLSLFGERKIMDIRIPSGKPGKEGGKAIEAYCDTLPQDTLTLLTLPRI 116

Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K     +  +   TS + I  YP  +  L   I + L   Q+       Q L   + G+
Sbjct: 117 DKQGQATRWFKALETSGVLIQVYPIERNQLPIWIGQRLDKQQQKTDSATLQFLADQVEGN 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            +A+  E+QKL+        +T + +KD + +       ++ +A I G     I +    
Sbjct: 177 LLAAHQEIQKLAL-LYPSGNLTFEQIKDAVLNVARYDAFQLSDAMIHGDSARIIRILTGL 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A  +    +L    ++ + L  I    +    S  +++Q     I   ++  +Q + + 
Sbjct: 236 QAEGVAPLLILATLTEQIRQLIIIRKGLDT-GQSPVQLLQTAR--IWGDRQKSVQAAAKR 292

Query: 301 WNKNLVRETL 310
            +  ++ + L
Sbjct: 293 ISPQVLMQGL 302


>gi|22299116|ref|NP_682363.1| DNA polymerase III subunit delta [Thermosynechococcus elongatus
           BP-1]
 gi|22295298|dbj|BAC09125.1| tlr1573 [Thermosynechococcus elongatus BP-1]
          Length = 342

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 127/333 (38%), Gaps = 19/333 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ ++G D+  + + +   ++ +     + F+       +     +     + +  L  
Sbjct: 9   PVYFYWGEDQFQLEQAVKNLRQQVVDPLWESFNFEKFAGEDAVAVQAALAQAM-TPPLGG 67

Query: 82  KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFTS 136
             +++ + N +  ++    +L  LE  + +   N  +++ S +     +   K+ ++  +
Sbjct: 68  GDRLVWLMNTTLGQRCSAELLADLELTLPQIPPNCHLLLTSTQKPDSRSKAVKLLQQHGN 127

Query: 137 VLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +       P     +   I E+    Q  +  E  Q+L   +G D    RNEL+KL+ + 
Sbjct: 128 IQEFNPIAPWKTAEIEQQIREAAQRYQLHLPPEGLQLLAEAVGNDSRQLRNELEKLALFA 187

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +   +T + +  ++  T    +  + +  ++G    A+   +  L    P   LL    
Sbjct: 188 GDRP-LTAEDITTLVHATQQNSL-TLASTLLRGDTAAALTQLEDLLLQNEPPLRLLATLT 245

Query: 256 QKFQL---LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
           ++F+    ++ +   ++   I+    +   ++ +  +++ +   +L       ++  L  
Sbjct: 246 KQFRTWLWVKLLSHERDNQRIAKLAEVGNPKR-VYFLQKEVNAVAL-----PSLQACLQI 299

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +    +  +         + Q ++ ++ T  + 
Sbjct: 300 LLATEYQLKVGAEP-VATLRQGMIQLSLTCSRR 331


>gi|324323943|gb|ADY24986.1| DNA polymerase III subunit delta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 331

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 116/303 (38%), Gaps = 12/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L+ + + +  +  + + ++  +++  +  E  + I    NE    S F 
Sbjct: 2   PTYVMYGKETYLLEDKVKEIVRGFTNSTNEDLNVIEFDMEE--ETIQAAINEAEEYSFFG 59

Query: 82  KKKIILIENL-----STEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
             KI++  N         K+V   +DC+   + KN+ + ++I+  +  K +   + + E 
Sbjct: 60  GTKIVITRNAKFLTTDNNKEVNHDVDCILSFLEKNMEDSVLILTVDYEKLDQRKKIVKEL 119

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               +       N+      I          IS E  Q L+ ++G D    +NE+ KL  
Sbjct: 120 KKKAIIFEAKALNQAETATWILNYAKDKNIQISNELVQELIVSIGCDLRCLKNEVDKLYV 179

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y   +  IT   V  +   +    I  +    +    + AI L +  +  K     +L  
Sbjct: 180 YSNGEKEITSDAVAAVTVKSLEQSIFNLSEYLLSHDTHKAIGLFNELILKKHNPIQILAT 239

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            + KF +L KI +++  +       I      ++   +  ++E     +K+ +   L  +
Sbjct: 240 LIYKFDMLFKIKVLQNGTKDKELIGILGCHPYVLQKSKEQIKEF--NLSKDDLGNILCLL 297

Query: 314 DHR 316
              
Sbjct: 298 TEA 300


>gi|312135644|ref|YP_004002982.1| DNA polymerase III subunit delta [Caldicellulosiruptor owensensis
           OL]
 gi|311775695|gb|ADQ05182.1| DNA polymerase III, delta subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 335

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 136/349 (38%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVKF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + ++++ +N       ++   +   ++ +      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSNLNLSAIIDNLKNFKSDST 115

Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II    ++ E K  + L++IA     V       D    L+  ++  +    K+IS+  
Sbjct: 116 YIIFKEYEAKENKLFSALKQIAYSAEFVQ--PSMSD----LVRWVQNVMSKEGKAISENM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T + +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHEDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
                         +     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++    +  + ++  + K     ++ +K +  ++  +   +  I
Sbjct: 287 DK--YKKQAESFTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333


>gi|89891337|ref|ZP_01202843.1| DNA polymerase III delta subunit [Flavobacteria bacterium BBFL7]
 gi|89516368|gb|EAS19029.1| DNA  polymerase III delta subunit [Flavobacteria bacterium BBFL7]
          Length = 335

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 106/302 (35%), Gaps = 9/302 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  YG++   I E+ +    N+       F+ +VL   +I  ++           + +
Sbjct: 18  PIYFLYGNEPYFIDEISDYIAANVLDEGEKGFNQMVLYGRDI--DMGELVENAKRFPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             ++I+++      +  D  E    +     I++        +   +   E   + +   
Sbjct: 76  DYQVIIVKEAQDLARHWDKFESYAKQPQPTTILVFNYKYKTPDKRKKVFKEMAKNAVFFE 135

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
             P  +  ++  I   L     +I  +A Q+L+  LG +    +NEL KL        +I
Sbjct: 136 SKPLYENKVLPWINSHLKSNGYNIEPKAGQMLIEFLGTEIAKIKNELDKLMIIVPAGTMI 195

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259
           T Q +++ I  +      E+  A           + ++F  +    P    +      F 
Sbjct: 196 TPQLIEENIGISKDYNNFELRKALGSRDTVKVNRIINYFAENPKDNPLVVTIGQLHSFFV 255

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K+H + +    + + + ++   +   ++      + + ++       +  I      
Sbjct: 256 QLLKLHAMTD---RNPQTVARQIGVSPFFVQEYF--TAAKHYSMKHCSHAIKIIRDIDMK 310

Query: 320 AR 321
           ++
Sbjct: 311 SK 312


>gi|301059428|ref|ZP_07200349.1| DNA polymerase III, delta subunit [delta proteobacterium NaphS2]
 gi|300446464|gb|EFK10308.1| DNA polymerase III, delta subunit [delta proteobacterium NaphS2]
          Length = 332

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 120/320 (37%), Gaps = 11/320 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++FYG D   + +++ Q ++         F++ V +  E   N     +   S    S
Sbjct: 21  PLYLFYGPDDFHLEKILEQIREKAVPESARDFNVQVFDG-EGGVNPGHILDAARSLPFLS 79

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             ++I++          L+ L   +   +    II  +   K +  L+  +       A+
Sbjct: 80  GNRLIIVRRTDRIAASDLEILIPYVKSPVETTCIIFVAQ--KPDFRLKFFSSMRKQGHAV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                     +  I  S      +IS++A + L   +G    A   EL+KL         
Sbjct: 138 HFKELTDAQAVPWIMASAREMGLNISQDACRHLHGMIGNRSRALYTELEKLHLR-HGTGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL--ASKMPSHALLHGFLQKF 258
           I    +K++   + +  I E+++   Q     ++ + + +L    K  +  ++    ++ 
Sbjct: 197 IGTPEIKELSIFSRMYTIFELMDEISQRGKARSLSILNRYLEEEGKDAAFGIIGMLTRQI 256

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           +++ +   +    ++S + + +K       + + IL ++ R W +  + + L  +     
Sbjct: 257 RIIFQAKELM-SQHVSRKDMAKKLGVPAFVVGK-ILGQA-RRWQEKDLEKALMLLYQAD- 312

Query: 319 LARKKKYLEKNIIFQTILYI 338
            + K       ++   +L I
Sbjct: 313 GSLKSGSQAPLVLENFLLSI 332


>gi|116492909|ref|YP_804644.1| DNA polymerase III, delta subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103059|gb|ABJ68202.1| DNA polymerase III, delta subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 339

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 123/313 (39%), Gaps = 18/313 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFS 81
           +++  G D      +    KK +     +   ++ +   +++  ++    ++  S   F 
Sbjct: 18  IYLVEGPD----NYIQKAVKKELIDFIPEDQRVMNVGTYDLENVDLGMVLDDAQSAPFFG 73

Query: 82  KKKIILIEN---LSTEKKVL----DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
             +++++ N   L+ EK  L    D L   I       I++I +   K +   + + +  
Sbjct: 74  DYRLVILNNPVFLTGEKTKLKFNLDGLLSYIKNPEPTTIMLIAAKYEKLDGRKKIVKDLK 133

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             V  I      +     +I++ +   +  I  +A   L+     D     NELQKL+ Y
Sbjct: 134 KIVEVIDANSPKESDTRKIIQQYVDEKRTEIDSDALDELILRTDNDLAQIINELQKLTVY 193

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 I    V+ ++       + ++IN  +QG +  +I      L ++     +    
Sbjct: 194 ASGTEKIDLNAVQKLVPKGLNQNVFDLINVLMQGNLRKSIDDYSVLLLNQEQPLRINAAL 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311
           + +F+LL ++ I+ E    S  K+ Q+ +    P +  +  +S+R +N   +      L 
Sbjct: 254 VSQFRLLLQVKILMER-GFSQGKLAQELKA--HPYRIKLAMQSVRQFNIQSLENAYIGLV 310

Query: 312 KIDHRIHLARKKK 324
            ++ ++   ++  
Sbjct: 311 DLEEQLKTTQRDP 323


>gi|281356142|ref|ZP_06242635.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281317511|gb|EFB01532.1| DNA polymerase III, delta subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 358

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 117/359 (32%), Gaps = 39/359 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNIS---ITYHDPFSLVVLNALEIQKNI--STFWNEINS 76
            +++  G D+  + E        ++           ++  ++ E++ +     F +   +
Sbjct: 3   KLYVICGDDEFAVKERSRALAAELAGGAPEESPAVEIIAGDSDELKPDAIVGKFLDAART 62

Query: 77  TSLFSKKKIILIENLSTEKKV---------LDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
            S     K++ + +    +           L+    +  +   +  +++           
Sbjct: 63  PSFLCSDKLVWLRHFPDFELFSAKSAAPVYLETAALLGQELPPDLTVLLDGFGFDVRKGF 122

Query: 128 RKIAEKFTSVL--------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            K  +   +V+        +   Y D++  L   I E      KSI   A Q L   LGG
Sbjct: 123 GKALKAAGAVIETLNVTKSSDKRYADDRR-LN--IREICQAAGKSIEPAAAQFLTETLGG 179

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D    RNEL+KL SY  +   IT    + + C T      E   A +   +  A+ L   
Sbjct: 180 DSGTLRNELEKLFSYTGDAPAITLNDCRAVCCRTPETVSWEFTGAIVSRNLPLALQLLSV 239

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF--EKIIQKTEKN------------ 285
            L    P   L+     ++Q   +  +  +   I+    +       +            
Sbjct: 240 LLRQGEPEIRLMGSLSGEYQKQIQTKLAMQQLKITRVSPRTFDSLPPSVKEEFPNNPLLK 299

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           I P +   + E+   +    +   L  + +            + I+ Q I+ + + + +
Sbjct: 300 IHPFRAYKVCEAAANYTDAELIRNLELVRNANRALVSGGGDRRIILEQLIIKLTRRSQR 358


>gi|270307493|ref|YP_003329551.1| DNA polymerase III, delta subunit [Dehalococcoides sp. VS]
 gi|270153385|gb|ACZ61223.1| DNA polymerase III, delta subunit [Dehalococcoides sp. VS]
          Length = 419

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 122/345 (35%), Gaps = 40/345 (11%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           L + ++IF GSD   + E + Q K  +        +  +L    +    +   N + +  
Sbjct: 75  LLNLLYIFTGSDDFSLKERLKQIKLALGDESLSSANTTMLEGKNLTA--AELQNYVQTVP 132

Query: 79  LFSKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIII------K 117
             +  +++++  L               +  K   D     +       + ++      K
Sbjct: 133 FLAPARLVIVNGLLERFEGSKGKAAAKDTASKTSPDEFARALSNLPPTTLAVLLDYTSSK 192

Query: 118 SNEIK--------KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
             + +         +N L K+      V   +       +L   + +        +S  A
Sbjct: 193 DGDYREKEKVSALASNPLFKLVSPGAEVKHFAPLS--AQNLPGWVMQRAKQSSIQMSVPA 250

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            ++L   +G D     +E++KL  Y     +I E  V++++     + I  +++A +  K
Sbjct: 251 ARLLARFVGADLWTLSSEIEKLGLYAQG-RVIEEADVENMVGYAQEVNIFALVDAVLDCK 309

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           + +A      F A       LL   +++ +L+ + +   +   +   +I +    +   +
Sbjct: 310 VKDAQQSLTAFTAGGGSPGFLLFMLVRQLRLMVR-YTALKKRGLKEAEIFKAMGGSEYAL 368

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331
           ++   Q + +  N + ++    K+      I   R +  L   ++
Sbjct: 369 RKTASQAACQ--NMDSLKAIYSKLLETDFNIKTGRFEPELAMGLL 411


>gi|167626871|ref|YP_001677371.1| DNA polymerase III subunit delta [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596872|gb|ABZ86870.1| DNA polymerase III, delta subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 325

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 26/261 (9%)

Query: 15  KNLFLSHFVFIFYGSD----KGLIFELINQF-KKNISITYHDPFSLVVLNALEIQKNIST 69
           KN    + +F+  G +      +I ++ +QF  K+  I+YHD            ++N+  
Sbjct: 11  KNDLTEYKLFMITGDEPLQKHNIIEKITDQFKAKSYEISYHDL----------NEQNLDV 60

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            + E++S SLFS  K+I    +   +KK+   L + +I    N  +++ S  +KK NT  
Sbjct: 61  LYGEVDSLSLFSMDKLIQFNFDKPPQKKLQQALADKLISEDDNVYLLVFSG-MKKQNTSA 119

Query: 129 KIA----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K       +   +   +   DN I+++D   + L     S+++ A Q+L+    G+ IAS
Sbjct: 120 KWFQSLEHRAIHISIFNPNIDNAINIIDYEAKQL---GLSLTQPAVQLLVQKTEGNLIAS 176

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +  ++ LS          E  ++  I +     + ++  A +  +   A+ + +  L   
Sbjct: 177 KQIIKLLS--RQSTQTYDENTIRPFIHEHANFDVFDLSEALLSQQKTKALKILNSILTEN 234

Query: 245 MPSHALLHGFLQKFQLLEKIH 265
                +L    ++ +++ ++ 
Sbjct: 235 DKPPLVLWAIKRELRIISQLK 255


>gi|269961553|ref|ZP_06175915.1| DNA polymerase III, delta subunit [Vibrio harveyi 1DA3]
 gi|269833594|gb|EEZ87691.1| DNA polymerase III, delta subunit [Vibrio harveyi 1DA3]
          Length = 339

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 113/305 (37%), Gaps = 17/305 (5%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           V++ +G++  LI E    I    +         F++      +   + +  ++   + SL
Sbjct: 19  VYLIFGNEPLLIQESRQTIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALSL 72

Query: 80  FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           FS +++I +E         +   L  +      + ++++  +++ K     K  +     
Sbjct: 73  FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWFKALSGK 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +SC   +   L   ++           +++ Q+L     G+  A    L+KL+    
Sbjct: 133 GDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-LY 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   +++ +   +       I+A + GK   A  +     A  + +  L+    +
Sbjct: 192 PDGELTVVRLEEALSRHNHFTTFHWIDALLAGKGNRAQRILRQLEAEGVETVILIRSVQK 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +F  L  +H       +S  ++ +K    +   KR +   +L   + + +   L  + H 
Sbjct: 252 EFNQLLNMHRDLTQMGMS--QVFEKHR--VWQNKRPLYNAALTRLSASRICALLSLLAHA 307

Query: 317 IHLAR 321
              A+
Sbjct: 308 EIKAK 312


>gi|257094625|ref|YP_003168266.1| DNA polymerase III subunit delta [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047149|gb|ACV36337.1| DNA polymerase III, delta subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 334

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 108/286 (37%), Gaps = 18/286 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +  L+ E  +  +        D   ++         +    ++   S SLF 
Sbjct: 18  PVYLVYGDEPLLVIEAADAIRAAARRNGFDEREVLTATGGFNWND---LYHAAGSMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI----KKNNTLRKIAEKFT 135
            +K+I   I      +     L+E   +   + ++++    +    +K+  +  +A    
Sbjct: 75  GRKVIDLRIPTGKPGRDGSAALQEYCARPSPDSLLLVTLPGVDWRDEKSAWMSALAAAGV 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-SY 194
            V  I         L   I   L   ++S + E  + +   + G+ +A+  E+ KL+  Y
Sbjct: 135 VVKLIPPL---VADLPAWIAGRLRRQKQSAAAEGLRFIAERVEGNLLAAHQEILKLAVLY 191

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + +++ + +     ++ +  A + G +       D           +L   
Sbjct: 192 --PRGALSLEQIREAVLNVARYDLDGLREAMLAGDVARLTRTIDGLQQEGEAPLLVLWAM 249

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            +  ++L +I+        S + ++++    +  +++ +++ +++ 
Sbjct: 250 TEDVRVLAQINAGL-AGRQSLDLLLKEAR--VWGVRQPLVRRAVQR 292


>gi|258621971|ref|ZP_05717000.1| DNA polymerase III, delta subunit [Vibrio mimicus VM573]
 gi|258585724|gb|EEW10444.1| DNA polymerase III, delta subunit [Vibrio mimicus VM573]
          Length = 342

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E     +K         F      + +   + S+ ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADSGLDWSSVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + I+++   ++ K        +  +   
Sbjct: 74  SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +       I+A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWIDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSTALFRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|188996127|ref|YP_001930378.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931194|gb|ACD65824.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 331

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 131/320 (40%), Gaps = 24/320 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I++ + +++   NL     V I YG +           K  +   +     + V   
Sbjct: 1   MSEIKASQLLKEF--NLSQLKPVLIIYGDEY--------LTKALVVEKFKSVLPVKVYWG 50

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIII-----KNICNHI 113
            E+  + ++F N + S  LFS  K I++ +    T+K   D L++II      K     +
Sbjct: 51  DEL--DYTSFRNHLFSKDLFSSSKAIVVRDFEAFTDKLKKDELKQIIEDIKNIKLPDRLV 108

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +I+   ++ K     K   K  +V  +          +  ++  L    K++S E  + L
Sbjct: 109 LIVNLEKLDKEP--YKSLLKLGNVDVVISKKLTFQGFLTSLKNKLAKEGKTVSDENLKYL 166

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + L  D   ++NE++KL  Y  +   IT++ +  ++       +   ++   +  I +A
Sbjct: 167 ASLLNNDLTIAKNEVEKLLLYVGDKKEITKEDIDAVVTPVFEENVFNFLDKFFKKDI-SA 225

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           + +    L + +    +    L + +   +  I+ E  N S E+ + K   N  P+++  
Sbjct: 226 LKIFINLLNNGVHPFEIQSLILSQLEKALQTKILIEAGN-SLEEALNKAGIN-HPLQKVN 283

Query: 294 LQESLRIWNKNLVRETLHKI 313
           +   L+  +K  + + L  +
Sbjct: 284 ISNILKNLSKEEMVKLLDNL 303


>gi|147677202|ref|YP_001211417.1| DNA polymerase III, delta subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146273299|dbj|BAF59048.1| DNA polymerase III, delta subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 358

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 106/294 (36%), Gaps = 25/294 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG +  L  + + + K++++       +  +++   +    +       +    +
Sbjct: 18  PVYLFYGEETYLKEQAVLRLKEHLAGGDRSGLNFDLVDGETVA--PAEIAARAETLPFLA 75

Query: 82  KKKIILIEN--------------LSTEKKVLDC-----LEEIIIKNICNHIIIIKSNE-I 121
            K++++++N                 EK          L + +     +  ++  + E +
Sbjct: 76  GKRLVVVKNPAFLQPAGKTGDGPAGDEKGAKSSGKESPLLKYLENPPSSTCLVFVAGESV 135

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
            +   L +  +K    +  +     +  L   + +      +  +  A   LL   G   
Sbjct: 136 DRRRRLFQAIKKCGQAVEFTFLS--RGELTRWLVQKAGAEGRRFAAGAADALLDAAGPSL 193

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                EL+KL SY      IT + V+ +        I  +++A    +   A+      L
Sbjct: 194 QTLVLELEKLFSYTAGQKFITVEDVRAVCPPGPEENIFAVVDAVGNRRCGEALAGIKDML 253

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           A++ P   +L    ++F+LL ++  + E       +I  +   +    ++  LQ
Sbjct: 254 AAREPPLRILAMITRQFRLLLQVRELLE-QGCPPGRIPDRLGVHPYTARKAALQ 306


>gi|300722321|ref|YP_003711606.1| DNA polymerase III subunit delta [Xenorhabdus nematophila ATCC
           19061]
 gi|297628823|emb|CBJ89401.1| DNA polymerase III, delta subunit, probably ATP hydrolase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 343

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 121/311 (38%), Gaps = 23/311 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ +G++  L+ E  +  +K   +   + F      AL+   +    ++   S SLF
Sbjct: 18  RSIYLLWGNEPLLLQESQDSIRK---VAEQNGFMEHFTFALDNHTDWDEIFSLCQSLSLF 74

Query: 81  SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           + ++   +L+        + + L ++      + ++I+      + + L K  E      
Sbjct: 75  ASRQSLTLLLPENGPNAAMAERLIKLSELLHPDILLIL------RGHKLTKAQENSPWFK 128

Query: 139 AIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           AI        C    +  L   + +       S+  EA Q+L     G+ +A    L++L
Sbjct: 129 AIGKNGVYVTCLAPEQNRLPQWVSQRAKNRGLSLEDEANQLLCYCYEGNLLALAQALERL 188

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S     D  +T   V++ + D         ++A + GKI  A  +          S  LL
Sbjct: 189 SL-LHPDNQLTLHRVEEAVNDAAHFSPYHWVDALLTGKIKRAWHILKQLRQEDTESVILL 247

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ + I  + +  + +  +   +R +L ++L+  ++  ++  +H
Sbjct: 248 RTIQRELMLLLVLK--RQSTTIPLKTLFDQHK--VWQNRRPLLIDALQRLSQQDLQSAIH 303

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 304 LLTQMELRVKQ 314


>gi|282920135|ref|ZP_06327860.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9765]
 gi|282594483|gb|EFB99468.1| DNA polymerase III, delta subunit [Staphylococcus aureus A9765]
          Length = 324

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 113/299 (37%), Gaps = 18/299 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK        +D L E I K    ++I+ +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  I    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKHARLKKIEQMSEEE--IKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  +  +   I +Q V  II  +    +  +     + K   AI L    +  K   
Sbjct: 177 IEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIYLVKDLITMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             LL      ++L  +  I+ +    S ++I +     + P +  +    +R +  + +
Sbjct: 237 IKLLALITSNYRLFYQCKILSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDEL 292


>gi|262394988|ref|YP_003286842.1| DNA polymerase III delta subunit [Vibrio sp. Ex25]
 gi|262338582|gb|ACY52377.1| DNA polymerase III delta subunit [Vibrio sp. Ex25]
          Length = 339

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFAVDASIDWNQVYDCFQAMSLFSN 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +++I +E         V   L+ +      + +++I  +++ K     K  +   +    
Sbjct: 76  RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC   +   L   I+           +++ Q+L     G+  A    L+KL+     D 
Sbjct: 136 VSCLSPDLQRLPMFIQARCRTLGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPDG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++  
Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGVETVILIRSVQKELS 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +H       ++  ++ +K    +   KR +   +L   + + +   L  +      
Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310

Query: 320 AR 321
           A+
Sbjct: 311 AK 312


>gi|223939234|ref|ZP_03631115.1| DNA polymerase III delta [bacterium Ellin514]
 gi|223892066|gb|EEF58546.1| DNA polymerase III delta [bacterium Ellin514]
          Length = 381

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 128/383 (33%), Gaps = 58/383 (15%)

Query: 13  STKNLFLSHFVFIFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNIS 68
            +        + +  G D+  + +   Q      + +    H+     V N+ E  K I+
Sbjct: 2   PSSAAKQPASLVLVCGDDEFAVKQRAKQLFQQWSQELGGMDHEMIDAGVSNSGEALKVIA 61

Query: 69  TFWNEINSTSLFSKKKIILIEN--------LSTEKKVLDCLEEIIIKNI----CNHIIII 116
                + +   F   K + ++N         ++ + V + L E+  +       N  ++I
Sbjct: 62  RLREALQTLPFFGGGKAVWLQNCNFLGDERAASAQAVTETLGELAQELKDFSWGNVRLLI 121

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH----LMDLIEESLLIGQKSISKEAKQI 172
            + ++ K     K  +K   V + +    +          +  ++L   +K IS EA   
Sbjct: 122 SAGKVDKRKVFYKTIDKLGEVESFAGLSIDDKDWMQQAETMALQTLRGLKKEISDEALAE 181

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L+AN+G       +E +KL+ Y  E   I    V  I           + +A     +  
Sbjct: 182 LVANVGPSARQLNSEAEKLALYVGERRDIELDDVAAICTRNKSARAFALGDALGDRDLPK 241

Query: 233 AIMLADFFL-----ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE---- 283
            +   D  L      S+     LL+G + K + +  +  +     I   +  Q+ +    
Sbjct: 242 LLRRLDEELWEMKFDSQKSEIGLLYGLISKVRAMILLKEMVREGWIKPAQDYQRFKAQLE 301

Query: 284 -------------------KNIIPMKRNILQESLRIWNKNLVRETLHKI---DHRIHLAR 321
                                I+           + +++  +   +  +   + R+  + 
Sbjct: 302 RVPVEKLPEDKRFNPLSINPYILFKAFP----QSQRYSQPELIRAMDLLLKCNQRLISSS 357

Query: 322 KKKYLEKNIIFQTILYIAQTACK 344
             + L   I+ QT++ I  +A +
Sbjct: 358 LDEAL---ILQQTLIEIVGSAKQ 377


>gi|302872357|ref|YP_003840993.1| DNA polymerase III, delta subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575216|gb|ADL43007.1| DNA polymerase III, delta subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 335

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 135/349 (38%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSYAIVGGNLN--NIVKF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + K+++ +N       ++   +   ++ +      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPKVLIFKNFFKYASTNSSLNLSAIIDNLKNFKSDST 115

Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II    ++ E K  + L++IA     V      PD    L+  ++  +    K+IS+  
Sbjct: 116 YIIFKEYEAKENKFFSALKQIAYSAEFVQ--PSMPD----LVKWVQNVMSKEGKAISENM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T   +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNHLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
                         +     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++       + ++  + K     ++ +K +  ++  +   +  I
Sbjct: 287 DK--YKKQAESLTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333


>gi|323340656|ref|ZP_08080908.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323091779|gb|EFZ34399.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 365

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 126/316 (39%), Gaps = 18/316 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G ++    E+ N     +S      F+  + +  E    +++  N+  S   F  
Sbjct: 42  IYLILGKERYCSEEIKNALLGKLSPQEK-EFNSSIYDMEET--PLASALNDAMSVPFFGD 98

Query: 83  KKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           ++I+++ N   L+ EKK       +D L + +   +    ++  +   K +   + +   
Sbjct: 99  RRIVIVNNPYFLTGEKKKNKVEHDIDGLLKYLEYPLETTTLVFIAPYEKLDERKKVVKTL 158

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 +   P  +I +  +I + L     SI  +A   L+     +   + NEL KL  
Sbjct: 159 KKVADVVENQPLKEIQVRQIINQRLKKNGLSIEPKAFDTLMERTNAEISLAMNELDKLIL 218

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
            C ++ +I+E     +I  +    + +++   +      +I +    L SK    A+   
Sbjct: 219 LCKDEQVISEAEADRMISRSLEQNVFDLVALVLSRNTQKSIEMYHDLLLSKEEPIAINAI 278

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---L 310
            + +F+LL ++ I+K     S   I    +  I P +  +   +++ + +  ++     L
Sbjct: 279 LIGQFRLLLQVSILK-RHGFSQGSITTALK--IHPYRVKLALRTVQKFQQEDLKNAYLGL 335

Query: 311 HKIDHRIHLARKKKYL 326
            K++ R+    +   L
Sbjct: 336 VKVEKRLKSTDQDPEL 351


>gi|152976754|ref|YP_001376271.1| DNA polymerase III subunit delta [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025506|gb|ABS23276.1| DNA polymerase III, delta subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 336

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 126/322 (39%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG++   I E I+             F++V  +  E    +     +  +   F 
Sbjct: 15  PFYLLYGTEAYFINETIDLITVEALAEEDRDFNIVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++KI+LI++   L+++K+ L+     LEE I +     I+I  +   K +   +      
Sbjct: 73  ERKILLIKSPLFLTSQKEKLEQNIKILEEYIAEPSPFSIMIFIAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I +        + + A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTAEVVEANAMQVQDVRKWIVKRAEEVHVHVEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGTGGDITTKLVSELVPKSVEQNVFALTEKVVKKDIAGAMKILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     ++++   +++ + ++ 
Sbjct: 253 VSQFRLLHQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKLFSFEELKKVIFELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|23099432|ref|NP_692898.1| DNA polymerase III subunit delta [Oceanobacillus iheyensis HTE831]
 gi|22777661|dbj|BAC13933.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 337

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++   + EL     K +        SL  LN + IQ+       +  +   F 
Sbjct: 16  PVYLAFGTESYFLEELKQALIKQVLNGDTSNLSLYDLNEMPIQE----VLTDAETFPFFE 71

Query: 82  KKKIILIENLSTEKKVLDCL---------EEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           +KK+I+  N S  K   D L         EE +       +++I +   ++ +   + K 
Sbjct: 72  EKKLIIATNASFLKARPDKLSFEHNTSYLEEYVQNPPDYTVLLIIAPYEKLDERKKITKQ 131

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +  + ++   C    +      +E  +     ++  +AK +L A +  +    ++E++K
Sbjct: 132 LKNNSQLV--DCQEIREQDARKWLESIISKNNITMDAKAKDMLEAEVTTNIQLLQSEIEK 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           ++ Y  E   ++E+  + +I  T       +++A + G+I  A+ +            A+
Sbjct: 190 MALYVGEGGHVSEEDAQRLISHTPTSTSLAMVDAVMHGEIQRAMRIYKDLEKMNEDPIAM 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305
           +     +F+++ ++ ++K+    +  ++ ++   +     I   +   + +       + 
Sbjct: 250 IGLLSYQFRMILRVKLMKQ-KGYTQFQMQKQIGAHPYVIKIAMSREKNISQ-------DK 301

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           + + + ++        K+  +EK++ F+ +L
Sbjct: 302 LEQIIQRLAETD-SVMKQGKMEKSLAFELLL 331


>gi|269965471|ref|ZP_06179590.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B]
 gi|269829950|gb|EEZ84180.1| DNA polymerase III subunit delta [Vibrio alginolyticus 40B]
          Length = 339

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFAVDASIDWNQVYDCFQAMSLFSN 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +++I +E         V   L+ +      + +++I  +++ K     K  +   +    
Sbjct: 76  RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC   +   L   I+           +++ Q+L     G+  A    L+KL+     D 
Sbjct: 136 VSCLSPDLQRLPMFIQTRCRTLGLKPDQQSLQMLAQWHEGNLFALTQSLEKLAL-LYPDG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++  
Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGVETVILIRSVQKELS 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +H       ++  ++ +K    +   KR +   +L   + + +   L  +      
Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310

Query: 320 AR 321
           A+
Sbjct: 311 AK 312


>gi|238752601|ref|ZP_04614074.1| DNA polymerase III subunit delta [Yersinia rohdei ATCC 43380]
 gi|238709192|gb|EEQ01437.1| DNA polymerase III subunit delta [Yersinia rohdei ATCC 43380]
          Length = 314

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 101/266 (37%), Gaps = 10/266 (3%)

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
            T ++   + SLF+ ++ +L+   +      + + L ++      + ++I+++N++ K  
Sbjct: 33  DTIFSLCQALSLFASRQTLLLNFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 92

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
                 +    + + +SC    +  L   +          +   A Q+L     G+ +A 
Sbjct: 93  ENSLWFKALSKNGVLVSCQTPEQAQLPRWVNSRAKSLNLEVDDAAIQLLCYCYEGNLLAL 152

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              L++LS     D  +T   V+  + D         ++A + GK   A  +        
Sbjct: 153 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 211

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++   L  +    E   +    +  + +  +   +R ++ ++L+  +  
Sbjct: 212 SEPVILLRTLQRELLQLLTLKRRME--QVPLRTLFDQFK--VWQNRRPLMTQALQRLSMQ 267

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330
            +++ +H +       R K+   ++I
Sbjct: 268 QLQQAVHLLAQI--EVRLKQDYGQSI 291


>gi|121998922|ref|YP_001003709.1| DNA polymerase III subunit delta [Halorhodospira halophila SL1]
 gi|121590327|gb|ABM62907.1| DNA polymerase III, delta subunit [Halorhodospira halophila SL1]
          Length = 334

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 107/307 (34%), Gaps = 25/307 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V    G +  L  E  +  ++      H    ++ ++A     +        +S SLF 
Sbjct: 19  RVCFIAGEEPLLQREATDAVRRAAREAGHSEREVLDVDAGF---DWGWLTEAASSLSLFG 75

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKFT 135
            +++  + +      +   + L+        + ++++ S  ++++       R +AE   
Sbjct: 76  DRRLLEVRMPGGKPGRDGAEALKAYCQDPPEDTVLLLTSGRLERSARESAWARALAEAGI 135

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               + C+P     +   + E L         EA  ++     G+ +A+   ++KL    
Sbjct: 136 F---VYCWPVPGRDMPRWVAERLRRAGLQADPEAAALIAERSEGNLLAADQAVEKLRLLV 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                +  +     + D+    ++++ +A +  +   A+ +        +    +L    
Sbjct: 193 GSGTAVDVETAAGALADSARYTVDDLADAALDAEWTRALRVLATLREEGVQPPLILWALA 252

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNK---NLVRETLH 311
           +  ++  ++    +   +  E+I           +R   L+++ R         + +  H
Sbjct: 253 RDIRVAARLAAGADEGVLQRERI---------WKRRVGRLRQAARRHPAGAWRQLLQRCH 303

Query: 312 KIDHRIH 318
           ++D  I 
Sbjct: 304 RVDRAIK 310


>gi|58582950|ref|YP_201966.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624797|ref|YP_452169.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188577784|ref|YP_001914713.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58427544|gb|AAW76581.1| DNA polymerase III delta subunit [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368737|dbj|BAE69895.1| DNA polymerase III delta subunit [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188522236|gb|ACD60181.1| DNA polymerase III, delta subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 342

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 101/287 (35%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K AE    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  Q ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KTLDLQAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|91228818|ref|ZP_01262725.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01]
 gi|91187623|gb|EAS73948.1| DNA polymerase III subunit delta [Vibrio alginolyticus 12G01]
          Length = 339

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 113/302 (37%), Gaps = 11/302 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      +++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKAAFQQG---FEEKHRFSVDASIDWNQVYDCFQAMSLFSN 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +++I +E         V   L+ +      + +++I  +++ K     K  +   +    
Sbjct: 76  RQLIELEIPESGVTTAVSKELQTLCDMLHDDIMLVIVGSKLTKAQENAKWFKALSSKGDW 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +SC   +   L   I+           +++ Q+L     G+  A    L+KL+     D 
Sbjct: 136 VSCLSPDLQRLPMFIQTRCRTLGLKPDQQSLQMLAQWHEGNLFALTQSLEKLAL-LYPDG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++  
Sbjct: 195 ELTIIRLEEALSRHNHFTTFNWIDALLAGKTNRAQRILRQLEAEGVETVILIRSVQKELS 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L  +H       ++  ++ +K    +   KR +   +L   + + +   L  +      
Sbjct: 255 QLLNMHQDLTQMGMN--QVFEKYR--VWQNKRPLYNAALTRLSASRICALLSLLAQAEIK 310

Query: 320 AR 321
           A+
Sbjct: 311 AK 312


>gi|229523254|ref|ZP_04412661.1| DNA polymerase III delta subunit [Vibrio cholerae TM 11079-80]
 gi|229339617|gb|EEO04632.1| DNA polymerase III delta subunit [Vibrio cholerae TM 11079-80]
          Length = 342

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNALYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|188990939|ref|YP_001902949.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732699|emb|CAP50893.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 342

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 113/332 (34%), Gaps = 33/332 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGISEREVFDADGREF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   S    K   + +         + +++I +N+  K +   K A+    +  
Sbjct: 76  PRRLVEVRMPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAQGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++  + ++ ++ D     +  +   T  G+    + +     A      AL+   +++ 
Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAENTFSGQPAAVVRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIWNK--------N 304
                +    +    +    ++     I   ++   + +L      R W +        +
Sbjct: 254 LRTASL-AKVQAGGGNLGAEMKAQG--IWESRQAPFKRALQRHPEPRRWERFVAEAGLVD 310

Query: 305 LVRE---------TLHKIDHRIHLARKKKYLE 327
            + +          L ++   +  AR  + L 
Sbjct: 311 RMAKGRAEGDPWVALERLLVAVAEARAVRLLA 342


>gi|288561734|ref|YP_003429140.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4]
 gi|288548366|gb|ADC52248.1| DNA polymerase III subunit delta [Bacillus pseudofirmus OF4]
          Length = 321

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 128/327 (39%), Gaps = 17/327 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  LI +   +          D F+    +  E    ++    +  + S   
Sbjct: 3   PIYLIFGDEPFLIEDNRFRITHEAVGEV-DEFNSSSFDMEE--DELTKAIGDAQTLSFMG 59

Query: 82  KKKIILIEN----LSTEKKV---LDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAE 132
             +I+ ++N       + K+   LD L   + +      +++   ++++     + KI +
Sbjct: 60  GHRIVTLKNCTFLTGNKTKLEQDLDALIRYVEEPNDMATLVLTLHADKLDARKKISKILK 119

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V  I+C       L   I+         I   A + L+  LG D  A + E+QK+S
Sbjct: 120 KSENVEIITCQSLPPHKLKQWIQAEAESQAAGIDPIAVESLIKLLGSDLTALKQEIQKIS 179

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E  +I+E+H+  ++       I  +I+  I+     AI L    L  K     ++ 
Sbjct: 180 LY-NEGAIISEEHISQLVTSNIEESIFVLIDKIIKKDKQQAIELLSDMLKKKEEPIKIIA 238

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             +++   L  +         S  +I ++   +  P++  +  E+ + ++   +++ L  
Sbjct: 239 LLVRQI-RLILLVGELSSRGKSINQIAKELNMHSYPVQ--LAAENTQYYDPKSLQKHLVD 295

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIA 339
           + +  H   K+    K I  +  + + 
Sbjct: 296 LIYIDHQI-KRGQTSKTIALEQFIAVI 321


>gi|153835762|ref|ZP_01988429.1| DNA polymerase III, delta subunit [Vibrio harveyi HY01]
 gi|148867553|gb|EDL66884.1| DNA polymerase III, delta subunit [Vibrio harveyi HY01]
          Length = 339

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 113/306 (36%), Gaps = 19/306 (6%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           V++ +G++  LI E    I    +         F++      +   + +  ++   + SL
Sbjct: 19  VYLIFGNEPLLIQESRQAIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALSL 72

Query: 80  FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           FS +++I +E         +   L  +      + ++++  +++ K     K   K  S 
Sbjct: 73  FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWF-KALSA 131

Query: 138 LA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +SC   +   L   ++           +++ Q+L     G+  A    L+KL+   
Sbjct: 132 KGDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-L 190

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D  +T   +++ +   +       I+A + GK   A  +     A  + +  L+    
Sbjct: 191 YPDGELTVVRLEEALSRHNHFTTFHWIDALLAGKANRAQRILRQLEAEGIETIILIRSVQ 250

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++F  L  +H       +S  ++ +K    +   KR     +L   + + +   L  + H
Sbjct: 251 KEFNQLLNMHRDLTQMGMS--QVFEKHR--VWQNKRPFYNAALTRLSASRICALLSLLAH 306

Query: 316 RIHLAR 321
               A+
Sbjct: 307 AEIKAK 312


>gi|219670322|ref|YP_002460757.1| DNA polymerase III subunit delta [Desulfitobacterium hafniense
           DCB-2]
 gi|219540582|gb|ACL22321.1| DNA polymerase III, delta subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 332

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 12/277 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E  +  Q   KN   S  V ++YG ++  I E   Q  KN  +      S + + + +  
Sbjct: 3   EIDQVRQGIVKNQIPS--VNLWYGEERFFIQE-ALQLLKNSYLAQDPSGSGIEILSGKST 59

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE 120
                     N+ S F   K+I++E++      +   L+              ++  +  
Sbjct: 60  G-PEQIVEIANTVSFFGG-KLIIVEDIPYFQDGQGDALEPFFAYFENPNPGTCLVFLAQS 117

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + +     K  EK  S+L     P  +      ++  L    K++  + K + L   G  
Sbjct: 118 VNRGRKFFKAIEKKGSILEFVS-PKRQQEWSAWLDRELAARGKTMKPQVKALFLEWGGHQ 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A   EL KL+ +      I  + V+ ++       + E+++A        A+      
Sbjct: 177 VGALSQELDKLALFVEG-KEIRTEDVRSLVPQAVEATVFELLDAVAARSSKEAVQKLQQV 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
           L     S  +L    ++ +LL     +++    + E 
Sbjct: 236 LRQ-EHSLKVLTLLSRQVRLLLGARAMRQQGRGAEEA 271


>gi|312127089|ref|YP_003991963.1| DNA polymerase III subunit delta [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777108|gb|ADQ06594.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 335

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 136/349 (38%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KSKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVKF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + ++++ +N       ++   +   ++ I      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSNLNLSAIIDNIKNFRSDST 115

Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II    ++ E K  + L++IA      L     PD    L+  ++  +    K+IS+  
Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAE--LVQPSMPD----LVKWVQNVMSKEGKTISENM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T   +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
                         +     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 TEGGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++    +  + ++  + K     ++ +K +  ++  +   +  I
Sbjct: 287 DK--YKKQAESFTLDKIKSIIQKTIEYEYMIKKGQIDDETALEMLLYQI 333


>gi|28897499|ref|NP_797104.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878359|ref|ZP_05890714.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AN-5034]
 gi|28805711|dbj|BAC58988.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308090265|gb|EFO39960.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AN-5034]
          Length = 339

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 115/303 (37%), Gaps = 13/303 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           +++I +E         +   L+ +      + +++I   ++ K     K   K  +    
Sbjct: 76  RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +SC   +   L   ++           +++ Q+L     G+  A    L+KL+     D
Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++F
Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
             L  +H  ++ + +   ++ +K    +   KR +   +L   + + +   +  +     
Sbjct: 254 NQLLSMH--QDLTQMPISQVFEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEI 309

Query: 319 LAR 321
            A+
Sbjct: 310 KAK 312


>gi|113474113|ref|YP_720174.1| DNA polymerase III subunit delta [Trichodesmium erythraeum IMS101]
 gi|110165161|gb|ABG49701.1| DNA polymerase III, delta subunit [Trichodesmium erythraeum IMS101]
          Length = 316

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 120/320 (37%), Gaps = 17/320 (5%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS----T 93
           +N  +++        F+   +             N+  +    S  + + + + +     
Sbjct: 5   VNALRQSFLDPIWTSFNYDKILPTT--DAPQIALNQAMTPPFGSGYRFVWLVDTTITQHC 62

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEKFTSVLAISCYPDNKI 148
            + +L+ LE  + +     +++  +       +K    ++K A K      I  +     
Sbjct: 63  SESLLEDLEITLPQVPETTVLLFTTPNKPNQKLKSTKLIQKWA-KVRDFSLIPPWKTEL- 120

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            L   ++E        ++      L   LG DR    +EL KL  Y  +D ++  + +  
Sbjct: 121 -LEQQVKEIAQEMGVKLTPTGITFLAEALGNDRQKLHSELTKLQLYISQDTVLDLEVITT 179

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +I       + ++  A   G+   A+ L +  +A       ++   + +F+    + ++ 
Sbjct: 180 LIGSQTQSSL-KLAAAIRSGETVKALELVENLIAHNEHPLRIVATLVGQFRTWLWVKLMI 238

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
           E      EK I +  +   P +   L++ ++  + N +++TL  +   + ++ K+   E 
Sbjct: 239 EIGEKD-EKAIAQAAEINNPKRVYFLRQEVKSLSLNQLQKTLPLLLE-LEVSLKQGKEEI 296

Query: 329 NIIFQTILYIAQTACKNNNF 348
           +I+   I+ + Q      NF
Sbjct: 297 SILKTKIIELCQLLSSKRNF 316


>gi|78048491|ref|YP_364666.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926332|ref|ZP_08187664.1| DNA polymerase III subunit delta [Xanthomonas perforans 91-118]
 gi|78036921|emb|CAJ24614.1| DNA polymerase III delta subunit [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543283|gb|EGD14714.1| DNA polymerase III subunit delta [Xanthomonas perforans 91-118]
          Length = 343

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 109/308 (35%), Gaps = 13/308 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +   +   +S++ L     V++  G +   + E  +  +            +   + 
Sbjct: 1   MMELRPEQLAGQSSQPLQ---PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADG 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
            E   + +      N+ SLFS ++++ +   +    K   + +         + +++I +
Sbjct: 58  REF--DWNQLDASFNAPSLFSPRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITA 115

Query: 119 NEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           N+  K +   K AE    +  I+  +      L D IE  L          A Q L   +
Sbjct: 116 NDWSKAHH-GKWAEAVGRIGTIAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERV 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  E+ KL+    +   +  + ++ ++ D     +  +   T+ G+    I + 
Sbjct: 175 EGNLLAAAQEIDKLALLA-DGKTLDLEAMESLVADAARYDVFRLAETTLSGQPAAVIRML 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                      AL+   +++      +    + +  +    ++     +   ++   + +
Sbjct: 234 AGLRGEGEAVAALMPILIKELLRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRA 290

Query: 298 LRIWNKNL 305
           L+   +  
Sbjct: 291 LQRHPEPH 298


>gi|91776509|ref|YP_546265.1| DNA polymerase III, delta subunit [Methylobacillus flagellatus KT]
 gi|91710496|gb|ABE50424.1| DNA polymerase III, delta subunit [Methylobacillus flagellatus KT]
          Length = 338

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 93/250 (37%), Gaps = 7/250 (2%)

Query: 75  NSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            S SLF+ ++I  I + +          L  +    I + + I+   +++++        
Sbjct: 68  QSISLFASRRILEIAVPSGKPGVDGGKALTALAEHAIPDTVTIVILPKLERDAKNSAWFA 127

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 ++++ +      L   I   L    ++  +E  + L   + G+ +A+  E+QKL
Sbjct: 128 ALENHGVSLALHEVAPSALPQWIANRLAGQGQNTDQETLEFLAHQVEGNLLAAHQEIQKL 187

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                 +  +    V++ + +       ++ +A + G   +A+ +            A++
Sbjct: 188 GL-LYPEGTLDGSKVREAVLNVSRYDAFQLGDAVLSGDSEHAVRILHGLREEGAQPVAIM 246

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                  + L K+    E    +    +Q+    I   ++N+++ +L   +   +   L 
Sbjct: 247 SALAWVLRGLVKVKY-AESRGGNLNSAMQQAR--IYGERQNLVKRALSRLSMRQLEAALQ 303

Query: 312 KIDHRIHLAR 321
           K+      A+
Sbjct: 304 KLAEIDKAAK 313


>gi|119509869|ref|ZP_01629012.1| hypothetical protein N9414_11709 [Nodularia spumigena CCY9414]
 gi|119465478|gb|EAW46372.1| hypothetical protein N9414_11709 [Nodularia spumigena CCY9414]
          Length = 331

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 126/336 (37%), Gaps = 18/336 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   I + +   +  I       F+   L+  +    I+   NE+ +    +
Sbjct: 2   PIYVYWGEDDFAIEKAVTILRDRILDPLWTSFNYTSLSPDQPDAAIAGL-NEVMTPPFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             +++ + N +      + +L  L   +     N  +++ +       +K    L+K A+
Sbjct: 61  GGRLVWLINTTLCQHCPENILAELTRTLSVIPENSWLLLTTRNKPDERLKSTKLLKKSAD 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +F     I  +  +   L+  + +        ++    +IL   +G D     NE++KL 
Sbjct: 121 EFREFPLIPPWKIDL--LVQSVNQVAQTVGVKLTNRTAEILAEAVGNDTRLLYNEMEKLR 178

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y  +    +  + +  ++ +T    ++ +  A   G+   A+ +    + +  P   ++
Sbjct: 179 LYTSDRGKPLDVETITQLVRNTTQNSLQ-LAAAIRMGETAKALTILADLINAAEPGLKIV 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F+    + I  E    +  + I K  +   P +   LQ+ ++  +   +   L 
Sbjct: 238 ATLIGQFRTWLLVKIAMETGERNP-QAIAKLAEINNPKRIYFLQQEVKSLSVQQLISCLP 296

Query: 312 KIDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNN 346
            +         K+   +    QT ++ + Q   +  
Sbjct: 297 LLLE--LEVSLKQGATEAQTLQTKVIELCQVCQRGG 330


>gi|255030343|ref|ZP_05302294.1| DNA polymerase III subunit delta [Listeria monocytogenes LO28]
          Length = 250

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 3/176 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N+  L   IE  L      +S+EA   L+    G    + NELQKL  YC +   IT Q 
Sbjct: 53  NENELKKWIEAKLSENNMQMSQEAITRLIELTSGQLTTAMNELQKLMLYCFDTKEITIQD 112

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++  +    I  +++  I   I  A+ +    L  K     +L     +F+LL ++ 
Sbjct: 113 VESLVVRSLEQNIFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLK 172

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           ++ E    S ++   K +  + P +  +  +  + + +  + + L ++       +
Sbjct: 173 LL-EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMK 225


>gi|309775364|ref|ZP_07670369.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916881|gb|EFP62616.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 322

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 122/327 (37%), Gaps = 16/327 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG ++ L+ E + +  K      +    L  +       ++ T   +  +   FS  
Sbjct: 6   YVLYGEEQYLLQESLTRIVKEHVPDAN---ELNKIVYDADITDMETILEDATTIPFFSAC 62

Query: 84  KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           KIIL+ +      + E  V     E  +       +++   + +K +  +KI +K   + 
Sbjct: 63  KIILVYHANFLGTANEHAVDTAALERYLDQPMESTVMVLIGDFEKLDARKKIVKKVQKTC 122

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             +     ++      ++E +      +   A Q LL  L  D    + EL+KL  Y   
Sbjct: 123 RVLQYRKLDEQGKYSYVQEQIKKRGLQVEPSAMQALLNRLPLDIRTIQTELEKLELY--- 179

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             +I+   V+ ++       + +++NA ++  +  +  +          +  L+     +
Sbjct: 180 GGMISADVVEKLVTRPLEEDVFQLVNAVVERNLKKSFHMWQDLCVLNKDAIYLIALLASQ 239

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F+ L ++  +        + I  + +    P +  +  ++ +  +   + E L ++   +
Sbjct: 240 FRFLYEVKALM-LQGKGKDAIKDELKA--HPYRVQLTMKTAQRLSIGYLMEILEQL-ATL 295

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344
               K   L+K + F+  L   Q   +
Sbjct: 296 DQNLKAGRLDKKLGFEMFLLGIQGVRQ 322


>gi|285019238|ref|YP_003376949.1| DNA polymerase III delta subunit protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474456|emb|CBA16957.1| probable dna polymerase III delta subunit protein [Xanthomonas
           albilineans]
          Length = 344

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 119/353 (33%), Gaps = 23/353 (6%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   + + +        H V++  G +   + E  +  +            +   +  +
Sbjct: 2   ELRPEQLLTQPAAQPL--HPVYLIAGPETLRVLEAADAVRARARAAGIGEREVFDADGRD 59

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +    ++  NS SLFS +++I +   +    K+  + +         + +++I  NE
Sbjct: 60  FDWD--QLYSSFNSPSLFSPRRLIELRLPSGKPGKEGSEVIAAFCADPPPDVVLLITCNE 117

Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
             K +   K A+    +  I+  +      L D IE  L          A Q L   + G
Sbjct: 118 WSKAHQ-GKWADAVGRIGVIAVAWAIKPHELGDWIERRLRGKGLRADAGAVQRLAERVEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E+ KL+        +    ++ ++ D     +  +  AT+ G+      +   
Sbjct: 177 NLLAAAQEIDKLALLSDGQG-LDVAAMESLVADAARYDVFRLAEATLGGQAPAVRRMLAG 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL- 298
             A      ALL   +++      +  ++        ++  +    I   ++   + +L 
Sbjct: 236 LRAEGEAVAALLPILIKELLRTAVLAKVQAAGGNLAAEMKAQ---GIWEARQAPFKRALQ 292

Query: 299 -----RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
                R W          +ID    +A+ +   +  I  + +L     A    
Sbjct: 293 RHCAPRRW--ERFAAEAGRID---RIAKGRADGDAWIALERLLLAVAEARAVR 340


>gi|289668265|ref|ZP_06489340.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 342

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K  E    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWTEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|88798828|ref|ZP_01114410.1| DNA polymerase III, delta subunit [Reinekea sp. MED297]
 gi|88778308|gb|EAR09501.1| DNA polymerase III, delta subunit [Reinekea sp. MED297]
          Length = 347

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 115/291 (39%), Gaps = 9/291 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V    G +  L+ E  +  + + +        ++ ++A   + + +       S SLF 
Sbjct: 19  PVIWLSGDEPLLLIEAGDAVRASATAQGISERRVLEVDA---RWDGADLIAANQSMSLFG 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139
           ++++I +        K    L E +     +++++I S  I+   +  K   +   S   
Sbjct: 76  ERELIELRLQAKLSDKGRKALLEYVHSANPDNLLLIVSERIEAAQSKAKWFTQVQESGWW 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +  +P     L   I + +         +A  +L   + G+ +A++ E+ KL+    E+ 
Sbjct: 136 VPIWPIEYSQLPGWIAQRIKQAGLQAEPDAVSLLAERVDGNLLAAKQEIDKLALLA-EEG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT + +   + D+    + ++ ++ ++G +  A+ +     +       +L    ++ +
Sbjct: 195 GITTELILASVSDSSRYTVFDLSSSFLRGDLSRALKVLHTLESEGTEPPVILWLISRELR 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L+ ++         +   + +K    I   +++  Q +++    +  ++ L
Sbjct: 255 LVLEL-AEAHARGQALNGLFKKLR--IFEKRQSDYQRAVQRAPASHYQQCL 302


>gi|327393107|dbj|BAK10529.1| DNA polymerase III delta subunit HolA [Pantoea ananatis AJ13355]
          Length = 343

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 112/302 (37%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  + +      +      L+A   Q +  + +    S SLF++ 
Sbjct: 21  YLLTGNEPLLLQESADAIRASALAQGFEEHLSFTLDA---QTDWDSLFMNCQSLSLFAQH 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           + + ++         + + L ++      + ++I +  ++ K        +      + +
Sbjct: 78  QTLTLQFPENGPNAAIAEQLIKLAPLLHADILLICRMAKLSKAQENSAWFKALSAHAVLV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C    +  L   +       +  I   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 PCQTPEQAQLPRWVVSRAKTLKLDIDDAAVQLLCYCYEGNLLALAQALERLSL-QWPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A+ +       +     LL    +    
Sbjct: 197 LTLPRVEAAVSDAAHFTPYHWVDALLGGKSRRALHILQQLEREESEVAILLRTLQRDLMT 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +H+ +  S      ++ +    I   +RN+  E+L+  + + +++ +H +       
Sbjct: 257 L--LHLQRHQSQQPLRTLMDQQR--IWQNRRNLFTEALQRLDASRLQQAIHLLMQIELTL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|226311589|ref|YP_002771483.1| hypothetical protein BBR47_20020 [Brevibacillus brevis NBRC 100599]
 gi|226094537|dbj|BAH42979.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 345

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 115/305 (37%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L  + +   +K +        ++ + +  E    +S    +  +     
Sbjct: 17  PIYVLYGPESFLAEDFLAVARKEMIDPEFMDLNMSMYDCTET--GLSEILQDAETLPFMG 74

Query: 82  KKKIILIENL---STEKKVL------DCLEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130
           + ++++       +  K         D L + +        +I+  +++++ +   L K 
Sbjct: 75  EHRLVIARQAYFLTGSKPSTKVESDPDALLDYLQNPPPYTTLILHTEADKLDERKKLVKT 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   V+      D    L   +E      Q  I ++    L+  +G +      E++K
Sbjct: 135 LQQKAKVIPFPLLKD--GDLYGWVERQAGKYQAKIDRQQTMKLVERVGAELRLLDKEIEK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           ++ +      IT+  ++ +   T    +  +I     G++  A+ +    + +      L
Sbjct: 193 MALFVGVGESITDDAIELLGARTLEQDVFGLIEQVASGRLDKALRMMYDCMKTGEEPIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L    ++F++L  +H+ +       ++ +    K      +  ++++ R +++  +++ L
Sbjct: 253 LALLARQFRML--LHVKQLAPRGYSQQQVAGMIKMHPYAVKKAMEQA-RHFSEESLKKLL 309

Query: 311 HKIDH 315
             +  
Sbjct: 310 GILAE 314


>gi|21243506|ref|NP_643088.1| DNA polymerase III subunit delta [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109067|gb|AAM37624.1| DNA polymerase III delta subunit [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 342

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K AE    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVISRFCANPPPDVVLLITANDWSKAHH-GKWAEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  +   T  G+    I +            AL+   +++ 
Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRGEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPH 297


>gi|262165196|ref|ZP_06032933.1| DNA polymerase III delta subunit [Vibrio mimicus VM223]
 gi|262024912|gb|EEY43580.1| DNA polymerase III delta subunit [Vibrio mimicus VM223]
          Length = 342

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E     +K         F      + +   + S+ ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + I+++   ++ K        +  +   
Sbjct: 74  SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I+C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWINCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSKALFRLVGILTKAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|114561886|ref|YP_749399.1| DNA polymerase III, delta subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114333179|gb|ABI70561.1| DNA polymerase III, delta subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 344

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 102/290 (35%), Gaps = 10/290 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ +G D  LI E   Q   N +      F   V  + E   N      E  + SLF+ +
Sbjct: 19  FLLFGDDPWLI-ENSKQLILNAAKKQG--FEERVQLSQETGFNWGDLVQEWQAMSLFASR 75

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II +         +     + ++     + ++II+  +     T  K  +      + +
Sbjct: 76  RIIELTLPQGKPGMEGAAAFQTLLQHPNPDMLLIIQGPKASAEQTNSKWFKSLDAKGIYL 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++  +   + ++  +AK +L     G+ +A+   +Q L         
Sbjct: 136 PCTTPEGKQFERWLDSRISHYELTVHHDAKAMLFTLFEGNLLAAEQAMQLLQLLS-PKQN 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT + + +   D     + ++ +A +     +A  +     A       L+    ++  L
Sbjct: 195 ITPEQLSEYFEDQSRFSVFQLCDAILGNHQKHAQHMLAQLQAEGTAMPILMWALFKEINL 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L  + +    +     K+  +    I   ++ + Q ++   + + +   L
Sbjct: 255 LLTLKLAVH-NGEQLSKLWSQHR--IWDKRKPLYQAAITRLDLDHIEHML 301


>gi|294666090|ref|ZP_06731349.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604149|gb|EFF47541.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 342

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K AE    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVISRFCANPPPDVVLLITANDWSKAHH-GKWAEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  +   T  G+    I +            AL+   +++ 
Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRGEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPH 297


>gi|318042954|ref|ZP_07974910.1| DNA polymerase III subunit delta [Synechococcus sp. CB0101]
          Length = 325

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 111/330 (33%), Gaps = 21/330 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D+      ++   +  +       +L  L+  +  +       E  +     
Sbjct: 2   PIHLLWGDDEAARTRAVDTLIREHTDPAWQSINLARLDGNDTSQATQAL-EEARTPPFGG 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLR-------- 128
             ++++++          ++ + LE  +     N  ++++ S   K +  LR        
Sbjct: 61  GDRVVVLQRSPFCNQCPAELAEQLEASLALIPDNCHLLLVNSG--KPDGRLRTTKALQKL 118

Query: 129 -KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  E       +    D    +  L++ +       +   A + L   +G D     +E
Sbjct: 119 VKAGEAKEQSFQLPAVWDGAGQVE-LVQRTARELGLQLEPAAAEALSEAIGSDSARLASE 177

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL+ Y      IT   V+ ++       ++ + +A + GK   A+ L D  L +  P+
Sbjct: 178 LEKLALYVGAQ-AITTAAVEALVGSHATNALQ-VGDALLAGKPAEAVALVDALLEANEPA 235

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             ++     + +    + ++ +        I +       P +  ++++ +R        
Sbjct: 236 LRIVATLCGQIRGWLWVSLLDQQGESDVNAIAKAAGIG-NPKRIYVMRKQIRGRQPARFL 294

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
             L ++       ++            +L 
Sbjct: 295 ALLRQLLEVEAALKRGSDPGDAFRDGFLLT 324


>gi|295134905|ref|YP_003585581.1| DNA polymerase III subunit delta [Zunongwangia profunda SM-A87]
 gi|294982920|gb|ADF53385.1| DNA polymerase III subunit delta [Zunongwangia profunda SM-A87]
          Length = 334

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 111/309 (35%), Gaps = 23/309 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   + ++ +  + N+       F+ +++   +   +            + +
Sbjct: 18  PIYLLMGEEPYFVDKVADYIEDNVLHEEEKGFNQIIMYGRDTNVD--DIVGNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           ++++++++      + +D L +         ++++  K   + K   + K  +K   +L 
Sbjct: 76  ERQVVIVKEAQDLARTIDKLSDYAENPQPTTVLVLCYKHKTLDKRKKVYKTIKKSGVIL- 134

Query: 140 ISCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                 +   L      D I  +L      IS +A Q+L+  LG D     NELQKL   
Sbjct: 135 ------DSKKLYENQVSDWIVRNLKSRSLGISPKASQMLVEFLGTDLGKIDNELQKLQLV 188

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           C +   +T + ++  I  +      E+  A        A  + ++F  +    P    + 
Sbjct: 189 CEKGTDVTPELIEQNIGISKDFNNFELRKAVGLKDEIKAHRIINYFSQNPKDNPLVVTIS 248

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
                F  L + H + + S ++  K  Q            +   + R +    V   ++ 
Sbjct: 249 LLFSYFSQLLQYHGLSDKSKMNVAK--QLKVNPYFVNDYTL---AARNYPMKKVSYAINV 303

Query: 313 IDHRIHLAR 321
           +      ++
Sbjct: 304 LQEADVKSK 312


>gi|297180233|gb|ADI16453.1| DNA polymerase III, delta subunit [uncultured bacterium
           HF770_11D24]
          Length = 374

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 121/374 (32%), Gaps = 47/374 (12%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNIST 69
            K    +  + + +G +  L+ E  +Q             H+     V NA    + ++ 
Sbjct: 4   PKPQLPAEPLCLIFGDEDFLVRERASQVFEGWCAAAGGEDHEIVDGTVRNAAGALEALAK 63

Query: 70  FWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIK----NICNHIIIIK 117
               + +   F   K++ +           ++ ++V D L  +       +     ++I 
Sbjct: 64  LNEAVQTLPFFGGAKVVWLRAANFLGDERTASSREVTDRLNGLAKDWETFDWQGVQVLIS 123

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS--CYPDNKIHLMD--LIEESLLIGQKSISKEAKQIL 173
           S +I K    +   +    + A+      D +       ++ + L    K I+      L
Sbjct: 124 SGKIDKR---KAFFKSAKKIAAVEDLSVADKERGSKAALVVGQRLAELGKKITSHVADEL 180

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           +   G +      E  KL++Y      +T Q V +I   T       + +A  +  +   
Sbjct: 181 VLLAGSNLQQMHTEADKLAAYVGGRDEVTRQDVHEIATRTKQAQAFALADALGERNLPKL 240

Query: 234 IMLADFF-----LASKMPSHALLHGFLQK------FQLLEKIHIIKECSNISFEKIIQKT 282
           + + D       L +K    ALL+G + K       + + ++  I+        K   + 
Sbjct: 241 LRVLDEELWVVKLDAKKSPIALLYGLISKVRTMIFLKEMLRLKWIRAGGGYPQFKSQLEA 300

Query: 283 EK-NIIPMKRNILQESL------------RIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329
                +P  R    +++            R +++  +   +  +             +  
Sbjct: 301 IPDERLPDDRKFNPKAMHPYMLFNALGHARRYSEEELTRAMAILLACNRQLVSSSTDDTL 360

Query: 330 IIFQTILYIAQTAC 343
           ++ Q ++ I   A 
Sbjct: 361 LLQQALVQIVSKAA 374


>gi|253995953|ref|YP_003048017.1| DNA polymerase III subunit delta [Methylotenera mobilis JLW8]
 gi|253982632|gb|ACT47490.1| DNA polymerase III, delta subunit [Methylotenera mobilis JLW8]
          Length = 337

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 115/305 (37%), Gaps = 14/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  GS+     E ++  +   +I   D  + +++   E   N     N   S SLFS
Sbjct: 18  PIYVLVGSEPLAQRECLDAIRAAANIQGFDERTSLIV---ERNFNWQQIQNFGQSISLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA---EKFTS 136
            ++++ +   N          L+ +  K + +  +II    +++           E    
Sbjct: 75  SRRLLELNIPNGKPGVDGSKALQALATKALPDTSVIIILPTLEREAKNSAWFAALEAHAQ 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           VL I     +  +L   I   L    +  S++  + L   + G+ +A+  E+QKLS    
Sbjct: 135 VLTI--NEVDAANLPAWIAGRLAQHGQRTSQQTLEFLAHQVEGNLLAANQEVQKLSL-LY 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +++  V++ + +       ++  A + G     + +          + A+++  + 
Sbjct: 192 PQGELSDAAVREAVLNVSRYDAFQLGEAVLAGDAERTVRILQGLQDEGENAVAIMNPLMW 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             + L +I    E    +    +      I   ++ +++ +L   +   +  +L K+   
Sbjct: 252 VLRPLVRIK-QAEMRGTNLTTAMTNAR--IYGDRQALVKRALSRLSLRQLDASLQKLADI 308

Query: 317 IHLAR 321
             +A+
Sbjct: 309 DRMAK 313


>gi|237756119|ref|ZP_04584693.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691723|gb|EEP60757.1| DNA polymerase III, delta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 331

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 133/320 (41%), Gaps = 24/320 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I++ + +++   NL     V I YG +      ++ +FK  + +             
Sbjct: 1   MSEIKASQLLKEF--NLSQLKPVLIIYGDEYLTKTLVVEKFKSVLPVKV--------YWG 50

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIII-----KNICNHI 113
            E+  + ++F N + S  LFS  K I++ +    T+    D L++II      K     I
Sbjct: 51  DEL--DYASFRNHLFSKDLFSSSKAIVVRDFEAFTDNLKKDELKQIIEDIKNIKLPDRLI 108

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +++   ++ K     K   K  +V  +          +  ++  L    K+IS E  + L
Sbjct: 109 LVVNLEKLDKEP--YKAMLKLDNVDVVISKKLTFQGFLTSLKNKLAKEGKAISDENLKYL 166

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
            + L  D   ++NE++KL  Y  +   IT++ +  ++       +   ++   +  I +A
Sbjct: 167 ASLLNNDLTIAKNEVEKLLLYVGDKKEITKEDIDAVVTPVFEENVFNFLDKFFKKDI-SA 225

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           + +    L + +    +    L + +   +  I+ E  N S E+ + K+  N  P+++  
Sbjct: 226 LKIFINLLDNGVHPFEIQSLILSQLEKALQTKILIEAGN-SLEEALDKSGIN-HPLQKAN 283

Query: 294 LQESLRIWNKNLVRETLHKI 313
           +   L+  +K  + + L  +
Sbjct: 284 ISNILKNLSKEEMVKLLSNL 303


>gi|237747341|ref|ZP_04577821.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS]
 gi|229378692|gb|EEO28783.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS]
          Length = 338

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 120/327 (36%), Gaps = 15/327 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G +  L+ E  +  +K     +   F    +  +E            N+ SLF  
Sbjct: 19  LYVLTGDEHLLLLEAADMIRKAARDRH---FGEREILTVERGFKWGQLHAANNAMSLFGG 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +K+I   I      K+    L+E   +   +++ +I   ++   +           + + 
Sbjct: 76  RKLIELRIPGGKPGKEGSQTLQEYAAELNPDNVTLITLPKLDWASQKTAWVSALQKNGIY 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I         L + I E L    ++ +K+    L+  + G+ +A+  E+QKL      + 
Sbjct: 136 IEIPSIELSRLGNWISERLKKQNQTANKQGIDFLVERVEGNLLAAHQEIQKLGL-LYPEG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + + + + +     I ++  A + G     I + +       P   +L  F ++ +
Sbjct: 195 ELGFEQICNSVLNVARYDIFKLNEAMLGGNRARFIRMMEGLKGEGEPLPLILWTFTEEIR 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316
            L K     E          +     +   +  ++Q ++    K  ++  L    +ID  
Sbjct: 255 TLLKCKTALESGQTFPATA-KTLR--LRGQREKLIQMAVNRLEKKDLQIALQQTAQIDKI 311

Query: 317 IHLARKKKYLEKN--IIFQTILYIAQT 341
           I   R   +++     + Q  L+IA+T
Sbjct: 312 IKGLRSDSWMDDAWDALMQLGLFIART 338


>gi|312792993|ref|YP_004025916.1| DNA polymerase III subunit delta [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876461|ref|ZP_07736445.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796819|gb|EFR13164.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180133|gb|ADQ40303.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 335

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 138/349 (39%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KSKEIIKELNSQLLKRDFKKIYLFYGQEIFLIDEYTRRFSHAIVGGNLN--NIVRF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + ++++ +N       ++   +   ++ +      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSSLNLSAIIDNLKNFKSDST 115

Query: 113 IIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II    ++ E K  + L++IA      L     PD    L+  ++  +    K+IS+  
Sbjct: 116 YIIFKEYEAKENKLFSALKQIAFSAE--LVQPSMPD----LVKWVQNVMSKEGKAISENM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T   +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           + +           K     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 LESGYKYLRELYQLKTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++    +  + ++  + K     ++ ++ +  ++  +   +  I
Sbjct: 287 DK--YKKQAETFTLDKIKAIIQKTIEYEYMIKRGQIDDETALEMLLYQI 333


>gi|308186024|ref|YP_003930155.1| DNA polymerase III, delta subunit [Pantoea vagans C9-1]
 gi|308056534|gb|ADO08706.1| DNA polymerase III, delta subunit [Pantoea vagans C9-1]
          Length = 343

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 99/264 (37%), Gaps = 8/264 (3%)

Query: 62  EIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           + Q +  + +    S SLF++++   +     +    + + L ++      + ++I +  
Sbjct: 56  DAQTDWESLFVSCQSLSLFAQRQTMTLQFPENAPNAAMAEQLVKLSQLLHADILLICRMP 115

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ K        +    S + + C    +  L   +       + S+   A Q+L     
Sbjct: 116 KLTKAQENSAWFKALSASAVLVPCQTPEQAQLPRWVVNRAKALKLSVDDAAVQLLCYCYE 175

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A    L++LS     D  +T   V++ + D         ++A + GK   A+ +  
Sbjct: 176 GNLLALAQALERLSL-QWPDGKLTLPRVEEAVSDAAHFTPFHWVDALLAGKSRRALHILH 234

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                +     LL    +   LL  +H+ +  +      ++ +    I   +R +  ++L
Sbjct: 235 QLEKEESEVVILLRTLQR--DLLILLHLQRHQAQQPLRTLMDQQR--IWQNRRALFTDAL 290

Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322
           +  +   ++  +H +       ++
Sbjct: 291 QRLDATRLQRAIHLLSQIEITLKQ 314


>gi|289663241|ref|ZP_06484822.1| DNA polymerase III subunit delta [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 342

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K  E    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWTEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRADAGAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAEITFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|260597065|ref|YP_003209636.1| DNA polymerase III subunit delta [Cronobacter turicensis z3032]
 gi|260216242|emb|CBA29153.1| DNA polymerase III subunit delta [Cronobacter turicensis z3032]
          Length = 343

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 107/305 (35%), Gaps = 11/305 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++  G+D  L+ E  +   +         F       +++  +    ++   + SLF
Sbjct: 18  RAAYLVLGNDPLLLQESQDAIHQQAQAQG---FEEHHRFIIDVSTDWQAIFSLCQAMSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++ +L+   +      + + L  ++     + ++I++ N++ K               
Sbjct: 75  ASRQTLLLALPDNGPNAAINEQLATLVSLLHDDLLLIVRGNKLTKAQENAAWFTALADRA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + I+C    +  L   +          +   A Q+L     G+ +A    L++LS     
Sbjct: 135 VQITCQTPEQAQLPRWVANRAKQMNLQLDDAACQLLCYCYEGNLLALAQALERLSL-IWP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A + GK   A+ +             LL    ++
Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILQQLRQEGAEPVILLRTLQRE 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L  +   ++ +      +  +    +   +R ++ E+L   + + + + +  +    
Sbjct: 254 LLTLVTLK--RQSATTPLRALFDQHR--VWQNRRALITEALSRLSDDRLWQAVRLLTQCE 309

Query: 318 HLARK 322
              ++
Sbjct: 310 ITLKQ 314


>gi|327483679|gb|AEA78086.1| DNA polymerase III delta subunit [Vibrio cholerae LMA3894-4]
          Length = 342

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  HPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNVVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|213963243|ref|ZP_03391500.1| DNA polymerase III, delta subunit [Capnocytophaga sputigena Capno]
 gi|213954105|gb|EEB65430.1| DNA polymerase III, delta subunit [Capnocytophaga sputigena Capno]
          Length = 337

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 109/305 (35%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + +  + ++       F  +VL   ++   +    +      + S
Sbjct: 18  PIYFLMGEEPYFIDIVSDYIEDHVLQEDQKGFDQIVLYGQDVT--VPAIIDYARRFPMMS 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +++I+++     +  +D L   +       +++   K  ++     L K  +K    + 
Sbjct: 76  DRQVIIVKEAQNLRATIDQLVPYVENPTPTTVLVFCYKYEKLDARKKLLKTLQKNKDCVL 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +      +  ++  + + L     SI  +A Q+L+  LG D    +NE+ KL+    E+ 
Sbjct: 136 LESKKLYENQVVAWLPDVLKKKHLSIQPKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            +T + ++  I  +      E+ +A      Y    +   F  +    P    L      
Sbjct: 196 EVTPEIIEKNIGISKEFNNFELKSAIAANDAYKIARILKHFADNPKDNPLVMTLTVLYGY 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           FQ L   H + + ++ +   ++   +  +          +++          + ++   I
Sbjct: 256 FQQLLAFHGLTDQTDKN---VMATLKVPVF---------AIKDLRSGAQHYPMKRVSAII 303

Query: 318 HLARK 322
              R+
Sbjct: 304 ATLRQ 308


>gi|329905567|ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547564|gb|EGF32367.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 312

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 105/312 (33%), Gaps = 24/312 (7%)

Query: 37  LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTE 94
                 +   +     F    L A   ++            SLF  +K+I +        
Sbjct: 15  RAQGLSERDVLQVDRSFKWGELTAANNEQ------------SLFGDRKLIELRLPTGKPG 62

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDL 153
           K+    L++       +++ +I   ++               S + I      +  L   
Sbjct: 63  KEGGQALQQYAASPNPDNVTLITLPKLDWATAKAAWVGTLQQSAVYIEIPLIERNQLPGW 122

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           I   L    +S  ++A   +   + G+ +A+  E+QKL      D  ++ + V D + + 
Sbjct: 123 ISTRLAAQGQSAERDALNFMAERVEGNLLAAHQEIQKLGL-LHGDGQLSFEQVHDAVLNV 181

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
               + ++  A + G +   + + D           +L    ++ + L KI    E    
Sbjct: 182 ARYDVFKLNEAMLAGDVARLVRMLDGLQGEGEALPLVLWAVAEEIRTLLKIKTAME-QGQ 240

Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLARKKKYLEKN- 329
              +++++    I   +  +++ +LR  +   +   + K   +D  +   R         
Sbjct: 241 PVGQLLKQYR--IWGPREKLMEPALRRLSMATLEAAIQKAAQLDRLVKGLRAPALAGDAW 298

Query: 330 -IIFQTILYIAQ 340
             + Q  L +A+
Sbjct: 299 DAMRQLALGVAR 310


>gi|282898920|ref|ZP_06306904.1| DNA polymerase III, delta subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196231|gb|EFA71144.1| DNA polymerase III, delta subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 341

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 125/337 (37%), Gaps = 17/337 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I++G D   I + +   +  I       F+       +    I    N++ + S  +
Sbjct: 2   PIYIYWGEDDFAIEKAVTLLRDRILDPLWTSFNYTTFLPDQGDSVIQAL-NQVMTPSFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133
             +++ + N +      + +   L+  +     +  +++ S        K+  L K    
Sbjct: 61  GGRLVWLINSNLCQNCPENIFSELKRTLPVIPESSFLLVTSPNKPDERLKSTKLLKQFAD 120

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           F     I  +      L+  + ++       ++ +  + L  ++G D      E++KL  
Sbjct: 121 FREFSLIPPWKTEL--LVQAVNQAAQDIGIKLTPQVAETLAESIGNDSRLLYTEIEKLRL 178

Query: 194 Y-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           Y    +I +T   V  ++ +T    ++ +  A   G    A+ +    + +  P   ++ 
Sbjct: 179 YLASSNIPLTSTIVTQLVRNTTHNTLQ-LAAAIKAGDSAKALGILADLIGAAEPGLRIVA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+    + ++ E    + + I Q  E +  P +   LQ+ ++  +   +  +L  
Sbjct: 238 TLTGQFRTWLWVKMMMESGERNPQAIAQGAEVS-NPKRIYFLQQEVKSLSVEQLVFSLPL 296

Query: 313 IDHRIHLARKKKYLEKNIIFQT-ILYIAQTACKNNNF 348
           +         K+   + +  QT ++ + Q   K+  F
Sbjct: 297 MLE--LEVSLKQGASEILTLQTKVIELCQLYQKSGTF 331


>gi|282897013|ref|ZP_06305015.1| DNA polymerase III, delta subunit [Raphidiopsis brookii D9]
 gi|281197665|gb|EFA72559.1| DNA polymerase III, delta subunit [Raphidiopsis brookii D9]
          Length = 341

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 123/336 (36%), Gaps = 15/336 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I++G D   I + +   +  I       F+       +    I    N++ + S  +
Sbjct: 2   PIYIYWGEDDFAIEKAVTLLRDRILDPLWTSFNYTTFLPDQGDSVIQAL-NQVMTPSFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133
             +++ + N +      + +   L+  +     +  +++ S        K+  L K    
Sbjct: 61  GGRLVWLINSNLCQNCPENIFSELKRTLPVIPESSFLLVTSPNKPDERLKSTKLLKQFAD 120

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           F     I  +      L+  + ++       +  +  + L  ++G D      E++KL  
Sbjct: 121 FREFSLIPPWKTEL--LVQAVNQAAQDVGIKLKPQVAETLAESIGNDSRLLHTEMEKLRL 178

Query: 194 Y-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           Y    +  +    V  ++ +T    ++ +  A   G    A+ +    + +  P   ++ 
Sbjct: 179 YLASSNHPLNSAIVTQLVRNTTQNTLQ-LAAAIKIGDSAEALGILGDLIGAAEPGLRIVA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+    + ++ E    + + I Q  E +  P +   LQ+ ++  +   +  +L  
Sbjct: 238 TLTGQFRTWLWVKMMMESGERNPQAIAQGAEVS-NPKRTYFLQQEVKSLSVEQLVFSLPI 296

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
           +   + ++ K+   E   +   ++ + Q   K+  F
Sbjct: 297 LLE-LEVSLKQGASEIPTLQTKVIELCQLYQKSGTF 331


>gi|319892644|ref|YP_004149519.1| DNA polymerase III delta subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162340|gb|ADV05883.1| DNA polymerase III delta subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 324

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 112/302 (37%), Gaps = 19/302 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            + + +G    LI     Q  +        D F+ V  N  E   N  T   E  +   F
Sbjct: 3   NIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYETTLN--TIIEEAMTLPFF 60

Query: 81  SKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129
           S KKII+++N    + EK         D L E I K     +II  +++ ++ +   + K
Sbjct: 61  SDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASLIIFQVQAVKLDERKKVVK 120

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +K  ++  I      +  +   I + L    K I ++A + L+   G      + EL 
Sbjct: 121 ALKKVANIKKIE--QMTEQEMQKWIHQYLNQSYKEIKQDALEALIQLTGIHYRMIKQELD 178

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  +  +   I ++ V+ I+  +    +  + +   +G+   AI L    +  K     
Sbjct: 179 KLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQKAQAISLVKDLIQLKEEPIK 238

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           LL      +  L     I      S ++I +     + P +  +     R ++ + +   
Sbjct: 239 LLALITSNY-RLYYQSKILNQKGYSGQQIAKTVG--VHPYRVKLALNQARKYDLDTLLTI 295

Query: 310 LH 311
           + 
Sbjct: 296 MD 297


>gi|217969621|ref|YP_002354855.1| DNA polymerase III subunit delta [Thauera sp. MZ1T]
 gi|217506948|gb|ACK53959.1| DNA polymerase III, delta subunit [Thauera sp. MZ1T]
          Length = 336

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 115/328 (35%), Gaps = 13/328 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G++  L+ E  +  +       ++    +V+                 + SLF 
Sbjct: 18  PLWLLHGNEPLLVLEAADAIRAAARRQGYEERETLVVGHGF---KWDALALAAGNLSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+I   I      +   D L+  I       + ++   E+          +    +  
Sbjct: 75  GAKLIDLRIPTGKPGRDGGDALQRYIAHLPSQTLTLVTLPEVDWATRKTAWFKGLADAAT 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +   +  L + +   L   ++S   EA   +  ++ G+ +A+  E+ KL      +
Sbjct: 135 TLELHAPERERLPEWVARRLAAQKQSAPPEALAFIADHVEGNLLAAHQEILKLGL-LHGE 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T + V+D + D     I+++  A ++G       L +           +L     + 
Sbjct: 194 GALTLEQVQDAVLDVARYDIDKLRLAVVEGDPARCARLLEGLEGEGAAPPLVLWALAHET 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L  +   ++         + K E+   P ++  +  +L    +  +R     + H   
Sbjct: 254 RSLATLSAGRDAG--QPLAALFKAERIFDPRRQQAMTRALGRLGQGHLRAA---LMHAAR 308

Query: 319 LARKKKYLEKNIIFQTILYIA-QTACKN 345
           + R  K L    ++   L +A + A + 
Sbjct: 309 IDRMIKGLASGDLWDEFLQLALRLARRG 336


>gi|310829060|ref|YP_003961417.1| DNA polymerase III [Eubacterium limosum KIST612]
 gi|308740794|gb|ADO38454.1| DNA polymerase III [Eubacterium limosum KIST612]
          Length = 337

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPF--SLVVLNALEIQKNISTFWNEINSTS 78
             V++F G +      + N  +  +  T   P    L +    +   +IS   +   +  
Sbjct: 16  RPVYLFAGPE----QYIGNMVEHTLVETVIAPGLEQLNLAVFEDKNPDISEILSVCETLP 71

Query: 79  LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           L S+K+++++   +      +KK ++ L + I +   + ++I+  +   K   + K    
Sbjct: 72  LMSEKRVVIVRESAGLTKTSDKKTVEALNKYIERPSGSTVLILCDSSPDKRKKVYKTL-- 129

Query: 134 FTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILL------ANLGGDRIASRN 186
                AI  Y   NKI L   I   L +  K  S+   +  +       N   +     N
Sbjct: 130 -KEQGAIVDYDKLNKIDLEKWIGRRLKLAGKRTSQRVVEQFVMDTLYLENDNKNMEMVDN 188

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL K+  Y  E   IT + ++ ++  +    + ++++  + G    A+ + + F      
Sbjct: 189 ELNKIIDYVGERDAITLEDIETVMPKSVEDNVFKMVDYAMGGNKGAALKMLNQFYLEGEG 248

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +    L++ +++  + ++ E   +S + I ++ +     +K+  + ++ R +    +
Sbjct: 249 PFGVFGLLLRQIRMMLMVKLLSE-KRMSPDTIAKEAKLAPFVVKK--VLQNGRRYRVAGL 305

Query: 307 RETLHKIDHRIHLARKK 323
           + T+  I+      + K
Sbjct: 306 KRTM--IEAAELDLKMK 320


>gi|313885044|ref|ZP_07818796.1| DNA polymerase III, delta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619735|gb|EFR31172.1| DNA polymerase III, delta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 346

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 133/307 (43%), Gaps = 21/307 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NEINSTSLF 80
            V++ YGS++ L     + F  ++          + L   ++Q++  T   +E N  S F
Sbjct: 18  PVYLLYGSEQYL----QDTFLSSLLDHCRQGQEELDLTRFDLQEDSLTLVLDEANLFSFF 73

Query: 81  SKKKIILIENL-----STEKKVLD----CLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129
           + +++I+++       ++ K + D     L E + +     ++I  +  + + K   L K
Sbjct: 74  ADRRVIVVDQADSLIGASRKSITDKEQAALLEYLAQPNEASVLIFRVLKDNLDKRRKLSK 133

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
              K  + + ++  P ++  +   ++E L  G+  I +E  Q LL     D     +EL 
Sbjct: 134 ALLKEANFVEMT--PMDERAVEAYLKEFLRDGKFKIQREGIQELLIRTNYDLTKVTSELN 191

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+S+   D LIT++ +  ++  +    + E+ NA +  +I  A+ +    L        
Sbjct: 192 KLNSFANPDQLITKKDISLLVPRSLESNVFELSNAVVALQIEKAVKIYRDLLLLNNNPIQ 251

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L    + +F+L  +  I+ E  ++    I +    ++ P +  +  ++ RI + N +++ 
Sbjct: 252 LHALLITQFRLFIQSRILMEAGHL-EGDIAKTL--SVHPYRVKLALKNNRILSLNQLQQF 308

Query: 310 LHKIDHR 316
              +   
Sbjct: 309 YMDLVEA 315


>gi|307822485|ref|ZP_07652716.1| DNA polymerase III, delta subunit [Methylobacter tundripaludum
           SV96]
 gi|307736089|gb|EFO06935.1| DNA polymerase III, delta subunit [Methylobacter tundripaludum
           SV96]
          Length = 337

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 115/304 (37%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   + E+ +  +       +D   ++V ++               S S+F+
Sbjct: 18  PVYFISGDEPLQLGEMADAVRAAARKEGYDSREVLVADSSFSWNE---LTESAGSLSIFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            KKII   + + +        L     +   + +++I + ++   +   +  +    V  
Sbjct: 75  DKKIIDLRLPSGTPGADGSKALIAYCERLPEDTLLLITAAKMAGASLKARWFQALDKVGC 134

Query: 140 I-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLE 197
           +   +P     L+  +++ +         E  +IL + + G+ +A+  E++KL   Y   
Sbjct: 135 VVQVWPLEGQDLIRWLQQRMQRRGLQAETEGIKILASRIEGNLLAAAQEIEKLYVLY--G 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +  ++ Q + D + D+    + +++++ +  ++     +     A  + +  +L    ++
Sbjct: 193 EGRLSNQQISDAVADSSRFDVFKLMDSVLAARVGRIFKILSGLQAEGVAAPVVLWALTRE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            ++L +I         +   + +  +  I   ++ ++ ++L     + +   L       
Sbjct: 253 ARVLIRIK-QALAQGQNRAVVFKNNQ--IWDKRQQLVSDALNRLGDSDLNSILTLSAKAD 309

Query: 318 HLAR 321
              +
Sbjct: 310 RQIK 313


>gi|187735313|ref|YP_001877425.1| DNA polymerase III, delta subunit [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425365|gb|ACD04644.1| DNA polymerase III, delta subunit [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 387

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 97/257 (37%), Gaps = 27/257 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL-----NALEIQKNISTFWNEINST 77
           + + +G+D+G++ E  +     ++   +  FS  +L     ++ E  + +      + + 
Sbjct: 30  IHLVFGTDEGMVREKASGIFAALTEGTN-EFSHEILEAACGDSDEAAQLVRQVMEALRTL 88

Query: 78  SLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIKNIC-NHIIIIKSNEIKKNN 125
             F  +K++ ++N            ST +  LD   +++   +  + +++I ++E  K  
Sbjct: 89  PFFPGRKVVWMKNCNFLGDSVTGRSSTTEAALDSFRQLLESGLGSDVLLLISASEFDKRR 148

Query: 126 TLRKIAEKFTSVLAISCYPDN------KIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           +  K         +      +      +  LM LI +       +    A ++ +  +  
Sbjct: 149 SFNKFL--LQYAASEELNKPDITKAGWEGSLMPLINKETAARGMNFDSAALELFIHRVSE 206

Query: 180 DRIASRNELQKLSSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
                 +E++KL  Y   +   +  + V+ ++  T    I EI  A    K   AI L D
Sbjct: 207 SSRQIISEIEKLDLYLGADRRTVMPEDVERMVPLTRTGVIFEISRALENKKSDAAISLID 266

Query: 239 FFLASKMPSHALLHGFL 255
           F L     +  ++    
Sbjct: 267 FQLERGENAITIMRAAF 283


>gi|126660134|ref|ZP_01731253.1| hypothetical protein CY0110_20495 [Cyanothece sp. CCY0110]
 gi|126618577|gb|EAZ89327.1| hypothetical protein CY0110_20495 [Cyanothece sp. CCY0110]
          Length = 326

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 124/311 (39%), Gaps = 18/311 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS- 81
           ++ F+G D+  I + +   +  I       F+   +   +    I      +    +F  
Sbjct: 3   IYFFWGEDEFAIAQTVQTLRDTILDPNWIQFNYHQIPGEDPNSTIEALNQAMT--PVFGI 60

Query: 82  KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             +++ + N S  ++    +L  L+ I+     N  ++  +N+     +K +  +++ AE
Sbjct: 61  GGRLVWVVNTSIGQQCSEEILTQLQRILPAIPDNSHLLFTTNKKPDKRLKSSKLIQQYAE 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                  I  +  ++  L+  +++        ++ +A ++L  ++G +     NEL+KL 
Sbjct: 121 VREYS-PIPPWKTDE--LIHKVKQVSQEIGVKLTPKAIELLAESVGNNSRQLWNELEKLK 177

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  ++    ++ V   + + +     ++  A  QG    A+ L D  L+   P+  ++ 
Sbjct: 178 LYGQQENKPLDETVIATLVNANAQNSLQLAQAIRQGNQAEALQLIDELLSRNEPALRIVA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             + +F+    I +  E   +  + I +  +    P +   L++ L+  +   +  TL  
Sbjct: 238 TLVGQFRTWTIIQLQLEAGEMDNKIIAKAADIP-NPNRLYFLRKELQKMSGKQLLATLPI 296

Query: 313 IDHRIHLARKK 323
           +       R K
Sbjct: 297 LLD--LETRLK 305


>gi|94311903|ref|YP_585113.1| DNA polymerase III subunit delta [Cupriavidus metallidurans CH34]
 gi|93355755|gb|ABF09844.1| DNA polymerase III, delta subunit [Cupriavidus metallidurans CH34]
          Length = 356

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 115/315 (36%), Gaps = 18/315 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E +++ ++         FS   +   E             S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDRLRRAAREAG---FSERDVLVAERGFQWGQVIEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +KI+   I +    K   + L  +  +   + ++++    +    T     +   S  +
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVMLVTLPRLDFATTKSAWFQALESAGV 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSS 193
           +I     ++  L   + E L + Q+ +        A Q +   + G+ +A+  E+QKL  
Sbjct: 139 SIKVDAVDRTRLPAWVGERLGLQQQRVEPGEPGRRALQFIAEKVEGNLLAAHQEIQKLGL 198

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  +T   V+D + +     + ++  A + G +   + + +        +  +L  
Sbjct: 199 -LYPPGALTFDQVQDAVLNVARYDVFKLSEAMLGGDVPRLVRMLEGLRGEGEATVLVLWA 257

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
             ++ ++L K+             ++++    +   +  ++ ++ +  +   +      +
Sbjct: 258 LTEEIRVLSKVR-QGLAGGKPAGVLMRELR--VWGPRERLVPQAAQRLSMPQLEAA---L 311

Query: 314 DHRIHLARKKKYLEK 328
                L R+ K L  
Sbjct: 312 AMAARLDRQVKGLSD 326


>gi|15640969|ref|NP_230600.1| DNA polymerase III subunit delta [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591020|ref|ZP_01678337.1| DNA polymerase III, delta subunit [Vibrio cholerae 2740-80]
 gi|153820343|ref|ZP_01973010.1| DNA polymerase III, delta subunit [Vibrio cholerae NCTC 8457]
 gi|153823315|ref|ZP_01975982.1| DNA polymerase III, delta subunit [Vibrio cholerae B33]
 gi|153826106|ref|ZP_01978773.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-2]
 gi|153830933|ref|ZP_01983600.1| DNA polymerase III, delta subunit [Vibrio cholerae 623-39]
 gi|183179691|ref|ZP_02957902.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-3]
 gi|227081127|ref|YP_002809678.1| DNA polymerase III, delta subunit [Vibrio cholerae M66-2]
 gi|229505446|ref|ZP_04394956.1| DNA polymerase III delta subunit [Vibrio cholerae BX 330286]
 gi|229510884|ref|ZP_04400363.1| DNA polymerase III delta subunit [Vibrio cholerae B33]
 gi|229518005|ref|ZP_04407449.1| DNA polymerase III delta subunit [Vibrio cholerae RC9]
 gi|229608465|ref|YP_002879113.1| DNA polymerase III subunit delta [Vibrio cholerae MJ-1236]
 gi|254848085|ref|ZP_05237435.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255744737|ref|ZP_05418688.1| DNA polymerase III delta subunit [Vibrio cholera CIRS 101]
 gi|262161129|ref|ZP_06030240.1| DNA polymerase III delta subunit [Vibrio cholerae INDRE 91/1]
 gi|262190525|ref|ZP_06048769.1| DNA polymerase III delta subunit [Vibrio cholerae CT 5369-93]
 gi|298498930|ref|ZP_07008737.1| DNA polymerase III, delta subunit [Vibrio cholerae MAK 757]
 gi|9655412|gb|AAF94115.1| DNA polymerase III, delta subunit [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547130|gb|EAX57262.1| DNA polymerase III, delta subunit [Vibrio cholerae 2740-80]
 gi|126509113|gb|EAZ71707.1| DNA polymerase III, delta subunit [Vibrio cholerae NCTC 8457]
 gi|126519179|gb|EAZ76402.1| DNA polymerase III, delta subunit [Vibrio cholerae B33]
 gi|148873588|gb|EDL71723.1| DNA polymerase III, delta subunit [Vibrio cholerae 623-39]
 gi|149740129|gb|EDM54288.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-2]
 gi|183013102|gb|EDT88402.1| DNA polymerase III, delta subunit [Vibrio cholerae MZO-3]
 gi|227009015|gb|ACP05227.1| DNA polymerase III, delta subunit [Vibrio cholerae M66-2]
 gi|229344720|gb|EEO09694.1| DNA polymerase III delta subunit [Vibrio cholerae RC9]
 gi|229350849|gb|EEO15790.1| DNA polymerase III delta subunit [Vibrio cholerae B33]
 gi|229357669|gb|EEO22586.1| DNA polymerase III delta subunit [Vibrio cholerae BX 330286]
 gi|229371120|gb|ACQ61543.1| DNA polymerase III delta subunit [Vibrio cholerae MJ-1236]
 gi|254843790|gb|EET22204.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255737768|gb|EET93162.1| DNA polymerase III delta subunit [Vibrio cholera CIRS 101]
 gi|262028879|gb|EEY47532.1| DNA polymerase III delta subunit [Vibrio cholerae INDRE 91/1]
 gi|262033598|gb|EEY52092.1| DNA polymerase III delta subunit [Vibrio cholerae CT 5369-93]
 gi|297543263|gb|EFH79313.1| DNA polymerase III, delta subunit [Vibrio cholerae MAK 757]
          Length = 342

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|328472492|gb|EGF43355.1| DNA polymerase III subunit delta [Vibrio parahaemolyticus 10329]
          Length = 339

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 116/303 (38%), Gaps = 13/303 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           +++I +E         +   L+ +      + +++I   ++ K     K   K  +    
Sbjct: 76  RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNTKGD 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +SC   +   L   ++           +++ Q+L     G+  A    L+KL+     D
Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++F
Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
             L  +H  ++ + +S  ++ +K    +   KR +   +L   + + +   +  +     
Sbjct: 254 NQLLSMH--QDLTQMSISQVFEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEI 309

Query: 319 LAR 321
            A+
Sbjct: 310 KAK 312


>gi|153213837|ref|ZP_01949043.1| DNA polymerase III, delta subunit [Vibrio cholerae 1587]
 gi|124115671|gb|EAY34491.1| DNA polymerase III, delta subunit [Vibrio cholerae 1587]
          Length = 342

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++ +G++  L+ E     +K         F      + +   + S  ++   + SLF
Sbjct: 17  HPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWSAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|254285624|ref|ZP_04960588.1| DNA polymerase III, delta subunit [Vibrio cholerae AM-19226]
 gi|150424486|gb|EDN16423.1| DNA polymerase III, delta subunit [Vibrio cholerae AM-19226]
          Length = 342

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 110/304 (36%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+  +   +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLSSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|119899506|ref|YP_934719.1| DNA polymerase III subunit delta [Azoarcus sp. BH72]
 gi|119671919|emb|CAL95833.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 336

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 106/326 (32%), Gaps = 11/326 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G++  L+ E  +  +       +     +V+          +      + SLF 
Sbjct: 18  PLWVLHGNEPLLVLEAADAIRAAARRQGYSERETLVVGQGFRWD---SLTLAAGNMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             K+I   I      +   D L+  + +     + ++   E+          +       
Sbjct: 75  GAKLIDLRIPTGKPGRDGGDALQRYVAQLPAATLTLVTLPELDWQARKTSWFKALGDAGT 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I      +  L   + + L     +   EA   +  ++ G+ +A+  E+ KL       
Sbjct: 135 VIELNAPERERLPQWLAQRLAAQHLTAPAEALAFIADHVEGNLLAAHQEILKLGLLFPHG 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+  + +     I+ +  A ++G       L +           +L     + 
Sbjct: 195 AQLTLDDVQQAVLNVARYDIDTLRQAVLEGDPARCARLLEGLHGEGAAPPLVLWALANET 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L  +   ++         + K E+     ++ +L  +L       +R     + H   
Sbjct: 255 RSLALLRAGQDAG--QPLAALFKAERVFDERRKQLLTRALARLGGGRLRAA---LMHAAR 309

Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344
           + R  K L    ++   L +A   C+
Sbjct: 310 IDRMIKGLADGDVWDEFLQLALRLCR 335


>gi|186477334|ref|YP_001858804.1| DNA polymerase III subunit delta [Burkholderia phymatum STM815]
 gi|184193793|gb|ACC71758.1| DNA polymerase III, delta subunit [Burkholderia phymatum STM815]
          Length = 375

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 116/342 (33%), Gaps = 31/342 (9%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           ++I YG +  L  E    I    +    T    F++          + S+      S SL
Sbjct: 19  LYIVYGDEHLLAQEACDRIRAAARAGGFTDRTVFTVER------GFDWSSLLGASQSMSL 72

Query: 80  FSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           F  ++++   I +    K+  D L+ +      + + ++    +               +
Sbjct: 73  FGDRQLVELRIPSGKPGKEGADALKTLAAAANPDVLTLVTLPRLDAATQKAAWFTALADA 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKL 191
            +A+   P  +  L   I + L    + ++       A Q +   + G+ +A+  E+QKL
Sbjct: 133 GVALKIDPVERAQLPGWISQRLASQNQRVAPGEDGKRALQFIAERVEGNLLAAHQEIQKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                   ++T + V D + +     + ++  A + G +     + D        +  +L
Sbjct: 193 GL-LYPSGVLTFEQVHDAVLNVARYDVFKLNEAMLAGDVGRLSRMIDGLKGEGEAAVLVL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              +++ + L +I    +        ++++    +   +  ++  +L    +  +   L 
Sbjct: 252 WAVVEEIRTLLRIKRGVDA-GKPLAMLLRENR--VWGPRERLVGPALSRVTEAALERALS 308

Query: 312 ---KIDHRIHLA-------RKKKYLEKNIIFQTILYIAQTAC 343
              ++D ++          R+             L +   A 
Sbjct: 309 LAARLDRQVKGLSGGTPGDRRNDPPPDPWAGLFELALTVAAA 350


>gi|227509439|ref|ZP_03939488.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191151|gb|EEI71218.1| DNA polymerase III subunit delta [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 342

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++ HK              V++  G        L +Q K+  +    D    + +  
Sbjct: 7   MTQLKQHKQDA-----------VYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51

Query: 61  LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110
            ++++   +   E   S   F ++++++I            S  +  +D   E +     
Sbjct: 52  YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111

Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           + I++I +   ++     + K  +K  + + I    +++  +   +++ +     +I ++
Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYTIDED 169

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A + ++    G   +  N+L KL  Y  +   IT   V  ++  +    + +++N+ ++ 
Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
               ++ +    +        +    +Q+F+LL ++ +I +    S   +    +  + P
Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +  +  +++R ++   +R+    +       +   
Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322


>gi|325570543|ref|ZP_08146269.1| DNA-directed DNA polymerase III delta subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156389|gb|EGC68569.1| DNA-directed DNA polymerase III delta subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 345

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 123/297 (41%), Gaps = 21/297 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           +++  GS+  L  ++   F +  S+   D    +   + +++K+       E  S   F 
Sbjct: 24  IYLVIGSEMFLQEQVRTAFLERFSVGKDD----LNFASFDMEKDPLDMVIQEAQSLPFFG 79

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
            ++++ +E    L+ EKK       LD     I   + + +I+I ++  ++ +   + K 
Sbjct: 80  DQRLLFVERPFFLTAEKKSNAPEHDLDDFLNYIKDPLESSVIVIFADVDKLDERKKITKQ 139

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   V+ ++   +    +   +++SL      +S+EA  + L         +  ELQK
Sbjct: 140 LKKAAVVIDVAPMKE--ADVRQYLQQSLANDGIEMSREAFDLFLRLTDLQLSKAMQELQK 197

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y      IT++ V  +I  T    + E+ +  ++G + +A+ L D  L     +  +
Sbjct: 198 LRLYAGNGNKITKEIVLQLIPKTLEHNVFELTSDVLKGNVSDALRLYDDLLLQGEETIKI 257

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
               + + +LL +  I+ +     +++        I P +  +  +  R + +  + 
Sbjct: 258 NAILISQVRLLLQAAILMKIG---YQQANIAETLGIHPYRVKLAMQQARGFGEKQLA 311


>gi|161831366|ref|YP_001596487.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 331]
 gi|161763233|gb|ABX78875.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 331]
          Length = 339

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 16/310 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      +++  G    L+ E  +  ++         F    L  +E   +  +     +
Sbjct: 13  NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCKLLFVETGFHWQSLTQSFD 69

Query: 76  STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + SL S K +I + N     ++     L + +     +  +II +N++       K  + 
Sbjct: 70  NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKA 129

Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              S   IS +P +   L+  IE+ L         E+  +L     G+ +A+   ++KL 
Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251
               +D  IT + +  ++ D     I ++  A + G     +  LA+ + A K     +L
Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310
               ++ +LL  + I  +      E +  + +      ++  L+ +L   N  ++ + L 
Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQLLQ 303

Query: 311 --HKIDHRIH 318
              +IDH + 
Sbjct: 304 QAKRIDHILK 313


>gi|317499482|ref|ZP_07957748.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893256|gb|EFV15472.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 249

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 8/245 (3%)

Query: 90  NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
                KK  D   E + +     +++   + + K + + K   K    +      D    
Sbjct: 3   ETGLGKKSDDTFIEGLKEASDTSVVLFIEDSVDKRSKIYKFLSKEGHAVCFESAGD--KE 60

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L   +   L    K +S    +  L   G D    +NEL+KL SY  E   IT + ++++
Sbjct: 61  LSRWLASLLKKEGKQMSSATMRSFLYRCGSDMYTLKNELEKLISYVGEREEITIRDLEEL 120

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
                   I  ++ A  + +    + L    +  K     +L   +++   L ++    +
Sbjct: 121 TSSQTTNQIFVMLEAIARKQREKVLTLYYDLIELKESPFGILALLVRQCNQLLQVK-DLD 179

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYL 326
           C   S   I ++ +       +  L++  ++++ + +R   E   K D  I   +    +
Sbjct: 180 CLGKSNGMIAKQMKVPAFVAGK--LKDQAKMFSMDTLRDMIEACAKTDESIKTGKISDRV 237

Query: 327 EKNII 331
              ++
Sbjct: 238 GVELL 242


>gi|296506455|ref|YP_003667689.1| hypothetical protein BMB171_P0073 [Bacillus thuringiensis BMB171]
 gi|296327042|gb|ADH09969.1| hypothetical protein BMB171_P0073 [Bacillus thuringiensis BMB171]
          Length = 331

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 98/254 (38%), Gaps = 10/254 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L+ + +    +  +    +  ++V  +  E  + I T  NE    S F 
Sbjct: 2   PTYVLYGKETYLLEDKVKGIIQEFTNNTKEDLNVVEFDMEE--ETIQTAINEAEEYSFFG 59

Query: 82  KKKIILIENL-----STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
            KKI++  N         K+V   +      + K + + ++I+  N+ K +   + + E 
Sbjct: 60  GKKIVITRNANFLTSDNNKEVNHDVNYILSFLEKKMEDSVLILIVNQEKLDQRKKVVKEL 119

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               +       N+      I +        IS E+ Q L+ ++G +    +NE+ KL +
Sbjct: 120 KKKAIIFEAKTLNQAETATWILKYANNKNIQISNESVQELIVSVGCNLRCLKNEVDKLYA 179

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y      IT   +  +   +    I  +    +      AI L +  +  K     +L  
Sbjct: 180 YSNGGKEITMDAIAAVTVKSLEQSIFNLSEYLLSQDTNKAIELFNELILKKHNPIQILAT 239

Query: 254 FLQKFQLLEKIHII 267
            + KF +L KI ++
Sbjct: 240 LIYKFDMLFKIKVL 253


>gi|229086894|ref|ZP_04219053.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-44]
 gi|228696404|gb|EEL49230.1| DNA polymerase III, delta subunit [Bacillus cereus Rock3-44]
          Length = 336

 Score = 90.8 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 123/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLIYGTEAYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEEVIEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           + KI+LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ECKILLIKSPLFLTSQKEKLEQNIKILEEYIAEPSPFTIVVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   +          I + A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANEMQVQDVRKWVVARAEEVHVHIEEMAINLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEVTTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLNQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|156973529|ref|YP_001444436.1| DNA polymerase III subunit delta [Vibrio harveyi ATCC BAA-1116]
 gi|156525123|gb|ABU70209.1| hypothetical protein VIBHAR_01220 [Vibrio harveyi ATCC BAA-1116]
          Length = 339

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 114/306 (37%), Gaps = 19/306 (6%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           V++ +G++  LI E    I    +         F++      +   + +  ++   + +L
Sbjct: 19  VYLIFGNEPLLIQESRQAIQNMARQQGFEERHRFAV------DASLDWNQVYDCFQALNL 72

Query: 80  FSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           FS +++I +E         +   L  +      + ++++  +++ K     K   K  S 
Sbjct: 73  FSSRQLIELELPEAGANAAISKELVNLCEMLHDDIMLVVVGSKLTKAQENAKWF-KALSA 131

Query: 138 LA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +SC   +   L   ++           +++ Q+L     G+  A    L+KL+   
Sbjct: 132 KGDWVSCLTPDLQRLPMFVQARCRALGLKADQQSLQMLAQWHEGNLFALSQSLEKLAL-L 190

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D  +T   +++ +   +       I+A + GK   A  +     A  + +  L+    
Sbjct: 191 YPDGELTVVRLEEALSRHNHFTTFHWIDALLAGKANRAQRILRQLEAEGIETIILIRSVQ 250

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++F  L  +H  ++   +   ++ +K    +   KR     +L   + + +   L  + H
Sbjct: 251 KEFNQLLNMH--RDLIQMGMSQVFEKHR--VWQNKRPFYNAALTRLSASRICALLSLLAH 306

Query: 316 RIHLAR 321
               A+
Sbjct: 307 AEIKAK 312


>gi|29653896|ref|NP_819588.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 493]
 gi|154707041|ref|YP_001424852.1| DNA polymerase III, delta subunit [Coxiella burnetii Dugway
           5J108-111]
 gi|29541159|gb|AAO90102.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 493]
 gi|154356327|gb|ABS77789.1| DNA polymerase III, delta subunit [Coxiella burnetii Dugway
           5J108-111]
          Length = 339

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 119/310 (38%), Gaps = 16/310 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      +++  G    L+ E  +  ++         F    L  +E   +  +     +
Sbjct: 13  NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69

Query: 76  STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + SL S K +I + N     ++     L + +     +  +II +N++       K  + 
Sbjct: 70  NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKA 129

Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              S   IS +P +   L+  IE+ L         E+  +L     G+ +A+   ++KL 
Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251
               +D  IT + +  ++ D     I ++  A + G     +  LA+ + A K     +L
Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310
               ++ +LL  + I  +      E +  + +      ++  L+ +L   N  ++ + L 
Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQLLQ 303

Query: 311 --HKIDHRIH 318
              +IDH + 
Sbjct: 304 QAKRIDHILK 313


>gi|262172036|ref|ZP_06039714.1| DNA polymerase III delta subunit [Vibrio mimicus MB-451]
 gi|261893112|gb|EEY39098.1| DNA polymerase III delta subunit [Vibrio mimicus MB-451]
          Length = 342

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 108/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E     +K         F      + +   + S+ ++   S SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQSLSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + I+++   ++ K        +  +   
Sbjct: 74  SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K     +    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQEGQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSKALFRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|269926062|ref|YP_003322685.1| DNA polymerase III, delta subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789722|gb|ACZ41863.1| DNA polymerase III, delta subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 331

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 112/350 (32%), Gaps = 47/350 (13%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V    G+D   + E +      +         +V L A  +   I    +  N+  LF  
Sbjct: 2   VVTICGNDHTKLNERLRAILSELEEDTD----VVELEATGLS--IRDLRDYCNTMPLFGG 55

Query: 83  KKIILIEN----------------------LSTEKKVLDCLEEIIIKNICNHIIIIK--- 117
           K++++++                        ++  +++  LE+ + +     +++     
Sbjct: 56  KRVVIVKGISSLSSSDASSSTDQEYSERKTRTSSSQLVKDLEDYLPEVPETTLLVFFDRN 115

Query: 118 -SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
                     LRK +     +L        +  L   I ++       I  E+ +IL   
Sbjct: 116 PIGTSGIGRVLRKYSSFEEYLLP------EQAELPLYIRKAFESDGYKIDSESAEILAQA 169

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           +  D    ++E+ KL  YC + + I  + +  ++     + + +I +A        A+  
Sbjct: 170 VSNDVSRLQSEMDKLKMYCKDKLRIDPEDIYLLVDMPPDVAVWDITDAIYSKNAGKAVQS 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               L   +    ++     + + L      ++  ++  ++     +      ++  L  
Sbjct: 230 FRALLEKGVAPQQIIGAISSQIRNLVIADSCRDKGSLYLQQA-TGMKP--FVARK--LST 284

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +L  +     ++ L  +       +      K  +   +    Q AC   
Sbjct: 285 ALSTFKPGQPKKLLEMLLQVDLSYKT----GKAELDSALELFIQQACARR 330


>gi|302039504|ref|YP_003799826.1| putative DNA polymerase III subunit delta [Candidatus Nitrospira
           defluvii]
 gi|300607568|emb|CBK43901.1| putative DNA polymerase III, delta subunit [Candidatus Nitrospira
           defluvii]
          Length = 364

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 81/244 (33%), Gaps = 9/244 (3%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL---IENLSTE 94
                  +       F+  + +  +    +       +   +F+++++++   +E L   
Sbjct: 33  AALRAAALGPAADTGFNCDIFHGDDCS--VEDVLACASEIPVFAERRVVVYKSVEKLPAR 90

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
           +   + L            +I+ + ++       +        + ++C P     L   I
Sbjct: 91  EG--EKLLSYFAAPNDTTTLIVVAAKLDGRMKWTQAL--TKGGVTVNCAPLRDAQLSAWI 146

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
            +        I +EA Q+L         A + EL+KL++Y   D       V+ +     
Sbjct: 147 RQEAAALGVRIHEEATQLLKEVGSESLYAVKRELEKLAAYVPPDRTAQLADVEALRGTES 206

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274
              + +++NA        A+ +    L +      +L   + +++ L K+    +     
Sbjct: 207 GASVFDLMNAIGAHDHGRALRILARNLENGEAPLRILGALVWQYRRLWKMKEQLKSGGRE 266

Query: 275 FEKI 278
            E  
Sbjct: 267 GEAA 270


>gi|238795404|ref|ZP_04638919.1| DNA polymerase III subunit delta [Yersinia mollaretii ATCC 43969]
 gi|238720523|gb|EEQ12324.1| DNA polymerase III subunit delta [Yersinia mollaretii ATCC 43969]
          Length = 304

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 100/266 (37%), Gaps = 10/266 (3%)

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
            + ++   + SLF+ ++ +L+   +      + + L ++      + ++I+++N++ K  
Sbjct: 22  DSIFSLCQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSGLLHPDILLILRANKLTKAQ 81

Query: 126 TLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
                 +    + + +SC    +  L   +          +   A Q+L     G+ +A 
Sbjct: 82  ENSPWFKALSKNGVFVSCQTPEQAQLPRWVSTRAKSLSLDVDDAAIQLLCYCYEGNLLAL 141

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              L++LS     D  +T   V+  + D         ++A + GK   A  +        
Sbjct: 142 SQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQED 200

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                LL    ++   L  +    +   +    +  + +  +   +R ++ ++L+  +  
Sbjct: 201 SEPIILLRTLQRELLQLLTLKRRMD--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMQ 256

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNI 330
            + + +H +       R K+   ++I
Sbjct: 257 QLHQAVHLLTQ--MEIRLKQDYGQSI 280


>gi|229512953|ref|ZP_04402419.1| DNA polymerase III delta subunit [Vibrio cholerae TMA 21]
 gi|229349846|gb|EEO14800.1| DNA polymerase III delta subunit [Vibrio cholerae TMA 21]
          Length = 342

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTARELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|254496564|ref|ZP_05109432.1| DNA polymerase III, delta subunit [Legionella drancourtii LLAP12]
 gi|254354188|gb|EET12855.1| DNA polymerase III, delta subunit [Legionella drancourtii LLAP12]
          Length = 348

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 107/289 (37%), Gaps = 10/289 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G D  L+ E +   K  I   +     ++ +   E   + +    E NS SLFS
Sbjct: 18  PLYILVGQDNYLLDESLATIKSAIKKDHDCDERVLTVQTTE---DWNNLREEANSYSLFS 74

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            +    I  +  S +      L E +        I+I++  +       +        + 
Sbjct: 75  DRVFLNIFFDKKSIDAAGKKILTEYLGSINSRCFIVIRAPNVPAKQL--QWLTAHEHAVV 132

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
              YP N   + + I   L     +  ++   ++     G+ +A    ++K++  C  D 
Sbjct: 133 SVAYPLNATAMKNWIAIELRKNALNYDQQVPDVIHQYTQGNMLACAQVIEKIALSCAPDS 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+ Q  ++ + D     + E+I+A +QG+   AI +     + K     +L       Q
Sbjct: 193 KISIQQAQEHLSDQCDHNLFELIDACLQGQGDKAIQILRHAASDKTEPTLVLWMLT---Q 249

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +  I  +        +      +  I P +  + Q S +  N N++++
Sbjct: 250 EVRTILQLTNLLQQQIDIKNASAQLKIWPQRIVLYQASCKRLNNNVLQQ 298


>gi|254509290|ref|ZP_05121382.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus 16]
 gi|219547778|gb|EED24811.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus 16]
          Length = 337

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 114/321 (35%), Gaps = 14/321 (4%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I + + +++  K L   H  ++ +G++  L+ E     +K         F      A++ 
Sbjct: 3   IFADRLLEQVNKQL---HPTYLLFGNEPLLLQESRQAIQKAA---LSQGFEERHRFAIDS 56

Query: 64  QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
             + +  ++   + SLFS ++II +E         +   L  +      + ++++   ++
Sbjct: 57  SFDWNLVYDCCQAMSLFSARQIIELELPESGVNAAIAKELLALADMLHQDVLLVVIGTKL 116

Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K     K  +   T+   ++C   +   L   ++            EA Q+L     G+
Sbjct: 117 TKAQENAKWFKALSTNGFWVNCLTPDVQRLPQFVQARCRALNLKPDPEATQMLAHWHEGN 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A    L+KL      D  +    +++ +   +       I+A + GK   A  +    
Sbjct: 177 LFALTQSLEKLVL-LYPDGQLNLIRLEESLSRHNHFTAFHWIDALLAGKANRAQRIMRQL 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A  +    L     ++ Q L  +  + +       ++ +     I   KR +   +L  
Sbjct: 236 EAEGVEMVILARTIQKELQQLLAMLQMMQTE--PIGRVFESYR--IWQSKRPLYSAALTR 291

Query: 301 WNKNLVRETLHKIDHRIHLAR 321
            +   V+  L  +     L +
Sbjct: 292 LSIANVKTLLQLLAKIEILTK 312


>gi|116333996|ref|YP_795523.1| DNA polymerase III subunit delta [Lactobacillus brevis ATCC 367]
 gi|116099343|gb|ABJ64492.1| DNA polymerase III, delta subunit [Lactobacillus brevis ATCC 367]
          Length = 342

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 100/250 (40%), Gaps = 16/250 (6%)

Query: 71  WNEINSTSLFSKKKIILIEN-----LSTEKKVL----DCLEEIIIKNICNHIIIIKSN-- 119
            ++  +   F +++++ I+N       T+K+ +    D L++ +   + + +++  +   
Sbjct: 64  LDDAMAAPFFGERRVVCIDNPQFLTGETKKQKVEHDIDSLQKYLESPMPSTVLVFFAPYD 123

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           ++     + K  +K  +++ I+ + +    +   + + L     ++   A   L+     
Sbjct: 124 KLDARKKVTKQLKKVATIVEINQFSE--RDVRQFVTDQLKQDGYTLEPAALNDLIQRTDA 181

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D     +EL KL  Y L +  IT+  +  ++  T    + +++N  +      A+ L   
Sbjct: 182 DLTLIMSELPKLELYTLPEKTITQAAISGLVTQTLTQNVFDLVNRVLAKNTAGAVTLYRE 241

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
            L +K     +      +F+LL +  ++      S  K+    +  + P +  +  ++ R
Sbjct: 242 LLQAKEEPLKINAILQGQFRLLIQTKVLA-KQGYSQGKLASILK--VHPYRIKLALQTHR 298

Query: 300 IWNKNLVRET 309
            +    +   
Sbjct: 299 RFQLTDLNRA 308


>gi|57233595|ref|YP_180802.1| DNA polymerase III delta subunit-related protein [Dehalococcoides
           ethenogenes 195]
 gi|57224043|gb|AAW39100.1| DNA polymerase III delta subunit-related protein [Dehalococcoides
           ethenogenes 195]
          Length = 399

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 123/345 (35%), Gaps = 40/345 (11%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           L + ++IF GSD   + E + Q K  +        +  +L    +    +   N + +  
Sbjct: 55  LLNLLYIFTGSDDFSLKERLKQIKLALGDESLSSANTTMLEGKNLTA--AELQNYVQTIP 112

Query: 79  LFSKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIII------K 117
             +  +++++  L                 +K   D     +       + ++      K
Sbjct: 113 FLAPARLVMVNGLLERFEGSKGKAAAKDKADKNSPDEFARALSNLPPTTLAVLLDYTTAK 172

Query: 118 SNEIK--------KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
             + +         +N L K+      V   +       +L   + +        +S  A
Sbjct: 173 DGDYREKEKVSALASNPLFKLVSPGAEVKHFAPLS--AQNLPGWVMQRAKQSSIQMSVPA 230

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            ++L   +G D  A  +E++KL  Y      + E  V++++  +  + I  +++A +  K
Sbjct: 231 ARLLARFVGADLWALSSEIEKLGLYAQG-RAVEEADVENMVGYSQEVNIFGLVDAVLDRK 289

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           + +A      F A       LL   +++ +L+ + +   +   +   +I +    +   +
Sbjct: 290 VKDAQQSLAAFTAGGGSPGFLLFMLVRQLRLMVR-YTALKKRGLKEAEIFKAMGGSEYAL 348

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331
           ++   Q + +  N + ++    K+      I   R +  L   ++
Sbjct: 349 RKTASQAACQ--NMDSLKAIYSKLLETDFNIKTGRFEPELAMGLL 391


>gi|229051335|ref|ZP_04194849.1| hypothetical protein bcere0027_52680 [Bacillus cereus AH676]
 gi|229125360|ref|ZP_04254449.1| hypothetical protein bcere0016_55950 [Bacillus cereus 95/8201]
 gi|228658089|gb|EEL13840.1| hypothetical protein bcere0016_55950 [Bacillus cereus 95/8201]
 gi|228722028|gb|EEL73459.1| hypothetical protein bcere0027_52680 [Bacillus cereus AH676]
          Length = 331

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 10/254 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG +  L+ + +    +  +    +  ++V  +  E  + I T  NE    S F 
Sbjct: 2   PTYVLYGKETYLLEDKVKGIIQEFTNNTKEDLNVVEFDMEE--ETIQTAINEAEEYSFFG 59

Query: 82  KKKIILIENL-----STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
            KKI++  N         K+V   +      + K + + ++I+  N+ K +   + + E 
Sbjct: 60  GKKIVITRNANFLTSDNNKEVNHDVNYILSFLEKKMKDSVLILIVNQEKLDQRKKVVKEL 119

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               +       N+      I          IS E+ Q L+ ++G D    +NE+ KL +
Sbjct: 120 KKKAIIFEAKTLNQAETATWILNYANNKNIQISNESVQELIVSVGCDLRCLKNEVDKLYA 179

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y      IT   +  +   +    I  +   ++      AI L +  +  K     +L  
Sbjct: 180 YSNGGKEITMDAIAAVTVKSLEQSIFNLSEYSLSQDTNKAIGLFNELILKKHNPIQILAT 239

Query: 254 FLQKFQLLEKIHII 267
            + KF +L KI ++
Sbjct: 240 LIYKFDMLFKIKVL 253


>gi|30249124|ref|NP_841194.1| putative DNA polymerase III (delta subunit) protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138741|emb|CAD85048.1| putative DNA polymerase III (delta subunit) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 356

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 118/302 (39%), Gaps = 12/302 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +  L+ E ++  +  +    +   +++  +      +    +     +SLFS
Sbjct: 18  PLYVVLGDELLLVMEAVDGIRAYVRGQGYTERTILTADQRF---DWMNLFQWGRQSSLFS 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
           +++++   I +    ++    +E    +   + + ++   EI K     K  +       
Sbjct: 75  ERRMLDLRIPSGKPGREGGVAIETFCRELPRDTVTVVTLPEIDKQGRASKWFKALEQAGQ 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I   P  +  L   I++ L    + I ++  Q     + G+ +A+  E+ KL       
Sbjct: 135 VIEVKPVGRDRLAHWIKQRLDRQNQMIDQDTLQFFAGKVEGNLLAAHQEIHKLGL-LYPP 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T + VK+ I D     + ++    +   +     + +      +    +L    ++ 
Sbjct: 194 GRLTFEQVKNAILDVTRFDVLQLPETMLTADMVRYRHILEGLQGEGVAPPLILAILSEQI 253

Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           +LL KIH++K  S  ++ E+ +      I P ++ ++  +++     L+ + L  +   +
Sbjct: 254 RLLIKIHLLKNSSRGMTIEQAMTALR--IWPARQKLMMGAIQRIRYPLLVQAL--LQAAV 309

Query: 318 HL 319
             
Sbjct: 310 ID 311


>gi|258625421|ref|ZP_05720315.1| DNA polymerase III, delta subunit [Vibrio mimicus VM603]
 gi|258582332|gb|EEW07187.1| DNA polymerase III, delta subunit [Vibrio mimicus VM603]
          Length = 342

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E     +K         F      + +   + S+ ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKTAIEKAAQAQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + I+++   ++ K        +  +   
Sbjct: 74  SSRQLIEIEIPESGINAQAAKELSSLAGQLHQDIILLVIGPKLTKAQENAAWLKTLSQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNFFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NIGSLFDRYR--VWQNRRPLYSAALQRLPSTALFRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|212212951|ref|YP_002303887.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuG_Q212]
 gi|212011361|gb|ACJ18742.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuG_Q212]
          Length = 339

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 120/310 (38%), Gaps = 16/310 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      +++  G    L+ E  +  ++         F    L  +E   +  +     +
Sbjct: 13  NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69

Query: 76  STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + SL S K +I + N     ++     L + +     +  +II +N++       K  + 
Sbjct: 70  NFSLLSDKTLIELRNPKAKFDESGTQALLQYLDNPPEDKRLIIITNKLTAAQQKTKWYKA 129

Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              S   IS +P +   L+  IE+ L         E+  +L     G+ +A+   ++KL 
Sbjct: 130 IDRSGAVISLWPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEKLR 189

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHALL 251
               +D  IT + +  ++ D     I ++  A + G     +  LA+ + A K     +L
Sbjct: 190 L-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLLIL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL- 310
               ++ +LL  + I  +      E +  + +     +++  L+ +L   N  ++ + L 
Sbjct: 249 WAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----IRKQPLRTALMRLNTTIIAQLLQ 303

Query: 311 --HKIDHRIH 318
              +IDH + 
Sbjct: 304 QAKRIDHILK 313


>gi|297581333|ref|ZP_06943257.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534649|gb|EFH73486.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 342

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LIQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|311069157|ref|YP_003974080.1| DNA polymerase III subunit delta [Bacillus atrophaeus 1942]
 gi|310869674|gb|ADP33149.1| DNA polymerase III subunit delta [Bacillus atrophaeus 1942]
          Length = 347

 Score = 90.0 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 16/304 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSL 79
           H V+  YG +  L+ E I + ++ +       F+L V +   ++++          +   
Sbjct: 15  HPVYCLYGKETYLLQETIGRIRQAVIDQETKDFNLSVFD---LEEDPLDLAVADAETFPF 71

Query: 80  FSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
             ++++++++N   L+ EKK       +  LE  I +     + ++ +   K +   +  
Sbjct: 72  MGERRLVIVKNPYFLTGEKKKEKVEHNVSALEAYIQEPAPYTVFVLLAPYEKLDERKKLT 131

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                    +     N     D          K I +EA + L+  + G   +   E+QK
Sbjct: 132 KALKKKAFMVEAKELNAKETTDFTINLAKTEHKIIREEAAEHLVLLVNGHLSSIYQEIQK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L +Y  E   I    VK ++  +    I E+IN  +  K   ++ +    L        +
Sbjct: 192 LCTYIGEREEIMLDDVKALVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNEEPIKI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +F+L+ +     E      ++I    +  + P +  +  +  R++++  +R  +
Sbjct: 252 MALISNQFRLILQTKYFAE-QGYGQKQIAANLK--VHPFRVKLAMDQARLFSEAELRHII 308

Query: 311 HKID 314
             + 
Sbjct: 309 ESLA 312


>gi|225175088|ref|ZP_03729084.1| DNA polymerase III, delta subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169264|gb|EEG78062.1| DNA polymerase III, delta subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 345

 Score = 90.0 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 108/309 (34%), Gaps = 14/309 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V+IF GS+  L+ + +      +            +   +    +    + +++ SLF
Sbjct: 23  HPVYIFTGSEDFLMQDAVAAVYGLMEAKAAVSTDYSRIEGPQYA--LGDVLDMVDTVSLF 80

Query: 81  SKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
              +++ + +       +  K+ L  L+  + +      ++  + +  K     K  E  
Sbjct: 81  GDSRMVTVADAPYFAKGAGSKEDLAKLQAYLARRDAASCVVFCARDFMKTTKAAK--ELA 138

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            S       P     L D + + +    K+ S     +L+  +G D     NE+ KL++Y
Sbjct: 139 ASGGVFVFEPLKGAALADWLRKRVASVGKTASSHTLNLLVERVGRDLRRLANEVDKLATY 198

Query: 195 CLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
             +D   + E  V      +    I  + +A + G+   A+ L    L +  P   +L  
Sbjct: 199 LGDDRQELDESTVMLATSRSIQGDIFALTDAVVYGRAPKALFLLKDLLGAGEPPLRILAM 258

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            +++F+LL   H +      + E         I P     L       +   +   +  +
Sbjct: 259 LVRQFRLLGSAHELLNNGCRADEL---SARLGIHPYAAEKLVAQAYKASDAQLGRAVELL 315

Query: 314 DHRIHLARK 322
                  ++
Sbjct: 316 LQTDLDIKR 324


>gi|160933055|ref|ZP_02080444.1| hypothetical protein CLOLEP_01897 [Clostridium leptum DSM 753]
 gi|156868129|gb|EDO61501.1| hypothetical protein CLOLEP_01897 [Clostridium leptum DSM 753]
          Length = 349

 Score = 90.0 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 131/352 (37%), Gaps = 23/352 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA ++  +  ++  +  F+   ++  YG +K LI          +    +  F+    + 
Sbjct: 1   MAQLKESELKKQIKEKAFV--PLYFLYGEEKYLISHYTEAIVNKVLGKSYSDFNFQAFDG 58

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENL---STEKKVLDCLEEIIIKNICNHIIIIK 117
              + +I    +   +  LF+++K +L+++L   +     L  L +++ +     ++II 
Sbjct: 59  G--KASIDEIADAAQALPLFAERKCVLVKDLNVEALNAGELAKLYQLLEELSETTVLIIS 116

Query: 118 SNEI----KKNNTLRKI---AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
            + +    K++   +K    AEK  +V+ +      +I L   + +        +++   
Sbjct: 117 QSTLEIDAKRSAKWKKFIAAAEKNGTVVLLE--KRGEIALEKQLVQWAEKRGCGLTQINA 174

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             ++   G D +   +EL+KL +Y +    IT   +  ++       +  + NA + G  
Sbjct: 175 GKIIQLCGDDLLTLSSELEKLCAYAVG-REITMDDIDLLVTKNLETTVFVLGNALMAGNY 233

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A    D     K    A+L      +  L +     E    +         +    + 
Sbjct: 234 DKAYQQLDLLFYQKEEPVAVLAVLSSNYVNLYRAKTALESGEKTSVLSKDFDYRGRDFLI 293

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK-----KKYLEKNIIFQTILY 337
           RN  +   +  + + +R++L  +       +      +  LE+ I    +L 
Sbjct: 294 RNA-ERDCKRASISQLRKSLFLLAQADLALKSGRSEPRTVLEELIGKMMLLA 344


>gi|327402529|ref|YP_004343367.1| DNA polymerase III subunit delta [Fluviicola taffensis DSM 16823]
 gi|327318037|gb|AEA42529.1| DNA polymerase III, delta subunit [Fluviicola taffensis DSM 16823]
          Length = 332

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 105/271 (38%), Gaps = 8/271 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +   I  L +   ++        F+L +    +I  +  T  +E  S     
Sbjct: 17  PLYVLHGEEPYFIDVLSDALIEHAVDESEKDFNLAIYYGRDI--DALTLMSEARSFPFMG 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +K++++      K + + LE+++   + ++I++I  K   +       K  E     + 
Sbjct: 75  TRKVVVVREAQDLKDIYE-LEKLLPNLVESNILVICHKYKALDGKRKFTK--ELVKYGVN 131

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  + +L + I   +      ++ +A  +L   LG D     NEL KL+    +  
Sbjct: 132 FKSEKVKEYNLTEWISTYVRTEGYEVTSKAAALLGEFLGNDLSRIVNELDKLAIVLEKGT 191

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I++ H+++ I  +    + E++NA        A  +AD+F       H+++      F+
Sbjct: 192 KISDVHIEENIGISKDYNVFELVNAIAIRDTLKAFQIADYF-EKNPKDHSIIVVIPSVFK 250

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
           L   +  +      + E I      +    K
Sbjct: 251 LFTNMMRVHFAPTKTPEAIASSVGLHPFVAK 281


>gi|312905169|ref|ZP_07764290.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0635]
 gi|310631559|gb|EFQ14842.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0635]
          Length = 342

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    I ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNIFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|229525564|ref|ZP_04414969.1| DNA polymerase III delta subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229339145|gb|EEO04162.1| DNA polymerase III delta subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 342

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + S  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWSAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWFKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LIQLLKWQQERQRLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|153207817|ref|ZP_01946417.1| DNA polymerase III, delta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165919081|ref|ZP_02219167.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 334]
 gi|212218822|ref|YP_002305609.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuK_Q154]
 gi|120576369|gb|EAX32993.1| DNA polymerase III, delta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917215|gb|EDR35819.1| DNA polymerase III, delta subunit [Coxiella burnetii RSA 334]
 gi|212013084|gb|ACJ20464.1| DNA polymerase III, delta subunit [Coxiella burnetii CbuK_Q154]
          Length = 339

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 123/312 (39%), Gaps = 20/312 (6%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      +++  G    L+ E  +  ++         F    L  +E   +  +     +
Sbjct: 13  NRQALLPLYLISGDVPLLVQETRDTIREAARQKG---FHQCELLFVETGFHWQSLTQSFD 69

Query: 76  STSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKI 130
           + SL S K +I + N     ++     L + +     +  +II +N++          K+
Sbjct: 70  NFSLLSDKTLIELRNPKAKFDESGTQALLQYLNNPPEDKRLIIITNKLTAAQQKTKWYKV 129

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++  +V+++  +P +   L+  IE+ L         E+  +L     G+ +A+   ++K
Sbjct: 130 IDRSGAVISL--WPLSGQSLLAWIEQRLKKAGLEADNESISLLAELTEGNLLATHQAIEK 187

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM-LADFFLASKMPSHA 249
           L     +D  IT + +  ++ D     I ++  A + G     +  LA+ + A K     
Sbjct: 188 LRL-LHQDESITPKAIIGVVNDNARFTIFDLTQAALMGAKSRVVRILANLYFADKEAGLL 246

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ +LL  + I  +      E +  + +      ++  L+ +L   N  ++ + 
Sbjct: 247 ILWAITRELRLLYPLAIDYQRGKPLTELLASQWQ-----TRKQPLRTALMRLNTTIIAQL 301

Query: 310 L---HKIDHRIH 318
           L    +IDH + 
Sbjct: 302 LQQAKRIDHILK 313


>gi|253681578|ref|ZP_04862375.1| DNA polymerase III, delta subunit [Clostridium botulinum D str.
           1873]
 gi|253561290|gb|EES90742.1| DNA polymerase III, delta subunit [Clostridium botulinum D str.
           1873]
          Length = 340

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 133/320 (41%), Gaps = 18/320 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++F GSD+  I   I++    +        +   L+ + +  ++ +  N   +  L S+K
Sbjct: 20  YVFCGSDEQSIRSNIDKIITKVVNKEFLELNYAQLDGMVV--DMESIINACETLPLMSEK 77

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132
           ++++I   +        + +KV + L++ I     + ++I   I  N+ +K ++  K  +
Sbjct: 78  RVVVIYRANFLRDKVDKSAEKVFNALKKYIKDLPEDCVLIMYYIFENDREKESSKLKKID 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  S      + L   + E      K+I++    +    +  +     NE++KL 
Sbjct: 138 KDATVVKFSKLK--GMALQKRVAEIFKRKNKNITRADLALFCNTVENNMDIIENEVEKLC 195

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y +    IT + + ++I   +   I  +++   Q K  N++ + +  +        +L 
Sbjct: 196 CYTIGRD-ITTKDISNVIIGKNDNDIFNLVDFVSQKKPQNSLDILNELVFKGESVTGILR 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311
              ++F+L+  I +  E   ++ ++I ++   +    ++ +LQ +   I     + +   
Sbjct: 255 MIQRQFKLIFDIKLSIE-KGMNKDEISKELRLHPFICEKMMLQSKKFSISQLEKIFKLCI 313

Query: 312 KIDHRIHLARKKKYLEKNII 331
             +  +  +      E  ++
Sbjct: 314 DTEKTLKSSSVNPKTELELL 333


>gi|81299216|ref|YP_399424.1| DNA polymerase III subunit delta [Synechococcus elongatus PCC 7942]
 gi|81168097|gb|ABB56437.1| DNA polymerase III, delta subunit [Synechococcus elongatus PCC
           7942]
          Length = 332

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 105/292 (35%), Gaps = 16/292 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ F+G D+  + + + + +          F+   +   E    +    +   +    +
Sbjct: 2   PVYYFWGEDEFALRQAVEKLRDRSVDPMWASFNSERI-PPEQADGVLVALSLALTPPFGA 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKS-----NEIKKNNTLRKIAE 132
            ++ I +      ++  D +   + +         +++  S       +K    L+K+AE
Sbjct: 61  GQRFIWLPETPLAQQCSDAVYAELTRTLPQMPETTVLLFSSTGKPNGRLKSTKLLQKVAE 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                  I  +      L   + +        + +EA   L A +G       +EL+KL 
Sbjct: 121 -LKEFSPIPPWRGEA--LEQQVVQVAHEVGVRLDREAVACLAAAVGNQTRQLYSELEKLK 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +  +    +T + V+ ++  T    ++ +  A  QG    A+ L    +AS  P+  + 
Sbjct: 178 LFQGDRSEPVTARTVQALVSTTTQNSLQ-LAAAIRQGDCDRALSLVSDLIASNEPALRIS 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
              + +F++   + +++E      + I         P + + + + +R    
Sbjct: 237 ATLIGQFRMWLWVKLLQERGERDPQAIATAAGIG-NPKRVHFVLQEVRSLTS 287


>gi|315170256|gb|EFU14273.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1342]
          Length = 342

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKVT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAEAK 342


>gi|255972087|ref|ZP_05422673.1| DNA polymerase III subunit delta [Enterococcus faecalis T1]
 gi|255975154|ref|ZP_05425740.1| DNA polymerase III subunit delta [Enterococcus faecalis T2]
 gi|256763138|ref|ZP_05503718.1| DNA polymerase III subunit delta [Enterococcus faecalis T3]
 gi|255963105|gb|EET95581.1| DNA polymerase III subunit delta [Enterococcus faecalis T1]
 gi|255968026|gb|EET98648.1| DNA polymerase III subunit delta [Enterococcus faecalis T2]
 gi|256684389|gb|EEU24084.1| DNA polymerase III subunit delta [Enterococcus faecalis T3]
          Length = 336

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 11  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 68

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 69  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 126

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 127 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 186

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 187 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 246

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 247 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 303

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 304 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 336


>gi|229048029|ref|ZP_04193604.1| DNA polymerase III, delta subunit [Bacillus cereus AH676]
 gi|228723273|gb|EEL74643.1| DNA polymerase III, delta subunit [Bacillus cereus AH676]
          Length = 300

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 98/257 (38%), Gaps = 9/257 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   K +   +      
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I          I   A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT + V +++  +    +  +    ++  I  A+ + D     +     LL   
Sbjct: 193 VGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECS 271
           + +F+LL ++  +++  
Sbjct: 253 VSQFRLLYQVKELQQRG 269


>gi|227512164|ref|ZP_03942213.1| DNA polymerase III subunit delta [Lactobacillus buchneri ATCC
           11577]
 gi|227084558|gb|EEI19870.1| DNA polymerase III subunit delta [Lactobacillus buchneri ATCC
           11577]
          Length = 342

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++ HK              V++  G        L +Q K+  +    D    + +  
Sbjct: 7   MTQLKQHKQDA-----------VYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51

Query: 61  LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110
            ++++   +   E   S   F ++++++I            S  +  +D   E +     
Sbjct: 52  YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111

Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           + I++I +   ++     + K  +K  + + I    +++  +   +++ +     +I ++
Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYAIDED 169

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A + ++    G   +  N+L KL  Y  +   IT   V  ++  +    + +++N+ ++ 
Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
               ++ +    +        +    +Q+F+LL ++ +I +    S   +    +  + P
Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +  +  +++R ++   +R+    +       +   
Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322


>gi|228993066|ref|ZP_04152989.1| DNA polymerase III, delta subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228766714|gb|EEM15354.1| DNA polymerase III, delta subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 337

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 125/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++KI+L+++   L+++K+ L+     LEE + +     I++  +   K +   +      
Sbjct: 73  ERKILLVKSPLFLTSQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I   +      I + A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT   V +++  +    +  +    ++  I  A+++ D     +     LL   
Sbjct: 193 VGIGGEITTGLVAELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|315144862|gb|EFT88878.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2141]
          Length = 342

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 126/335 (37%), Gaps = 22/335 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN-EINSTSLF 80
            V++  G++  L         K +     D F+    +   I++   +    E  +   F
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFD---IEETPLSAAIAEAETIPFF 73

Query: 81  SKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
              +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK  
Sbjct: 74  GDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKV 131

Query: 132 EKF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQ
Sbjct: 132 TKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQ 191

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  
Sbjct: 192 KLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIK 251

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L    L + +L  +  I+          I    +  + P +  +  + +R +  + +   
Sbjct: 252 LNAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERL 308

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
             ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 309 YDELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|312869041|ref|ZP_07729218.1| DNA polymerase III, delta subunit [Lactobacillus oris PB013-T2-3]
 gi|311095467|gb|EFQ53734.1| DNA polymerase III, delta subunit [Lactobacillus oris PB013-T2-3]
          Length = 340

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 101/268 (37%), Gaps = 15/268 (5%)

Query: 71  WNEINSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
            ++  S   F ++++++I         +        L  + + +        ++  +   
Sbjct: 63  LDDAVSAPFFGERRLVIINKPYFLTNEKRGGKVDHDLSAVIKYLHHPEPTTTLVFLAPYE 122

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           K +   + + E     + +S  P ++      +E  L     +I   A ++L+     D 
Sbjct: 123 KLDGRKKLVKELKKVAVNVSAAPLDERSARQQVEGQLRQAGFTIDDAALELLVQRTNADY 182

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                 + KL     +D  IT   V+ ++  +    + +++ A ++     ++ L    L
Sbjct: 183 GLMVANVAKLEILAYQDKHITAPMVQALVPQSLDDNVFDLVTAVLRRDQPRSLELYQQLL 242

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           AS+     +    + +F+LL ++ ++     +S   I   +  N+ P +  +   ++R +
Sbjct: 243 ASQKQPLQINAVLVSQFRLLIQLKVLV-NHGLSQGSI--ASRLNVHPYRVKLGLRTVRQF 299

Query: 302 NKNLVRET---LHKIDHRIHLARKKKYL 326
           +   +      L KI+  +   ++   L
Sbjct: 300 SLERLANAYLGLVKIEQNLKTTQRDPEL 327


>gi|256956723|ref|ZP_05560894.1| DNA polymerase III subunit delta [Enterococcus faecalis DS5]
 gi|256961260|ref|ZP_05565431.1| DNA polymerase III subunit delta [Enterococcus faecalis Merz96]
 gi|293383545|ref|ZP_06629455.1| DNA polymerase III, delta subunit [Enterococcus faecalis R712]
 gi|293387342|ref|ZP_06631898.1| DNA polymerase III, delta subunit [Enterococcus faecalis S613]
 gi|300860264|ref|ZP_07106351.1| DNA polymerase III, delta subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|312899876|ref|ZP_07759194.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0470]
 gi|312906095|ref|ZP_07765107.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 512]
 gi|312909441|ref|ZP_07768296.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 516]
 gi|256947219|gb|EEU63851.1| DNA polymerase III subunit delta [Enterococcus faecalis DS5]
 gi|256951756|gb|EEU68388.1| DNA polymerase III subunit delta [Enterococcus faecalis Merz96]
 gi|291079057|gb|EFE16421.1| DNA polymerase III, delta subunit [Enterococcus faecalis R712]
 gi|291083240|gb|EFE20203.1| DNA polymerase III, delta subunit [Enterococcus faecalis S613]
 gi|300849303|gb|EFK77053.1| DNA polymerase III, delta subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|310627741|gb|EFQ11024.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 512]
 gi|311290114|gb|EFQ68670.1| DNA polymerase III, delta subunit [Enterococcus faecalis DAPTO 516]
 gi|311292872|gb|EFQ71428.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0470]
 gi|315032939|gb|EFT44871.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0017]
 gi|315035757|gb|EFT47689.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0027]
 gi|323481435|gb|ADX80874.1| DNA polymerase III, delta subunit [Enterococcus faecalis 62]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKVT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|256853806|ref|ZP_05559171.1| DNA polymerase III subunit delta [Enterococcus faecalis T8]
 gi|257421913|ref|ZP_05598903.1| DNA polymerase III subunit delta [Enterococcus faecalis X98]
 gi|307290500|ref|ZP_07570413.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0411]
 gi|256710749|gb|EEU25792.1| DNA polymerase III subunit delta [Enterococcus faecalis T8]
 gi|257163737|gb|EEU93697.1| DNA polymerase III subunit delta [Enterococcus faecalis X98]
 gi|306498447|gb|EFM67951.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0411]
 gi|315030175|gb|EFT42107.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4000]
 gi|315155379|gb|EFT99395.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0043]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAEAK 342


>gi|198282757|ref|YP_002219078.1| DNA polymerase III subunit delta [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666035|ref|YP_002424953.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247278|gb|ACH82871.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518248|gb|ACK78834.1| DNA polymerase III, delta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 330

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 96/251 (38%), Gaps = 18/251 (7%)

Query: 68  STFWNEINSTSLFSKKKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
               +E ++ SLF+ ++++L+   S +  K+    L+  +     + ++++     + + 
Sbjct: 61  DALRDERDAGSLFAAQRVLLLRLDSPKVPKEASAALQYWLASPPPDALLVLSGP--RPDA 118

Query: 126 TLRKIA-----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +++K A     E     L +  Y          +E+ L          A Q+L     G+
Sbjct: 119 SIQKTAWFKGIETHGHTLLL--YRPEGQDWPRWVEQRLRAAGMQADSAAVQLLTDLSAGN 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A    +Q+L         I    ++ ++ D+    I ++ +A ++G+  + + + D  
Sbjct: 177 LGACHQAIQRLQQ-VYPGQRIDAVAIRAVLADSSQFTIYDLADAVLRGETEHMLHMLDRL 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                     L    +  +LL ++        +  +   ++    I P ++  L+ + R 
Sbjct: 236 RNGDGEPALCLWVLHKDLRLLAELR----AGGVDVDAFFRQNR--IFPPRQGWLRTAARR 289

Query: 301 WNKNLVRETLH 311
             ++ ++  + 
Sbjct: 290 LTRSGLQAGIK 300


>gi|121729829|ref|ZP_01682262.1| DNA polymerase III, delta subunit [Vibrio cholerae V52]
 gi|147673713|ref|YP_001216427.1| DNA polymerase III subunit delta [Vibrio cholerae O395]
 gi|262168632|ref|ZP_06036327.1| DNA polymerase III delta subunit [Vibrio cholerae RC27]
 gi|121628433|gb|EAX60927.1| DNA polymerase III, delta subunit [Vibrio cholerae V52]
 gi|146315596|gb|ABQ20135.1| DNA polymerase III, delta subunit [Vibrio cholerae O395]
 gi|227012770|gb|ACP08980.1| DNA polymerase III, delta subunit [Vibrio cholerae O395]
 gi|262022750|gb|EEY41456.1| DNA polymerase III delta subunit [Vibrio cholerae RC27]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 109/304 (35%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  L+ E     +K         F      + +   + +  ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLLQEAKTAIEKTAQAQG---FLEKHRFSADAGLDWNAVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  ++ +   + ++++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGVNAQTAKELSALVGQLHQDILLLVIGPKLTKAQENAAWLKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++           EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFALGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D L+T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGLLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+      +   +  +    
Sbjct: 253 LTQLLKWQQERQQLG-NLGSLFDRYR--VWQNRRPLYSAALQRLPSRALLRLVGILTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|90414085|ref|ZP_01222068.1| DNA polymerase III subunit delta [Photobacterium profundum 3TCK]
 gi|90324880|gb|EAS41408.1| DNA polymerase III subunit delta [Photobacterium profundum 3TCK]
          Length = 343

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 109/296 (36%), Gaps = 10/296 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              F+ +G++  +  E  +Q K+              ++    Q + +   N   + SLF
Sbjct: 17  RQAFLLFGNEPLIKQECADQIKQCAQQAGFHERHAFTIDN---QLDWNEVLNCCQAMSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137
           S ++II +E             L EII     + +++++   + K     K  + F ++ 
Sbjct: 74  SAQQIIELEVPESGLNVNQAKALLEIISHLNDDILLLLQGPRLNKKQESAKWFKAFENIS 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L I C   +  HL   I+      +     E+  +L     G+ +A    LQKL+     
Sbjct: 134 LYIPCNTPDTRHLPRFIQARCQQLKLKPDHESVVLLAQWHEGNLLALAQSLQKLTL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +     ++++A + G+   +  +        + +  LL    ++
Sbjct: 193 DGELTVPRLQESLSRHNHYTPFQLLDAVLAGQAKRSQRVLRQLQGEGIEATILLRTLQRE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              L K+             I ++    I   +R +   +L       + + L ++
Sbjct: 253 LTQLYKMQ-EMGMKGTPLNNIFEQYR--IWQSRREVYIGALHRLPLTTLIQLLQRL 305


>gi|253574664|ref|ZP_04852004.1| DNA polymerase III, delta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845710|gb|EES73718.1| DNA polymerase III, delta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 115/306 (37%), Gaps = 19/306 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++K  I E ++  +  +       F++   +  E    I     E  +     
Sbjct: 19  PLYVCYGTEKYQIQEFVSLLQDQLVDPDQKDFAIATFDLAET--PIEVVVEEAETMPFLV 76

Query: 82  KKKIILIENL----STEKKV------LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRK 129
           ++K+I++ +     +  K+       ++ L   I     + +++  +   ++ +   + K
Sbjct: 77  ERKLIVVRDSTLLVAGGKEGGKIEHKVEALLTYIGNPAEHSVVVFVVNGEKLDERKKVVK 136

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +   +VL+    P     L+  + + +      I ++A + L+A  G        E+ 
Sbjct: 137 AIKAAGTVLSF--LPLGGGELVQWVVQEVEKRGCRIGRDAAEALIAASGVQMAVLAAEMD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y     +I    V+ ++  +    +  ++      ++  A+ +    L  +     
Sbjct: 195 KLCLYAGAGGMIDTAAVEQLVARSTEQNVFVMVEHIAAIRLEQALGIFYELLKQREEPIK 254

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +     ++F     +  +KE +  S+ +    ++ ++ P    +  +  R +    ++  
Sbjct: 255 IAALIARQF---RIMLQVKELARQSYSQQQIASQLSLHPYVVKLAGDQARKFETGRLKAI 311

Query: 310 LHKIDH 315
           L ++  
Sbjct: 312 LSELAE 317


>gi|85058779|ref|YP_454481.1| DNA polymerase III subunit delta [Sodalis glossinidius str.
           'morsitans']
 gi|84779299|dbj|BAE74076.1| DNA polymerase III delta subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 343

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 112/307 (36%), Gaps = 18/307 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ +G+D  L+ E  ++ +        D    V L+A     +    ++   + SLF
Sbjct: 18  RPCYLLFGNDPLLLQESQDRIRDRAQAQQFDERFSVTLDAAT---DWDAIFSLCQARSLF 74

Query: 81  SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++  ++++ +      + + + ++      + ++I++ +++ +        +    + 
Sbjct: 75  ASRQTLLLVLPDGGINAAMAEKMLQLASLLHDDVLLILRGSKLTRATENDSWFKALSQNA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + +SC    +  L   +       + ++   A Q+L     G+ +A    L++LS     
Sbjct: 135 VLVSCTTPEQAQLPRWVARRAASMKLTLDDAACQLLCYCYEGNLLALAQALERLSL-LYP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A +  K   A  +             LL    ++
Sbjct: 194 DGSLTLPRVEAAVNDAAHFTPFHWVDAALADKSKRAAHILRQLRLEATEPVILLRSIQRE 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKT--EKNIIPMKRNILQESLRIWNKNLVR---ETLHK 312
             LL  +         +    ++       +   +R++L +++       +R     + K
Sbjct: 254 VLLLLTL------KRQTAVAPLRTLFDRHKVWQNRRSLLTQAIGRLTLAQLRDTVALMTK 307

Query: 313 IDHRIHL 319
           I+  +  
Sbjct: 308 IELALKQ 314


>gi|227524106|ref|ZP_03954155.1| DNA polymerase III subunit delta [Lactobacillus hilgardii ATCC
           8290]
 gi|227088737|gb|EEI24049.1| DNA polymerase III subunit delta [Lactobacillus hilgardii ATCC
           8290]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 128/336 (38%), Gaps = 32/336 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++ HK              +++  G        L +Q K+  +    D    + +  
Sbjct: 7   MTQLKQHKQDA-----------IYLILGDQ----SYLSDQIKQAFTSLIPDEQRAMNIGV 51

Query: 61  LEIQKNISTFWNE-INSTSLFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNIC 110
            ++++   +   E   S   F ++++++I            S  +  +D   E +     
Sbjct: 52  YDMEETPVSSAVEDAISVPFFGEQRLVMINRPYFLTGLRVKSKVEHHVDDFLEYLKHPES 111

Query: 111 NHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           + I++I +   ++     + K  +K  + + I    +++  +   +++ +     +I ++
Sbjct: 112 STIMVIFAPYDKLDSRKKITKSLKKVATTVEIGKLRESE--IKSTVKQRIAAEGYAIDED 169

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A + ++    G   +  N+L KL  Y  +   IT   V  ++  +    + +++N+ ++ 
Sbjct: 170 ALERMMQLTAGQLTSMMNDLPKLFLYNKDGKQITLSSVNGLVSPSIEQSVFDLVNSVLKK 229

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
               ++ +    +        +    +Q+F+LL ++ +I +    S   +    +  + P
Sbjct: 230 NAKESMDIYRNLVLENEAPIGINAVLIQQFRLLLQV-MILQKHGYSQGNLAASLK--VHP 286

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +  +  +++R ++   +R+    +       +   
Sbjct: 287 YRVKLALQTIRHFDYKQLRDAYLGLVETEREMKSSN 322


>gi|29376940|ref|NP_816094.1| DNA polymerase III subunit delta [Enterococcus faecalis V583]
 gi|227519837|ref|ZP_03949886.1| DNA polymerase III subunit delta [Enterococcus faecalis TX0104]
 gi|227553978|ref|ZP_03984025.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22]
 gi|229545134|ref|ZP_04433859.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322]
 gi|229549382|ref|ZP_04438107.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 29200]
 gi|256616997|ref|ZP_05473843.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 4200]
 gi|256963613|ref|ZP_05567784.1| DNA polymerase III subunit delta [Enterococcus faecalis HIP11704]
 gi|257079677|ref|ZP_05574038.1| DNA polymerase III subunit delta [Enterococcus faecalis JH1]
 gi|257081976|ref|ZP_05576337.1| DNA polymerase III subunit delta [Enterococcus faecalis E1Sol]
 gi|257087476|ref|ZP_05581837.1| DNA polymerase III subunit delta [Enterococcus faecalis D6]
 gi|257090635|ref|ZP_05584996.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188]
 gi|257416683|ref|ZP_05593677.1| DNA polymerase III subunit delta [Enterococcus faecalis AR01/DG]
 gi|257419899|ref|ZP_05596893.1| DNA polymerase III delta subunit [Enterococcus faecalis T11]
 gi|294780835|ref|ZP_06746190.1| DNA polymerase III, delta subunit [Enterococcus faecalis PC1.1]
 gi|307270795|ref|ZP_07552085.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4248]
 gi|307271553|ref|ZP_07552825.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0855]
 gi|307277120|ref|ZP_07558224.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2134]
 gi|307285772|ref|ZP_07565906.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0860]
 gi|307287675|ref|ZP_07567718.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0109]
 gi|312953527|ref|ZP_07772365.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0102]
 gi|29344405|gb|AAO82164.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227072727|gb|EEI10690.1| DNA polymerase III subunit delta [Enterococcus faecalis TX0104]
 gi|227176881|gb|EEI57853.1| DNA polymerase III subunit delta [Enterococcus faecalis HH22]
 gi|229305619|gb|EEN71615.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 29200]
 gi|229309679|gb|EEN75666.1| DNA polymerase III subunit delta [Enterococcus faecalis TX1322]
 gi|256596524|gb|EEU15700.1| DNA polymerase III subunit delta [Enterococcus faecalis ATCC 4200]
 gi|256954109|gb|EEU70741.1| DNA polymerase III subunit delta [Enterococcus faecalis HIP11704]
 gi|256987707|gb|EEU75009.1| DNA polymerase III subunit delta [Enterococcus faecalis JH1]
 gi|256990006|gb|EEU77308.1| DNA polymerase III subunit delta [Enterococcus faecalis E1Sol]
 gi|256995506|gb|EEU82808.1| DNA polymerase III subunit delta [Enterococcus faecalis D6]
 gi|256999447|gb|EEU85967.1| DNA polymerase III subunit delta [Enterococcus faecalis CH188]
 gi|257158511|gb|EEU88471.1| DNA polymerase III subunit delta [Enterococcus faecalis ARO1/DG]
 gi|257161727|gb|EEU91687.1| DNA polymerase III delta subunit [Enterococcus faecalis T11]
 gi|294452080|gb|EFG20527.1| DNA polymerase III, delta subunit [Enterococcus faecalis PC1.1]
 gi|295113493|emb|CBL32130.1| DNA polymerase III, delta subunit [Enterococcus sp. 7L76]
 gi|306501413|gb|EFM70716.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0109]
 gi|306502533|gb|EFM71800.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0860]
 gi|306506050|gb|EFM75216.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2134]
 gi|306511825|gb|EFM80823.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0855]
 gi|306512909|gb|EFM81551.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4248]
 gi|310628539|gb|EFQ11822.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0102]
 gi|315025367|gb|EFT37299.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX2137]
 gi|315146722|gb|EFT90738.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX4244]
 gi|315150116|gb|EFT94132.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0012]
 gi|315152017|gb|EFT96033.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0031]
 gi|315159045|gb|EFU03062.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0312]
 gi|315161638|gb|EFU05655.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0645]
 gi|315166360|gb|EFU10377.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1341]
 gi|315174002|gb|EFU18019.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1346]
 gi|315574322|gb|EFU86513.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0309B]
 gi|315579115|gb|EFU91306.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0630]
 gi|315580203|gb|EFU92394.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX0309A]
 gi|327535730|gb|AEA94564.1| DNA-directed DNA polymerase III delta subunit [Enterococcus
           faecalis OG1RF]
 gi|329572340|gb|EGG53997.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1467]
          Length = 342

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 125/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|303251266|ref|ZP_07337444.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252501|ref|ZP_07534397.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649808|gb|EFL79986.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860093|gb|EFM92110.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 341

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 112/313 (35%), Gaps = 18/313 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  LI E  +   +   +   D    V +      ++    +    S  LF 
Sbjct: 19  PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDTKWED---LFEAAQSNGLFF 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136
            ++II++    +     +  + E+   +  + ++I+     S  ++K     +I      
Sbjct: 76  NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C       L   I       +  I  EA Q+L  +  G+ +A +  LQ L     
Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+    K+++  +      + I+A ++GKI  A  +       ++    LL    +
Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251

Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310
           +   LLE     +   N +    +           +   +R   Q +++      + + +
Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311

Query: 311 HKIDHRIHLARKK 323
            ++       +++
Sbjct: 312 QRLAELEKQVKQE 324


>gi|315224748|ref|ZP_07866571.1| DNA-directed DNA polymerase III delta subunit [Capnocytophaga
           ochracea F0287]
 gi|314945376|gb|EFS97402.1| DNA-directed DNA polymerase III delta subunit [Capnocytophaga
           ochracea F0287]
          Length = 338

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 9/270 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + +  + ++       F  +VL   ++   + T  +      + S
Sbjct: 18  PIYFLMGEEPYFIDIVSDYIEDHVLQEDQKGFDQIVLYGQDVS--VPTIIDYARRFPMMS 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++I+++     K  +D L   +       +++   K  ++     L K  +K    + 
Sbjct: 76  DHQVIIVKEAQNLKSTIDQLVPYVENPTPTTVLVFCYKYEKLDARKKLLKTLQKNKDCVL 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +      +  +   + + L     SI  +A Q+L+  LG D    +NE+ KL+    E+ 
Sbjct: 136 LESKKLYENQIATWLPDVLKKKHLSIQPKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            +T   ++  I  +      E+ NA     +Y    +   F  +    P    L      
Sbjct: 196 EVTPDIIEKNIGISKEFNNYELKNAIAVHDMYKITRILKHFADNPKDNPLVMTLTVLYGY 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           FQ L   H + + S  +   ++   +  I 
Sbjct: 256 FQQLLGFHGLTDQSEKN---VMATLKVPIF 282


>gi|312621883|ref|YP_004023496.1| DNA polymerase III subunit delta [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202350|gb|ADQ45677.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 335

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 138/349 (39%), Gaps = 27/349 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  ++ + I++    L    F  +++FYG +  LI E   +F   I     +  ++V  
Sbjct: 1   MAE-KTKEIIKELNSQLLKKDFKKIYLFYGQEIFLIDEYTKRFSHAIVGGNLN--NIVRF 57

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNH 112
           +      N +   NE+ S S   + ++++ +N       ++   +   ++ +      + 
Sbjct: 58  DGET--ANYNDIINEMFSISFDLEPRVLIFKNFFKYASTNSSLNLSSIIDNLKNFKSDST 115

Query: 113 IIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
            II K  E K+N   + L++IA     V      PD    L+  ++  +    K+IS   
Sbjct: 116 YIIFKEYETKENKLFSGLKQIAFSAEFVQ--PSMPD----LVKWVQNVMSKEGKTISDNM 169

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q ++ +   D +   N LQ L SY  +   +T   +   + D    +I ++++A     
Sbjct: 170 AQEIILHYNKDMMLIYNYLQVLISYLGKRSKVTHDDILKTLTDNPQDHIFQMLDAFATKD 229

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           + +           +     +L   L+ F++L  +  ++E +     K +   E     +
Sbjct: 230 LESGYKYLRELYQLRTSVSKILALILRHFKILGMLKEMQETNKKQIAKQLGILE---FFV 286

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            +   ++    +  + ++  + K     ++ ++ +  ++  +   +  I
Sbjct: 287 DK--YKKQAETFTLDKIKTIIQKTIECEYMIKRGQIDDETALEMLLYQI 333


>gi|257868068|ref|ZP_05647721.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC30]
 gi|257874398|ref|ZP_05654051.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC10]
 gi|257876957|ref|ZP_05656610.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20]
 gi|257802151|gb|EEV31054.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC30]
 gi|257808562|gb|EEV37384.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC10]
 gi|257811123|gb|EEV39943.1| DNA polymerase III subunit delta [Enterococcus casseliflavus EC20]
          Length = 345

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 123/297 (41%), Gaps = 21/297 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           +++  GS+  L  ++   F +  S+   D    +   + +++K+       E  S   F 
Sbjct: 24  IYLVIGSEMFLQEQVRTAFLERFSVGKDD----LNFASFDMEKDPLDMVIQEAQSLPFFG 79

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
            ++++ +E    L+ EKK       LD     I   + + +++I ++  ++ +   + K 
Sbjct: 80  DQRLLFVERPFFLTAEKKSNAPEHDLDDFLNYIKDPLESSVMVIFADVDKLDERKKITKQ 139

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   V+ ++   +    +   +++SL      +S+EA  + L         +  ELQK
Sbjct: 140 LKKAAVVIDVAPMKE--ADVRQYLQQSLANDGIEMSREAFDLFLRLTDLHLSKAMQELQK 197

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y      IT++ V  +I  T    + E+ +  ++G + +A+ L D  L     +  +
Sbjct: 198 LRLYAGNGNKITKEIVLQLIPKTLEHNVFELTSDVLKGNVSDALRLYDDLLLQGEETIKI 257

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
               + + +LL +  I+ +     +++        I P +  +  +  R + +  + 
Sbjct: 258 NAILISQVRLLLQAAILMKIG---YQQANIAETLGIHPYRVKLAMQQARGFGEKQLA 311


>gi|257084528|ref|ZP_05578889.1| DNA polymerase III subunit delta [Enterococcus faecalis Fly1]
 gi|256992558|gb|EEU79860.1| DNA polymerase III subunit delta [Enterococcus faecalis Fly1]
          Length = 342

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 129/334 (38%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             +++ +EN   L+ E+K       ++ L   +       +++  ++  ++ +   + K 
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDERKKITKA 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  +++ +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 135 LKKNATIVDV--NPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALEMKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + +    
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLERLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|225873598|ref|YP_002755057.1| DNA polymerase III, delta subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225791876|gb|ACO31966.1| DNA polymerase III, delta subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 376

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 114/330 (34%), Gaps = 30/330 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++F G +  L           +       F L  L+  E+  NI    +   + SL 
Sbjct: 21  RPGYVFAGDEIFLYERCRKAILTALVPPEMRDFCLSDLDLSEV--NIFEALDRARTPSLM 78

Query: 81  SKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI---- 130
           +  +++ + NL       ++K+    +EE         +++  ++ ++     R++    
Sbjct: 79  APFQVLFLRNLKTLYTRGSKKEEFAAIEEYFRSPNPQALVLFVADHLRIPADPRRMDMDD 138

Query: 131 ---AEKFTSVLAISC------YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
               E+    L   C        D    L  L  ES    +  I  +A + L+  LG D 
Sbjct: 139 KNRYERLRETLGEWCGMVELARVDEADALRWLTAES-KQYEIQIDSDAARELVDALGADM 197

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +   NE +KL  Y  E   IT   V+ ++       + E+ +A        AI L    L
Sbjct: 198 MMVSNEFEKLVLYVGEKKRITLGDVETMVLAAKQRSLYELTDAISAKDKVRAISLLHGLL 257

Query: 242 ----ASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQ 295
                 +  +   L+   + F Q+L  +      S   ++ + Q            ++++
Sbjct: 258 NASDGGEDSAIGHLYMLARTFRQMLVILEKNVRDSRAIWQALWQGFRMPP--FAADDLIR 315

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
           ++ R  ++  +   L  I       R +  
Sbjct: 316 QARRYKSRRDLTRALRLIARADMELRSQPP 345


>gi|226939051|ref|YP_002794122.1| DNA polymerase III subunit delta [Laribacter hongkongensis HLHK9]
 gi|226713975|gb|ACO73113.1| HolA [Laribacter hongkongensis HLHK9]
          Length = 335

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 113/311 (36%), Gaps = 11/311 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E  +  +       H    ++ +       + S       S+SLF+
Sbjct: 18  PLYVIHGDEMLLALEAADAIRAAARAAGHLEREVLTVEGHF---DWSLLTAAAGSSSLFA 74

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +K+  I + +     +  + L  +  +   + + ++    + K     K  +   S  +
Sbjct: 75  DRKLLEIHLPSGKPGTEGAEALVRLAARLPDDTVTLVLLPRLDKTQQASKWFKALDSAGV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ++     +  L   I   L   Q+S++ EA   +   + G+ +A+R E+ KL+      
Sbjct: 135 TLAAQAVERRELPGWISRRLARQQQSLTPEALAFMADRVEGNLLAARQEIDKLAL-LHPP 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    ++  + D     + ++  A + G+      +     A        L    ++ 
Sbjct: 194 GELELAALQAAVADVARFDVFQLNAAWLAGETARVARMLAGLEAEGEAPVLALWSVAEEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L +I I          +++++    +   ++ + + +LR   +  ++  L +    I 
Sbjct: 254 RSLIRIRIGL-RDGKPMAQLLRENR--MWGERQRLAEPALRRLGQARLQAALSEC-AAID 309

Query: 319 LARKKKYLEKN 329
            A K     + 
Sbjct: 310 RAIKGAGPGEP 320


>gi|323490046|ref|ZP_08095267.1| hypothetical protein GPDM_11865 [Planococcus donghaensis MPA1U2]
 gi|323396342|gb|EGA89167.1| hypothetical protein GPDM_11865 [Planococcus donghaensis MPA1U2]
          Length = 342

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 113/312 (36%), Gaps = 20/312 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLF 80
            V++  G++   I + ++  K  +++        + L   ++ +       +E ++   F
Sbjct: 16  PVYLIVGTESYFIEKTLDLLKDKLTVDGE-----LELTFFDLDEVPVEHVIDEADTFPFF 70

Query: 81  SKKKIILIENLSTEKKV----------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
           S +K+I+  N S  K            L  LE  +     + + I  +   K +   +  
Sbjct: 71  SDRKLIIARNASFLKAAERGKEKINHDLKALEAWLEHPPSSSVTIFVAPYEKLDERKKVT 130

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +     + I         L   +        K I  +A Q L+   G +     +E++K
Sbjct: 131 KQMKQHTVLIEAKSLQANDLETWLMHEAKNFGKGIGIKAAQRLMEMAGTNLTLLSSEIEK 190

Query: 191 LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +S Y       IT + V+ +   T      +++ A + G +  A+ +    L  K    A
Sbjct: 191 MSLYLGSSDEDITVELVEQMTARTLEQDAFKMLQAYLDGNVSEALSVYYDLLRQKEEPVA 250

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L      + + + +++ + +      ++I ++ +    P +  +L E  +  ++  +   
Sbjct: 251 LTALLASQIRFMIQVYYL-QKKGYHAQQISKQLKA--HPYRVKLLVEKRQQISEKRLLLV 307

Query: 310 LHKIDHRIHLAR 321
           L  +       +
Sbjct: 308 LGDLADIDLQLK 319


>gi|322436272|ref|YP_004218484.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163999|gb|ADW69704.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX9]
          Length = 394

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 121/375 (32%), Gaps = 39/375 (10%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           S +F+ +           ++  G +  L     +     ++      F L  L+  E   
Sbjct: 12  SDRFLSELRSGSL--RPGYVLAGDEAFLYQRCRDGVLDALAPPDQRDFCLHDLDLGETA- 68

Query: 66  NISTFWNEINSTSLFSKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSN 119
            I    +   + SL    ++I +  L       ++K+    ++    +     +I+  ++
Sbjct: 69  -IFDVLDRAQTPSLMVPFQVIFVRGLKALYGRGSKKEEFAAIDAYFRRPNPQALILFVAD 127

Query: 120 EIKKNNTLRKI--AEKFTSVLAISCYPD----------NKIHLMDLIEESLLIGQKSISK 167
            +     LR++   +K           D           +      + E+       I  
Sbjct: 128 HLSIPTDLRRMDMTDKERYDRIRETLGDWCGLVELARVEEGDAARWLMETAAERGARIET 187

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDI-------------LITEQHVKDIICDTH 214
           +A + L+  LG D +   +E +KL  Y                   IT   V+ ++    
Sbjct: 188 DAARELVDALGADMMLIASEFEKLCLYAQGKQLLTLAGKPAVETPAITLGDVETMVLAAK 247

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFL----ASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
              + E+ +A        A+ L    L      +  +   L+   + F+ +  I      
Sbjct: 248 QRSLYELTDAISAKDRPRALGLLHGLLNASDGGEDSAIGHLYMLARTFRQMLIISEKNVR 307

Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
            + +   ++ +  +        +++++ R  ++  +   L  I       R     ++ +
Sbjct: 308 DSRAIWGVLWQGFRMPPFAAEELIKQARRYKSRGDLTRALRLIAKADLEIRSSPPDKRLV 367

Query: 331 IFQTILYIAQTACKN 345
           + + +L +A  A  N
Sbjct: 368 LERLVLGLATEAKVN 382


>gi|325920734|ref|ZP_08182640.1| DNA polymerase III, delta subunit [Xanthomonas gardneri ATCC 19865]
 gi|325548786|gb|EGD19734.1| DNA polymerase III, delta subunit [Xanthomonas gardneri ATCC 19865]
          Length = 342

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 101/287 (35%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGREF--DWNQLDATFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ I   +    K   D +         + +++I +N+  K +   K A+    +  
Sbjct: 76  PRRLVEIRLPSGKPGKDGADVITRFCANPPPDVVLLITANDWSKAHQ-GKWADAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           IS  +      L D IE  L          A Q L   + G+ +A+  E+ KL     + 
Sbjct: 135 ISVAWAIKPHELSDWIERRLRSHGLRADAAAVQRLSERVEGNLLAAAQEIDKLVLLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            ++  + ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KVLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|254443986|ref|ZP_05057462.1| DNA polymerase III, delta subunit [Verrucomicrobiae bacterium
           DG1235]
 gi|198258294|gb|EDY82602.1| DNA polymerase III, delta subunit [Verrucomicrobiae bacterium
           DG1235]
          Length = 369

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 100/263 (38%), Gaps = 21/263 (7%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINSTSLFSK 82
           G D  L   L  +    +     D FS+ V++       E+   ++ F + + +  LF  
Sbjct: 11  GPDDYLASRLAREIWAELKKDVTDDFSIEVISGQVGKVDEVADAVNRFRDAVQTLGLFGG 70

Query: 83  KKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKI 130
           ++++ +++                K+ + L+E++   N     ++I ++ + +     K 
Sbjct: 71  RRVVWLKDVTFVADNQVGRAEGTVKLCEDLQEVLESVNPAEVGVLISASPVDRRKRFAKY 130

Query: 131 AEKF---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            EK         +         L+  +       Q +I+++A ++L++ + G+      E
Sbjct: 131 LEKSGDYRPSGGMDSKGGGVETLLAAMNRECEALQVTIARDAVEVLISKVNGNSRLLIEE 190

Query: 188 LQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           ++KL +Y  E    IT + ++++  +       E   A     I   +        S   
Sbjct: 191 VRKLGTYLGEPGAQITSKLIEELTPNFGEGDFFESTEAFFSRDINWTLSALRRHFFSGND 250

Query: 247 SHALLHGFLQKFQLLEKIHIIKE 269
           +  ++     + +LL ++  + +
Sbjct: 251 ARPVIASLQNRNRLLIQLRSLVD 273


>gi|323495449|ref|ZP_08100526.1| DNA polymerase III subunit delta [Vibrio brasiliensis LMG 20546]
 gi|323310372|gb|EGA63559.1| DNA polymerase III subunit delta [Vibrio brasiliensis LMG 20546]
          Length = 337

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 117/319 (36%), Gaps = 14/319 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + + +++  K L   H  ++ +G++  L+ E     +K       +      +++     
Sbjct: 5   ADRLVEQLAKQL---HPTYLIFGNEPLLLQESRQAIQKAAHQQGFEERHRFAIDSSF--- 58

Query: 66  NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + +  ++   + SLFS ++II +E         +   L  +      + I++I  +++ K
Sbjct: 59  DWNLVYDCCQAMSLFSARQIIELELPEAGVNAGIAKELLSVSDLLHSDVILVIIGSKLTK 118

Query: 124 NNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                K  +  +S    ++C   +   L   ++            EA Q+L     G+  
Sbjct: 119 AQENAKWFKALSSQGCWVNCLTPDIQRLPQFVQVRCRALGLKPDPEAVQMLAQWHEGNLF 178

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L+KL+     D ++    +++ +   +       I+A + GK   +  +     A
Sbjct: 179 ALTQSLEKLAL-LYPDGVLNLVRLEESLSRHNHFTAFHWIDALLAGKAKRSQRILRQLEA 237

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
             + +  L     ++   L  +  + +       ++ +K    I   KR +   +L   +
Sbjct: 238 EGVETVILARTVQKELTQLLTMSQLVQTQ--PIGQVFEKYR--IWQSKRPLYSAALNRLS 293

Query: 303 KNLVRETLHKIDHRIHLAR 321
              + + L  +     + +
Sbjct: 294 PVKIMQLLQLLAQTERMIK 312


>gi|332686734|ref|YP_004456508.1| DNA polymerase III subunit delta [Melissococcus plutonius ATCC
           35311]
 gi|332370743|dbj|BAK21699.1| DNA polymerase III delta subunit [Melissococcus plutonius ATCC
           35311]
          Length = 345

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 120/298 (40%), Gaps = 21/298 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY-HDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            +++  G+++ LI      FKKN+S         L  L+    + ++     E  +   F
Sbjct: 17  PIYLLTGTEQYLIE----LFKKNLSQAIFKGDGQLNSLSFDMEETSLEVAIEEAETVPFF 72

Query: 81  SKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129
              ++I I+N    +S  K       +D L + I + +   ++++ +N  ++ +   + K
Sbjct: 73  DDYRLIFIKNPYFLMSERKNKEIEQNIDRLIDYIKQPLATSVVVLIANVAKLDQRKKITK 132

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + +K      I     N+  L    EE++     +I  +A ++L+     +     NE Q
Sbjct: 133 LLQKQ--AKNIDVNSMNERELYRYTEETIKAEGYTIRADALELLMQLTNFNLSKLINETQ 190

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL SY  +  +IT   VK+++  +    + E+ N  + GK   AI L    +        
Sbjct: 191 KLFSYAWDTKIITYIMVKELVPRSLEDNVFELANKLLIGKTDEAIELYKDLVLQGEEIIK 250

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
           L    + + +LL +  I+ +        I++     I P +  I  + +R      + 
Sbjct: 251 LNAILINQMRLLIQTKILVQLGYQQAN-IVETLG--IHPYRVKIAMQQVRNSELKHLE 305


>gi|329725384|gb|EGG61867.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           VCU144]
          Length = 324

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 119/343 (34%), Gaps = 42/343 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +F  YG    L+ +   +   +      D F+ V  N  E          E  +  
Sbjct: 1   MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124
            FS KK I+++N    + EK         D L + + K    ++II +    ++ +    
Sbjct: 59  FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118

Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
                    L+KI +              +  L   I+ +L    K I ++A ++ +   
Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +      EL+KL  +  E  +I ++ +  II  +    +  +     +G    AI L 
Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295
           +  +  K     LL      ++L  +  I+ +         K +        P +  +  
Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              R +    +   ++      +  +     ++ I+   IL +
Sbjct: 282 NQYRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324


>gi|227529054|ref|ZP_03959103.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351066|gb|EEJ41357.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 345

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 109/268 (40%), Gaps = 15/268 (5%)

Query: 71  WNEINSTSLFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEI 121
            ++  +   F +++++LI      + EK        LD L   +     + I++  +   
Sbjct: 63  LDDAMAAPFFGERRLVLINKPYFFTGEKGPAKIEHDLDSLSNYLQHPEPSTILVFLAPYE 122

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           K +   + + E     + +   P ++ H    +   L   Q +I + A   L+     D 
Sbjct: 123 KLDGRKKIVKELKKVAVTVDTAPLDEAHARQQVRAELTSDQYTIDETAIDELVQRTNADY 182

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                 L KL     +D  IT+Q VK+++  +    + +++NA ++     +I L D  +
Sbjct: 183 ELMNANLSKLKLLTYQDRHITQQAVKELVPQSLDENVFDLVNAVLKHDQPRSIDLYDQLI 242

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           A + P   +    + +F+LL +I I+     +S   + QK +  + P +  +   ++R +
Sbjct: 243 AGQQPPLRINAVLISQFRLLLQIKILS-SRGLSQGSLAQKLK--VHPYRVKLGLRTVRQF 299

Query: 302 NKNLVRET---LHKIDHRIHLARKKKYL 326
           +   +      L  I+  +   ++   L
Sbjct: 300 SLLALENAYLGLVNIEKALKTTQRDPRL 327


>gi|190150202|ref|YP_001968727.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307256927|ref|ZP_07538705.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307263540|ref|ZP_07545155.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915333|gb|ACE61585.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306864661|gb|EFM96566.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871183|gb|EFN02912.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 341

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 112/313 (35%), Gaps = 18/313 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  LI E  +   +   +   D    V +      ++    +    S  LF 
Sbjct: 19  PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDTKWED---LFEAAQSNGLFF 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136
            ++II++    +     +  + E+   +  + ++I+     S  ++K     +I      
Sbjct: 76  NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C       L   I       +  I  EA Q+L  +  G+ +A +  LQ L     
Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+    K+++  +      + I+A ++GKI  A  +       ++    LL    +
Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251

Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310
           +   LLE     +   N +    +           +   +R   Q +++      + + +
Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311

Query: 311 HKIDHRIHLARKK 323
            ++       +++
Sbjct: 312 QRLAELEKQVKQE 324


>gi|315164898|gb|EFU08915.1| DNA polymerase III, delta subunit [Enterococcus faecalis TX1302]
          Length = 342

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 126/334 (37%), Gaps = 20/334 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  L         K +     D F+    +  E   + +    E  +   F 
Sbjct: 17  PVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPLSAAI--AEAETIPFFG 74

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
             +++ +EN   L+ E+K       ++ L   +       +++  ++  K +   RK   
Sbjct: 75  DYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMASYEKLDE--RKKIT 132

Query: 133 KF--TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K    +   +   P ++  +   I +++     +I  +A  +LL     +      ELQK
Sbjct: 133 KALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTDLNLSKIMGELQK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y LE   IT   V++++  +    + ++ N  + G    A+ L +  L     +  L
Sbjct: 193 LYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYEDLLLQGEETIKL 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L + +L  +  I+          I    +  + P +  +  + +R +  + ++   
Sbjct: 253 NAILLNQIRLFLQTKILA-KMGYQQANIADTLK--VHPYRVKLALQQVRRFELSRLKRLY 309

Query: 311 HKIDHRIHLARKKKYLEKNIIFQ-TILYIAQTAC 343
            ++    +   K   ++K ++FQ  IL +   A 
Sbjct: 310 DELVENDYRM-KTGQMDKELLFQLFILKLTAQAK 342


>gi|75909675|ref|YP_323971.1| DNA polymerase III subunit delta [Anabaena variabilis ATCC 29413]
 gi|75703400|gb|ABA23076.1| DNA polymerase III, delta subunit [Anabaena variabilis ATCC 29413]
          Length = 329

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 127/333 (38%), Gaps = 16/333 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   I + +   +  +       F+       + +  I    N++ +    +
Sbjct: 2   PIYVYWGEDDFAIAKAVTTLRDRVLDPLWTSFNYTSFPPEDSEAPIQAL-NQVMTPVFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             +++ + N +      + VL  L   +     N  +++         +K    L++ A 
Sbjct: 61  GGRLVWLMNTNLLQNCPENVLAELTRTLSVIPENSFLLLTCRNKPDERLKSTKLLKQSAT 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +F     I  +      L+  + ++       ++ ++ ++L   +G D     NE++KL 
Sbjct: 121 EFREFPLIPPWKTEL--LIQAVNQAAQTVGVKLTPKSAELLAEAVGNDTRLLYNEMEKLR 178

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y  ++   I E  V  ++ +T    ++ +  A   G    A+ +    + +  P   ++
Sbjct: 179 LYAEDNNRPIEENTVTRLVRNTTQNSLQ-LAAAIRVGDTAKALTILADLINAAEPELRII 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F+    + ++ E    + + I Q  E    P +   LQ+ ++  +   +   L 
Sbjct: 238 ATLIGQFRTWLWVKLMVESGERNPQAIAQAAEIG-NPKRIYFLQQEVQSLSLRQLISCLP 296

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            +       ++ +  E +I+   I+ + Q   +
Sbjct: 297 LLLELEVTVKQGRA-EISILQIKIIELCQLCQR 328


>gi|166711419|ref|ZP_02242626.1| DNA polymerase III subunit delta [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 342

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 18  PVYLIAGPETLRVLEAADAVRARARAEGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K AE    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAVGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L       +  A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IAVAWAIKPHELSDWIERRLRAHGLRAAAAAVQRLSERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  Q ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KTLDLQAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTASL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|320162445|ref|YP_004175670.1| DNA polymerase III delta subunit [Anaerolinea thermophila UNI-1]
 gi|319996299|dbj|BAJ65070.1| DNA polymerase III delta subunit [Anaerolinea thermophila UNI-1]
          Length = 332

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 113/314 (35%), Gaps = 21/314 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G+D   +   I+  ++ +        +L  L+     ++    +N   +    ++
Sbjct: 7   VYVLHGNDVHAMQAFIHTLREKLGDPAVADLNLTRLDGRTASED--DIFNAAGAMPFLAE 64

Query: 83  KKIILIEN---LSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---------KKNNTLRKI 130
           ++++++ +     T +       + +        +++   +I            +  R  
Sbjct: 65  RRLVILTHPFTRLTAESARQRFCQRLETLPETTALVLVIEDIIERRSWVHFPPKHWFRAW 124

Query: 131 AEKF-TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            EK    V    C   +   +   I++         + EA   L  ++G D   +R E++
Sbjct: 125 MEKAGKRVHYHLCTLPDLSAMPAWIQKEARSLGGQFTAEAAAELARHVGNDTQTARQEIE 184

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL +Y      +  + V ++        +  +++A  +G    A       L  +    +
Sbjct: 185 KLLTYVNFQRAVELEDVAELTAQGGEADLFAMMDAIAEGNARLA-QNLLHRLLEEEDELS 243

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR-- 307
           L    +++F+LL     + +      + +      +    ++++     R ++   +   
Sbjct: 244 LFGMIVRQFRLLLLARELLDEGKGVADFLQAGISTSQFVAEKSL--RQARRFSMAQLEEI 301

Query: 308 -ETLHKIDHRIHLA 320
             TL+++D  +  +
Sbjct: 302 YRTLYEMDGAVKTS 315


>gi|304316630|ref|YP_003851775.1| DNA polymerase III subunit delta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778132|gb|ADL68691.1| DNA polymerase III, delta subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 330

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 118/283 (41%), Gaps = 14/283 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++FYG ++ LI E + + K  +     D   ++ L+ +E   + +   + + +    S
Sbjct: 18  PAYVFYGEERFLIDEAVKKLKNKLLTDGTD---IMNLSIIENVDDKNVI-DSLETLPFMS 73

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAEKFTS 136
             ++ILI++    KK+ D     IIK+I +      I  I  ++I     L K   K  +
Sbjct: 74  DHRLILIKDDEFFKKLNDSTINNIIKHIEDGDTNNCIAFIFGDKIDMRKKLFKTISKVGA 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           ++        +   ++ +   +    K I K   + ++ N+G D     NE++K  SY  
Sbjct: 134 IVNFEHLKYEEA--VNYVGFFVRKYGKVIKKPVAEYIVKNIGVDLYRLLNEVKKFVSYS- 190

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I    VK +I       +  ++NA    +   AI + +  +A+      +L    +
Sbjct: 191 NDKEILIDDVKFLISSNISESVFRLVNAIGLKQESTAIYVLNKMIANAENPIGILAMIGR 250

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
           +F++L K        N+  +++  +          +I+++S R
Sbjct: 251 QFRILLKAKYFL-KQNLDRKELQSRLGIP-YFSINDIIEQSKR 291


>gi|156934840|ref|YP_001438756.1| DNA polymerase III subunit delta [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533094|gb|ABU77920.1| hypothetical protein ESA_02688 [Cronobacter sakazakii ATCC BAA-894]
          Length = 343

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 107/305 (35%), Gaps = 11/305 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++  G+D  L+ E  +   +         F       +++  +    ++   + SLF
Sbjct: 18  RAAYLVLGNDPLLLQESQDAIHQQAQAHG---FEEHHRFIIDVSTDWQAIFSLCQAMSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++ +L+          + + L  ++     + ++I++ N++ K               
Sbjct: 75  ASRQTLLLALPENGPNAAINEQLATLVSLLHDDLLLIVRGNKLTKAQENAAWITALSDRA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + I+C    +  L   +          +   A Q+L     G+ +A    L++LS     
Sbjct: 135 VQITCQTPEQAQLPRWVANRAKQMNLQLDDAACQLLCYCYEGNLLALAQALERLSL-IWP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A + GK   A+ +             LL    ++
Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILQQLRQEGAEPVILLRTLQRE 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L  +   ++ +N     +  +    +   +R ++ E+L   + + + + +  +    
Sbjct: 254 LLTLVTLK--RQSANTPLRALFDQHR--VWQNRRVLISEALSRLSDDRLWQAVRLLTQCE 309

Query: 318 HLARK 322
              ++
Sbjct: 310 ITLKQ 314


>gi|146296059|ref|YP_001179830.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409635|gb|ABP66639.1| DNA polymerase III, delta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 334

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 134/345 (38%), Gaps = 26/345 (7%)

Query: 5   ESHKFIQKSTKNLFLSHF--VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
           +S + I++    L    F  +++FYG +  LI E    + K IS+T  +     ++    
Sbjct: 3   KSKEIIKELNSQLLKKEFKKIYLFYGQEIFLIDE----YTKRISMTIVNGNINNIIRFDG 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIII 116
              N +   NE+ S S   + ++++ +N       ++   +   +E +   N     II 
Sbjct: 59  EDANYNDIVNEMISISFDLQPRVLIFKNFFKYSTTNSNLNLSAIVERLKDFNSDKVYIIF 118

Query: 117 ---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
              ++ E K  N+L+ IA            PD    L+  ++  +    K IS+   Q +
Sbjct: 119 KEYEAKENKLFNSLKSIAFSAEF--TTPSMPD----LIKWVQNIMAKEGKVISENMAQEI 172

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           + +   D +   N LQ L SY  +      + +   + D    +I ++++A     + + 
Sbjct: 173 IMHYNKDMMLIYNYLQVLISYLGKKSRPAHEDILKTLTDNPQDHIFQMLDAFATKDVESG 232

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
                     K     +L   L+ F++L  +  ++E +     K +   E     + +  
Sbjct: 233 FRYLKELYQLKTSVSKILALILRHFKILGMMKELQETNKKQIAKQLGILE---FFVDK-- 287

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            ++    +  + ++  + +     ++ ++ +  ++  +   +  I
Sbjct: 288 YKKQSEAFTLDKIKNIIQRTIEYEYMIKRGQIDDETALEMLLYQI 332


>gi|229006664|ref|ZP_04164298.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock1-4]
 gi|228754525|gb|EEM03936.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock1-4]
          Length = 337

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++KI+L+++   L ++K+ L+     LEE + +     I++  +   K +   +      
Sbjct: 73  ERKILLVKSPLFLISQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I   +      I + A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT   V +++  +    +  +    ++  I  A+++ D     +     LL   
Sbjct: 193 VGIGGEITTGLVAELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|300772707|ref|ZP_07082577.1| DNA-directed DNA polymerase III delta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761010|gb|EFK57836.1| DNA-directed DNA polymerase III delta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 334

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 114/328 (34%), Gaps = 23/328 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +   I  + +  + ++       F   +L   +   +  T  N      + S
Sbjct: 17  PVYLLHGEEPYFIDLISDTIESSVLDDAQKGFDQTILYGKDT--DFITIVNAAKRYPMLS 74

Query: 82  KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSV 137
             ++ILI+     K  +  + L   +     + +++      +  K   L K  EK   V
Sbjct: 75  DHQVILIKEAQDLKWKQGEELLLNYVEHLTPSTVLVFNYKYGKFDKRKKLYKAIEKAGEV 134

Query: 138 L-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           + +   Y D    +   I   +     SI  +A  ++   LG D     NEL KL     
Sbjct: 135 VESNKLYED---KVAGWITSYVKDHGWSIHPQAAAMMAEYLGTDLSKVSNELDKLMLNVP 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254
           +   I    ++  I  +    + E+  A  +     A  + D+F A+    P   +L   
Sbjct: 192 KSTEIGAGDIELNIGISKDFNVFELNTALAKRNALKAYQIVDYFAANPKNNPLVVVLGAM 251

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              F  + K H + + S  + E  +          +    + + R +N+    + ++ + 
Sbjct: 252 GGYFTKVLKYHYLPDKSAAAKELGVH----PFFIKE---YEIAARNYNRRKTFDIINHLK 304

Query: 315 HRIHLARKKKYLE----KNIIFQTILYI 338
                ++           +I+ + I  I
Sbjct: 305 EADLKSKGMNVGSNTGTDDILREMIFNI 332


>gi|56751120|ref|YP_171821.1| DNA polymerase III subunit delta [Synechococcus elongatus PCC 6301]
 gi|56686079|dbj|BAD79301.1| DNA polymerase III delta subunit [Synechococcus elongatus PCC 6301]
          Length = 332

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 105/292 (35%), Gaps = 16/292 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ F+G D+  + + + + +          F+   +   E    +    +   +    +
Sbjct: 2   PVYYFWGEDEFALRQAVEKLRDRSVDPMWASFNSERI-PPEQADGVLVALSLALTPPFGA 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKS-----NEIKKNNTLRKIAE 132
            ++ I +      ++  D +   + +         +++  S       +K    L+K+AE
Sbjct: 61  GQRFIWLPETPLAQQCSDAVYAELTRTLPQMPETTVLLFSSTGKPNGRLKSTKLLQKVAE 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                  I  +      L   + +        + +EA   L A +G       +EL+KL 
Sbjct: 121 -LKEFSPIPPWRGEA--LEQQVVQVAHEVGVRLDREAVACLAAAVGNQTRQLYSELEKLK 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +  +    +T + V+ ++  T    ++ +  A  QG    A+ L    +AS  P+  + 
Sbjct: 178 LFQGDRSEPVTARIVQALVSTTTQNSLQ-LAAAIRQGDCDRALSLVSDLIASNEPALRIS 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
              + +F++   + +++E      + I         P + + + + +R    
Sbjct: 237 ATLIGQFRMWLWVKLLQERGERDPQAIATAAGIG-NPKRVHFVLQEVRSLTS 287


>gi|317128291|ref|YP_004094573.1| DNA polymerase III subunit delta [Bacillus cellulosilyticus DSM
           2522]
 gi|315473239|gb|ADU29842.1| DNA polymerase III, delta subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 342

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 112/272 (41%), Gaps = 16/272 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G+++ ++ + I+   KN        F+L   +  E    I     E  +      
Sbjct: 18  VYVLTGTEQYILEDTIHLIIKNTLADEEKEFNLSTYDMKEY--PIELAVEEAYTFPFMGG 75

Query: 83  KKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA 131
           K+++++++    +++K           LE  +       ++I+ +   ++ +   + K+A
Sbjct: 76  KRVVIVKDAYFLTSQKVSSKIEHNTKQLEGYLENPAPETVLILLAPYEKLDERKKIVKLA 135

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +K    ++ S     +  L   I +       +I   A + L+       +   +E++KL
Sbjct: 136 KKAGEYVSGS--ALEEKDLKLWIMDRARDNNVTIDDLAIEQLVLLTSAKLMILASEIKKL 193

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + +  +   ITE+ V +++  +    I  ++   ++ +I ++  +    +  K     ++
Sbjct: 194 AIHVGDGGRITEEIVNELVPRSLEQNIFSLVEGVVRREISHSWAIFLDLIKQKEEPLKII 253

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
              +++F++L ++         S ++I  + +
Sbjct: 254 ALMVRQFRILYQVK-QLTLQGYSQKQIAGQLK 284


>gi|271499705|ref|YP_003332730.1| DNA polymerase III subunit delta [Dickeya dadantii Ech586]
 gi|270343260|gb|ACZ76025.1| DNA polymerase III, delta subunit [Dickeya dadantii Ech586]
          Length = 343

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 113/307 (36%), Gaps = 13/307 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
              ++ +G++  L+ E  +  +       + + FS      ++   +    ++   + SL
Sbjct: 18  RGCYLLFGNEPLLLQESQDHIRAVARQQDFLEHFSFT----IDNNTDWDAIFSTCQALSL 73

Query: 80  FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           F+ ++  ++++ +        + L ++      + +++++ N++ K        +     
Sbjct: 74  FAPRQTLLLILPDTGPGAPASEQLVKLTTLLHPDILLMVRGNKLTKAQENSAWFKALSQQ 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + + C    +  L   + +     +  +   A Q++     G+ +A    L++LS    
Sbjct: 134 GVYVPCMTPEQEQLPRWVAQRARNMKLELDDAASQLICYCYEGNMLALVQALERLSL-LY 192

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   V+  + D         ++A + GK   A  +             LL    +
Sbjct: 193 PDGKLTLPRVEQAVNDAAHFTPFHWLDALLGGKSKRAWHILQQLRLEDCEPVILLRTVQR 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  LL ++             ++ + +  +   +R +L ++L+  +   +++ +  +   
Sbjct: 253 ELLLLLQLKRRMT--GTPLRTLLDQHK--VWQNRRPLLTQALQRLSLTQLQQAITLLSRL 308

Query: 317 IHLARKK 323
               ++ 
Sbjct: 309 EITLKQN 315


>gi|326799870|ref|YP_004317689.1| DNA polymerase III subunit delta [Sphingobacterium sp. 21]
 gi|326550634|gb|ADZ79019.1| DNA polymerase III, delta subunit [Sphingobacterium sp. 21]
          Length = 335

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 111/312 (35%), Gaps = 15/312 (4%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      +++ +G +   I  +++  +  +       F+  +L   +   +  T  N   
Sbjct: 11  NKRKLKPIYLLHGEEAYYIDLIVHALENKVLSEAEKGFNQTILYGKDT--DWVTILNTAK 68

Query: 76  STSLFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIA 131
              + S  ++++I+     K    D   +  ++      ++  +   ++  K   + K  
Sbjct: 69  RYPMMSDYQVVIIKEAQNLKWDKADEFFQAYVEKPLTTTVLAFAYKYSKFDKRKKIYKAI 128

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           EK   VL  +   DN   L   I+E +      I  +A  ++   LG +     NEL K+
Sbjct: 129 EKSGVVLESAKIYDN--KLAPWIDEYVKERGMKIHPQAAAMMGEYLGTELSKVANELDKM 186

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249
                +D  I    V++ I  +    I E+  A  +  +     + D+F A+    P   
Sbjct: 187 MLNVPKDREIGVTDVQNNIGISKDFNIFELNTALGKKDVLKVNQIIDYFSANPKSNPIPV 246

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           ++      F  + K H + + S  S  K +      + P      + + R +    +   
Sbjct: 247 VMGSLYGYFSKILKFHYLPDKSQQSAAKEL-----GVHPFFVKDYELAARNYPIMKLFHI 301

Query: 310 LHKIDHRIHLAR 321
           +  +      ++
Sbjct: 302 IGYLREYDLKSK 313


>gi|57867049|ref|YP_188730.1| DNA polymerase III subunit delta [Staphylococcus epidermidis RP62A]
 gi|251811003|ref|ZP_04825476.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875985|ref|ZP_06284852.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           SK135]
 gi|293366453|ref|ZP_06613130.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|57637707|gb|AAW54495.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|251805513|gb|EES58170.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295010|gb|EFA87537.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           SK135]
 gi|291319222|gb|EFE59591.1| DNA-directed DNA polymerase III delta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735229|gb|EGG71521.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           VCU045]
          Length = 324

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 119/343 (34%), Gaps = 42/343 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +F  YG    L+ +   +   +      D F+ V  N  E          E  +  
Sbjct: 1   MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124
            FS KK I+++N    + EK         D L + + K    ++II +    ++ +    
Sbjct: 59  FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118

Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
                    L+KI +              +  L   I+ +L    K I ++A ++ +   
Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +      EL+KL  +  E  +I ++ +  II  +    +  +     +G    AI L 
Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295
           +  +  K     LL      ++L  +  I+ +         K +        P +  +  
Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              R +    +   ++      +  +     ++ I+   IL +
Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324


>gi|315641041|ref|ZP_07896124.1| DNA-directed DNA polymerase III delta subunit [Enterococcus
           italicus DSM 15952]
 gi|315483210|gb|EFU73723.1| DNA-directed DNA polymerase III delta subunit [Enterococcus
           italicus DSM 15952]
          Length = 344

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 133/341 (39%), Gaps = 21/341 (6%)

Query: 12  KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTF 70
           K+   +     V+   GS+  L  ++   F + ++IT +D  F+ + L    + +     
Sbjct: 8   KTIATIETLQPVYCIQGSESYLQQKVKEAFLQRMAITENDLNFTQIDLELFTVDQ----L 63

Query: 71  WNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEI 121
            +E  +   F  ++++   N   L++EKK       LD L E +   +   +++  +   
Sbjct: 64  IDEAETVPFFGDQRLLFAMNPYFLTSEKKTNGPDHNLDRLIEYLNSPLQTTVLVFFAPYD 123

Query: 122 KKNNTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           K +   RK   K      + I   P  +  +  ++ E L      I  +A +  L +   
Sbjct: 124 KFDE--RKKITKRLKKQAVLIDTKPLAENEVKRMVHEKLKQANVDIEPQALEQFLRSTEM 181

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D   + +EL+KL  +      IT + V+ +I  T    + E+    ++GK   A+     
Sbjct: 182 DLSKAMHELEKLILFASATGRITGKAVEQLIPKTLENNVFELTEMILKGKADGALEGYRE 241

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
            L     +  +    + + +L  ++ I+ E   +    I  + +    P +  +  +  R
Sbjct: 242 LLLQGEETIKINAILIGQIRLYLQVAILME-QGMQQGAIADQVKA--HPYRVKLAMQQSR 298

Query: 300 IWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
            ++++ +     ++    +  +  +  ++ +    IL  A 
Sbjct: 299 KYSRSELEGLFDQLVENDYKMKTGQMTKEYLFELFILQTAN 339


>gi|260902408|ref|ZP_05910803.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ4037]
 gi|308109410|gb|EFO46950.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ4037]
          Length = 302

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 112/288 (38%), Gaps = 13/288 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDTSLDWNQVYDCFQALSLFSS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           +++I +E         +   L+ +      + +++I   ++ K     K   K  +    
Sbjct: 76  RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +SC   +   L   ++           +++ Q+L     G+  A    L+KL+     D
Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +       I+A + GK   A  +     A  + +  L+    ++F
Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEF 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             L  +H  ++ + +S  ++ +K    +   KR +   +L   + + +
Sbjct: 254 NQLLSMH--QDLTQMSISQVFEKYR--VWQNKRPLYNAALMRLSASRI 297


>gi|237749490|ref|ZP_04579970.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13]
 gi|229380852|gb|EEO30943.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13]
          Length = 336

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 120/330 (36%), Gaps = 23/330 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +  L  E  ++ +            ++ +                N+ SLF 
Sbjct: 18  PLYILTGDEHLLALEAADRIRHAARTRDFTEREVLTVERSF---KWGQLQATNNAMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTS 136
            KK+I   I      K+    L+E +     ++I +I   ++    + +      +K   
Sbjct: 75  DKKLIELRIPTGRPGKEGSTALQEYVAGLNPDNITLITLPKLDWTTQKSAWVSALQKHGI 134

Query: 137 VLAISCYPDNKIHLMDL---IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            + +       I L  L   I   L   ++SI +E    L+  + G+ +A+  E+QKL+ 
Sbjct: 135 YIDVP-----TIDLSRLGNWISSRLAKQKQSIDREGIDFLVNRVEGNLLAAHQEIQKLAL 189

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               +  ++ + V   + +     + ++  A + G     I + +       P   +L  
Sbjct: 190 -LFPEGKLSFEQVCSSVLNVARYDVFKLTEAMLGGNRTRFIKMVEGLKGEGEPLPLILWT 248

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH-- 311
              + + L K  +  E    +F  + +     +   +   +Q ++   +KN +++ L   
Sbjct: 249 VTDEIRTLLKCKMALE-EGQAFASVSKSLR--LRGPRERFIQSTVNRLDKNNLQKALQQT 305

Query: 312 -KIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
            +ID  I   R    ++      T L ++ 
Sbjct: 306 AQIDKIIKGLRSDSMMDDAWDALTQLGLSI 335


>gi|189485372|ref|YP_001956313.1| DNA polymerase III delta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287331|dbj|BAG13852.1| DNA polymerase III delta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 339

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 134/348 (38%), Gaps = 21/348 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVL 58
           M  ++ H F +  +     S  V++  G +   I   +N+ +K  +      D F     
Sbjct: 1   MNILKMHDFNKLISLQKISS--VYLLAGEESYFINMCLNKIEKFTATDDLNRDVFYASES 58

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIK 117
           +A +I        N + +    S+ ++++++ ++  K +  + L + +   I    +I+ 
Sbjct: 59  SADDI-------LNALQTLPFLSEIRVVIVKGVNKMKAIDAERLTDYLSNTIETSCLILL 111

Query: 118 SNEIKKNNTLRKIAE------KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
             +  K  T+ K  E         + ++++C    +  + + I+       K +S +   
Sbjct: 112 YFDNYKKETVAKRREFINKCIASKNCVSVNCRKQYENEVKEFIKNEFAQKGKEVSYDVIS 171

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKI 230
            ++   G D +   NE++KLS +  ++   IT++ ++ I   T    I  + +      +
Sbjct: 172 RIIEENGNDLLNISNEIEKLSLFAGKNKKDITQEDLEKISGYTKETGIYALSSEIEARDL 231

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
              + + +  L  +     +L       + +     + E   +S  +I      +    +
Sbjct: 232 KKTMFVLEKLLNEREEPVIILSAISSVVRKMLNAKSMIEEQGLSTAEIASALRIHDFYAE 291

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
                 +L+ ++ + ++E+L  I       +       + + +TIL I
Sbjct: 292 T--FFTNLKKYSTDTLKESLKTILKTDTAIKTGSNDAASALEKTILSI 337


>gi|257063738|ref|YP_003143410.1| DNA polymerase III, delta subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791391|gb|ACV22061.1| DNA polymerase III, delta subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 327

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 101/320 (31%), Gaps = 16/320 (5%)

Query: 22  FVFIFYGSD---KGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINS 76
             ++  G D   +  + + +      +       D F    +   ++           N+
Sbjct: 9   PAYLIVGEDELKRNTVLKRLRSRVAALGDIDFNSDYFEGPNVTGEDV-------VTSCNT 61

Query: 77  TSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
               S  +++++++    +K     + + + +     ++ + + ++ KN  L K   K  
Sbjct: 62  VPFASDVRLVVVKSGEGLKKAAATAIADYLKEPCTTTVLAVVATKMAKNTALYKAMAKVG 121

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               I C P  K  L D +    L     ++ +A   L+  +G + +    ELQK++   
Sbjct: 122 RQAVIDCSPMTKKELPDKVRGMALTHGFGMNLDAASRLVDLVGENTVRIDAELQKIALAH 181

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                +    V+ ++  T      +  +A     +   + + +   +       LL   +
Sbjct: 182 TGKQPVGVSEVEALVARTAEAKPWDFSDAFGARNVNQMLAVWNRLDSG--SVFVLLGRCV 239

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
              + L     + +    S + +            RN    + R W    +R  L     
Sbjct: 240 TVLRELLTCKALAKRGQTSQQALAAALGNVPTWKVRNHQAWA-RQWTAEELRHALSAARD 298

Query: 316 RIHLARKKKYLEKNIIFQTI 335
                +     E   +   +
Sbjct: 299 CERAMKSGSNPEDAFLKWVL 318


>gi|228999116|ref|ZP_04158698.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock3-17]
 gi|228760733|gb|EEM09697.1| DNA polymerase III, delta subunit [Bacillus mycoides Rock3-17]
          Length = 337

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 124/322 (38%), Gaps = 13/322 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLIYGTEVYFINETIKLITTEALAEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++KI+L+++   L ++K+ L+     LEE + +     I++  +   K +   +      
Sbjct: 73  ERKILLVKSPLFLISQKEKLEQNLKILEEYVAEPSPFSIVVFVAPYEKLDERKKITKLLK 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +   I   +      I + A  +LL  +G +      E+ KL+ Y
Sbjct: 133 KTADVVEASTMQVQDVRKWIVARVDEVHVHIEEAAVSLLLELVGSNVTMLAKEMDKLTLY 192

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT   V +++  +    +  +    ++  I  A+++ D     +     LL   
Sbjct: 193 VGIGGEITTGLVVELVPKSVEQNVFALTEKVVKKDIAGAMLILDGLFTQQEEPIKLLALL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+LL +   +KE     + +    +   + P +  +     + ++   +++ + ++ 
Sbjct: 253 VSQFRLLYQ---VKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVILELA 309

Query: 315 HRIHLARKKKYLEKNIIFQTIL 336
              + + K   ++K ++ +  L
Sbjct: 310 EADY-SMKTGKMDKKLVLEFFL 330


>gi|172036586|ref|YP_001803087.1| DNA polymerase III subunit delta [Cyanothece sp. ATCC 51142]
 gi|171698040|gb|ACB51021.1| putative DNA polymerase III, delta subunit [Cyanothece sp. ATCC
           51142]
          Length = 330

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 126/315 (40%), Gaps = 18/315 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           L+  ++ F+G D   I + +   + +I       F+   +   +    I      +    
Sbjct: 3   LTMGIYFFWGEDDFAIAQTVQTLRNSILDPNWIQFNYHQIAGEDPNSTIDALNQAMT--P 60

Query: 79  LFS-KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIA 131
           +F    +++ + N S      + +L  L+ I+     +  ++  +++ K +  L+  K+ 
Sbjct: 61  VFGMGGRLVWVVNTSICQQCSEDILTQLQRILPAIPDSSHLLFTTSK-KPDKRLKSTKLI 119

Query: 132 EKFTSVLA---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           E++  V     I  +  ++  L+  +++        ++  A ++L +++G +     NEL
Sbjct: 120 EQYAEVREYSPIPPWKTDE--LIHKVKQVAQEIGVKLTPNAVKLLGSSVGNNSRQLWNEL 177

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KL  Y  ++    ++ +   + + +     ++  A  +G    A+ L D  L+   P+ 
Sbjct: 178 EKLQLYAQQENKPLDETIVATLVNANAQNSLQLAEAICKGNQAEALQLIDELLSRNEPAL 237

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++   + +F+    I +  E      + I +  +    P +   L++ L+  +   +  
Sbjct: 238 RIVATLVGQFRTWTIIQLQLEAGETDNKIIAKAADIP-NPKRLYFLRKELQGISSQSLLA 296

Query: 309 TLHKIDHRIHLARKK 323
           TL  +       R K
Sbjct: 297 TLPILLD--LETRLK 309


>gi|325917116|ref|ZP_08179349.1| DNA polymerase III, delta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536692|gb|EGD08455.1| DNA polymerase III, delta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 342

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 100/287 (34%), Gaps = 10/287 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G +   + E  +  +            +   +  E   + +      N+ SLFS
Sbjct: 18  PAYLIAGPETLRVLEAADAVRGRARAEGIGEREVFDADGREF--DWNQLDASFNAPSLFS 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + +         + +++I +N+  K +   K AE    +  
Sbjct: 76  PRRLVEVRLPSGKPGKDGAEVITRFCANPPPDVVLLITANDWSKAHQ-GKWAEAIGRIGT 134

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           I+  +      L D IE  L          A Q L   + G+ +A+  E+ KL+    + 
Sbjct: 135 IALAWAIKPHELSDWIERRLRARGLRADAAAVQRLAERVEGNLLAAAQEIDKLALLA-DG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  +   T  G+    I +     A      AL+   +++ 
Sbjct: 194 KTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRMLAGLRAEGEAVAALMPILIKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
                +    + +  +    ++     +   ++   + +L+   +  
Sbjct: 254 LRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKRALQRHPEPR 297


>gi|149911112|ref|ZP_01899739.1| DNA polymerase III subunit delta [Moritella sp. PE36]
 gi|149805862|gb|EDM65851.1| DNA polymerase III subunit delta [Moritella sp. PE36]
          Length = 345

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 109/307 (35%), Gaps = 18/307 (5%)

Query: 22  FVFIFYGSDKGLIFELINQF---KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
             ++ +G +  L  E I+Q     K +    H  F    L       +    +N   S S
Sbjct: 18  PCYLIFGEEPLLKMEAIDQIKAAAKKVGFDEHHKFHAEPL------MDWPAVFNTCQSMS 71

Query: 79  LFSKKKII-LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-TS 136
           LFS ++ + LI      K+ +  L ++      + I+I+    + K     K   ++  +
Sbjct: 72  LFSSRQTVELIFEKRPAKEDISQLNDVFKLLNPDLILILSGPYLTKAQQNAKWFTQYFKN 131

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            L I           + +   L         +   +L  +  G+ +A++ E+ KLS    
Sbjct: 132 ALYIPVGHPEGRFFANWMRNRLKRANLEPQADVITLLCRSFEGNLLAAQQEIDKLSL-LY 190

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               ++   ++  I         ++++A + GK+     +     A  +    +     +
Sbjct: 191 PGQTLSLAQLQQSITQHSHFTSFQLVDALLAGKVNRGQRILQQLQAEGVDPIVINWALNK 250

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKI 313
           +   L   + + +   +S    ++K    +   ++ I+   L   + + + + L     +
Sbjct: 251 EINQL-YHYSLMQQQGLSVIDEMKKQR--LWAGRQQIINACLSRLSLSKIEQMLILCSSV 307

Query: 314 DHRIHLA 320
           D  I  +
Sbjct: 308 DSAIKTS 314


>gi|241889749|ref|ZP_04777047.1| DNA polymerase III, delta subunit [Gemella haemolysans ATCC 10379]
 gi|241863371|gb|EER67755.1| DNA polymerase III, delta subunit [Gemella haemolysans ATCC 10379]
          Length = 326

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 121/299 (40%), Gaps = 18/299 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +   I +      K       D F+ + +N  E    + +   E  S+ LF 
Sbjct: 3   NVYVIYGENFEAINDYEKSIAKKYLKDL-DEFNYIKINMHE--NTLESLVYECRSSGLFG 59

Query: 82  KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            +K+++ EN    L+  KK+     +D L   +       ++I+K +E K ++  +K+ +
Sbjct: 60  NEKVVVAENCNFLLAKPKKIKVEHNVDTLISYLDNISEEVVLILKISE-KIDSR-KKLIK 117

Query: 133 KFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           K   V  +  + + ++  +   I +++      IS++  + L+     D    + EL+KL
Sbjct: 118 KIKEVGEVKEFSNFDEKEIASYIVKTVAEANLKISRDDAEFLVNYTRLDFANIKKELEKL 177

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             YC E  +I  + ++ +   +    +  + N           ++ +  +  K     LL
Sbjct: 178 LLYCEEKKVIAREDIELLATRSLEYDVFSLTNELFGKNYSKLRVVYNSLVLKKEEPIFLL 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                    L   + +K   N  + +     E  + P +  +  + +R ++ + + +TL
Sbjct: 238 SLISG---QLRIYYKVKVLLNEHYSQKDIARELGVHPYRVQLAAQGIRNYSVDKIMKTL 293


>gi|261212001|ref|ZP_05926287.1| DNA polymerase III delta subunit [Vibrio sp. RC341]
 gi|260838609|gb|EEX65260.1| DNA polymerase III delta subunit [Vibrio sp. RC341]
          Length = 342

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 110/304 (36%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++ +G++  LI E     +K         F      + +   + S+ ++   + SLF
Sbjct: 17  YPIYLVFGNEPLLIQEAKTAIEKAAQTQG---FLEKHRFSADAGLDWSSVYDCCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++I IE        +    L  +  +   + I+++   ++ K        +      
Sbjct: 74  SSRQLIEIEIPESGINAQTAKELSSLSGQLHQDIILLVIGPKLTKAQENAAWLKTLAQQA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C       L   +++   +       EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLTPELSRLPQFVQQRCFLLGLKPDAEAVQMLAQWHEGNLFALAQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +       ++A ++GK   A  +    +  +     L+    ++
Sbjct: 193 DGQLTLVRLEESLSRHNHFTPYHWMDALLEGKANRAQRILRQLMLEESEPIILIRTAQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K    ++    +   +  +    +   +R +   +L+     ++   +  +    
Sbjct: 253 LTQLLKWQQERQ-QTATLGHLFDRYR--VWQNRRPLYSAALQRLPMVMLSRLIGLLTQAE 309

Query: 318 HLAR 321
            LA+
Sbjct: 310 LLAK 313


>gi|54310012|ref|YP_131032.1| DNA polymerase III subunit delta [Photobacterium profundum SS9]
 gi|46914451|emb|CAG21230.1| hypothetical DNA polymerase III, delta subunit [Photobacterium
           profundum SS9]
          Length = 343

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 107/296 (36%), Gaps = 10/296 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              F+ +G++  +  E  +Q K+              ++    Q + +   N   + SLF
Sbjct: 17  RQAFLLFGNEPLIKQECADQIKQCAQQAGFHERHAFTIDN---QLDWNEVLNCCQAMSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           S ++II +E        K    L E+      + +++++   + K     K  +    + 
Sbjct: 74  SAQQIIELEVPESGLNAKQAKALIEVTNHLNDDTLLLLQGPRLNKKQESAKWFKAFDNNS 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L I C   +  HL   I+      +     E+  +L     G+ +A    LQKL+     
Sbjct: 134 LYIPCNTPDTRHLPRFIQARCQQLKLKPDHESVVLLAQWHEGNLLALAQSLQKLTL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +     ++++A + G+   +  +        + +  LL    ++
Sbjct: 193 DGELTVPRLQESLSRHNHYTPFQLLDAVLAGQAKRSQRVLRQLQGEGIEATILLRTLQRE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              L K+             I ++    I   +R +   +L       + + L ++
Sbjct: 253 LTQLYKMQ-EMGMKGTPLNNIFEQYR--IWQSRREVYIGALHRLPLTTLIQLLQRL 305


>gi|28211662|ref|NP_782606.1| DNA polymerase III subunit delta [Clostridium tetani E88]
 gi|28204104|gb|AAO36543.1| DNA polymerase III, delta subunit [Clostridium tetani E88]
          Length = 344

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 119/314 (37%), Gaps = 19/314 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISIT--YHDPF---SLVVLNALEIQKNISTFWNEINSTS 78
           +IFYGSD+ +I E I+  K  +      ++ F   +    +   ++ N     N   +  
Sbjct: 20  YIFYGSDEDMIKENISLIKNKLIKDKLINEDFIDLNFAKFDGNTLE-NFDEVINACETLP 78

Query: 79  LFSKKKIILIENLS------TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR-KIA 131
             S KKI+LI   +        + V    ++ +     N ++++     +K   +  K+ 
Sbjct: 79  FMSSKKIVLIYRANFLGKNKKSEGVYSAFKKYLENIPENTVLVLYYIFKEKRERVENKVL 138

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +       I         L   +++      K I+    ++  +NL  +      E++KL
Sbjct: 139 KLNKKCDIIEIKDLKGRDLEKKVKDLFEEKGKKIALVELKLFCSNLPNNMGIIEKEVEKL 198

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             Y LE   IT+Q + D+        I  +++     ++  AI   +  L        +L
Sbjct: 199 CCYTLERD-ITKQDIYDMFPAKQEDDIFVLVDKMGDKRVKEAIDRFNELLHIGESIFNIL 257

Query: 252 HGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +   ++F L+ +    +KE    + E+I +        +   ++ +S + + +  ++  +
Sbjct: 258 YMIERQFNLIYQVSRYVKE--GKTIEEISRIIRLP-NFICTKLVGQS-KKFTETQIKNAM 313

Query: 311 HKIDHRIHLARKKK 324
            +      + +   
Sbjct: 314 ERCLETEKVLKSTS 327


>gi|73748002|ref|YP_307241.1| DNA polymerase III delta subunit-related protein [Dehalococcoides
           sp. CBDB1]
 gi|73659718|emb|CAI82325.1| DNA polymerase III delta subunit-related protein [Dehalococcoides
           sp. CBDB1]
          Length = 344

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 124/344 (36%), Gaps = 42/344 (12%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + ++IF GSD   + E + Q K+ +        +  +L A  +    +   N + +    
Sbjct: 2   NLLYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFL 59

Query: 81  SKKKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +  +++++  L               +  K   D     +       + ++      K+ 
Sbjct: 60  APARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDG 119

Query: 126 TLRKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQI 172
             R+  EK +++     +             P +  +L   + +        +S  A ++
Sbjct: 120 DYREK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARL 178

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L    G D  A   E++KL  Y     +I E  V+ ++     + I  +++A +  K+  
Sbjct: 179 LGRLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKE 237

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMK 290
           A      F A       LL   +++ +L+ +   +K+      E  K++  +E  +    
Sbjct: 238 AQQSLAAFTAGGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL---- 293

Query: 291 RNILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331
           R    +++   N + ++    K+      I   R +  L  +++
Sbjct: 294 RKTASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 336


>gi|225154901|ref|ZP_03723399.1| DNA polymerase III, delta subunit [Opitutaceae bacterium TAV2]
 gi|224804431|gb|EEG22656.1| DNA polymerase III, delta subunit [Opitutaceae bacterium TAV2]
          Length = 401

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 104/312 (33%), Gaps = 49/312 (15%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNIST 69
            +   +       GSD  L+        + ++    D FS  V++       E+   I+ 
Sbjct: 2   SDSQSAKPFVFVCGSDDFLVSRAGKARYEELAKGVDDEFSREVISGFANNGGEVSDAINR 61

Query: 70  FWNEINSTSLFSKKKIILIEN-----------LSTEKKVLDCLEEIIIK-NICNHIIIIK 117
           F   + + S+F  ++++  ++                ++++ L++I+   N     +++ 
Sbjct: 62  FRESVQTISMFGGRRVVWFKDVNFLADSVTGRAEGTLRLVEDLQQILGSLNPAEVSVVVS 121

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLAN 176
           +  + +     K  EK      I    +     L  ++         +  + A Q+L+A 
Sbjct: 122 AAPVDRRRAFPKWCEKTADFTLIGGEGEGASDALAGVVLTEAQALGATFGEGALQMLVAR 181

Query: 177 LGGDRIASRNELQKLSSY-------------------------------CLEDILITEQH 205
           +G +      E++KL++Y                                   ++I E H
Sbjct: 182 IGSNTRLLIEEVRKLATYASSSGETTTAGGGGGMGGVVTDAGGGFGDGSARRPVVIEEAH 241

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V++I  +       E   A   G +   +        +   S  +L     + ++L ++ 
Sbjct: 242 VEEITPNVAEGDFFETAEAFFAGNLKWTLEALHRHFYAGGHSRPVLSALQNRNRILIQVR 301

Query: 266 IIKECSNISFEK 277
            + +  ++    
Sbjct: 302 ALMDAGDVRAGG 313


>gi|310659109|ref|YP_003936830.1| hypothetical protein CLOST_1805 [Clostridium sticklandii DSM 519]
 gi|308825887|emb|CBH21925.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 353

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 97/273 (35%), Gaps = 36/273 (13%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +   I  +++ FK  +   + D F+L V++   I  +I        S     
Sbjct: 16  KVYLIYGEEAYRIDSILDYFKNKLEPAFRD-FNLTVIDDKVI--DIDRIIENFESVPFMD 72

Query: 82  KKKIILIENLSTEKKVLDCLEE--------IIIKNICNHIIIIKSNEIKKNNTLRK---- 129
           K +I++I++ +  K     L +         +       I++    E+ K ++L K    
Sbjct: 73  KNRIVVIKSSAFFKTGTKGLAKEDEKKLLAYLENPAETTIVLFCPPEVDKRSSLFKQLKK 132

Query: 130 ---IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------G 179
              I E                 L    +  L      IS    +  +   G        
Sbjct: 133 NHCIFEANKL---------EMNELKLWCKAVLKKSNTIISDLELESFIEKTGYYYKESGK 183

Query: 180 DRIASRNELQKL-SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           +     NEL K+ + Y  +   IT Q +  +I       I  +I  T  G    A++  +
Sbjct: 184 NLRDLENELVKISALY-QKQGKITIQDIDLVILQNFENNIFRLIEDTFSGDFKKALIEFN 242

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
             + S   +  +L  F ++  ++ K HI+K   
Sbjct: 243 HIIDSGESALMILTMFGKQLSMITKYHILKAKG 275


>gi|326791212|ref|YP_004309033.1| DNA polymerase III subunit delta [Clostridium lentocellum DSM 5427]
 gi|326541976|gb|ADZ83835.1| DNA polymerase III, delta subunit [Clostridium lentocellum DSM
           5427]
          Length = 319

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 127/319 (39%), Gaps = 17/319 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G D     + I + KK +  + ++  +       E+   +S   + +++   F+++
Sbjct: 6   YLLLGEDSWSKGQYIEKVKKEVIASGNEMMNFYEAQDKEVI--VSQVQDAVDTLPFFAEQ 63

Query: 84  KIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           K+IL++        +K+  +  E ++       +++I   E+ K N L K  +    ++ 
Sbjct: 64  KLILLKETGLFKTGKKEETEKFETLVAHIPDYVVLLIDEKEVDKRNKLYKTIKAKAQIVE 123

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                +    +   ++ +    + S  +   +  +  +  D      E +KL SY  +D 
Sbjct: 124 FHFPGEEA--VYQFLKNTCKEKRLSSDEMTLRYFIQKMPQDMAYLLGEWEKLISYV-QDG 180

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +IT++ + +I   +    + E++   +  +   A+ +    + SK     +L    ++F+
Sbjct: 181 VITKEAINEICIFSLETRVFEMVKKIVNHEGNEALEIYSRMIQSKESPIGILVLIARQFR 240

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ--ESLRIWNKNLVRETLHKIDHRI 317
           ++ ++  +   +N S  K I    K    + + + +  +  +      + E     D  I
Sbjct: 241 MMYQVKYLL--ANRSPLKEISAETKLPFFVVKEMSEQVQHYQFKQLEDILEACLNTDEAI 298

Query: 318 HLARKKKYLEKNIIFQTIL 336
               K   +E +   + ++
Sbjct: 299 ----KTGKMESSKCVEMLI 313


>gi|253998284|ref|YP_003050347.1| DNA polymerase III subunit delta [Methylovorus sp. SIP3-4]
 gi|313200357|ref|YP_004039015.1| DNA polymerase III subunit delta [Methylovorus sp. MP688]
 gi|253984963|gb|ACT49820.1| DNA polymerase III, delta subunit [Methylovorus sp. SIP3-4]
 gi|312439673|gb|ADQ83779.1| DNA polymerase III, delta subunit [Methylovorus sp. MP688]
          Length = 342

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 121/333 (36%), Gaps = 17/333 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +     E ++  +        D  + + +      + I+ F     S SLF+
Sbjct: 18  PIYVLTGDEPLAQRECLDAIRAKARALGFDERTSLTVERNFNWQQIAAFG---QSISLFA 74

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL- 138
            ++I+   I +          L+ +  K + + + II   ++ ++           +   
Sbjct: 75  SQRILELHIPSGKPGTDGGKALQAMAAKPLPDAVTIIILPKLDRDGKNSAWYGALENAAV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ++        L   I   L + Q+   +   + L   + G+ +A+  E+QKL       
Sbjct: 135 TLTLQEVEAAQLPQWIARRLAMQQQETDQATLEFLAHQVEGNLLAAHQEIQKLGL-LYPA 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + V+D + +       ++  A + G     + +        +   A+++  L   
Sbjct: 194 GPLAAEAVRDAVLNVSRYDAFQLGEAVLAGDTERTVRILQGLRDEGVQPIAVMNPLLWVL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L ++    E    +  + +Q+    I   ++ + + +L   +   ++  LHK+     
Sbjct: 254 RPLVRVK-EAETRGENLNQAMQQAR--IYGDRQALTRRALARLSLRQLQAALHKLAEIDK 310

Query: 319 LA----RKKKYLEKNIIFQTILYIAQTACKNNN 347
            A    R+  +LE   I +    +A+ + +   
Sbjct: 311 TAKGLIRQDAWLE---ISRLCFGLAKVSSRAAR 340


>gi|210623836|ref|ZP_03294085.1| hypothetical protein CLOHIR_02036 [Clostridium hiranonis DSM 13275]
 gi|210153331|gb|EEA84337.1| hypothetical protein CLOHIR_02036 [Clostridium hiranonis DSM 13275]
          Length = 343

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 120/332 (36%), Gaps = 25/332 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG +  LI   I   K  ++ +  D F+  V++  E+Q +     + I +     
Sbjct: 17  RVYLFYGKEYYLIENSIKMLKSGLNESMLD-FNFDVIDGKEVQLD--QLLSSIETFPFMD 73

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAE 132
           ++K++++++       +K   D  E+  I+          +  I   +I K  ++ K   
Sbjct: 74  ERKVVIVKDFELFNGNKKNFTDADEKYFIERLDNIPDTTVLAFIVYGDIDKRKSIYKKVN 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-----GDRIAS--R 185
           K  +V    C   + + L   ++        +         +  LG      D   +  +
Sbjct: 134 KVGTVC--ECKKLDGMDLFKWVKREFSRLDVNAENATIAYFIEQLGYRDKNSDMTLTDVK 191

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ K+ SY      +T + V  +        +  +I+         A+ +    +    
Sbjct: 192 NEIFKMGSYAGSGSTLTNEIVDKLSPRKVENNVFRMIDNIGMKNASVAMKIFKDMVFDGE 251

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           P   ++    ++F+++  +    +  N+  ++I          +K     +    ++ + 
Sbjct: 252 PVLRIMSLISRQFRIILNVK-DMQKENMKIKEIATTLGVQEFVVKNAA--KQGTNFSDDK 308

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
           + E ++ I    +   K   +      + ++ 
Sbjct: 309 LTEIMNYILESEYRI-KNGLIGDEAAIEILIG 339


>gi|27468191|ref|NP_764828.1| DNA polymerase III subunit delta [Staphylococcus epidermidis ATCC
           12228]
 gi|27315737|gb|AAO04872.1|AE016748_106 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|329737162|gb|EGG73416.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           VCU028]
          Length = 324

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 118/343 (34%), Gaps = 42/343 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +F  YG    L+ +   +   +      D F+ V  N  E          E  +  
Sbjct: 1   MSNNIFTVYGEVPELVEKKTKEIVNDYLGQKIDDFNYVKYNLYESDLTP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKS--NEIKKN--- 124
            FS KK I+++N    + EK         D L + + K    ++II +    ++ +    
Sbjct: 59  FFSNKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQPKLDERKKL 118

Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
                    L+KI +              +  L   I+ +L    K I ++A ++ +   
Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +      EL+KL  +  E  +I +  +  II  +    +  +     +G    AI L 
Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKDDIDLIINRSLEQNVFLLTEYIQKGNKNKAIQLV 226

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295
           +  +  K     LL      ++L  +  I+ +         K +        P +  +  
Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              R +    +   ++      +  +     ++ I+   IL +
Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324


>gi|289431999|ref|YP_003461872.1| DNA polymerase III subunit delta [Dehalococcoides sp. GT]
 gi|288945719|gb|ADC73416.1| DNA polymerase III, delta subunit [Dehalococcoides sp. GT]
          Length = 342

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 123/342 (35%), Gaps = 42/342 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++IF GSD   + E + Q K+ +        +  +L A  +    +   N + +    + 
Sbjct: 2   LYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFLAP 59

Query: 83  KKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
            +++++  L               +  K   D     +       + ++      K+   
Sbjct: 60  ARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDGDY 119

Query: 128 RKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
           R+  EK +++     +             P +  +L   + +        +S  A ++L 
Sbjct: 120 REK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARLLG 178

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
              G D  A   E++KL  Y     +I E  V+ ++     + I  +++A +  K+  A 
Sbjct: 179 RLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKEAQ 237

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMKRN 292
                F A       LL   +++ +L+ +   +K+      E  K++  +E  +    R 
Sbjct: 238 QSLAAFTAGGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL----RK 293

Query: 293 ILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331
              +++   N + ++    K+      I   R +  L  +++
Sbjct: 294 TASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 334


>gi|319400923|gb|EFV89142.1| DNA polymerase III, delta subunit [Staphylococcus epidermidis
           FRI909]
          Length = 324

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 42/343 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +F  YG    L+ +   +   +      D F+ V  N  E          E  +  
Sbjct: 1   MSNNIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKN----- 124
            FS KK I+++N    + EK         D L + + K    ++II +  + K +     
Sbjct: 59  FFSDKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQSKLDERKKL 118

Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
                    L+KI +              +  L   I+ +L    K I ++A ++ +   
Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +      EL+KL  +  E  +I ++ +  II  +    +  +     +GK   AI L 
Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGKKNKAIQLV 226

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295
           +  +  K     LL      ++L  +  I+ +         K +        P +  +  
Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              R +    +   ++      +  +     ++ I+   IL +
Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324


>gi|227538078|ref|ZP_03968127.1| DNA polymerase III subunit delta [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242154|gb|EEI92169.1| DNA polymerase III subunit delta [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 334

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 114/328 (34%), Gaps = 23/328 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +   I  + +  + ++       F   +L   +   +  T  N      + S
Sbjct: 17  PVYLLHGEEPYFIDLISDTIESSVLDDAQKGFDQTILYGKDT--DFITIVNAAKRYPMLS 74

Query: 82  KKKIILIENLSTEK--KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSV 137
             ++ILI+     K  +  + L   +     + +++      +  K   L K  EK   V
Sbjct: 75  DHQVILIKEAQDLKWKQGEELLLNYVEHLTPSTVLVFNYKYGKFDKRKKLYKAIEKAGEV 134

Query: 138 L-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           + +   Y D    +   I   +     SI  +A  ++   LG D     NEL KL     
Sbjct: 135 VESNKLYED---KVAGWITSYVKDRGWSIHPQAAAMMAEYLGTDLSKVSNELDKLMLNVP 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254
           +   I    ++  I  +    + E+  A  +     A  + D+F A+    P   +L   
Sbjct: 192 KSTEIGAGDIERNIGISKDFNVFELNTALAKRNALKAYQIVDYFAANPKNNPLVVVLGAM 251

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              F  + K H + + S  + E  +          +    + + R +N+    + ++ + 
Sbjct: 252 GGYFTKVLKYHYLPDKSAAAKELGVH----PFFIKE---YEIAARNYNRRKTFDIINHLK 304

Query: 315 HRIHLARKKKYLE----KNIIFQTILYI 338
                ++           +I+ + I  I
Sbjct: 305 EADLKSKGMNVGSNTGTDDILREMIFNI 332


>gi|289578092|ref|YP_003476719.1| DNA polymerase III subunit delta [Thermoanaerobacter italicus Ab9]
 gi|289527805|gb|ADD02157.1| DNA polymerase III, delta subunit [Thermoanaerobacter italicus Ab9]
          Length = 338

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++FYG ++ L+ + I +FK  +        + +V+   + ++ ++       +   F
Sbjct: 16  HNLYLFYGEERYLLLDAIKKFKSKLLKEETYEMNYIVIEKNDPEEYVNAIIESCETLPFF 75

Query: 81  SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKI 130
           S+ K++L++N   +         KK+++ +EE         ++II   E I       K+
Sbjct: 76  SEYKLVLVKNEEDQLSRLNDKSLKKLMNYIEEKTNMPENKTVLIIVGGEKIDLRKKFNKL 135

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            EK   ++        +   ++      +   K I+K   + L+ ++G D  A  NE+ K
Sbjct: 136 VEKIGKIVYFQKLSFEEA--VNYTGYFFVKSGKKITKADAEYLVKSVGTDLYAIVNEIHK 193

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +  Y  +   I  + +K+++       I  +++A  + K   A  +    L        +
Sbjct: 194 VICYS-DSEKIEMEKMKEVLSINLQQNIFNLVSAIGRKKEKEAYKVLYALLEKGEVPLII 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L   +++ +L+ KI    E   +    I          ++   L    +++ K  +   
Sbjct: 253 LSMIIRQMRLIAKIKT-FEGKFVDKRSIASSLGVPYFVVEE--LTRQSKLFKKEDLERA 308


>gi|297537780|ref|YP_003673549.1| DNA polymerase III subunit delta [Methylotenera sp. 301]
 gi|297257127|gb|ADI28972.1| DNA polymerase III, delta subunit [Methylotenera sp. 301]
          Length = 341

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 116/304 (38%), Gaps = 12/304 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +     E ++  +       +D  + + +      + I ++     S SLF+
Sbjct: 18  PLYILVGDEPLAQRESLDAIRAAARAQGYDERTTLTVERYFNWQQIQSYG---QSISLFA 74

Query: 82  KKKIILIENLSTEKKVLD---CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
            ++++ I N+ + K  +D    L+ +  K I +  ++I   +++++            + 
Sbjct: 75  SQRLLEI-NIPSGKPGVDGGKALQALAAKAIPDTCVVIILPKLERDAANSAWFSALEKNA 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + I     +  +L   I   L +  +  S++  + L   + G+ +A+  E+QKL      
Sbjct: 134 ITIQLNEVDAANLPKWIASRLALQGQHTSQQTLEFLAHQVEGNLLAANQEVQKLGL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +++  V++ + +       ++  A + G     + +          + A++   +  
Sbjct: 193 QGELSDATVREAVLNVSRYDAFQLGEAVLAGDAARTVRILQGLQDEGENAVAVMSPLMWV 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + L +I    E    +    +      I   K+ +++ +L   N   +   L K+    
Sbjct: 253 LRPLVRIK-QAEMRGENIMNAMTNAR--IYGEKQALVKRALARLNLKQLEAALQKLADID 309

Query: 318 HLAR 321
             A+
Sbjct: 310 KTAK 313


>gi|239637602|ref|ZP_04678574.1| DNA polymerase III, delta subunit [Staphylococcus warneri L37603]
 gi|239596820|gb|EEQ79345.1| DNA polymerase III, delta subunit [Staphylococcus warneri L37603]
          Length = 324

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 120/333 (36%), Gaps = 22/333 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +  ++       T  D F+ +  N  E +        E  +  
Sbjct: 1   MSDNIVTVYGEVADLVEKKSSEIINKYLQTEKDDFNFIKFNLYETEITP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEK------KVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTL 127
            FS KK IL++N    + EK      +  D L E + K   +++II +   N++ +   L
Sbjct: 59  FFSDKKAILVKNAYVFTGEKVTKELNQNTDQLMEFLEKYDGDNLIIFEVYQNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   +  +    + +  +   I+  L    K I ++A  + +   G +      E
Sbjct: 119 TKTLKKNGQLKKVEQMSEEE--IKKWIQSKLNENFKDIKQDALNMFIELTGVNFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L KL  +  +   I +  V  II  +    +  +     + +   AI L    +  K   
Sbjct: 177 LDKLMLFLGDRPTINKDDVNQIINRSLEQNVFLLTEYIQKRQKNKAIQLVKDLINMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
             LL      ++L  +  I+ +         K +      + P +  +    +R +    
Sbjct: 237 IKLLALVTSNYRLYYQCKILSQKGYSGQQIAKTVN-----VHPYRVKLALGQVRHYQLED 291

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           +  T+       +  +     ++ I+   IL +
Sbjct: 292 LLNTIDSCAETDYKLKSSYMDKQLILELFILSL 324


>gi|259503081|ref|ZP_05745983.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus antri
           DSM 16041]
 gi|259168947|gb|EEW53442.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus antri
           DSM 16041]
          Length = 340

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 111/279 (39%), Gaps = 16/279 (5%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNIC 110
            +E+    S   + +++   F +++++++     L+ EK+       L  L + +     
Sbjct: 53  DMEVTPLASALADAVSA-PFFGERRLVVVNKPYFLTNEKRGGKIEHDLAALTKYLQHPEP 111

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
              ++  +   K +   + + E     + +S  P ++      +E  L     +I   A 
Sbjct: 112 TTTLVFSAPYEKLDGRKKLVKELKKVAVNVSAAPLDERSARQQVESGLHQDGFTIDDAAL 171

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           + L+     D       + KL     ++  IT + V++++  +    + +++ A ++   
Sbjct: 172 ETLVQRTNADYGLMVANVAKLKILAYQNKQITARMVEELVPQSLDDNVFDLVTAVLRRDQ 231

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             ++ L    LAS+     +    + +F+LL ++ ++     +S   I  K   N+ P +
Sbjct: 232 PRSLALYQQLLASQKQPLQINAVLVSQFRLLIQLKVLV-KHGLSQGSIASKL--NVHPYR 288

Query: 291 RNILQESLRIWNKNLVRET---LHKIDHRIHLARKKKYL 326
             +   ++R ++   +      L KI+  +   ++   L
Sbjct: 289 VKLGLRTVRQFSLERLANAYLGLVKIERTLKTTQRDPEL 327


>gi|218513713|ref|ZP_03510553.1| DNA polymerase III subunit delta [Rhizobium etli 8C-3]
          Length = 71

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 1  MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
          MA I+SH+F   +QKS +N    + +F+ YG D+GL+ E   Q      +   DPFSL  
Sbjct: 1  MAEIKSHEFETFLQKSVRN----YRIFVIYGPDRGLVSERAGQLAGKTGVALDDPFSLTK 56

Query: 58 LNALEIQKNISTFWN 72
          L+  ++QK+     +
Sbjct: 57 LDIADLQKDPGRLVD 71


>gi|317495075|ref|ZP_07953447.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914847|gb|EFV36321.1| DNA polymerase III [Gemella moribillum M424]
          Length = 326

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 121/299 (40%), Gaps = 18/299 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YG +   + +   +  +N      D F+ V +N  +    + T   E  S+ LF 
Sbjct: 3   NVYVIYGENFEAVNDYEKEITRNYVKEV-DEFNRVKINMND--HTLETLVYECRSSGLFG 59

Query: 82  KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            +K+++ EN    L+  KK+     +D L + +       I+I+K++E K ++  +KI +
Sbjct: 60  NEKVVVAENCNFLLAKPKKLKVEHNVDVLTKYLENINDEVILILKNSE-KIDSR-KKIVK 117

Query: 133 KFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +   +  +  + +  +  L+D I + +      ISK   Q L+     D    + EL+KL
Sbjct: 118 QLKEIGEVKEFSNFKEHQLIDYIVKQVGELGLEISKADAQFLVDYTQLDLANIKKELEKL 177

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             YC E   I+++ ++ +   +    +  + N            + +  +  +     LL
Sbjct: 178 VLYCGEIGRISKKDIELLCTRSLDYDVFSLTNELFGKNYKKLREVYNSLVLKREEPIFLL 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                    L   + +K   N  + +     E  I P +  +  + +  ++   +  ++
Sbjct: 238 SLISG---QLRLYYKVKVFLNEHYSQKEIAKELGIHPYRVQLAAQMVSHYDLEKIMRSM 293


>gi|303252872|ref|ZP_07339031.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247862|ref|ZP_07529898.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648302|gb|EFL78499.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855664|gb|EFM87831.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 341

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 110/313 (35%), Gaps = 18/313 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  LI E  +   +   +   D    V +            +    S  LF 
Sbjct: 19  PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136
            ++II++    +     +  + E+   +  + ++I+     S  ++K     +I      
Sbjct: 76  NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C       L   I       +  I  EA Q+L  +  G+ +A +  LQ L     
Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+    K+++  +      + I+A ++GKI  A  +       ++    LL    +
Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251

Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310
           +   LLE     +   N +    +           +   +R   Q +++      + + +
Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311

Query: 311 HKIDHRIHLARKK 323
            ++       +++
Sbjct: 312 QRLAELEKQVKQE 324


>gi|307130048|ref|YP_003882064.1| DNA polymerase III, subunit delta [Dickeya dadantii 3937]
 gi|306527577|gb|ADM97507.1| DNA polymerase III, delta subunit [Dickeya dadantii 3937]
          Length = 343

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 112/309 (36%), Gaps = 17/309 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L+ E    I    +      H  F+L      +   +    ++   + 
Sbjct: 18  RGCYLLFGNEPLLLQESQDQIRTIARQQDFLEHFSFTL------DNNTDWDAIFSTCQAL 71

Query: 78  SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134
           SLF+ ++  ++++ +        + L ++      + +++++ N++ K        +   
Sbjct: 72  SLFASRQTLLLILPDAGPGAPGGEQLVKLSTLLHPDILLMVRGNKLTKAQENSSWFKALS 131

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + + C    +  L   +       +  +   A Q++     G+ +A    L++LS  
Sbjct: 132 QQGVYVPCMTPEQEQLPRWVAHRAKNMKLELDDAASQLICYCYEGNLLALVQALERLSL- 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   V+  + D         ++A + GK   A  +       +     LL   
Sbjct: 191 LYPDGKLTLPRVEQAVNDAAHFTPFHWLDALLGGKSKRAWHILQQLRLEECEPVILLRTV 250

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++  LL ++             ++ + +  +   +R +L ++L+  +   +++ +  + 
Sbjct: 251 QRELLLLLQLKRRMAT--TPLRTLLDQHK--VWQNRRPLLTQALQRLSLTQLQQAITLLS 306

Query: 315 HRIHLARKK 323
                 ++ 
Sbjct: 307 RLEITLKQN 315


>gi|262274727|ref|ZP_06052538.1| DNA polymerase III delta subunit [Grimontia hollisae CIP 101886]
 gi|262221290|gb|EEY72604.1| DNA polymerase III delta subunit [Grimontia hollisae CIP 101886]
          Length = 340

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 106/304 (34%), Gaps = 10/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  ++ +G++  L  E              D     V++     ++    ++   + SLF
Sbjct: 17  YQTYLIFGNEPLLKEESKQAIIDTAQKQGFDEKHRFVVDNQLNWQD---VYDVCQALSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + +++I++   +        + L+E+      + ++I+    + K             + 
Sbjct: 74  ASRQVIILTLPDNPLTTSQANALKELQRLLHPDLVLILDGPRLNKKQESATWFTAFQQTG 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L + C   +   L   IE            E+  +L     G+ +A    L KL      
Sbjct: 134 LYVPCNTPDSRQLPHFIENRCHRLGLHPDHESVMLLAQWHEGNLLALSQSLMKLQL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   +++ +   +     ++ +A ++GK   A+ +     A  +    LL    ++
Sbjct: 193 DGELTLLRLQEALSRHNHYTPFQLTDALVEGKAKRAVRILRQLEAEGVEITLLLRVIQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L K+      S +   KI       +   +R ++  +L    +  +   L ++    
Sbjct: 253 LVQLCKMQ-EFGASGMGLGKIFDHFR--VWQARRPVMTAALHRLTQPTLMHLLQRLAEIE 309

Query: 318 HLAR 321
            + +
Sbjct: 310 VMVK 313


>gi|317491128|ref|ZP_07949564.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920675|gb|EFV41998.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 344

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E ++  ++         +    L+A     +  + ++   + SLF+ +
Sbjct: 21  YLVMGNEPLLLQESLDLIRQQAQQQGFTEYFSFSLDAHT---DWESIFSLSQAMSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II +          + + L ++      + ++II+ N+  K        +    +   I
Sbjct: 78  QIISLTLPENGANAAIGEQLAKLATLLHSDLLLIIRGNKPTKAQENAGWFKTLSQNAAMI 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC    +  L   +          +   A Q++     G+ +A    L++LS     D  
Sbjct: 138 SCQTPEQAQLPRWVATRAKQMNLQLDDAANQLICYCYEGNLLALSQALERLSL-LYPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V++ + D         ++A + GK   A  +        M    LL    ++  L
Sbjct: 197 LTLPRVEEAVSDAAHFSPFHWVDAILAGKSKRAWHILQQLRQEDMEPVILLRTVQREVLL 256

Query: 261 LEKIHIIK 268
           L  +    
Sbjct: 257 LLTLKSQM 264


>gi|242242864|ref|ZP_04797309.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           W23144]
 gi|242233677|gb|EES35989.1| DNA polymerase III subunit delta [Staphylococcus epidermidis
           W23144]
          Length = 324

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 42/343 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S+ +F  YG    L+ +   +   +      D F+ V  N  E          E  +  
Sbjct: 1   MSNHIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTP--IIEETLTMP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKN----- 124
            FS KK I+++N    + EK         D L + + K    ++II +  + K +     
Sbjct: 59  FFSDKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQSKLDERKKL 118

Query: 125 -------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
                    L+KI +              +  L   I+ +L    K I ++A ++ +   
Sbjct: 119 TKTLKKNAQLKKIEQMS------------EKELKHWIKNTLNNNYKDIKQDALELFIELT 166

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +      EL+KL  +  E  +I ++ +  II  +    +  +     +GK   AI L 
Sbjct: 167 GVNYNIVSQELEKLILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGKKNKAIQLV 226

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNILQ 295
           +  +  K     LL      ++L  +  I+ +         K +        P +  +  
Sbjct: 227 NDLIIMKEEPIKLLALITSNYRLYYQCKILSQKGYSGQQIAKTVNA-----HPYRVKLAL 281

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              R +    +   ++      +  +     ++ I+   IL +
Sbjct: 282 NQSRHYKLESLFNIINACAETDYKLKSSYMDKQLILELFILSL 324


>gi|302389460|ref|YP_003825281.1| DNA polymerase III, delta subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200088|gb|ADL07658.1| DNA polymerase III, delta subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 336

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 115/333 (34%), Gaps = 21/333 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++FYG +K LI E I + K       ++      L+  ++  +     N      + ++
Sbjct: 4   LYLFYGQEKLLIREAIEKIKSKYVPEAYEVVDFQALDGEDVTYDE--IVNVCRVMPMLAE 61

Query: 83  KKIILIENL--------STEKKVLDC--LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           K++++I N           EK         E +        +I  + ++ K   + K   
Sbjct: 62  KRVVVIYNAVFLEEGKKKAEKSGSGEARFIEFLENIPPYLCLIFSAEKVDKRKKIYKAI- 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 A    P +    +  I+       K + + A   +      D   +  E++K  
Sbjct: 121 -QQKGAAKEFSPLSFKDKVRWIQARSAKYGKPMDQSAAVYMAQFT-ADLYHADGEIKKAV 178

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +Y  +   I ++ +  I+  +    I E+I+   +GK+  A+ + +  + S      +L 
Sbjct: 179 AYVTDKDEIEKRDLDAIMSKSTEANIFELIDYLAEGKVPAAVKILNELIYSGEKVLVILF 238

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              + F  L    +  + +     + ++          + ++ ++ + +    +   L  
Sbjct: 239 MVSRHFMNL----LAVKANEGLAFQELRNALNMHPFALKKMVLQA-KNFTTEQIINILAL 293

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
                   +K   +E+    + +L       K 
Sbjct: 294 CQQLDIDLKK-GRIEEKKGLEMLLTKIGEMRKG 325


>gi|297544365|ref|YP_003676667.1| DNA polymerase III subunit delta [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842140|gb|ADH60656.1| DNA polymerase III, delta subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 338

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 119/299 (39%), Gaps = 16/299 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++FYG ++ L+ + I +FK  +        + +V+   + ++ ++       +   F
Sbjct: 16  HNLYLFYGEERYLLLDAIKKFKSKLLKEETYEMNYIVIEKNDPEEYVNAIIESCETLPFF 75

Query: 81  SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKI 130
           S+ K++L++N   +         KK+++ +EE         ++II   E I       K+
Sbjct: 76  SEYKLVLVKNEEDQLSRLNDKSLKKLMNYIEEKTNMPENKTVLIIVGGEKIDLRKKFNKL 135

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            EK   ++        +   ++      +   K I+K   + L+ ++G D  A  NE+ K
Sbjct: 136 VEKIGKIVYFQRLSFEEA--VNYTGYFFVKSGKKITKADAEYLVKSVGTDLYAIVNEIHK 193

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +  Y  +   I  + +K+++       I  +++A  + K   A  +    L        +
Sbjct: 194 VICYS-DSEKIEMEKMKEVLSINLQQNIFNLVSAIGRKKEKEAYKVLYALLEKGEVPLII 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L   +++ +L+ KI    E   +    I          ++   L    +++ K  +   
Sbjct: 253 LSMIIRQMRLIAKIKT-FEGKFVDKRSIASSLGVPYFVVEE--LTRQSKLFKKEDLERA 308


>gi|260773269|ref|ZP_05882185.1| DNA polymerase III delta subunit [Vibrio metschnikovii CIP 69.14]
 gi|260612408|gb|EEX37611.1| DNA polymerase III delta subunit [Vibrio metschnikovii CIP 69.14]
          Length = 341

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 11/285 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G++  LI E     ++         F+       +   N +  ++   S SLFS+
Sbjct: 19  VYLILGNEPLLIQESRLAIERKAREQG---FTEKYRFNADASLNWNEVYDCCQSMSLFSQ 75

Query: 83  KKIILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           ++I+ IE         +   L  +      + +++I   ++ K        +  ++    
Sbjct: 76  RQIVEIEVAENGFNAALGKELASLTATLSPDVLLVIIGGKLAKAQENTAWFKTLSAQACW 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           ++C       L   +             EA Q+L     G+ +A    L+KL      D 
Sbjct: 136 VNCLTPELSRLPQFVATRCRALGLKPDNEAIQMLAQWHEGNLLALVQSLEKLVL-LYPDG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   +++ +   +       I+A ++GK   A  +     A       L+    ++  
Sbjct: 195 QLTLLRLEESLSRHNQFTAFHWIDALLEGKANRAQRILRQLAAEDTEVIILIRTVQKELF 254

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            L ++    E    +   +  +    I   KR +   +L+  +  
Sbjct: 255 QLLQMRQAIETQ--AIGNVFNQYR--IWQTKRPLYSAALQRLSVP 295


>gi|294788929|ref|ZP_06754169.1| DNA polymerase III, delta subunit [Simonsiella muelleri ATCC 29453]
 gi|294483031|gb|EFG30718.1| DNA polymerase III, delta subunit [Simonsiella muelleri ATCC 29453]
          Length = 332

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 7/266 (2%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ +G ++ L  E + Q +          +        + Q +    W +  S  LF
Sbjct: 15  RPIYVIHGEEELLKIEALEQIRAAAK---SRGYLKETYLVEQAQFDWQELWAQAASAGLF 71

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
              K+  I I N    K+  + +++     + +  ++I   ++ K     K         
Sbjct: 72  GDCKLLEIHIPNGKLGKQGSEMMQQFAEHPLTDTSVVIVLPKLDKTQLQSKWFAALAKHA 131

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             +         L   I   L      I  +A  +    + G+ +A++ E+ KL+     
Sbjct: 132 TILEMKAVTMAALPAWIRARLQQHDLKIDADALALFAQRVEGNLLATKQEIDKLALLYPS 191

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I+    +  + +     + ++  A + G +     L     A       L+    + 
Sbjct: 192 GYTISLADTEQTVANVARFDVFQLSGAWLGGDVQRVARLLGGLEAEGDEPVLLVWAVAED 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTE 283
            ++L ++         + + +  +  
Sbjct: 252 VRMLIRLAAAL-KQGKTVQAVRNELR 276


>gi|229822876|ref|ZP_04448946.1| hypothetical protein GCWU000282_00166 [Catonella morbi ATCC 51271]
 gi|229787689|gb|EEP23803.1| hypothetical protein GCWU000282_00166 [Catonella morbi ATCC 51271]
          Length = 340

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 118/281 (41%), Gaps = 18/281 (6%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL----STEKKVLDC-----LEE 103
           F +   +  + +  ++   +E ++ S F+ K+++LI+N     S+ K  +D      L  
Sbjct: 46  FEVSRFDLNDTE--LAAILDEADAFSFFADKRVVLIDNAQILVSSSKVKVDDQDQKRLLA 103

Query: 104 IIIKNICNHIII--IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161
            +       ++I    SN++ K   L K  +     + ++    +   +   ++  L   
Sbjct: 104 YLADPNPASLLIWICDSNQVDKRKKLTKAFQAQAKWVDVAPL--DAKGMGAYLQAYLKES 161

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
              IS+E  + L   +  D   +  EL KL+ Y  +   IT + +KD++  +    +  +
Sbjct: 162 SLQISREGLEELRMRVNDDLTLAMAELHKLAQYSNQGKPITLEVIKDLVPRSLETDVFSL 221

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281
             A ++ K+  A+ +    L +K    AL    + +F+LL ++ ++    +  +++    
Sbjct: 222 SQAVLKRKLSQAVQIYQDLLLAKHEPVALHALLVSQFRLLIQVKLL---GHQGYQQAEIA 278

Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            +  + P +  +  E++R  +   + +  H +       ++
Sbjct: 279 QQLGVHPYRVKLALETVRRLDLRQLYDFYHALAEADFQLKQ 319


>gi|259047455|ref|ZP_05737856.1| DNA polymerase III, delta subunit [Granulicatella adiacens ATCC
           49175]
 gi|259035646|gb|EEW36901.1| DNA polymerase III, delta subunit [Granulicatella adiacens ATCC
           49175]
          Length = 339

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 18/312 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + V++  G +  L       F + I        ++   N  E+   I T   +  S   F
Sbjct: 16  NLVYLVQGKEPYLQELARKVFLETIVAPEDQDLNVGRFNMEEVS--IQTAIQDAESVPFF 73

Query: 81  SKKKIILIENLS-----TEKKVLD----CLEEIIIKNICNHIIIIKSN--EIKKNNTLRK 129
            +++++L++N S      EKK +D     L+  +   + + +++  +   ++ +   + K
Sbjct: 74  GERRLVLVDNPSFFTGEKEKKSMDHQLERLQAYLENPMDSSVMVFFAPYDKLDQRKKIVK 133

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +K    + +      +  +   I +SL   Q SI +EA + LL         S  EL 
Sbjct: 134 QLKK--VAVLLDASELTERDVKQYIRDSLRNHQYSIQEEALETLLVKTQYSLTNSMKELD 191

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL    ++  +I  + V+ ++  T    I E+  + ++ +   A+ +    L  K     
Sbjct: 192 KLMIASIDTKMIPLELVESLVAKTLEQNIFELGESILKKEGVKALQIYHDMLLQKEDPLK 251

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +    L +F+LL ++  +K       E  IQKT   + P +  I  +  R +   L+ + 
Sbjct: 252 MNAILLGQFRLLLQVSYLKREGYQEPE--IQKTL-GVHPYRVKIALQQSRRFGLPLLEKA 308

Query: 310 LHKIDHRIHLAR 321
             ++    +  +
Sbjct: 309 FMQLVDTEYALK 320


>gi|147668696|ref|YP_001213514.1| DNA polymerase III, delta subunit [Dehalococcoides sp. BAV1]
 gi|146269644|gb|ABQ16636.1| DNA polymerase III, delta subunit [Dehalococcoides sp. BAV1]
          Length = 342

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 124/342 (36%), Gaps = 42/342 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++IF GSD   + E + Q K+ +        +  +L A  +    +   N + +    + 
Sbjct: 2   LYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTA--AELLNYVQTIPFLAP 59

Query: 83  KKIILIENL---------------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
            +++++  L               +  K   D     +       + ++      K+   
Sbjct: 60  ARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALDNLPPTTLAVLLDYTTAKDGDY 119

Query: 128 RKIAEKFTSVLAISCY-------------PDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
           R+  EK +++     +             P +  +L   + +        +S  A ++L 
Sbjct: 120 REK-EKVSALATNPLFKIIGSRAEVKHFAPLSAQNLPGWVMQRAKQSSIQMSVPAARLLG 178

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
              G D  A   E++KL  Y     +I E  V+ ++     + I  +++A +  K+  A 
Sbjct: 179 RLAGPDLWALSTEIEKLGLYAQG-RVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKEAQ 237

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIPMKRN 292
                F ++      LL   +++ +L+ +   +K+      E  K++  +E  +    R 
Sbjct: 238 QSLAAFTSAGGSPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYAL----RK 293

Query: 293 ILQESLRIWNKNLVRETLHKIDHR---IHLARKKKYLEKNII 331
              +++   N + ++    K+      I   R +  L  +++
Sbjct: 294 TASQAVCQ-NMDSLKNIYTKLLETDLYIKTGRFEPELALSLL 334


>gi|46143864|ref|ZP_00133843.2| COG1466: DNA polymerase III, delta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208350|ref|YP_001053575.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           L20]
 gi|126097142|gb|ABN73970.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 341

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 110/313 (35%), Gaps = 18/313 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  LI E  +   +   +   D    V +            +    S  LF 
Sbjct: 19  PFYLLTGNDLLLINESKDHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136
            ++II++    +     +  + E+   +  + ++I+     S  ++K     +I      
Sbjct: 76  NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---GAQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C       L   I       +  I  EA Q+L  +  G+ +A +  LQ L     
Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+    K+++  +      + I+A ++GKI  A  +       ++    LL    +
Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251

Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310
           +   LLE     +   N +    +           +   +R   Q +++      + + +
Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311

Query: 311 HKIDHRIHLARKK 323
            ++       +++
Sbjct: 312 QRLAELEKQVKQE 324


>gi|228476070|ref|ZP_04060778.1| DNA polymerase III, delta subunit [Staphylococcus hominis SK119]
 gi|314936293|ref|ZP_07843640.1| DNA polymerase III, delta subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269893|gb|EEK11373.1| DNA polymerase III, delta subunit [Staphylococcus hominis SK119]
 gi|313654912|gb|EFS18657.1| DNA polymerase III, delta subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 324

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 120/329 (36%), Gaps = 14/329 (4%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +++ +   YG    L+ +  N+  ++      D F+ V  N  +   N      E  +  
Sbjct: 1   MANNIMAIYGEVPELVEKKSNEIVESYLNEKKDDFNYVKYNLYDTSFN--QIMEEALTMP 58

Query: 79  LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             S+KK I+++N    + EK   D       + E + K    + II +  + K +   + 
Sbjct: 59  FISEKKAIVVKNAFIFTGEKVSKDIQPNNEQVNEFLEKYDGENFIIFEVYQNKLDERKKI 118

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                 +         ++  +   I+  L    K I ++A  + +   G +      EL+
Sbjct: 119 TKTLKKTSKLTKVEQMSEQEIKKWIKNKLHENFKDIKQDALDLFIELTGINFNIVSQELE 178

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+  +  E   I ++ V++II  +    +  +     +G+ Y AI L    +  K     
Sbjct: 179 KIILFLGERPTINKKDVEEIINRSLEQNVFLLTEYIQKGEKYKAIQLIKDLIVMKEEPIK 238

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           LL      +  L     I      S ++I +    N+ P +  +    ++ +    +   
Sbjct: 239 LLALITSNY-RLYYQCKILSRKGYSGQQIAKTI--NVHPYRVKLALNQVKHYQLTHLLNI 295

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           + +     +  +     ++ I+   IL +
Sbjct: 296 IDQCAETDYKLKSSYMDKQLILELFILSL 324


>gi|56477922|ref|YP_159511.1| DNA polymerase III subunit delta [Aromatoleum aromaticum EbN1]
 gi|56313965|emb|CAI08610.1| DNA polymerase III, delta subunit [Aromatoleum aromaticum EbN1]
          Length = 335

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 114/327 (34%), Gaps = 13/327 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G++  L+ E  +  +        D    +V+          +      + SLF 
Sbjct: 18  PLYLLHGNEPLLVLEAADLVRAAARRQGFDERETLVVGQGF---RWESLSAAAGNLSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
             K+I   I      +   D L+          + +I   E+             + + +
Sbjct: 75  GSKLIDLRIPGGKPGRDGGDALQRYARSLPSGIVTLITLPEVDWATRKTAWFTALSQLGV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +      +  L + I   L   +++ S EA   +  ++ G+ +A+  E+ KL      +
Sbjct: 135 TVELNAPERERLGEWIAVRLARQKQTASPEALAFIAEHVEGNLLAAHQEILKLGL-LHAE 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             ++ + V++ + +     I ++ +A ++G       L +           +L     + 
Sbjct: 194 GSLSLEDVQNAVLNVARYDIAKLRDALVEGDPVRCTRLLEGLQGEGAAPPLVLWALANEI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           ++L K+   K          + K E+     ++  L  +L       +R     + H   
Sbjct: 254 RMLAKLCAGKTAG--QPLATLFKAERIFDERRKYALSSALGRVRTGTLRAA---LLHAAK 308

Query: 319 LARKKKYLEKNIIFQTILYIA-QTACK 344
           + R  K L    ++   L +A + A +
Sbjct: 309 IDRIIKGLAPGDVWDEFLQLAMRLARR 335


>gi|89074969|ref|ZP_01161414.1| DNA polymerase III subunit delta [Photobacterium sp. SKA34]
 gi|89049208|gb|EAR54772.1| DNA polymerase III subunit delta [Photobacterium sp. SKA34]
          Length = 341

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L  E    I Q  +         F++      + Q + +   +   + 
Sbjct: 17  RQTYLLFGNEPLLKQECGDNIKQLAQQQGFLERHRFTI------DNQLDWNQVLDCCQAM 70

Query: 78  SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLFS ++II +E             L E++     + ++++    + K     K  +   
Sbjct: 71  SLFSAQQIIELEFPETGLNANQAKALLEVVAHLNPDILLLLTGPYLNKKQEATKWFKALD 130

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + L + C   +   +   I+            E+ Q+L     G+ +A    L KL   
Sbjct: 131 GLGLYVPCNTPDAKQMPRFIQTRCRNLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   +++ +   +     ++++A + G+   +  +        + +  LL   
Sbjct: 190 LYPDGELTIIRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGIEATILLRTL 249

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++   L K+             I ++    +   +R I   +L     + + + + ++ 
Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREIYVGALHRLPLSRLVKIIRQLT 306

Query: 315 HRIHLAR 321
                 +
Sbjct: 307 QLEIQVK 313


>gi|325266088|ref|ZP_08132774.1| DNA-directed DNA polymerase III delta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982726|gb|EGC18352.1| DNA-directed DNA polymerase III delta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 335

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 91/263 (34%), Gaps = 6/263 (2%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G ++ L  E ++  +       +   ++  +       N      E  S  LFS++
Sbjct: 18  YLIHGDEELLRIEAVDMLRAAGQQQGYRQRTVYTVEGSHFDWNA--VLAETQSMGLFSEQ 75

Query: 84  KI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           K   I I +    K   D L E+  +     ++++   ++ K     K           +
Sbjct: 76  KWLEIHIPSGKPGKNGGDALCELAERLPDAMVLVLVLPKLDKAQQQSKWFGAFSRLGAVV 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
              P     L   I E L   +  I  +A  +    + G+ +A++ E+ KLS       L
Sbjct: 136 EAQPVTGHALPAWIRERLRQHRLDIESDALTLFAERVEGNLLAAKQEIDKLSLLYEAGHL 195

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +    ++  I       + ++ +A + G +     L D   A       +L    +  + 
Sbjct: 196 LQTADIEQAIAQVARFDVFQLSSAWMAGDMARVARLLDGLQAEGDEPVLMLWSVAEDIRT 255

Query: 261 LEKIHIIKECSNISFEKIIQKTE 283
           + ++         +  ++  +  
Sbjct: 256 MIRLAAAL-RQGKTVTQVRNELR 277


>gi|165976295|ref|YP_001651888.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876396|gb|ABY69444.1| DNA polymerase III delta subunit [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 341

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 109/313 (34%), Gaps = 18/313 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  LI E      +   +   D    V +            +    S  LF 
Sbjct: 19  PFYLLTGNDLLLINESKAHIVQAARLADFDEKQEVSIANDT---KWEALFEAAQSNGLFF 75

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTS 136
            ++II++    +     +  + E+   +  + ++I+     S  ++K     +I      
Sbjct: 76  NRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQAWFTQI---EAQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C       L   I       +  I  EA Q+L  +  G+ +A +  LQ L     
Sbjct: 133 TVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLALKQALQMLQLR-F 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+    K+++  +      + I+A ++GKI  A  +       ++    LL    +
Sbjct: 192 NDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEEVQPVVLLRIIQK 251

Query: 257 K-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRIWNKNLVRETL 310
           +   LLE     +   N +    +           +   +R   Q +++      + + +
Sbjct: 252 ELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAVQRLTYKKLYQLI 311

Query: 311 HKIDHRIHLARKK 323
            ++       +++
Sbjct: 312 QRLAELEKQVKQE 324


>gi|300690444|ref|YP_003751439.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum
           PSI07]
 gi|299077504|emb|CBJ50130.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum
           PSI07]
          Length = 358

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E ++  ++         FS   +  +E   + S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + I ++    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTITLVTLPRLDFATAKSAWFTALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPDLEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|78484826|ref|YP_390751.1| DNA polymerase III, delta subunit [Thiomicrospira crunogena XCL-2]
 gi|78363112|gb|ABB41077.1| DNA polymerase III, delta subunit [Thiomicrospira crunogena XCL-2]
          Length = 338

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 115/340 (33%), Gaps = 29/340 (8%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I +  F+++     F    + + YG +   +   ++  +  +    +       ++A   
Sbjct: 2   IMAPAFLKQLQNPHFEIKPITLIYGEEPLYVRRALDGLRGLLKSQEYFQRDRYEVDASFK 61

Query: 64  QKNISTFWNEINSTSLFSKKKIILI-----ENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
             +      E  + +LF+ ++II +              +      +        ++I  
Sbjct: 62  WAD---LKMETQAGTLFADRRIIELDIPKGTPGKEGGAFIQEWANAMHDQPPEICLVITC 118

Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            ++       K  +        +   P   I L+   +        S+ +EA  +L   +
Sbjct: 119 EKLDSRQLKSKWVQAIEAHGWVVQSKPIEGIGLLKWCQNRAQEAGLSLDEEAAGLLSERV 178

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  E++KL+        +T Q++ D + D     +  +  A + G+   A+ + 
Sbjct: 179 EGNLLAADQEMEKLALLFPAGSALTAQNIIDNVADQAHYQLFALSTAMLFGRTQYALQIL 238

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
                  + +  +L    ++ + L          +I+ ++ +              + + 
Sbjct: 239 HRLQQEGLEAPIVLWLLSKELRQLI---------SIAQKQQMLSL---------PQVYKQ 280

Query: 298 LRIWNKNLVR--ETLHKIDHRIHLARKKKYLEKNIIFQTI 335
           LRIW+         L + D     +     L+ ++  + +
Sbjct: 281 LRIWSSKQAEFSAALQRHDLAYWQSLLNVALQVDLTIKGL 320


>gi|330445212|ref|ZP_08308864.1| DNA polymerase III, delta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489403|dbj|GAA03361.1| DNA polymerase III, delta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 341

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L  E    I Q  +         F++      + Q + +   +   + 
Sbjct: 17  RQAYLLFGNEPLLKQECGDSIKQLAQQQGFLERHHFTI------DNQLDWNLVLDCCQAM 70

Query: 78  SLFSKKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLFS ++II   + +          L E+I     + ++++    + K     K  +   
Sbjct: 71  SLFSAQQIIELDVPDTGLNANQAKALLEVIEHLNPDILLVLTGPYLNKKQEATKWFKALD 130

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           ++ L + C   +   +   I+    +       E+ Q+L     G+ +A    L KL   
Sbjct: 131 AIGLYVPCNTPDAKQMPRFIQARCRVLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   +++ +   +     ++++A + G+   +  +        + +  LL   
Sbjct: 190 LYPDGELTIVRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGVEATILLRTL 249

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++   L K+             I ++    +   +R +   +L       +   + ++ 
Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREMYIGALHRLPLTRLVGIIRQLT 306

Query: 315 HRIHLAR 321
                 +
Sbjct: 307 QLELQVK 313


>gi|284929010|ref|YP_003421532.1| DNA polymerase III subunit delta [cyanobacterium UCYN-A]
 gi|284809469|gb|ADB95174.1| DNA polymerase III, delta subunit [cyanobacterium UCYN-A]
          Length = 326

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 110/296 (37%), Gaps = 14/296 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++ F+G D   I + I + +K +       F+   ++       +    N++ +  L + 
Sbjct: 3   IYFFWGEDNFRIIQTIQKLRKKVINPEWIQFNYHKIHEENTYSILEAL-NQVMTPVLGTG 61

Query: 83  KKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEK 133
           +K+I +E  S        +   +E  I     +   ++ S++     +K      K A+ 
Sbjct: 62  EKLIWLEGSSILQQCSDDIFTKIEPFIAAIPNDSNFVLTSSKRPNKKLKSTKLFEKYADM 121

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               L +    D    L+   ++       ++S  A  +L+ ++G D     NEL+KLS 
Sbjct: 122 REFSLILPWKIDE---LITKAQQFSEEIGVNLSSSALNLLVESVGNDTRLLWNELEKLSL 178

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y  E      +     I +       ++  A  QG    A+ +    L+       +L  
Sbjct: 179 YNYEKEKPVSKDTVSSIVNISNYSSLQLAKAISQGNKEKALEITIKLLSYNEHPLKILTT 238

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            + +F++   I +  E    +   +I K  +   P +   L++ ++      + E 
Sbjct: 239 LVGQFRIWTIIKLKIET-GENDNTVIAKAAEVSNPNRLFFLRKEIKNIKSEDLLEA 293


>gi|17230936|ref|NP_487484.1| DNA polymerase III subunit delta [Nostoc sp. PCC 7120]
 gi|17132577|dbj|BAB75143.1| alr3444 [Nostoc sp. PCC 7120]
          Length = 329

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 127/333 (38%), Gaps = 16/333 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   I + +   +  +       F+       +    I    N++ + +  +
Sbjct: 2   PIYVYWGEDDFAIAKAVTTLRDRVLDPLWTSFNYTSFPPEDGDAAIQAL-NQVMTPAFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             +++ + N +      + VL  L   +     N  +++  +      +K    L++ A 
Sbjct: 61  GGRLVWLMNTNLLQNCPENVLAELTRTLSVIPENSFLLLTCHNKPDERLKSTKLLKQSAT 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +F     I  +      L+  + ++       ++ ++ ++L   +G D     NE++KL 
Sbjct: 121 EFREFPLIPPWKTEL--LIQSVNQAAQTVGVKLTPKSAELLAEAVGNDTRLLYNEMEKLR 178

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y  +    I E  V  ++ +T    ++ +  A   G    A+ +    + +  P   ++
Sbjct: 179 LYAEDSNRPIEENTVTRLVRNTTHNSLQ-LAAAIRVGDTAKALTILADLINAAEPELRII 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F+    + ++ E    + + I Q  E    P +   LQ+ ++  +   +   L 
Sbjct: 238 ATLIGQFRTWLWVKLMVESGERNPQAIAQAAEIG-NPKRIYFLQQEVQPLSLRQLISCLP 296

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            +       ++ +  E +I+   I+ + Q   +
Sbjct: 297 LLLELEVTVKQGRA-EISILQIKIIELCQLCQR 328


>gi|256819305|ref|YP_003140584.1| DNA polymerase III, delta subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580888|gb|ACU92023.1| DNA polymerase III, delta subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 338

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 104/304 (34%), Gaps = 18/304 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + +  + ++       F  +VL   ++   +    +      + S
Sbjct: 18  PIYFLMGEEPYFIDIISDYIEDHVLQEDQKGFDQIVLYGQDVS--VPAIIDYARRFPMMS 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++I+++     K  +D L   +       +++   K +++     L K  +K    + 
Sbjct: 76  DHQVIIVKEAQNLKNTIDQLVPYVENPTPTTVLVFCYKYDKLDARKKLLKTLQKNKDCVL 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +      +  +   + + L     SI  +A Q+L+  LG D    +NE+ KL+    E+ 
Sbjct: 136 LESKKLYENQIATWLPDVLKKKHLSIQSKAIQMLVDFLGTDLSRIQNEVNKLALIVPENT 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            +T   ++  I  +      E+ +A      Y    +   F  +    P    L      
Sbjct: 196 QVTPDIIEKNIGISKEFNNYELKSAIAVNDSYKVTRILKHFADNPKDNPLVMTLTVLYGY 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           FQ L   H + + S  +   ++   +  I           ++          + ++   I
Sbjct: 256 FQQLLGFHGLTDQSEKN---VMATLKVPIF---------GIKDLRSGAQHYPMKRVSAII 303

Query: 318 HLAR 321
              R
Sbjct: 304 AALR 307


>gi|302880068|ref|YP_003848632.1| DNA polymerase III, delta subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582857|gb|ADL56868.1| DNA polymerase III, delta subunit [Gallionella capsiferriformans
           ES-2]
          Length = 332

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 111/306 (36%), Gaps = 13/306 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG    L+ E  +  +    +     F+       E     +   N   S SLF+
Sbjct: 18  PLYVVYGDALLLVNEAADSIRAAARLAG---FTERDTLIAEQHFKWNELKNCAQSMSLFA 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++   I       +    L++ +     + + +I   ++       +          
Sbjct: 75  ERRVVDLRIPTGKPGTEGGLALQDYVSDMNDDVLTLITLPKLDWTAQKTQWFSALDRHGV 134

Query: 140 ISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           + C  D   + L D + + L    +S        L     G+ +A+  E+QKL       
Sbjct: 135 MICADDIPRNQLPDWLADRLRRQSQSTDTATLDFLADRCEGNLLAAFQEIQKLGL-LFPA 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +++ + VK+ + D     I ++  A ++G       + D   A    +  +L    ++ 
Sbjct: 194 GVLSFEQVKEAVMDVARYDIFKLSEAMLKGDGARYAHILDGLRAEGTATVLILWAISEEI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDH 315
           + L K+ +      ++    ++     +   K+N+++ + R      +   +H   K+D 
Sbjct: 254 RTLGKL-LQAMQHGVNLRDAMRDVR--VRRDKQNLIESAARRLKFPHIERAIHHAAKLDK 310

Query: 316 RIHLAR 321
            I   R
Sbjct: 311 TIKGLR 316


>gi|186684242|ref|YP_001867438.1| DNA polymerase III subunit delta [Nostoc punctiforme PCC 73102]
 gi|186466694|gb|ACC82495.1| DNA polymerase III, delta subunit [Nostoc punctiforme PCC 73102]
          Length = 329

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 118/323 (36%), Gaps = 17/323 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   + + I   + ++       F+       +    I    N++ + +  +
Sbjct: 2   PIYVYWGEDDFAMEKAIAVLRDHVLDPNWISFNYTAFTPDQADAAIQAL-NQVMTPTFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             +++ + N +      + VL  L   +     N  +++ S       +K    L++ A 
Sbjct: 61  GGRLVWLINTTLYQHCPENVLAELVRSLSVIPENSFLLLSSRNKPDERLKSTKLLKQFAT 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +F     I  +      L+  + +        ++    Q+L  ++G D     NE++KL 
Sbjct: 121 EFREFPLIPPWKTEL--LVQSVNQVAQTVGVKLTANTAQLLAESVGNDTRLLYNEIEKLR 178

Query: 193 SYCLE-DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y    +  +    V  ++ +T    ++ +  A   G    A+      + +  P   ++
Sbjct: 179 LYAYGSNKPLDVDTVTKLVRNTTQNSLQ-LAAAIRIGDTAKALTTLADMINASEPGLRIV 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F+    + I+ E    + + I    +    P +   LQ+ +++ +   +   L 
Sbjct: 238 ATLIGQFRTWLWVKIMIESGERNQQAIAIAADIG-NPKRIYFLQQEIKLLSVQQLISCLP 296

Query: 312 KIDHRIHLARKKKYLEKNIIFQT 334
            +         K+   +   FQT
Sbjct: 297 LLLE--LEVSLKQGASEMSTFQT 317


>gi|299065705|emb|CBJ36879.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum
           CMR15]
          Length = 358

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E ++  ++         FS   +  +E   + S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPELEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|149928116|ref|ZP_01916363.1| DNA polymerase III subunit delta [Limnobacter sp. MED105]
 gi|149823202|gb|EDM82439.1| DNA polymerase III subunit delta [Limnobacter sp. MED105]
          Length = 346

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 94/277 (33%), Gaps = 14/277 (5%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEK 95
            + +++ +         +V ++      +   F +     SLF    ++   I      K
Sbjct: 36  ADLYRQRLKKQTDYQRHIVEVDRQF---DPQEFLSLFAEASLFGDVSLVDLRINQPKLSK 92

Query: 96  KVLDCLEEI---IIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLM 151
           +  + L +    I      H +++ + ++ K        A+       I+C P     L 
Sbjct: 93  EAAEALGKAAQWIAAGDTGHYLLVSAPKLNKTQEKSAGFADLLAKGCEIACRPVGADTLP 152

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             I ++       + +E    L     G+ + +   ++KL+        +  + V+ ++ 
Sbjct: 153 GWIAQAAKRKGVQLDRETCSWLAEKTEGNLLVAHQTIEKLAL--EHQGAVAIEQVQGMVA 210

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           ++    + ++  + + G       + +   A       +L    ++ + +          
Sbjct: 211 NSARFNVFDLGGSLLAGDAKRITRMMEGLEAEGEAPTLVLWALQEEIRAIRDTQQAM-RR 269

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +S     ++    I   ++N +  +L+  N   +++
Sbjct: 270 GMSLSDACRQNR--IWGQRQNHIAAALKRHNPGSLQK 304


>gi|255656457|ref|ZP_05401866.1| hypothetical protein CdifQCD-2_12334 [Clostridium difficile
           QCD-23m63]
 gi|296450097|ref|ZP_06891859.1| DNA-directed DNA polymerase III delta subunit [Clostridium
           difficile NAP08]
 gi|296878478|ref|ZP_06902484.1| DNA-directed DNA polymerase III delta subunit [Clostridium
           difficile NAP07]
 gi|296261105|gb|EFH07938.1| DNA-directed DNA polymerase III delta subunit [Clostridium
           difficile NAP08]
 gi|296430562|gb|EFH16403.1| DNA-directed DNA polymerase III delta subunit [Clostridium
           difficile NAP07]
          Length = 347

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 129/310 (41%), Gaps = 24/310 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++FYG +  LI   I  FK +++    D F+L +++  EI  N     + I +     
Sbjct: 17  KMYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMD 73

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAE 132
            +KI++I++       +K   D  E+ +I+++ N      I+ +   ++ K  +L K   
Sbjct: 74  DRKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI- 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SR 185
             ++ +   C   + + L   I++S  +    I        +   G  D+ +        
Sbjct: 133 -GSNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLE 191

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ K+SS+  +   +T   +  +        I ++I+   +    NA+ + +  +    
Sbjct: 192 NEINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGE 251

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +     ++F+++ ++    +    S + I  K + +   + + +  +  + ++ ++
Sbjct: 252 SVLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDI 308

Query: 306 VRETLHKIDH 315
           + E L+ I  
Sbjct: 309 IVEILNYILE 318


>gi|260767230|ref|ZP_05876171.1| DNA polymerase III delta subunit [Vibrio furnissii CIP 102972]
 gi|260617738|gb|EEX42916.1| DNA polymerase III delta subunit [Vibrio furnissii CIP 102972]
          Length = 341

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 108/303 (35%), Gaps = 11/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  LI E  +  ++         F       ++   +    ++   S SLFS
Sbjct: 18  PVYLVFGNEPLLIQESRSAIERKAREQG---FEEKHHFNVDASLDWHEVYDCCQSMSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +E         +   L ++      + +++I   ++ K        +       
Sbjct: 75  SRQVIELEIPEAGINAAIGKELTKLAQTLNPDILLLIVGAKLTKAQENSAWFKALMAEGC 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ++C   +   L   +         S   EA Q+L     G+  A    L+KL+     D
Sbjct: 135 LVNCLTPDISRLPQFVAARCRALGLSPDAEAIQMLAQWHEGNLFALAQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +       ++A ++GK   A  +     A  +    L+    ++ 
Sbjct: 194 GQLTLIRLEESLSRNNHYTPFHWVDALLEGKANRAQRILRQLAAEDVEPIILMRTAQKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
             L  + +    ++     I +K    +   KR +   +L+  +   +   +  +     
Sbjct: 254 VQLLHMRVAM--NHQPLGAIFEKHR--VWQNKRPLYSAALQRLSIQRLHHLVQLLAQSEI 309

Query: 319 LAR 321
           +A+
Sbjct: 310 VAK 312


>gi|312882705|ref|ZP_07742442.1| DNA polymerase III subunit delta [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369666|gb|EFP97181.1| DNA polymerase III subunit delta [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 337

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 115/296 (38%), Gaps = 11/296 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++  G++  LI E  +   ++  +     F+     +LE   +    +N + + SLF
Sbjct: 17  HPIYLLLGNEPLLIEESRSAIYQSAHMEG---FTEKQRFSLEKNAHWEDIYNSVQAMSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S KKII +E  +      +   L  +      + I+++  ++I K     K  ++ ++  
Sbjct: 74  SSKKIIELELPSSGVNNSITKELAALFPLLHPDIILVVIGSKITKAQENAKWFKQLSATA 133

Query: 139 A-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C   +   L   I     +   +   EA Q+L     G+ +A    L+KL+     
Sbjct: 134 CRVNCLTPDITRLPQFIRARCKLRNLTPDDEALQMLSQWYEGNLLALNQSLEKLTL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +    ++  +  ++   I    +A + GK+  +  +     A  +    +     ++
Sbjct: 193 DGELNLVRLEKALSRSNHYTIYHWCDALLAGKMKRSQRILRQLKAEGIEPVIITRALQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              L  +    +  N+   +I ++    I   KR +   +L   +   ++  L  +
Sbjct: 253 LTQLFAMATNLKLHNLH--QIFEQHR--IWQSKRPLYTAALGRLSTTKIQHLLQLL 304


>gi|315180855|gb|ADT87769.1| DNA polymerase III, delta subunit [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 108/303 (35%), Gaps = 11/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  LI E  +  ++         F       ++   +    ++   S SLFS
Sbjct: 18  PVYLVFGNEPLLIQESRSAIERKAREQG---FEEKHHFNVDASLDWHEVYDCCQSMSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +E         +   L ++      + +++I   ++ K        +       
Sbjct: 75  SRQVIELEIPEAGINAAIGKELTKLAQTLNPDILLLIVGAKLTKAQENTAWFKALMAEGC 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ++C   +   L   +         S   EA Q+L     G+  A    L+KL+     D
Sbjct: 135 LVNCLTPDISRLPQFVAARCRALGLSPDAEAIQMLAQWHEGNLFALAQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +       ++A ++GK   A  +     A  +    L+    ++ 
Sbjct: 194 GQLTLIRLEESLSRNNHYTPFHWVDALLEGKANRAQRILRQLAAEDVEPIILMRTAQKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
             L  + +    ++     I +K    +   KR +   +L+  +   +   +  +     
Sbjct: 254 VQLLHMRVAM--NHQPLGAIFEKHR--VWQNKRPLYSAALQRLSIQRLHHLVQLLAQSEI 309

Query: 319 LAR 321
           +A+
Sbjct: 310 VAK 312


>gi|253990632|ref|YP_003041988.1| DNA polymerase III subunit delta [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782082|emb|CAQ85246.1| dna-directed dna polymerase iii delta chain [Photorhabdus
           asymbiotica]
          Length = 346

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 114/305 (37%), Gaps = 11/305 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ +G+D  L+ E  +  ++              L+       I +      S SLF
Sbjct: 18  RNCYLIWGNDPLLLQESQDHIRRAAEQHSFTEHFTYTLDNHTEWNEIFSI---CQSLSLF 74

Query: 81  SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++ +  L+        +   L ++      + ++I++  ++ K        +    + 
Sbjct: 75  ASRQTLTLLLPENGLNTVMAAQLVKLEGLLHSDMLLILRGLKLTKAQENSNWFKTLGKNG 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + ISC       L   + +     + ++ + A Q+L     G+ +A    L++LS     
Sbjct: 135 VYISCQTPELNRLPQWVAQRAKTMKLTLEEPANQLLCYCYEGNLLALTQALERLSL-LYP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V++ + D         +++ + GK   A  +          S  LL    ++
Sbjct: 194 DGKLTLHRVENAVNDAAHFTPYHWVDSLLLGKAKRAWHILKQLKQEDCESVILLRTVQRE 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            QLL  +   ++   I  + ++ +    +   +R +L  +L+   ++ ++  +H +    
Sbjct: 254 LQLLLTLK--RQSPTIPMKTLLDQHR--VWQNRRALLTSALQRLTQHDLQRAIHLLVQIE 309

Query: 318 HLARK 322
              ++
Sbjct: 310 LRVKQ 314


>gi|269102008|ref|ZP_06154705.1| DNA polymerase III delta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161906|gb|EEZ40402.1| DNA polymerase III delta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 342

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 102/299 (34%), Gaps = 16/299 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              F+ +G++  L  E    I Q  +         F +      + Q + +   +   + 
Sbjct: 17  RQAFLLFGNEPLLKLECSDAIRQCAEQHGFLERHSFIV------DNQLDWNQVLDCCQAL 70

Query: 78  SLFSKKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKF 134
           SLFS +++I   I            L+++      + ++++    + K     K   E  
Sbjct: 71  SLFSSQQLIELDIPETGLTPTQTKALQQVTAALNPDILLVLTGPRLNKKQEAAKWFKELE 130

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + + I C       L   I+            E+ Q+L     G+ +A    LQKL+  
Sbjct: 131 PNGVYIPCNTPEAKFLPRFIQGRCQQLGLKPDHESVQLLAQWHEGNLLALAQSLQKLTL- 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   +++ +   +     ++++A + G+   +  +        +    LL   
Sbjct: 190 LYPDGELTVIRLQEALSRNNHYTPFQLVDALLAGQAKRSQRILRQLQGEGVEPTILLRTI 249

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            ++   L K+         S   I ++    +   +R I   + +      +   + ++
Sbjct: 250 QRELTQLYKMQ-ELGKKGTSLNVIFEQFR--VWQNRREIYIGAFQRLPLTTLMLLIKRL 305


>gi|329120287|ref|ZP_08248955.1| DNA-directed DNA polymerase III delta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327462628|gb|EGF08951.1| DNA-directed DNA polymerase III delta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 333

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 105/324 (32%), Gaps = 12/324 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G +  L  E ++  ++      +        +  E   +  T      S  LF+
Sbjct: 17  PLCLIHGEEDLLRVEALDTLREAAKKQGYLNRES---HTPETAADWDTLLASAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I      K   D L+ +      + + +I   +++K  T  K          
Sbjct: 74  DLKLLEIHIPGGKPGKTGGDALQTLAENLPADTVTVIVLPKLEKAQTQAKWFAALSKRGT 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +   P     L   I   L     +I  +A  +    + G+ +A++ E+ KL+      
Sbjct: 134 VLEAKPVPAAALPAWIRGRLKKENLAIEDDALALFAERVEGNLLAAKQEIGKLALLHPAG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             ++    +  + D     + ++  A + G     + L +   A       LL    +  
Sbjct: 194 HTLSMADAEQAVADVARFDVFQLAAAWMGGDAARTLKLLEGLEAEGEEPVLLLWTLAEDI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLHKIDHRI 317
           + L ++         S + +        +   +  L  +++R      +   L +     
Sbjct: 254 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPQAVRRIGVARLMAALQECARTD 309

Query: 318 HLAR-KKKYLEKNIIFQTILYIAQ 340
            L +  +      +  QT+  +A 
Sbjct: 310 RLIKGAEAGDAWAVFRQTVCGLAV 333


>gi|209694551|ref|YP_002262479.1| DNA polymerase III subunit delta [Aliivibrio salmonicida LFI1238]
 gi|208008502|emb|CAQ78673.1| DNA polymerase III, delta subunit [Aliivibrio salmonicida LFI1238]
          Length = 345

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 116/301 (38%), Gaps = 10/301 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G++  L  E ++Q +K+      +      L+    Q + +  ++   + SLFS +
Sbjct: 20  YLLFGNEPLLKQECLDQIRKHSFQQGFEEKHQFTLDK---QLDWNLIFDCTQALSLFSSR 76

Query: 84  KIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II   + +          ++E++     + ++I +   + K+    +  +      L I
Sbjct: 77  QIIELTVSDTGLTAAHTSKIKELVPMLHDDILLIFQGPRVNKSQESTQWFKALTQQGLFI 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C   +   L   I++   + +     EA Q+L     G+ +A    L KLS     D L
Sbjct: 137 PCNTPDNQQLPRFIQQRCKLLKLKPDAEAVQMLAQWHEGNLLALAQSLDKLSL-LYPDGL 195

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   +++ +   +     ++++A + G+   A  +        +    LL    ++  L
Sbjct: 196 LTLIRIEEALNRNNHFTPFQLMDALLFGQAKRAQRILRQLEGESVEVVILLRTIQKEVFL 255

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L            +   +  + +  +   +R++ Q +L+  +   ++  +  +       
Sbjct: 256 LLSFQ-QAISQGEAMFTVFDRYK--VWQNRRSLYQAALQRLSMTQIQALIKSLAQLEVAV 312

Query: 321 R 321
           +
Sbjct: 313 K 313


>gi|67923709|ref|ZP_00517176.1| DNA polymerase III, delta [Crocosphaera watsonii WH 8501]
 gi|67854464|gb|EAM49756.1| DNA polymerase III, delta [Crocosphaera watsonii WH 8501]
          Length = 365

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 123/310 (39%), Gaps = 16/310 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS- 81
           V+ F+G D   + + + + ++ I       F+   ++  + +  I    NE  +  +F  
Sbjct: 39  VYFFWGEDDFALAQRVQRLRETILDPNWIQFNYQQISGEDPKSTIEAL-NEAMT-PVFGM 96

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIK----KNNTLRKIAEK 133
             K++ + N S      +++L  L+ I+        ++  +++      K++ L K   +
Sbjct: 97  GGKLVWLVNTSICQQCPEEILTQLQRILPAIPDTSHLLFTTSKKPDKRLKSSKLIKQYAE 156

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 I  +  ++  L+  +++        ++  A ++L  ++G +     NEL+KL  
Sbjct: 157 VREYSPIPPWKTDE--LIKKVKQVAQEIGVKLTPAAVELLAESVGNNSRQLWNELEKLQL 214

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y  +     ++ +   + + +     ++  A  QG    A+ L D  L+   P+  ++  
Sbjct: 215 YGQQANQPLDEKIIATLVNANAQNSLQLAQAIRQGNQGEALQLIDDLLSRNEPALRIVAT 274

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            + +F+    I +  E      + I +  +    P +   L++ LR  +   +  TL  +
Sbjct: 275 LVGQFRTWTIIQLKLEGGETDNKLIAKAADIP-NPNRLYFLRKELRGVSGQRLLATLPIL 333

Query: 314 DHRIHLARKK 323
                  R K
Sbjct: 334 LD--LETRLK 341


>gi|293397304|ref|ZP_06641576.1| DNA-directed DNA polymerase III delta subunit [Serratia odorifera
           DSM 4582]
 gi|291420222|gb|EFE93479.1| DNA-directed DNA polymerase III delta subunit [Serratia odorifera
           DSM 4582]
          Length = 344

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 111/302 (36%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  ++            + L+A     +    ++   + SLF+ +
Sbjct: 21  YLLSGNEPLLLQESQDLIRQAAQQQQFSEHYSISLDAHT---DWDAIFSICQAMSLFASR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +  ++++        + + L ++      + +++++   + K        +    + + +
Sbjct: 78  QTLLLILPENGPTAPIGEQLVKLSSLLHDDILLMLRGPRLTKAQENSAWFKALSPNGVYV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +C    +  L   +       +  +   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 TCQTPEQAQLPRWVATRAKTMKLEVDDAANQLLCYCYEGNLLALAQALERLSL-LYPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A  +             LL    ++  +
Sbjct: 197 LTLPRVEQAVNDAAHFSPYHWLDALLAGKSKRAWHILQQLQQEDAEPVILLRTLQRELLM 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +      +      +  + +  +   +RN++ ++L+  +   +++ +H +       
Sbjct: 257 LLTLQRRMASA--PLRTLFDQHK--VWQNRRNLITQALQRLSAAQLQQAVHLLTQIEITL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|295695850|ref|YP_003589088.1| DNA polymerase III, delta subunit [Bacillus tusciae DSM 2912]
 gi|295411452|gb|ADG05944.1| DNA polymerase III, delta subunit [Bacillus tusciae DSM 2912]
          Length = 362

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 22/320 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +  +   ++ + +    ++     +L   +  E    I     E  +   F 
Sbjct: 17  PVYVLGGPETYVARMVVEELENACGLSV-PELNLGRYDLSET--PIQQVALEARTPPFFG 73

Query: 82  KKKIILIENL---STEKKVLDCL---EEIIIKNICNHIIIIKSNEIKKNNT---LRKIAE 132
            +++++       S   KV   L   EE +       ++++   + K +     +R++ E
Sbjct: 74  DRRLVIATGGEALSGRSKVPHDLTSWEEYVADPSPTAVVVLLLGDHKMDERKKWVRRVKE 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                +   C    +  L   + + +      +  +A   L+   GG       EL KLS
Sbjct: 134 TGRWWM---CPSPKESELTAWVNKEVQRRGFRMGADAVNRLILMSGGHLALIAGELDKLS 190

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      I+ + V  ++       I   ++  ++  +  A+   D  L  K     LL 
Sbjct: 191 LYAPGQ-TISREDVDLLVVPFPEQDIFRWVDDVVRLDMDRALTGLDRLLKQKENPFKLLM 249

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              ++F+L+       +  +++ +      E  + P    I  E  R +    + + L  
Sbjct: 250 LLARQFRLMYHALNEYKSGHVNTDL---SAELGVRPYALKIALEQGRRYTLRQLSDVLQW 306

Query: 313 IDHR---IHLARKKKYLEKN 329
           +      I   R+      N
Sbjct: 307 LADADADIKTGRRTDRAALN 326


>gi|90581610|ref|ZP_01237401.1| DNA polymerase III subunit delta [Vibrio angustum S14]
 gi|90437193|gb|EAS62393.1| DNA polymerase III subunit delta [Vibrio angustum S14]
          Length = 341

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 106/307 (34%), Gaps = 16/307 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L  E    I Q  +         F++      + Q + +   +   + 
Sbjct: 17  RQAYLLFGNEPLLKQECGDNIKQLAQQQGFLERHRFTI------DNQLDWNQVLDCCQAM 70

Query: 78  SLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLFS ++II +E             L E++     + + ++    + K     K  +   
Sbjct: 71  SLFSAQQIIELEFPETGLNANQAKALLEVVAHLNPDILFLLTGPYLNKKQEATKWFKALD 130

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + L + C   +   +   I+    +       E+ Q+L     G+ +A    L KL   
Sbjct: 131 GLGLYVPCNTPDAKQMPRFIQARCRMLGLKPDHESVQMLAQWHEGNLLALAQSLHKLVL- 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   +++ +   +     ++++A + G+   +  +        + +  LL   
Sbjct: 190 LYPDGELTIIRLQEALSRHNHYTPFQLVDAVLAGQAKRSQRVLRQLQGEGIEATILLRTL 249

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++   L K+             I ++    +   +R I   +L     + + + + ++ 
Sbjct: 250 QRELTQLYKMQ-EMGKKGTPLNIIFEQFR--VWQNRREIYVGALHRLPLSRLVKIIRQLT 306

Query: 315 HRIHLAR 321
                 +
Sbjct: 307 QLEIQVK 313


>gi|218248896|ref|YP_002374267.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 8801]
 gi|257061956|ref|YP_003139844.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 8802]
 gi|218169374|gb|ACK68111.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 8801]
 gi|256592122|gb|ACV03009.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 8802]
          Length = 327

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 121/316 (38%), Gaps = 10/316 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F+G D   I + + + + +I       F+   +   +    +      +     F 
Sbjct: 2   PVYLFWGEDDFAIAQAVQKRRDSILDPNWIEFNYHKIPGDQSDAMVEALNQAMTPVFGFG 61

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135
             +++ +            +L  LE  +        +++ S++ K +  L+  K+ EK+ 
Sbjct: 62  G-RLVWVVESIICQQCSDSLLAQLERTLPAIPDISHLLLTSSK-KPDRRLKSTKLLEKYA 119

Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           ++   S  P  N   LM  ++         ++ +A +++  ++G +    R+EL+KL  Y
Sbjct: 120 TIQEFSPIPPWNTDELMAQVQRMASEIGLKLTLKATELIAESVGNNTRQLRHELEKLHLY 179

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                   +  +   + + +     ++     QG    A+ L    ++   P+  ++   
Sbjct: 180 SNNQTKALDVDIIATLVNANTQNSLQLAQVIRQGNSDRALQLITDLISRNEPALKIVATL 239

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+    I +  E      EK+I +      P +   L++ L+ ++   +  TL  + 
Sbjct: 240 VGQFRSWAIIKLTIESGEKD-EKVIAQAADIANPKRLYFLRKELQPFSGQQLLGTLPILL 298

Query: 315 HRIHLARKKKYLEKNI 330
                 ++  +  + +
Sbjct: 299 DLELSLKRGSHPLETL 314


>gi|17547461|ref|NP_520863.1| DNA polymerase III subunit delta [Ralstonia solanacearum GMI1000]
 gi|17429764|emb|CAD16449.1| probable dna polymerase III (delta subunit) protein [Ralstonia
           solanacearum GMI1000]
          Length = 358

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 123/338 (36%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E ++  ++         FS   +  +E   + S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDALRQAARAQG---FSEREVMTVERGFSWSRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGESGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQPELEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|227551298|ref|ZP_03981347.1| DNA polymerase III subunit delta [Enterococcus faecium TX1330]
 gi|227179578|gb|EEI60550.1| DNA polymerase III subunit delta [Enterococcus faecium TX1330]
          Length = 348

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 23  YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 80

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 81  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 140

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 141 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 198

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V+ ++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 199 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 258

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + +R +++ L+ +   +
Sbjct: 259 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 315

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 316 LVEMDYQI-KTGQIEKELSFQLFVLCTGQLLRNR 348


>gi|254976069|ref|ZP_05272541.1| hypothetical protein CdifQC_12179 [Clostridium difficile QCD-66c26]
 gi|255093460|ref|ZP_05322938.1| hypothetical protein CdifC_12479 [Clostridium difficile CIP 107932]
 gi|255101635|ref|ZP_05330612.1| hypothetical protein CdifQCD-6_12549 [Clostridium difficile
           QCD-63q42]
 gi|255307504|ref|ZP_05351675.1| hypothetical protein CdifA_12997 [Clostridium difficile ATCC 43255]
 gi|255315202|ref|ZP_05356785.1| hypothetical protein CdifQCD-7_12657 [Clostridium difficile
           QCD-76w55]
 gi|255517871|ref|ZP_05385547.1| hypothetical protein CdifQCD-_12216 [Clostridium difficile
           QCD-97b34]
 gi|255650987|ref|ZP_05397889.1| hypothetical protein CdifQCD_12421 [Clostridium difficile
           QCD-37x79]
 gi|306520859|ref|ZP_07407206.1| DNA polymerase III, delta subunit [Clostridium difficile QCD-32g58]
          Length = 347

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 128/310 (41%), Gaps = 24/310 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++FYG +  LI   I  FK +++    D F+L +++  EI  N     + I +     
Sbjct: 17  KMYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMD 73

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAE 132
            +KI++I++       +K   D  E+ +I+++ N      I+ +   ++ K  +L K   
Sbjct: 74  DRKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI- 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SR 185
              + +   C   + + L   I++S  +    I        +   G  D+ +        
Sbjct: 133 -GNNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLE 191

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ K+SS+  +   +T   +  +        I ++I+   +    NA+ + +  +    
Sbjct: 192 NEINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGE 251

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +     ++F+++ ++    +    S + I  K + +   + + +  +  + ++ ++
Sbjct: 252 SVLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDI 308

Query: 306 VRETLHKIDH 315
           + E L+ I  
Sbjct: 309 IVEILNYILE 318


>gi|261253670|ref|ZP_05946243.1| DNA polymerase III delta subunit [Vibrio orientalis CIP 102891]
 gi|260937061|gb|EEX93050.1| DNA polymerase III delta subunit [Vibrio orientalis CIP 102891]
          Length = 337

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 14/321 (4%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I + + +++  K L   H  ++ +GS+  LI E     +K       +      ++    
Sbjct: 3   IFADRLVEQLNKQL---HPTYLIFGSEPLLIQESRQAIQKAAFAQGFEERHRFAIDNSF- 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
             + +  ++   + SLFS ++II +E         +   L  +      + I ++  +++
Sbjct: 59  --DWNAVYDCCQAMSLFSAQQIIELELPESGVNAGIAKELISVSEMLHSDIIFVLIGSKL 116

Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K     K  +    +   ++C   +   L   ++           +EA Q+L     G+
Sbjct: 117 TKAQENAKWFKALANNGCWVNCLTPDIQRLPQFVQARCRALNLKPDQEAVQMLAQWHEGN 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A    L+KL+     D ++    +++ +   +       I+A + GK   +  +    
Sbjct: 177 LFALTQSLEKLAL-QYPDGILNLVRLEESLSRHNHFTAFHWIDALLAGKAKRSQRILRQL 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A  + S  L+    ++   L  +    +       ++ +     I   KR +   +L  
Sbjct: 236 EAEGVESVILIRTVQKELTQLLNMANQIQL--KPIGQVFESYR--IWQSKRPLYSSALNR 291

Query: 301 WNKNLVRETLHKIDHRIHLAR 321
                + + L  +     L +
Sbjct: 292 LTPRKIIQLLQLLAKIELLVK 312


>gi|145298095|ref|YP_001140936.1| DNA polymerase III, delta subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850867|gb|ABO89188.1| DNA polymerase III, delta subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 343

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 110/302 (36%), Gaps = 12/302 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G +  L  E I+  ++       D     V+ A     + +  ++   + SLFS
Sbjct: 18  PCYLIFGDEPLLKLEAIDAIRQVARKQGFDERHTFVVEAG---LDWNQVYDACQAMSLFS 74

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
            ++II +E  +  +K +   + EI  +   + ++++    + +        +K +     
Sbjct: 75  ARQIIELELPAKVDKDLAARISEIGKQLHPDLLLVLSGGRLNQTQMKAAWFDKLSQGGTY 134

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +             +             +A   +  +  G+ +A+  E++KL+       
Sbjct: 135 VPVNHPEPRFFPRWMGARFQRFGLKALPDAINFMCHSYEGNLLAASQEIEKLTLLAPPQP 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+  ++++ I         ++I+  ++GK+  A  +     A       L     ++ +
Sbjct: 195 -ISVAYLQETIIRHAHFTPFQLIDTLLEGKVNRAQRILLALRAEGTEPGMLSWALCRELE 253

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKIDHR 316
            L ++ +         E    +    I   ++ ++Q++L          + + + ++D  
Sbjct: 254 QLTELALAARAGQPLVEH-FSRLR--IWQSRQQLIQQALTRLPFTKLQQLWQLMAQLDDA 310

Query: 317 IH 318
           + 
Sbjct: 311 LR 312


>gi|331270021|ref|YP_004396513.1| hypothetical protein CbC4_1842 [Clostridium botulinum BKT015925]
 gi|329126571|gb|AEB76516.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 345

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 119/275 (43%), Gaps = 17/275 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++F GSD+  I   I++    +        +   L+ + ++    +  N   +  L S+K
Sbjct: 25  YVFCGSDEQSIKSNIDKIINKVVNKDFLELNYAQLDGMVVEM--ESIINACETLPLMSEK 82

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132
           ++++I   +        + +KV + L++ I     + ++I   I  N+ +K ++  K  +
Sbjct: 83  RVVVIYRANFLRDKVDKSAEKVFNGLKKYIKDLPQDCVLIMYYIFENDREKESSKLKKID 142

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  S      + L   + E      K+I++    +    +  +     NE++KLS
Sbjct: 143 KDATVVKFSKLK--GMALQKKVSEIFKRKNKNITRSDLALFCNTVENNMDIIENEVEKLS 200

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y ++   IT + + D+I   +   I  +++   Q K  N++ + +  +        +L 
Sbjct: 201 CYTID-REITTKDINDLIVGKNDNDIFNLVDFVSQKKPQNSLDILNELVFKGESVTGILR 259

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
              ++F+L+  I +  E   ++ ++I ++   +  
Sbjct: 260 MIQRQFKLIFDIKLSME-KGMNKDEISKELRLHPF 293


>gi|291530561|emb|CBK96146.1| DNA polymerase III, delta subunit [Eubacterium siraeum 70/3]
          Length = 360

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 114/332 (34%), Gaps = 19/332 (5%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YG ++ L+    ++          +  +L+ L        + T  + I+S  LF+  K 
Sbjct: 33  LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSMPLFADSKA 89

Query: 86  ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136
           +LI +L  EK     ++ +   +        +II     + ++KK  N  L     K  +
Sbjct: 90  VLISDLDLEKFDDNGIETILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                        + +LI +        IS+   Q +      D   +  E  KL SY  
Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRADAQHIAELTLCDLSLASTETDKLCSYA- 208

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + +  +        I  +    ++G    A+++ D  +A K+    +L     
Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLIAQKIEPVVILAALSS 268

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313
            +    +     + +  S ++            +  ++ ++   +   +   +R  L  +
Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +     +      + ++ +TI+ ++    + 
Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKSRR 357


>gi|158336795|ref|YP_001517969.1| DNA polymerase III subunit delta [Acaryochloris marina MBIC11017]
 gi|158307036|gb|ABW28653.1| DNA polymerase III, delta subunit [Acaryochloris marina MBIC11017]
          Length = 339

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 127/329 (38%), Gaps = 19/329 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW---NEINSTS 78
            V++F+G D   + + +    + +       F+L  ++        ++     N++ +  
Sbjct: 2   PVYLFWGEDTYRLSKAVQALHQEVLDPEWLSFNLDKIDVASGSDGTASVIQGLNQVMTPP 61

Query: 79  LFSKKKIILIENL--STEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFT 135
                +++ + N        +L   E  +      +H+++ ++ +    + L K+ +K  
Sbjct: 62  FGLGHRLVWLTNPLVGATADLLPEFERTLPDLPPTSHLLLTQTTKPDGRSKLTKLLQKQA 121

Query: 136 SV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
            V     I  +      ++ +++ +    +  +++ A + L   +G D      EL+KL 
Sbjct: 122 QVTEFALIPPWK--TAQILQMVKRAAHDLEVPLTQAAGEQLADAVGNDTRRLYGELEKLK 179

Query: 193 SYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            Y L          I  + V+ ++  T    ++ +     QG+   A+ L    L    P
Sbjct: 180 LYSLSSDAQNNTKRIGLEIVQHLVSSTTQNSLQ-LAETIRQGQTDQALGLVAELLNLNEP 238

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++   +++F+    + ++   S    E++I +  +   P +   L+++++      +
Sbjct: 239 GLKIVATLIRQFRTWLWVKLMV-VSGEQDERVIARAAEVGNPKRIYFLKQAVQTVTCQQL 297

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTI 335
           R++L  +       ++ +     +I   +
Sbjct: 298 RQSLSCLLDLEVALKQGEAPRSTLITTVV 326


>gi|157376613|ref|YP_001475213.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157318987|gb|ABV38085.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 346

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 112/319 (35%), Gaps = 12/319 (3%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            +  ++L      ++ +G D  L        + +       D F   V    E   N + 
Sbjct: 6   DQLARHLKPLQQCYLIFGDDPWLCETSRTQIYAQA----KRDGFEEKVQLTQENNFNWNE 61

Query: 70  FWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
             +E  + SLFS +++I +         +     + ++     + ++II   ++    T 
Sbjct: 62  LVDEWQAMSLFSSRRVIELTLPQAKPGSEGGTIFQHLMQMENPDVLLIITGPKLAAEQTK 121

Query: 128 RKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
            K  +      + I C           ++  +   +  ++++A+++L +   G+ +A+ +
Sbjct: 122 SKWFKTLDAKGVYIPCATPEGQQFQRWLDGRISHFKLLLTRDAREMLFSLYEGNLLAA-D 180

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +  +L      +  I  Q ++    D     + ++ +A +      A  +     A  + 
Sbjct: 181 QSLQLLQLLSPNTEINSQQLESYFEDQSRFSVFQLTDAMLYNHQDKAQHILSQLKAEGVA 240

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++ G  ++  +L ++    E    S + +  K    I   ++ + Q +L       +
Sbjct: 241 MPIIMWGIFKELAILLQLKSALESQ-QSLQTLWSKLR--IWDKRKPLYQAALNRLTLTQI 297

Query: 307 RETLHKIDHRIHLARKKKY 325
              L          +++  
Sbjct: 298 ESLLCGASAIELKLKQQGM 316


>gi|256827202|ref|YP_003151161.1| DNA polymerase III, delta subunit [Cryptobacterium curtum DSM
           15641]
 gi|256583345|gb|ACU94479.1| DNA polymerase III, delta subunit [Cryptobacterium curtum DSM
           15641]
          Length = 330

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 106/309 (34%), Gaps = 9/309 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D      +I +  + I+      F+    +  + Q          N+    S
Sbjct: 19  PAYLVTGTDDLKKEAVIRRLHERIAREGDLSFNRDEFDGAQAQGEA--IVASCNTLPFAS 76

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++ +      K   +  + E +       ++ + +  + KN  L K   K  +   I
Sbjct: 77  PVRLVEVFAADRLKGSDVAQVIEYLAAPNNQTVLCLVATGLAKNTRLYKAVAKLGAQAVI 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C P  +  L   +         SI++ A   L+  +G + +A   E++KL+        
Sbjct: 137 DCAPPTRRDLPKKVSALAASQGVSITQAAIGTLIDLVGENTVALNAEIRKLALAHWGSDA 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I E  V+ ++  T+     E ++A     +   +++        + ++ LL   + + + 
Sbjct: 197 INENEVRALVSRTNEAKPWEFVDAFSSRNVERCLVIQAQL--GDISAYRLLALCVTRIRE 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L     +     +   + +           +N +  + R ++ + +   L          
Sbjct: 255 LIMTKALVNRGQV---QTLPDLLHLPAWRVKNHVTWA-RGFSVSELHRALESARDTELAM 310

Query: 321 RKKKYLEKN 329
           +     E++
Sbjct: 311 KSGANPEES 319


>gi|319955262|ref|YP_004166529.1| DNA polymerase iii, delta subunit [Cellulophaga algicola DSM 14237]
 gi|319423922|gb|ADV51031.1| DNA polymerase III, delta subunit [Cellulophaga algicola DSM 14237]
          Length = 332

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 101/263 (38%), Gaps = 8/263 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I +L    + N+       F+ + L   ++   I    +      + +
Sbjct: 18  PIYFLMGEEAYYIDKLSEYIENNVLAEEERGFNQMTLYGKDVT--IDDIISNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++I+++      + +D L           +++I  K  ++ K   + K  +K    + 
Sbjct: 76  EHQVIIVKEAQHLSRSIDNLAAYAENPQPTTVLVICYKYAKLDKRKKVYKAVQKA--GVL 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  + D I + L      I+ +A  +L+  LG D     NEL+KL     +  
Sbjct: 134 FESKKLYENQVADWIRKVLAGSGYGITPKAAILLVEFLGTDLSKINNELEKLKLVIPKTE 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL--QK 257
            IT Q +++ I  +      E+  A  +  +  A  + ++F  +   +  +L   L    
Sbjct: 194 EITPQAIEENIGISKDYNNFELKKALGERNVMKATRILNYFAQNPKDNPFILTITLLNSF 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280
           F  L + H +K+ +  +   ++ 
Sbjct: 254 FTQLLQYHGLKDHNPKTVASVLG 276


>gi|301066376|ref|YP_003788399.1| DNA polymerase III subunit delta [Lactobacillus casei str. Zhang]
 gi|300438783|gb|ADK18549.1| DNA polymerase III, delta subuni [Lactobacillus casei str. Zhang]
          Length = 347

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L  +       ++        +    +    Q  +    N+  S   F 
Sbjct: 17  PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             + ++I++   L+ EK        L  L+      + + +++I +   ++ +   L K 
Sbjct: 74  DYREVVIDDPYFLTGEKNADKVDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   ++  +    ++      + ++    Q +I   A   L+    G       E++K
Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L +Y  +   +T   V+ ++       + +++   ++     A+ L    LA +     L
Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L +F+LL ++ ++      S   I    +    P +  +    +       +    
Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336
             +      A K   ++K + F+  +
Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333


>gi|171057172|ref|YP_001789521.1| DNA polymerase III subunit delta [Leptothrix cholodnii SP-6]
 gi|170774617|gb|ACB32756.1| DNA polymerase III, delta subunit [Leptothrix cholodnii SP-6]
          Length = 362

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 100/298 (33%), Gaps = 14/298 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ +G +  L  E  +  +       H   S+  +       + S    E  + SLF
Sbjct: 17  RPLYVIHGDEPLLAQEAADLIRAAARKAGHTERSVYTVAGAHF--DWSGLLGEAQALSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV- 137
           + K++I I        K   + L+  +     ++I +I    + +               
Sbjct: 75  ADKRLIEIRIPGGKPGKDGSEALQRYVETLSDDNITLIVLPRLDRTQLASAWFTALDGAG 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISK-----EAKQILLANLGGDRIASRNELQKLS 192
            ++   P  +  L   I + L   Q+ +                + G+ +A+  E+ KL 
Sbjct: 135 ASVRVDPIERRALPQWIAQRLAAQQQRVEDGEPGQRCLAFFADCIEGNLLAAHQEISKLG 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                  ++T + V+  + +     + ++  + + G++  A+ + +   A    +  +  
Sbjct: 195 L-LHPPGVLTFEQVEGAVLNVARYDVFKLGESVLAGQVARALRMLEGLQAEGEAAVLVHW 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
              +  + L ++    +        + +     +   K  + +  +   +   + E +
Sbjct: 254 TLSEDLRSLARVQAALQQGRPLPMALREARVWGV---KEKLFERIVPGLSTERLAELI 308


>gi|116494815|ref|YP_806549.1| DNA polymerase III, delta subunit [Lactobacillus casei ATCC 334]
 gi|191638325|ref|YP_001987491.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus casei
           BL23]
 gi|116104965|gb|ABJ70107.1| DNA polymerase III, delta subunit [Lactobacillus casei ATCC 334]
 gi|190712627|emb|CAQ66633.1| DNA-directed DNA polymerase III, delta chain [Lactobacillus casei
           BL23]
 gi|327382351|gb|AEA53827.1| DNA polymerase III subunit delta [Lactobacillus casei LC2W]
 gi|327385552|gb|AEA57026.1| DNA polymerase III subunit delta [Lactobacillus casei BD-II]
          Length = 347

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L  +       ++        +    +    Q  +    N+  S   F 
Sbjct: 17  PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             + ++I++   L+ EK        L  L+      + + +++I +   ++ +   L K 
Sbjct: 74  DYREVVIDDPYFLTGEKNADKIDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   ++  +    ++      + ++    Q +I   A   L+    G       E++K
Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L +Y  +   +T   V+ ++       + +++   ++     A+ L    LA +     L
Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L +F+LL ++ ++      S   I    +    P +  +    +       +    
Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336
             +      A K   ++K + F+  +
Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333


>gi|254432354|ref|ZP_05046057.1| DNA polymerase III, delta subunit [Cyanobium sp. PCC 7001]
 gi|197626807|gb|EDY39366.1| DNA polymerase III, delta subunit [Cyanobium sp. PCC 7001]
          Length = 337

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/328 (11%), Positives = 105/328 (32%), Gaps = 25/328 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D+      +      +        +L  L+  +I +       E  +    S
Sbjct: 2   PIHLLWGDDEAARGRRVEVLIAELVDPAWAAINLSRLDGQDIAQ-AGRALEEARTPPFGS 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--------- 128
             +++L++          ++ +  E  +     +  +++  N  K +  LR         
Sbjct: 61  GARLVLLQRSPFCNQCPAELAEPFEATLPLIPSDCHLVLV-NAAKPDGRLRTTKALQRLV 119

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K  E       +    D    +  L+  +       +   A + L   +G D     +EL
Sbjct: 120 KAGEAEEQAFQLPAIWDGAGQVE-LVHRTARELGLQLEPGAAEALSEAIGNDSARLASEL 178

Query: 189 QKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +KL  +         +   I  + V+ ++       +  + +A ++G+   AI L D  L
Sbjct: 179 EKLQLFGQGAAAQAGQAEAIGVEAVRALVGGHSTSAL-AVGDALLEGQPVAAIALVDSLL 237

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
               P+  ++     + +    + ++ +        I +       P +  ++++ ++  
Sbjct: 238 EGGEPALRIVAALTSQIRGWLWVALLDQRGERDVAVIAKAAGIG-NPKRIYVMRKQIQGR 296

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKN 329
                   L ++       ++       
Sbjct: 297 PAGRFLSLLSQLLDVEAALKRGTDPGDA 324


>gi|300703053|ref|YP_003744655.1| DNA-directed DNA polymerase subunit delta [Ralstonia solanacearum
           CFBP2957]
 gi|299070716|emb|CBJ42011.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 358

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 122/338 (36%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E+++  ++           ++ +         S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEVVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  +++ +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|87309275|ref|ZP_01091411.1| hypothetical protein DSM3645_21769 [Blastopirellula marina DSM
           3645]
 gi|87287914|gb|EAQ79812.1| hypothetical protein DSM3645_21769 [Blastopirellula marina DSM
           3645]
          Length = 368

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 123/334 (36%), Gaps = 31/334 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK-- 82
           I YG +  L    + Q ++ +     +   +  L+            +E+ + SLF    
Sbjct: 23  IVYGREALLARLALQQVRQTVVGVDEEDVPIARLDGKTAAWR--DVIDEVGTVSLFGGGS 80

Query: 83  KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +++++++       +    LE+   K   + ++++      KN  L K  +   + L + 
Sbjct: 81  RRLVILDGADDFVTRYRAELEKYADKPKRSGVLVLVVENWPKNTKLFKKLD--QTGLQVD 138

Query: 142 CY-----------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           C            PD K     +I+ +       + ++A ++++  +G +      +L +
Sbjct: 139 CNLPEKKAGKRNVPDAKALHDWMIKWAKKSHGIKLERDAAEMMVELIGPELGLIDQDLAR 198

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS Y      +  + V+D++    +  I ++++A ++G+    +   D           L
Sbjct: 199 LSLYVEPGGKVGAELVRDVVGGLRMKAIWDLVDAAVEGRTAGVLDDLDRLFQMGERPQKL 258

Query: 251 LHGF---LQKFQLLEKI--HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN--- 302
                  L+++    +I     +     S    +        P   +  QE L+      
Sbjct: 259 YGQIAWSLRRYAAAARIYQRAQRIGEAKSLRNALADAGFPNWPKALDEAQERLKRLGSIR 318

Query: 303 KNLVRETLHKIDHRI-----HLARKKKYLEKNII 331
              + + L ++D  +     H AR +  LEK ++
Sbjct: 319 AGRLFQQLLRLDLSLKGTHSHDARGRLALEKLLV 352


>gi|290476193|ref|YP_003469093.1| DNA polymerase III subunit delta, probably ATP hydrolase
           [Xenorhabdus bovienii SS-2004]
 gi|289175526|emb|CBJ82329.1| DNA polymerase III, delta subunit, probably ATP hydrolase
           [Xenorhabdus bovienii SS-2004]
          Length = 346

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 119/314 (37%), Gaps = 29/314 (9%)

Query: 21  HFVFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L+ E    I +  +      H  FSL      +        ++   S 
Sbjct: 18  RNNYLLWGNEPLLLQESQDSIRRVAEQHGFLEHFTFSLDNHTEWD------EIFSLCQSL 71

Query: 78  SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLFS ++   +L+        +++ L ++      + ++I+      + + L K  E   
Sbjct: 72  SLFSSRQSLTLLLPENGPNAAMVERLTKLSGLLHADILLIL------RGHKLTKAQENSP 125

Query: 136 -------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                  + + +SC    +  L   + +       S+  EA Q+L     G+ +A    L
Sbjct: 126 WFKTLGQNGVYVSCLTPEQNRLPQWVAQRARSMGLSLEDEANQLLCYCYEGNLLALAQAL 185

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           ++LS     D  +T   V++ + D         ++A + GKI  A  +          S 
Sbjct: 186 ERLSL-LHPDNRLTLPRVEEAVNDAAHFAPYHWVDALLAGKIKRAWHILKQLRQEDTESI 244

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            LL    ++  LL  +   ++      + +  + +  I   +R++L  +L+  ++  ++ 
Sbjct: 245 ILLRTIQRELILLLTLK--RQDKTTPLKTLFDQHK--IWQNRRSLLTAALQRLSQQDLQS 300

Query: 309 TLHKIDHRIHLARK 322
            +H +       ++
Sbjct: 301 AIHLLTQMELCVKQ 314


>gi|207721579|ref|YP_002252018.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum
           MolK2]
 gi|206586740|emb|CAQ17325.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum
           MolK2]
          Length = 358

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 121/338 (35%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E ++  ++           ++ +         S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  +++ +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|293552883|ref|ZP_06673541.1| DNA polymerase III, delta subunit [Enterococcus faecium E1039]
 gi|291603017|gb|EFF33211.1| DNA polymerase III, delta subunit [Enterococcus faecium E1039]
          Length = 344

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 134/334 (40%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L + + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTDYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K   ++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KAAIIINVQ--QLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|126700091|ref|YP_001088988.1| hypothetical protein CD2474 [Clostridium difficile 630]
 gi|260684055|ref|YP_003215340.1| hypothetical protein CD196_2320 [Clostridium difficile CD196]
 gi|260687715|ref|YP_003218849.1| hypothetical protein CDR20291_2367 [Clostridium difficile R20291]
 gi|115251528|emb|CAJ69361.1| putative DNA polymerase III, delta subunit [Clostridium difficile]
 gi|260210218|emb|CBA64446.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213732|emb|CBE05635.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 330

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 128/309 (41%), Gaps = 24/309 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++FYG +  LI   I  FK +++    D F+L +++  EI  N     + I +      
Sbjct: 1   MYLFYGREYYLIENAIKAFKDSLNEGMLD-FNLDIIDGKEIVLN--QLISSIETLPFMDD 57

Query: 83  KKIILIEN----LSTEKKVLDCLEEIIIKNICN-----HIIIIKSNEIKKNNTLRKIAEK 133
           +KI++I++       +K   D  E+ +I+++ N      I+ +   ++ K  +L K    
Sbjct: 58  RKIVIIKDFELLKGKKKNFTDSDEKYLIEHLDNIPDTTTIVFVVYGDVDKRKSLVKKI-- 115

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------SRN 186
             + +   C   + + L   I++S  +    I        +   G  D+ +        N
Sbjct: 116 GNNGIVFDCDKLSDMDLFKWIKKSFALNDVIIDNSQIMYFIEQEGYRDKSSEKTLSDLEN 175

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E+ K+SS+  +   +T   +  +        I ++I+   +    NA+ + +  +     
Sbjct: 176 EINKISSFVGKGNNVTNDVIDKLSQKKVENDIFKLIDYIGEQNASNAMKILNDMIQEGES 235

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +     ++F+++ ++    +    S + I  K + +   + + +  +  + ++ +++
Sbjct: 236 VLGIFSMIARQFKIIMQVR-QLQLDGYSTKLIADKLKMHQFVVGKAL--KQTKNFSDDII 292

Query: 307 RETLHKIDH 315
            E L+ I  
Sbjct: 293 VEILNYILE 301


>gi|257784606|ref|YP_003179823.1| DNA polymerase III, delta subunit [Atopobium parvulum DSM 20469]
 gi|257473113|gb|ACV51232.1| DNA polymerase III, delta subunit [Atopobium parvulum DSM 20469]
          Length = 323

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 79/226 (34%), Gaps = 7/226 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN--ISTFWNEINSTSLF 80
            ++  G D+ L           +    +  F    L+ + +       +  + + +  + 
Sbjct: 10  AYLAVGPDE-LKRARA---IDKLKSRLNQSFITFNLDEISVSAELTPESVLSSVQTLPMG 65

Query: 81  SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             ++I++I++     K V + L E +        +++ +  + K+  L K  +    +  
Sbjct: 66  DFRRIVVIDDAGKLPKPVSEALIEYLKNPNPTTTLMLSAKTLAKSTRLYKAVDALGKLAI 125

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+C    +  L   + +        I   A   L++ +G +     ++++ L+S      
Sbjct: 126 INCGAIARNELPKYVWDLGQKYGLQIPTNAANELISRVGDNTTMLDSQIKSLASLLGHTG 185

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            I    V+  +     +   + +++     +  A+ L      S  
Sbjct: 186 SIDIHFVETHVARVVEVKPWDFLDSISARNVQKAMELYSQMDESGA 231


>gi|304413510|ref|ZP_07394983.1| DNA polymerase III delta subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284353|gb|EFL92746.1| DNA polymerase III delta subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 343

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 118/317 (37%), Gaps = 16/317 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLN 59
           M  I   +  ++    L   H  ++F G+D  L  E             + + F++    
Sbjct: 1   MIRIYPQQLARQLNAGL---HGCYLFCGNDPLLRQESQESLHHAAQQHNFSEYFNIT--- 54

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117
            L+   +    ++   S SLF+ ++I+ +          +   L +++     + ++I+ 
Sbjct: 55  -LDAHTDWEAIFSICQSLSLFASRQILSLTFPETGLSALMSQQLIKLVTLLHPDILLILG 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K     +  +    + + ++C   +   L   +       +  + + A  +L   
Sbjct: 114 INKLIKTQENSQWYKALSQNAVLVNCQTPDHTQLPRWMNTRAKKMKLEVDEAAILLLCDC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    LQ LS  C  D  +T   V+  + ++        ++A + G       +
Sbjct: 174 YEGNLLALSQALQTLSL-CYPDGKLTLPRVEQAVHNSACFTPYHWLDAVLAGSRQRTWHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                  +     LL    ++  LL  +    + + ++    +   + ++   +RN L +
Sbjct: 233 LKKLQQEEDTPVILLRILQRELLLLTTLKRQMKQTGLT----VLFEQYHVWQNRRNALTQ 288

Query: 297 SLRIWNKNLVRETLHKI 313
           +L+  +   + + +H +
Sbjct: 289 ALQRLSIQQIYQAIHLL 305


>gi|294338593|emb|CAZ86922.1| putative DNA polymerase III, delta subunit [Thiomonas sp. 3As]
          Length = 363

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 19/299 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L+ E ++  +        D      +       + S         SLF  
Sbjct: 19  LYVVYGDETLLVNEAVDAIRARARQQGFDERESHTVERGF---DWSHLLAGSREISLFGG 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +++I   I      +   + L  +      + + ++    +                 +A
Sbjct: 76  RRLIELRIPGGKPGRDGGEALAALADHLSADVMAVVILPRLDAATQKSAWFSALSQGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSSY 194
           +         L   I   L     ++      +     L+A + G+ +A+  E++KL+  
Sbjct: 136 VRVDSVELAQLPRWIAARLQRHGFTLPASDAGRALTDFLVARVEGNLLAAHQEIEKLALL 195

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           C     +    V+  + +     + ++  A + G +     + D   A  +    +    
Sbjct: 196 C-PPGPLDPDTVEQAVLNVARYSVFKLGEAVLGGDVARLRRMLDGLQAEGVAPVLVHWTL 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNKNLVRETLH 311
               +   +I        +   + +    +   I  +K  +L+ +L       +   L 
Sbjct: 255 ADDIRAWLRIR-----QGLDAGQALPALLRANRIWGVKEKLLERALPRLRTPDLERLLQ 308


>gi|291557846|emb|CBL34963.1| DNA polymerase III, delta subunit [Eubacterium siraeum V10Sc8a]
          Length = 360

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 114/332 (34%), Gaps = 19/332 (5%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YG ++ L+    ++          +  +L+ L        + T  + I+S  LF+  K 
Sbjct: 33  LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSIPLFADSKA 89

Query: 86  ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136
           +LI +L  EK     ++ +   +        +II     + ++KK  N  L     K  +
Sbjct: 90  VLISDLDLEKFDDNGIEIILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                        + +LI +        IS+   Q +      D   +  E  KL SY  
Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRTDAQHIAELTLCDLSLASTETDKLCSYA- 208

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + +  +        I  +    ++G    A+++ D  +A K+    +L     
Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLIAQKIEPVVILAALSS 268

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313
            +    +     + +  S ++            +  ++ ++   +   +   +R  L  +
Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +     +      + ++ +TI+ ++    + 
Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKSRR 357


>gi|120436660|ref|YP_862346.1| DNA polymerase III subunit delta [Gramella forsetii KT0803]
 gi|117578810|emb|CAL67279.1| DNA polymerase III subunit delta [Gramella forsetii KT0803]
          Length = 334

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 116/326 (35%), Gaps = 27/326 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  ++NI       F+ +++   +    I    +      + +
Sbjct: 18  PIYFLMGEEAYYIDKISDFIEENILSEEERGFNQMLIYGRDTS--IDEVVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           ++++++++      + ++ L +         +++I  K  +I K   L K  +K   +  
Sbjct: 76  ERQVVILKEAQDLSRSIEKLVDYAENPQPTTVLVICYKYKKIDKRKKLYKSIDKSGVIF- 134

Query: 140 ISCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                     L      D I  +L     SIS +A Q+L+  LG D     NEL+KL   
Sbjct: 135 ------EGKRLYENQVGDWITRNLKSRGYSISPKASQMLVEFLGTDLGKIDNELEKLQLI 188

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           C     IT + +++ I  +      E+  A  +     A  + ++F  +    P    + 
Sbjct: 189 CKPGTTITPEIIEENIGISKDFNNFELRKAIGEKDSLKAHRIVNYFSQNPKDNPMVVTIS 248

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH 311
                F  + + H +   ++ S   + ++ +              + R +    V   + 
Sbjct: 249 LLFSYFSQILQYHGL---NDKSKGVVAKQLKVSPYFVSD---YVSAARNYPMKKVSHAIS 302

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILY 337
            +       + K     NI    +L 
Sbjct: 303 LLQET--DVKSKGVGATNIAQGDLLK 326


>gi|150390807|ref|YP_001320856.1| DNA polymerase III, delta subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950669|gb|ABR49197.1| DNA polymerase III, delta subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 346

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 113/306 (36%), Gaps = 23/306 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L+  +  + KK +  +  +  +       +I   +    +   +    +
Sbjct: 17  NLYLLYGEESYLMENIAQKLKKKVVSSGFEELNFSYFEGKDIT--VEKLIDACETLPFMA 74

Query: 82  KKKIILIENLS---TEKKVLDCLEE------IIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           ++K++LI+N      ++K +  +EE      I        ++   +  +     + K  +
Sbjct: 75  EEKLVLIKNFDAFQGKRKSISEVEEEELIHYIAKLPRTTCLVFYGTTSVDSRKKIVKAVK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL---GGDRIASR---- 185
           K           +  + L   I + L    K+I +    +L ANL   G +   S     
Sbjct: 135 KHGKHYEFQKLKE--LELEKWISKKLKQATKTIERRELSLLTANLDYLGRNTNQSLYDVD 192

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ KL ++  ++  +   H++ I+ +     I ++++A        A+      +    
Sbjct: 193 NEINKLVAFMGKEERVIHTHIEAIMTNNLQNDIFKLLDAIGNRNGREALRRLHQMVTEGE 252

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           P   +L     + + +  I ++ E     +   +   + ++ P   +  ++  R +    
Sbjct: 253 PIMRVLFTMSNQIKNILSIKLLVEDG---YSSKMAADKISVHPYVASKCEQQSRGFRIEA 309

Query: 306 VRETLH 311
           +   + 
Sbjct: 310 LIRIMQ 315


>gi|330828601|ref|YP_004391553.1| DNA polymerase III subunit delta [Aeromonas veronii B565]
 gi|328803737|gb|AEB48936.1| DNA polymerase III, delta subunit [Aeromonas veronii B565]
          Length = 345

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 109/301 (36%), Gaps = 12/301 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ +G +  L  E I+  ++       D     V+       + +  ++   + SLF
Sbjct: 17  RPCYLVFGDEPLLRLEAIDAIRQVARKQGFDERHTFVVEQG---LDWNQVYDACQAMSLF 73

Query: 81  SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           S ++II +E  +  +K +   + EI  +   + ++++    + +        +K   +  
Sbjct: 74  SARQIIELELPAKVDKDLAARISEIGKQLHPDLLLVLSGGRLNQTQMKAAWFDKLYQIGT 133

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +             +             +A   +  +  G+ +A+  E++KL+      
Sbjct: 134 YVPVNHPEPKFFPRWMSARFARFGLKALPDAINFMCHSYEGNLLAASQEIEKLTLLSPPQ 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I+  ++++ I         ++++  ++GK+  A  +     A       L     ++ 
Sbjct: 194 P-ISVTYLQETIIRHAHFTPFQLVDTLLEGKVNRAQRILAALRAEGTEPGMLAWTLCREL 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKIDH 315
           + L ++ +    +     +   +    I   ++ ++Q++L          + + + ++D 
Sbjct: 253 EQLTELSLAM-RNGQPLGEHFSRLR--IWQSRQQLIQQALTRLPFAKLQQLWQLMAQLDD 309

Query: 316 R 316
            
Sbjct: 310 A 310


>gi|325955583|ref|YP_004239243.1| DNA polymerase III subunit delta [Weeksella virosa DSM 16922]
 gi|323438201|gb|ADX68665.1| DNA polymerase III, delta subunit [Weeksella virosa DSM 16922]
          Length = 336

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 101/264 (38%), Gaps = 16/264 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I EL    +KN+       F+  ++   ++  ++    +      + +
Sbjct: 18  PIYFLAGEEPYYIDELTEALEKNVLTEDEKAFNQTIVYGQDV--DMEQLISLAKQYPMGA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSVLA 139
           +K++I+++      + +D L         + +++       I K   + K  +K  +   
Sbjct: 76  EKQLIIVKEAQHLAREIDKLLPYAENPQSSTVLVFNFKGKTIDKRLKIAKTLQKLNA--- 132

Query: 140 ISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
              Y +     +  + D I++ +L     I  +AK +L   +G +     NE++KL+   
Sbjct: 133 ---YHEFKKIYESKIPDWIDQRVLKSGVKIDMKAKMLLAEFVGANLSRLDNEIEKLALII 189

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHG 253
            +   IT   ++  I  +      E+  A I   +     +  +F  +  + P    +  
Sbjct: 190 GKGNTITPDQIERNIGISKDYNNFELRTAIINKDMPKIASIIHYFDKNPKENPIIVTISA 249

Query: 254 FLQKFQLLEKIHIIKECSNISFEK 277
               FQ L  +H +++ S  +  K
Sbjct: 250 IFNLFQSLVILHTLEDKSPSNAAK 273


>gi|296134647|ref|YP_003641889.1| DNA polymerase III, delta subunit [Thiomonas intermedia K12]
 gi|295794769|gb|ADG29559.1| DNA polymerase III, delta subunit [Thiomonas intermedia K12]
          Length = 363

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 19/299 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L+ E ++  +        D      +       + S         SLF  
Sbjct: 19  LYVVYGDETLLVNEAVDAIRARARQQGFDERESHTVERGF---DWSHLLAGSREISLFGG 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           +++I   I      +   + L  +      + + ++    +                 +A
Sbjct: 76  RRLIELRIPGGKPGRDGGEALAALSGHLSPDVMAVVILPRLDAATQKSAWFSALSQGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSSY 194
           +         L   I   L     ++      +     L+A + G+ +A+  E++KL+  
Sbjct: 136 VRVDSVELAQLPRWIAARLQRHGFTLPAGDAGRALTDFLVARVEGNLLAAHQEIEKLALL 195

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           C     +    V+  + +     + ++  A + G +     + D   A  +    +    
Sbjct: 196 C-PPGPLDPDTVEQAVLNVARYSVFKLGEAVLGGDVARLRRMLDGLQAEGVAPVLVHWTL 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNKNLVRETLH 311
               +   +I        +   + +    +   I  +K  +L+ +L       +   L 
Sbjct: 255 ADDIRAWLRIR-----QGLDAGQALPALLRANRIWGVKEKLLERALPRLRTPDLERLLQ 308


>gi|255531157|ref|YP_003091529.1| DNA polymerase III subunit delta [Pedobacter heparinus DSM 2366]
 gi|255344141|gb|ACU03467.1| DNA polymerase III, delta subunit [Pedobacter heparinus DSM 2366]
          Length = 341

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 109/315 (34%), Gaps = 28/315 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +   I ++I+  +++I       F+  VL   +   +++T  N      + S
Sbjct: 17  PIYLLHGEEPYYIDQIIHYMEEHILNDMEKGFNQTVLYGKDT--DMATIMNAAKRYPMMS 74

Query: 82  KKKII---------LIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130
             ++I           +      K  + +     K + + I+++  K     K   + K 
Sbjct: 75  DYQLIVVKEAQDLKWAKETEGSSKQAEFVLNYFEKPLPSTILVLGYKYANFDKRKKIYKA 134

Query: 131 AEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            +K      +    D      L   IEE +      I+ +A  ++   LG D     NE+
Sbjct: 135 IDKH----GVVFQSDLVRDYKLAQWIEELVKEKGYKIAPQASALMAEYLGADLSKIANEV 190

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMP 246
           +KL     ++ +I    V+  I  +    + E+  A     +     + ++F  +    P
Sbjct: 191 EKLLLNIGKETIIDTDIVQKNIGISKEYNVFELQKALAVKNVLKCNQIINYFGDNPKANP 250

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++      F  + K H +    + + E  +               + + R ++    
Sbjct: 251 MVMVMANLSAYFTKILKYHYLPNKGDAAKELGVN----PYFVKD---FETAARSYSLPKT 303

Query: 307 RETLHKIDHRIHLAR 321
            + +  +      ++
Sbjct: 304 FDIISLLREYDLKSK 318


>gi|126664121|ref|ZP_01735114.1| hypothetical protein FBBAL38_10844 [Flavobacteria bacterium BAL38]
 gi|126623835|gb|EAZ94530.1| hypothetical protein FBBAL38_10844 [Flavobacteria bacterium BAL38]
          Length = 334

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 111/305 (36%), Gaps = 15/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F G +   I +L    ++N+   +   F+  +L   ++               + +
Sbjct: 18  PIYFFMGEEPYYIDKLTEFIEQNVLQEHERDFNQSILYGRDVTM--EDVIGSAKRFPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKFTSVL 138
            ++++++       + +D LE    +N     +++ +     + K   + K+ +K   V 
Sbjct: 76  DRQVVIVREAQELSRTIDKLEAY-AENPQPTTVLVFAYKYKTLDKRKKVTKLLDKVGLVF 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                 DN+  + D I+  L     SI  +A  IL+  LG D     NEL KL     + 
Sbjct: 135 ESKKLYDNQ--VPDWIKRVLSGQGYSIEPKAAAILVEFLGTDLSKISNELDKLKIILPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGF-LQ 256
              T + +++ I  +      E+  A  +     A  + D F  + K     +  G    
Sbjct: 193 HTFTPKDIEENIGFSKDYNNFELRKAIGEKDQLKAYKIIDHFSQNPKDNPIVVTTGLVFG 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  L + H +K+ S  +  K+++              + + R +    V   +  +   
Sbjct: 253 FFSQLLQYHGLKDKSQFNAAKVLR--VNPYFVKD---YEVAFRNYPMKKVSAIVAALREI 307

Query: 317 IHLAR 321
              ++
Sbjct: 308 DVKSK 312


>gi|269468933|gb|EEZ80517.1| DNA polymerase III, delta subunit [uncultured SUP05 cluster
           bacterium]
          Length = 339

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 124/325 (38%), Gaps = 19/325 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G++  LI + ++Q  K       D  +   ++      N    + EI++ SLF  
Sbjct: 19  IYFVFGAEILLIEQSLSQINKFAKQAGFDEKTSFEIDGNF---NWDQIYAEISTPSLFCP 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KNNTLRKIAEKFTSV 137
           K+II   ++      K    L +II     + ++II + ++    + +   K  E+   V
Sbjct: 76  KRIIECRLKTGKIGVKGSKALNDIIKTLPNDILLIISTGKLDLAQQKSKWFKALEQHGGV 135

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I  +     HL+  +   +       + E  Q +     G+ +AS  E+QKL      
Sbjct: 136 --IQHWEVQSDHLVGWVANHMATLGLDSNPEIAQSIAFCTEGNLLASMQEIQKLQM-AYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  I  Q   D +       I  +I+  + G     + + +  +        L     ++
Sbjct: 193 DGKINTQEYLDQVNQQSKYTIYGLIDTALLGDGNQVLKIYETLIDDSAMPIQLSSSLYRE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKID 314
              +  + I  +      E ++Q     +   ++ I+  +L+  +   +++   +L +ID
Sbjct: 253 ISSIINMSIELQQV-KQVEAVLQNHR--VWNKRKPIISNALKRHSYQRLQKLLLSLGRID 309

Query: 315 HRIHLARKKKYLEKNIIFQTILYIA 339
             I        +++  +   +L +A
Sbjct: 310 RSIKGMDNLNVIDE--LRTLLLNLA 332


>gi|116074364|ref|ZP_01471626.1| hypothetical protein RS9916_37977 [Synechococcus sp. RS9916]
 gi|116069669|gb|EAU75421.1| hypothetical protein RS9916_37977 [Synechococcus sp. RS9916]
          Length = 334

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 111/326 (34%), Gaps = 26/326 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +F+G D   +   + +    +        +L  L+  +  + +     E  +     
Sbjct: 2   PVHLFWGDDSAALERAVGKLIDQVVDPTWSSINLSRLDGADSSQALQAL-EEARTPPFGG 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--------- 128
             +++L++      +    + D  +  +        +++ +   K +  LR         
Sbjct: 61  GDRLVLLQRSPFCNACPSDLADRFDNALDLIPDTSHLVLCNPA-KPDGRLRTTKALQQRI 119

Query: 129 ---KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
              + AE+   + AI     +      L++ +       +  +A   L+  +G D     
Sbjct: 120 KAKQAAEQSFQLPAIW----DGAGQRQLVQRTASDLNLDLEPDAIDALIDTIGSDSARLS 175

Query: 186 NELQKLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
            ELQKL+ +        I+   V  +I       ++ + +A ++G++  AI   D  + +
Sbjct: 176 AELQKLALHAASCGSTRISADAVATMIDGQATNALQ-VGDALLEGQVGEAISCLDALIDA 234

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
             P+  ++     + +    + ++++        I +       P +  ++++ L+    
Sbjct: 235 GEPALRIVATLTGQIRGWLWVSLMEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPP 293

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKN 329
                 L ++       ++       
Sbjct: 294 TRCLNLLGRLLEVEAALKRGAQPAAA 319


>gi|167749587|ref|ZP_02421714.1| hypothetical protein EUBSIR_00545 [Eubacterium siraeum DSM 15702]
 gi|167657441|gb|EDS01571.1| hypothetical protein EUBSIR_00545 [Eubacterium siraeum DSM 15702]
          Length = 360

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 19/332 (5%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YG ++ L+    ++          +  +L+ L        + T  + I+S  LF+  K 
Sbjct: 33  LYGEERFLVKTYTDRLLDATVGKDRNDINLIKLAGTF---PVDTLTDSIDSMPLFADSKA 89

Query: 86  ILIENLSTEK---KVLDCLEEIIIKNICNHIIII----KSNEIKK--NNTLRKIAEKFTS 136
           +LI +L  EK     ++ +   +        +II     + ++KK  N  L     K  +
Sbjct: 90  VLISDLDLEKFDDNGIETILNSLKDVPDECTVIISMTGNTEQLKKAKNKKLITALTKQKN 149

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                        + +LI +        IS+   Q +      D   +  E  KL SY  
Sbjct: 150 AAVCEFAHLTTARVTELIMKKAAKRGCVISRADAQHIAELTLCDLSLASAETDKLCSYA- 208

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT + +  +        I  +    ++G    A+++ D  L  K+    +L     
Sbjct: 209 GTGEITAEMIDKLTIKQLDTSIYSLATELLKGNRRQALLILDDLLTQKIEPVVILAALSS 268

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313
            +    +     + +  S ++            +  ++ ++   +   +   +R  L  +
Sbjct: 269 NYIDFYRAKT-AQGAGKSSQQTADDFGYAK--NRTFVVTKAMNLVSRLDTEHIRNCLDIL 325

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +     +      + ++ +TI+ ++    + 
Sbjct: 326 FNADLALKTSAINYRTVLEETIVKLSPEKIRR 357


>gi|293571936|ref|ZP_06682950.1| DNA polymerase III, delta subunit [Enterococcus faecium E980]
 gi|291607954|gb|EFF37262.1| DNA polymerase III, delta subunit [Enterococcus faecium E980]
          Length = 344

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRAEIVKKIKLESEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V+ ++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + +R +++ L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|251796208|ref|YP_003010939.1| DNA polymerase III subunit delta [Paenibacillus sp. JDR-2]
 gi|247543834|gb|ACT00853.1| DNA polymerase III, delta subunit [Paenibacillus sp. JDR-2]
          Length = 349

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 119/324 (36%), Gaps = 21/324 (6%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           +E+ + +++     F     ++ YG D+  I +      + +         +V  +  E 
Sbjct: 1   MEAKEALKEIKAGKF--RPAYVIYGKDRYRIGQFTETLTEAMFSPDERELGVVKFDTSET 58

Query: 64  QKNISTFWNEINSTSLFSKKKIILIEN----LSTEKKV------LDCLEEIIIKNICNH- 112
               +    E  +   F ++K++++ +     +  K+        D L+  +        
Sbjct: 59  LIEEAAL--EAETLPFFVERKLVIVRDSVVFAAGGKEGGKLDHKTDRLQHYLDIPSETTV 116

Query: 113 -IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
            + II + ++ +   L KI  K    L I+    +   L   + +     +++++ EA  
Sbjct: 117 MLFIINAEKLDERRKLVKIL-KDRDAL-IAFQELDAAELRRWVVKRAEEQKRTMTAEAAD 174

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           +LL   G +      E+ KL  +  E  +I  +  + +   T    +  +++A    ++ 
Sbjct: 175 LLLVRTGANMQQLAIEVDKLCLHAGEGGVIGVKETELLTASTVEEDVFALVDAIASLQVD 234

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
            ++ L    L  +     +     ++ +++ +I    E +  S +++  +    + P   
Sbjct: 235 RSLKLYRALLVRREEPIKIAALIARQLRIMLQIK-ELEQNRYSPQQMAGQIG--LHPYAV 291

Query: 292 NILQESLRIWNKNLVRETLHKIDH 315
            +  E  + +    +   L  I  
Sbjct: 292 KLAAEKSQKFKVARLGALLSDIAD 315


>gi|119775716|ref|YP_928456.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119768216|gb|ABM00787.1| DNA polymerase III, delta subunit [Shewanella amazonensis SB2B]
          Length = 342

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 98/290 (33%), Gaps = 10/290 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  +G D  LI     Q          +    +  +      +     NE  + SLF+ +
Sbjct: 19  YCLFGDDAWLIENARTQLLMAARQQGFEERISLEQDNGFNWND---LQNEWQALSLFASR 75

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LAI 140
           +II +              L  ++ +   + ++I++  ++    T  K  +   +V + +
Sbjct: 76  RIIELTLPQAKPGADGSAMLTSLMAQPNPDLLLILRGPKLAAEQTNSKWFKALDNVGIYL 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++  +   +  +  +A+Q+L     G+ +A+   +Q L+     +  
Sbjct: 136 PCNTPEGQQFFRWLDGRIAANRLMLDGDARQLLATLYEGNLLAAEQAVQLLAL-LAANRR 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+ + +     D     + ++ +A +  +      +     A       +L    ++   
Sbjct: 195 ISAEELSQYFDDQSRFNVFQLSDALLGNQQQRVAHILAQLKAEGTALPIVLWAVFRELAS 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L ++         S   +  K    I   ++ + + +L   +   +   L
Sbjct: 255 LLQLKTAM-VQRESLAPMWSKLR--IWDKRKPLYEAALSRLSLTQIEAML 301


>gi|261341261|ref|ZP_05969119.1| DNA polymerase III, delta subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316565|gb|EFC55503.1| DNA polymerase III, delta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 343

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 97/260 (37%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + +  ++   + SLF+ ++ I  L+        + + L  ++     + ++I++ N++ K
Sbjct: 60  DWNALFSVCQAMSLFASRQTIQLLLPENGPNAAINEQLATLVSLLHSDLLLIVRGNKLTK 119

Query: 124 NNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                    +  T+ + ++C    + HL   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWVTQLATNAVLVTCQTPEQAHLPKWVATRAKQHNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L +L+     D  +T   V+  + D         ++A +  K   A+ +      
Sbjct: 180 ALAQALDRLAL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLAAKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R +  E+++  +
Sbjct: 239 EGSEPVILLRTLQRELLLLITLK--RQSAHAPLRSLFDKHR--VWQNRRAMTTEAVQRLS 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 HEQLRQAVQLLMRAELTLKQ 314


>gi|83746763|ref|ZP_00943811.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551]
 gi|207744310|ref|YP_002260702.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum
           IPO1609]
 gi|83726532|gb|EAP73662.1| DNA polymerase III, delta subunit [Ralstonia solanacearum UW551]
 gi|206595715|emb|CAQ62642.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum
           IPO1609]
          Length = 358

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 121/338 (35%), Gaps = 24/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E ++  ++           ++ +         S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDALRQTARAQGFSERDVMTVERGFSW---SRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPPGPATDTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +      + A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEAGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        +++   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++++  +++ +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGSAQGKPMASMLRELR--VWGPRERLVPQAVQRLSQHDLEAA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           L    ++D ++   R+     +   +  +L +A    +
Sbjct: 315 LQMAARLDRQVKGLREPSLPAEP--WDGLLQLAMRIAR 350


>gi|314937545|ref|ZP_07844873.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a04]
 gi|314941463|ref|ZP_07848352.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133C]
 gi|314949643|ref|ZP_07852964.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0082]
 gi|314951825|ref|ZP_07854863.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133A]
 gi|314992770|ref|ZP_07858174.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133B]
 gi|314996527|ref|ZP_07861565.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a01]
 gi|313589313|gb|EFR68158.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a01]
 gi|313592703|gb|EFR71548.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133B]
 gi|313595999|gb|EFR74844.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133A]
 gi|313599715|gb|EFR78558.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133C]
 gi|313643088|gb|EFS07668.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0133a04]
 gi|313643982|gb|EFS08562.1| DNA polymerase III, delta subunit [Enterococcus faecium TX0082]
          Length = 348

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 23  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 80

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           +++ +EN   L+ EK      +  D L   + + + + +++  +   K +   RK   K 
Sbjct: 81  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 138

Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              + + I+    N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 139 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 198

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 199 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 258

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 259 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 315

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 316 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 348


>gi|73542517|ref|YP_297037.1| DNA polymerase III subunit delta [Ralstonia eutropha JMP134]
 gi|72119930|gb|AAZ62193.1| DNA polymerase III, delta subunit [Ralstonia eutropha JMP134]
          Length = 352

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 113/297 (38%), Gaps = 15/297 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E +++ ++         FS   +   E   + S       S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDRLRQTAREAG---FSERDVLVAERNFHWSQLVEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +KI+   I +    K+  + L  +  +   + ++++    +    +     +      +
Sbjct: 79  DRKIVELRIPSGKPGKEGGEALRAVAAQPSPDVVMLVTLPRLDFATSKSAWFQALEGAGV 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSS 193
           +I     ++  L   + E L + Q+ +      + A Q +   + G+ +A+  E+QKL  
Sbjct: 139 SIKVDSVDRTRLPAWVGERLALQQQRVEGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  +T   V D + +     + ++  A + G +   + + +        +  +L  
Sbjct: 199 -LYPTGELTFDQVHDAVLNVARYDVFKLSEAMLGGDVPRLVRMLEGLRGEGEATVLVLWA 257

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
             ++ ++L K+      +      ++++    +   +  ++ ++ +   +  +   L
Sbjct: 258 LTEEIRVLSKVR-QGIAAGKPAAVLMRELR--VWGARERLVPQAAQRLTQGKLDAAL 311


>gi|257791406|ref|YP_003182012.1| DNA polymerase III, delta subunit [Eggerthella lenta DSM 2243]
 gi|257475303|gb|ACV55623.1| DNA polymerase III, delta subunit [Eggerthella lenta DSM 2243]
          Length = 328

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 108/324 (33%), Gaps = 12/324 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D      ++ + +  +S      F+    +    Q          N+    S
Sbjct: 16  PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 73

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++ +      KK   + L   +     + ++ + + ++ KN  L K          I
Sbjct: 74  PVRLVEVRAADKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 133

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C P  +  L   +    +    ++++ A   L+  +G D +   +EL+K++        
Sbjct: 134 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 193

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           + E  + D++  T  +   E ++A     +   ++      +     HALL     + + 
Sbjct: 194 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 251

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L     + +  N    + +    K      +N +  + R +    +R  +          
Sbjct: 252 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 307

Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344
           +         +   +   A TA +
Sbjct: 308 KSGADPRSAFLDWVL---AVTARR 328


>gi|257896081|ref|ZP_05675734.1| DNA polymerase III subunit delta [Enterococcus faecium Com12]
 gi|293377497|ref|ZP_06623693.1| DNA polymerase III, delta subunit [Enterococcus faecium PC4.1]
 gi|257832646|gb|EEV59067.1| DNA polymerase III subunit delta [Enterococcus faecium Com12]
 gi|292643866|gb|EFF61980.1| DNA polymerase III, delta subunit [Enterococcus faecium PC4.1]
          Length = 344

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V+ ++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + +R +++ L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|251790540|ref|YP_003005261.1| DNA polymerase III subunit delta [Dickeya zeae Ech1591]
 gi|247539161|gb|ACT07782.1| DNA polymerase III, delta subunit [Dickeya zeae Ech1591]
          Length = 343

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 113/309 (36%), Gaps = 17/309 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L+ E    I    +      H  F+L      +   +    ++   + 
Sbjct: 18  RGCYLLFGNEPLLLQESQDHIRTIARQQDFLEHFSFTL------DNNTDWEAIFSTCQAL 71

Query: 78  SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134
           SLF+ ++  ++++ +        + L ++      + ++I++ N++ K        +   
Sbjct: 72  SLFASRQTLLLILPDAGPGAPAAEQLVKLATLLHSDILLIVRGNKLTKAQENSAWFKALS 131

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + + C    +  L   + +     +  + + + Q++     G+ +A    L++LS  
Sbjct: 132 QHGVYVPCMTPEQEQLPRWVAQRAKSMKLELDEASSQLVCYCYEGNMLALVQALERLSL- 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   V+  + D         ++A + GK   A  +             LL   
Sbjct: 191 LYPDGKLTLPRVEQAVNDAAHFTPYHWLDALLGGKSKRAWHILQQLRLEDCEPVILLRTV 250

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++  LL ++             ++ + +  I   +R +L ++L+  +   +++ +  + 
Sbjct: 251 QRELLLLLQLKRRMAT--TPLRTLLDQHK--IWQNRRPLLTQALQRLSAVQLQQAITLLS 306

Query: 315 HRIHLARKK 323
                 ++ 
Sbjct: 307 RLEITLKQN 315


>gi|304403911|ref|ZP_07385573.1| DNA polymerase III, delta subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304346889|gb|EFM12721.1| DNA polymerase III, delta subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 351

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 117/334 (35%), Gaps = 20/334 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN 75
           N      V++ YGSD+  I +  N     +         +V  +  E          E  
Sbjct: 11  NSGSVRPVYVAYGSDRYRIEQFANLMADKLFKPDERELGIVKFDTSETAI--EEAAAEAE 68

Query: 76  STSLFSKKKIILIENL---------STEKKVLDCLEEIII--KNICNHIIIIKSNEIKKN 124
           +   F ++K+I+I +          + E K+   +E ++    +  +  +I+     +K 
Sbjct: 69  TMPFFVERKLIMIRDASVLAAAGANAKEGKIEHRVERMLEYIDSPSDTTVILFLVYAEKL 128

Query: 125 NTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
           +  RK+ +K       I+    +   L   +        + ++++A  +L+A  G     
Sbjct: 129 DERRKLVKKLKDQNALIAFNELDGPELRRWVVRRASEQNRVMTEDAADLLIARTGNRLQQ 188

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E  KL  +   D  I  Q V+ +   T    +  +I+A    +   A+ L    L  
Sbjct: 189 LSQETDKLCLHAGVDGTIDTQSVELLTASTVEEDVFALIDAIASVQTSKALKLYRDLLQR 248

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
           +     +          L  +  +KE S   +      ++  + P +  +  E    ++ 
Sbjct: 249 REEPIKIAALLAV---QLRLMLQVKELSGQQYSPQQMASQLGVHPFRVKLASEKASKFSI 305

Query: 304 NLVRETLHKIDHRIHLAR-KKKYLEKNIIFQTIL 336
             + + L ++       R K   ++K +  +  L
Sbjct: 306 AGLSKQLGEL--AELDYRMKTGQIDKTLGVELFL 337


>gi|295398767|ref|ZP_06808776.1| DNA-directed DNA polymerase III delta subunit [Aerococcus viridans
           ATCC 11563]
 gi|294972981|gb|EFG48799.1| DNA-directed DNA polymerase III delta subunit [Aerococcus viridans
           ATCC 11563]
          Length = 344

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 117/303 (38%), Gaps = 18/303 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +  LI   +   +        D  ++  ++    + +++    E N+ S F+
Sbjct: 17  PIYVLQGPETYLINRFLTAIESQYLQ--EDANAMNYMSFDMEEDSLADVMVEANTISFFN 74

Query: 82  KKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKI 130
           + ++IL+   +           K+    L E +     + +++I +    +     + K 
Sbjct: 75  QPRLILMRQPAFLTGSQKKNAIKQDDASLLEYLDNPADDVVLVIVADYESLDGRKKIVKQ 134

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + +  S   + +  + D ++  +      +++EA  + L         S  E+ K
Sbjct: 135 LKKKATFVDTSVMAEPQ--VKDYMQRYVASEGVDMTREAMALFLKRTNFQLTQSIREMDK 192

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  ++  I ++ V  ++  +    I  + +  ++     A+ L    +A K    A+
Sbjct: 193 LILYVGDEKRINQRDVDLLVTPSLDDNIFHLTDHIMRQDSAAALRLYRELIAQKNQPIAI 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L      F+L  +I I  + +      + +     + P +  +  +S+  ++ NL+    
Sbjct: 253 LGLLQSNFRLYTQI-IQLKKAGYDQGSMAETIG--VHPYRIKMAGQSIHPYSPNLLMVGY 309

Query: 311 HKI 313
            K+
Sbjct: 310 MKL 312


>gi|170078176|ref|YP_001734814.1| DNA polymerase III subunit delta [Synechococcus sp. PCC 7002]
 gi|169885845|gb|ACA99558.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7002]
          Length = 326

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 131/328 (39%), Gaps = 17/328 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V+ F+G D   I + ++Q K+++       F+    +  + +  I    +E+ +      
Sbjct: 3   VYFFWGEDDFAIAQAVDQIKQSVLDPAWLSFNFQTYDGSKEESIIDAL-DEVMTPPFGMG 61

Query: 83  KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFTS 136
            ++I +       S    +L  L   +     +  +++ S + K +  L+  K  ++   
Sbjct: 62  GRLIWLNEATLCQSCSDSLLQELHRTLPVIPESSHLLMTSRK-KPDKRLKSTKFIQEHAK 120

Query: 137 V---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           V     I  +      L D ++ +      ++ + A ++L   +G D     NEL+KL  
Sbjct: 121 VWEFSPIPPWQTEA--LADRVKATARELGVNLDRPATELLGEAVGNDTRRLWNELEKLKI 178

Query: 194 YCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           Y       +T+  ++ ++  T+   ++ +  A  +G    AI L    LA   P+  ++ 
Sbjct: 179 YQGSRTQPLTKVEIQQLVAATNQNSLQ-LCEAIREGNGGLAIQLVGELLAQNEPALRIVA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             + +F++   I ++ E      ++ I K      P +   L++ +       + +TL  
Sbjct: 238 TLIGQFRMWTIIKVMIEAGERD-DQAIAKLADLKNPKRLYFLKKEISRLRGQQLLKTLPI 296

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQ 340
           +   +    K+  + + I+   IL + Q
Sbjct: 297 LLE-LEAGLKQGAIAEEILPTKILELCQ 323


>gi|329767197|ref|ZP_08258724.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328836864|gb|EGF86511.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 326

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 117/298 (39%), Gaps = 16/298 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +   I +      K       D F+ V +N  E    I T   E  S+ LF 
Sbjct: 3   NIYVIYGENFEAINDYEKSLAKKYLKEL-DEFNYVKINMHE--NTIETLVYECRSSGLFG 59

Query: 82  KKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            +K+++ EN    L+  KK+     +D L   +       ++I+K  + K ++  + I +
Sbjct: 60  NEKVVVAENCNFLLAKPKKIKVEHNVDALMNYLENINEEVVLILKIPD-KIDSRKKIIKK 118

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +         N+  + + I +++ +    ISK   + L+     D    + EL+KL 
Sbjct: 119 IKEAGEVKEFSNFNEKEISEYIVKTVAVHDMKISKVDAEFLVNYTRLDFANIKKELEKLL 178

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            YC E  +IT   ++ +   +    +  + N           ++ +  +  K     LL 
Sbjct: 179 LYCDEKKIITRDDIELLATRSLEYDVFSLTNELFGKNYAKLRVVYNSLVLKKEEPIFLLS 238

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               + ++  K+ ++        +   +     + P +  +  + +R ++ + + +TL
Sbjct: 239 LISGQLRMYYKVKVLLNEHYSQKDIAKELA---VHPYRVQLAAQGIRNYSVDKIMKTL 293


>gi|332878404|ref|ZP_08446127.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683669|gb|EGJ56543.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 336

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 105/307 (34%), Gaps = 16/307 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + N  +K++       F  +VL   ++   +    +      + +
Sbjct: 18  PIYFLMGEEPYFIDVVANYLEKHLLEEDQKGFDQLVLYGQDVT--VPAIIDYARRFPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           ++++I+I+     +  +D L   +     + +++   K  ++     L K   K    + 
Sbjct: 76  ERQLIIIKEAQNLRASIDQLVPYVENPTASTVLVFCYKYEKLDARKKLLKSLGKNQDCVV 135

Query: 140 ISC---YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +     Y      +   + +       SI  +A Q+L+  LG D     NE+ KL+    
Sbjct: 136 MESKKLY--ENQVISSFLPDVFKKKHLSIQPKATQMLVDFLGNDLSRIENEVNKLALIVP 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254
            +  +T   ++  I  +      E+ +A           +   F  +    P    L   
Sbjct: 194 ANTEVTPDIIEKNIGISKEFNNFELKSAFATNDKVKIARIIKHFAENPKDNPLVVTLTVL 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              FQ L   H + + S+ +    +    K      ++ L  + + +    V   +  + 
Sbjct: 254 YGFFQKLLIYHSLTDVSDKN----VMAATKATFFDVKD-LHSAAQHYPMKKVSAIMAGLR 308

Query: 315 HRIHLAR 321
                ++
Sbjct: 309 EIDVKSK 315


>gi|257878128|ref|ZP_05657781.1| DNA polymerase III subunit delta [Enterococcus faecium 1,230,933]
 gi|257881087|ref|ZP_05660740.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,502]
 gi|257889673|ref|ZP_05669326.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,410]
 gi|257892390|ref|ZP_05672043.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408]
 gi|260559176|ref|ZP_05831362.1| DNA polymerase III subunit delta [Enterococcus faecium C68]
 gi|293563908|ref|ZP_06678331.1| DNA polymerase III, delta subunit [Enterococcus faecium E1162]
 gi|294623509|ref|ZP_06702357.1| DNA polymerase III, delta subunit [Enterococcus faecium U0317]
 gi|257812356|gb|EEV41114.1| DNA polymerase III subunit delta [Enterococcus faecium 1,230,933]
 gi|257816745|gb|EEV44073.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,502]
 gi|257826033|gb|EEV52659.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,410]
 gi|257828769|gb|EEV55376.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,408]
 gi|260074933|gb|EEW63249.1| DNA polymerase III subunit delta [Enterococcus faecium C68]
 gi|291597103|gb|EFF28306.1| DNA polymerase III, delta subunit [Enterococcus faecium U0317]
 gi|291604141|gb|EFF33652.1| DNA polymerase III, delta subunit [Enterococcus faecium E1162]
          Length = 344

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           +++ +EN   L+ EK      +  D L   + + + + +++  +   K +   RK   K 
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 134

Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              + + I+    N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 135 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|227535189|ref|ZP_03965238.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187234|gb|EEI67301.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 347

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L  +       ++        +    +    Q  +    N+  S   F 
Sbjct: 17  PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             + ++I++   L+ EK        L  L+      + + +++I +   ++ +   L K 
Sbjct: 74  DYREVVIDDPYFLTGEKNADKVDHDLAGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   ++  +    ++      + ++    Q +I   A   L+    G       E++K
Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L +Y  +   +T   V+ ++       + +++   ++     A+ L    LA +     L
Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L +F+LL ++ ++      S   I    +    P +  +    +       +    
Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLAIAY 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336
             +      A K   ++K + F+  +
Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333


>gi|296103395|ref|YP_003613541.1| DNA polymerase III subunit delta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057854|gb|ADF62592.1| DNA polymerase III subunit delta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 343

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 103/293 (35%), Gaps = 15/293 (5%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI--ENLS 92
            E ++  +   +    D    V L+      + +  ++   + SLF+ ++ I I      
Sbjct: 32  QESLDAVRHAAAAQGFDEHHTVQLDN---NTDWNALFSLCQAMSLFASRQTIQILLPENG 88

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYPDNKIHLM 151
               + + L  ++     + ++I++ N++ K         +  T  + ++C    + HL 
Sbjct: 89  PNAAINEQLATLVSLLHSDLLLIVRGNKLTKAQENAAWFTQLATHAVLVTCQTPEQTHLP 148

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             +          +   A Q+L     G+ +A    L +L+     D  +T   V+  + 
Sbjct: 149 KWVAARAKQNNLQLDDAANQLLCYCYEGNLLALAQALDRLAL-LWPDGKLTLPRVEQAVN 207

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           D         ++A +  K   ++ +             LL    ++  +L  +       
Sbjct: 208 DAAHFTPFHWVDALLMAKSKRSLHILQQLRLEGSEPVILLRTLQRELLMLITL------K 261

Query: 272 NISFEKIIQKT-EKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
             S    ++   +K+ I   +R +  E++   +   +R+ +  +       ++
Sbjct: 262 RQSAHTPLRSLFDKHRIWQNRRAMTTEAINRLSHEQLRQAVQLLMRAELTLKQ 314


>gi|87123266|ref|ZP_01079117.1| hypothetical protein RS9917_05385 [Synechococcus sp. RS9917]
 gi|86168986|gb|EAQ70242.1| hypothetical protein RS9917_05385 [Synechococcus sp. RS9917]
          Length = 326

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 110/322 (34%), Gaps = 18/322 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D   +   IN    ++        +L  L+  E  + +     E  +     
Sbjct: 2   PIHLLWGDDSAALERAINSLIADVVDPAWSSINLSRLDGAETGQALQAL-EEARTPPFGG 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNI----CNHIIIIKS-----NEIKKNNTLRKIAE 132
             +++L++           L +           N  +++ +       ++    L+K+ +
Sbjct: 61  GGRVVLLQRSPFCNACPSELADRFESAPALIPDNSHLLLTNPSKPDGRLRTTKALQKLVK 120

Query: 133 KF---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                     +    D       L+E +    +  ++ +A   L+  +G D      ELQ
Sbjct: 121 AGLATEQGFQLPAVWDGAGQ-RQLVERTAAELKLQLAPDAIDALIEAIGNDSARLSMELQ 179

Query: 190 KLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           KL+ +        I+   +  +I       ++ + +A ++G +  AI   D  + +  P+
Sbjct: 180 KLALHAESSGANTISATAIAQLIDGQASNALQ-VGDALLEGAVGEAISRLDGLIEAGEPA 238

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             ++     + +    + ++++        I +       P +  ++++ L+    +   
Sbjct: 239 LRIVATLTGQIRGWLWVSLLEQQGERDVGVIAKAAGIG-NPKRIYVMRKQLKGRPPSRCL 297

Query: 308 ETLHKIDHRIHLARKKKYLEKN 329
           + L ++       ++  +    
Sbjct: 298 KLLGRLLDVEAALKRGAHPGDA 319


>gi|146310832|ref|YP_001175906.1| DNA polymerase III subunit delta [Enterobacter sp. 638]
 gi|145317708|gb|ABP59855.1| DNA polymerase III, delta subunit [Enterobacter sp. 638]
          Length = 343

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 101/288 (35%), Gaps = 14/288 (4%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEK 95
           + Q   +     H  F L      +   +  T ++   + SLF+ ++  +I +       
Sbjct: 38  VRQAAASQGFDEHHTFQL------DNSTDWQTIFSLCQAMSLFASRQTLLIQLPENGPNA 91

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLI 154
            + + L  ++     + ++I++ N++ K         +  T  + ++C    +  L   +
Sbjct: 92  AINEQLATLVSLLHPDLLLIVRGNKLTKAQENAAWFTQLATHSVQVTCQTPEQAQLSKWV 151

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
                     +   A Q+L     G+ +A    L +LS     D  +T   V+  + D  
Sbjct: 152 AVRAKQLNLQLDDAANQLLCYCYEGNLLALAQALDRLSL-LWPDGKLTLPRVEQAVNDAA 210

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274
                  ++A +  K   A+ +             LL    ++  LL  +   ++ +N  
Sbjct: 211 HFTPFHWVDALLAAKSKRALHILQQLRLEGSEPVILLRTIQRELLLLNTLK--RQSANTP 268

Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
              +  K    +   +R +  E++   +   +R+ +  +       ++
Sbjct: 269 LRALFDKHR--VWQNRRAMTTEAVNRLSHEQLRQAIQLLTRAELTLKQ 314


>gi|225012828|ref|ZP_03703262.1| DNA polymerase III, delta subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225003102|gb|EEG41078.1| DNA polymerase III, delta subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 333

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 103/325 (31%), Gaps = 20/325 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G++   I  + +     +       F   V    +     S          + +
Sbjct: 18  PFYLLSGTESYYIDAITDALVDQLVTEQSRDFDFTVFYGKD--AVTSEIIETAKRYPMVA 75

Query: 82  KKKIILIENLSTEKKVL-DCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFTSVLA 139
              +++I+          D     +       I++      + K+  L  +A +   VL 
Sbjct: 76  SYNLVIIKEAQAMHHSCWDDFILYLENPTPQTIVVFCFKNKEFKSKKLYNVAARVGEVLT 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +    +N+  L   I +       +IS +A  +L   +G +  A  N+L KL        
Sbjct: 136 VKPLFENQ--LSKWISDEAKKLNITISPDAAMLLSEYIGSNLSALHNQLLKLKLVVKNGD 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT  H++  +  +      E+  A   G++  A  +      +    P    L      
Sbjct: 194 TITPDHIEYYVGISKEFNSFELQKAIGLGQLSKAFQIVQHLNRNLKSHPMVLTLSTLHNY 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           FQ L  +  +   +N+     I               Q +   ++   + + +  +    
Sbjct: 254 FQKLLLLKGLSNSANLPRALGIN----PYFIRD---YQTAAARFSMKQITQAMRYVLDAD 306

Query: 318 HLAR----KKKYLEKNIIFQTILYI 338
             ++    K    ++ I+ + +L +
Sbjct: 307 LKSKGIIGKSSSPQQ-IMEELLLKL 330


>gi|294669474|ref|ZP_06734541.1| hypothetical protein NEIELOOT_01372 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308387|gb|EFE49630.1| hypothetical protein NEIELOOT_01372 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 333

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E +++ +       +    +   +      + +      NS  LF+
Sbjct: 17  PLYVIHGEEDLLRVEALDKLRAAAKQQGYLNREVYTADNAF---DWNEMLASANSMGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   + L  +      + + ++   +++K  T  K         +
Sbjct: 74  DLKLMEIHIPNGKPGKNGGEALLSLAENLPDDTVTVVMLPKLEKAQTQAKWFAAMARQGV 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     +   L   I+  L      I  +A  +    + G+ +A++ E+ KL+      
Sbjct: 134 VLEAKAVSGNALPAWIKGRLKNAGLDIEADALTLFAERVEGNLLAAKQEIDKLALLHPSG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            +I+    +  + +     + ++ +A ++G     + L +   A       LL    +  
Sbjct: 194 SIISVADAELAVANVARFDVFQLASAWMKGDAVRTLHLLEGLEAEGEEPVLLLWAVAEDI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 254 RTLIRLAAAF-KQGQSVQSVRNSLR 277


>gi|332883663|gb|EGK03943.1| DNA polymerase III, delta subunit [Dysgonomonas mossii DSM 22836]
          Length = 335

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 9/242 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V++F G +   I EL +   + +       F+  +L  +E   N++       S  + 
Sbjct: 17  RPVYLFMGDEPYYIDELTDMLTETVLPEEERDFNQSILYGMET--NVTAVITMARSYPMM 74

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSVL 138
           S  ++I+I+      K+ + LE  +   + + I+++      + K   L   AE      
Sbjct: 75  SDHQLIVIKEAQNLSKI-EELEVYVKNPLKSTILVLNYKGGSLDKRKKL--YAEIDKMGA 131

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197
                   +  +   I   +L    SI +++ Q+L   LG D     NE+ KL       
Sbjct: 132 IFESKKIPEYKIPAFITSYILSKGLSIDQKSAQMLSDYLGNDLSKLTNEIAKLLIAIQPG 191

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
            + IT   +++ I  +      E++NA I   I+    +AD+F  + K     +    L 
Sbjct: 192 QMRITADLIEENIGISKDFNNFELLNAIINKNIFKVNQIADYFEKNPKNNPMIMTMSVLF 251

Query: 257 KF 258
            F
Sbjct: 252 NF 253


>gi|257898717|ref|ZP_05678370.1| DNA polymerase III subunit delta [Enterococcus faecium Com15]
 gi|257836629|gb|EEV61703.1| DNA polymerase III subunit delta [Enterococcus faecium Com15]
          Length = 344

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRAEIVKKIKLEGGDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V+ ++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + +R +++ L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|254416533|ref|ZP_05030285.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196176737|gb|EDX71749.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 326

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 117/311 (37%), Gaps = 16/311 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G +   + + IN+ ++++       F+   +   +    I    N+  +     
Sbjct: 2   PIYLYWGDNDFALTQAINELRQSVLDPNWLSFNYDRIPPDQPDAVIQGL-NQAMTPPFGM 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
             + + + +     +  + VL  L   +       I++  S       +K    L+K A 
Sbjct: 61  GGRFVWLVDTNVCQTCSENVLAELGRTLPAIPPESILLFTSHNRPDGRLKSTKLLQKHA- 119

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K      I  +   +  L+  ++         ++  A ++L   +G +     NEL KL 
Sbjct: 120 KIREFPLIPPWKTEE--LVQQVKSYAQTTGVKLTPLAAELLADAVGNNTRQLTNELDKLR 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y  ++   + E+ V  ++  T    ++ +  + ++G  + A+ L    + +      ++
Sbjct: 178 LYAGDETTSLDERAVSALVTTTTHNSLQ-LAGSILKGDTHKALGLIADLINNNEHPLRIV 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F+    + ++         K+I    +   P +   L++ ++  + + +  TL 
Sbjct: 237 ATLVGQFRTWLWVKLMMSEGEKDI-KVIANAAEVGNPKRIYFLKKDVQHLSLDQLMATLR 295

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 296 VLLELEVSLKR 306


>gi|317490546|ref|ZP_07949023.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|316910361|gb|EFV31993.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
          Length = 325

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 108/324 (33%), Gaps = 12/324 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D      ++ + +  +S      F+    +    Q          N+    S
Sbjct: 13  PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 70

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++ +      KK   + L   +     + ++ + + ++ KN  L K          I
Sbjct: 71  PVRLVEVRAADKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 130

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C P  +  L   +    +    ++++ A   L+  +G D +   +EL+K++        
Sbjct: 131 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 190

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           + E  + D++  T  +   E ++A     +   ++      +     HALL     + + 
Sbjct: 191 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L     + +  N    + +    K      +N +  + R +    +R  +          
Sbjct: 249 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 304

Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344
           +         +   +   A TA +
Sbjct: 305 KSGADPRSAFLDWVL---AVTARR 325


>gi|260364646|ref|ZP_05777245.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus K5030]
 gi|308111013|gb|EFO48553.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus K5030]
          Length = 298

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 102/266 (38%), Gaps = 10/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           A++   + +  ++   + SLFS +++I +E         +   L+ +      + +++I 
Sbjct: 12  AVDASLDWNQVYDCFQALSLFSSRQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVII 71

Query: 118 SNEIKKNNTLRKIAEKFTSVLA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
             ++ K     K   K  +     +SC   +   L   ++           +++ Q+L  
Sbjct: 72  GTKLTKAQENAKWF-KALNAKGDWVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQ 130

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
              G+  A    L+KL+     D  +T   +++ +   +       I+A + GK   A  
Sbjct: 131 WHEGNLFALSQSLEKLAL-LYPDGELTVVRLEEALSRHNHFTTFNWIDALLAGKANRAQR 189

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           +     A  + +  L+    ++F  L  +H  ++ + +   ++ +K    +   KR +  
Sbjct: 190 ILRQLEAEGIETVILIRSVQKEFNQLLSMH--QDLTQMPISQVFEKYR--VWQNKRPLYN 245

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321
            +L   + + +   +  +      A+
Sbjct: 246 AALMRLSASRICALISLLAQAEIKAK 271


>gi|86148571|ref|ZP_01066856.1| DNA polymerase III subunit delta [Vibrio sp. MED222]
 gi|85833637|gb|EAQ51810.1| DNA polymerase III subunit delta [Vibrio sp. MED222]
          Length = 341

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  L+ E     +K         F      A++   + +  ++   + SLFS
Sbjct: 18  NVYLIFGNEPLLLQESREAIQKTAKEQG---FEERHRFAIDSSLDWNQVYDCTQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138
            +++I +E         +   L  +      + ++I+   ++ K     K  +  ++   
Sbjct: 75  SRQLIELELPESGVNAAIAKELLALSEHIHSDILLILVGTKLTKAQESAKWFKALSNQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC   +   L   ++        S   EA Q+L     G+  A    L+KL+     D
Sbjct: 135 WISCLTPDVSRLPQFVQTRCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +        +A + GK   A  +     A  +    LL    ++ 
Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
            LL +  + ++   +   ++ +K    I   K+ +   +L   + + +      +     
Sbjct: 254 ALLLQ--MQQQMKQMPIAQVFEKHR--IWQSKKPLYNAALTRVSISQLHSLFALLTQVEL 309

Query: 319 LAR 321
           + +
Sbjct: 310 MTK 312


>gi|333030681|ref|ZP_08458742.1| DNA polymerase III, delta subunit [Bacteroides coprosuis DSM 18011]
 gi|332741278|gb|EGJ71760.1| DNA polymerase III, delta subunit [Bacteroides coprosuis DSM 18011]
          Length = 339

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 13/279 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I  + +  ++ +       F+L VL   +I  ++ST  N      + S
Sbjct: 22  PVYYLMGEESYYIDLISDTLEEKVLTEEEKEFNLTVLYGADI--DVSTIINAAKRYPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++++++     + + D L   + K + + I++I  K  ++     L    E     + 
Sbjct: 80  EHQVVIVKEAQQIRNM-DQLSYYLQKPLLSTILVICHKHGKLDGRKKLGS--EIAKIGVL 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-D 198
                     L+  I+  +   Q +I  +A  +L   +G D     +EL KL        
Sbjct: 137 FESKALKDRDLIGFIDSYIQRKQFTIEPKASAMLADFIGADLSRLTSELDKLILTTGGKQ 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL-Q 256
             IT   V+  I  +      E+ NA +   ++    +  +F  + K     +  G L  
Sbjct: 197 KRITPDLVEKNIGISKSYNNFELRNALLDRDVFRVNQIVHYFEENPKTNPLPMTLGLLFS 256

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            F  L   +   + S+    +++           ++ ++
Sbjct: 257 YFSNLMLAYYSPDKSDRGIAEMLSLRTP---WQAKDYIK 292


>gi|313668812|ref|YP_004049096.1| DNA polymerase III, delta subunit [Neisseria lactamica ST-640]
 gi|313006274|emb|CBN87737.1| putative DNA polymerase III, delta subunit [Neisseria lactamica
           020-06]
          Length = 332

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 96/293 (32%), Gaps = 11/293 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ +G ++ L  E ++  +       +    +   +A     + +       S  LF+ 
Sbjct: 17  LYVIHGEEELLRIEALDALRAAAKEQGYLNREVYTADASF---DWNELLQTAGSAGLFAD 73

Query: 83  KKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
            K++   I N    K   + L++   +   + + ++   +++K     K           
Sbjct: 74  LKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGEV 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
               P     L   I   L      I  +A  +    + G+ +A+R E+ KL     +  
Sbjct: 134 WEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKGH 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T    +  + +       ++  A ++G +     L D           LL    +  +
Sbjct: 194 TLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDIR 253

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311
            L ++         S + +        +   +  L   +++  +   + + L 
Sbjct: 254 TLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302


>gi|295096607|emb|CBK85697.1| DNA polymerase III, delta subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 343

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + +  ++   + SLF+ ++ I I          + + L  ++     + ++I++ N++ K
Sbjct: 60  DWNAIFSLCQAMSLFASRQTIQILLPENGPNAAINEQLAMLVSLLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                    +   S + ++C    + HL   +          + + A Q+L     G+ +
Sbjct: 120 AQENAAWFTRLAPSAVLVTCQTPEQAHLPKWVAARAKQHNLQLDEAASQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L +L+     D  +T   V+  + D         ++A +  K   A+ +      
Sbjct: 180 ALAQALDRLAL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLSAKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R +  E++   +
Sbjct: 239 EGSEPVILLRTLQRELLLLNNLK--RQSAHTPLRALFDKHR--VWQNRRAMTTEAINRLS 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
           +  +R+ +  +       ++
Sbjct: 295 QEQLRQAVQLLMRAELTLKQ 314


>gi|239631590|ref|ZP_04674621.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526055|gb|EEQ65056.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 347

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L  +       ++        +    +    Q  +    N+  S   F 
Sbjct: 17  PLTLILGEESAL-RQQAQHAIASMIPEDQQAMNFGRYDMQ--QTPVGAALNDATSMPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
             + ++I++   L+ EK        L  L+      + + +++I +   ++ +   L K 
Sbjct: 74  DYREVVIDDPYFLTGEKNADKVDHDLVGLQAYFENPVPSTMMVIIAPYKKLDERKRLTKA 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   ++  +    ++      + ++    Q +I   A   L+    G       E++K
Sbjct: 134 LKKAALIVNAAPL--DEREARAALAQTFKKHQVTIDAPALDTLVQRTNGQYSIMMGEVRK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L +Y  +   +T   V+ ++       + +++   ++     A+ L    LA +     L
Sbjct: 192 LLTYASDGSPLTVAAVEALVPKQLNDRVFDLVTDVLRKNAAAALALYRDLLAQREEPIRL 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
               L +F+LL ++ ++      S   I    +    P +  +    +       +    
Sbjct: 252 NALMLGQFRLLLQVKLLA-KKGYSQGDIAGTLKA--HPYRVKLAMRQVDRLPYQQLATAY 308

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTIL 336
             +      A K   ++K + F+  +
Sbjct: 309 SGLVDTE-TAMKTGTIDKALAFELFM 333


>gi|261207710|ref|ZP_05922395.1| DNA polymerase III subunit delta [Enterococcus faecium TC 6]
 gi|289566286|ref|ZP_06446717.1| DNA polymerase III, delta subunit [Enterococcus faecium D344SRF]
 gi|294615860|ref|ZP_06695702.1| DNA polymerase III, delta subunit [Enterococcus faecium E1636]
 gi|260078093|gb|EEW65799.1| DNA polymerase III subunit delta [Enterococcus faecium TC 6]
 gi|289161926|gb|EFD09795.1| DNA polymerase III, delta subunit [Enterococcus faecium D344SRF]
 gi|291591246|gb|EFF22913.1| DNA polymerase III, delta subunit [Enterococcus faecium E1636]
          Length = 344

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 133/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K   ++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|307151185|ref|YP_003886569.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7822]
 gi|306981413|gb|ADN13294.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7822]
          Length = 326

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 120/318 (37%), Gaps = 16/318 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++F+G D   I + + + ++++       F+   L     +  I    N+  +    S
Sbjct: 2   PIYLFWGEDDFAITQEVERLRQDVLDPSWIQFNYDKLAGDAAENVIEGL-NQAMTPVFGS 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135
             +++ +   +      + +L  L+  +        ++  S++ K +  L+  K+ E++ 
Sbjct: 61  GGRLVWLVETTIFGQCSEGLLSELQRTLPHIPEESHLLFTSSK-KPDKRLKSTKLVEEYA 119

Query: 136 SV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
            V     I  +   +  ++  ++         ++  A  +L  ++G +     +EL KLS
Sbjct: 120 KVQEFALIPPWKTEE--IVQRVQSVAHSKGVKLTAAAVDLLAESVGNNTRQLWSELDKLS 177

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y         ++V   + + +     ++  A  +G    A+ L    ++   P+  ++ 
Sbjct: 178 VY--GQGKPINENVVASLVNVNTQNSLQLATAIREGDAAKALSLVADLISRNEPALRIVA 235

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             + +F+    + +  E      EK I    +   P +   L++ ++ +  + +  TL  
Sbjct: 236 TLVGQFRTWAMVKLKIEAGEKD-EKAIATAAEVGNPKRIYFLRKEVQAFKGSQLLATLPL 294

Query: 313 IDHRIHLARKKKYLEKNI 330
           +       ++       +
Sbjct: 295 LFELELSLKRGADPLAAL 312


>gi|294617295|ref|ZP_06696936.1| DNA polymerase III, delta subunit [Enterococcus faecium E1679]
 gi|291596452|gb|EFF27704.1| DNA polymerase III, delta subunit [Enterococcus faecium E1679]
          Length = 344

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 133/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + I++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTILVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K   ++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|329770384|ref|ZP_08261766.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328836507|gb|EGF86167.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 326

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 122/301 (40%), Gaps = 22/301 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISIT---YHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            ++I YG +    FE IN F+K ++       D F+ +  N  +    I     E  S+ 
Sbjct: 3   NIYIVYGEN----FEAINDFEKKVAQNYLKTLDEFNYIKFNMNDTT--IENLVYECRSSG 56

Query: 79  LFSKKKIILIEN----LSTEKKV-----LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
           LF  +K+++ EN    L+  KK+     ++ L   +       I+I+KSNE K ++  + 
Sbjct: 57  LFGNEKVVVAENCNFLLAKPKKLKVDHNIEVLSNYLENISSEVILILKSNE-KIDSRKKI 115

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + +             N+  + D I E++      ISKE  Q L+     D    + E++
Sbjct: 116 VKKIKEIGEIKEFSNFNETQIADYIVEAVKEKNLKISKENAQFLVNYTRLDFANIKREIE 175

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  YC    +I    ++ +   +    +  + N            + +  +  K     
Sbjct: 176 KLVLYCQGKSVIERNDIELLAVRSLEYDVFSLTNELFSRNYIKLREVYNSLVLKKEEPIF 235

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L      + +L  K+ ++ +  + S ++I ++    I P +  +  + +R ++   +  +
Sbjct: 236 LFSLISGQLRLYYKVKVLLD-EHYSQKQIAKELG--IHPYRVQLAAQGIRNYSVEKIMRS 292

Query: 310 L 310
           L
Sbjct: 293 L 293


>gi|167571239|ref|ZP_02364113.1| DNA polymerase III subunit delta [Burkholderia oklahomensis C6786]
          Length = 333

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF  
Sbjct: 19  LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K   D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALLNAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKVDPVDRAQLPNWIGQRLALQGQRVAPGEDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + ++D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGTLTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L KI      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLKIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|302335765|ref|YP_003800972.1| DNA polymerase III, delta subunit [Olsenella uli DSM 7084]
 gi|301319605|gb|ADK68092.1| DNA polymerase III, delta subunit [Olsenella uli DSM 7084]
          Length = 322

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 95/256 (37%), Gaps = 9/256 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN--ISTFWNEINSTSL 79
             ++  GSD+    + + + K ++        +   L+    + +   +     +N+  +
Sbjct: 10  PAYLVVGSDELKSRQAVTRLKGHLDAGL----AAFNLDERAAKADMVPADIVASLNTLPV 65

Query: 80  FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +  +++L+EN     K   + +   +       ++ + ++ + K+  L K  +      
Sbjct: 66  GNGFRLVLVENAERLPKAASEAIVAYLRDPNPACVLCLVASSLAKSTRLYKAVKSAGERT 125

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            + C P  +  L   +          + +EA + L++ +G        +++ L++ C E 
Sbjct: 126 IVDCTPKKRWELAPTVGRMAARYGMRMGEEAARELVSRVGESTTLLDTQVKTLAALCRET 185

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   V+  +  T  +   + ++A        A++L    +  K    ALL     + 
Sbjct: 186 GAITLSDVEAHVARTAEVKPWDFLDAVSARDGRKALVLYT--MMRKPSQVALLSLLTGRL 243

Query: 259 QLLEKIHIIKECSNIS 274
           + L     + E    S
Sbjct: 244 RELICARALDERGEGS 259


>gi|261400389|ref|ZP_05986514.1| DNA polymerase III, delta subunit [Neisseria lactamica ATCC 23970]
 gi|269209827|gb|EEZ76282.1| DNA polymerase III, delta subunit [Neisseria lactamica ATCC 23970]
          Length = 332

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 96/294 (32%), Gaps = 11/294 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +  ++      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTVDNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T    +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDI 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311
           + L ++         S + +        +   +  L   +++  +   + + L 
Sbjct: 253 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302


>gi|257887585|ref|ZP_05667238.1| DNA polymerase III subunit delta [Enterococcus faecium 1,141,733]
 gi|257823639|gb|EEV50571.1| DNA polymerase III subunit delta [Enterococcus faecium 1,141,733]
          Length = 344

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 132/334 (39%), Gaps = 19/334 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRAEIVKKIKLEGEDDLNF--LSFDMENASLEEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTATIINVQ--QLNEKEVRQYLMNTLENSSIKMERNAIDLFLRLTDLDLSKMMRELQKLI 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V+ ++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEQLVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + +R +++ L+ +   +
Sbjct: 255 ILLSQLRLFLQAKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVRKFDEQLLVQLFDQ 311

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           +    +   K   +EK + FQ  +       +N 
Sbjct: 312 LVEMDYQI-KTGQIEKELSFQLFVLRTGQLLRNR 344


>gi|229815192|ref|ZP_04445528.1| hypothetical protein COLINT_02238 [Collinsella intestinalis DSM
           13280]
 gi|229809202|gb|EEP44968.1| hypothetical protein COLINT_02238 [Collinsella intestinalis DSM
           13280]
          Length = 323

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 115/293 (39%), Gaps = 15/293 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSL 79
             ++  GSD+      I + K  +  +    F+   L+  ++ K+         +N+  +
Sbjct: 6   PGYLVVGSDELKSSHTIEKMKARLDASGMAAFN---LDERDMAKDPQIDDIIASLNTFPM 62

Query: 80  FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            S+ +++++ N     K V + L E         + ++ +  + KN  L K   K  +  
Sbjct: 63  GSEFRLVILRNCDKLPKAVSEPLVEYFANPSPTTVCLVVATTLAKNTRLYKAIAKLGAKA 122

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC P     L   + +      K++   A + L++  G +     NEL+KL+S   + 
Sbjct: 123 VISCAPMKAYELPPRVAKMAQAHGKAMGIPAAEALVSRAGENMRMLDNELKKLASMI-DG 181

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLASKMPSHALLHGFLQK 257
             IT   V+  +  T  +   E++NA     +  ++ L       S++   +LL   L++
Sbjct: 182 PEITLADVERHVMRTAEVKPWELLNAVAARDLTRSLELLKLQPAKSEVRIWSLLVTRLRE 241

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
             + + +    +   ++    +Q          +N    + R W  + + E L
Sbjct: 242 LIIAKSLDARGQAGQLASALGVQT------WQVKNHASWA-RRWKMDELLEAL 287


>gi|53720544|ref|YP_109530.1| DNA polymerase III subunit delta [Burkholderia pseudomallei K96243]
 gi|53725691|ref|YP_103998.1| DNA polymerase III subunit delta [Burkholderia mallei ATCC 23344]
 gi|67643537|ref|ZP_00442282.1| DNA polymerase III, delta subunit [Burkholderia mallei GB8 horse 4]
 gi|76811330|ref|YP_334820.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 1710b]
 gi|121601131|ref|YP_991718.1| DNA polymerase III subunit delta [Burkholderia mallei SAVP1]
 gi|124384588|ref|YP_001027211.1| DNA polymerase III subunit delta [Burkholderia mallei NCTC 10229]
 gi|126440520|ref|YP_001060424.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 668]
 gi|126448597|ref|YP_001082163.1| DNA polymerase III subunit delta [Burkholderia mallei NCTC 10247]
 gi|126454183|ref|YP_001067685.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 1106a]
 gi|134280284|ref|ZP_01766995.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 305]
 gi|166998530|ref|ZP_02264388.1| DNA polymerase III, delta subunit [Burkholderia mallei PRL-20]
 gi|167912539|ref|ZP_02499630.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 112]
 gi|226196843|ref|ZP_03792422.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813815|ref|YP_002898266.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|242316710|ref|ZP_04815726.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106b]
 gi|254178765|ref|ZP_04885419.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 10399]
 gi|254180645|ref|ZP_04887243.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1655]
 gi|254190922|ref|ZP_04897428.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199042|ref|ZP_04905457.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei S13]
 gi|254202717|ref|ZP_04909080.1| DNA polymerase III, delta subunit [Burkholderia mallei FMH]
 gi|254208058|ref|ZP_04914408.1| DNA polymerase III, delta subunit [Burkholderia mallei JHU]
 gi|254258135|ref|ZP_04949189.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710a]
 gi|254299269|ref|ZP_04966719.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 406e]
 gi|52210958|emb|CAH36946.1| putative DNA polymerase III [Burkholderia pseudomallei K96243]
 gi|52429114|gb|AAU49707.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 23344]
 gi|76580783|gb|ABA50258.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710b]
 gi|121229941|gb|ABM52459.1| DNA polymerase III, delta subunit [Burkholderia mallei SAVP1]
 gi|124292608|gb|ABN01877.1| DNA polymerase III, delta subunit [Burkholderia mallei NCTC 10229]
 gi|126220013|gb|ABN83519.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 668]
 gi|126227825|gb|ABN91365.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106a]
 gi|126241467|gb|ABO04560.1| DNA polymerase III, delta subunit [Burkholderia mallei NCTC 10247]
 gi|134248291|gb|EBA48374.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 305]
 gi|147746964|gb|EDK54041.1| DNA polymerase III, delta subunit [Burkholderia mallei FMH]
 gi|147751952|gb|EDK59019.1| DNA polymerase III, delta subunit [Burkholderia mallei JHU]
 gi|157808973|gb|EDO86143.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 406e]
 gi|157938596|gb|EDO94266.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694679|gb|EDP84687.1| DNA polymerase III, delta subunit [Burkholderia mallei ATCC 10399]
 gi|169656872|gb|EDS88269.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei S13]
 gi|184211184|gb|EDU08227.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1655]
 gi|225931103|gb|EEH27111.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504072|gb|ACQ96390.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238524905|gb|EEP88335.1| DNA polymerase III, delta subunit [Burkholderia mallei GB8 horse 4]
 gi|242139949|gb|EES26351.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1106b]
 gi|243065215|gb|EES47401.1| DNA polymerase III, delta subunit [Burkholderia mallei PRL-20]
 gi|254216824|gb|EET06208.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 1710a]
          Length = 362

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 129/349 (36%), Gaps = 27/349 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L    
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHALAFAA 311

Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351
           ++D ++          AR +   +  + +FQ  + +A+ A    +  +R
Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARAAGPGGDAPRR 360


>gi|325133778|gb|EGC56434.1| DNA polymerase III, delta subunit [Neisseria meningitidis M13399]
          Length = 332

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 86/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNGLR 276


>gi|15613900|ref|NP_242203.1| DNA polymerase III subunit delta [Bacillus halodurans C-125]
 gi|10173953|dbj|BAB05056.1| BH1337 [Bacillus halodurans C-125]
          Length = 342

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 103/272 (37%), Gaps = 17/272 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+  YG++  L+ +LI               ++   +  ++   I     E  +   F 
Sbjct: 17  PVYFMYGTELFLMEDLIQDILSVTLSDEERDMNVSSYSLTDV--PIEAALEEAETVPFFG 74

Query: 82  KKKIILIENLSTEKKV-------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
            K+++++++ +            +  LE+ I+  +   +++I +   ++ +   + K+ +
Sbjct: 75  SKRVVILKDAALFTSQKLDVEHDVKRLEQYILNPVPETVLLIMAPYEKLDERKKITKLIK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K +  L +   P ++      +       Q  + ++A + LL   G       +E+ KL+
Sbjct: 135 KES--LVLEAKPLDEGEAKAWLSSLASELQVEMDEKAIETLLGMTGLRLTQLASEMNKLA 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  E  +I  + V  ++  T    I ++I+  I  + + A+ L    L  K     LL 
Sbjct: 193 LYVGEGGIIRSEDVTLLVAKTLDQNIFDLIDFAINQRTHQALSLYHELLKQKEEPLKLLA 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
              ++F    +I    +          Q  + 
Sbjct: 253 LLTRQF----RIMYQVKELGRRGYTPNQMAKP 280


>gi|255525336|ref|ZP_05392276.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7]
 gi|296188204|ref|ZP_06856596.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7]
 gi|255511008|gb|EET87308.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7]
 gi|296047330|gb|EFG86772.1| DNA polymerase III, delta subunit [Clostridium carboxidivorans P7]
          Length = 340

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 103/271 (38%), Gaps = 14/271 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  ++F G D+ L+ + IN     +        + V  +   ++       N   +    
Sbjct: 17  NNCYLFCGIDEQLMKDGINSIINKVLDKTFMDLNYVKFDGSTLESF-EPVVNACETLPFM 75

Query: 81  SKKKIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAE 132
           S KK++L+             V + + E         I+I    ++   K++   +KI +
Sbjct: 76  SDKKVVLVYRANFFQEDKNDNVFNRIYEYASNLPDYCILIFY--DVFKSKRDKPGKKIYK 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQKL 191
                  +         L   I+       K I +   ++    +   +     NE++KL
Sbjct: 134 LDKRACVVKADKIKGQQLEGKIKSFFEARGKQIGRIELKVFSTLMDENNLNIIENEVEKL 193

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             Y  E   IT++ +K++   ++   I +++N   Q K+  AI + +  +        +L
Sbjct: 194 CCYTYEKS-ITKEDIKELFLKSNDDDIFDLVNPISQKKVKEAIEVLNELIYRGEKIPYIL 252

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           +   ++F  L ++ ++ E    + + I+++ 
Sbjct: 253 NMIERQFNRLFRVKMLLENK-KNKQDIMKEL 282


>gi|172056812|ref|YP_001813272.1| DNA polymerase III, delta subunit [Exiguobacterium sibiricum
           255-15]
 gi|171989333|gb|ACB60255.1| DNA polymerase III, delta subunit [Exiguobacterium sibiricum
           255-15]
          Length = 333

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 112/304 (36%), Gaps = 23/304 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG+++ L+ E   +  K         F  + ++  +  + +    +E  +    S
Sbjct: 13  NLYLLYGTERHLLEEWEREIVKAALPDGER-FDYMKIDLND--QPLDAVLDEAETVPFLS 69

Query: 82  KKKIILIENL-----STEKKV--LDCLEEIIIKNICNHII--IIKSNEIKKNNTLRKIAE 132
             ++++ +       + +KK   ++ L E I++     ++  I+++ ++ +  T+ K   
Sbjct: 70  DYRVVIAKPATFLTGAKDKKTHNVERLAEYIVQPADYAVVVLIVEAEKLDERKTIVKRL- 128

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                + +         L   + +++      + + A + L+   G        EL KL 
Sbjct: 129 -KDRAVILEAKKPTTEELFRFVMDAVNDKGYRMERPAIERLIFLTGEMWATLTRELDKLM 187

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y  +   I  + V  ++  T    + ++ +  ++ ++  AI L            ALL 
Sbjct: 188 LYAGDHPTIELEDVNLLVPRTLEDNVFQLTDYLMKRQLEPAIRLIRDLEKQGQEVLALLG 247

Query: 253 GFLQKFQLLEKIHIIKE---CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
              ++++++     + E          K+         P    +  ++ + +    + + 
Sbjct: 248 LMARQYRMMLLSKRLAEQGYGERQIASKVGA------HPYAIKLALQAGKRFTFAQLEQA 301

Query: 310 LHKI 313
           L  I
Sbjct: 302 LVAI 305


>gi|187930049|ref|YP_001900536.1| DNA polymerase III subunit delta [Ralstonia pickettii 12J]
 gi|187726939|gb|ACD28104.1| DNA polymerase III, delta subunit [Ralstonia pickettii 12J]
          Length = 358

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 122/341 (35%), Gaps = 24/341 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E ++  ++         FS   + ++E   + S       S SLF 
Sbjct: 22  PLYVVHGDEHLLALETVDALRQAARAQG---FSEREVMSVERGFSWSRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTLTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +        A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        ++T   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++ +  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           L    K+D ++   R+     +   +  +L +A    +  +
Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353


>gi|325831512|ref|ZP_08164766.1| DNA polymerase III, delta subunit [Eggerthella sp. HGA1]
 gi|325486766|gb|EGC89214.1| DNA polymerase III, delta subunit [Eggerthella sp. HGA1]
          Length = 325

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 109/324 (33%), Gaps = 12/324 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D      ++ + +  +S      F+    +    Q          N+    S
Sbjct: 13  PVYLIVGEDALKRDTVMKRLRARLSSMGDLSFNADEFDGETAQG--GDIVTACNTVPFAS 70

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++ +  +   KK   + L   +     + ++ + + ++ KN  L K          I
Sbjct: 71  PVRLVEVRAVDKLKKADAEQLVSYLGSPNGSTVLALVAEKLAKNTRLYKAVAACGKTAVI 130

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C P  +  L   +    +    ++++ A   L+  +G D +   +EL+K++        
Sbjct: 131 DCAPLKRYELPRTVRSMAVTHGVTLTEGAAVKLVDLVGEDTVHLDSELKKIALAHRGTDA 190

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           + E  + D++  T  +   E ++A     +   ++      +     HALL     + + 
Sbjct: 191 VNEHEIVDMVSRTAEVKPWEFVDAFAARDVRKCLLYLGRMDSV--SPHALLAMCTTRLRE 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L     + +  N    + +    K      +N +  + R +    +R  +          
Sbjct: 249 LVCARSMADRGNP---RGVAAALKAPDWRVKNHVNWA-RGFTAAELRRAIISSRDTERAM 304

Query: 321 RKKKYLEKNIIFQTILYIAQTACK 344
           +         +   +   A TA +
Sbjct: 305 KSGADPRSAFLDWVL---AVTARR 325


>gi|322613221|gb|EFY10164.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621289|gb|EFY18146.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623709|gb|EFY20547.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628981|gb|EFY25760.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631703|gb|EFY28457.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637561|gb|EFY34263.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641901|gb|EFY38531.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646745|gb|EFY43251.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651446|gb|EFY47826.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653103|gb|EFY49437.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658823|gb|EFY55078.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664907|gb|EFY61100.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668909|gb|EFY65061.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670585|gb|EFY66718.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675326|gb|EFY71402.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682203|gb|EFY78228.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684968|gb|EFY80965.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193974|gb|EFZ79176.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197934|gb|EFZ83056.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202019|gb|EFZ87079.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207152|gb|EFZ92105.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213971|gb|EFZ98738.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214321|gb|EFZ99072.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219274|gb|EGA03765.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225515|gb|EGA09745.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231074|gb|EGA15190.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234094|gb|EGA18183.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238211|gb|EGA22269.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242555|gb|EGA26579.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248468|gb|EGA32402.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251317|gb|EGA35189.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259245|gb|EGA42888.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261652|gb|EGA45227.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264834|gb|EGA48335.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272329|gb|EGA55736.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 343

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 97/260 (37%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL  F ++  LL  +   ++ +++    +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTFQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|220910039|ref|YP_002485350.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7425]
 gi|219866650|gb|ACL46989.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7425]
          Length = 328

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 115/302 (38%), Gaps = 20/302 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ F+G D   + + + Q +  +       F+   ++  +    +    N+  +    +
Sbjct: 2   PVYFFWGEDDYRLNQAVQQLRDRLLDPVWASFNYDKISPEQPDAILQGL-NQSMTPPFGA 60

Query: 82  KKKIILIENLSTEKK----VLDCLEEIIIKNICNHIIIIKSNEIKKNNT------LRKIA 131
             ++I + N +  ++    +L  LE  +     +  +++ S   K +        L+K  
Sbjct: 61  ADRLIWLVNTTLGQRCSEELLAELERTLPHLPSSSHLLLTSPS-KPDGRSKAVKLLQKYG 119

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           E     L I  +      L+ +  ++      S++ +A  +L+ ++G D     +EL+KL
Sbjct: 120 EIKEFSL-IPAWKTE--DLLQVARQAAQQIGVSLAPDALDLLVQSVGNDTRQLYSELEKL 176

Query: 192 SSYCLEDIL---ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             Y         +T   V  ++  T    ++ +  A   G    A+ L    +A   P  
Sbjct: 177 QLYAARQPQPQPLTRLEVSTLVRTTSQNSLQ-LAEAIRLGHTGKALELLADLIAQNEPPL 235

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L+    ++F+    + ++ E      + I +  E    P +   LQ+ ++  +   ++ 
Sbjct: 236 RLVATLTRQFRTWLWVKVLTEAGERDLQTIARLAEVG-NPKRIYFLQKEVQPLSSAQLQR 294

Query: 309 TL 310
            L
Sbjct: 295 VL 296


>gi|153953527|ref|YP_001394292.1| DNA polymerase III subunit delta [Clostridium kluyveri DSM 555]
 gi|219854149|ref|YP_002471271.1| hypothetical protein CKR_0806 [Clostridium kluyveri NBRC 12016]
 gi|146346408|gb|EDK32944.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567873|dbj|BAH05857.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 344

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 18/268 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSK 82
           ++F G D+ +I E I +  +    T    F+ +  +   ++  +     N   +    S 
Sbjct: 20  YLFCGIDEFIIKENIRKLVQKSIKTDFADFNYIKFDGSSLESFDP--VINACETLPFMSD 77

Query: 83  KKIILIENLS------TEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           KK++L+   +        K  L      ++  +     + I+I+      K + + K   
Sbjct: 78  KKVVLVYRAAFIGDEQNGKSKLSYEFNSIQNYLKNVPEHCILILYYLFKNKRDKISKKIY 137

Query: 133 KFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQ 189
                L I    D      L + ++E      K+I K   +I  + +   +     NE++
Sbjct: 138 GLDKYLCIV-RTDKVKGYQLENKVQEFFDERVKNIKKVDLRIFCSLMNDNNLNMIENEVE 196

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  Y      I  + +K +   +    I +++NA    KI +A+ + +  +        
Sbjct: 197 KLCCYTYGRD-IEREDIKKVFLKSSEEDIFDLVNAISNKKIKDALHILNELIYGGAKISY 255

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEK 277
           +L    ++F +L KI +  E  +   E 
Sbjct: 256 ILSMIERQFNILLKIKLYLEYGSTKKEA 283


>gi|194476915|ref|YP_002049094.1| hypothetical protein PCC_0445 [Paulinella chromatophora]
 gi|171191922|gb|ACB42884.1| hypothetical protein PCC_0445 [Paulinella chromatophora]
          Length = 322

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 17/243 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I++G D+  I + I    K +        +L   +  +  + I     E  +     
Sbjct: 2   PVYIYWGDDEAAIIQSIKTLIKEVIHPLWLEVNLSRFDGNQNSQTIQAL-EECITPPFGD 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             ++ +I N         ++ + LE  +        +I+ S +     ++ N  L+KIA 
Sbjct: 61  GGRVTIINNNPFCNQCSSRLSNQLETSLKLIPEQCYLILISLDKPKAFLQTNKLLKKIAI 120

Query: 133 KFTSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +   +L A+  YP+ K     L+ +++      I+ +A ++L   +G D +  +NE++KL
Sbjct: 121 EQKFMLPALWDYPNQKE----LVRQTIHKTGLRINNQALEVLSTAVGKDSMNLKNEIEKL 176

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + Y     +IT + V  +I       + EI  A I+G+I  AI L D  L        ++
Sbjct: 177 ALYSGH-KIITAEAVVALIYLQSTNNL-EIGIALIKGQIGEAISLIDILLDKNELGLRIV 234

Query: 252 HGF 254
              
Sbjct: 235 SAL 237


>gi|268609923|ref|ZP_06143650.1| DNA polymerase III subunit delta [Ruminococcus flavefaciens FD-1]
          Length = 366

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 95/285 (33%), Gaps = 31/285 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  YG +   + +L  Q  K      ++ F+L  L    +  + S  ++ +    + S
Sbjct: 20  NIYYIYGQNIPEVDKLTKQIIKAAVGD-NEEFALTRLEGRYL--DFSELYDMVQMMPMMS 76

Query: 82  KKKIILIENLSTEK-----------KVLDCLEEIIIKNICNHIIIIKSNEIK-------- 122
               ILI + + E+            +   L E I       ++I      +        
Sbjct: 77  DYNCILINDYNCERPRENMAGLRADDITKKLLEAIKDVPPQTVVIFNVTGFEIAIKYDYK 136

Query: 123 -KNNTLR----KIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            K N ++    K+A+       A+ C       +   I  ++      IS  A + L   
Sbjct: 137 AKQNVIKDKNKKLADFAAKHGTAVECPVKTAQDMAKDIASAVSARGGFISINAARELAEL 196

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
              D +  +NE+ KL SY      IT + + D++     +    + +A        A   
Sbjct: 197 CQCDTLTIKNEIDKLCSYA-GSKEITSELIGDMVHHESGVTAYNLASAVAASDRKTAFEA 255

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281
            D  +A K    A+L      F  L+   +            +++
Sbjct: 256 MDELMADKDNRGAVLAAITSAF--LDMYRVQAARRCGKHADAVKQ 298


>gi|91217486|ref|ZP_01254445.1| hypothetical protein P700755_19752 [Psychroflexus torquis ATCC
           700755]
 gi|91184371|gb|EAS70755.1| hypothetical protein P700755_19752 [Psychroflexus torquis ATCC
           700755]
          Length = 335

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 107/305 (35%), Gaps = 21/305 (6%)

Query: 22  FVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            ++   G  +   +  +  + +  +       F+  +L   E+   I     +     + 
Sbjct: 18  PIYFLVGEKETFFVDLIAEKIEATVLTEDEKAFNQSILYGKEVT--IDDVIGQAKQYPMM 75

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAEKFTSVL 138
           S  ++I++    +  K +D L   +     N I++  +K  ++     + K+ +K     
Sbjct: 76  SDYRVIIVREAQSLLKNIDTLSSYVEHPQQNTILVFCVKYKKMDGRQKVTKLLKKSAVYF 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                 DN+  +   I E+L     +I+ +A ++L+  LG +      EL+KL +   + 
Sbjct: 136 ETKPMYDNQ--VPQWISETLSTSGYTIAPKASEMLVEFLGNNLSHIHKELEKLQNILSKG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT + V++ I  +      E+  A        A  +  +F  +    P    +     
Sbjct: 194 SKITPELVEENIGISKDFNNFELTKAIGIKDEMKAQRIVAYFAQNSKNHPIILTMTQLNS 253

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  L + H +K+ S       +                  ++ ++      ++ K    
Sbjct: 254 FFNKLLRYHALKDKSQYVASAALG--VNPFF----------VKDYSFAAQNYSMKKASQA 301

Query: 317 IHLAR 321
           I L R
Sbjct: 302 IALIR 306


>gi|167564097|ref|ZP_02357013.1| DNA polymerase III subunit delta [Burkholderia oklahomensis EO147]
          Length = 325

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF  
Sbjct: 19  LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K   D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALLNAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKVDPVDRAQLPNWIGQRLALQGQRVAPGEDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + ++D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGTLTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L KI      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLKIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|50120246|ref|YP_049413.1| DNA polymerase III subunit delta [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610772|emb|CAG74217.1| DNA polymerase III, delta subunit [Pectobacterium atrosepticum
           SCRI1043]
          Length = 341

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 99/252 (39%), Gaps = 9/252 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
              ++ +G+D  L+ E ++  K+      + + FS +    L++  +    ++   + SL
Sbjct: 18  RGCYLVFGTDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTDWDAVFSTCQALSL 73

Query: 80  FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           F+ ++  ++L+        + + L ++      + ++I++ +++ K        +     
Sbjct: 74  FASRQSLLLLLPENGPNAAMSENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQD 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + ISC    +  L   + +     + ++ ++A Q++     G+ +A    L++L+    
Sbjct: 134 SVYISCLTPEQGQLPRWVAQRAKAMKLTLDEQATQLICYCYEGNLLALSQALERLAL-LY 192

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   V++ + D         ++A + GK   A  +             LL    +
Sbjct: 193 PDGKLTLPRVENAVNDAAHFTPFHWLDALLAGKGKRAWHILQQLKQEDCEPVILLRTLQR 252

Query: 257 KFQLLEKIHIIK 268
           +   L  +    
Sbjct: 253 ELLQLLALKRRM 264


>gi|229916357|ref|YP_002885003.1| DNA polymerase III, delta subunit [Exiguobacterium sp. AT1b]
 gi|229467786|gb|ACQ69558.1| DNA polymerase III, delta subunit [Exiguobacterium sp. AT1b]
          Length = 339

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 131/323 (40%), Gaps = 20/323 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++K L+     +  K  + +  D F ++ L+  E   + +   +E  +   FS+
Sbjct: 20  VYVLHGTEKYLLETWEREIVKAANPS-GDQFDVMQLDLQETSLDTA--LDEAETVPFFSE 76

Query: 83  KKIILIENL-------STEKKVLDCLEEIIIKNICNHII--IIKSNEIKKNNTLRK-IAE 132
            + ++++N          +K  +D L E +++     ++  I++S ++ +   + K + E
Sbjct: 77  YRTVIVKNAQFLTGAKEKQKHNVDRLAEYVVQPATYSVLVLIVESEKLDERKKIVKRLKE 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +   + A      ++  LM  + ++L   Q+ + +   + LL     D      EL+KL 
Sbjct: 137 RAIVLEAKKP---SQNELMRYVNDALSREQQKMERSTMERLLFLCQDDWGKLVRELEKLQ 193

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      I  + V D++  T    + ++    ++ +   A+ L             LL 
Sbjct: 194 LYAGTGATIPIEIVNDLVPRTLEDNVFQLSELLVKRQADAALRLVRDLEKQGQELIGLLG 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              ++++ +  +      +    ++I  K      P    +  ++ R +++  +   L  
Sbjct: 254 LLARQYRNM-YLSKQLTEAGYGEKQIASKIGA--HPYTIKLATQASRGFSEAQLARALTL 310

Query: 313 IDHRIHLARKKKYLEKNIIFQTI 335
           I      A K    +K I+F T+
Sbjct: 311 IADAD-EAMKTGRGDKQIVFDTL 332


>gi|257884749|ref|ZP_05664402.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,501]
 gi|257820587|gb|EEV47735.1| DNA polymerase III subunit delta [Enterococcus faecium 1,231,501]
          Length = 344

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 121/301 (40%), Gaps = 18/301 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           +++ +EN   L+ EK      +  D L   + + + + +++  +   K +   RK   K 
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDE--RKKVTKQ 134

Query: 135 --TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              + + I+    N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 135 LKKTAIIINVQQLNEKEVRQYLMNTLENSSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 I 313
           +
Sbjct: 312 L 312


>gi|148981394|ref|ZP_01816390.1| DNA polymerase III subunit delta [Vibrionales bacterium SWAT-3]
 gi|145960886|gb|EDK26216.1| DNA polymerase III subunit delta [Vibrionales bacterium SWAT-3]
          Length = 341

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 115/317 (36%), Gaps = 12/317 (3%)

Query: 9   FIQKSTKNLFLS-HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           F  +  + L      V++ +G++  L+ E     +K         F      A++   + 
Sbjct: 4   FADRLPEQLAKQLSNVYLIFGNEPLLLQESREAIQKAAKQQG---FEERHRFAIDNSMDW 60

Query: 68  STFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +  ++   + SLFS ++II +E         +   L  I      + ++I+   ++ K  
Sbjct: 61  NQVYDCTQALSLFSSRQIIELELPESGVNAAIAKELLAISEHIHSDILLILVGTKLTKAQ 120

Query: 126 TLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
              K  +  ++    +SC   +   L   ++        S   EA Q+L     G+  A 
Sbjct: 121 ENAKWFKALSNKGHWVSCLTPDVSRLPQFVQARCRQVGLSPDPEAIQMLAQWHEGNLFAL 180

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              L+KL+     D  +T   +++ +   +        +A + GK   A  +     A  
Sbjct: 181 TQSLEKLAL-QYPDGKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEG 239

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    LL    ++  LL +  + ++   +   ++ +K    I   K+ +   +L   + +
Sbjct: 240 VEPVILLRSVQRELALLLQ--MQQQMKLMPIGQVFEKHR--IWQSKKPLYNAALTRVSIS 295

Query: 305 LVRETLHKIDHRIHLAR 321
            +      +     + +
Sbjct: 296 QLHSLFALLTQAELITK 312


>gi|254479241|ref|ZP_05092585.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM
           12653]
 gi|214034810|gb|EEB75540.1| DNA polymerase III, delta subunit [Carboxydibrachium pacificum DSM
           12653]
          Length = 338

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 128/312 (41%), Gaps = 19/312 (6%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F++   K       +++FYG ++ L+ + + + K  + +   +  + +V+     ++ +
Sbjct: 5   EFVESIKKGQIA--PLYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYV 62

Query: 68  STFWNEINSTSLFSKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKS 118
                   +   FS  KI++++N   +         K++ D  + +++ N    ++++  
Sbjct: 63  EAIIENCETLPFFSNYKIVVVKNEEEQLSKIGDKELKRLTDYFKNMVLGNTSLVVVVVSG 122

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            +I     L K  EK  +V+      P+  ++        L    K  +K+  + L+ N+
Sbjct: 123 EKIDSRKKLYKFMEKEAAVVEFKKLTPEEAVNYAGY---FLKKHGKKAAKKDVEYLVKNI 179

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G D  +  NEL+K+ +Y   +  +  +  ++++  T    +  ++NA    K   A    
Sbjct: 180 GTDLYSIVNELEKVIAYSEGE-TLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              L+       +L    ++ +L+ K+  +      +F+K    +   I     + +   
Sbjct: 239 YALLSKGEVPLIILTMIARQIRLIAKLKSL---EGKAFDKKSIASYLGIPFFAVDDIVRQ 295

Query: 298 LRIWNKNLVRET 309
            +++ +  + + 
Sbjct: 296 SKLFTREDLYKA 307


>gi|168236640|ref|ZP_02661698.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736664|ref|YP_002113764.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712166|gb|ACF91387.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290304|gb|EDY29660.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 343

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ +++    +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|312867267|ref|ZP_07727477.1| DNA polymerase III, delta subunit [Streptococcus parasanguinis
           F0405]
 gi|311097396|gb|EFQ55630.1| DNA polymerase III, delta subunit [Streptococcus parasanguinis
           F0405]
          Length = 344

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 111/309 (35%), Gaps = 33/309 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G    L     K I     D     F +   +  E++ +       + S 
Sbjct: 17  PILVLTGEDVGQFEWLKKDILKKIGYDPSDLNYSYFDMKEASYAEVELD-------LVSL 69

Query: 78  SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +KI+++++L     + ++ + D      E  +     +  ++I +  ++     L
Sbjct: 70  PFFADEKIVILDHLLDLTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129

Query: 128 RKIAEKFTSV--LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            K+ ++   +   AI      +  L                 ++   LL   G D   S+
Sbjct: 130 VKLLKRDAQIIEAAIP----KEQDLKRYFASQAQELGLQFEGDSLDQLLLKSGYDFGESQ 185

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             L  L +Y  ED  IT + +++++  +    I ++    ++ +I  A  L         
Sbjct: 186 KNLALLQAYK-EDGQITLEEIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGE 244

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIW 301
               L+   L +F++  ++ I  E    S  +I+        + + P +        R  
Sbjct: 245 DEIKLIAILLSQFRMFSQVKIFSE-EGQSESQIVASLSDLSGRKVNPYQVKFALRDSRRL 303

Query: 302 NKNLVRETL 310
           + + +++ +
Sbjct: 304 SLSFLKQAM 312


>gi|300088587|ref|YP_003759109.1| DNA polymerase III subunit delta [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528320|gb|ADJ26788.1| DNA polymerase III, delta subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 336

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 100/276 (36%), Gaps = 29/276 (10%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D   +   + + K  +        +  VL+   +  N       +N+    +  
Sbjct: 3   YILAGPDDFSLKARLAEIKAGLGDPQMLETATSVLDGDRLNPNDLRLA--LNTVPFLAPA 60

Query: 84  KIILIENL---------STEKK--------------VLDCLEEIIIKNICNHIIIIKSNE 120
           +++++  L         S  K               + D    I+       ++++++  
Sbjct: 61  RLVIVSGLLARFKPSGESGSKATKSKKKPVDTESSLLKDLAAAIMGSPPSTVLVLVENGA 120

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           + K N L K  +    +        +K  L + +   +      I+  A  +L   +G D
Sbjct: 121 V-KTNPLFKEIQSGVKLEEFP--QPSKPALKEWLGRRVTECGGHITPPAINLLAQYVGAD 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
              +  E++KL+ Y      ITE  V+ +  ++    I  +++A  + +  +A+   +  
Sbjct: 178 LWTAAAEVEKLTLYAGNRP-ITEDDVRLLTGNSQEASIFNLVDAVFEQRPKDAMAALESL 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
            +  + +  +L    ++ +L+ ++  +K       +
Sbjct: 237 KSGGVSAGYILAMIARQLRLVIQVKDLKARKEKDTD 272


>gi|134300345|ref|YP_001113841.1| DNA polymerase III subunit delta [Desulfotomaculum reducens MI-1]
 gi|134053045|gb|ABO51016.1| DNA polymerase III, delta subunit [Desulfotomaculum reducens MI-1]
          Length = 346

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 124/338 (36%), Gaps = 30/338 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG ++ L  + + +FK+ +     D F+L +L+  E   +I T  +   +    +
Sbjct: 18  PVYLFYGEEEYLKEKAVEKFKEFLLPQAAD-FNLDLLDGEE--ADIDTVISFAENMPFMA 74

Query: 82  KKKIILIENLS--TEKKVLDC------------LEEIIIKNICNHIIIIKSNE-IKKNNT 126
           ++++++++N    + K   +             L + +        ++  + E + +   
Sbjct: 75  ERRLVIVKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTCLVFVAKEAVDRRKK 134

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASR 185
             K  E       I         ++  + + +    K+I   A + ++   G    +  +
Sbjct: 135 TYK--EISAKGQVIDFKMLKPSEMITWVNQIVKGTGKTIEPSAARAIVEANGKLGLLNLK 192

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ KL SY   +  IT   V ++        I  +++  + G    A+      L+ K 
Sbjct: 193 NEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKALNGIRELLSLKE 252

Query: 246 PSHALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
               +L    ++     +I +  E          ++ +K   +   +K+ +    +R   
Sbjct: 253 QPTKILALLARQL----RIALQAEALLREGSPEREVARKMGIHDFVIKKAL--TQIRRGG 306

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
              ++  L +I       +K +      I   ++   Q
Sbjct: 307 SQRMKWALQEIATIDAAIKKGQRDFLPAIETMLIQFGQ 344


>gi|254523100|ref|ZP_05135155.1| DNA polymerase III, delta subunit [Stenotrophomonas sp. SKA14]
 gi|219720691|gb|EED39216.1| DNA polymerase III, delta subunit [Stenotrophomonas sp. SKA14]
          Length = 345

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 12/283 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 19  PVYLIAGPETLRVLEAADAIRARARGAGIGEREVFDADGRDF--DWNQLDASFNAPSLFS 76

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + + +       + +++I +NE  K +   K AE    +  
Sbjct: 77  ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITANEWSKAHQ-GKWAEAVNRIGV 135

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +S  +      L D IE  L          A Q L   + G+ +A+  E+ KL+      
Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  ++ AT  G+    + +            AL+   +++ 
Sbjct: 196 P-LDVERMESLVADAARYDVFRLLEATFSGQPPAVLRMLAGLRGEGEAVAALMPMVIREL 254

Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                   +     N++ E       + I   ++   + +L+ 
Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293


>gi|260062813|ref|YP_003195893.1| hypothetical protein RB2501_14524 [Robiginitalea biformata
           HTCC2501]
 gi|88784381|gb|EAR15551.1| hypothetical protein RB2501_14524 [Robiginitalea biformata
           HTCC2501]
          Length = 334

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 104/284 (36%), Gaps = 11/284 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++   +    +N  L+  V+   G +   I  +     +N+       F+  VL  
Sbjct: 1   MEEVKA---LIGDIRNGKLA-PVYFLMGDEPYYIDRISEFIGENVLTEEERGFNQTVLYG 56

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +            + ++ +++++       + ++ L E       + I++I  K 
Sbjct: 57  KDTGVDE--IVGHAKRYPMMAEYQVVIVREAQHLSRTIEQLAEYAANPQPSTILVICYKY 114

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L K   K  SV+        +  + D I   LL     IS +A  +L+  +G
Sbjct: 115 KTLDRRKKLIKTLRKGESVV-FESKKLYENQVADWIRRVLLGSDYRISHKASALLVEYMG 173

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D     NEL KL     +   IT + V++ I  +      E+  A     I  A  +  
Sbjct: 174 TDLSRISNELDKLKLVLPKGAEITPETVEEHIGISKDFNNFELKKAIAGRDIPKATRIIA 233

Query: 239 FFLASKMPSHALLHGFLQK--FQLLEKIHIIKECSNISFEKIIQ 280
           +F  +   +  +L   L    F  L + H + + S  +    ++
Sbjct: 234 YFSQNPKENPFVLTVALLHTFFSQLLQYHGLSDHSPKNVASALR 277


>gi|325127786|gb|EGC50694.1| DNA polymerase III, delta subunit [Neisseria meningitidis N1568]
          Length = 332

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSN 272
           + L ++  + +   
Sbjct: 253 RTLIRLAAVLKQGQ 266


>gi|323499958|ref|ZP_08104916.1| DNA polymerase III subunit delta [Vibrio sinaloensis DSM 21326]
 gi|323314975|gb|EGA68028.1| DNA polymerase III subunit delta [Vibrio sinaloensis DSM 21326]
          Length = 337

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 107/304 (35%), Gaps = 11/304 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H  ++ +GS+  L+ E     ++       +      ++A     + +  ++   + SLF
Sbjct: 17  HPNYLIFGSEPLLLQESRQAIQQAALAQGFEERHRFAIDASF---DWNVVYDCCQAMSLF 73

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           S +++I +E         +   L  +      + I+++  +++ K     K  +   +  
Sbjct: 74  SARQLIELELPESGVNAAIAKELLALSGMLHSDVILVVIGSKLTKAQENAKWFKALASQG 133

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ++C   +   L   ++            EA Q+L     G+  A    L+KL+     
Sbjct: 134 CWVNCLSPDIQRLPQFVQTRCRALNLKPDPEAVQMLAQWHEGNLFALVQSLEKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +    +++ +   +       I+A + GK   +  +     A  +    L     ++
Sbjct: 193 DGELNLIRLEESLSRHNHFTAFHWIDALLAGKANRSQRIMRQLEAEGVEVVILARTVQKE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L  +  + +       ++ +     +   KR +   +L   + + V + L  +    
Sbjct: 253 LSQLLAMLQMMQTE--PMNRVFEAYR--VWQSKRPLYSAALSRLSISKVSQLLQLLAKIE 308

Query: 318 HLAR 321
            L +
Sbjct: 309 ILTK 312


>gi|291615304|ref|YP_003525461.1| DNA polymerase III, subunit delta [Sideroxydans lithotrophicus
           ES-1]
 gi|291585416|gb|ADE13074.1| DNA polymerase III, delta subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 337

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 97/284 (34%), Gaps = 14/284 (4%)

Query: 68  STFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +   N   S SLFS +K+I   I +     +    L+E       + + +I    +    
Sbjct: 61  AELCNSAQSMSLFSSRKVIDLRIPSGKPGVEGAQALQEHCEALDPDTLTLISLPRLDGTA 120

Query: 126 TLRKIAEK-FTSVLAISCYPDNK--IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
              K           I    D      L   I   +    +S   +    L   + G+ +
Sbjct: 121 MKSKWFTALEQHGTVIG--ADEVLLAALPAWIAARMKRQGQSADADTLSFLAQRVEGNLL 178

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A+  E+QKL+        ++   VKD + D     + ++  A + G     + + +   A
Sbjct: 179 AAFQEIQKLAL-LFPVGPLSFDQVKDSVMDVARYDVFKLSEAMLAGDAERYVRILEGLRA 237

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
               +  +L    +  + L K+    + +  +    ++     +  +++ +++ ++R + 
Sbjct: 238 EGTATVLILWAVAEDIRTLAKVSRAVQQNG-NLSGALRDAR--VWGIRQKLVERAVRRFT 294

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
                  L +      L +    L +  ++  +L +     +  
Sbjct: 295 PFFAERALRQAAQIDKLVK---GLRQGDVWDELLQLGVRCARAG 335


>gi|70726329|ref|YP_253243.1| DNA polymerase III subunit delta [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447053|dbj|BAE04637.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 324

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 121/304 (39%), Gaps = 18/304 (5%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           + + +   YG    L+ +  N+   +      D F+ V  N  E   ++ST   E  +  
Sbjct: 1   MGNNIMAIYGEVPELVEKKSNELTHSFLNEDKDDFNYVKYNLYET--DMSTVIEEALTMP 58

Query: 79  LFSKKKIILIENL---STEKKVLD------CLEEIIIKNICNHIIIIK--SNEIKKNNTL 127
             S+KK+I+++N    + EK   D       + E + K    +++I +  SN++ +   L
Sbjct: 59  FISEKKVIVVKNSFIFTGEKVNKDITPNNEQVIEFLEKYDGENLVIFEIYSNKLDERKKL 118

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K + +  +    + +  +   I+  +    K I ++A  + +   G +      E
Sbjct: 119 TKSLKKSSKLSKVDQMSEEE--IKSWIQNQIHENYKDIKQDALNLFIELTGVNFNIVSQE 176

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L K+S +  +   IT+  V  II  +    +  +     + +   AI L    +  K   
Sbjct: 177 LDKISLFLGDRTTITKNDVSLIINRSLEQNVFLLTEFIQKNQKDKAIQLVKDLIIMKEEP 236

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL      ++L  +  I+ +    S ++I +    N+ P +  +    +R +    + 
Sbjct: 237 IKLLALITSNYRLYYQCKILAQ-KGYSGQQIAKTI--NVHPYRVKLALNQVRHYELGQLL 293

Query: 308 ETLH 311
             ++
Sbjct: 294 NIIN 297


>gi|86610126|ref|YP_478888.1| DNA polymerase III subunit delta [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558668|gb|ABD03625.1| DNA polymerase III, delta subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 330

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 125/330 (37%), Gaps = 26/330 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++++G D   + + + Q +  +   +   F+   L             N+  +  L S
Sbjct: 2   PVYLYWGDDTYRLMQAVQQLRDQVLDPHWAAFNYDRLPPESTIAG----LNQAMTPPLGS 57

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIA- 131
             +++ +E  +      + + + +E  + +      +++ +       +K    L+K A 
Sbjct: 58  TARLVWLEETTLTHHCSEDLWEEVERTLAQLPPTTHLLLTTSSKPDGRLKSTKILKKTAI 117

Query: 132 --EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             E           P ++  ++  ++        ++S  A Q L   +G D      EL+
Sbjct: 118 VREFSQLA------PWDEEGILQQVQREAEQRDLALSPAAAQKLAEAVGNDSRRLAMELE 171

Query: 190 KLSSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           KL+ +   +   I+ + V+ ++         ++  +  +G +  A+ +    L    P+ 
Sbjct: 172 KLALFTAGQQDPISPEQVEALVP-ASAYNSFQLAGSLRKGNLEQALRILTHLLDHNEPAL 230

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L   + +F+    + ++ +      + I QK E    P +   LQ+ +       + +
Sbjct: 231 KVLAVLVGQFRTWLWVRLLLDQGERDPKVIAQKAEIG-NPNRVYFLQKEVGSLKTTALLK 289

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            + ++    +  ++    E++   + ++ I
Sbjct: 290 AMQQLLQLEYNLKQ-GQPERDAFQEALIQI 318


>gi|149280353|ref|ZP_01886474.1| hypothetical protein PBAL39_12568 [Pedobacter sp. BAL39]
 gi|149228902|gb|EDM34300.1| hypothetical protein PBAL39_12568 [Pedobacter sp. BAL39]
          Length = 341

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 113/315 (35%), Gaps = 28/315 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +   I ++I+  +++I       F+  VL   +   +++T  N      + S
Sbjct: 17  PVYLLHGEEPYYIDQIIHYMEEHILNDMEKGFNQTVLYGKDT--DMATIMNAAKRFPMMS 74

Query: 82  KKKIILIENLSTEKKVLDC---------LEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130
             ++I+++     K   +          +     K + + I+++  K     K   + K 
Sbjct: 75  DYQLIVVKEAQDLKWAKETEGSSKEAGFVLSYFEKPLPSTILVLGYKYANFDKRKKIYKA 134

Query: 131 AEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            +K      +    D      L   I++ +      I+ +A  ++   LG D     NEL
Sbjct: 135 IDKS----GVVFQSDLVRDYKLAGWIDDLVKEKGYKIAPQASALMAEYLGTDLSKISNEL 190

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMP 246
           +KL     ++ +I    V+  I  +    + E+  A     +     + ++F  +    P
Sbjct: 191 EKLMLNISKETIIDTDLVQKNIGISKEYNVFELQKALASRNVLKCNQIINYFADNPKANP 250

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              ++      F  + K H ++   + + E  +               + + R +N N  
Sbjct: 251 MVMVMANLNAYFTKILKYHYLQNKGDAAKELGVN----PYFVKD---YEAAARSYNLNKT 303

Query: 307 RETLHKIDHRIHLAR 321
            + +  +      ++
Sbjct: 304 FDIISLLREYDLKSK 318


>gi|91792157|ref|YP_561808.1| DNA polymerase III, delta subunit [Shewanella denitrificans OS217]
 gi|91714159|gb|ABE54085.1| DNA polymerase III, delta subunit [Shewanella denitrificans OS217]
          Length = 343

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 98/290 (33%), Gaps = 10/290 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ +G D  L+     Q  K         F   V  A E   N      E  S SLF+ +
Sbjct: 19  FLLFGDDPWLVDNAKRQILKAAKKQG---FEERVQLAQENNFNWDELQQEWQSMSLFASR 75

Query: 84  KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II   + N          L+ ++     + ++I+   ++    T  K  +      + +
Sbjct: 76  RIIELQLPNAKPGTDGSAALQSLMQFPNPDVLLILHGPKLASEQTNNKWFKSLDAHGVYV 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++E + + +  +  +AK +L     G+ +A+   LQ L      + L
Sbjct: 136 PCITPEGKQFSRWLDERINLYKLQLDHDAKAMLFNLFEGNLLAAEQALQLLQLLS-PNTL 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I    + D   D     + ++++A +      A  +     +       LL    ++   
Sbjct: 195 IHSDKLSDYFEDQSHFSVFQLMDALLSNHQKQAQHMLAQLASEDTALPILLWALFKELST 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L  +    +        +  K    I   ++ + Q +L   +   +   L
Sbjct: 255 LLALK-QAQAQGEQLNALWSKHR--IWDKRKPLYQHALSHLSLAQIEHML 301


>gi|146300667|ref|YP_001195258.1| DNA polymerase III, delta subunit [Flavobacterium johnsoniae UW101]
 gi|146155085|gb|ABQ05939.1| DNA polymerase III, delta subunit [Flavobacterium johnsoniae UW101]
          Length = 334

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 125/324 (38%), Gaps = 16/324 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I +L    ++N+       F+  VL   ++   +    +      + +
Sbjct: 18  PIYFLMGEEPYYIDKLSEYIEQNVLAEEEKGFNQTVLYGRDVS--VEDIVSTAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +++++++      + +D +E  +   + + +++   K   + K   + K+     + + 
Sbjct: 76  DRQVVIVKEAQELSRTIDKIEAYVNNPMESTVLVFCYKYKTLDKRKKVTKLL--AQNGIV 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  + D I+  L   + +I  +A  +L+  LG D     NEL+KL     +  
Sbjct: 134 YESKKLYENQVGDWIKRVLAGKKYTIDPKANAMLVEFLGTDLSKINNELEKLQIILPQGT 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
           +IT QH+++ I  +    + E+  A  +     A  +A+ F  +  + P           
Sbjct: 194 MITPQHIEENIGFSKDYNVFELRKAIGERNQLKAYKIAENFAHNPKEYPLVMTTGLVFGF 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F  L K H +K+ +  +   ++          + ++   +++ +    V + +  +    
Sbjct: 254 FVQLLKYHGLKDKNPKNVASVLG--VNPFFLKEYDL---AVKNYPMRKVSQIVGALRDID 308

Query: 318 HLAR---KKKYLEKNIIFQTILYI 338
             ++        + +++ + +  I
Sbjct: 309 VKSKGVGANALPQSDLLKEMLYKI 332


>gi|308388896|gb|ADO31216.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis
           alpha710]
 gi|325129868|gb|EGC52673.1| DNA polymerase III, delta subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136070|gb|EGC58680.1| DNA polymerase III, delta subunit [Neisseria meningitidis M0579]
 gi|325140137|gb|EGC62666.1| DNA polymerase III, delta subunit [Neisseria meningitidis CU385]
          Length = 332

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSN 272
           + L ++  + +   
Sbjct: 253 RTLIRLAAVLKQGQ 266


>gi|225025260|ref|ZP_03714452.1| hypothetical protein EIKCOROL_02157 [Eikenella corrodens ATCC
           23834]
 gi|224942018|gb|EEG23227.1| hypothetical protein EIKCOROL_02157 [Eikenella corrodens ATCC
           23834]
          Length = 335

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 116/345 (33%), Gaps = 17/345 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I + + +    +       +++ +G +  L  E ++  +       +        + 
Sbjct: 1   MAAISTERLL---PQLKQPLQALYVLHGEEALLRIEALDAIRAAAKEQGYLNRET---HT 54

Query: 61  LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
            +   +        NS  LF++ K+  I +      K   + LE++      + + +I  
Sbjct: 55  PDTAADWQDLLASANSIGLFAELKLLEIHLPGGKPGKAGGEALEQLAANLPPDTVTVILL 114

Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            ++++  T  K       S   +     +   L   I   L     SI  EA  +    +
Sbjct: 115 PKLERAQTQAKWFAALSRSGTVVEAKAVDAQALPGWIRGRLAQHHLSIGNEALALFAERV 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A++ E+ KL+        +     +  + D     + ++  A + G+    + L 
Sbjct: 175 EGNLLAAKQEIDKLALLYPAGHELGIAETEAAVADVARFDVFQLAAAWMSGEPARVVRLL 234

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           +   A       LL       + L ++         +  ++       +   K+ +   +
Sbjct: 235 EGLEADGEEPVMLLWMLADDIRTLIRLTAAL-KQGQTVAQVRNSLR--LWGSKQQLAPLA 291

Query: 298 LRIWNKNLVRETLH---KIDHRIHLARKKKYLEKNIIFQTILYIA 339
           +R      +   L    +ID  I  A  +       I Q ++ +A
Sbjct: 292 VRRIATPRLIAALQECARIDRIIKGA--ETGEAWPAIRQLLVSLA 334


>gi|293569410|ref|ZP_06680707.1| DNA polymerase III, delta subunit [Enterococcus faecium E1071]
 gi|291587936|gb|EFF19787.1| DNA polymerase III, delta subunit [Enterococcus faecium E1071]
          Length = 344

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 122/301 (40%), Gaps = 18/301 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++K L  ++  +  K I +   D  +   L+      ++     E  +   F  +
Sbjct: 19  YLILGTEKFLQDQVRTEIVKKIQLEGEDDLNF--LSFDMENASLDEVVAEAETLPFFGDQ 76

Query: 84  KIILIEN---LSTEK------KVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAE 132
           +++ +EN   L+ EK      +  D L   + + + + +++  +   ++ +   + K  +
Sbjct: 77  RLVFVENPYFLTGEKVNNGIEQNTDLLTAYLKEPLESTVLVFFAPYEKLDERKKVTKQLK 136

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K   ++ +     N+  +   +  +L      + + A  + L     D      ELQKL 
Sbjct: 137 KTAIIVNVQ--QLNEKEVRQYLMNTLENTSIKMERSAIDLFLRLTDLDLSKMMRELQKLV 194

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            Y      IT + V++++  T    I ++    ++GK   A+ L +  +     +  +  
Sbjct: 195 LYGQNQQQITVREVEELVPKTLEHNIFDMTQYILKGKTEQALRLYEDLVMQGEETIKINA 254

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L + +L  +   + +         I +T K I P +  +  + ++ ++++L+ +   +
Sbjct: 255 ILLSQLRLFLQTKFLVKIGYQQAN--IAETLK-IHPYRVKLAMQEVKKFDEHLLVQLFDQ 311

Query: 313 I 313
           +
Sbjct: 312 L 312


>gi|255066653|ref|ZP_05318508.1| DNA polymerase III, delta subunit [Neisseria sicca ATCC 29256]
 gi|255048981|gb|EET44445.1| DNA polymerase III, delta subunit [Neisseria sicca ATCC 29256]
          Length = 333

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 15/284 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +   +      +         S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVFTADNG---ADWDELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   D L+    +   + + +I   +++K  T  K          
Sbjct: 74  DLKLLEIHIPNGKPGKTGGDALQTFAERLPEDTVTLILLPKLEKAQTQAKWFTALAAKGT 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     +   L   I+  L     +I  +A  +    + G+ +A+R E+ KL+    ++
Sbjct: 134 VLEAKAISAQALPQWIKGRLNKVGLNIEPDALALFAERVEGNLLATRQEIDKLALLHPQN 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G       L D           LL    +  
Sbjct: 194 HTVNIADAEAAVANVARFDVFQLSGAWMKGDALRVARLLDGLEEEGEEPVLLLWAVAEDI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE--------KNIIPMKRNIL 294
           + L ++         S + +               I   +   +
Sbjct: 254 RTLIRLTAAL-KQGQSVQSVRDSLRLWGDKQTLAPIAVKRIPAV 296


>gi|170728033|ref|YP_001762059.1| DNA polymerase III subunit delta [Shewanella woodyi ATCC 51908]
 gi|169813380|gb|ACA87964.1| DNA polymerase III, delta subunit [Shewanella woodyi ATCC 51908]
          Length = 346

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 114/304 (37%), Gaps = 10/304 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G D  L  E   +     +    + F   +    E   N +   ++  + SLF+ +
Sbjct: 19  YLVFGDDPWL-CETSRELI--FTQAKKEGFEEKIQLTQEAGFNWNDLVDQWQAMSLFASR 75

Query: 84  KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II  ++       +     + ++     + ++II   ++    T  K  +      + +
Sbjct: 76  RIIELILPQAKPGSEGGAIFQTLMQMPNPDVLLIISGPKLAAEQTKSKWFKTLDAKGVYV 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++E +   + +++++AK++L     G+ +A+ ++  +L      +  
Sbjct: 136 PCATPEGNQFQRWLDERINHFKLTLTRDAKEMLFGLYEGNLLAA-DQSLQLLQLLSPNER 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I    +     D     + ++ +A +  +   A+ +     A  +    +L G  ++   
Sbjct: 195 IDSNQLSAYFEDQSRFSVFQLTDAMLNNQQDKALHILSQLKAEGVAMPIILWGVFKELAT 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L ++    + +N S + +  K    I   ++++ Q +L   +   +   L          
Sbjct: 255 LLQLRTALD-NNESLQSLWGKLR--IWDKRKSLYQAALNRLSLAHIETLLAGASAIELKL 311

Query: 321 RKKK 324
           +++ 
Sbjct: 312 KQQG 315


>gi|237730625|ref|ZP_04561106.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2]
 gi|226906164|gb|EEH92082.1| DNA polymerase III subunit delta [Citrobacter sp. 30_2]
          Length = 343

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +    ++   + SLF+ ++  ++ +        + + L  ++     + ++I++ N++ K
Sbjct: 60  DWGEIFSLCQAMSLFANRQTLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                        + + +SC    +  L   +     +    +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTGLANNAVQVSCQTPEQAQLPRWVAARAKLNNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++L+     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLAL-LWPDGKLTLPRVEKAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L   N
Sbjct: 239 EGSEPVILLRTIQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMMGDALNRLN 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVTLLTRTEITLKQ 314


>gi|163755502|ref|ZP_02162621.1| hypothetical protein KAOT1_05057 [Kordia algicida OT-1]
 gi|161324415|gb|EDP95745.1| hypothetical protein KAOT1_05057 [Kordia algicida OT-1]
          Length = 334

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 102/263 (38%), Gaps = 8/263 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++    ++ +       F+ +VL   ++  +            + +
Sbjct: 18  PIYFLMGEEAYYIDKIAEYIEEKVLAEEEKGFNQMVLYGRDVTVD--DIVANAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           ++++++++      + +D L   I       +++I  K  +I KN  L K+     + + 
Sbjct: 76  ERQVVIVKEAQDLSRTIDKLVSYIENPQPTTVLVICYKYKKIAKNKKLYKV--TKKNGVM 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  + D I   L   +  I+ +A Q+L+  LG +     NEL+KL        
Sbjct: 134 YESKKLYENQVADWIRRVLAGKKYKITPKAAQMLVEFLGTNLSKIDNELEKLKLILPIGS 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT + +++ I  +      E+  A     +  A  +  +F  +    P+   +      
Sbjct: 194 EITPEAIEENIGISKDYNNFELRKAIGDRDVKKAFRIITYFSENPKDNPTVVTVSLLFNF 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280
           F  L + H +++ +  +   +++
Sbjct: 254 FSQLLQYHGLRDQNPKNVASVLR 276


>gi|283834053|ref|ZP_06353794.1| DNA polymerase III, delta subunit [Citrobacter youngae ATCC 29220]
 gi|291070196|gb|EFE08305.1| DNA polymerase III, delta subunit [Citrobacter youngae ATCC 29220]
          Length = 343

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +    ++   + SLF+ ++  ++ +        + + L  ++     + ++I++ N++ +
Sbjct: 60  DWGEIFSLCQAMSLFASRQTLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTR 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                        + + +SC    +  L   +     +    +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTGLAKNAVQVSCQTPEQAQLPRWVAARAKLNNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++L+     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLAL-LWPDGKLTLPRVEKAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L    
Sbjct: 239 EGSEPVILLRTIQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGDALNRLT 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVTLLTRTEITLKQ 314


>gi|224582482|ref|YP_002636280.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467009|gb|ACN44839.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|321226227|gb|EFX51278.1| DNA polymerase III delta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 340

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 57  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 116

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 117 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 176

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 177 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 235

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 236 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 291

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 292 PAQLRQAVQLLTRTEITLKQ 311


>gi|161504179|ref|YP_001571291.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865526|gb|ABX22149.1| hypothetical protein SARI_02286 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 343

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 95/268 (35%), Gaps = 24/268 (8%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++   + +        + + L  +I     + ++I+      +
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLALQLPENGPNAAMNEQLATLIGLLHDDLLLIV------R 113

Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N L K  E      A++       C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLTKAQENAAWYAALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQTVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-EKNIIPM-KRNIL 294
                        LL    ++  LL  +         S    ++   +K+ I   +R ++
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNL------KRQSAHTPLRALFDKHRIWQNRRPMI 286

Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARK 322
            ++L+  +   +R+ +  +       ++
Sbjct: 287 GDALQRLHPAQLRQAVQLLTRTEITLKQ 314


>gi|194290698|ref|YP_002006605.1| DNA polymerase III subunit delta [Cupriavidus taiwanensis LMG
           19424]
 gi|193224533|emb|CAQ70544.1| DNA polymerase III, delta subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 352

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 109/291 (37%), Gaps = 15/291 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E +++ +          FS   +   E   +         S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDRLRATAREAG---FSEREVLVAERGFHWGRLVEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +KI+   I +    K   + L  +  +   + ++++    +    +     +      +
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVMLVTLPRLDFAASKSAWFQALEGAGV 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSS 193
           +I     ++  L   + E L + Q+ +      + A Q +   + G+ +A+  E+QKL  
Sbjct: 139 SIKVDTVDRTRLPAWVGERLALQQQRVQGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  ++ + V D + +     + ++  + + G +   + + +        +  +L  
Sbjct: 199 -LYPPGELSFEQVHDAVLNVARYDVFKLSESMLSGDVPRLVRMLEGLRGEGEATVLVLWA 257

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             ++ ++L K+      +      ++++    +   +  ++ ++ +   + 
Sbjct: 258 LTEEIRVLSKVR-QGLAAGKPAGVLMRELR--VWGPRERLVPQAAQRLAQP 305


>gi|56414219|ref|YP_151294.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363142|ref|YP_002142779.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128476|gb|AAV77982.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094619|emb|CAR60141.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 343

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVATRAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|332830307|gb|EGK02935.1| DNA polymerase III, delta subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 334

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 110/317 (34%), Gaps = 23/317 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           +A I++ KF             V++  G +   I E+ +     +       F+  +   
Sbjct: 7   IADIKARKF-----------KPVYLLMGDEPYYIDEITDMLVSTVLPEEEKDFNQTIRYG 55

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--S 118
           +E   ++++      S  + S  ++I+I+      K+ + LE      +   ++++   +
Sbjct: 56  MET--DVASVITMARSFPMMSDYQLIVIKEAQNLSKI-EELEVYAKNPLHTTVLVLNYKN 112

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + K   L   AE   + +        +  +   I   +     +I  ++ Q+L   LG
Sbjct: 113 GTLDKRKKL--YAEIDKNGIVFESKKIPEYKIPAFISSYMQQKGLAIDAKSAQMLSDYLG 170

Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     NE+ K L +       +T   +++ I  +      E++ A I+   +    +A
Sbjct: 171 NDLSKLTNEIAKLLIAMPKGQTQVTPNLIEENIGISKDFNNFELLKAVIEKNTFKVNQIA 230

Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
           D+F  + K     +    L  F     I    +                     ++ +  
Sbjct: 231 DYFEKNPKNNPLIVTLVVLFNFFSNLMICYWAKNKTEQGIAAELGFRNP--YQAKDYVA- 287

Query: 297 SLRIWNKNLVRETLHKI 313
           ++R +N     E L  +
Sbjct: 288 AIRNYNAFKCMEILSLL 304


>gi|83719754|ref|YP_441760.1| DNA polymerase III subunit delta [Burkholderia thailandensis E264]
 gi|167618685|ref|ZP_02387316.1| DNA polymerase III subunit delta [Burkholderia thailandensis Bt4]
 gi|257137926|ref|ZP_05586188.1| DNA polymerase III subunit delta [Burkholderia thailandensis E264]
 gi|83653579|gb|ABC37642.1| DNA polymerase III, delta subunit [Burkholderia thailandensis E264]
          Length = 362

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 131/349 (37%), Gaps = 27/349 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K   D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGADNPDALMLVTLPRLDSATQKSAWFTALVNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKVDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGTLTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L    
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGARERLVGPALARVSEAALEHALAFAA 311

Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351
           ++D ++          AR +   +  + +FQ  + +A+ +    +  +R
Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARASGPAGDAPRR 360


>gi|330983121|gb|EGH81224.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 213

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 79/198 (39%), Gaps = 9/198 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQASASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++ +   +     K    L E   +   + +++I   ++  +    K  +       
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSAQKTKWGKALVEGAQ 134

Query: 140 ---ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +  +P +   L   I + L     + +++A +++ A + G+ +A+  E++KL     
Sbjct: 135 TQFVQIWPVDIGQLPQWIRQRLSQAGLAATQDAVELIAARVEGNLLAAAQEIEKLKLMA- 193

Query: 197 EDILITEQHVKDIICDTH 214
           E+  IT + V+  + D+ 
Sbjct: 194 EEGQITVETVQAAVADSA 211


>gi|258592112|emb|CBE68417.1| putative DNA polymerase III, delta subunit [NC10 bacterium 'Dutch
           sediment']
          Length = 335

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 90/251 (35%), Gaps = 5/251 (1%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+  YG ++    + +NQ    +        +L  +   E     S     + +    +
Sbjct: 22  PVYCLYGEEEYRREQTLNQLLDALLTKDARDLNLDQIRPGETGA-PSIL-GSVRTLPFLA 79

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            ++++LI  +    ++  + L   +        +++ +  +     L          + +
Sbjct: 80  LRRVVLIRGVEELSREQQEELLAYLNDPCPTSCLVLTARRLDLRTRLAAAL--QKKGVLL 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                    L D +  +       +  +A  +LLA +G D       ++K++ +  E   
Sbjct: 138 RFDRLEADSLKDSLLAAADDRGVRLHPDAIGLLLALVGDDFRQLIYNIEKVALFVGEREE 197

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I    ++ ++ +T V  I ++ +A     +  A+      L S     A++    ++ +L
Sbjct: 198 IRANDIEAMVGETRVRSIFQLTDAVSSRNLDMALRCLTGLLESGEEPLAIIGMLARQIRL 257

Query: 261 LEKIHIIKECS 271
           L +   ++E  
Sbjct: 258 LVRAKALQEQK 268


>gi|83648019|ref|YP_436454.1| DNA polymerase III subunit delta [Hahella chejuensis KCTC 2396]
 gi|83636062|gb|ABC32029.1| DNA polymerase III, delta subunit [Hahella chejuensis KCTC 2396]
          Length = 338

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 114/299 (38%), Gaps = 15/299 (5%)

Query: 23  VFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           VF+  G +  L  E    I  F +    +    F            + S       S SL
Sbjct: 19  VFVVSGDEPLLRQEACDEIRAFSRKQGFSERIVFHAPK------NFDWSALDEHTQSFSL 72

Query: 80  FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           F +KK++ +  +          L         + +++I S+ I+ +    K  +   T  
Sbjct: 73  FGEKKLLEVHLDSLPNDGGKKRLAAFSENPPEDCLMLIISDRIESSTLNTKWFKSIETHS 132

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           L +  +P +   L + I + L     + +  A + L  ++ G+ +A+R E++KL     +
Sbjct: 133 LHVQVWPVSHDQLPNWINQRLHKLGFTPTSGAVKALCDHVEGNLLAARQEMEKLRLLS-D 191

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  + E+ V   I +++   +  +++A ++     A+ +     A       +L    ++
Sbjct: 192 DANLDEEQVLRGISNSNKFTVFNLVDACLERNPKQALKVLQTLQAESFEPSIVLWSLARE 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            +LL K++   + S    E+ +QK    +   +  + +  +  +N   +R         
Sbjct: 252 VRLLAKLYKHSQTS-QGLEQALQKER--VFKNRWTLYKRFIPRFNAARLRNIHQACQAA 307


>gi|15606373|ref|NP_213752.1| hypothetical protein aq_1104 [Aquifex aeolicus VF5]
 gi|7388450|sp|O67189|Y1104_AQUAE RecName: Full=Uncharacterized protein aq_1104
 gi|2983581|gb|AAC07153.1| putative protein [Aquifex aeolicus VF5]
          Length = 350

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 124/330 (37%), Gaps = 36/330 (10%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68
           F  K  K       VF+ +G ++ LI   +++ K+     Y       VL   EI +   
Sbjct: 12  FFTKPPKE-----RVFVLHGEEQYLIRTFLSKLKEKYGENY------TVLWGDEISE--E 58

Query: 69  TFWNEINSTSLFSK--KKIILIENLSTEKKVLDCLEEI------IIKNICNHIIIIKSNE 120
            F+  ++ TS+F    +K ++I N     K L   ++       +++N+ ++ + I    
Sbjct: 59  EFYTALSETSIFGGSKEKAVVIYNFGDFLKKLGRKKKEKERLIKVLRNVKSNYVFIV--- 115

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQIL 173
              +  L+K       + +++ +         +K  +  L+ +       ++  +A + L
Sbjct: 116 --YDAKLQKQELSSEPLKSVASFGGIVVANRLSKERIKQLVLKKFKEKGINVENDALEYL 173

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV-LYIEEIINATIQGKIYN 232
           L   G + +  + E++KL  Y  E  ++T   VK +       + + E ++  +      
Sbjct: 174 LQLTGYNLMELKLEVEKLIDYASEKKILTLDEVKRVAFSVSENVNVFEFVDLLLLKDYEK 233

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+ + D  ++  +    ++         L  +  + E       K ++        + + 
Sbjct: 234 ALKVLDSLISFGIHPLQIMKILSSYALKLYTLKRL-EEKGEDLNKAMESVGIKNNFL-KM 291

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322
             +  L+  +K  ++  +  +      ++ 
Sbjct: 292 KFKSYLKANSKEDLKNLILSLQRIDAFSKL 321


>gi|28199119|ref|NP_779433.1| DNA polymerase III subunit delta [Xylella fastidiosa Temecula1]
 gi|182681846|ref|YP_001830006.1| DNA polymerase III subunit delta [Xylella fastidiosa M23]
 gi|28057217|gb|AAO29082.1| DNA polymerase III delta subunit [Xylella fastidiosa Temecula1]
 gi|182631956|gb|ACB92732.1| DNA polymerase III, delta subunit [Xylella fastidiosa M23]
 gi|307578095|gb|ADN62064.1| DNA polymerase III subunit delta [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 343

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   +               ++  G +   + E  +  +            +  + + +
Sbjct: 2   ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +     +  N+ SLFS +++I I        K+  + +         + I++I  NE
Sbjct: 60  F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117

Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
             K +   K  +    +  I+  +      L D I   L       + +    L   L G
Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHRLSTRLEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E+ KL+    +  L+  + ++  + DT    +  +  A + G+    I +   
Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A      ALL   +++      +  +K  +     ++  +    I   ++   + +L+
Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292

Query: 300 IWNKN 304
                
Sbjct: 293 RHTSP 297


>gi|167550816|ref|ZP_02344572.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324119|gb|EDZ11958.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 343

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQEQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|218708737|ref|YP_002416358.1| DNA polymerase III subunit delta [Vibrio splendidus LGP32]
 gi|218321756|emb|CAV17711.1| DNA polymerase III, delta subunit [Vibrio splendidus LGP32]
          Length = 341

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  L+ E     +K         F      A++   + +  ++   + SLFS
Sbjct: 18  NVYLIFGNEPLLLQESREAIQKTAKEQG---FEERHRFAIDSSLDWNQVYDCTQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138
            +++I +E         +   L  I      + ++I+   ++ K     K  +  ++   
Sbjct: 75  SRQLIELELPESGVNAAIAKELLAISEHIHSDILLILVGTKLTKAQESAKWFKALSNQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC   +   L   ++        S   EA Q+L     G+  A    L+KL+     D
Sbjct: 135 WISCLTPDVSRLPQFVQTRCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +        +A + GK   A  +     A  +    LL    ++ 
Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
            LL +  + ++   +   ++ +K    I   K+ +   +L   + + +      +     
Sbjct: 254 ALLLQ--MQQQMKQMPIAQVFEKHR--IWQSKKPLYNSALTRVSISQLHSLFALLTQVEL 309

Query: 319 LAR 321
           + +
Sbjct: 310 MIK 312


>gi|16331691|ref|NP_442419.1| DNA polymerase III subunit delta [Synechocystis sp. PCC 6803]
 gi|1001248|dbj|BAA10489.1| sll0544 [Synechocystis sp. PCC 6803]
          Length = 333

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 110/286 (38%), Gaps = 11/286 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ ++G D+  + + + Q +K       + F+   +   E          +  +    S
Sbjct: 2   PVYFYWGEDQFTLHQAVKQLQKRCLDPQWEAFNFEKI-PGEQADATQRGLEQALTPPFGS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTS 136
             +++ + +     S +  +L  L++ +     +  ++  S++ + +     K  E   +
Sbjct: 61  GDRLVWVVDSTLGQSCDDGLLARLQKSLPAIPTDCHLLFTSSKKLDRRLKSTKYLEGNAT 120

Query: 137 VLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +   P N   L+  I+      Q  ++ E +  L   LG D     NEL KL  Y 
Sbjct: 121 IREFALISPWNVDALIHQIQAIAQDLQLPLATETEGFLAEALGNDTRLIWNELGKLKLYS 180

Query: 196 -LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML-ADFFLASKMPSHALLHG 253
             +   +T   V+ ++  +    ++ +  A   G+   A+ L AD  L    P+  +L  
Sbjct: 181 ESQTGPLTVAQVEQLVNTSTQNSLQ-LAQAIRDGETPQALQLVADLLLTHNEPALKILAT 239

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
              +F+    I +  E      + I  + + +  P +   L++ LR
Sbjct: 240 LTGQFRTWTLIKLALEAGEKDDKAIAAQADLS-NPKRLYFLKKELR 284


>gi|217420530|ref|ZP_03452035.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 576]
 gi|217395942|gb|EEC35959.1| DNA polymerase III, delta subunit [Burkholderia pseudomallei 576]
          Length = 362

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 129/349 (36%), Gaps = 27/349 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L    
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSCVSEAALEHALAFAA 311

Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351
           ++D ++          AR +   +  + +FQ  + +A+ A    +  +R
Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARAAGPGGDAPRR 360


>gi|167769103|ref|ZP_02441156.1| hypothetical protein ANACOL_00426 [Anaerotruncus colihominis DSM
           17241]
 gi|167668743|gb|EDS12873.1| hypothetical protein ANACOL_00426 [Anaerotruncus colihominis DSM
           17241]
          Length = 342

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 17/334 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V++ YG    LI        K       + F+L   +   +  ++ TF++ + S  L 
Sbjct: 15  HNVYLLYGGQAYLIALYEKMIVKKALGGADEAFNLRRFDGDTL--DLQTFYDAVESVPLM 72

Query: 81  SKKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIIIKSNEIKKN----NTLRKIAEK 133
           +    + + +L  EK     +  L  +I       +I++   E        N L K  +K
Sbjct: 73  AAGCCVTL-SLDPEKLDMSRMKELCAVIGDPPQTTVIVVTVKEPPARREKMNLLIKACDK 131

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
              V+ +          +  + +       ++       ++     D      EL KL +
Sbjct: 132 AGCVVELGS--RRGADTLRFLRDRAQKNGCTLESGEASYMVERCTDDLQLLATELDKLCA 189

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y      IT   +  ++       I ++  A ++G    A+ L       + P+   L  
Sbjct: 190 YASGRK-ITRADIDAVVTVVLQARIFDLSKAILRGNFPKAMELISQLDDLREPAARTLSI 248

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTE--KNIIPMKRNILQESLRIWNKNLVRETLH 311
               F  L +    ++  N+   +   +    KN     +N + +S   +    +   L 
Sbjct: 249 LSGAFVDLYRGFAARQA-NVPAGRAAPELGYAKNREFAIKNGMSDS-GAYTAGQLGAMLE 306

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
            +       +     ++ ++ +T+  +     + 
Sbjct: 307 ALAEADLRVKSSGGDDRVVLEETVAKLFLIGGRQ 340


>gi|168264421|ref|ZP_02686394.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347132|gb|EDZ33763.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 343

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|303257885|ref|ZP_07343894.1| DNA polymerase III, delta subunit [Burkholderiales bacterium
           1_1_47]
 gi|331000455|ref|ZP_08324130.1| DNA polymerase III, delta subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|302859228|gb|EFL82310.1| DNA polymerase III, delta subunit [Burkholderiales bacterium
           1_1_47]
 gi|329571787|gb|EGG53467.1| DNA polymerase III, delta subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 336

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 110/322 (34%), Gaps = 36/322 (11%)

Query: 12  KSTKNLFLSHFVFIFYGSDKGLIFE-----LINQFKKNISITYHDPFSLVVLNALEIQKN 66
           +  +N  L    F+  GS+  L  E         FK   S      F        E   +
Sbjct: 12  RPDENGNLPRLWFLL-GSEPLLAIEAQDAIRAAAFKAGYSERKSFVF--------EGNAD 62

Query: 67  ISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
            S  +  +   SLF +K +I +     +  K     +E +I     + ++++   +    
Sbjct: 63  YSPLYEALGDQSLFGEKNLIEVVFPRATIGKNGPAAVEAVIEHADEDKMVVVSLFDYDWT 122

Query: 125 NTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLI-GQKSISKEAKQILLANLGGDRI 182
            T +        S + I   P ++  +   I E       ++++ EA  ++     G+ +
Sbjct: 123 ATKKDWFNHLMKSSVCIRTDPIDRNAVPRWITERAKEKNGQTLTPEAANLIAERTEGNLL 182

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A+  E+QKL+   +    I    V D + D      E +  A ++G       + D    
Sbjct: 183 ATSQEIQKLAL-LVNKPEIDVSDVLDAVSDVSRFDQESLFLAMLEGDARQVSKIIDSLQG 241

Query: 243 SKMPSHA---LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             +   +   +L   ++   LL +   ++                      R+ L  + R
Sbjct: 242 ENVQIPSFLWMLTDVVRNLLLLNRGFAVRTFGLSEA--------------HRSALNRASR 287

Query: 300 IWNKNLVRETLHKIDHRIHLAR 321
             N  L+   LH++     +++
Sbjct: 288 RANPKLLELMLHRLSDVDRMSK 309


>gi|16759605|ref|NP_455222.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764023|ref|NP_459638.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142622|ref|NP_805964.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161615136|ref|YP_001589101.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990655|ref|ZP_02571755.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231661|ref|ZP_02656719.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168240495|ref|ZP_02665427.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168465823|ref|ZP_02699705.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820231|ref|ZP_02832231.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445031|ref|YP_002039889.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450654|ref|YP_002044680.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472100|ref|ZP_03078084.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197249169|ref|YP_002145622.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262448|ref|ZP_03162522.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244429|ref|YP_002214635.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390932|ref|ZP_03217543.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213161485|ref|ZP_03347195.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425090|ref|ZP_03357840.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213612902|ref|ZP_03370728.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646899|ref|ZP_03376952.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213851857|ref|ZP_03381389.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238911597|ref|ZP_04655434.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823655|ref|ZP_06543267.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25366826|pir||AI0581 DNA polymerase III, delta chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16419158|gb|AAL19597.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501897|emb|CAD05123.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138253|gb|AAO69824.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161364500|gb|ABX68268.1| hypothetical protein SPAB_02904 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403694|gb|ACF63916.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408958|gb|ACF69177.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458464|gb|EDX47303.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631973|gb|EDX50493.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212872|gb|ACH50269.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240703|gb|EDY23323.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938945|gb|ACH76278.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603377|gb|EDZ01923.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205330935|gb|EDZ17699.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334137|gb|EDZ20901.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340009|gb|EDZ26773.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343203|gb|EDZ29967.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261245919|emb|CBG23720.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992381|gb|ACY87266.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157247|emb|CBW16734.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911678|dbj|BAJ35652.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323128963|gb|ADX16393.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326622390|gb|EGE28735.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332987591|gb|AEF06574.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 343

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|167580575|ref|ZP_02373449.1| DNA polymerase III subunit delta [Burkholderia thailandensis TXDOH]
          Length = 362

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 131/349 (37%), Gaps = 27/349 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K   D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGADNPDALMLVTLPRLDSATQKSAWFTALVNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGTLTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---H 311
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L    
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGARERLVGPALARVSEAALEHALAFAA 311

Query: 312 KIDHRIH--------LARKKKYLEK-NIIFQTILYIAQTACKNNNFYKR 351
           ++D ++          AR +   +  + +FQ  + +A+ +    +  +R
Sbjct: 312 RLDRQVKGLSAVSRGAARGEPPPDPWDGLFQLAMTVARASGPAGDAPRR 360


>gi|150025132|ref|YP_001295958.1| DNA polymerase III, delta subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771673|emb|CAL43147.1| Probable DNA polymerase III, delta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 334

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 119/324 (36%), Gaps = 16/324 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I +L    +KNI   +   F+  VL   ++   I    +      + +
Sbjct: 18  PIYFLMGEEPYYIDKLSEYIEKNILQEHERDFNQTVLYGRDVT--IEDVVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +++++++      + +D LE          +++I  K   + K   + KI       + 
Sbjct: 76  DRQVVIVKEAQDLIRTIDKLESYAENPQPTTVLVICYKYKTLDKRKKITKIL--AQKGVV 133

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  + + ++  L   + +I  +A  +L+  LG D     NEL KL+    +  
Sbjct: 134 YESKKLYENQVGEWLKRVLSGKKLNIEPKASAMLVDFLGTDLSKIANELDKLAIILPQGS 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT   +++ I  +    I E   A  +     +  +AD F  +    P           
Sbjct: 194 TITPAIIEENIGFSKDFNIFEFRKAIGERNQLKSYKIADHFAQNPKDNPMVVTTSLVFSF 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F  L K H +K+ +  +   I+  +         +I   +LR +    V + +  +    
Sbjct: 254 FIQLLKYHGLKDKNPKTVAPILGVS--PFFLKDYDI---ALRNYPMKKVSQIVASLRDID 308

Query: 318 HLAR---KKKYLEKNIIFQTILYI 338
             ++        + +++ + ++ I
Sbjct: 309 VKSKGVGANALPQSDLLKEMLVKI 332


>gi|62179246|ref|YP_215663.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126879|gb|AAX64582.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713711|gb|EFZ05282.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 343

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQSLERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+  +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|281420769|ref|ZP_06251768.1| DNA polymerase III, delta subunit [Prevotella copri DSM 18205]
 gi|281405061|gb|EFB35741.1| DNA polymerase III, delta subunit [Prevotella copri DSM 18205]
          Length = 342

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 108/281 (38%), Gaps = 12/281 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           M   +S    +   K+L       V++  G +   I ++ +   +N+       F+  V+
Sbjct: 1   MVEKKSAISYESIMKDLKARKYSPVYVLMGEEPFYIDKICDYISENVLQPEERDFNQTVV 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116
              ++    +   +      + ++ ++++++     + + + LE+ +   +   I++   
Sbjct: 61  FGADVTG--AQVADLCKGYPMMAEYRVVVVKEAQNLRNL-EALEKYLENPVKTTILVFCH 117

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           K+ ++        +A    + +          +L   IE  L   + +I  +A Q++  +
Sbjct: 118 KNGKLDSRKKFSALA--AKAGVVFESKKLYDRNLPGFIETYLKTRKATIEPKATQMVADH 175

Query: 177 LGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           +G D     +EL K L S    D  +T + V+  I  +      E+ +A I   ++ A  
Sbjct: 176 VGADLHRLTSELDKLLISLPENDRRVTPEIVEREIGVSKDFNAFELRSAIISRDVFKANQ 235

Query: 236 LADFFLASKMPS--HALLHGFLQKFQLLEKIHIIKECSNIS 274
           + ++F ++        LL      FQ L   +      N +
Sbjct: 236 IINYFDSNPKSGSLFTLLPMLFTYFQNLMIAYYAPNRQNEN 276


>gi|309781283|ref|ZP_07676019.1| DNA polymerase III, delta subunit [Ralstonia sp. 5_7_47FAA]
 gi|308919696|gb|EFP65357.1| DNA polymerase III, delta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 358

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E ++  ++           ++ +         S       S SLF 
Sbjct: 22  PLYVVHGDEHLLALEAVDALRQAARAQGFTEREVMSVERGFSW---SRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +        A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        ++T   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++ +  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           L    K+D ++   R+     +   +  +L +A    +  +
Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353


>gi|83815422|ref|YP_444643.1| DNA polymerase III, delta subunit [Salinibacter ruber DSM 13855]
 gi|83756816|gb|ABC44929.1| DNA polymerase III, delta subunit [Salinibacter ruber DSM 13855]
          Length = 347

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 98/260 (37%), Gaps = 17/260 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F+G +  LI EL               F+L V+   E +   S            +
Sbjct: 23  PLYFFFGEETFLIDELQELLIDEALDPSQHDFNLDVVYGSETEA--SEVIGLCQGFPAGA 80

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138
            K+++++      +      ++   +     I+++       +   +  R + E  T   
Sbjct: 81  PKRVVVVREFEKLEN-NRQFKDYAAQPNPQAIVLLACTSKPNLSA-HPYRALKEHATWSE 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
             S Y DN+  +   I++ +      I  +A Q+L   +G D   + +E++KL ++  + 
Sbjct: 139 FESPY-DNE--MPGWIQDYVQGQGYEIKPKAVQMLADYVGTDLQRAASEIEKLITFAGDA 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-------HALL 251
             +T   V      T    + E+ +A  +G+  +A  + D  L              A+L
Sbjct: 196 TRLTADDVLAASGQTREFNVFELQSALGEGRPADAQRIVDRILQQASNPRSEAIMMVAVL 255

Query: 252 HGFLQKFQLLEKIHIIKECS 271
           +G+  K   L+K   ++E  
Sbjct: 256 NGYFDKLWKLQKPGALRENK 275


>gi|260893425|ref|YP_003239522.1| DNA polymerase III, delta subunit [Ammonifex degensii KC4]
 gi|260865566|gb|ACX52672.1| DNA polymerase III, delta subunit [Ammonifex degensii KC4]
          Length = 336

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 97/236 (41%), Gaps = 14/236 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++F+G ++ L  E +  F + + +   +PF    L+  E            +++ + 
Sbjct: 17  RPLYLFWGPERYLQKEAVRWF-RTLLVGEDNPFDFARLDGEETSG--EQVAAAASTSPVL 73

Query: 81  SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKF 134
           ++ ++++++N     + +K+    L + +        +I    +   ++    R +AEK 
Sbjct: 74  AQWRLVVVDNAPYFAAGKKQADRALLDYLRHPSPTTCLIFCTTAPIDRQKPACRLLAEKG 133

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             V     Y      L+  +++      K I+ EA ++LL+  G D    R E +K+ +Y
Sbjct: 134 KIVEFT--YLSPS-DLLRWLQKRAREAGKQITPEAARLLLSV-GQDLSLLRQEWEKVLNY 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             E   IT   V++++       +  + +   Q +   A+      LA K P   +
Sbjct: 190 AGEQKEITPSSVEEVVTPPPEELLFRVTDDLSQRQYLRALGRL-RMLAEKEPPGVV 244


>gi|218442578|ref|YP_002380899.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424]
 gi|218175349|gb|ACK74080.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424]
          Length = 318

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 116/315 (36%), Gaps = 23/315 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++IF+G+D  LI   I + K  +       F+           +I    N++ +     
Sbjct: 2   KIYIFHGNDDYLISLQIEEIKSKVLSPAWVNFNFTTYPPG--VNSIEQGCNDLTTQPWGE 59

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             ++IL+++     + +  +L+ ++  I     +  +I+ + ++ K   L+ +      +
Sbjct: 60  GDRLILLKDSSWLGAMDNALLNTIKSAISTAPFSSHLILTTPKLDKR--LKSV----KYL 113

Query: 138 LAISC--------YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           ++I+          P +   + + I ++      +++  A   L  ++G +      EL+
Sbjct: 114 ISIATVIKEFALMMPWDDKGIANQIRQAAASLDITLTPTALNTLAESIGNNTRLLYQELE 173

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL  YC     I    +K+++  +    +  +    +Q  I N     +  + S      
Sbjct: 174 KLKIYC-PVSPIQATDIKNLVEYSTSNSLS-LAKFLLQKDIVNVHQTLNELIHSGENYLK 231

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L      F+    +  + +   ++  ++I        P +   L++ +   +     E 
Sbjct: 232 ILSTLTTCFRQWLTVKALID-EGVNDNQLIASAANIGNPARIYYLRKEVANISLPKFIEI 290

Query: 310 LHKIDHRIHLARKKK 324
           +  +       ++  
Sbjct: 291 MGILLETEIHLKQSN 305


>gi|209526834|ref|ZP_03275354.1| DNA polymerase III, delta subunit [Arthrospira maxima CS-328]
 gi|209492705|gb|EDZ93040.1| DNA polymerase III, delta subunit [Arthrospira maxima CS-328]
          Length = 327

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 106/284 (37%), Gaps = 19/284 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   + + ++  ++++       F+   +        IS   N+  +     
Sbjct: 2   PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60

Query: 82  KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
             +++ + N    +    ++L  LE  +        ++  S       +K    L+K A 
Sbjct: 61  GHRLVWLVNTPLTQHCSPEILQELERTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYA- 119

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K     AI  +  ++  L   + E        +  E+   +   +G D      E++KL 
Sbjct: 120 KVQEFSAIPPWKTDQ--LEQRVREVAQQLGVKLKAESVAFVAEAVGNDTRQLYGEMEKLK 177

Query: 193 SYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y    D  +  + +  +I       + ++  A  +GK   A+ L    +A   P+  +L
Sbjct: 178 LYAETTDGSLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLVADLIAHNEPALKIL 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291
              + +F+    + ++ E      ++I +  E    K I  +K+
Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280


>gi|227114421|ref|ZP_03828077.1| DNA polymerase III subunit delta [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 341

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 97/252 (38%), Gaps = 9/252 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
              ++ +GSD  L+ E ++  K+      + + FS +    L++  +    ++   + SL
Sbjct: 18  RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTDWDAIFSTCQALSL 73

Query: 80  FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           F+ ++  ++++        + + L ++      + ++I++ +++ K        +     
Sbjct: 74  FASRQSLLLVLPENGPNAAMGENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQD 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C    +  L   + +     + ++  +A Q++     G+ +A    L++L+    
Sbjct: 134 SVYINCLTPEQAQLPRWVAQRAKSMKLTLDDQATQLICYCYEGNLLALSQALERLAL-LY 192

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   V+  + D         ++A + GK   A  +             LL    +
Sbjct: 193 PDGKLTLPRVESAVNDAAHFTPFHWLDALLAGKGKRAWHILQQLKQEDCEPVILLRTLQR 252

Query: 257 KFQLLEKIHIIK 268
           +   L  +    
Sbjct: 253 ELLQLLALKRRM 264


>gi|194366682|ref|YP_002029292.1| DNA polymerase III subunit delta [Stenotrophomonas maltophilia
           R551-3]
 gi|194349486|gb|ACF52609.1| DNA polymerase III, delta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 345

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 12/283 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 19  PVYLIAGPETLRVLEAADAVRARARAAGIGEREVFDADGRDF--DWNQLDATFNAPSLFS 76

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + + +       + +++I +NE  K +   K AE    +  
Sbjct: 77  ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITANEWSKAHQ-GKWAEAVNRIGV 135

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +S  +      L D IE  L          A Q L   + G+ +A+  E+ KL+      
Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  ++ AT  G+    + +            AL+   +++ 
Sbjct: 196 P-LDVERMESLVADAARYDVFRLVEATFSGQAPAVLRMLAGLRGEGEAVAALMPIVIREL 254

Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                   +     N++ E       + I   ++   + +L+ 
Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293


>gi|296314693|ref|ZP_06864634.1| DNA polymerase III, delta subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296838526|gb|EFH22464.1| DNA polymerase III, delta subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 332

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +        +A     + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++       + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAAHLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T    +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTLTIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|71898468|ref|ZP_00680640.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1]
 gi|71731781|gb|EAO33840.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1]
          Length = 343

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   +               ++  G +   + E  +  +            +  + + +
Sbjct: 2   ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +     +  N+ SLFS +++I I        K+  + +         + I++I  NE
Sbjct: 60  F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117

Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
             K +   K  +    +  I+  +      L D I   L       + +    L   L G
Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E+ KL+    +  L+  + ++  + DT    +  +  A + G+    I +   
Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A      ALL   +++      +  +K  +     ++  +    I   ++   + +L+
Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292

Query: 300 IWNKN 304
                
Sbjct: 293 RHTSP 297


>gi|325141973|gb|EGC64411.1| DNA polymerase III, delta subunit [Neisseria meningitidis 961-5945]
 gi|325197927|gb|ADY93383.1| DNA polymerase III, delta subunit [Neisseria meningitidis G2136]
 gi|325206449|gb|ADZ01902.1| DNA polymerase III, delta subunit [Neisseria meningitidis
           M04-240196]
          Length = 332

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVRLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSN 272
           + L ++  + +   
Sbjct: 253 RTLIRLAAVLKQGQ 266


>gi|301025228|ref|ZP_07188795.1| DNA polymerase III, delta subunit [Escherichia coli MS 69-1]
 gi|300396131|gb|EFJ79669.1| DNA polymerase III, delta subunit [Escherichia coli MS 69-1]
          Length = 327

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 38  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLSENGPNAAINEQLLTLTGLLHDDLLLIVR 97

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 98  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 272

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 273 ALNRLSQPQLRQAVQLLTRTELTLKQ 298


>gi|241664154|ref|YP_002982514.1| DNA polymerase III subunit delta [Ralstonia pickettii 12D]
 gi|240866181|gb|ACS63842.1| DNA polymerase III, delta subunit [Ralstonia pickettii 12D]
          Length = 358

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 118/341 (34%), Gaps = 24/341 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E ++  ++           ++ +         S       S SLF 
Sbjct: 22  PLYVVHGDEHLLALEAVDALRQAARAQGFTEREVMSVERGFSW---SRVTEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNIC----NHIIIIKSNEIKKNNTLRKIAEKFT 135
            +KI+   I +    K   + L  +          + + +I    +              
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTVTLITLPRLDFATAKSAWFAALE 138

Query: 136 SV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQ 189
              ++I     ++  L   I E L   Q+ +        A Q +   + G+ +A+  E+Q
Sbjct: 139 GAGVSIKVDSVDRTKLPGWIGERLARQQQRVEPGEPGRRALQFIADRVEGNLLAAHQEIQ 198

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL        ++T   V D + +     + ++  A + G +   + + +        +  
Sbjct: 199 KLGL-LHPPGVLTFDDVHDAVLNVARYDVFKLSEAMLAGDVPRLVRMLEGLRGEGEATVL 257

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L    ++ ++L KI             ++++    +   +  ++ ++ +  ++  +   
Sbjct: 258 VLWTLTEEIRVLSKI-ASGAAQGKPVASMLRELR--VWGPRERLVPQAAQRLSQRELEGA 314

Query: 310 LH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           L    K+D ++   R+     +   +  +L +A    +  +
Sbjct: 315 LSMAAKLDRQVKGLREPSLPAEP--WDGLLQLAMRIARPGS 353


>gi|114331416|ref|YP_747638.1| DNA polymerase III, delta subunit [Nitrosomonas eutropha C91]
 gi|114308430|gb|ABI59673.1| DNA polymerase III, delta subunit [Nitrosomonas eutropha C91]
          Length = 357

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 114/279 (40%), Gaps = 14/279 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G +  L+ E  ++ + +     +    +  ++      N    ++    +SLFS+
Sbjct: 19  LYVVLGDELLLVTEATDRIRAHAKDQGYIAREIFTIDQRFEWIN---LFHWGRQSSLFSE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSV 137
           ++I+   I +    ++    +E+       + + I+   EI K    +   K  E+   +
Sbjct: 76  RRILDLRIPSGKPGREGSMIIEKFCQHLPRDTVTIVTLPEIDKQGRASKWFKAFERTGRI 135

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I   P  +  L   I++ L   +++  ++  Q     + G+ +A+  E++KL      
Sbjct: 136 TEIK--PVRRDQLPHWIKQRLGQQKQTTDRDTLQFFADKVEGNLLAAHQEIKKLGL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +T + +++ I D     + ++  A +   +     + +      +    +L    ++
Sbjct: 193 VGKLTFEQIRNAILDVTRFDVLQLPEAMLTADMVRYNRILEGLQGEGVAPPLILAILSEQ 252

Query: 258 FQLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQ 295
            +LL KIH+ K  S  ++ E+ +      + P ++ ++ 
Sbjct: 253 IRLLIKIHLTKNSSRGMTLEQAMAALR--VWPSRQKLIA 289


>gi|121534791|ref|ZP_01666611.1| DNA polymerase III, delta subunit [Thermosinus carboxydivorans
           Nor1]
 gi|121306586|gb|EAX47508.1| DNA polymerase III, delta subunit [Thermosinus carboxydivorans
           Nor1]
          Length = 344

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 113/319 (35%), Gaps = 26/319 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +  L  E        +        +L++ +        +   + + +     
Sbjct: 17  PVYLLHGEEVYLAREFEAAIINAVLSPEERDTNLIIFDGDPA---PAELTSVVETAPFLG 73

Query: 82  KKKIILIENLSTEKKV-------------LDCLEEIIIKNICNHIIIIK-SNEIKKNNTL 127
            K ++++   +  +                + + +++       ++I + +    K   L
Sbjct: 74  DKNVVVVRETALFRASRKNTDESDAGDRDAERILKLVRNLPEYTLLIFQTAEAADKRRKL 133

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN- 186
            K  E+  + + ++        L   + + L    K I+ +A + LLA +      S   
Sbjct: 134 FKTVEERGAAVELAPLK--IKELRGWVVDKLAAAGKKIAPDALEHLLAVVSMMPQVSLGF 191

Query: 187 ---ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              EL KL+ Y     +IT + + +++     + +  +++A  Q ++  A+ L    LA 
Sbjct: 192 LAGELAKLALYTENRAIITRRDLAEVLSAVPEVSVFALVDAITQKQVGKALSLLSDQLAI 251

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                 L+    ++ ++L +   + E   +   +I +K   +    ++  L      +  
Sbjct: 252 GEHPVRLVALLARQVRMLWQAKELAE-KGLGAREIAEKLGVHPFVGEK--LARQCLQFTA 308

Query: 304 NLVRETLHKIDHRIHLARK 322
             ++E +  +       + 
Sbjct: 309 GRLKEAVLALAAADRDFKS 327


>gi|304387993|ref|ZP_07370165.1| DNA-directed DNA polymerase III delta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304337992|gb|EFM04130.1| DNA-directed DNA polymerase III delta subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 332

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 85/254 (33%), Gaps = 6/254 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVRLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSN 272
           + L ++  + +   
Sbjct: 253 RTLIRLAAVLKQGQ 266


>gi|300309928|ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1]
 gi|300072713|gb|ADJ62112.1| DNA polymerase III (delta subunit) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 339

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 102/306 (33%), Gaps = 19/306 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++    +  L  E  ++ +++     +    ++V+                 S SLF 
Sbjct: 18  PLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSF---KWGELLAANQSQSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            KK+I   I      K     L++       +++ II   ++                  
Sbjct: 75  DKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWATQKAAWVGALQQAAV 134

Query: 140 ISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
              Y D     +  L   I   L   Q+S  +     +   + G+ +A+  E+QKL+   
Sbjct: 135 ---YIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAAHQEIQKLAL-L 190

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ++ + V+D + +     + ++  A + G I     + +           +L    
Sbjct: 191 YPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGEALPLVLWAVT 250

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           ++ + L K+             ++++    I   +  +++ +LR  +   + +    +  
Sbjct: 251 EEIRTLLKLKSGM-AQGKPVGALLKEYR--IWGPRERLMEPALRRISLAALEQA---LQE 304

Query: 316 RIHLAR 321
              + R
Sbjct: 305 AALVDR 310


>gi|325287675|ref|YP_004263465.1| DNA polymerase III subunit delta [Cellulophaga lytica DSM 7489]
 gi|324323129|gb|ADY30594.1| DNA polymerase III, delta subunit [Cellulophaga lytica DSM 7489]
          Length = 333

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 103/263 (39%), Gaps = 8/263 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++    +K +       F+ +VL   ++   I    +      + +
Sbjct: 18  PIYFLMGEESYYIDKISEYIEKTVLTEEERGFNQMVLYGKDVT--IDDIVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +K++++++      + +D L           +++I  K  ++ K   L K  +K   +  
Sbjct: 76  EKQVVVVKEAQHLSRTIDNLTSYANNPQLTTVLVICYKYGKLDKRKKLYKAVQKTGVLFE 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                +N   + D I + L     +I+  A Q+L+  LG       NEL+KL     +D 
Sbjct: 136 SKSLYEN--KVADWIMKVLKGSGYTITPVAAQLLVEYLGTSLSKINNELEKLKIVITKDT 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ-K 257
            IT   +++ I  +      E+  A  +     A  + ++F  + K     +    L   
Sbjct: 194 QITPATIEEHIGISKDFNNFELKKAIGERNTLKAARIINYFAQNPKDNPFVVTVTVLHTY 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280
           F  + + H +K+ S  +  K++ 
Sbjct: 254 FTQILQYHGLKDHSKSNVAKVLG 276


>gi|289675757|ref|ZP_06496647.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 185

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            + +++A +++ A + G+ +A+  E++KL     E+  IT + V+  + D+    +  + 
Sbjct: 1   MAATQDAVELIAARVEGNLLAAAQEIEKLKLMA-EEGQITVETVQAAVADSARFDVFGLT 59

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           +A + G+  +A+ + +      + +  +L    ++ + L  +        +  +K+    
Sbjct: 60  DAVLNGEAAHALRMLEGLRGEGVETPVILWALTRELRALANMSQQF-SQGVPLDKVFSSA 118

Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETL---HKIDHRIH 318
              I   ++ ++ ++L+  +     + L    +ID +I 
Sbjct: 119 RPPIWDKRKPLMSKALQRHSAKRWSQLLMDAQRIDAQIK 157


>gi|60117405|gb|AAX14459.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 177

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           +  +F+++            + +GSD   +   + +   N+       +S+ V++   + 
Sbjct: 7   KVKRFLEQPDALSG-----VLIHGSDNSRVDFYVQEIIANLGE-----YSVQVMDFAIVN 56

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN 124
           K  S  ++E+ + S+F+ KK+I + N+S    +   L+ ++  N+  H +++ ++++  N
Sbjct: 57  KLPSLLFSELANVSMFTSKKLIKLINVSG--GISKELKNVLDYNVSGHYVMMVASDLPYN 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           +  +   E       I+CY D+  +L D+I   L       + E    L +
Sbjct: 115 SATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQS 165


>gi|15838769|ref|NP_299457.1| DNA polymerase III subunit delta [Xylella fastidiosa 9a5c]
 gi|9107318|gb|AAF84977.1|AE004031_9 DNA polymerase III, delta subunit [Xylella fastidiosa 9a5c]
          Length = 343

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 102/305 (33%), Gaps = 12/305 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   +               ++  G +   + E  +  + +          +  + + +
Sbjct: 2   ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTHARADGITEREIFDVESRD 59

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +     +  N+ SLFS +++I I        K+  + +         + I++I  NE
Sbjct: 60  F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117

Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
             K +   K  +    +  I+  +      L D I   L       + +    L   L G
Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWTIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E+ KL+    +  L+  + ++  + DT    +  +  A + G+    I +   
Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A      ALL    ++      +  +K  +     ++  +    I   ++   + +L+
Sbjct: 236 LRAEGEAVAALLPILTKELIRTTTLSWVKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292

Query: 300 IWNKN 304
                
Sbjct: 293 RHTSP 297


>gi|107021733|ref|YP_620060.1| DNA polymerase III subunit delta [Burkholderia cenocepacia AU 1054]
 gi|116688679|ref|YP_834302.1| DNA polymerase III subunit delta [Burkholderia cenocepacia HI2424]
 gi|105891922|gb|ABF75087.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116646768|gb|ABK07409.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia HI2424]
          Length = 364

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307


>gi|238026217|ref|YP_002910448.1| DNA polymerase III subunit delta [Burkholderia glumae BGR1]
 gi|237875411|gb|ACR27744.1| DNA polymerase III [Burkholderia glumae BGR1]
          Length = 379

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 104/286 (36%), Gaps = 15/286 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L+ E  ++ +           S+  +       + S+      + SLF +
Sbjct: 19  LYTVYGDEPLLVQEACDRIRAAARAGGFTERSVFTVERSF---DWSSLLGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAGAGNPDVLMLVTLPRLDAATQKSAWFTALGNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L    + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAAQGQRVAAGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +    V+D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPSGTLALDQVQDAVLNVARYDVFKLNEAMLAGDAGRLARMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +++ + L +I      +      ++++    +   +  ++  +L  
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLIGPALSR 297


>gi|170701655|ref|ZP_02892598.1| DNA polymerase III, delta subunit [Burkholderia ambifaria IOP40-10]
 gi|170133444|gb|EDT01829.1| DNA polymerase III, delta subunit [Burkholderia ambifaria IOP40-10]
          Length = 364

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307


>gi|300931574|ref|ZP_07146888.1| DNA polymerase III, delta subunit [Escherichia coli MS 187-1]
 gi|300460643|gb|EFK24136.1| DNA polymerase III, delta subunit [Escherichia coli MS 187-1]
          Length = 319

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 30  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNGAINEQLLTLTGLLHDDLLLIV- 88

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 89  -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 143

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 144 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 202

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 203 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 258

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 259 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 290


>gi|210633895|ref|ZP_03297910.1| hypothetical protein COLSTE_01827 [Collinsella stercoris DSM 13279]
 gi|210159064|gb|EEA90035.1| hypothetical protein COLSTE_01827 [Collinsella stercoris DSM 13279]
          Length = 321

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 115/294 (39%), Gaps = 15/294 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST--FWNEINSTSL 79
             ++  GSD+      + + +  +  T    F+   L+  ++ K+         +N+  +
Sbjct: 8   PGYLIVGSDELKSSHAVERMRSRLEKTGMAEFN---LDERDMAKDPQIDDIIASLNTFPM 64

Query: 80  FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            ++ +++++ N     K V + L E         + ++ +  + KN  L K  +K  +  
Sbjct: 65  GAEFRLVILTNCDKLPKAVSEPLVEYFSNPSPTTVCLVVATSLAKNTRLYKAIKKLGAKA 124

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I C P     +   + +      KS+   A + L+A  G +     NEL+KL+S     
Sbjct: 125 IIECAPKKTWEMPPQVVKMAAAHGKSMGIPAAEALVARSGENTRMLDNELKKLASMVEGP 184

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD-FFLASKMPSHALLHGFLQK 257
             IT   V+  +  T  +   E +NA     +  ++ L       S++   +LL   L++
Sbjct: 185 -EITLADVERHVMRTAEVKPWEFLNAVAARDLARSLELLALQPAKSEVRLWSLLVTRLRE 243

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
             + + +    + S ++    +Q          +N L  + R W  + + + L 
Sbjct: 244 LIIAKSLDARGQGSQLASTLGVQS------WQVKNHLGWA-RRWRMDELLDALT 290


>gi|86132283|ref|ZP_01050878.1| DNA polymerase III delta subunit [Dokdonia donghaensis MED134]
 gi|85817202|gb|EAQ38385.1| DNA polymerase III delta subunit [Dokdonia donghaensis MED134]
          Length = 334

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 100/264 (37%), Gaps = 10/264 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  + N+       F+ VVL   ++   I    +      + +
Sbjct: 18  PIYFLSGEEPYFIDQITDYIEHNLLDEAEKGFNQVVLYGRDVS--IEDIVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFT-SVL 138
           ++++++++      + ++ L E +       ++++  K  ++ K   L K  +       
Sbjct: 76  ERQVVIVKEAQDLSRTIEKLAEYVKNPQPTTVLVVAYKYKKLDKRKGLSKALKTHGVHYE 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +   Y +        +   L+     I  +A Q+L+  LG D     NEL KL     + 
Sbjct: 136 SKKLYENQVGD---WLRRVLIDEGYHIQPKAAQMLVDYLGNDLSKVVNELNKLMLILPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT Q +++ I  +    I E+  A  +  +  A  +A +F  +    P    +     
Sbjct: 193 SEITPQAIEENIGISKDFNIFELRKAISEKDVVKAQRIAQYFTQNPKDNPLVLTVGQLFS 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280
            F  + K H + +    +  K + 
Sbjct: 253 LFSSILKYHGLPQKDKATVAKTLG 276


>gi|325203795|gb|ADY99248.1| DNA polymerase III, delta subunit [Neisseria meningitidis
           M01-240355]
          Length = 332

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|115350605|ref|YP_772444.1| DNA polymerase III subunit delta [Burkholderia ambifaria AMMD]
 gi|115280593|gb|ABI86110.1| DNA polymerase III, delta subunit [Burkholderia ambifaria AMMD]
          Length = 364

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307


>gi|294506395|ref|YP_003570453.1| DNA polymerase III delta subunit [Salinibacter ruber M8]
 gi|294342723|emb|CBH23501.1| DNA polymerase III delta subunit [Salinibacter ruber M8]
          Length = 347

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 98/260 (37%), Gaps = 17/260 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F+G +  LI EL               F+L V+   E +   S            +
Sbjct: 23  PLYFFFGEETFLIDELQELLIDEALDPSQHDFNLDVVYGSETEA--SEVIGLCQGFPAGA 80

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138
            K+++++      +      ++   +     I+++       +   +  R + E  T   
Sbjct: 81  PKRVVVVREFEKLEN-NRQFKDYAAQPNPQSIVLLACTSKPNLSA-HPYRALKEHATWSE 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
             S Y DN+  +   I++ +      I  +A Q+L   +G D   + +E++KL ++  + 
Sbjct: 139 FESPY-DNE--MPGWIQDYVQGQGYEIKPKAVQMLADYVGTDLQRAASEIEKLITFAGDA 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-------HALL 251
             +T   V      T    + E+ +A  +G+  +A  + D  L              A+L
Sbjct: 196 TRLTADDVLAASGQTREFNVFELQSALGEGRPADAQRIVDRILQQASNPRSEAIMMVAVL 255

Query: 252 HGFLQKFQLLEKIHIIKECS 271
           +G+  K   L+K   ++E  
Sbjct: 256 NGYFDKLWKLQKPGALRENK 275


>gi|84394386|ref|ZP_00993105.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01]
 gi|84374988|gb|EAP91916.1| DNA polymerase III subunit delta [Vibrio splendidus 12B01]
          Length = 341

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 111/303 (36%), Gaps = 11/303 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  L+ E     +K         F      A++   + +  ++   + SLFS
Sbjct: 18  NVYLIFGNEPLLLQESREAIQKAAKQQG---FEERHRFAIDNSLDWNQVYDCTQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS-VL 138
            ++II +E         +   L  I      + ++++   ++ K     K  +  ++   
Sbjct: 75  SRQIIELELPESGVNAAIAKELLAISEHIHSDILLVLIGTKLTKAQESAKWFKALSNQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +SC   +   L   ++        S   EA Q+L     G+  A    L+KL+     D
Sbjct: 135 WVSCLTPDVSRLPQFVQARCRQIGLSPDPEAIQMLAQWHEGNLFALTQSLEKLAL-QYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   +++ +   +        +A + GK   A  +     A  +    LL    ++ 
Sbjct: 194 GKLTLVRLEESLSRHNHFTPFHWSDALLAGKGNRAQRILRQLEAEGVEPVILLRSIQREL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
            LL +  + ++   +   ++ +K    I   K+ +   +L   + + +      +     
Sbjct: 254 ALLLQ--MQQQMKQMPIGQVFEKHR--IWQSKKPLYNAALTRVSISQLHSLFALLTQAEL 309

Query: 319 LAR 321
           + +
Sbjct: 310 MTK 312


>gi|300865554|ref|ZP_07110333.1| DNA polymerase III subunit delta [Oscillatoria sp. PCC 6506]
 gi|300336426|emb|CBN55483.1| DNA polymerase III subunit delta [Oscillatoria sp. PCC 6506]
          Length = 325

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 102/293 (34%), Gaps = 17/293 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++F+G D   + + ++  ++ +       F+   +   +    IS   N+  +    + 
Sbjct: 3   IYLFWGEDDFSLTQAVDTLRQKVIDPNWASFNYDKILPDQGDAVISAL-NQAMTPPFGAG 61

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            + + + +    ++    L   + +         ++++ +   K ++ L+       S  
Sbjct: 62  SRFVWLADTPITQQCSQELFAELERTLPVIPSTTVLLLTTRN-KPDSRLKSTKFLLKSAE 120

Query: 139 A-----ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 I  +   +  L   + +        ++  A  +L   +G D     +EL KL  
Sbjct: 121 VREFSPIPPWKTEE--LAKRVRQVAEGRGVKLTPAAIALLAECVGNDTRQLNSELDKLEL 178

Query: 194 YCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           Y       + ++ +  ++       ++ +  A  QG    A+ L    +    P+  ++ 
Sbjct: 179 YAGNSNQPLGDEAIAALVRSNTQNSLQ-LAAAIRQGNTAQALQLVAELIGHNEPALKIVA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +F++   + +  +      ++ I +  +   P +    ++ ++      
Sbjct: 238 TLTTQFRIWLWVKLGTQAGE--PDEKIAQAAEISNPKRIYFFRQEVKSLTVEK 288


>gi|172059638|ref|YP_001807290.1| DNA polymerase III subunit delta [Burkholderia ambifaria MC40-6]
 gi|171992155|gb|ACB63074.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MC40-6]
          Length = 364

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFAALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEPVLEKAL 307


>gi|291567165|dbj|BAI89437.1| DNA polymerase III delta subunit [Arthrospira platensis NIES-39]
          Length = 327

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 106/284 (37%), Gaps = 19/284 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   + + ++  ++++       F+   +        IS   N+  +     
Sbjct: 2   PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60

Query: 82  KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
             +++ + N    +    ++L  L+  +        ++  S       +K    L+K A+
Sbjct: 61  GHRLVWLVNTPLTQHCSPEILQELDRTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYAQ 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 AI  +  ++  L   + E        +  E+ + L   +G D      E++KL 
Sbjct: 121 -VKDFSAIPPWKTDQ--LEQRVREVAQQLGVKLKPESVEFLAEAVGNDTRQLYGEMEKLK 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y       +  + +  +I       + ++  A  +GK   A+ L    +A   P+  +L
Sbjct: 178 LYADTIDRPLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLIADLIAHNEPALKIL 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291
              + +F+    + ++ E      ++I +  E    K I  +K+
Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280


>gi|283780891|ref|YP_003371646.1| DNA polymerase III subunit delta [Pirellula staleyi DSM 6068]
 gi|283439344|gb|ADB17786.1| DNA polymerase III, delta subunit [Pirellula staleyi DSM 6068]
          Length = 370

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 125/337 (37%), Gaps = 32/337 (9%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
           TI +  F+    +       +   +G ++ L   ++ +  K ++ +  D      ++  E
Sbjct: 4   TITAFDFLA-PGQKPASLSGICALFGDERFLRQLVLAKLVKLVTDSSGDDLY-TKVDVSE 61

Query: 63  IQKNISTFWNEINSTSLFSK--KKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSN 119
                    +E+++ +LF     +++++E+  +        LE+   K+    ++++  +
Sbjct: 62  RPIAWRDIADELSTANLFGGGGARLVVLESADSWVSAHRAELEDWAAKSKPQGLLVLVVD 121

Query: 120 EIKKNNTLRKIAEKF---------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
           E   N  L K  ++             +  +   D       ++E +  +    +S+ A 
Sbjct: 122 EWPSNTRLYKAMDQSHLQVDCRLPQKAVGKNKVTDEGAICRWVVERAKSVYGIGLSQHAS 181

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           + LL   G        +L KLS     D  +  + V+  +         ++I+A ++G+ 
Sbjct: 182 EKLLELTGPSMGMLDQDLAKLSLLAGGDGRVGVELVESAVGGWRAQSNWDLIDAALEGRA 241

Query: 231 YNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
            +AI   +  L S     A+       L++F    + +   E S    +           
Sbjct: 242 ADAISQLEKLLHSGEHPLAIFGSLSWSLRRFAQAARHYQDAEDSGRRIQ----------- 290

Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            ++  + +   + W +  +++   ++   I L RK+ 
Sbjct: 291 -LREALTEAGFKEWPQGAMQKAEQRL---IALGRKRA 323


>gi|162453574|ref|YP_001615941.1| putative DNA polymerase III, delta subunit [Sorangium cellulosum
           'So ce 56']
 gi|161164156|emb|CAN95461.1| putative DNA polymerase III, delta subunit [Sorangium cellulosum
           'So ce 56']
          Length = 358

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 112/345 (32%), Gaps = 36/345 (10%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V++  G ++ L+  +++  ++  +      F+     A +    + +         + 
Sbjct: 16  RPVYLVLGEERWLVDRVVSAIREAAAKGGIAGFNEDKFTAGD--APVESILGAARMLPMM 73

Query: 81  SKKKIILIEN-----------------------LSTEKKV------LDCLEEIIIKNICN 111
           + ++ +L+                          S ++ V      LD L E       +
Sbjct: 74  APRRFVLVRGVDRWEKKDDGDDGEGDDERGASGASGKRGVSKQLSPLDALAEYAKAPSPS 133

Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
            ++++ + ++     L   A+K   ++   C P N+  L   I          I+ +   
Sbjct: 134 AVLVLVATKLHGQRRLVTAAKKGDFLV--GCEPLNRRALPGFIATVAREKGNPIAPDVAD 191

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            L    G +     + L++LS Y      ITE  +  ++       + E+I+A  + ++ 
Sbjct: 192 QLAELAGPELGYVVDALERLSLYVGPKQPITEDAIAQVVIRVRQSTVWELIDALGKRRLD 251

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
            A+         +     LL       + + K             +        + P K 
Sbjct: 252 RALAALADAYDPRDGGLRLLGAVSWSVRQMVKFESALAGG---ASQAEAAQRAGVAPFKA 308

Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           N + +S+R   K  +   +  +       +  +   + ++   ++
Sbjct: 309 NDVAQSVRQLPKGALAGWMRVLAETDLALKSSRRPAQAVLETMLM 353


>gi|124006637|ref|ZP_01691469.1| DNA polymerase III, delta subunit [Microscilla marina ATCC 23134]
 gi|123987792|gb|EAY27483.1| DNA polymerase III, delta subunit [Microscilla marina ATCC 23134]
          Length = 353

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 117/310 (37%), Gaps = 19/310 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +   + ++ +  +KN+   +   F+ +VL   +   N+ T         + +
Sbjct: 31  PIYFLHGDESYYLDQISDFIEKNVLQEHEKGFNQIVLYGKDT--NLGTIVQNARRFPMMA 88

Query: 82  KKKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKF 134
           +K++++++        ++      +E  I +   + +++         KN TL K+ +K 
Sbjct: 89  EKQVVIVKEAQQLADWSKADSKKIIEAYIKQPQPSTVLVFNHKHKSFNKNTTLYKLFDKQ 148

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + +      +  +   IE          + +A  +L  ++G D    + E+ KL   
Sbjct: 149 --AVVVESKKIREHQVGGWIEGYFKQKGYQANFKATAMLTESIGADLGRLQTEIDKLLLN 206

Query: 195 CLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALL 251
             +    I E  V++ +  +    I E+  A      Y    +  ++ A+    P    +
Sbjct: 207 VNDQSKPIDEHLVEEHVGISKAYNIFELQKALGVKDWYKIRQILMYWEANPKSQPLIPTI 266

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               Q F  L   H + + S+ +  K+++ +          +   ++R ++   V   +H
Sbjct: 267 AMIFQYFCKLLVGHRVTDKSDQNLAKVLKVS--PYFVKDYKV---AMRHYSLGKVVHIIH 321

Query: 312 KIDHRIHLAR 321
            +      ++
Sbjct: 322 YLREADLQSK 331


>gi|283784419|ref|YP_003364284.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168]
 gi|282947873|emb|CBG87434.1| DNA polymerase III, delta subunit [Citrobacter rodentium ICC168]
          Length = 343

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 20/266 (7%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + +  +++  + SLF+ ++  ++L+        + + L  +      + ++I+      +
Sbjct: 60  DWNALFSQCQAMSLFASRQTLLLLLPENGPNAAINEQLATLTQLLHDDLLLIV------R 113

Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N L K  E    + A++       C       L   +          +   A Q+L   
Sbjct: 114 GNKLTKAQENAAWISALADRSVLVSCQTPEHAQLPRWVAARAKQKNLQLDDAANQLLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALVMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R +L E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMLGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +   +R+ +  +       ++
Sbjct: 289 ALNRLSPAQLRQAVQLLTRTELTLKQ 314


>gi|330815529|ref|YP_004359234.1| DNA polymerase III [Burkholderia gladioli BSR3]
 gi|327367922|gb|AEA59278.1| DNA polymerase III [Burkholderia gladioli BSR3]
          Length = 385

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +           S+  +       + S+      + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAGFTERSVFTVERSF---DWSSLLGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +        ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAGAGNPEVLMLVTLPRLDAATQKSAWFTALGNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L    + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAAQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +  + V+D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPSGTLAFEQVQDAVLNVARYDVFKLNEAMLAGDAGRLARMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I    E        ++++    +   +  ++  +L    + ++ + L
Sbjct: 255 VEELRTLLRIKRGIEA-GKPLAVLVRENR--VWGPRERLIGPALSRVTEPVLEKAL 307


>gi|315635074|ref|ZP_07890354.1| DNA-directed DNA polymerase III delta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476195|gb|EFU66947.1| DNA-directed DNA polymerase III delta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 346

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 115/318 (36%), Gaps = 28/318 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++   G D  LI E ++  ++       D    + +NA     + +  + ++ S  LF  
Sbjct: 20  LYFLVGEDPLLIEESLDAIQQAAMKALFDEKIQLEINAST---DWNDLFEQVQSMGLFFN 76

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEK------- 133
           K+II++        + + L  ++   +   I ++  + +   +   L K  EK       
Sbjct: 77  KQIIVL-------DLPENLTALLQNKLSEFISLLTPDVLPVFRFAKLTKTMEKQAWFVAA 129

Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                  + I+C   N   L   +         SI +EA Q+L  +   + +A +  LQ 
Sbjct: 130 NQYEPQAIVINCQTPNAEQLPRWVVNRAKSLGLSIEQEAVQLLCYSYENNLLALKQTLQL 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      D  +T   V  ++  + V    + ++A + GK   A  + +      +    L
Sbjct: 190 LDL-LYPDHKLTFARVNSVVEQSSVFTPFQWVDAMLAGKASRACRILNGLKEEDVQPIVL 248

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305
           L    +    L ++    +  ++       +  ++     +   +R +  ++++      
Sbjct: 249 LRTLQRDLMTLLELSKTGQRPSLDSLLPTSQLREHFDRLKVWQNRRALFTQAVQRLTYRK 308

Query: 306 VRETLHKIDHRIHLARKK 323
           +     ++      A+++
Sbjct: 309 LYLFCQQLAEVERSAKQE 326


>gi|163781864|ref|ZP_02176864.1| hypothetical protein HG1285_03238 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883084|gb|EDP76588.1| hypothetical protein HG1285_03238 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 338

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 120/307 (39%), Gaps = 24/307 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + +G ++ L+  LI++ K   +      F+L   + LE+  ++   ++E +  S  ++K 
Sbjct: 23  LVHGEEEFLVRTLIDKLKNKFAEN----FTLTWGDELEL-GDLYELFSEGSIFSATTEKA 77

Query: 85  IIL------IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           +++      ++ L  +KK  + L +++       +  +  +++      R   E + +  
Sbjct: 78  VVIMKFDEFLKKLGRKKKNTENLTDLLKNLKSTKLFAVVGHKLTAQELSR---EPYKTFS 134

Query: 139 AIS--CYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           A+      D      + D++ +      K I +EA  +L+   GG+ +  ++E +KL +Y
Sbjct: 135 ALGDIILADRLPTKRVKDIVRKKFEREAKGIEEEALDLLVEMCGGNLMVLKHESEKLIAY 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + VK++        + ++I++  +      + +         P   +L   
Sbjct: 195 SEGRK-VTREDVKNVCFPWEDHTLFDLIDSFFERDAERTLRVLRDAYRKGTPPIQILGML 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL---VRETLH 311
                 L  +  +          + +   K+     +   +  L    K     + E L+
Sbjct: 254 SGYVTKLYVVQELLSEGERLDNALEKVGVKHQF--AKLKFKNYLDKTPKERARELLEALY 311

Query: 312 KIDHRIH 318
           ++D+ I 
Sbjct: 312 RLDYAIK 318


>gi|170679792|ref|YP_001742756.1| DNA polymerase III subunit delta [Escherichia coli SMS-3-5]
 gi|170517510|gb|ACB15688.1| DNA polymerase III, delta subunit [Escherichia coli SMS-3-5]
          Length = 343

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ +++    +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|78065218|ref|YP_367987.1| DNA polymerase III subunit delta [Burkholderia sp. 383]
 gi|77965963|gb|ABB07343.1| DNA polymerase III, delta subunit [Burkholderia sp. 383]
          Length = 364

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 110/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  +  +       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLALQGQRAAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++   L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLERAL 307


>gi|332290731|ref|YP_004429340.1| DNA polymerase III, delta subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168817|gb|AEE18072.1| DNA polymerase III, delta subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 334

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 100/264 (37%), Gaps = 10/264 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  + N+       F+ VVL   ++   I    +      + +
Sbjct: 18  PIYFLSGEEPYFIDQISDYIEHNLLDEAEKGFNQVVLYGRDVT--IEDIVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIA-EKFTSVL 138
           ++++++++      + ++ L + +       ++++  K  ++ K   L K   E      
Sbjct: 76  ERQVVIVKEAQDLSRQIEKLADYVKNPQPTTVLVVAYKYKKLDKRKGLAKALKEYGVHYE 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +   Y +        +   L+     I  +A QIL+  LG D     NEL KL     + 
Sbjct: 136 SKKLYENQVGD---WLRRVLIDEGYHIQPKAAQILVDYLGNDLGKVINELNKLMLILPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT Q +++ I  +    I E+  A  +  I  A  +A +F  +    P    +     
Sbjct: 193 SEITPQAIEENIGISKDFNIFELRKAISEKDIVKAQRIAQYFTQNPKDNPLVLTVSQLFS 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280
            F  + K H + +    +  + + 
Sbjct: 253 LFASILKYHGLPQKDKTTVARALG 276


>gi|326335571|ref|ZP_08201758.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692337|gb|EGD34289.1| DNA polymerase III subunit delta [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 345

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 122/321 (38%), Gaps = 16/321 (4%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           E  K + +  KN +    ++   G     I  + N  ++N+       F+  V+   +I 
Sbjct: 15  EVEKILAELKKNNYS--PIYYLSGEVPYFIDLISNYIEENVLSEEEKAFNQQVIYGKDIT 72

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIK 122
             I +  +      + +++++I+++      + +  L   +       ++++  K  +I 
Sbjct: 73  --IDSLIHYAREYPMMAQRRVIIVKEAQELSRTIAQLLPYVENPSPTTLLVLCYKYGKID 130

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
               L K  +K+        Y ++       I   L     +I++ A Q+L++ LG D  
Sbjct: 131 GKTKLAKELKKYVYFEGKKLYENDT---AKWISSYLKESGYTITQIASQLLISFLGTDLS 187

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              NEL KL     +   IT  H++  I  +    + E+ NA  Q  I  AI +  +F  
Sbjct: 188 RIANELNKLKIILTKGTEITPAHIEQNIGISKDFNVYELQNAIGQKDIPKAIQIIKYFNE 247

Query: 243 S-KMPSHALL-HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           + K    A++     + F+ L    I    +  S  ++ ++   N   +K   L  +   
Sbjct: 248 NQKDNPIAMITENLYRYFRNLF---IYSSSTGKSDAELAREMGINPYFLKDYRLAAA--K 302

Query: 301 WNKNLVRETLHKIDHRIHLAR 321
           +    +   +  I      ++
Sbjct: 303 YPLRKISFCMEVIKEADLKSK 323


>gi|225849236|ref|YP_002729400.1| DNA polymerase III subunit delta [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643253|gb|ACN98303.1| DNA polymerase III, delta subunit superfamily [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 330

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 115/330 (34%), Gaps = 45/330 (13%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSD---KGLIFELINQFKKNISITYHDPFSLVV 57
           M  I+  + +++   NL     + + YG++   K L  E +     +        F    
Sbjct: 1   MNEIKIQQLLKEY--NLSNLKPLILIYGNEELTKSLFLEKVKSTTASTV------FWGDS 52

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC------LEEIIIKNICN 111
           L+         T  NE+ + SLF  +K I+++N       L        LE +   N+  
Sbjct: 53  LDFK-------TLLNELGTKSLFQTEKTIIVKNFDEFVSNLKKDEIKLFLETLKKVNLPT 105

Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAI------SCYPDNKIHLMDLIEESLLIGQKSI 165
             I++ S E   +    K       +L        + Y          I+  L    K I
Sbjct: 106 RFIMVCSFEKIPSTEPYKTITTLADILVSTKLTPSAFY--------TSIKNKLSRESKKI 157

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
           S+E  + L++ L  D   ++NE++KL  Y  +   IT++ +  +I       +   +   
Sbjct: 158 SEEDLKYLVSLLNNDLTLAKNEIEKLLLYTADKDTITKEDIDAVITPKFEDNVFVFLTQF 217

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTE 283
            +     A+      + +      +    L + +       + E         K +  T 
Sbjct: 218 FKKD-KTALKTLLNLIENGSHPFEIQSLILYQLEKTLYFKSLIEKGIDQEEAFKTVGITA 276

Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKI 313
                ++++ +   L++  +  + + +  +
Sbjct: 277 P----IQKSNILNILKVLKEEDLEKLIKGL 302


>gi|71276303|ref|ZP_00652581.1| DNA polymerase III, delta subunit [Xylella fastidiosa Dixon]
 gi|71900279|ref|ZP_00682415.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1]
 gi|170730504|ref|YP_001775937.1| DNA polymerase III subunit delta [Xylella fastidiosa M12]
 gi|71162911|gb|EAO12635.1| DNA polymerase III, delta subunit [Xylella fastidiosa Dixon]
 gi|71729927|gb|EAO32022.1| DNA polymerase III, delta subunit [Xylella fastidiosa Ann-1]
 gi|167965297|gb|ACA12307.1| DNA polymerase III delta subunit [Xylella fastidiosa M12]
          Length = 343

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 101/305 (33%), Gaps = 12/305 (3%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +   +               ++  G +   + E  +  +            +  + + +
Sbjct: 2   ELRPEQLANLPANQPLE--PAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRD 59

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +     +  N+ SLFS +++I I        K+  + +         + I++I  NE
Sbjct: 60  F--DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNE 117

Query: 121 IKKNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
             K +   K  +    +  I+  +      L D I   L       + +    L   L G
Sbjct: 118 WSKAHH-GKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHQLSTRLEG 176

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A+  E+ KL+    +  L+  + ++  + DT    +  +  A + G+    I +   
Sbjct: 177 NLLAAAQEIDKLAL-LNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGK 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
             A      ALL   +++      +   K  +     ++  +    I   ++   + +L+
Sbjct: 236 LRAEGEAVAALLPILIKELIRTTTLSWAKHDNGNLAAEMKAQ---GIWETRQAPFKRALQ 292

Query: 300 IWNKN 304
                
Sbjct: 293 RHTSP 297


>gi|20807423|ref|NP_622594.1| DNA polymerase III delta subunit [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515945|gb|AAM24198.1| DNA polymerase III delta subunit [Thermoanaerobacter tengcongensis
           MB4]
          Length = 338

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 124/312 (39%), Gaps = 19/312 (6%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F++   K       +++FYG ++ L+ + + + K  + +   +  + +V+     ++ +
Sbjct: 5   EFVESIKKGQIA--PLYLFYGEERFLLLDAVKRLKARLLVPEFEDMNYIVIERENPEEYV 62

Query: 68  STFWNEINSTSLFSKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKS 118
                   +   FS  KI++++N   +         K++ D  +  ++ N    ++++  
Sbjct: 63  EAIIENCETLPFFSNYKIVVVKNEEEQLSKIGDKELKRLTDYFKNRVLGNTSLVVVVVSG 122

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
            +I     L K  EK  +V+      P+  ++      +           E+   L+ N+
Sbjct: 123 EKIDSRKKLYKFMEKEAAVVEFKKLTPEEAVNYAGYFLKKHGKKAAKKDVES---LVKNI 179

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G D  +  NEL+K+ +Y   +  +  +  ++++  T    +  ++NA    K   A    
Sbjct: 180 GTDLYSIVNELEKVIAYSEGE-TLDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRAL 238

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              L+       +L    ++ +L+ K+  +      +F+K    +   I     + +   
Sbjct: 239 YALLSKGEVPLIILTMIARQIRLIAKLKSL---EGKAFDKKSIASYLGIPFFAVDDIVRQ 295

Query: 298 LRIWNKNLVRET 309
            +++ +  + + 
Sbjct: 296 SKLFTREDLYKA 307


>gi|206561708|ref|YP_002232473.1| DNA polymerase III subunit delta [Burkholderia cenocepacia J2315]
 gi|198037750|emb|CAR53694.1| putative DNA polymerase III delta subunit [Burkholderia cenocepacia
           J2315]
          Length = 364

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  +  +       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRAAPGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307


>gi|218699012|ref|YP_002406641.1| DNA polymerase III subunit delta [Escherichia coli IAI39]
 gi|218368998|emb|CAR16752.1| DNA polymerase III, delta subunit [Escherichia coli IAI39]
          Length = 343

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 100/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+ +      + + L  +      + ++I+ 
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPDNGPNAAINEQLLTLTGLLHDDLLLIV- 112

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + + L K  E      A++       C    +  L   +          +   A 
Sbjct: 113 -----RGSKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPHWVAARAKQLNLELDDAAN 167

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 283 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|300907816|ref|ZP_07125433.1| DNA polymerase III, delta subunit [Escherichia coli MS 84-1]
 gi|300400505|gb|EFJ84043.1| DNA polymerase III, delta subunit [Escherichia coli MS 84-1]
          Length = 326

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 37  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 95

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 96  -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 150

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 151 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 209

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 210 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 265

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 266 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 297


>gi|284051890|ref|ZP_06382100.1| DNA polymerase III subunit delta [Arthrospira platensis str.
           Paraca]
          Length = 327

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 106/284 (37%), Gaps = 19/284 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   + + ++  ++++       F+   +        IS   N+  +     
Sbjct: 2   PIYLYWGDDDFSLSKAVDTLRESVVDPNWSSFNFDKILPDTPDSVISGL-NQAMTPPFGL 60

Query: 82  KKKIILIENLSTEK----KVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
             +++ + N    +    ++L  L+  +        ++  S       +K    L+K A+
Sbjct: 61  GHRLVWLVNTPLTQHCSPEILQELDRTLPAIPETTTLLFSSPNKPDGRLKSTKLLQKYAQ 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 AI  +  ++  L   + E        +  E+ + L   +G D      E++KL 
Sbjct: 121 -VKDFSAIPPWKTDQ--LEQRVREVAQQLGVKLKPESVEFLAEAVGNDTRQLYGEMEKLK 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y       +  + +  +I       + ++  A  +GK   A+ L    +A   P+  +L
Sbjct: 178 LYADTIDRPLDIKTITPLIHSNTQNSL-KLAIAIREGKTSQALGLIADLIAHNEPALKIL 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKR 291
              + +F+    + ++ E      ++I +  E    K I  +K+
Sbjct: 237 ATLVGQFRTWLWVKLMIETGTRDDQEIARLAEVGNPKRIYFLKK 280


>gi|158320259|ref|YP_001512766.1| DNA polymerase III, delta subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140458|gb|ABW18770.1| DNA polymerase III, delta subunit [Alkaliphilus oremlandii OhILAs]
          Length = 344

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 118/305 (38%), Gaps = 19/305 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F G +  LI + + + K  +        +  +L+  E+   I    +   +    +
Sbjct: 17  NVYLFAGEEVFLIDDALERLKSTVLNAGFQELNFTILDGKEVS--IHQITDACETLPFMA 74

Query: 82  KKKIILIENL----STEKKVLDCLEEIII---KNICNHIIIIKSNEIKKNNTLRKIAEKF 134
           ++K++ ++N+    S  K + +  E+ II   K I +   ++       ++  + + E  
Sbjct: 75  ERKLVYLKNMDVFQSKSKSISEEQEQYIIDYIKKIPDTTTLVFWGNTTVDSRKKIVKEIN 134

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------GDRIASRNE 187
                + C    +  L   I++      K I  +    +  NL           +   NE
Sbjct: 135 KYGHFVECSKLTEDELGKWIKKMFKAYGKIIEAKEISFIKGNLDYLGKTSTQTLLDVENE 194

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+K+ S+  +   +T +H++ I+       I +++++       ++I   ++ L    P 
Sbjct: 195 LKKIISFMGQASEVTTEHIEKILTSNFQNNIFKLLDSIEGRNSSDSIKRLNYILEDGEPI 254

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +L     + + +    ++ E    S    +  T+ NI P   +      R +    ++
Sbjct: 255 LKILATLGNQIKNILFSKVLLEEGYTSK---MIATKLNIHPFVASKCAAQSRRFTVERLK 311

Query: 308 ETLHK 312
           E L+K
Sbjct: 312 ELLNK 316


>gi|134294736|ref|YP_001118471.1| DNA polymerase III subunit delta [Burkholderia vietnamiensis G4]
 gi|134137893|gb|ABO53636.1| DNA polymerase III, delta subunit [Burkholderia vietnamiensis G4]
          Length = 364

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVAPGEDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                ++  + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLAFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIKRGA-SAGKPLATLLRENR--VWGPRERLIAPALNRVSEAMLEKAL 307


>gi|113869091|ref|YP_727580.1| DNA polymerase III subunit delta [Ralstonia eutropha H16]
 gi|113527867|emb|CAJ94212.1| DNA polymerase III delta subunit [Ralstonia eutropha H16]
          Length = 352

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 108/291 (37%), Gaps = 15/291 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ E +++ +          FS   +   E   +         S SLF 
Sbjct: 22  PLYVVHGDEHLLVLEAVDRLRAAAREAG---FSERDVLVAERGFHWGQLVEAQQSMSLFG 78

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
            +KI+   I +    K   + L  +  +   + ++++    +    +     +      +
Sbjct: 79  DRKIVELRIPSGKPGKDGGEALRAVAAQPSPDVVLLVTLPRLDFAASKSAWFQALEGAGV 138

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSS 193
           +I     ++  L   + E L + Q+ +      + A Q +   + G+ +A+  E+QKL  
Sbjct: 139 SIKVDSVDRTRLPAWVGERLSLQQQRVEGGEPGRRALQFIADKVEGNLLAAHQEIQKLGL 198

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  +T   V D + +     + ++  + + G +   + + +        +  +L  
Sbjct: 199 -LYPPGELTFDQVHDAVLNVARYDVFKLSESMLSGDVPRLVRMLEGLRGEGEATVLVLWA 257

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             ++ ++L K+      +      ++++    +   +  ++ ++ +   + 
Sbjct: 258 LTEEIRVLSKVR-QGLAAGKPAGVLMRELR--VWGPRERLVPQAAQRLAQP 305


>gi|331682064|ref|ZP_08382688.1| DNA polymerase III, delta subunit [Escherichia coli H299]
 gi|331080743|gb|EGI51917.1| DNA polymerase III, delta subunit [Escherichia coli H299]
          Length = 343

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ +++    +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHMPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLARTELTLKQ 314


>gi|163791514|ref|ZP_02185919.1| DNA polymerase III subunit delta [Carnobacterium sp. AT7]
 gi|159873194|gb|EDP67293.1| DNA polymerase III subunit delta [Carnobacterium sp. AT7]
          Length = 305

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 89/242 (36%), Gaps = 12/242 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIEN---LSTEKKVLDC------LEEIIIKNICNHIIIIK 117
           I T   +  S   F +++++ ++    L+ EK            E  + +   +  +++ 
Sbjct: 60  IGTALEDAESIPFFGERRVVFVDRPVFLTGEKTKSKIEHDLKWFENYLTRPSESTTLVLF 119

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           +   K +   +       +   +     ++  +   I++++       S EA ++ +   
Sbjct: 120 APYEKLDERKKITKLLKKTATVLEVNALSEKEMRKYIKDTISNEGYRYSPEAFELFIQLT 179

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
                 +  EL KL  Y  E   IT + V++++  +    I  +    ++  +  A+ L 
Sbjct: 180 DAKLSVAMGELPKLFLYAQETKFITIEAVQELVAKSLEQNIFALNEYVLKKDVGQALNLY 239

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              L  K     +      +F+LL ++ I+ E        I +  +    P +  +  + 
Sbjct: 240 QDLLLQKEDPIKINAIMTAQFRLLIQVKIL-EKKGYQQGDIAKLLK--THPYRVKLAIQQ 296

Query: 298 LR 299
           +R
Sbjct: 297 MR 298


>gi|300901149|ref|ZP_07119256.1| DNA polymerase III, delta subunit [Escherichia coli MS 198-1]
 gi|300355416|gb|EFJ71286.1| DNA polymerase III, delta subunit [Escherichia coli MS 198-1]
          Length = 325

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 36  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 96  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 270

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 271 ALNRLSQPQLRQAVQLLTRTELTLKQ 296


>gi|145588422|ref|YP_001155019.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046828|gb|ABP33455.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 353

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 119/327 (36%), Gaps = 23/327 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ +   KS     +   ++IF G +  L+ E ++Q  ++++      F+   +  
Sbjct: 1   MVKVDALQTHLKSLNAGGVMGSLYIFSGDEPLLMMEAMDQL-RSVAKKLG--FTEREVLL 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIII--------KNIC 110
            E   + S   N   + SLF  K+ +   I      +   D L++            +  
Sbjct: 58  QERGFDWSALLNAGQTMSLFGDKRWVELRIPTGKPGRDGADALKQFAAQMESQANSSDGP 117

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSIS--- 166
           + ++ I    +                 +AI     ++ HL   I   L   ++ +    
Sbjct: 118 DTVVCIVLPRLDGKTKTSAWFSALDDAGMAIQIDSLDRGHLPHWISGRLKKQEQEVEGGP 177

Query: 167 --KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
             + A + +   + G+ IA+  E+ KL         +TE+ V+  I       + E+  A
Sbjct: 178 EGQRALEFIADQVEGNLIAAHQEILKLGL-LYPSGTLTEEQVRSSILKVARYNVFELTEA 236

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
            + G +     + D       P   +L    ++ +LL K+ +  +    S +++++    
Sbjct: 237 MLAGDLPRLNRMLDGLKGEGEPLVLILWSVTEELRLLSKLKMASDA-GESMQQLMRANR- 294

Query: 285 NIIPMKRNILQESLRIWNKNLVRETLH 311
            I   K  +   +L+      +R  + 
Sbjct: 295 -IWGNKERLYPSALKRIQPLKLRRAMQ 320


>gi|205351933|ref|YP_002225734.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271714|emb|CAR36546.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626973|gb|EGE33316.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 93/260 (35%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++  +L   +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGNALLRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|117619441|ref|YP_857741.1| DNA polymerase III, delta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560848|gb|ABK37796.1| DNA polymerase III, delta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 109/303 (35%), Gaps = 18/303 (5%)

Query: 22  FVFIFYGSDKGLIFELI---NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
             ++ +G +  L  E I    Q  +         F +      E   + +  ++   + S
Sbjct: 18  PCYLIFGDEPLLKLEAIDAVRQVARKQGFDERHSFVV------EQGLDWNQVYDACQAMS 71

Query: 79  LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           LFS ++II +E  +  +K++   + EI  +   + ++++  N + +        +K   S
Sbjct: 72  LFSARQIIELELPAKVDKELAARISEIGKQLHPDLLLVLSGNRLNQTQMKAAWFDKLSQS 131

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +             +             +A   +  +  G+ +A+  E++KL+    
Sbjct: 132 GTYVPVNHPEPRFFPRWMSARFQRFGLKALPDAVNFMCHSYEGNLLAASQEIEKLTLLSP 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               I+  ++++ I         ++I+  ++GK+  A  +     A       L     +
Sbjct: 192 PQP-ISVAYLQETIIRHAHFTPFQLIDTLLEGKVNRAQRILLALRAEGTEPGMLAWALCR 250

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN---KNLVRETLHKI 313
           + + L ++ +         E    +    I   ++ ++Q++L          + + + ++
Sbjct: 251 ELEQLTELALAARAGQPLVEH-FSRLR--IWQSRQQLIQQALTRLPFAKLQQLWQLMARL 307

Query: 314 DHR 316
           D  
Sbjct: 308 DDA 310


>gi|94263019|ref|ZP_01286838.1| DNA polymerase III, delta [delta proteobacterium MLMS-1]
 gi|93456562|gb|EAT06670.1| DNA polymerase III, delta [delta proteobacterium MLMS-1]
          Length = 467

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 18/254 (7%)

Query: 91  LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL--------AISC 142
                     L  +      N+ +++ +    K   L K  E+   VL        +   
Sbjct: 180 AGGGDAAETYLAALEGGLPANNHLLLLTETADKRKKLYKYLEQHGVVLDLSVAAGSSAPA 239

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
             + K  L DL   +L    K ++ +A   LL  +G   +A   E +KL+ Y  +   + 
Sbjct: 240 RKEQKALLADLAHRTLAEFDKKLAADALDPLLERIGFYPVAVVMECEKLALYVGDRPRVE 299

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V  ++  T    I E+  A   G     + L     A  M   A+L G     + L 
Sbjct: 300 RRDVDTMVGRTREEAIYELSEAYSAGDWQRGLALLKRLRAGGMHPLAMLAGLRNHIRKLL 359

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNK--NLVRETLHKI------ 313
               +        E    + +K+ +P  +   Q +  R W          L+++      
Sbjct: 360 LARAVISGGGFQPEMPFPRFQKSFLPKLKEQRQAAGGRGWPGSFPTHPYALYQLFRQAAA 419

Query: 314 -DHRIHLARKKKYL 326
            D     AR    L
Sbjct: 420 HDTTSLQARLADLL 433


>gi|311280456|ref|YP_003942687.1| DNA polymerase III, delta subunit [Enterobacter cloacae SCF1]
 gi|308749651|gb|ADO49403.1| DNA polymerase III, delta subunit [Enterobacter cloacae SCF1]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 98/264 (37%), Gaps = 8/264 (3%)

Query: 62  EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           +   + +  ++     SLF+ ++  ++L+        + + L  +I     + ++I++ N
Sbjct: 56  DTSTDWNALFSLSQERSLFASRQTLMLLLPENGPNAAINEQLNALIGLLHDDLLLIVRGN 115

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ K               + ++C    +  L   +          + + A Q+L     
Sbjct: 116 KLTKAQENAAWFTALAQRSVQVACQTPEQAQLPRWLAARAKQQNLHLDEAASQLLCYCYE 175

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +  
Sbjct: 176 GNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRALHILQ 234

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                      LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L
Sbjct: 235 QLRLEGGEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPLVSDAL 290

Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322
              + + +R+ +  +       ++
Sbjct: 291 NRLSADQLRQCVSLLARTELTLKQ 314


>gi|320178430|gb|EFW53398.1| DNA polymerase III delta subunit [Shigella boydii ATCC 9905]
 gi|323170768|gb|EFZ56418.1| DNA polymerase III, delta subunit [Escherichia coli LT-68]
 gi|323185005|gb|EFZ70372.1| DNA polymerase III, delta subunit [Escherichia coli 1357]
 gi|332096771|gb|EGJ01761.1| DNA polymerase III, delta subunit [Shigella dysenteriae 155-74]
          Length = 340

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 286 ALNRLSQPQLRQAVQLLTRTELTLKQ 311


>gi|148543878|ref|YP_001271248.1| DNA polymerase III, delta subunit [Lactobacillus reuteri DSM 20016]
 gi|184153278|ref|YP_001841619.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227364784|ref|ZP_03848833.1| DNA polymerase III, delta subunit [Lactobacillus reuteri MM2-3]
 gi|325682589|ref|ZP_08162106.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530912|gb|ABQ82911.1| DNA polymerase III, delta subunit [Lactobacillus reuteri DSM 20016]
 gi|183224622|dbj|BAG25139.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227070243|gb|EEI08617.1| DNA polymerase III, delta subunit [Lactobacillus reuteri MM2-3]
 gi|324978428|gb|EGC15378.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 130/336 (38%), Gaps = 27/336 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           V++  G  + L  + I+ F   I         ++ +   +++    +   ++  +T  F 
Sbjct: 18  VYLILGKQQVLQQQAIDAFTSLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++I     L+ EK+       LD L++ +     + I++  +   ++     + K 
Sbjct: 74  ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFTAPYEKLDGRKGIVKQ 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + + +   P ++      +   L      IS+ A   L+     D       L K
Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  I +  V  ++  +    + +++ A ++     A+ L    LA + P   +
Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309
               + +F+LL +I  +     ++   +  +   N+ P +  +  ++ R ++   +    
Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308

Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             L +I+  +   ++   L   +    +L  +Q + 
Sbjct: 309 LGLIRIEQSLKTTQRDPSL---LFQLFMLQYSQQSK 341


>gi|188491767|ref|ZP_02999037.1| DNA polymerase III, delta subunit [Escherichia coli 53638]
 gi|188486966|gb|EDU62069.1| DNA polymerase III, delta subunit [Escherichia coli 53638]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAISLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|309378788|emb|CBX22614.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 332

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 94/294 (31%), Gaps = 11/294 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +A     + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKEQGYLNREVYTADASF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++    ++G +     L D           LL    +  
Sbjct: 193 HTLNIDEAQTAVANVARFDAFQLAGTWMKGDVPRVCRLLDGLREEGGEPVLLLWAVAEDI 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ-ESLRIWNKNLVRETLH 311
           + L ++         S + +        +   +  L   +++  +   + + L 
Sbjct: 253 RTLIRLAAAL-KQGQSVQAVRNSLR---LWGDKQTLAPAAVKRISVPRLLDALK 302


>gi|315127067|ref|YP_004069070.1| DNA polymerase III subunit delta [Pseudoalteromonas sp. SM9913]
 gi|315015581|gb|ADT68919.1| DNA polymerase III subunit delta [Pseudoalteromonas sp. SM9913]
          Length = 346

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 15/237 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVV-LNALEIQKNISTFWNEINST 77
             ++ +G +     + +   +        D    F+L    +  EI         +  S 
Sbjct: 18  PFYLVFGEEPFQEAQCVQLIRDTAKAQGFDEVIKFTLAQGFDWQEIIA-------QYQSM 70

Query: 78  SLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134
           SLFS + II +            +  ++I+     + I+I+K  +  ++       +   
Sbjct: 71  SLFSARTIIELDLNQQKPGTPGANTFKKIVELENPDTILIVKGAKASQDVQRGAWFKALD 130

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              L + CYP +  HL   ++E       +I  EAK  L+    G+ +A   EL+KL+  
Sbjct: 131 KHGLFVPCYPLSGNHLKRWLDEQCQRLSLNIQNEAKLSLINATEGNLLACYQELEKLAL- 189

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
              D LIT+Q V   + +     I ++ +A + G    AI + +   +      ++L
Sbjct: 190 IHGDALITQQLVMQGLLNQAKFDIFDLNDALLNGHTAQAIKVLNKLASDNTEVVSIL 246


>gi|167920493|ref|ZP_02507584.1| DNA polymerase III subunit delta [Burkholderia pseudomallei BCC215]
          Length = 345

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|121634505|ref|YP_974750.1| DNA polymerase III subunit delta [Neisseria meningitidis FAM18]
 gi|120866211|emb|CAM09951.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis
           FAM18]
 gi|254669718|emb|CBA03866.1| DNA polymerase III, delta subunit [Neisseria meningitidis alpha153]
 gi|261392920|emb|CAX50505.1| DNA polymerase III delta subunit [Neisseria meningitidis 8013]
 gi|325131839|gb|EGC54539.1| DNA polymerase III, delta subunit [Neisseria meningitidis M6190]
 gi|325137889|gb|EGC60464.1| DNA polymerase III, delta subunit [Neisseria meningitidis ES14902]
          Length = 332

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|261414658|ref|YP_003248341.1| DNA polymerase III, delta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371114|gb|ACX73859.1| DNA polymerase III, delta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326686|gb|ADL25887.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 322

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 102/294 (34%), Gaps = 10/294 (3%)

Query: 28  GSDKGLIFELINQF-KKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTSLFSKKK 84
           G D+    + I +F  + +     DP +  VL A +  I           +S S+FS ++
Sbjct: 7   GKDQFSKDKRIEKFLSETLGDRISDPMAKQVLYATDTNIASISDVIIEACDSVSMFSPEQ 66

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA--ISC 142
           +I++      K          + +  +  ++     +  ++ L K   K   V    +  
Sbjct: 67  VIVVRKAEALKTDDMKALAKWLPHAASGKLLFDFETLLASSELYKALAKVGKVEKFDVPK 126

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
             +    +  ++        K+I   A Q L   LG D      E++K+  Y  +   IT
Sbjct: 127 QYEMAEWISAVVPTHF---NKAIEPTASQYLAEALGNDTKLVSEEVEKIILYAPDCKKIT 183

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
              VK ++     +   EI            +   +  L S + +  + +        L 
Sbjct: 184 LDLVKTMVVSQRDIPTYEIEGFFGMQNAKAYVQKLNELLNSGVDAIRISNTLYNYALSLL 243

Query: 263 KIHIIKECSNISFEKIIQKTEKNII-PMKRNILQESLRIWNKNLVRETLHKIDH 315
             +       +S E+  +K  KN    +K+    E  R W K L+   L ++  
Sbjct: 244 N-YGSLTAKGVSPEEAAKKIGKNYYMFVKKGQAAECCRRWRKPLLVRVLRRLAD 296


>gi|320193047|gb|EFW67687.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|326341391|gb|EGD65183.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str.
           1044]
          Length = 340

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 286 ALNRLSQPQLRQAVQLLTRTELTLKQ 311


>gi|300937887|ref|ZP_07152678.1| DNA polymerase III, delta subunit [Escherichia coli MS 21-1]
 gi|300457087|gb|EFK20580.1| DNA polymerase III, delta subunit [Escherichia coli MS 21-1]
          Length = 332

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 43  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 101

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + + L K  E      A++       C    +  L   +          +   A 
Sbjct: 102 -----RGSKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPHWVAARAKQLNLELDDAAN 156

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 157 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 215

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 216 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 271

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 272 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 303


>gi|293408766|ref|ZP_06652605.1| DNA polymerase III [Escherichia coli B354]
 gi|331672179|ref|ZP_08372971.1| DNA polymerase III, delta subunit [Escherichia coli TA280]
 gi|291471944|gb|EFF14427.1| DNA polymerase III [Escherichia coli B354]
 gi|331070646|gb|EGI42009.1| DNA polymerase III, delta subunit [Escherichia coli TA280]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|329296088|ref|ZP_08253424.1| DNA polymerase III subunit delta [Plautia stali symbiont]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 113/305 (37%), Gaps = 11/305 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H  +   G++  LI E  +  +   +    D    V ++A   Q +    +    S SLF
Sbjct: 18  HACYFLTGNEPLLIQESADAIRAAAAQQGFDEHFSVSVDA---QTDWEAIFASYQSLSLF 74

Query: 81  SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           ++++ +   +        + + L ++      + +++++  ++ K        +    S 
Sbjct: 75  TQRQTLTLQLPENGPNAAIAEQLVKLAALLHSDIMLVLRMAKLIKAQENSAWFKALSASA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + + C    +  L   +       Q SI   A Q+L     G+ +A    L++LS     
Sbjct: 135 VLVPCQTPEQAQLPRWVAARAKALQLSIDDAAIQLLCYCYEGNLLALAQALERLSL-LWP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V++ + D         ++A + GK   A+ +             LL    + 
Sbjct: 194 DGKLTLPRVEEAVNDAAHFTPFHWVDALLAGKSKRALHILRQLQKEDSEVVILLRTLQRD 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              L +  + ++ +      ++ +    I   +R +  E+L+  +   +++ +H +    
Sbjct: 254 LLTLLQ--LQRQQAKQPLRTLMDQQR--IWQNRRALFTEALQRLDPQRLQQAVHLLAQLE 309

Query: 318 HLARK 322
              ++
Sbjct: 310 LTMKQ 314


>gi|293413936|ref|ZP_06656585.1| DNA polymerase III [Escherichia coli B185]
 gi|291433994|gb|EFF06967.1| DNA polymerase III [Escherichia coli B185]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|218688463|ref|YP_002396675.1| DNA polymerase III subunit delta [Escherichia coli ED1a]
 gi|218426027|emb|CAR06844.1| DNA polymerase III, delta subunit [Escherichia coli ED1a]
 gi|222032400|emb|CAP75139.1| DNA polymerase III subunit delta [Escherichia coli LF82]
 gi|281177790|dbj|BAI54120.1| DNA polymerase III delta subunit [Escherichia coli SE15]
 gi|312945187|gb|ADR26014.1| DNA polymerase III subunit delta [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 343

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|241760059|ref|ZP_04758157.1| DNA polymerase III, delta subunit [Neisseria flavescens SK114]
 gi|241319513|gb|EER55943.1| DNA polymerase III, delta subunit [Neisseria flavescens SK114]
          Length = 333

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 90/265 (33%), Gaps = 29/265 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +      E   + +       S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---- 135
             K+  I I N    K   D L+    +   + + +I   +++K     K          
Sbjct: 74  DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133

Query: 136 --SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                A++ Y      L   I+  L      I  EA  +    + G+ +A+R E++KL+ 
Sbjct: 134 VLEAKAVAPYA-----LPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLAL 188

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------F 240
              +  LI     +  +       + ++  A ++G       L D               
Sbjct: 189 LHPQGHLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWA 248

Query: 241 LASKMPSHALLHGFLQKFQLLEKIH 265
           +A  + +   L   L++ Q ++ + 
Sbjct: 249 VAEDIRTLIRLTAALKQGQNIQSLR 273


>gi|270263708|ref|ZP_06191977.1| hypothetical protein SOD_e03330 [Serratia odorifera 4Rx13]
 gi|270042592|gb|EFA15687.1| hypothetical protein SOD_e03330 [Serratia odorifera 4Rx13]
          Length = 344

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 113/302 (37%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  ++            + L+A     +    ++   + SLF+ +
Sbjct: 21  YLLSGNEPLLLQESQDLIRQAAQQQQFTEHYSISLDAHT---DWDAIFSICQAMSLFASR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +  +++  +      + + L ++      + +++++   + K        +    +   +
Sbjct: 78  QTLLLIFPDNGPTAPLGEQLIKLAALLHDDILLMLRGPRLTKAQENSAWFKALSPNGAYV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC    +  L   + +     +  +   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 SCQTPEQAQLPRWVAQRAKTMKLELDDAANQLLCYCYEGNLLALSQALERLSL-LHPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A  +        +    LL    ++   
Sbjct: 197 LTLPRVELAVNDAAHFTPFHWLDALLAGKSKRAWHILQQMQQEDVEPVILLRTLQRELLQ 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +      +++    +  + +  +   +RN++ ++L+  +   +++ +H +       
Sbjct: 257 LLNLQRRM--ASVPLRTLFDQYK--VWQNRRNLVTQALQRLSGAQLQQAVHLLTQIEITL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|300920546|ref|ZP_07136971.1| DNA polymerase III, delta subunit [Escherichia coli MS 115-1]
 gi|300412448|gb|EFJ95758.1| DNA polymerase III, delta subunit [Escherichia coli MS 115-1]
          Length = 333

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 44  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 103

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 104 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 163

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 164 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 222

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 223 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 278

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 279 ALNRLSQPQLRQAVQLLTRTELTLKQ 304


>gi|253687579|ref|YP_003016769.1| DNA polymerase III, delta subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754157|gb|ACT12233.1| DNA polymerase III, delta subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 341

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 93/251 (37%), Gaps = 7/251 (2%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ +GSD  L+ E ++  K+             +L+      +    ++   + SLF
Sbjct: 18  RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFILDPHT---DWDAIFSTCQALSLF 74

Query: 81  SKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++  ++++        + + L ++      + ++I++ +++ K        +      
Sbjct: 75  ASRQSLLLILPENGPNAAMSENLVKLSGLLHPDILLILRGHKLTKAQENSAWFKALAQDS 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + I+C    +  L   + +     + ++ ++A Q++     G+ +A    L++LS     
Sbjct: 135 VYINCLTPEQAQLPRWVSQRAKSMKLTLDEQATQLICYCYEGNLLALSQALERLSL-LYP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A + GK   A  +             LL    ++
Sbjct: 194 DGKLTLPRVESAVNDAAHFTPFHWLDALLAGKSKRAWHILQQLQQEDCEPVILLRTLQRE 253

Query: 258 FQLLEKIHIIK 268
              L  +    
Sbjct: 254 LLQLLALKRRM 264


>gi|261822389|ref|YP_003260495.1| DNA polymerase III subunit delta [Pectobacterium wasabiae WPP163]
 gi|261606402|gb|ACX88888.1| DNA polymerase III, delta subunit [Pectobacterium wasabiae WPP163]
          Length = 341

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 98/252 (38%), Gaps = 9/252 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
              ++ +GSD  L+ E ++  K+      + + FS +    L++       ++   + SL
Sbjct: 18  RGCYLVFGSDPLLLQESLDSIKRVAQQHEFSEHFSFI----LDLHTEWDAIFSTCQALSL 73

Query: 80  FSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           F+ ++  ++++        + + L ++      + ++I++ +++ K        +     
Sbjct: 74  FASRQSLLLILPENGPNAAMSENLIKLSGLLHPDILLILRGHKLTKAQENSAWFKALSQD 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C    +  L   + +     + ++ ++A Q++     G+ +A    L++L+    
Sbjct: 134 SVYINCLTPEQAQLPRWVAQRAKAMKLTLDEQATQLICYCYEGNLLALSQALERLAL-LY 192

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   V++ + D         ++A + GK   A  +             LL    +
Sbjct: 193 PDGKLTLPRVENAVNDAAHFTPFHWLDALLAGKTKRAWHILQQLKQEDCEPVILLRTLQR 252

Query: 257 KFQLLEKIHIIK 268
           +   L  +    
Sbjct: 253 ELLQLLALKRRM 264


>gi|332524702|ref|ZP_08400901.1| DNA polymerase III subunit delta [Rubrivivax benzoatilyticus JA2]
 gi|332108010|gb|EGJ09234.1| DNA polymerase III subunit delta [Rubrivivax benzoatilyticus JA2]
          Length = 366

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 101/300 (33%), Gaps = 17/300 (5%)

Query: 66  NISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + S       + SLF+ +++I I   N    K   + L+    +   + + ++   ++  
Sbjct: 59  DWSGLLGAAQALSLFADRQLIEIRIPNGKPGKDGSEALQRYCQQLSPDVLTLVTLPKLDF 118

Query: 124 NNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANL 177
                          + +   P  +  L   + + L    + ++     ++        +
Sbjct: 119 QQQKSAWFAALDGAGVTLKVEPVERKALPAWLAQRLGRQGQRVASGEAGQQTLAFFADRV 178

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  ELQKL+        ++ + V+  + D     + ++  A + G++  A+ + 
Sbjct: 179 EGNLLAAHQELQKLAL-LYPPGELSFEQVEAAVLDVARYDVFKLGEAVLAGQVARALRML 237

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE- 296
           D   A       +     +  + L ++    +         +++    +   K  + +  
Sbjct: 238 DGLRAEGEAPVLVHWTLAEDLRGLARVRAAVD-DGKPLPLALREAR--VWGTKEKLYERV 294

Query: 297 --SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN--IIFQTILYIAQTACKNNNFYKRT 352
             +L       + +    +D  +   R   +  +    + + +L   + A       + T
Sbjct: 295 VPALAGHQTQHLVQAASIVDGIVKGLRHPDWPAEPWDALRRLVLMTVEAAAAAGTPTRGT 354


>gi|284009234|emb|CBA76330.1| DNA polymerase III subunit delta [Arsenophonus nasoniae]
          Length = 312

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 101/264 (38%), Gaps = 8/264 (3%)

Query: 62  EIQKNISTFWNEINSTSLFSKKKIILI--ENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           +   +  T +    S SLF+ ++I+++          + + L ++      + +++++  
Sbjct: 22  DTSTDWDTIYRLSQSLSLFASRQILILILPESGPTAVIAEKLLKLAEILHSDLLLLLRGG 81

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ K        +K     + I+C    +  L   + +       ++ K+A Q+L  +  
Sbjct: 82  KLTKAQENSAWCKKIAQDGVYINCLTPEQSRLTQWVTQRAKAMSVTLDKQANQLLCYSYE 141

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A    L++LS     D  +T   VK+ + +         ++A + GKI  +  +  
Sbjct: 142 GNLLALNQALERLSL-LYPDGNLTLPRVKEAVNNAVHFTPYHWVDALLAGKIKRSWHILQ 200

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                   +  LL    ++  LL  +       ++   K+  +    I   +R ++  +L
Sbjct: 201 QLQREDYEAVILLRIIQRELILLLTLKQQSNAKDLR--KLFDQHR--IWQARRPLINAAL 256

Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322
           +      ++  +  I       ++
Sbjct: 257 QRLPLRELQHAIQLITQAELHLKQ 280


>gi|191168693|ref|ZP_03030473.1| DNA polymerase III, delta subunit [Escherichia coli B7A]
 gi|194434455|ref|ZP_03066716.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1012]
 gi|218553182|ref|YP_002386095.1| DNA polymerase III subunit delta [Escherichia coli IAI1]
 gi|291281591|ref|YP_003498409.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293418751|ref|ZP_06661186.1| DNA polymerase III [Escherichia coli B088]
 gi|300817841|ref|ZP_07098055.1| DNA polymerase III, delta subunit [Escherichia coli MS 107-1]
 gi|300823044|ref|ZP_07103178.1| DNA polymerase III, delta subunit [Escherichia coli MS 119-7]
 gi|301302121|ref|ZP_07208254.1| DNA polymerase III, delta subunit [Escherichia coli MS 124-1]
 gi|306812928|ref|ZP_07447121.1| DNA polymerase III subunit delta [Escherichia coli NC101]
 gi|307312644|ref|ZP_07592276.1| DNA polymerase III, delta subunit [Escherichia coli W]
 gi|309795493|ref|ZP_07689910.1| DNA polymerase III, delta subunit [Escherichia coli MS 145-7]
 gi|331645798|ref|ZP_08346901.1| DNA polymerase III, delta subunit [Escherichia coli M605]
 gi|331651652|ref|ZP_08352671.1| DNA polymerase III, delta subunit [Escherichia coli M718]
 gi|331666993|ref|ZP_08367867.1| DNA polymerase III, delta subunit [Escherichia coli TA271]
 gi|331676299|ref|ZP_08377011.1| DNA polymerase III, delta subunit [Escherichia coli H591]
 gi|190901285|gb|EDV61054.1| DNA polymerase III, delta subunit [Escherichia coli B7A]
 gi|194417306|gb|EDX33414.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1012]
 gi|209777074|gb|ACI86849.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|218359950|emb|CAQ97494.1| DNA polymerase III, delta subunit [Escherichia coli IAI1]
 gi|290761464|gb|ADD55425.1| DNA polymerase III, delta subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291325279|gb|EFE64694.1| DNA polymerase III [Escherichia coli B088]
 gi|300524393|gb|EFK45462.1| DNA polymerase III, delta subunit [Escherichia coli MS 119-7]
 gi|300529538|gb|EFK50600.1| DNA polymerase III, delta subunit [Escherichia coli MS 107-1]
 gi|300842673|gb|EFK70433.1| DNA polymerase III, delta subunit [Escherichia coli MS 124-1]
 gi|305853691|gb|EFM54130.1| DNA polymerase III subunit delta [Escherichia coli NC101]
 gi|306907346|gb|EFN37851.1| DNA polymerase III, delta subunit [Escherichia coli W]
 gi|308120868|gb|EFO58130.1| DNA polymerase III, delta subunit [Escherichia coli MS 145-7]
 gi|315059895|gb|ADT74222.1| DNA polymerase III, delta subunit [Escherichia coli W]
 gi|315255055|gb|EFU35023.1| DNA polymerase III, delta subunit [Escherichia coli MS 85-1]
 gi|320198234|gb|EFW72838.1| DNA polymerase III delta subunit [Escherichia coli EC4100B]
 gi|320654416|gb|EFX22463.1| DNA polymerase III subunit delta [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660097|gb|EFX27627.1| DNA polymerase III subunit delta [Escherichia coli O55:H7 str. USDA
           5905]
 gi|323379541|gb|ADX51809.1| DNA polymerase III, delta subunit [Escherichia coli KO11]
 gi|323945115|gb|EGB41177.1| DNA polymerase III [Escherichia coli H120]
 gi|324116714|gb|EGC10629.1| DNA polymerase III [Escherichia coli E1167]
 gi|331044550|gb|EGI16677.1| DNA polymerase III, delta subunit [Escherichia coli M605]
 gi|331049930|gb|EGI21988.1| DNA polymerase III, delta subunit [Escherichia coli M718]
 gi|331066217|gb|EGI38101.1| DNA polymerase III, delta subunit [Escherichia coli TA271]
 gi|331076357|gb|EGI47639.1| DNA polymerase III, delta subunit [Escherichia coli H591]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|317122998|ref|YP_004103001.1| DNA polymerase III subunit delta [Thermaerobacter marianensis DSM
           12885]
 gi|315592978|gb|ADU52274.1| DNA polymerase III, delta subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 434

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 8/220 (3%)

Query: 99  DCLEEIIIKNICNHIIIIK-SNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156
             L   +       +++I    ++  +   +R++        A++C P     L   +++
Sbjct: 168 AALLAYLDDPAPTAVLVISHPGDVDGRRAVVRRL---RQRGWAVACEPLRDDALARWLQQ 224

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
                 K +  EA   LL +   D     +E+ K+++Y  +   I    ++ +       
Sbjct: 225 QAAAWGKELEPEALAWLLESGEPDLQRLASEIAKVATYVGDRRRIAAADLRAVGVALATA 284

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
            + E+++A   G+   A+ L    L +  P   LL    +++++L     ++        
Sbjct: 285 GVFELVDAVAAGRRRQAMDLLGRLLDANEPPLRLLALIARQYRILAYACSLRAEGG-DAA 343

Query: 277 KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++ Q    +    ++    +  R    +     L  +   
Sbjct: 344 RLQQLLGLHPFVARKAW--QQARDVPLDRAMAALEAVLET 381


>gi|268318170|ref|YP_003291889.1| DNA polymerase III, delta subunit [Rhodothermus marinus DSM 4252]
 gi|262335704|gb|ACY49501.1| DNA polymerase III, delta subunit [Rhodothermus marinus DSM 4252]
          Length = 350

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 110/330 (33%), Gaps = 17/330 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  YG +  LI  L     ++        F+L ++   E +           S  + +
Sbjct: 24  PLYFLYGEESFLIDTLQQLLIEHALPPELRAFNLDIVYGDETEARA--VLGLCQSLPVMA 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKFTSVL 138
             +++++ N  + ++          +     I+++       +      R + +      
Sbjct: 82  PHRVVIVRNFDSLRE-NRLFAAYAERPNPQAIVLLACSGRPNLNAQ-PYRALRQHAVWAE 139

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     +   +          +  EA Q L   +G D  A   EL+KL +Y    
Sbjct: 140 LRPLRP---AQVPGWLARYAEREGYRLEPEALQRLAEYVGTDLQAGVQELRKLFAYAGTR 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS----HALLHGF 254
             +T   +  +   T    I E+  A  +G+  +A+ + +  L            ++   
Sbjct: 197 HTLTLDDIVTVSGQTRSYNIFELQRAVGEGRYSDAVYIVEQLLQHASNPRSEALRIVSFL 256

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              F  L ++  + +   +S + +  +       ++  +  +S R +  + +R  L  + 
Sbjct: 257 TTFFTKLWRL-TLCQGQRLSNQALAGRIGVPAYFLQEYL--QSARRYGGDAIRRVLAALL 313

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACK 344
                 +     +  ++   +L   Q AC+
Sbjct: 314 AADVELKGGSQRDPRLVLHLLLRQVQAACR 343


>gi|90409056|ref|ZP_01217182.1| DNA polymerase III subunit delta [Psychromonas sp. CNPT3]
 gi|90309837|gb|EAS37996.1| DNA polymerase III subunit delta [Psychromonas sp. CNPT3]
          Length = 331

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 114/289 (39%), Gaps = 13/289 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + +G +     E + Q K +     +       +       +I   +N   S SLFS+K
Sbjct: 20  ILIFGDEILFSLEALQQIKTSAKQQGYLEIFQFDMGVNFASDDI---FNHFVSRSLFSEK 76

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEK-FTSVLA 139
           KIIL+    T K+    + E+      + ++II+  ++      +   K  EK    V  
Sbjct: 77  KIILLTLPKTSKENTAFIREVTPLLNEDILLIIQGPKLNTQQMNSVWFKQLEKIGLFVAT 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           ++    N+      I + L   Q   S E  + L  +  G+ + ++ E +KL+       
Sbjct: 137 LAP---NQQRFPQWIFQRLKSLQLEASNEVIEYLCVHFEGNLLGAKQEFEKLAL-IYPKQ 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T Q V+  I       I + +++ + G    ++ +             L      + Q
Sbjct: 193 KLTLQQVEKNITTHCHFSIFQWVDSLLVGAQGRSLRILKQLQNEDTEILLLSATLSSEIQ 252

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L KI   K  + ++ E+++++ +  +   K+ IL+++L   +   + +
Sbjct: 253 KLLKISYQK--NTVALEQLLEQQQPKLWTAKKQILKKALTRLDTQRLEQ 299


>gi|161869650|ref|YP_001598817.1| DNA polymerase III subunit delta [Neisseria meningitidis 053442]
 gi|161595203|gb|ABX72863.1| DNA polymerase III, delta subunit [Neisseria meningitidis 053442]
          Length = 332

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIDLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSVQSVRNSLR 276


>gi|157160135|ref|YP_001457453.1| DNA polymerase III subunit delta [Escherichia coli HS]
 gi|312970721|ref|ZP_07784902.1| DNA polymerase III, delta subunit [Escherichia coli 1827-70]
 gi|157065815|gb|ABV05070.1| DNA polymerase III, delta subunit [Escherichia coli HS]
 gi|310337370|gb|EFQ02508.1| DNA polymerase III, delta subunit [Escherichia coli 1827-70]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|215485680|ref|YP_002328111.1| DNA polymerase III subunit delta [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965086|ref|ZP_07779323.1| DNA polymerase III, delta subunit [Escherichia coli 2362-75]
 gi|215263752|emb|CAS08088.1| DNA polymerase III, delta subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290177|gb|EFR18060.1| DNA polymerase III, delta subunit [Escherichia coli 2362-75]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|157155534|ref|YP_001461808.1| DNA polymerase III subunit delta [Escherichia coli E24377A]
 gi|194439878|ref|ZP_03071941.1| DNA polymerase III, delta subunit [Escherichia coli 101-1]
 gi|253774374|ref|YP_003037205.1| DNA polymerase III subunit delta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160722|ref|YP_003043830.1| DNA polymerase III subunit delta [Escherichia coli B str. REL606]
 gi|297519943|ref|ZP_06938329.1| DNA polymerase III subunit delta [Escherichia coli OP50]
 gi|157077564|gb|ABV17272.1| DNA polymerase III, delta subunit [Escherichia coli E24377A]
 gi|194421172|gb|EDX37196.1| DNA polymerase III, delta subunit [Escherichia coli 101-1]
 gi|242376415|emb|CAQ31115.1| DNA polymerase III, delta subunit, subunit of DNA polymerase III,
           preinitiation complex and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253325418|gb|ACT30020.1| DNA polymerase III, delta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972623|gb|ACT38294.1| DNA polymerase III subunit delta [Escherichia coli B str. REL606]
 gi|253976817|gb|ACT42487.1| DNA polymerase III subunit delta [Escherichia coli BL21(DE3)]
 gi|323963209|gb|EGB58777.1| DNA polymerase III [Escherichia coli H489]
 gi|332341987|gb|AEE55321.1| DNA polymerase III, delta subunit, HolA [Escherichia coli UMNK88]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNGAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|163857638|ref|YP_001631936.1| DNA polymerase III subunit delta [Bordetella petrii DSM 12804]
 gi|163261366|emb|CAP43668.1| putative DNA polymerase III, delta subunit [Bordetella petrii]
          Length = 350

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 107/314 (34%), Gaps = 19/314 (6%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +++ +      +       ++   G +  L+ E I+  +       +   + +V++A  
Sbjct: 4   ALDADRLADHLQRAGQQLAPLYTVSGDEPLLVTEAIDALRAAARAAGYTDRTSMVMDA-- 61

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIII 116
            + + S       S SLF  ++++ I+        +    +    ++   +   + +I++
Sbjct: 62  -RSDWSAVAAATQSVSLFGDRRVLEIKLPTGKPGKTGGDTLTRLADQASRQPDPDTLILV 120

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLA 175
               + K     K A+       +   P  +   L   I   L    +       Q +  
Sbjct: 121 ALPRLDKATRDAKWAQALAQAGIMVDLPTIERSRLPAWIGARLGRQNQRADNATLQWMAD 180

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
            + G+ +A+  E+QKL      +  +  + V+  + +     +  + +A + G     + 
Sbjct: 181 KVEGNLLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDATRTVR 239

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           +     A       +L    ++ +LL ++      +      ++++    I      +  
Sbjct: 240 MLAGLRAEGEALPLVLWAVGEEIRLLARV-AEARAAGQDTGAVMRRLR--IFGAHERLAL 296

Query: 296 ESL-----RIWNKN 304
           ++L     R W   
Sbjct: 297 QALGRVSARAWPAA 310


>gi|163788222|ref|ZP_02182668.1| hypothetical protein FBALC1_07573 [Flavobacteriales bacterium
           ALC-1]
 gi|159876542|gb|EDP70600.1| hypothetical protein FBALC1_07573 [Flavobacteriales bacterium
           ALC-1]
          Length = 335

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 100/263 (38%), Gaps = 7/263 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  ++N+       F+ +VL   +    I    +      + +
Sbjct: 18  PIYFLMGEEAYYIDKISDFIEENVLHEAEKGFNQMVLYGRDTS--IDDIVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLA 139
           ++++++++      + ++ L +         ++++     +I K   L K   K   V+ 
Sbjct: 76  ERQVVIVKEAQDLSRTIEKLAKYAENPQPTTVLVVNYKYKKIDKRKALYKTISKNGGVV- 134

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                     + D I   L      IS +A Q+L+  LG D     NEL KL     +  
Sbjct: 135 FESKKLYDNQVPDWIRRVLKGQDYDISPKAAQMLVEFLGTDLGKVNNELNKLKIVLPKGT 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT +H+++ I  +      E+  A  +  +  A  +A +F  +    P    +      
Sbjct: 195 QITPEHIEENIGISKDYNNFELRKAVGERNVIKAHKIAKYFADNPKDNPMVVTVSLLFSF 254

Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280
           F  L  +H + + +  S    ++
Sbjct: 255 FSQLLHLHGMHDKNPRSVASALR 277


>gi|15800354|ref|NP_286366.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 EDL933]
 gi|15829932|ref|NP_308705.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str.
           Sakai]
 gi|168758285|ref|ZP_02783292.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764681|ref|ZP_02789688.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767088|ref|ZP_02792095.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777617|ref|ZP_02802624.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779133|ref|ZP_02804140.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786491|ref|ZP_02811498.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168802448|ref|ZP_02827455.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195939380|ref|ZP_03084762.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805866|ref|ZP_03248203.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814912|ref|ZP_03256091.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823081|ref|ZP_03263399.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397273|ref|YP_002269276.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326444|ref|ZP_03442528.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791806|ref|YP_003076643.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224107|ref|ZP_05938388.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257801|ref|ZP_05950334.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12513544|gb|AAG54974.1|AE005243_3 DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360136|dbj|BAB34101.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767196|gb|EDU31040.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|189002798|gb|EDU71784.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354840|gb|EDU73259.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363511|gb|EDU81930.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365366|gb|EDU83782.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373766|gb|EDU92182.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189375578|gb|EDU93994.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208725667|gb|EDZ75268.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731560|gb|EDZ80248.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737274|gb|EDZ84958.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158673|gb|ACI36106.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209777068|gb|ACI86846.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|209777070|gb|ACI86847.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|209777072|gb|ACI86848.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|209777076|gb|ACI86850.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|217322665|gb|EEC31089.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591206|gb|ACT70567.1| DNA polymerase III, delta subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|320638089|gb|EFX07853.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str.
           G5101]
 gi|320643495|gb|EFX12665.1| DNA polymerase III subunit delta [Escherichia coli O157:H- str.
           493-89]
 gi|320648830|gb|EFX17457.1| DNA polymerase III subunit delta [Escherichia coli O157:H- str. H
           2687]
 gi|320664894|gb|EFX32029.1| DNA polymerase III subunit delta [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345829|gb|EGD69568.1| DNA polymerase III delta subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|167825820|ref|ZP_02457291.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 9]
          Length = 352

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|77745305|gb|ABB02553.1| DNA polymerase III delta subunit [Lactobacillus reuteri]
          Length = 381

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 130/334 (38%), Gaps = 24/334 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           V++  G  + L  + I+ F   I         ++ +   +++    +   ++  +T  F 
Sbjct: 18  VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++I     L+ EK        LD L++ +     + I++  +   ++     + K 
Sbjct: 74  ERRLVIINKPFFLTGEKTHSKVEHDLDSLKKYLEPPEPSTILVFAAPYEKLDGRKGIVKQ 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + + +   P ++      +   L      IS+ A   L+     D       L K
Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  I +  V  ++  +    + +++ A ++     A+ L    LA + P   +
Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309
               + +F+LL +I  +     ++   +  +   N+ P +  +  ++ R ++   +    
Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308

Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341
             L +I+  +   ++   L  + +  +IL  A+ 
Sbjct: 309 LGLIRIEQSLKTTQRDPSLCFSYLCYSILSRAKE 342


>gi|323976377|gb|EGB71467.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAVFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|218703974|ref|YP_002411493.1| DNA polymerase III subunit delta [Escherichia coli UMN026]
 gi|293403902|ref|ZP_06647896.1| DNA polymerase III delta subunit [Escherichia coli FVEC1412]
 gi|298379678|ref|ZP_06989283.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302]
 gi|331662005|ref|ZP_08362928.1| DNA polymerase III, delta subunit [Escherichia coli TA143]
 gi|218431071|emb|CAR11947.1| DNA polymerase III, delta subunit [Escherichia coli UMN026]
 gi|291428488|gb|EFF01513.1| DNA polymerase III delta subunit [Escherichia coli FVEC1412]
 gi|298279376|gb|EFI20884.1| DNA polymerase III subunit delta [Escherichia coli FVEC1302]
 gi|331060427|gb|EGI32391.1| DNA polymerase III, delta subunit [Escherichia coli TA143]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|171319958|ref|ZP_02909033.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MEX-5]
 gi|171094788|gb|EDT39827.1| DNA polymerase III, delta subunit [Burkholderia ambifaria MEX-5]
          Length = 364

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 112/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLSMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307


>gi|153806312|ref|ZP_01958980.1| hypothetical protein BACCAC_00571 [Bacteroides caccae ATCC 43185]
 gi|149130989|gb|EDM22195.1| hypothetical protein BACCAC_00571 [Bacteroides caccae ATCC 43185]
          Length = 339

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLNDTEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           ++ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIATMLGLRTP--WQAKDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  K   +   +I+ + +  I
Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337


>gi|145296314|ref|YP_001139135.1| hypothetical protein cgR_2229 [Corynebacterium glutamicum R]
 gi|140846234|dbj|BAF55233.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 331

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76
           V +  G D+ L  E       NI           D   +  L A EI +      + + S
Sbjct: 18  VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 70

Query: 77  TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            SLF++ +++++ N+  + +  V   L   +  +   ++I++ S   +  + ++K+ EK 
Sbjct: 71  PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 129

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             V   +   D        +++     +  ++ +    LL  +G D     + + +L   
Sbjct: 130 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 187

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + V+        +   +I ++   G++  A+      L       AL    
Sbjct: 188 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQVSKAVASTRRALQLGTSPVALAAAL 245

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311
             K   + +++  +    I+  ++ ++       +++    +  R W+ + V E    + 
Sbjct: 246 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 301

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            +D  +             I   +  +A+ A +
Sbjct: 302 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 331


>gi|254425063|ref|ZP_05038781.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7335]
 gi|196192552|gb|EDX87516.1| DNA polymerase III, delta subunit [Synechococcus sp. PCC 7335]
          Length = 331

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 20/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F+G D+  + + +   +          F+   ++       I    N+  +     
Sbjct: 2   PIYFFWGEDEFRLKQAVENLRDRTLAPAWATFNYDRISPDAADAAIQGL-NQAMTPPFGE 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
            ++ + + +        +  L  +   +     + ++++ S       +K    LRK A+
Sbjct: 61  GQRFVWLVDTPVAQRCSESTLAEMVRTLPLVPESTVLLLTSSSKPDGRLKSTKLLRKHAD 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
               +       D    L+  +          +  E+  +L   +G D     NEL+KLS
Sbjct: 121 MREFLPIAPWQTDQ---LISQVRRVAQEMHLRLKPESAALLAEAVGADTRRLYNELEKLS 177

Query: 193 SYCLEDILITEQ----HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            Y      +        V   +         ++  + I G+   A+ LA   LA+  P+ 
Sbjct: 178 VYWSSLGQVKTDPLPPEVITRLVAVSTQTSFQLAESLIAGQTDQALGLATDLLANNEPAL 237

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++   + +F+    + ++ +   I   K I +  +   P +  ILQ+ +R    +   +
Sbjct: 238 KVVATLVGQFRRWLWVSLLAQQGEIDV-KAIARAAEINNPRRVYILQKQVRGCAPSQFEK 296

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQT 334
            L  +       ++     + I  QT
Sbjct: 297 ALSLLLGLEFSLKRGAP--EQITLQT 320


>gi|254246335|ref|ZP_04939656.1| DNA polymerase III, delta [Burkholderia cenocepacia PC184]
 gi|124871111|gb|EAY62827.1| DNA polymerase III, delta [Burkholderia cenocepacia PC184]
          Length = 364

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSMLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKMDPVDRAQLPNWIGQRLSMQGQRVASGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307


>gi|325290551|ref|YP_004266732.1| DNA polymerase III, delta subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965952|gb|ADY56731.1| DNA polymerase III, delta subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 344

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 109/307 (35%), Gaps = 27/307 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YG D+  + + +   KK          ++ ++   EI  +       +NS++LFS 
Sbjct: 18  VYLLYGEDRYSLLQSVQGMKKLFLREDPSGSNIEIMQGKEIPVD--QIIETLNSSALFS- 74

Query: 83  KKIILIENLSTEKKV-----------------LDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +K+++++N     +                  ++ L + +     + I+ I +N+  K  
Sbjct: 75  RKLVIVDNAPYFDQAKKKNSSEDEEMDQDSWSVEPLIDYLQDPNPSSILCIIANKANKGR 134

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            L +   K   ++  +  P       + I        K+I  +A   L    G       
Sbjct: 135 RLYQAMAKAGRIIEFA-MPSGTGEWQEWIGAEARANGKTIGMQAASYLAEWSGHHTGILG 193

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E++KL+ Y  +   I ++ +  +        + ++++         A+      +  + 
Sbjct: 194 AEIEKLAVYLGDRQEIMKEDIGAVCIPMAETTVFKMLDGIAARNAGEALQRLREVVE-RE 252

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-IQKTEKNIIPMKRNILQESLRIWNKN 304
               +    +++ +LL     ++       E + +   +         + ++S +     
Sbjct: 253 HYLKVNTMIVRQVRLLLTACYLRTGGGKPEELVRVASIKP---FEANKVFRQSAKF-TFP 308

Query: 305 LVRETLH 311
           ++ + L 
Sbjct: 309 MLEKALE 315


>gi|164686309|ref|ZP_02210339.1| hypothetical protein CLOBAR_02747 [Clostridium bartlettii DSM
           16795]
 gi|164601911|gb|EDQ95376.1| hypothetical protein CLOBAR_02747 [Clostridium bartlettii DSM
           16795]
          Length = 348

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 120/289 (41%), Gaps = 23/289 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  LI   I  F+++++ +  D F+L +++  E   +     + I +     
Sbjct: 17  KIYLLYGKEHYLIDNAIKLFRESLNESMID-FNLEIIDGKETTLD--QLLSSIETLPFMD 73

Query: 82  KKKIILIEN-----LSTEKKVLDCLEEIII---KNICNHIIIIKS--NEIKKNNTLRKIA 131
           ++KI+++++      S +K   D  E+      +NI +  I++ +   E+ K  ++    
Sbjct: 74  ERKIVIVKDFELLTKSKKKNFSDKDEKTFASHLENIPDTTILVFAVYGEVDKRKSIVNTI 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIA------S 184
               + +A +C   + + L    ++        I        + + G  D+         
Sbjct: 134 --SKNGIAYNCEKISDMELFKWTKKKFEKNNTMIDNAQIMYFIESTGYKDKNNEYTLSDI 191

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            NE++K+SS+   D  +T + +  +        I ++I+        NAI + +  +   
Sbjct: 192 DNEIRKISSFAGSDTKVTNEIIDRLSQKKIENDIFKLIDYIGDKNSQNAIKILNDMINEG 251

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
                +     ++F+++ ++  +     ++ + I  K + ++  + ++I
Sbjct: 252 ESVLGIFAMINRQFKIVLQVKELL-NKGLNNKAISDKLKLSLFIVNKSI 299


>gi|193069092|ref|ZP_03050050.1| DNA polymerase III, delta subunit [Escherichia coli E110019]
 gi|218694080|ref|YP_002401747.1| DNA polymerase III subunit delta [Escherichia coli 55989]
 gi|192957636|gb|EDV88081.1| DNA polymerase III, delta subunit [Escherichia coli E110019]
 gi|218350812|emb|CAU96504.1| DNA polymerase III, delta subunit [Escherichia coli 55989]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|157369448|ref|YP_001477437.1| DNA polymerase III subunit delta [Serratia proteamaculans 568]
 gi|157321212|gb|ABV40309.1| DNA polymerase III, delta subunit [Serratia proteamaculans 568]
          Length = 344

 Score = 80.0 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 111/302 (36%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  ++            + L+A     +    ++   + SLF+ +
Sbjct: 21  YLLSGNEPLLLQESQDLIRQTAQQHQFTEHYSISLDAHT---DWDAIFSICQAMSLFASR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +  +++         + + L ++      + +++++   + K        +        +
Sbjct: 78  QTLLLIFPENGPTAPIGEQLIKLAALLHDDILLMLRGPRLTKAQENSAWFKALSPHGAYV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC    +  L   + +     +  +   A Q+L     G+ +A    L++LS     D  
Sbjct: 138 SCQTPEQAQLPRWVAQRAKTMKLELDDAANQLLCYCYEGNLLALSQALERLSL-LHPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A  +        +    LL    ++   
Sbjct: 197 LTLPRVELAVNDAAHFTPFHWLDALLAGKSKRAWHILQQMQQEDVEPVILLRTLQRELLQ 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +      +++    +  + +  +   +RN++ ++L+  +   +R+ +H +       
Sbjct: 257 LLNLQRRM--ASVPLRTLFDQYK--VWQNRRNLVTQALQRLSGAQLRQAVHLLTQIEITL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|19553545|ref|NP_601547.1| hypothetical protein NCgl2264 [Corynebacterium glutamicum ATCC
           13032]
 gi|62391189|ref|YP_226591.1| hypothetical protein cg2576 [Corynebacterium glutamicum ATCC 13032]
 gi|41326529|emb|CAF21011.1| putative DNA polymerase III delta subunit [Corynebacterium
           glutamicum ATCC 13032]
          Length = 331

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76
           V +  G D+ L  E       NI           D   +  L A EI +      + + S
Sbjct: 18  VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 70

Query: 77  TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            SLF++ +++++ N+  + +  V   L   +  +   ++I++ S   +  + ++K+ EK 
Sbjct: 71  PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 129

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             V   +   D        +++     +  ++ +    LL  +G D     + + +L   
Sbjct: 130 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 187

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + V+        +   +I ++   G++  A+      L       AL    
Sbjct: 188 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQMSKAVASTRRALQLGTSPVALAAAL 245

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311
             K   + +++  +    I+  ++ ++       +++    +  R W+ + V E    + 
Sbjct: 246 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 301

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            +D  +             I   +  +A+ A +
Sbjct: 302 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 331


>gi|258511974|ref|YP_003185408.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478700|gb|ACV59019.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 336

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 26/335 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YGS+ GL     ++  +N  ++     S++  +  E     +    E+ S SL   
Sbjct: 18  VYLLYGSEIGLFDWFCDELIRNHQVS-----SMLRFDYQEDGFEPAEM--ELCSYSLLGD 70

Query: 83  KKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + ++ + N              D L   + + +    +++     K +   R++ +    
Sbjct: 71  RPLVYVRNATAFTPEGRSGPDADRLAAYLEQPVSGRTLVLSVPSDKLDER-RRVTKLAKR 129

Query: 137 VLAISCYPDNKIHLMDLIE-ESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              I+C P        ++  E L   +   I K+A   L        +A  NE  KL +Y
Sbjct: 130 HAVIAC-PVPSRDRDAMVRLERLARSKAVVIDKDALAELWRRTQSLTLAM-NEFDKLRAY 187

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT  HV +++       +   I+  +QG++ +     D        + +L+   
Sbjct: 188 AGG-GPITRDHVLELVPMQAEDSVFTWIDWAVQGQVASVFEALDGLARQGYDAFSLIALL 246

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++ +L+            + E         + P            + +  +   +  + 
Sbjct: 247 ARQVRLMAFAKGAANLEQRAKEL-------GVHPYALRTAARQSARFPERKLARLVRVLA 299

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349
                 ++ +   +  +   ++ +A  A       
Sbjct: 300 DAEWDVKRGRLAPEVALNLVLMELAHAASTTPRNR 334


>gi|13508189|ref|NP_110138.1| hypothetical protein MPN450 [Mycoplasma pneumoniae M129]
 gi|2496381|sp|Q50362|Y450_MYCPN RecName: Full=Uncharacterized protein MG315 homolog
 gi|639787|gb|AAA61694.1| unknown [Mycoplasma pneumoniae]
 gi|1674072|gb|AAB96039.1| conserved hypothetical protein [Mycoplasma pneumoniae M129]
          Length = 314

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 131/322 (40%), Gaps = 29/322 (9%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S  + + YG+D GLI + +NQ          +P +   +      ++++  ++ + + +L
Sbjct: 13  SFTMTVVYGADIGLIHQQLNQLL--------NPAACKQVWF----QDVNKLYDVVLNQNL 60

Query: 80  FS-KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           F+   K ILI N S  EK  L   E   +K + +  +++    I  ++    +     ++
Sbjct: 61  FAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVT---IYSDSPANALI-NDRAI 116

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
              +C P     +  +I ++    + +++ +    L   L  +      EL+KL+     
Sbjct: 117 TKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLS-P 175

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALLHGFL 255
             L  ++ ++ ++CD     I ++ +A ++ +   A+ L +     K   P   L   FL
Sbjct: 176 AELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQFL--EFL 233

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
               LL  +        +   + + + + N+ P +   +Q   R W+ N +   ++ I  
Sbjct: 234 ANELLLALM-----VKGVKP-QAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTALINAIWQ 287

Query: 316 RIHLARKKKYLEKNIIFQTILY 337
                ++   L  +++   +L 
Sbjct: 288 LDIKIKRNDGLAIHLLKHFVLR 309


>gi|78043172|ref|YP_359266.1| hypothetical protein CHY_0405 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995287|gb|ABB14186.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 327

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 108/301 (35%), Gaps = 20/301 (6%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I   +F    T+ +     +++F G ++    E +    K    + H  F+   L+  E+
Sbjct: 2   IAYERFKNALTRGVL--KPLYLFSGEER-YFKERLFGEIKKYLGSNH-EFNYEELDGHEV 57

Query: 64  QKNISTFWNEINSTSLFSKKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
                       + S F + + I+++N    + K   + L   +        ++I S E+
Sbjct: 58  L--PEEVVARAETVSFFGQ-RFIVVKNCRFFSGKHDEEPLLNYLKNPAPRA-VVIFSTEL 113

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
             +   +   E   +   I     ++  + +LI+        ++ +EA  +L  + G + 
Sbjct: 114 PVDKKKKIYQEFLKNGEEIEFSRLDEKEVQELIKTWADRAGFNLEREALIVLAQSYGQNL 173

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +    E +KL  Y L + +IT + V ++      + +  ++   + GKI     L +   
Sbjct: 174 VELEKEFKKLVLYKLSEKIITLKDVLEVSGQDQEISVFYLVEELLSGKINR-PKLKERLT 232

Query: 242 ASKMPSHALLHGF--LQKF-------QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
             +            L++        Q  + +  I + + I    + +     +   +  
Sbjct: 233 NQEEAVKFTGLVAKNLRQIYTVKVLQQKGKTLQEIAKITGIPEWLVKKTLRSAVHLSQEK 292

Query: 293 I 293
           +
Sbjct: 293 L 293


>gi|167721225|ref|ZP_02404461.1| DNA polymerase III subunit delta [Burkholderia pseudomallei DM98]
          Length = 326

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|293400478|ref|ZP_06644623.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305504|gb|EFE46748.1| DNA polymerase III, delta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 317

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 116/316 (36%), Gaps = 31/316 (9%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG ++  + + +    K       D  + V  +A  +Q ++ T   +  +   FS  
Sbjct: 3   YVLYGEEQFRLKKTLQTIIKEYIAD-GDELNTVQYDA--LQCDLETILEDAMTIPFFSAY 59

Query: 84  KIILIENL-----STEKKVLDCLEEIIIKNICNHIIIIKSNE---IKKNNTLRKIAEKFT 135
           KIIL+ +      + +  +     E  +K      ++I   +   +     + K+ +K  
Sbjct: 60  KIILVYHANFLSTANDTGIDPNGLENYVKQPMESTVLILIGDFAKLDTRKKIIKLIQKNW 119

Query: 136 SVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            VL           L DL     ++E +   Q  +  +A Q LL  L  D     +   K
Sbjct: 120 KVL-------EFRKLDDLGKQSCVKEEIQRRQLHVDAQAMQELLKRLPLDMETIHSAFDK 172

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  +   IT+  V  ++       + E++NA ++  +  A  +          +  L
Sbjct: 173 LQLYGGD---ITQDVVAHLVARPLEEDVFELVNAVVEQDVRKAFRIWCDLCVVNTDAIYL 229

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     +F+ L ++  +      S + I      +  P +  +  +S++  + + +   L
Sbjct: 230 IALLASQFRFLFEVKTLM-MQGESKDGIKDIL--HAHPYRIKLAMQSVQNLSASYLMSML 286

Query: 311 HKIDHRIHLARKKKYL 326
            K+       + K  L
Sbjct: 287 AKL--ATLDQKLKGGL 300


>gi|170767849|ref|ZP_02902302.1| DNA polymerase III, delta subunit [Escherichia albertii TW07627]
 gi|170123337|gb|EDS92268.1| DNA polymerase III, delta subunit [Escherichia albertii TW07627]
          Length = 343

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 97/270 (35%), Gaps = 20/270 (7%)

Query: 62  EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           +   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+   
Sbjct: 56  DPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV--- 112

Query: 120 EIKKNNTLRKIAEKFT-------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172
              + N L K  E            + ++C    +  L   +          +   A Q+
Sbjct: 113 ---RGNKLSKTQENAAWFTALVNRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQV 169

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK   
Sbjct: 170 LCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKR 228

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+ +             LL    ++  LL  +   ++ ++     +  K    +   +R 
Sbjct: 229 ALHIIQQLRLEGSEPIILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNRRG 284

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           ++ E+L   ++  +R+ +  +       ++
Sbjct: 285 MIGEALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|37525268|ref|NP_928612.1| DNA polymerase III subunit delta [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784695|emb|CAE13595.1| DNA-directed DNA polymerase III delta chain [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 346

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 116/311 (37%), Gaps = 23/311 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++ +G++  L+ E  +  +K              L+       I   +N   S SLF
Sbjct: 18  RNCYLIWGNEPLLLQESQDHIRKAAEKNAFTEHFTYTLDNHTEWDEI---FNICQSLSLF 74

Query: 81  SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF---- 134
           + ++ +  L+        + + L ++      + ++I+      +   L K  E      
Sbjct: 75  ASRQTLTLLLPENGPNTTIAEQLVKLAELLHPDILLIL------RGLKLTKAQENSHWFK 128

Query: 135 ---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
               + + +SC    +  L   + +     +  + ++A Q+L     G+ +A    L++L
Sbjct: 129 ILGKNGVYVSCQTPEQNRLPQWVAQRAKAMKLVLEEQANQLLCYCYEGNLLALAQALERL 188

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S     D  +T   V++ + D         +++ + GK   A  +          +  LL
Sbjct: 189 SL-LYPDGKLTLHRVENAVNDAAHFTPYHWVDSLLSGKAKRAWHILKQLKQEDCEAVILL 247

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ +    + ++ +    +   +R++L  +L+   ++ ++  +H
Sbjct: 248 RTVQRELLLLLTLK--RQSTTTPMKTLLDQHR--VWQNRRSLLTSALQRLTQHDLQRAIH 303

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 304 LLVQMERQIKQ 314


>gi|167847304|ref|ZP_02472812.1| DNA polymerase III subunit delta [Burkholderia pseudomallei B7210]
          Length = 334

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|254804591|ref|YP_003082812.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis
           alpha14]
 gi|254668133|emb|CBA04737.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis
           alpha14]
 gi|325144089|gb|EGC66397.1| DNA polymerase III, delta subunit [Neisseria meningitidis
           M01-240013]
          Length = 332

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSVQSVRNSLR 276


>gi|207856112|ref|YP_002242763.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206707915|emb|CAR32203.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 343

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 94/260 (36%), Gaps = 8/260 (3%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + ++I++ N++ K
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLLLIVRGNKLTK 119

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                          + +SC    +  L   +          +   A Q+L     G+ +
Sbjct: 120 AQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYCYEGNLL 179

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A    L++LS     D  +T   V+  + D         ++A + GK   A+ +      
Sbjct: 180 ALAQALERLSL-LWPDGKLTLPRVEQAVNDATHFTPFHWVDALLMGKSKRALHILQQLRL 238

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L   +
Sbjct: 239 EGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALLRLH 294

Query: 303 KNLVRETLHKIDHRIHLARK 322
              +R+ +  +       ++
Sbjct: 295 PAQLRQAVQLLTRTEITLKQ 314


>gi|254673636|emb|CBA09188.1| DNA polymerase III, delta subunit [Neisseria meningitidis alpha275]
          Length = 332

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPSKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLQEEGEEPVLLLWAVSEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|325202497|gb|ADY97951.1| DNA polymerase III, delta subunit [Neisseria meningitidis
           M01-240149]
 gi|325207752|gb|ADZ03204.1| DNA polymerase III, delta subunit [Neisseria meningitidis NZ-05/33]
          Length = 332

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIGADALALFAERVEGNLLAARQEINKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLREEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|254519890|ref|ZP_05131946.1| DNA polymerase III subunit delta [Clostridium sp. 7_2_43FAA]
 gi|226913639|gb|EEH98840.1| DNA polymerase III subunit delta [Clostridium sp. 7_2_43FAA]
          Length = 343

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 117/329 (35%), Gaps = 26/329 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D+ LI E IN    N         + + L+ L    +     N   +      K
Sbjct: 20  YIFCGLDEELIKEGINLIVNNTVDKSLLDLNYIRLDGLTTNFDE--IMNACETMPFMGDK 77

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIKNICNHIIII-----KSNEIKKNNTLRKI 130
           K++++   +           K+ + + + +       ++I+        +  K N   K 
Sbjct: 78  KVVVVYRAAFLKDKTDSANTKIYNEVLKYLKDLPPYTVLIMYYLFNDKRDTPKKNNKIKS 137

Query: 131 AEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            +K + V+    Y D          +EE      K I K   +     +  +    + E 
Sbjct: 138 LDKVSKVV----YFDRLKKDRYYKKVEEVFKANGKEIGKIEARYFAEKVQNNFDIIKREA 193

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            K+ SY      IT++ +  +I ++    I ++I+   Q K   AI L D  L       
Sbjct: 194 DKIISYTNG-KQITKRDIDKLIANSSEDDIFDLIDLISQRKAEKAIDLLDELLFKSDQHM 252

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++      F+ L +I I+ + + ++   +  K +      ++  L      +    ++ 
Sbjct: 253 LIISNIENNFKRLYEIKILSQ-NGLNTNDLASKYKLPTFICEK--LVNQCNKFTVKQLQR 309

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILY 337
            +       +   K   ++K +  + +L+
Sbjct: 310 LMEICLETENKL-KTSGIDKTMEMELMLF 337


>gi|332521845|ref|ZP_08398294.1| DNA polymerase III, delta subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042517|gb|EGI78719.1| DNA polymerase III, delta subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 334

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 102/263 (38%), Gaps = 8/263 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I ++    + N+       F+ +VL   ++   +           + +
Sbjct: 18  PIYLLMGEEAYYIDKISEFIESNVLAEEERGFNQMVLYGRDVT--VEDIVGNAKRFPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            K++++++      + +D L +       + ++++  K   + K   + K  +K   V  
Sbjct: 76  DKQVVVVKEAQDLSRTIDKLSDYAKNPQPSTVLVLCYKYKSVDKRKAVYKAIKKSGIVFE 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                DN+  + D I  +L      I+ +A Q+L+  LG +     NEL+KL     E  
Sbjct: 136 SKKLYDNQ--VPDWIRRTLSTKGYKITPKASQMLVEFLGTNLAKINNELEKLQIVLPEGS 193

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQK- 257
            IT  H+++ I  +      E+  A        A  +  +F  + K     +    L   
Sbjct: 194 EITPSHIEENIGISKDYNNFELRKAIGARNDAKAFKIITYFGDNPKDNPMVVTVSLLYNF 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQ 280
           F  L ++H + + S  S    ++
Sbjct: 254 FSQLLQLHGMNDKSPRSVASALR 276


>gi|298208818|ref|YP_003716997.1| hypothetical protein CA2559_11278 [Croceibacter atlanticus
           HTCC2559]
 gi|83848745|gb|EAP86614.1| hypothetical protein CA2559_11278 [Croceibacter atlanticus
           HTCC2559]
          Length = 336

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 119/337 (35%), Gaps = 42/337 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             +  YG +   I ++ +  + N+       F+ + L   ++   +    +      + +
Sbjct: 20  PFYFLYGEEAFFIDQISDYIEDNVLTEEERGFNQMTLYGRDVS--VEDIVSNAKRYPMMA 77

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII------------KSNEIKKNNTL-- 127
           ++++I+++      + ++ L           ++++                + K   L  
Sbjct: 78  ERQVIIVKEAQDLSRTIEKLVSYAENPQPTTLLVVCYKYKKLDKRKKLYKALNKEGVLFE 137

Query: 128 -RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
            +K+ +                 +   I  +L      I+++A  +L   LG D     N
Sbjct: 138 GKKLYDNQ---------------ISPWIIRTLKSQGYGITQKASHMLAEFLGSDLGKVSN 182

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL KL     + I IT +H+++ I  +      E+ NA  +     A  + ++F  +   
Sbjct: 183 ELNKLKLILPKGIEITPEHIEENIGISKDFNNFELQNAIGEKNKLKAHRIINYFSQNPKD 242

Query: 247 SHALLHGFL--QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +  +L   L    F  L ++H +   ++ S    +  +        ++ +  + R ++  
Sbjct: 243 NPIVLTSALLFSFFSKLLQVHSLSNINDKSVATALGIS--PYF--SKDYITAA-RNYSMR 297

Query: 305 LVRETLHKIDHRIHLAR---KKKYLEKNIIFQTILYI 338
              + +  +      ++          +++ + ++ I
Sbjct: 298 DASQAISLLRVMDLKSKGVDSNAIPSGDLLKEFLVKI 334


>gi|110804711|ref|YP_688231.1| DNA polymerase III subunit delta [Shigella flexneri 5 str. 8401]
 gi|110614259|gb|ABF02926.1| DNA polymerase III, delta subunit [Shigella flexneri 5 str. 8401]
          Length = 343

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 112

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 113 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRTKQLNLELDDAAN 167

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 283 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|157146742|ref|YP_001454061.1| DNA polymerase III subunit delta [Citrobacter koseri ATCC BAA-895]
 gi|157083947|gb|ABV13625.1| hypothetical protein CKO_02516 [Citrobacter koseri ATCC BAA-895]
          Length = 343

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 98/264 (37%), Gaps = 8/264 (3%)

Query: 62  EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           +   +  T +++  + SLF+ ++  ++L+        + + L  +      + ++I++ N
Sbjct: 56  DTSTDWGTLFSQCQAMSLFASRQTLLLLLPENGPNAAINEQLATLSGLLHDDLLLIVRGN 115

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ K             + + +SC    +  L   +          +   A Q+L     
Sbjct: 116 KLTKAQENAAWYTSLAGTGVQVSCQTPEQAQLPRWVAARAKQNNLQLDDAANQLLCYCYE 175

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +  
Sbjct: 176 GNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLMGKSKRALHILQ 234

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                      LL    ++  +L  +   ++ ++     +  K    +   +R ++ ++L
Sbjct: 235 QLRLEGSEPVILLRTLQRELLMLVNLK--RQSAHTPLRTLFDKHR--VWQNRRGMIGDAL 290

Query: 299 RIWNKNLVRETLHKIDHRIHLARK 322
               +  +R+ +  +       ++
Sbjct: 291 NRLQQTQLRQAVQLLTRTEITLKQ 314


>gi|139439598|ref|ZP_01773011.1| Hypothetical protein COLAER_02038 [Collinsella aerofaciens ATCC
           25986]
 gi|133774939|gb|EBA38759.1| Hypothetical protein COLAER_02038 [Collinsella aerofaciens ATCC
           25986]
          Length = 334

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 96/243 (39%), Gaps = 7/243 (2%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA  E     + S  +       ++  G+D       +++ K  +  +    F+   L+ 
Sbjct: 1   MARSEYEGLREGSAMSETGLLPAYLIVGTDGVKRDHAVSRMKARLEKSGMVEFN---LDE 57

Query: 61  LEIQKNIST--FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK 117
            ++ K+         +N+  + S+ ++++++  S   K V + L E +       + +I 
Sbjct: 58  RDMTKDPDIESIIGSLNTFPMGSEFRLVILDGCSKLAKAVSEPLVEYLASPSPTTVCLII 117

Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
           ++ + KN  L K   K      I C    +  L   +++      KSIS  A + L++  
Sbjct: 118 ADSLAKNTRLYKAIAKIDKKAVIDCSGTKRWELPRRVQQMATQHGKSISTAAAEELVSRS 177

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G +     N+L KL+   +E   I    V+  I  T  +   + +NA     +  ++ L 
Sbjct: 178 GENTRMLDNDLAKLAQ-MVEAPQIELADVERWIVRTAEVQPWDFLNAVSARDMRRSLELF 236

Query: 238 DFF 240
           +  
Sbjct: 237 NLL 239


>gi|261377883|ref|ZP_05982456.1| DNA polymerase III, delta subunit [Neisseria cinerea ATCC 14685]
 gi|269145736|gb|EEZ72154.1| DNA polymerase III, delta subunit [Neisseria cinerea ATCC 14685]
          Length = 332

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +   +      LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLHSAGGAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L+    +   + + ++   +++KN    K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGETLQTFASRLPEDTVTVVLLPKLEKNQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLGKIGLFIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDVFQLAGAWMKGDVPRVCRLLDGLQEEGEEPVLLLWAIAEDI 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAASL-KQGQSVQSVRNSLR 276


>gi|190575350|ref|YP_001973195.1| DNA polymerase III subunit delta [Stenotrophomonas maltophilia
           K279a]
 gi|190013272|emb|CAQ46906.1| putative DNA polymerase III [Stenotrophomonas maltophilia K279a]
          Length = 345

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 101/283 (35%), Gaps = 12/283 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   + E  +  +            +   +  +   + +      N+ SLFS
Sbjct: 19  PVYLIAGPETLRVLEAADAIRARARAAGIAEREVFDADGRDF--DWNQLDASFNAPSLFS 76

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++++ +   +    K   + + +       + +++I ++E  K +   K AE    +  
Sbjct: 77  ARRLVEVRLPSGKPGKDGAEVISQFCANPAPDVVLMITASEWSKAHQ-GKWAEAVNRIGV 135

Query: 140 IS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +S  +      L D IE  L          A Q L   + G+ +A+  E+ KL+      
Sbjct: 136 LSVAWAIKPHELPDWIERRLRGKGLRADPAAVQRLAERVEGNLLAAAQEIDKLALLADGQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + ++ ++ D     +  ++ AT  G+    + +            AL+   +++ 
Sbjct: 196 P-LDVERMESLVADAARYDVFRLLEATFSGQPPAVLRMLAGLRGEGEAVAALMPMVIREL 254

Query: 259 QL-LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                   +     N++ E       + I   ++   + +L+ 
Sbjct: 255 LAGAGLARVQARGGNLAAEM----KSRGIWESRQAPYKRALQR 293


>gi|333007449|gb|EGK26929.1| DNA polymerase III, delta subunit [Shigella flexneri VA-6]
          Length = 340

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAAN 164

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 224 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRTLFDKHR--VWQNR 279

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 280 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 311


>gi|224539979|ref|ZP_03680518.1| hypothetical protein BACCELL_04891 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518405|gb|EEF87510.1| hypothetical protein BACCELL_04891 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 339

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    NI       F+L V+   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEEPYYIDLIADYITDNILTETEKEFNLTVVYGADV--DIATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                      L   I   +      +  +A  +L   +G D      EL+KL    L  
Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGIDVEPKATAMLADFVGADLSRLTGELEKLII-TLPK 194

Query: 199 I--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL 255
               +T + ++  I  +      E+ +A ++  +  A  +  +F  + K     +    L
Sbjct: 195 GYTRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLL 254

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F     +       +      +           ++ L  ++R +N     + + +I +
Sbjct: 255 FGFFSNLMLAYYAPEKSEQGIANMLGLRTP--WQAKDYLA-AMRRYNGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNPSLSDGDILRELVFKI 337


>gi|166365270|ref|YP_001657543.1| DNA polymerase III subunit delta [Microcystis aeruginosa NIES-843]
 gi|166087643|dbj|BAG02351.1| DNA polymerase III delta subunit [Microcystis aeruginosa NIES-843]
          Length = 327

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 120/313 (38%), Gaps = 25/313 (7%)

Query: 25  IFY-GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL---F 80
           IFY G D+  I    NQ  KN+ +   DP + +  N  +I  + +    E  + ++   F
Sbjct: 4   IFYWGEDEFAI----NQAVKNLQVKLLDP-NWIQFNYDKINGDRNEAIIEALNQAMTPVF 58

Query: 81  S-KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEK 133
               +++ + +        + +   L+  +     N  +++ S + K ++ L+  K  + 
Sbjct: 59  GMGNRLVWLADTVICQQCSEDIFKELQRTLPNLPENSYLLLTSAK-KPDSRLKSSKFIQN 117

Query: 134 FTSV---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
              V     I  +   +  +   + E        ++ +A ++L   +G +      EL+K
Sbjct: 118 QAEVKEFELIPPWKVEE--IAQRVREIAKEVGVKLTPDAIELLAEAVGNNSRLLWMELEK 175

Query: 191 LSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           L  +       I ++ +  ++ +       ++ +A ++ +   A+ L +  L       A
Sbjct: 176 LRLFKNNSAGTIDKKDILSLV-NASNQSSLQLASAILKRETGKALELVNELLNRNENPLA 234

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +      +F+    + +  E      EK I    +   P +   +++ ++ ++   +  T
Sbjct: 235 ITATLGGQFRTWAIVKLKIEEGEKD-EKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLAT 293

Query: 310 LHKIDHRIHLARK 322
           L  +    +  ++
Sbjct: 294 LPILLELEYRLKR 306


>gi|313649715|gb|EFS14139.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 2457T]
 gi|332763360|gb|EGJ93600.1| DNA polymerase III, delta subunit [Shigella flexneri K-671]
          Length = 340

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAAN 164

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 224 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 279

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 280 RGMMGEALNRLSQPQLRQAVQLLTRTELTLKQ 311


>gi|293606891|ref|ZP_06689239.1| DNA-directed DNA polymerase III delta subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292814743|gb|EFF73876.1| DNA-directed DNA polymerase III delta subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 351

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 105/300 (35%), Gaps = 17/300 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           + +Q+    L     ++   G +  L+ E ++  + +     +     +V++A   + + 
Sbjct: 12  EHLQRPGNRLA---PLYTVSGDEPLLVTEAVDTLRASARNAGYTDRLSMVMDA---RSDW 65

Query: 68  STFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEI 121
           S       S SLF  ++I  I I      K   D L ++  +       + +I+I    +
Sbjct: 66  SAVTAATQSVSLFGDRRILEIKIPTGKPGKSGADTLTKLAEQAEKQPDADTLILIALPRL 125

Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K     +  +      + +      +  L   +   L    +       Q +   + G+
Sbjct: 126 DKATRESRWVQALARGGVMVDIANIERGRLPAWVGMRLARQNQRADAATLQWMADKVEGN 185

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            +A+  E+QKL      +  +  + V+  + +     +  + +A + G I   I + D  
Sbjct: 186 LLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDIARTIRMIDGL 244

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A       +L    ++ +LL +I             ++++    I      +  ++L  
Sbjct: 245 RAEGEALPLVLWAVGEEIRLLARI-AEARALGQDANGLMRRLR--IFGAHERLALQALNR 301


>gi|74311176|ref|YP_309595.1| DNA polymerase III subunit delta [Shigella sonnei Ss046]
 gi|73854653|gb|AAZ87360.1| DNA polymerase III delta subunit [Shigella sonnei Ss046]
          Length = 343

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVTARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|320157155|ref|YP_004189534.1| DNA polymerase III subunit delta [Vibrio vulnificus MO6-24/O]
 gi|319932467|gb|ADV87331.1| DNA polymerase III delta subunit [Vibrio vulnificus MO6-24/O]
          Length = 341

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 118/304 (38%), Gaps = 13/304 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  LI E  +  +K         F      A++   + +  ++   + SLFS
Sbjct: 18  PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +E         + + L  +      + +++I  +++ K     K  +       
Sbjct: 75  SRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC   +   L   +     +      ++A Q+L     G+  A    L+KL+     D
Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    +++ +   +   +   I+A ++GK      +     A  + +  LL    ++ 
Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317
            LL ++    + +++     +Q  EK+ I   K+ +   +L       +R+ L  +    
Sbjct: 254 LLLLQMQQQLQQNSM-----MQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308

Query: 318 HLAR 321
            LA+
Sbjct: 309 ILAK 312


>gi|167904279|ref|ZP_02491484.1| DNA polymerase III subunit delta [Burkholderia pseudomallei NCTC
           13177]
          Length = 344

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 107/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSMLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|167895891|ref|ZP_02483293.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 7894]
          Length = 325

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|298492086|ref|YP_003722263.1| DNA polymerase III subunit delta ['Nostoc azollae' 0708]
 gi|298234004|gb|ADI65140.1| DNA polymerase III, delta subunit ['Nostoc azollae' 0708]
          Length = 328

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 110/294 (37%), Gaps = 16/294 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++++G D   I + +   +  I       F+       +    I    N+  + +  +
Sbjct: 2   PIYVYWGEDDFAIEKAVVVLRDRILDPLWTSFNYTAFPPDQADAVIQAL-NQAMTPAFGA 60

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAE 132
             ++  + N +      + VL  L+  +     +  +++ S       +K    L++ A+
Sbjct: 61  GGRLAWLVNSTLCQQCPENVLSELQRTLPVIPEDSYLLLTSRNKPNERLKATKFLKQFAQ 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                L +  +      L+  + ++       ++    ++L  ++G D     NE++KL 
Sbjct: 121 FREFPL-VPPWKTEL--LVQAVNQAAQTVGVKLTAPTAELLAESIGNDTRLLYNEMEKLR 177

Query: 193 SYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            Y       +  + V  ++ +T    ++ +  A   G    A+ +    + +  P   ++
Sbjct: 178 LYIRGSNEPLDVKIVTQLVKNTTQNTLQ-LAAAIRTGDTAKALGILRNLINAAEPGLRIV 236

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
              + +F+    + I+ E    + + I Q  E +  P +   LQ+ ++  +   
Sbjct: 237 ATLIGQFRTWLWVKIMMEAGECNPQAITQGAEVS-NPKRIYFLQQEVKSLSVQQ 289


>gi|183598112|ref|ZP_02959605.1| hypothetical protein PROSTU_01476 [Providencia stuartii ATCC 25827]
 gi|188020270|gb|EDU58310.1| hypothetical protein PROSTU_01476 [Providencia stuartii ATCC 25827]
          Length = 344

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 115/302 (38%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +G++  LI E  +  +K         F      +LE   +    ++   + SLF+ +
Sbjct: 21  YLIWGNEPLLIQESQDAIRKTAQTQG---FEEHFTFSLEQHTDWDEIFSLCQALSLFTSR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +   +++        + + L ++      + +++++  ++ K        +      + I
Sbjct: 78  QSLTLILPENGPSAAMAEKLIQLSQLLHPDILLLLRGQKLTKAQENSAWFKAISHEAVYI 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC       L   + +     Q S+  EA Q+L     G+ +A    L++LS     D  
Sbjct: 138 SCLTPEYQRLPQWVAKRAHNMQLSLETEANQLLCYCYEGNLLALAQALERLSL-LYPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V+  + D         ++A + GK   A  + +        +  LL    ++  L
Sbjct: 197 LTLPRVETAVNDAAHFTPYHWVDALLAGKSRRAWHILEQLQREDTETVILLRAIQRELML 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +   ++      + +  + +  I   +R +L  +L+  + + ++  L  +      A
Sbjct: 257 LLTLK--RQSVTTPLKTLFDQHK--IWQSRRPLLSAALQRLSLHQLQSALLLLTQAELHA 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|51244740|ref|YP_064624.1| hypothetical protein DP0888 [Desulfotalea psychrophila LSv54]
 gi|50875777|emb|CAG35617.1| hypothetical protein DP0888 [Desulfotalea psychrophila LSv54]
          Length = 452

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 77/184 (41%), Gaps = 12/184 (6%)

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC----------YPDNKIHLMDLIEESL 158
              +I+I+ +  + K        +K      I C            D    + + + ++L
Sbjct: 192 PAGNILILTAETVDKRQRFFSYCKKS--ATTIDCSVASGSNSAAQKDQLAVVQEQLNKTL 249

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
            + QK ++ +A ++ +  +G   +A  NE +KL+ Y  +   I+   V+++   T    +
Sbjct: 250 GLFQKKMAADAVRLFIDRVGCHPVAVINEAEKLALYAGDRPKISIDDVRELTSQTREDAL 309

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
            E   A   G+   ++++    L++ + S A+L      ++ L  I  ++    + ++++
Sbjct: 310 FEFTEALSSGQAAKSLIILKRILSNNIHSLAVLATLRNFYRRLLLIRGVQLKHRVPWQQM 369

Query: 279 IQKT 282
             + 
Sbjct: 370 PAQQ 373


>gi|332094312|gb|EGI99363.1| DNA polymerase III, delta subunit [Shigella boydii 5216-82]
          Length = 343

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS   L+   +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSLLWLD-GKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|222151484|ref|YP_002560640.1| hypothetical protein MCCL_1237 [Macrococcus caseolyticus JCSC5402]
 gi|222120609|dbj|BAH17944.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 275

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 104/280 (37%), Gaps = 16/280 (5%)

Query: 70  FWNEINSTSLFSKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIK--S 118
              +  +    S  K ++I N          +T +  +D +   I      + +I    S
Sbjct: 1   MLEDAMTFPFLSDAKAVVINNAFVFTGEKVKTTFEIDIDEILAFIEGFEGPNYVIFTVYS 60

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           +++ +   L K  +    V  I     ++  +  +I+  L    K I ++A   ++   G
Sbjct: 61  DKLDERKKLVKRIKANHEVKKIEPL--DEQEIKKIIKSILNENFKDIKEDALNEMIHLTG 118

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D  A   EL KL  Y  +  +IT+  V  ++  +    +  + +    GK   AI L  
Sbjct: 119 IDYGAVMKELDKLVLYSGDAPIITKSDVTQVVSRSLEQNVFLLTDYITSGKKAEAIQLLK 178

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             +  K     LL     +++L  ++ I+ E    S ++I ++ +  + P +  +    +
Sbjct: 179 DLIHMKEEPIKLLALITSQYRLYYQVKILSE-KGFSEQQIAREVK--VHPYRVKLSMRKV 235

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           R      + + +       +  +     +  I+   IL I
Sbjct: 236 RQIPLKHLLDVIDACAEADYELKSSYMDKVLILELFILKI 275


>gi|315292108|gb|EFU51460.1| DNA polymerase III, delta subunit [Escherichia coli MS 153-1]
 gi|324006320|gb|EGB75539.1| DNA polymerase III, delta subunit [Escherichia coli MS 57-2]
          Length = 325

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 36  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 96  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 270

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 271 ALNRLSQSQLRQAVQLLTRTELTLKQ 296


>gi|323704214|ref|ZP_08115793.1| DNA polymerase III, delta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536280|gb|EGB26052.1| DNA polymerase III, delta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 330

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 108/251 (43%), Gaps = 12/251 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++FYG ++ LI E I + K  +     +  +  ++       N     + + +    S
Sbjct: 18  PAYVFYGEERFLIDEAIKKLKSKLIAEGTEIMNYSMIE----DANDKNIIDSLETLPFMS 73

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + + +LI++    KK+ D   + IIK     N  + I  +  ++I     + K   K  +
Sbjct: 74  EHRFVLIKDDDVLKKINDDTVDAIIKRIEGGNTDSCIAFVFKDKIDTRKRIFKAISKHGA 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           ++       ++   ++ +   + I  K I K   + ++ ++G D     NE++K+ SY  
Sbjct: 134 IVNFEHLKFDEA--VNYVGFFVRIYGKVIKKPVAEYIVKSVGVDLYTLLNEIKKIVSYS- 190

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           +   +    VKD+I  +    + +++NA    +   AI + +  + ++     +L    +
Sbjct: 191 DGQEVLIDDVKDVISASTAESVFKLVNAIGLRQEKVAIYILNKMILNEENPIGILAMIAR 250

Query: 257 KFQLLEKIHII 267
           +F++L K   +
Sbjct: 251 QFRILIKAKYL 261


>gi|301329163|ref|ZP_07222160.1| DNA polymerase III, delta subunit [Escherichia coli MS 78-1]
 gi|300844510|gb|EFK72270.1| DNA polymerase III, delta subunit [Escherichia coli MS 78-1]
          Length = 328

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 39  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 97

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 98  -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 152

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 153 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 211

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 212 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 267

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 268 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 299


>gi|24112060|ref|NP_706570.1| DNA polymerase III subunit delta [Shigella flexneri 2a str. 301]
 gi|30062171|ref|NP_836342.1| DNA polymerase III subunit delta [Shigella flexneri 2a str. 2457T]
 gi|24050886|gb|AAN42277.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 301]
 gi|30040416|gb|AAP16148.1| DNA polymerase III, delta subunit [Shigella flexneri 2a str. 2457T]
 gi|281600024|gb|ADA73008.1| DNA polymerase III, delta subunit [Shigella flexneri 2002017]
 gi|332760989|gb|EGJ91277.1| DNA polymerase III, delta subunit [Shigella flexneri 4343-70]
 gi|332761269|gb|EGJ91555.1| DNA polymerase III, delta subunit [Shigella flexneri 2747-71]
 gi|332768258|gb|EGJ98443.1| DNA polymerase III, delta subunit [Shigella flexneri 2930-71]
 gi|333007986|gb|EGK27462.1| DNA polymerase III, delta subunit [Shigella flexneri K-218]
 gi|333021583|gb|EGK40833.1| DNA polymerase III, delta subunit [Shigella flexneri K-304]
          Length = 343

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|315924405|ref|ZP_07920627.1| DNA polymerase III, delta subunit [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622284|gb|EFV02243.1| DNA polymerase III, delta subunit [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 354

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 99/287 (34%), Gaps = 28/287 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++F G ++ +   +  Q  + +     +  +++     + +  I           + S
Sbjct: 33  NIYLFTGPEEYIAKMMEKQLIQTVIPEGLNQLNVMYFKNKDFE--IGEVIASCRQLPMMS 90

Query: 82  KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + +++++   +      + K  D     +     + I+I+   + K +   +K+ +    
Sbjct: 91  EHRVVVLREETGLCHSSDTKTADAFCAYLENPEPSTILIVH--DSKPD-KRKKVYKTLKK 147

Query: 137 VLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLG------GDRIASRNELQ 189
           V A+  Y   N + L + I        K I     + L+           D     N + 
Sbjct: 148 VAAVVDYEKLNMVELENWIAMRFKRAHKKIGTRTLRNLIERTRYLTSDACDMAMIDNRVA 207

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +L  Y   + L+  Q V +++ D     I ++I+  + G +  AI +   F         
Sbjct: 208 QLIDYLGAEELVQHQDVAEVVPDAVDDNIFKMIDHALGGNMAGAIEMLGRFYLQGESPFG 267

Query: 250 LLHGFLQKFQLLEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR 291
           +      +      I  + +        +    I +K  + +  +K+
Sbjct: 268 VFGLLAGQ------IRTMMQVCLLSHRRMPVNMIAKKVGRPVFVVKK 308


>gi|169825540|ref|YP_001695715.1| hypothetical protein Bsph_p126 [Lysinibacillus sphaericus C3-41]
 gi|168994817|gb|ACA42356.1| Hypothetical yqeN protein [Lysinibacillus sphaericus C3-41]
          Length = 310

 Score = 79.2 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 125/312 (40%), Gaps = 32/312 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G++  LI E   +  +   ++    F +   +     ++          + LF  
Sbjct: 2   IHLLFGTEDFLIAEKKKEICRVEGVSISS-FDMRETSLTSALED-------AQMSDLFGG 53

Query: 83  KKIILIEN-----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNE--IKKNNTLRK-IA 131
           KKI+ + +       T KK+    D L + +     +  +++  N   + K   + K + 
Sbjct: 54  KKIVFLNDSYFLTGDTSKKITHDTDALLDYLESPNPDSTVVLVVNNEKLDKRKKVVKELL 113

Query: 132 EKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +K T+   A   Y     +    + E   +  K+++++A  I+   LG D      EL K
Sbjct: 114 QKATTTFEAKPLY-----NAEKWLVERCKVYGKTLTRQAAVIMQQQLGKDLFLLDTELTK 168

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L    +++  I+E+ ++ ++  T    + +I++  I  K   A+ + D        S  +
Sbjct: 169 LVL-AVDNPTISEKDLEGVLSRTLEGDVFKIVDHVIY-KRSEALEILDDLFRLGHDSIQI 226

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L     +F+L+ ++  I E          +   K I P + ++ +E  ++++   +++ L
Sbjct: 227 LLILAGQFRLIHQVKAIHELGESP-----KNILKGIHPYRLSMAEEQCQLYSIEDLQQRL 281

Query: 311 HKIDHRIHLARK 322
                     ++
Sbjct: 282 KDCAELDLQMKR 293


>gi|300959209|ref|ZP_07171288.1| DNA polymerase III, delta subunit [Escherichia coli MS 175-1]
 gi|300314194|gb|EFJ63978.1| DNA polymerase III, delta subunit [Escherichia coli MS 175-1]
          Length = 325

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 36  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 95

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 96  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 155

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 156 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 214

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 215 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 270

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 271 ALNRLSQTQLRQAVQLLTRTELTLKQ 296


>gi|188534476|ref|YP_001908273.1| DNA polymerase III subunit delta [Erwinia tasmaniensis Et1/99]
 gi|188029518|emb|CAO97395.1| DNA polymerase III, delta subunit [Erwinia tasmaniensis Et1/99]
          Length = 343

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 112/305 (36%), Gaps = 17/305 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  G++  L+ E  +  +       + + FS+ +    + Q+     ++   + SLFS 
Sbjct: 21  YLLSGNEPLLLQETHDAIRTAAQQQGFTEHFSVALEAGTDWQE----IFSTCQALSLFSS 76

Query: 83  KK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSV 137
           ++  ++++        + + L  +      + ++I+++  + K   N+T  K     T+ 
Sbjct: 77  RQTLLLILPENGPNAAMSEQLLTLSTLLHSDILLILRATRLTKAQENSTWYKAF--STNA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + + C       L   +         ++   A Q+L     G+ +A    L++LS     
Sbjct: 135 VMVPCQTPEHAQLPRWVTNRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-LWP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A + GK   A+ +     +       LL    + 
Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRSEDGEPVILLRTLQRD 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
             LL  +        I    +  +    +   +R +  ++L+  +   + + L  +    
Sbjct: 254 LLLLLTLQRQMT--QIPLRALFDQHR--VWQNRRALFGDALQRISAPQLAQALRLLTQTE 309

Query: 318 HLARK 322
              ++
Sbjct: 310 LTLKQ 314


>gi|187934397|ref|YP_001885083.1| DNA polymerase III subunit delta [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722550|gb|ACD23771.1| DNA polymerase III, delta subunit [Clostridium botulinum B str.
           Eklund 17B]
          Length = 344

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 115/324 (35%), Gaps = 18/324 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D+ LI + IN           D  +L+ ++ ++   +     N   +  + S K
Sbjct: 20  YIFCGLDEELIKDSINSILNKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77

Query: 84  KIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAE 132
           K++++            ++ K     L+          +I+  + +++ +K N  +K+  
Sbjct: 78  KVVIVYRANFLKDKSDEASNKIYKSILKYASDMPPYTILIMYHLFNDKREKPNKNKKLNS 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
               +  + C    +   +  I +   I +K+I +         +  +    + E+ KL 
Sbjct: 138 LDKLITVVHCDKLRRDSYIKKINDLFKINKKNIGRIELIYFAEKVQSNFDIIKREIDKLI 197

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           SY  +   IT++ +  +I  +    + +++    Q KI  A+ +    L        ++ 
Sbjct: 198 SYT-DGKEITKRDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQHMLIIS 256

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              + F  L  I              + +        ++  L      + +  +   L K
Sbjct: 257 NIQRHFIKLYDIKTGL-RQGKKISNFMTELRLPQFVCEK--LVAQSSKFTEKQLS-ELVK 312

Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336
           +        K   L+K +  + +L
Sbjct: 313 LCVNTENNLKSSGLDKTMEMELLL 336


>gi|15676606|ref|NP_273750.1| DNA polymerase III subunit delta [Neisseria meningitidis MC58]
 gi|7225937|gb|AAF41125.1| DNA polymerase III, delta subunit [Neisseria meningitidis MC58]
 gi|316983688|gb|EFV62669.1| DNA polymerase III, delta subunit [Neisseria meningitidis H44/76]
 gi|325200607|gb|ADY96062.1| DNA polymerase III, delta subunit [Neisseria meningitidis H44/76]
          Length = 332

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|218767830|ref|YP_002342342.1| DNA polymerase III subunit delta [Neisseria meningitidis Z2491]
 gi|121051838|emb|CAM08144.1| putative DNA polymerase III, delta subunit [Neisseria meningitidis
           Z2491]
 gi|319410080|emb|CBY90414.1| DNA polymerase III delta subunit [Neisseria meningitidis WUE 2594]
          Length = 332

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 7/265 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +      + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEALDALRAAAKKQGYLNREVYTADNAF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKTGGEALQDFAARLPEDTVTLVLLPKLEKTQLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL     + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLGLLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +       ++  A ++G +     L D           LL    +  
Sbjct: 193 HTVNIDEAQTAVANVARFDAFQLAGAWMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDV 252

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE 283
           + L ++         S + +     
Sbjct: 253 RTLIRLAAAL-KQGQSIQSVRNSLR 276


>gi|300951138|ref|ZP_07165003.1| DNA polymerase III, delta subunit [Escherichia coli MS 116-1]
 gi|300449593|gb|EFK13213.1| DNA polymerase III, delta subunit [Escherichia coli MS 116-1]
          Length = 327

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 38  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 97

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 98  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 272

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 273 ALNRLSQTQLRQAVQLLTRTELTLKQ 298


>gi|301049836|ref|ZP_07196776.1| DNA polymerase III, delta subunit [Escherichia coli MS 185-1]
 gi|300298431|gb|EFJ54816.1| DNA polymerase III, delta subunit [Escherichia coli MS 185-1]
 gi|324010482|gb|EGB79701.1| DNA polymerase III, delta subunit [Escherichia coli MS 60-1]
          Length = 327

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 38  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 97

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 98  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 157

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 158 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 216

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 217 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 272

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 273 ALNRLSQSQLRQAVQLLTRTELTLKQ 298


>gi|227545002|ref|ZP_03975051.1| DNA polymerase III, delta subunit [Lactobacillus reuteri CF48-3A]
 gi|300909963|ref|ZP_07127423.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri SD2112]
 gi|227185019|gb|EEI65090.1| DNA polymerase III, delta subunit [Lactobacillus reuteri CF48-3A]
 gi|300892611|gb|EFK85971.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           reuteri SD2112]
          Length = 343

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 130/336 (38%), Gaps = 27/336 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           V++  G  + L  + I+ F   I         ++ +   +++    +   ++  +T  F 
Sbjct: 18  VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMATPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++I     L+ EK+       LD L++ +     + I++  +   ++     + K 
Sbjct: 74  ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFAAPYEKLDGRKGIVKQ 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + + +   P ++      +   L      IS+ A   L+     D       L K
Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  I +  V  ++  +    + +++ A ++     A+ L    LA + P   +
Sbjct: 192 LKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309
               + +F+LL +I  +     ++   +  +   N+ P +  +  ++ R ++   +    
Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308

Query: 310 --LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             L +I+  +   ++   L   +    +L  +Q + 
Sbjct: 309 LGLIRIEQSLKTTQRDPSL---LFQLFMLQYSQQSK 341


>gi|261366905|ref|ZP_05979788.1| DNA polymerase III, delta subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571020|gb|EFB76555.1| DNA polymerase III, delta subunit [Subdoligranulum variabile DSM
           15176]
          Length = 344

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 116/342 (33%), Gaps = 21/342 (6%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K L     ++ FY SD+ L+    +   K + +   D     +L+               
Sbjct: 10  KRLQSGCALYYFYASDEALVR---SAAAKALKVLNQDDPETTILDGPTPTVEEIVLA--A 64

Query: 75  NSTSLFSKKKIIL---IENLSTEKKVLDCLEEIIIKNICNHII---IIKS--NEI---KK 123
            + S F  K+++L   I   +   K L  L E +        +   +I+    ++   K+
Sbjct: 65  GTISFFGGKRLVLMPLIRPSTYSDKDLQELCETLADTENAIFVMTSVIEEKFGKLRPGKR 124

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              L    E     + I      +  L  +          S +  ++  LL   G D+  
Sbjct: 125 EQKLIAACEGIGYCVQI--NKPGRSELQSMARSWAEDAGASFAPGSESALLDRCGEDQFL 182

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
            +NE+ KL++      +IT++ V+ +   T      E++   + G+   A       L  
Sbjct: 183 LQNEIAKLAALA-NYGIITQEMVQQLGTVTLDADTFEMVELVVSGRTDQAQKRLKTLLEL 241

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWN 302
           +     +    +  +  L ++ ++ +    S   + +          +    +++   + 
Sbjct: 242 QNDPIMIAGALIGNYLDLYRV-LLGKRGRRSLADVAKDFGYGGKWSYRLGKTEKTASRFK 300

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           ++ + + L  +       +  K     ++ + +  ++    +
Sbjct: 301 RHQLEQCLCILQKLDLDLKSSKLDADLLLQKALCELSLAGRR 342


>gi|324016097|gb|EGB85316.1| DNA polymerase III, delta subunit [Escherichia coli MS 117-3]
          Length = 326

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 37  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 96

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 97  GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 156

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 157 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 215

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 216 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 271

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 272 ALNRLSQTQLRQAVQLLTRTELTLKQ 297


>gi|170731976|ref|YP_001763923.1| DNA polymerase III subunit delta [Burkholderia cenocepacia MC0-3]
 gi|169815218|gb|ACA89801.1| DNA polymerase III, delta subunit [Burkholderia cenocepacia MC0-3]
          Length = 364

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKTLAAIPNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLSMQGQRVASGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLTGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTTAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307


>gi|315299168|gb|EFU58422.1| DNA polymerase III, delta subunit [Escherichia coli MS 16-3]
          Length = 328

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 39  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 98

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 99  GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 158

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 159 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 217

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 218 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 273

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 274 ALNRLSQSQLRQAVQLLTRTELTLKQ 299


>gi|300990029|ref|ZP_07179071.1| DNA polymerase III, delta subunit [Escherichia coli MS 45-1]
 gi|300407201|gb|EFJ90739.1| DNA polymerase III, delta subunit [Escherichia coli MS 45-1]
          Length = 331

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 42  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 220

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 276

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 277 ALNRLSQSQLRQAVQLLTRTELTLKQ 302


>gi|82775908|ref|YP_402255.1| DNA polymerase III subunit delta [Shigella dysenteriae Sd197]
 gi|309785929|ref|ZP_07680558.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1617]
 gi|81240056|gb|ABB60766.1| DNA polymerase III, delta subunit [Shigella dysenteriae Sd197]
 gi|308926040|gb|EFP71518.1| DNA polymerase III, delta subunit [Shigella dysenteriae 1617]
          Length = 343

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAHAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVERAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|167817413|ref|ZP_02449093.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 91]
          Length = 321

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAVG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|301643946|ref|ZP_07243972.1| DNA polymerase III, delta subunit [Escherichia coli MS 146-1]
 gi|301077681|gb|EFK92487.1| DNA polymerase III, delta subunit [Escherichia coli MS 146-1]
          Length = 331

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 42  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 220

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 276

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 277 ALNRLSQTQLRQAVQLLTRTELTLKQ 302


>gi|300927260|ref|ZP_07142988.1| DNA polymerase III, delta subunit [Escherichia coli MS 182-1]
 gi|300416748|gb|EFK00059.1| DNA polymerase III, delta subunit [Escherichia coli MS 182-1]
          Length = 332

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 43  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 102

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 103 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 162

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 163 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 221

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 222 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 277

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 278 ALNRLSQTQLRQAVQLLTRTELTLKQ 303


>gi|315616441|gb|EFU97058.1| DNA polymerase III, delta subunit [Escherichia coli 3431]
 gi|323153637|gb|EFZ39885.1| DNA polymerase III, delta subunit [Escherichia coli EPECa14]
          Length = 340

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 110

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 111 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 170

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 171 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 230 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 285

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 286 ALNRLSQTQLRQAVQLLTRTELTLKQ 311


>gi|171910492|ref|ZP_02925962.1| DNA polymerase III, delta subunit, putative [Verrucomicrobium
           spinosum DSM 4136]
          Length = 382

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 93/255 (36%), Gaps = 28/255 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-----STFWNEINSTSL 79
           +  G+D   + E   +  +  +      F + ++  +               + + +   
Sbjct: 18  VVMGTDDARMKEAALKLSREQTPADAGDFGVDMIEGIAESAEHCGQIVRRVLDALQTLPF 77

Query: 80  FSKKKIILIENL--------STEKKVLDCLEEII----IKNICNHIIIIKSNEIKKNNTL 127
           F  +K++ ++N               ++ +E II         +   ++ ++++ K    
Sbjct: 78  FGGEKLVWLKNANFLADSVVGRSNAAVEGIEAIIDYVEKHLPPDVKFLLSASQVDKR--- 134

Query: 128 RKIAEKFTSVLAISCY--PDN-----KIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           R   ++ T +  +  +  PD      +  ++ L+E        S   EA ++L+   G D
Sbjct: 135 RSAYKRLTKLADVRVFDKPDTSKTGWEDEVIPLVERRARELGVSFENEALEMLVQLAGED 194

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                +E++KLS Y  +   ++   V+ ++       + E+ NA  +  +  A+ L    
Sbjct: 195 TRQLDSEVEKLSLYT-DGRRVSVDDVRLLVPLNRAGVVFELGNALGKRDLRRALELVRTL 253

Query: 241 LASKMPSHALLHGFL 255
           +     +  +L   +
Sbjct: 254 IYQGQNAIGILLAAI 268


>gi|226331017|ref|ZP_03806535.1| hypothetical protein PROPEN_04947 [Proteus penneri ATCC 35198]
 gi|225201812|gb|EEG84166.1| hypothetical protein PROPEN_04947 [Proteus penneri ATCC 35198]
          Length = 273

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 97/259 (37%), Gaps = 13/259 (5%)

Query: 21  HFVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              ++ +G++  L+ E    I    K      H  F+L      +   + +  ++   S 
Sbjct: 18  RQSYLLWGNEPLLLQESQDAIQSVAKAQGFIEHYQFTL------DNNTDWNEIYSLCQSL 71

Query: 78  SLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-F 134
           SLFS+++  ++ +        + + L  +  +   + ++I++ N++ K     +  +   
Sbjct: 72  SLFSQRQSLLLHLPENGPNAAMSEKLTRLSQELHQDLLLILRGNKLTKAQENSEWFKTLS 131

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   ISC       L + +         ++ ++  Q+L     G+ +A    +++LS  
Sbjct: 132 QNGTYISCLTPELDKLPNWVARRAKQKGLALDEQGNQLLCYCYEGNLLALAQAIERLSL- 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   V+  + D         ++A + GK   A  +             LL   
Sbjct: 191 LYPDGKLTLPRVEAAVNDASHFTPYHWVDALLTGKTQRAWHILQQLKREDSEPVILLRTL 250

Query: 255 LQKFQLLEKIHIIKECSNI 273
            ++   L  +H   + +++
Sbjct: 251 QRELMQLITLHRESKTASL 269


>gi|169343608|ref|ZP_02864607.1| DNA polymerase III, delta subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169298168|gb|EDS80258.1| DNA polymerase III, delta subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 348

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S +
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|323191279|gb|EFZ76543.1| DNA polymerase III, delta subunit [Escherichia coli RN587/1]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQQQLRQAVQLLTRTELTLKQ 314


>gi|33864609|ref|NP_896168.1| DNA polymerase III subunit delta [Synechococcus sp. WH 8102]
 gi|33632132|emb|CAE06588.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 321

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 110/321 (34%), Gaps = 21/321 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       IN   + +        +L  L+  E  +      +E  +    S
Sbjct: 2   PIHLIWGDDAAARDRAINGLIEKVVDPSWASLNLSRLDGAEAGQAAQAL-DEARTPPFAS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
            ++++L++          ++ D  E  +     +  +++ +   K +  LR        +
Sbjct: 61  GERLVLLQRSPFCNGCPTELADRFEAALTLIPDSSHLVLVNPS-KPDGRLRTTKALQKRI 119

Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            A         +    D       L++ +       +  +A   L+  +G D     +EL
Sbjct: 120 KAGLDQEQSFPLPAVWDGAGQ-RQLVQRTAEALGLRLEPDAIDALVDAIGTDSARLESEL 178

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KLS      I I+   V +++       ++ + +A ++G   +AI   D  + +  P+ 
Sbjct: 179 RKLSL---RSITISADLVAELVGGLATNALQ-VGDALLEGNPGDAIARWDALIEAGEPAL 234

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     + +    + ++++        I +       P +  ++++ L+         
Sbjct: 235 RIVATLSGQIRGWLWVSLMEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPPQRFLS 293

Query: 309 TLHKIDHRIHLARKKKYLEKN 329
            L ++       ++       
Sbjct: 294 LLGRLLEVEARLKRGSQPGDA 314


>gi|333010051|gb|EGK29486.1| DNA polymerase III, delta subunit [Shigella flexneri K-272]
 gi|333020884|gb|EGK40144.1| DNA polymerase III, delta subunit [Shigella flexneri K-227]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLITLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|284920440|emb|CBG33501.1| DNA polymerase III, delta subunit [Escherichia coli 042]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                     +  LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEAVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|167740198|ref|ZP_02412972.1| DNA polymerase III subunit delta [Burkholderia pseudomallei 14]
          Length = 336

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTLIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +      + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGAANPDVLMLVTLPRLDAATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + + D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIHDAVLNVARYDVFKLNEAMLAGDAARLSRMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|295677675|ref|YP_003606199.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1002]
 gi|295437518|gb|ADG16688.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1002]
          Length = 375

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 12/261 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  +  +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDLIRAAARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K+  D L+ +      + + +I    +               + +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKALASTVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++   V+D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPSGSLSFDQVQDAVLNVARYDVFKLNEAMLAGDVGRLARMLDGLRGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISF 275
           +++ + L +I           
Sbjct: 255 VEEVRTLLRIKRGVAAGKPLA 275


>gi|40063249|gb|AAR38076.1| DNA polymerase III, delta subunit, putative [uncultured marine
           bacterium 577]
          Length = 336

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 116/292 (39%), Gaps = 14/292 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  YG +  L  E  +  +K   +  +    +  +N    + ++    N ++    F +K
Sbjct: 20  YTVYGEEPLLAIESADLIRKMARMDGYIEREIFTINNQFKKSDLLLRSNSLSL---FGEK 76

Query: 84  KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA---EKFTSVL 138
           ++I   + +    K+    +E+       + + ++   +I K   + K     EK  S++
Sbjct: 77  RLIDIRVPSGKPGKEGGKAIEDYCCSLPPDTLTLVTLPKIDKQGKITKWFKTLEKTGSMI 136

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           ++        HL D I   L I  +    +  +     + G+ +A+  E++KL+      
Sbjct: 137 SVP--LVEFNHLPDWINHRLSIQNQRTDPDTLRFFAEKVEGNLLAANQEIKKLAL-LYPP 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             ++   +K+ + +     I ++ ++ + G+I   I++             +L     + 
Sbjct: 194 GTLSFTQIKNAVMEVARYDIFKLSDSMLTGEIARFILILKGLQGEGAAVPFILAILAGQI 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           + L  I    + S  ++ +++++   N+   ++ I+  + +     L+ + L
Sbjct: 254 RSLIIIRKGLD-SGKTYTQLMREA--NVWGDRQEIMGNAAKRVGLKLLVKAL 302


>gi|17158710|ref|NP_478221.1| DNA polymerase III subunit delta [Nostoc sp. PCC 7120]
 gi|17134659|dbj|BAB77217.1| alr7574 [Nostoc sp. PCC 7120]
          Length = 319

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 112/262 (42%), Gaps = 20/262 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+++YG D   + + IN             F+ + L+  E +   +  + E+ +     
Sbjct: 2   PVYLYYGEDTYSLNQKINHLVNQNVHAEWKDFNYIKLSGNE-KNITAKVFTEVMTLPFGD 60

Query: 82  KKKII------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN------TLRK 129
             KI+      LIE+LS E      LE  + +   ++I++I ++  K ++      T+ K
Sbjct: 61  GNKIVHTDSDHLIESLSNEDN-NQELENQLSRIPASNILLI-ASNKKPDSRRTVVKTILK 118

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            A++    L + C+  +K  +++LI +   I Q  ++ +    L+  +G +   + +E  
Sbjct: 119 YAQQEEFPL-VPCW--DKKGIVNLIGKYAAIHQVKLTPDVTDYLVEAIGNNTARADSEFA 175

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+ Y +E  +I+ + +K ++ + +  Y +++  A ++     AI   D  L S      
Sbjct: 176 KLAVYAIE-KIISLEEIKQLVSNHNTDY-QKLTIAMLRNHSNLAIAQVDKLLDSNEHPLK 233

Query: 250 LLHGFLQKFQLLEKIHIIKECS 271
           ++      F+         E  
Sbjct: 234 IVATITSIFRTWLITKAGVEAK 255


>gi|323164097|gb|EFZ49905.1| DNA polymerase III, delta subunit [Shigella sonnei 53G]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|225851289|ref|YP_002731523.1| DNA polymerase III, delta subunit [Persephonella marina EX-H1]
 gi|225645206|gb|ACO03392.1| DNA polymerase III, delta subunit [Persephonella marina EX-H1]
          Length = 332

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 115/317 (36%), Gaps = 17/317 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLV 56
           MA     + I+  +    L   V + YG ++ L  +LI++ K       H    D  S+ 
Sbjct: 1   MAETNIIQLIKNFSFEDLL--PVNLVYGKEELLKRQLIDKVKSFKGEDIHILWGDETSVK 58

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116
            +  +      S+ +++ N   L+  +  I        ++ LD L +I   +     II 
Sbjct: 59  EIEEIFSS---SSLFSKGNIAVLWDLESFIKNLKKGDTERFLDTLRKI--NSPDRFFIIS 113

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
             +++      + + E    +++    P      +  I++ +    K I       L + 
Sbjct: 114 NKDKLPAKEPYKSLKEIANIIVSAPLTP---KAFVLSIKKKIEGNGKKIDDRTVLYLSSK 170

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           L  D + ++ E++KL  Y  +   ITE+ +  ++       I   +N         A+ +
Sbjct: 171 LKNDLMYAKQEIEKLLLYVSDKDEITEEDIDKVVIPKIEENIFVFLNRFFSKDPK-AVEI 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               + +      +    L +   L     + +      + +  +      P ++   Q+
Sbjct: 230 FINLIETTHHPFEVQSFLLGQLNKLLVFRSLLD-EGKPLDAVFSQLGIK-HPAQKGTFQK 287

Query: 297 SLRIWNKNLVRETLHKI 313
            + + +K  + E + ++
Sbjct: 288 LVSVLSKEDLIEMIKEL 304


>gi|209517541|ref|ZP_03266381.1| DNA polymerase III, delta subunit [Burkholderia sp. H160]
 gi|209502074|gb|EEA02090.1| DNA polymerase III, delta subunit [Burkholderia sp. H160]
          Length = 375

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 92/261 (35%), Gaps = 12/261 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +           S+   +      + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTADRYF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K+  D L+ +      + + +I    +               + +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKALAATVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++   V+D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPSGSLSFDQVQDAVLNVARYDVFKLNEAMLAGDVGRLARMLDGLRGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISF 275
           +++ + L +I           
Sbjct: 255 VEEVRTLLRIKRGVAAGKPLA 275


>gi|26246621|ref|NP_752661.1| DNA polymerase III subunit delta [Escherichia coli CFT073]
 gi|91209688|ref|YP_539674.1| DNA polymerase III subunit delta [Escherichia coli UTI89]
 gi|110640869|ref|YP_668597.1| DNA polymerase III subunit delta [Escherichia coli 536]
 gi|117622856|ref|YP_851769.1| DNA polymerase III subunit delta [Escherichia coli APEC O1]
 gi|191173966|ref|ZP_03035484.1| DNA polymerase III, delta subunit [Escherichia coli F11]
 gi|218557578|ref|YP_002390491.1| DNA polymerase III subunit delta [Escherichia coli S88]
 gi|227884380|ref|ZP_04002185.1| DNA polymerase III subunit delta [Escherichia coli 83972]
 gi|237707386|ref|ZP_04537867.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA]
 gi|331656667|ref|ZP_08357629.1| DNA polymerase III, delta subunit [Escherichia coli TA206]
 gi|26107020|gb|AAN79204.1|AE016757_108 DNA polymerase III, delta subunit [Escherichia coli CFT073]
 gi|91071262|gb|ABE06143.1| DNA polymerase III, delta subunit [Escherichia coli UTI89]
 gi|110342461|gb|ABG68698.1| DNA polymerase III, delta subunit [Escherichia coli 536]
 gi|115511980|gb|ABJ00055.1| DNA polymerase III subunit delta [Escherichia coli APEC O1]
 gi|190905742|gb|EDV65363.1| DNA polymerase III, delta subunit [Escherichia coli F11]
 gi|218364347|emb|CAR02022.1| DNA polymerase III, delta subunit [Escherichia coli S88]
 gi|226898596|gb|EEH84855.1| DNA polymerase III subunit delta [Escherichia sp. 3_2_53FAA]
 gi|227838466|gb|EEJ48932.1| DNA polymerase III subunit delta [Escherichia coli 83972]
 gi|294493627|gb|ADE92383.1| DNA polymerase III, delta subunit [Escherichia coli IHE3034]
 gi|307552510|gb|ADN45285.1| DNA polymerase III subunit delta [Escherichia coli ABU 83972]
 gi|307627922|gb|ADN72226.1| DNA polymerase III subunit delta [Escherichia coli UM146]
 gi|320194178|gb|EFW68810.1| DNA polymerase III delta subunit [Escherichia coli WV_060327]
 gi|323952782|gb|EGB48650.1| DNA polymerase III [Escherichia coli H252]
 gi|323958399|gb|EGB54105.1| DNA polymerase III [Escherichia coli H263]
 gi|331054915|gb|EGI26924.1| DNA polymerase III, delta subunit [Escherichia coli TA206]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 289 ALNRLSQSQLRQAVQLLTRTELTLKQ 314


>gi|300214463|gb|ADJ78879.1| DNA polymerase III, delta subunit [Lactobacillus salivarius CECT
           5713]
          Length = 340

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 126/328 (38%), Gaps = 22/328 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L    + +   N        F+  + +       I+T   +  S   FS
Sbjct: 17  NVYLVLGEDTYL-NNKVKELFWNYIPESDREFNAAIYDMETTS--IATAIADAISAPFFS 73

Query: 82  KKKIILIEN-----LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           +K++++I +       T+K  ++     L   +     + ++++ ++  K ++  + + E
Sbjct: 74  EKRLVIITHPYFLTGDTKKHSIEQDVNELIGYLQNPSPDTLLVVLASYEKLDSRKKVVKE 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +    +     N+  +   + +     +  I K A   L+     +     NEL KL 
Sbjct: 134 LKSKAEIVDTSSLNESEIRQYLIKYCDEKKVIIEKRAIDRLIQLTNANFSKIMNELSKLI 193

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
              ++   IT   V  ++  +    + ++++     KI  A  L    L  K     +  
Sbjct: 194 IATVDTKKITVSEVDRLVTKSLEQNVFDLVDFVRDKKIKEAFELYHELLEQKEEPIKINA 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--- 309
             + +F+LL ++ I+ +  +     I    +  + P +  +  ++ R ++ N ++     
Sbjct: 254 ILIGQFRLLLQVKIL-QKHSYDQGSIASTLK--VHPFRVKLAMQNARKFSNNSLKSAYLG 310

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337
           L +I+ ++  + +   L    +FQ  L 
Sbjct: 311 LAEIEEKLKTSSQNPEL----LFQLFLT 334


>gi|300996728|ref|ZP_07181515.1| DNA polymerase III, delta subunit [Escherichia coli MS 200-1]
 gi|300304443|gb|EFJ58963.1| DNA polymerase III, delta subunit [Escherichia coli MS 200-1]
          Length = 332

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 43  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 102

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 103 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 162

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 163 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 221

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 222 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFNKHR--VWQNRRGMMSE 277

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 278 ALNRLSQSQLRQAVQLLTRTELTLKQ 303


>gi|255320936|ref|ZP_05362110.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SK82]
 gi|262380211|ref|ZP_06073366.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SH164]
 gi|255302105|gb|EET81348.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SK82]
 gi|262298405|gb|EEY86319.1| DNA polymerase III, delta subunit [Acinetobacter radioresistens
           SH164]
          Length = 331

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 139/330 (42%), Gaps = 30/330 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+++  +           +   +  +    +N +
Sbjct: 10  KRVADARGTWILHGQEPLLEQNLLDAFRQSWQVQET---ERQRYDISSV-SDWKHVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS+   + +  N+  +   L  L+  I  N  N ++++     S+ +K  +   +
Sbjct: 66  NSLSLFSQHLAVEVHGNIKPDAGALKQLKNYIQHNESNLLLVVMPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+ + + YP  +  ++ +  E L      + +EA Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVPLVANYPKERQQILSIEAEKL---GIQLDQEAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++S    E  LI  +H+   + D       ++ +A + G +  +I +  + LAS  P  
Sbjct: 181 MRVSDTFPEQRLILTEHLYACLQDQSRYSTYDLSDALLAGNLAQSIRIFQYLLASGEPMS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L    ++ +LL ++          FE+     +  I   K +  Q++LR  N      
Sbjct: 241 LILWTISREMRLLMQL----------FEQPQNALQLGIWKTKISSYQQALRRLNPRQFLT 290

Query: 309 ---TLHKIDHRIHLARKKKYLEKNIIFQTI 335
               L  ID  I    ++    +++  Q I
Sbjct: 291 WPGLLLHIDAAIKGMSEEN--AEHLCQQAI 318


>gi|16128623|ref|NP_415173.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|82543085|ref|YP_407032.1| DNA polymerase III subunit delta [Shigella boydii Sb227]
 gi|89107509|ref|AP_001289.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170080219|ref|YP_001729539.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170080320|ref|YP_001729640.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|193063341|ref|ZP_03044431.1| DNA polymerase III, delta subunit [Escherichia coli E22]
 gi|194429735|ref|ZP_03062251.1| DNA polymerase III, delta subunit [Escherichia coli B171]
 gi|238899917|ref|YP_002925713.1| DNA polymerase III, delta subunit [Escherichia coli BW2952]
 gi|256020592|ref|ZP_05434457.1| DNA polymerase III subunit delta [Shigella sp. D9]
 gi|256023748|ref|ZP_05437613.1| DNA polymerase III subunit delta [Escherichia sp. 4_1_40B]
 gi|260842866|ref|YP_003220644.1| DNA polymerase III, delta subunit HolA [Escherichia coli O103:H2
           str. 12009]
 gi|260853892|ref|YP_003227783.1| DNA polymerase III, delta subunit HolA [Escherichia coli O26:H11
           str. 11368]
 gi|307137257|ref|ZP_07496613.1| DNA polymerase III subunit delta [Escherichia coli H736]
 gi|331641143|ref|ZP_08342278.1| DNA polymerase III, delta subunit [Escherichia coli H736]
 gi|332281780|ref|ZP_08394193.1| DNA polymerase III delta subunit [Shigella sp. D9]
 gi|123452|sp|P28630|HOLA_ECOLI RecName: Full=DNA polymerase III subunit delta
 gi|15988195|pdb|1JR3|D Chain D, Crystal Structure Of The Processivity Clamp Loader Gamma
           Complex Of E. Coli Dna Polymerase Iii
 gi|16974835|pdb|1JQJ|C Chain C, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
 gi|16974836|pdb|1JQJ|D Chain D, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
 gi|61679670|pdb|1XXI|A Chain A, Adp Bound E. Coli Clamp Loader Complex
 gi|61679675|pdb|1XXI|F Chain F, Adp Bound E. Coli Clamp Loader Complex
 gi|238537886|pdb|3GLF|A Chain A, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537891|pdb|3GLF|F Chain F, Crystal Structure Of The Ecoli Clamp Loader Bound To
           Primer- Template Dna
 gi|238537900|pdb|3GLG|A Chain A, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537905|pdb|3GLG|F Chain F, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
           Loader Bound To Primer-Template Dna
 gi|238537914|pdb|3GLH|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537919|pdb|3GLH|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537924|pdb|3GLH|K Chain K, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
           Peptide
 gi|238537929|pdb|3GLI|A Chain A, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|238537934|pdb|3GLI|F Chain F, Crystal Structure Of The E. Coli Clamp Loader Bound To
           Primer-Template Dna And Psi Peptide
 gi|145729|gb|AAA23675.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|145785|gb|AAB59047.1| DNA polymerase III delta subunit [Escherichia coli]
 gi|1651267|dbj|BAA35287.1| DNA polymerase III, delta subunit [Escherichia coli str. K12
           substr. W3110]
 gi|1778558|gb|AAB40841.1| DNA-directed DNA polymeraseIII delta chain [Escherichia coli]
 gi|1786859|gb|AAC73741.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|81244496|gb|ABB65204.1| DNA polymerase III delta subunit [Shigella boydii Sb227]
 gi|169888054|gb|ACB01761.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|169888155|gb|ACB01862.1| DNA polymerase III, delta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|192930925|gb|EDV83529.1| DNA polymerase III, delta subunit [Escherichia coli E22]
 gi|194412216|gb|EDX28522.1| DNA polymerase III, delta subunit [Escherichia coli B171]
 gi|238860834|gb|ACR62832.1| DNA polymerase III, delta subunit [Escherichia coli BW2952]
 gi|257752541|dbj|BAI24043.1| DNA polymerase III, delta subunit HolA [Escherichia coli O26:H11
           str. 11368]
 gi|257758013|dbj|BAI29510.1| DNA polymerase III, delta subunit HolA [Escherichia coli O103:H2
           str. 12009]
 gi|260450193|gb|ACX40615.1| DNA polymerase III, delta subunit [Escherichia coli DH1]
 gi|309700878|emb|CBJ00175.1| DNA polymerase III, delta subunit [Escherichia coli ETEC H10407]
 gi|315135306|dbj|BAJ42465.1| DNA polymerase III subunit delta [Escherichia coli DH1]
 gi|323158906|gb|EFZ44917.1| DNA polymerase III, delta subunit [Escherichia coli E128010]
 gi|323938402|gb|EGB34656.1| DNA polymerase III [Escherichia coli E1520]
 gi|323943055|gb|EGB39214.1| DNA polymerase III [Escherichia coli E482]
 gi|323972095|gb|EGB67309.1| DNA polymerase III [Escherichia coli TA007]
 gi|331037941|gb|EGI10161.1| DNA polymerase III, delta subunit [Escherichia coli H736]
 gi|332104132|gb|EGJ07478.1| DNA polymerase III delta subunit [Shigella sp. D9]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|168212920|ref|ZP_02638545.1| DNA polymerase III, delta subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715509|gb|EDT27691.1| DNA polymerase III, delta subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S +
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|167837873|ref|ZP_02464756.1| DNA polymerase III subunit delta [Burkholderia thailandensis
           MSMB43]
          Length = 323

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 110/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +          F+   ++ +E   + ST      + SLF +
Sbjct: 19  LYVVYGDEPLLAQEACDKIRAAARAAG---FTERSVHTVERGFDWSTPIGASQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K   D L+ +   +  + ++++    +                 +A
Sbjct: 76  RQLVELRIPSGKPGKDGADALKTLAGADNPDVLMLVTLPRLDSATQKSAWFTALANGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + I + L +  + ++       A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWIGQRLALQGQRVAPGDDGRRALAFVAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + ++D + +     + ++  A + G       + D           +L   
Sbjct: 195 LYPAGALTFEQIQDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEALVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  +   L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAVLVRENR--VWGPRERLVGPALSRVSEAALEHAL 307


>gi|322506761|gb|ADX02215.1| DNA polymerase III delta subunit [Acinetobacter baumannii 1656-2]
          Length = 329

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    E L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + + S  P  
Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGDLAQSIKIFQYLIGSGEPES 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L +ID  I 
Sbjct: 291 WSALLLQIDAAIK 303


>gi|313902202|ref|ZP_07835610.1| DNA polymerase III, delta subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467537|gb|EFR63043.1| DNA polymerase III, delta subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 420

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 100 CLEEIIIKNICNHIIIIK-SNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
            L   +     + +++I    ++  +   +R++        A++C P     L   +   
Sbjct: 157 ALLAYLDDPSPSAVLVISHPPDLDGRRAAVRRL---RQRGWAVACQPLRDEALGQWLARQ 213

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217
                K +  EA   L+ +   D     +EL K+++Y  +   IT   ++ +        
Sbjct: 214 AAAWGKELDPEAVAWLVESGEPDLRRLASELAKVATYVGDRRRITAADLRQVGVAVATAG 273

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFE 276
           + E+++A + G+   A+ L    L +  P   LL    +++++L     + ++  +++  
Sbjct: 274 VFELVDAIVAGRRRQAMELVGRLLDASEPPLRLLALIARQYRILAYAASLRRQGGDVADL 333

Query: 277 KIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +   +        ++    +  R    +     L  +   
Sbjct: 334 QAWLQLHP--FVARKAW--QQSRQLAPDRAMAALEAVLEA 369


>gi|300853975|ref|YP_003778959.1| DNA polymerase III subunit delta [Clostridium ljungdahlii DSM
           13528]
 gi|300434090|gb|ADK13857.1| DNA polymerase III, delta subunit [Clostridium ljungdahlii DSM
           13528]
          Length = 321

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 106/267 (39%), Gaps = 18/267 (6%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSKKKII 86
           G D+ LI E I    K +        + +  +   ++  +     N   +    S+KK++
Sbjct: 4   GIDELLIKENIKALIKKVINPNFMDLNYMKFDGSSLESFDP--VINACETLPFMSEKKVV 61

Query: 87  LIENLS----TEKKVLDCLEEI---IIKNICNHIII---IKSNEIKKNNTLRKIAEKFTS 136
           L+   S     + K+    + I   +       I+I   +  +  K++   RKI      
Sbjct: 62  LVYRASFFGEDKNKLSTEFKTIHSYLKNLPKYCILIFYYVFKS--KRDKPGRKIYSVDKD 119

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS-RNELQKLSSYC 195
           +  +         L + ++E      K I K   +I  + +  + ++   NE++KL  Y 
Sbjct: 120 ICVVKADKVKGKQLENKVQEFFYERGKDIKKLDLRIFCSLMSENNLSIIENEVEKLCCYT 179

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                I  + +K +   +    I +++NA    KI +A+ + +  +        +L    
Sbjct: 180 YG-RNIEREDMKKMFLRSGDEDIFDLVNAISDKKIKDALYMLNELMYKGYKISYILSMVE 238

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282
           ++F LL KI +  E   I+ E+I+++ 
Sbjct: 239 RQFNLLFKIKMCLE-ERITKEEIMKEL 264


>gi|292487608|ref|YP_003530480.1| DNA polymerase III subunit delta [Erwinia amylovora CFBP1430]
 gi|292898847|ref|YP_003538216.1| DNA polymerase III subunit delta [Erwinia amylovora ATCC 49946]
 gi|291198695|emb|CBJ45804.1| DNA polymerase III, delta subunit [Erwinia amylovora ATCC 49946]
 gi|291553027|emb|CBA20072.1| DNA polymerase III, delta subunit [Erwinia amylovora CFBP1430]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 102/292 (34%), Gaps = 15/292 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  +       +     V L   EI  +    ++   + SLF+ +
Sbjct: 21  YLLSGNEPLLLQEAQDAIRAAAQQQGYTEHVSVAL---EIGTDWQEIFSACQALSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138
           + +L+          + + L  +      + ++I+++  + K   N+   K      + +
Sbjct: 78  QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRATRLTKAQENSAWYKAF--SANAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A+ C       L   +         ++   A Q+L     G+ +A    L++LS     D
Sbjct: 136 AVPCQTPEHGQLPRWVTMRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+  + D         ++A + GK   A+ +     A       LL    +  
Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDSEPVILLRTLQRDL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            LL  +             +  +    +   +R +  E+L+      + + +
Sbjct: 255 LLLLTLQRQMAY--TPLRTLYDRHR--VWQNRRALFAEALQRLTATRLAKAI 302


>gi|209917900|ref|YP_002291984.1| DNA polymerase III subunit delta [Escherichia coli SE11]
 gi|209911159|dbj|BAG76233.1| DNA polymerase III delta subunit [Escherichia coli SE11]
          Length = 343

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENSAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|218440391|ref|YP_002378720.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424]
 gi|218173119|gb|ACK71852.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424]
          Length = 324

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 124/319 (38%), Gaps = 18/319 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F+G D   + + I + ++++       F+   L   +    I      +    +F 
Sbjct: 2   PVYLFWGEDDFAMTQEIEKLRQDLLDPNWVQFNYDKLTGDKADSIIEALNQAMT--PVFG 59

Query: 82  -KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAE-- 132
              +++ +   +      + +L  L+  +     +  +++ +++ K +  L+  K+ E  
Sbjct: 60  MGNRLVWLVETTICSQCSEALLSELQRTLPHIPTDSHLLLTTSK-KPDKRLKSTKLIEQY 118

Query: 133 -KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            K      I  +  ++  ++  ++         ++  A ++L  ++G +     NEL KL
Sbjct: 119 AKSQEFALIPPWKTDE--ILQKVQSLARSKGVKLTATAVELLAQSVGNNTRQLWNELDKL 176

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S Y  +   I    V   + + +     ++  A I+G+   A+ L    L    P+  ++
Sbjct: 177 SLY-GDHKPID-HDVVASLVNVNTQSSLQLAAAIIKGETPKALGLVADLLNHNEPALKIV 234

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + +F++   + +  E      EK +    +   P +  IL++ ++    + +  +L 
Sbjct: 235 ATLVGQFRVWTIVKLKLEAGEKD-EKALATAAELGNPKRVFILRKEVQGLKGSQLLGSLP 293

Query: 312 KIDHRIHLARKKKYLEKNI 330
            +       ++     + +
Sbjct: 294 ILLDLEFNLKRGADPLQTL 312


>gi|53713687|ref|YP_099679.1| hypothetical protein BF2396 [Bacteroides fragilis YCH46]
 gi|60681960|ref|YP_212104.1| hypothetical protein BF2480 [Bacteroides fragilis NCTC 9343]
 gi|253565635|ref|ZP_04843090.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216552|dbj|BAD49145.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60493394|emb|CAH08180.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251945914|gb|EES86321.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 339

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I+++  K   + +   L   AE   + +
Sbjct: 79  SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVVCHKHGALDRRKKL--AAEIEKTGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                   +  L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPGG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  +  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +   +       R+ L  ++R +      + + +I + 
Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLT-AMRKYTGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++      +   +I+ + +  I
Sbjct: 313 DAKSKGVGNTSISDGDILRELVFKI 337


>gi|21325117|dbj|BAB99739.1| DNA polymerase III delta subunit [Corynebacterium glutamicum ATCC
           13032]
          Length = 325

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 121/333 (36%), Gaps = 30/333 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYH------DPFSLVVLNALEIQKNISTFWNEINS 76
           V +  G D+ L  E       NI           D   +  L A EI +      + + S
Sbjct: 12  VHLVLGEDEFL-AERARI---NIVHDIRSSMASPDSLQVTTLKASEITQ--GELLDAL-S 64

Query: 77  TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            SLF++ +++++ N+  + +  V   L   +  +   ++I++ S   +  + ++K+ EK 
Sbjct: 65  PSLFAEDRVVVLTNMDQAGQDAVDLALSAAVDPSPGTYLIVMHSGGGRSKSMVKKL-EKV 123

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             V   +   D        +++     +  ++ +    LL  +G D     + + +L   
Sbjct: 124 AVVHDAAKLKD--RDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLVED 181

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + V+        +   +I ++   G++  A+      L       AL    
Sbjct: 182 T--QGNVTVEKVRAYYVGVAEVSGFDIADSACAGQMSKAVASTRRALQLGTSPVALAAAL 239

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---LH 311
             K   + +++  +    I+  ++ ++       +++    +  R W+ + V E    + 
Sbjct: 240 SMKVGQIARLYSTR--GRINGFELAKELGMPPFVVEKTA--KVARNWSGDAVSEAVILMA 295

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            +D  +             I   +  +A+ A +
Sbjct: 296 DLDAAVKGQSGDPEFA---IESAVRRVAELARR 325


>gi|150015706|ref|YP_001307960.1| DNA polymerase III subunit delta [Clostridium beijerinckii NCIMB
           8052]
 gi|149902171|gb|ABR33004.1| DNA polymerase III, delta subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 344

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 15/283 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D+  I + I+   K          +L+ ++ +    +     N   +     +K
Sbjct: 20  YIFCGLDEEFIKDGISLIIKKNIAEEFMDLNLIRIDGMNTSFDA--IMNACETMPFMGEK 77

Query: 84  KIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN--NTLRKIAE 132
           K++++          + S  K   D    I        +I+      K++  N  +K+A 
Sbjct: 78  KVVVVYRSNFLQDKTDSSGTKIYNDIKSYISNLPPYTVLIMYYLLNDKRDRPNKNKKLAT 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              S+  + C    +   +  + E      K I +         +  +    + E  KL 
Sbjct: 138 IGKSLTIVYCDKLKRDKYLKKVSEVFKEKGKQIGRTELSYFCEKVYNNFDIIKREADKLI 197

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           SYC  +  I ++ +  +I  +      +++      KI  AI      L        ++ 
Sbjct: 198 SYC-GEREIKKEDIDILISKSSEDDTFDLVELIATKKIDKAIDTMKEILYKSDQHMLIIS 256

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
              + F  L +I I    +    +  +          ++ I+Q
Sbjct: 257 AIQKHFLRLYEIKIKL-SNGKKVDDFMSDYRLPQFVCEKLIMQ 298


>gi|218288647|ref|ZP_03492924.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241304|gb|EED08479.1| DNA polymerase III, delta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 336

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 114/335 (34%), Gaps = 26/335 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ YGS+ GL     ++  +N   +     S++  +  E     +    E+ S SL   
Sbjct: 18  VYLLYGSEIGLFDWFCDELIRNQHFS-----SILRFDYQENGFEPAEM--ELCSYSLLGD 70

Query: 83  KKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + ++ + N             +D L   + + +    +++     K +   R++ +    
Sbjct: 71  RPLVYVRNATAFTPDGRSGPDVDRLAAYLEQPVAGRTLVLSVPSDKLDER-RRVTKLAKR 129

Query: 137 VLAISCYPDNKIHLMDLIE-ESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              +SC P        ++  E L   +  +I K+A   L        +A  NE  KL +Y
Sbjct: 130 HAVVSC-PVPSRDRDAMVRLERLARSKAVAIDKDALAELWRRTQSLTLAM-NEFDKLRAY 187

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 IT  HV +++       +   I+  +QG++ +     D        + +L+   
Sbjct: 188 AGG-GPITRDHVLELVPMQAEDSVFTWIDWAVQGQVASVFEALDGLTRQGYDAFSLIALL 246

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++ +L+            + E         + P            +++  +   +  + 
Sbjct: 247 ARQVRLMAFAKGAANLEQRAKEL-------GVHPYALRTAARQSARFSEQKLARLVRVLA 299

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349
                 ++ +   +  +   ++ +A  A       
Sbjct: 300 DAEWDVKRGRLAPEVALNLVLMELAHAASTTPRNR 334


>gi|170021003|ref|YP_001725957.1| DNA polymerase III subunit delta [Escherichia coli ATCC 8739]
 gi|169755931|gb|ACA78630.1| DNA polymerase III, delta subunit [Escherichia coli ATCC 8739]
          Length = 343

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEHLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|288801477|ref|ZP_06406929.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331558|gb|EFC70044.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 342

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 99/260 (38%), Gaps = 14/260 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G +   I ++ +    ++       F+  +L   ++    +   +      + S
Sbjct: 24  PVYILMGDESYYIDQITDAIANSVLKPEEQDFNQTILFGADVTA--AQVVDIAKGYPMMS 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++++++     K + D LE+ ++  + + I++   K+  I K   +   AE     + 
Sbjct: 82  SHRVVIVKEAQNVKSL-DALEKYLVNPMPSTILVWCHKNGLIDKRKKVVSKAES----VG 136

Query: 140 ISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           I      K    L   I + L      I  ++  ++  ++G D     +EL K+      
Sbjct: 137 IVFESKKKRDYELNTFINKYLKEKNVQIDDKSSDMIAEHVGADLSRLVSELDKIILSLDN 196

Query: 198 DIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254
               IT + V+  I  +      E+ +A I   +Y A ++ ++F  +      +A L   
Sbjct: 197 QNRIITPEMVEQKIGISKEFNTFELRSAIINKDVYKANLIINYFEKNPKSGSIYAFLPLL 256

Query: 255 LQKFQLLEKIHIIKECSNIS 274
              FQ L   +     SN +
Sbjct: 257 FSYFQNLMIAYYAPNRSNEA 276


>gi|224823413|ref|ZP_03696522.1| DNA polymerase III, delta subunit [Lutiella nitroferrum 2002]
 gi|224603868|gb|EEG10042.1| DNA polymerase III, delta subunit [Lutiella nitroferrum 2002]
          Length = 334

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 66  NISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           + S     + S SLF+  K++   I       +  + L+ +      + + ++   ++++
Sbjct: 60  DWSQLTEAMGSVSLFASLKLLELRIPGGKPGSEGGEALQRLAEAPPADTVTLVILPKLER 119

Query: 124 ---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
              ++      EK   V+  +    ++  L   I   L     S+S+EA       + G+
Sbjct: 120 VQLSSKWFAALEKAAVVVHAA--AVSRQQLPGWISRRLKAQGLSLSEEALSFFADRVEGN 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            +A+R E+ KL+        +    ++D + +     + ++  A + G       + D  
Sbjct: 178 LLAARQEVDKLAI-LHPGASLDLDAIRDAVANVARFDVFQLSAAWLGGDTVRVTRMLDGL 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIH 265
            A       +L  F +  ++L K+ 
Sbjct: 237 AAEGEAPVLVLWSFSEDVRMLLKLR 261


>gi|260866788|ref|YP_003233190.1| DNA polymerase III, delta subunit HolA [Escherichia coli O111:H-
           str. 11128]
 gi|257763144|dbj|BAI34639.1| DNA polymerase III, delta subunit HolA [Escherichia coli O111:H-
           str. 11128]
 gi|323179883|gb|EFZ65440.1| DNA polymerase III, delta subunit [Escherichia coli 1180]
          Length = 343

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 112

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 113 -----RGNKLSKAQENAAWFTALANRSVQVICQTPEQAQLPRWVAARAKQLNLELDDAAN 167

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 168 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 226

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             A+ +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 227 KRALHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 282

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 283 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|261380323|ref|ZP_05984896.1| DNA polymerase III, delta subunit [Neisseria subflava NJ9703]
 gi|284796840|gb|EFC52187.1| DNA polymerase III, delta subunit [Neisseria subflava NJ9703]
          Length = 333

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +      E   + +       S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   D L+    +   + + +I   +++K     K         +
Sbjct: 74  DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         L   I+  L      I  EA  +    + G+ +A+R E++KL+    + 
Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPQG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
            LI     +  +       + ++  A ++G       L D               +A  +
Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 254 RTLIRLTAALKQGQNIQSLR 273


>gi|110802048|ref|YP_699324.1| DNA polymerase III subunit delta [Clostridium perfringens SM101]
 gi|110682549|gb|ABG85919.1| DNA polymerase III, delta subunit [Clostridium perfringens SM101]
          Length = 348

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S K
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREID 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|260584665|ref|ZP_05852411.1| DNA polymerase III, delta subunit [Granulicatella elegans ATCC
           700633]
 gi|260157688|gb|EEW92758.1| DNA polymerase III, delta subunit [Granulicatella elegans ATCC
           700633]
          Length = 342

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 119/336 (35%), Gaps = 24/336 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +  L       F +++        ++   N  EI    +    +  S   F 
Sbjct: 17  PIYMVQGKEDYLQNWARQVFLESVVAPEDQELNVGRFNMEEISVQTAI--EDAESVPFFG 74

Query: 82  KKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            ++++++         +  S     L+ L+  +   + + +++  +   K ++  +KI +
Sbjct: 75  DRRLVMVDKPYFLTGEKEKSKIDHQLERLQFYLENPLDSSVVVFFAPYEKLDSR-KKIVK 133

Query: 133 KFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           +   V  +    D     +  +  +++  +     S+      + L  L      +  E+
Sbjct: 134 QLKKVAVL---LDASSLEEKDVRAMVQHKVQEQGVSMETSVLHLFLEKLHYSLTDAMREI 190

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL    ++  +I    V  ++  +    I E+  A ++     AI +    L  K    
Sbjct: 191 DKLILSAMDTKVIDSDLVATLVPKSLEQNIFELGEAVLRKDSKVAIEIYRDLLLQKEDPI 250

Query: 249 ALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            +    L +F+ LL+  ++ KE  +    + +      I P +  +     R ++  L+ 
Sbjct: 251 KMNAILLGQFRLLLQVSYLQKEGYHEPEMQKVLG----IHPYRVKLALGQSRKFSIALLE 306

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
                +    +  +    +++  +   IL   Q + 
Sbjct: 307 AAYRLLVETEYALKTGLGMKELQLETFILKFCQKSA 342


>gi|194468433|ref|ZP_03074419.1| DNA polymerase III, delta subunit [Lactobacillus reuteri 100-23]
 gi|194453286|gb|EDX42184.1| DNA polymerase III, delta subunit [Lactobacillus reuteri 100-23]
          Length = 343

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 124/319 (38%), Gaps = 24/319 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNEINSTSLFS 81
           V++  G  + L  + I+ F   I         ++ +   +++    +   ++  ++  F 
Sbjct: 18  VYLILGKQQVLQQQAIDAFISLIPENE----QVMNVGRYDMEATPLAVALDDAMASPFFG 73

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++I     L+ EK+       LD L++ +     + I++  +   ++     + K 
Sbjct: 74  ERRLVIINKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFAAPYEKLDGRKGIVKQ 133

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K  + + +   P ++      +   L      IS+ A   L+     D       L K
Sbjct: 134 LKK--TAVLVDASPLDERAARQRVRTQLSTAGFEISEAALDELVQRTNADYGMMDASLTK 191

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  I +  V  ++  +    + +++ A ++     A+ L    LA + P   +
Sbjct: 192 LKILAYREKKIDQSMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQLLAGQQPPLRI 251

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET- 309
               + +F+LL +I  +     ++   +  +   N+ P +  +  ++ R ++   +    
Sbjct: 252 NAVLVGQFRLLIQIK-VLSKRGLTQGSLASQL--NVHPYRIKLGLKTARDFSMQALENAY 308

Query: 310 --LHKIDHRIHLARKKKYL 326
             L +I+  +   ++   L
Sbjct: 309 LGLIRIEQSLKTTQRDPSL 327


>gi|291515518|emb|CBK64728.1| DNA polymerase III, delta subunit [Alistipes shahii WAL 8301]
          Length = 356

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 10/244 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G +   I  L +Q    I       F+ + +   + +       N      +  +
Sbjct: 30  IYLLMGEESYFIDALSDQLAATILDEAARAFNQITVYGRDSEA--GQVINLCRQMPMMGQ 87

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140
            ++++++     K + D L     K     I++I  K     K +   K      +   +
Sbjct: 88  YQVVILKEAQQLKGL-DKLALYTQKPSPTTILVICHKEKNADKRSAFYKGC--AANGTVL 144

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLEDI 199
                    +   +++ +     +I  +A  +L  +LG D     NE++KL  S      
Sbjct: 145 ESVRPRDYEIAAWLQQFIRQKGFTIDPKALSMLTDHLGTDIAKISNEIRKLTVSLPEGTQ 204

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH--GFLQK 257
            IT+  ++  I  +      E+  A +   +  A+M+A+ F  +   +  LL       +
Sbjct: 205 RITDADIEANIGISKDFNNFELCKAVVTRDMARALMIAEHFARNPKDNPLLLTVMALFGQ 264

Query: 258 FQLL 261
           F+ L
Sbjct: 265 FKEL 268


>gi|86133173|ref|ZP_01051755.1| DNA polymerase III delta subunit [Polaribacter sp. MED152]
 gi|85820036|gb|EAQ41183.1| DNA polymerase III delta subunit [Polaribacter sp. MED152]
          Length = 333

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 112/305 (36%), Gaps = 15/305 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  ++N+       F+L V+   +    I    +      + +
Sbjct: 18  PIYFLMGEEPYYIDKISDFIEENVLDESEKGFNLQVMYGRD--ATIEDIVSSAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++++++      + ++ L           +++I     K +   +       + L   
Sbjct: 76  ERQVLIVKEAQDLSRSIEKLVAYASNPQPTTVLVINYKYKKLDKRKKLHKAIAKTGLVYE 135

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   + D I   L   +  I  +A Q+L+  LG D     NEL KL+    ++ +I
Sbjct: 136 SKKLYDNKVADWIRRVLSGKKYQIEPKAAQMLVEFLGTDLSKIANELDKLTLILPQETII 195

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259
            + H+++ I  +      E++ A     +  A  + ++F+ +    P+   +      F 
Sbjct: 196 NDTHIEENIGISKDFNNFELLKAIGDKNVVKANRIINYFVENPKNNPTIMTISLLNNFFT 255

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ---ESLRIWNKNLVRETLHKIDHR 316
            L   H +    N S + + +    NI       ++    + R +    V + +  +   
Sbjct: 256 KLLLFHGL---QNKSKDAVSKALGVNIYF-----VEDYFSASRNYPMRKVAQVITMLRDA 307

Query: 317 IHLAR 321
              ++
Sbjct: 308 DVKSK 312


>gi|265764011|ref|ZP_06092579.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_16]
 gi|263256619|gb|EEZ27965.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_16]
 gi|301163399|emb|CBW22949.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 339

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I+++  K   + +   L   AE   + +
Sbjct: 79  SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVVCHKHGTLDRRKKL--AAEIEKTGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                   +  L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPGG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  +  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +   +       R+ L  ++R +      + + +I + 
Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLT-AMRKYTGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++      +   +I+ + +  I
Sbjct: 313 DAKSKGVGNTSISDGDILRELVFKI 337


>gi|169334725|ref|ZP_02861918.1| hypothetical protein ANASTE_01131 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257463|gb|EDS71429.1| hypothetical protein ANASTE_01131 [Anaerofustis stercorihominis DSM
           17244]
          Length = 343

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 20/254 (7%)

Query: 39  NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKV 97
           +  K  + +  ++ F+  V +  ++  +I+     I +  +  + ++ILI+   +  K  
Sbjct: 41  DSLKNALILKDYEDFNYSVFDGKKL--DINKISELIETLPMLDEHRLILIKSEYAKNKDF 98

Query: 98  LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156
              L EII     + +III S     K   L K  +K   ++    + +    L + I  
Sbjct: 99  SKKLNEIIKDIPPSTVIIIWSEGSFDKRTALFKTIKKEGDIVDFEKFKE--YKLENWIRS 156

Query: 157 SLLIGQKSISKEAKQILLANLG-------GDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            +      ++K+A    +   G        D     +E+ KLS   L    I  + VK I
Sbjct: 157 KIKNKNLILTKDAIGYFIEASGYLLDGSEVDLGYFVSEIDKLS--SLGKREIDLEDVKKI 214

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           I       I ++ +A        A  L      + +    +L   ++    LE +++ KE
Sbjct: 215 ISVNIKDEIFKLTDALRDKDTDYAFRLLSNLEYNNVNFMQILAVVIRN---LENMYLCKE 271

Query: 270 --CSNISFEKIIQK 281
                 S + I++ 
Sbjct: 272 YMKKRKSEQDIVKD 285


>gi|319942762|ref|ZP_08017066.1| hypothetical protein HMPREF9464_02285 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803642|gb|EFW00592.1| hypothetical protein HMPREF9464_02285 [Sutterella wadsworthensis
           3_1_45B]
          Length = 335

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 100/315 (31%), Gaps = 16/315 (5%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +     N       ++  GS+  L+ E  +  ++      +    ++ L+A     + S 
Sbjct: 8   LAADLANRRELAPFWLVTGSEDLLMLESADLLRRRARELGYTDRQVLELSAS---ADWSQ 64

Query: 70  FWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
             +   S  +F  KK   + + +     K    L E + + +   + +            
Sbjct: 65  LPDAAASIGMFDDKKFLEVRLPSGRPGIKGNKALPEFVERPVDGVVTLFTMPRPDWQGQK 124

Query: 128 RKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
               +       +  C P  +  L   +   +    ++ +++  +     + G+ +A++ 
Sbjct: 125 AAWWQALVKAATVVECDPVERAQLPQWLAGRMRANGQTAARDVLEAFADLVEGNLLAAKQ 184

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E+ KLS        +T + ++  + +      E ++ +           + D   A   P
Sbjct: 185 EVGKLSL-LFPQGELTLEQIEASVGNCSRYTTEALVESFCTASADRTARIVDGLEAQGEP 243

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              LL     + + L K+    E S            K +     N ++ + R      +
Sbjct: 244 LPFLLAILTNQIRSLIKLRASFETSG-------NLYVKGVF--ATNAMKAAARRIPLKRL 294

Query: 307 RETLHKIDHRIHLAR 321
              L        L++
Sbjct: 295 AAALDVCADIDRLSK 309


>gi|319638099|ref|ZP_07992863.1| DNA polymerase III [Neisseria mucosa C102]
 gi|317400744|gb|EFV81401.1| DNA polymerase III [Neisseria mucosa C102]
          Length = 333

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +      E   + +       S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   D L+    +   + + +I   +++K     K         +
Sbjct: 74  DLKLLEIHIPNGKPGKNGGDALQAFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         L   I+  L      I  EA  +    + G+ +A+R E++KL+    + 
Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPKG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
            LI     +  +       + ++  A ++G       L D               +A  +
Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 254 RTLIRLTAALKQGQNIQSLR 273


>gi|188994865|ref|YP_001929117.1| hypothetical protein PGN_1001 [Porphyromonas gingivalis ATCC 33277]
 gi|188594545|dbj|BAG33520.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 335

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 95/267 (35%), Gaps = 16/267 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I EL    + ++       F+ V+L     + +++   NE     +  
Sbjct: 18  PLYLLAGEEPFYIDELATLLETHVVPVDEWDFNRVILYGD--KTSVADIANEARRFPMMG 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV---L 138
           ++++I++        +               ++I    +  K       AEK   V    
Sbjct: 76  RRQLIVVREAQLVDNIDLLEAHYGTFPDTTILVIAYKKKPDKRKAFYTKAEKLGKVFVSE 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197
            I  Y      + D I  +    + ++S E   +L   LG D     NEL KL     + 
Sbjct: 136 TIPDY-----KMPDFILSAAAGKKLTVSPEVAYMLADYLGNDLEKLMNELDKLILITQDS 190

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLHGFL 255
             ++T + V+  I  +      E++ A +  +      +A +F  ++   P  A L    
Sbjct: 191 RGVVTSEIVEQHIGVSKSFNNFELLRAIVNRETGKTFRIAHYFARNEKEHPIQATLPVLF 250

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282
             F  L  +  + +    + + I++  
Sbjct: 251 NYFSNLMIVCYLPQ---KNPDAIMKAL 274


>gi|114778441|ref|ZP_01453286.1| hypothetical protein SPV1_12752 [Mariprofundus ferrooxydans PV-1]
 gi|114551285|gb|EAU53843.1| hypothetical protein SPV1_12752 [Mariprofundus ferrooxydans PV-1]
          Length = 329

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 107/337 (31%), Gaps = 18/337 (5%)

Query: 12  KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71
              + L   H  +  +G D+  + E                 + + ++  E+    +   
Sbjct: 4   NPARLLPAEHSCYYLHGEDQDALVEAAELLLA----DGDPEATRLRVDVTEL----ARIE 55

Query: 72  NEINSTSLFSKK---KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
               +  LF       ++     +  K+    L+        N  +II +  I+    L 
Sbjct: 56  TASRNRGLFGPTYCYALVRNAQSANPKQTEHLLKMSRSVAPGN-RLIICAPGIEWRKALH 114

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K  +  T +        +       + E +      ++ E  Q +   L G R A+R  +
Sbjct: 115 KKMKAETVLPQCEFALPDVAGFTRWLGEEVSRAGLQLAPETVQWMGERLCGMRQAARQLI 174

Query: 189 QKLSSYCLEDILITEQHVK-DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            +L  Y   +  +    V  +++ +     +EE  +A    + +   +        ++  
Sbjct: 175 ARLGCYDGGEGALLGMDVVGELLGERAPGALEEWCHAVAMREPHALSLARRLLAEQQVAE 234

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +L     + Q L      +   + +  +  +     +    RN +   +R W    + 
Sbjct: 235 VQMLSWLGTRMQQLLMYRWYQSQHDRNPLQAAK-----VFGDARNRVGGEVRCWRGAELS 289

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
             + +I     L +     +K+++ + +      A +
Sbjct: 290 AAVRRISDAEKLIKGASLEDKSVVMERLTLDLVGAKR 326


>gi|312795140|ref|YP_004028062.1| DNA polymerase III, delta subunit [Burkholderia rhizoxinica HKI
           454]
 gi|312166915|emb|CBW73918.1| DNA polymerase III, delta subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 385

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 107/297 (36%), Gaps = 15/297 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L  E + + +           ++  +       + S       S SLF 
Sbjct: 18  RLYVVYGDEPLLAQEALARIRAAARAAGFTERNVFSVERGF---DWSLLLGATQSMSLFG 74

Query: 82  KKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-L 138
           ++++I   I      K   D L+ +   +  + + +I    +                 +
Sbjct: 75  ERQLIELRIPTGKPGKDGGDALKALAASDNPDLLTLIALPRLDAATQKTAWFTALVQAGV 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLSS 193
           AI      +  L + I + L   Q+ +      + A Q +   + G+ +A+  E+QKL  
Sbjct: 135 AIRIDTIERAQLPNWIAQRLAAQQQRLVAGDAGRRALQFIAERVEGNLLAAHQEIQKLGL 194

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  +T + V+D + +     + ++  A + G +     + D        +  +L  
Sbjct: 195 -LYPAGELTLEQVQDAVLNVARYDVFKLNEAMLAGDVARLARMLDGLRGEGEATVLVLWA 253

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            +++ + L +I      +      ++++    +   +  ++  +L+  ++  +   L
Sbjct: 254 VVEEIRALARIKRGL-TAGKPLASLMRENR--VWGPRERLMGPALQRVDERSLERAL 307


>gi|225076531|ref|ZP_03719730.1| hypothetical protein NEIFLAOT_01579 [Neisseria flavescens
           NRL30031/H210]
 gi|224952210|gb|EEG33419.1| hypothetical protein NEIFLAOT_01579 [Neisseria flavescens
           NRL30031/H210]
          Length = 333

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +      E   + +       S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVYT---AENNFDWNELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   D L+    +   + + +I   +++K     K         +
Sbjct: 74  DLKLLEIHIPNGKPGKNGGDALQTFAERLPEDTVTLILLPKLEKAQIQSKWFSALAGKGI 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         L   I+  L      I  EA  +    + G+ +A+R E++KL+    + 
Sbjct: 134 VLEAKAVAPHALPQWIQGRLKQQGLDIEPEALALFAERVEGNLLAARQEIEKLALLHPQG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
            LI     +  +       + ++  A ++G       L D               +A  +
Sbjct: 194 HLINIADAEAAVATVARFDVFQLAGAWMKGDALRVSRLLDGLEEEGEEPVLLLWAVAEDI 253

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 254 RTLIRLTAALKQGQNIQGLR 273


>gi|170695379|ref|ZP_02886525.1| DNA polymerase III, delta subunit [Burkholderia graminis C4D1M]
 gi|170139779|gb|EDT07961.1| DNA polymerase III, delta subunit [Burkholderia graminis C4D1M]
          Length = 373

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 103/286 (36%), Gaps = 15/286 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K+  + L+ +      + + +I    +               + +A
Sbjct: 76  RQLVELRIPSGKPGKEGAEALKALAGSVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + + D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPAGSLSFEQIHDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +++ + L +I      +      ++++    +   +  ++  +L  
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSR 297


>gi|90961658|ref|YP_535574.1| DNA polymerase III subunit delta [Lactobacillus salivarius UCC118]
 gi|227890746|ref|ZP_04008551.1| DNA polymerase III subunit delta [Lactobacillus salivarius ATCC
           11741]
 gi|90820852|gb|ABD99491.1| DNA polymerase III, delta subunit [Lactobacillus salivarius UCC118]
 gi|227867684|gb|EEJ75105.1| DNA polymerase III subunit delta [Lactobacillus salivarius ATCC
           11741]
          Length = 340

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 126/328 (38%), Gaps = 22/328 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L    + +   N        F+  + +       I+T   +  S   FS
Sbjct: 17  NVYLVLGEDTYL-NNKVKELFWNYIPESDREFNAAIYDMETTS--IATAIADAISAPFFS 73

Query: 82  KKKIILIEN-----LSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           +K++++I +       T+K  ++     L   +     + ++++ ++  K ++  + + E
Sbjct: 74  EKRLVIITHPYFLTGDTKKHSIEQDVNELIGYLQNPSPDTLLVVLASYDKLDSRKKVVKE 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +    +     N+  +   + +     +  I K A   L+     +     NEL KL 
Sbjct: 134 LKSKAEIVDTSSLNESEIRQYLIKYCDGKKVIIEKRAIDRLIQLTNANFSKIMNELSKLI 193

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
              ++   IT   V  ++  +    + ++++     KI  A  L    L  K     +  
Sbjct: 194 IATVDTKKITVSEVDGLVTKSLEQNVFDLVDFVRDKKIKEAFELYHELLEQKEEPIKINA 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET--- 309
             + +F+LL ++ I+ +  +     I    +  + P +  +  ++ R ++ N ++     
Sbjct: 254 ILIGQFRLLLQVKIL-QKHSYDQGSIASTLK--VHPFRVKLAMQNARKFSNNSLKSAYLG 310

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337
           L +I+ ++  + +   L    +FQ  L 
Sbjct: 311 LAEIEEKLKTSSQNPEL----LFQLFLT 334


>gi|288936547|ref|YP_003440606.1| DNA polymerase III subunit delta [Klebsiella variicola At-22]
 gi|290510397|ref|ZP_06549767.1| DNA polymerase III, delta subunit [Klebsiella sp. 1_1_55]
 gi|288891256|gb|ADC59574.1| DNA polymerase III, delta subunit [Klebsiella variicola At-22]
 gi|289777113|gb|EFD85111.1| DNA polymerase III, delta subunit [Klebsiella sp. 1_1_55]
          Length = 344

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 91/251 (36%), Gaps = 8/251 (3%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLFS ++  ++++        + + L  +I     + ++I++ N++ K         
Sbjct: 70  QALSLFSSRQTLLLILPENGPNAAINEQLATLIGLLHDDLLLIVRGNKLTKAQENAAWLT 129

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 + +SC       L   +       Q  +   A Q+L     G+ +A    L++L
Sbjct: 130 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 189

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +     D  +T   V+  + D         ++A + GK    + +             LL
Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   +R+ + 
Sbjct: 249 RTLQRELLLLVTLK--RQSTHTPLRSLFDKHR--VWQNRRQLLSDALARLSGEQLRQAVT 304

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 305 LLTRAELTFKQ 315


>gi|313158092|gb|EFR57497.1| DNA polymerase III, delta subunit [Alistipes sp. HGB5]
          Length = 356

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 86/245 (35%), Gaps = 10/245 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I  +  +    +       F+ + +   + +       N      +  
Sbjct: 29  PVYLLMGEESYFIDAIAERLATTVLGEAERAFNQITVYGKDSEA--GQVINLCRQMPMMG 86

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++++++  + + + LD L     K     I++I  K     K +   K      +   
Sbjct: 87  SYQVVILKE-AQQLRGLDKLSLYTQKPSPTTILVICHKEKNADKRSAFYKGC--AANGAV 143

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198
           +         +   +++ +     +I  +A  +L  +LG D     NEL KL        
Sbjct: 144 LESVRPRDYEIASWLQQFIAKKGLAIDAKALSMLTDHLGTDISKISNELGKLVVSLPEGT 203

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT+  ++  I  +      E+  A +   +  A+M+A+ F  +    P    +     
Sbjct: 204 KRITDADIEANIGISKDFNNFELCKAVVTRDMARALMIAEHFARNPKDNPLLVTVLALFG 263

Query: 257 KFQLL 261
           +F+ L
Sbjct: 264 QFKEL 268


>gi|206576965|ref|YP_002239705.1| DNA polymerase III, delta subunit [Klebsiella pneumoniae 342]
 gi|206566023|gb|ACI07799.1| DNA polymerase III, delta subunit [Klebsiella pneumoniae 342]
          Length = 344

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 91/251 (36%), Gaps = 8/251 (3%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLFS ++  ++++        + + L  +I     + ++I++ N++ K         
Sbjct: 70  QALSLFSSRQTLLLILPENGPNAAINEQLATLIGLLHDDLLLIVRGNKLTKAQENAAWLT 129

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 + +SC       L   +       Q  +   A Q+L     G+ +A    L++L
Sbjct: 130 TLAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDNAASQLLCYCYEGNLLALAQALERL 189

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +     D  +T   V+  + D         ++A + GK    + +             LL
Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   +R+ + 
Sbjct: 249 RTLQRELLLLVTLK--RQSTHTPLRSLFDKHR--VWQNRRQLLSDALARLSGEQLRQAVT 304

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 305 LLTRAELTFKQ 315


>gi|297570439|ref|YP_003691783.1| DNA polymerase III delta [Desulfurivibrio alkaliphilus AHT2]
 gi|296926354|gb|ADH87164.1| DNA polymerase III delta [Desulfurivibrio alkaliphilus AHT2]
          Length = 478

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            +    L +LI E+L    K I  +A ++LL  +G   +A   E +KL+ Y  E   I  
Sbjct: 239 KEQAALLKNLIHETLAGFNKKIRPDALELLLERVGFHPVAVVMEAEKLALYLDEQETIGR 298

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           + V +++  T    I E+  A   G++  +I + +      M   A+L G     + L  
Sbjct: 299 REVAELVGRTREEAIFELSEAFTGGRLEKSISILERLQQGGMHPLAILGGLRNHVRKLLL 358

Query: 264 IHIIKECSNISFEKIIQ--KTEKNIIPMKRNILQES 297
              +++ +    +  +     +KN +P  +   +E 
Sbjct: 359 ARAVQDQAGRPCDSSLAYPAFQKNYLPQVKKAWEEQ 394


>gi|256850963|ref|ZP_05556352.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661177|ref|ZP_05862091.1| DNA polymerase III, delta subunit [Lactobacillus jensenii
           115-3-CHN]
 gi|282934122|ref|ZP_06339400.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1]
 gi|256616025|gb|EEU21213.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548114|gb|EEX24090.1| DNA polymerase III, delta subunit [Lactobacillus jensenii
           115-3-CHN]
 gi|281301736|gb|EFA94002.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1]
          Length = 328

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 125/317 (39%), Gaps = 29/317 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN  + +   + YG D  L   LI  +  +        F+ + L  ++ + + +      
Sbjct: 7   KNSNVQNKNLLIYGEDAFLNDYLIRDYLASS------DFAGLDLQRVDCENDGLGELLAS 60

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122
           +   SLFS++KII I+N       + KK+   +E++       N+ + I+II++N   + 
Sbjct: 61  LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDIVIIQANYANLD 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K   + K++    + +A+   P     +  +I+  +     SIS+    +LL        
Sbjct: 121 KRKKITKLSLSAFNSVAVQFKPYE---ISGIIKAIIKDEGYSISQSTLHLLLERSDQVMD 177

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              +   KL     ++  IT + V++ +  +    I EI+++  +     AI   +  L 
Sbjct: 178 TVLSNYLKLKLIADDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLR 237

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  +L  F  + +++    I+      S   + ++    I P +  + ++      
Sbjct: 238 EGQNPVRILAVFENQLEVILSAKILL-ARRRSEMDVGKELG--IHPYRVKLARQ-----T 289

Query: 303 KNLVRETLHKIDHRIHL 319
           +  + +    +   I L
Sbjct: 290 QASIPKIKKLLLEAIKL 306


>gi|256425476|ref|YP_003126129.1| DNA polymerase III, delta subunit [Chitinophaga pinensis DSM 2588]
 gi|256040384|gb|ACU63928.1| DNA polymerase III, delta subunit [Chitinophaga pinensis DSM 2588]
          Length = 331

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 120/303 (39%), Gaps = 13/303 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I ++ N  + ++       F+L VL   +   + ST  N      +F
Sbjct: 16  RPLYWLEGEEDFFIDQVSNYAEHHLLDEAERGFNLTVLYGKDT--DWSTVINACRRYPMF 73

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           +++++++++   + K +L  LE  +   + + + ++  K  +I   + + K+ ++   +L
Sbjct: 74  AERQVVVLKEAQSMKDILK-LEAYVDNPLSSTVFVVAHKQGKIDGRSKMAKLIKEKGVLL 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           +     DN+  L   ++  +    ++IS++A  +L+ ++G D     NE++KL      D
Sbjct: 133 STKKMYDNQ--LPAWVDAFVSSLGRAISQKAGILLVDHIGNDLSRMANEIEKLLVNLAPD 190

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQK 257
             I E  ++  +  +    + E+ NA  Q  I   + +  +F A+ K     ++   L  
Sbjct: 191 KKIDENDIEKYVGISKEYNVFELQNALGQKDISKVMRIIGYFAANPKAGPIQMVLPALYN 250

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F     +    +         I      + P        + R +      + +  +    
Sbjct: 251 FFSKMSMVFGVKGGEKEIAAAI-----GVHPFFVKDYVNAARQYGLEGTEKAILLLHAYN 305

Query: 318 HLA 320
             +
Sbjct: 306 LRS 308


>gi|325498181|gb|EGC96040.1| DNA polymerase III subunit delta [Escherichia fergusonii ECD227]
          Length = 343

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R+++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRSMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQAQLRQAVQLLTRTEITLKQ 314


>gi|330006016|ref|ZP_08305459.1| DNA polymerase III, delta subunit [Klebsiella sp. MS 92-3]
 gi|328536008|gb|EGF62418.1| DNA polymerase III, delta subunit [Klebsiella sp. MS 92-3]
          Length = 326

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 91/257 (35%), Gaps = 20/257 (7%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLF+ ++  ++++        + + L  ++     + ++I+      + N L K  E
Sbjct: 52  QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIV------RGNKLTKAQE 105

Query: 133 KF-------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
                       + +SC       L   +       Q  +   A Q+L     G+ +A  
Sbjct: 106 NAVWLTALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALA 165

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             L++L+     D  +T   V+  + D         ++A + GK    + +         
Sbjct: 166 QALERLAL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGC 224

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               LL    ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   
Sbjct: 225 EPAILLRTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQ 280

Query: 306 VRETLHKIDHRIHLARK 322
           +R+ +  +       ++
Sbjct: 281 LRQAVTLLTRAELTFKQ 297


>gi|262374206|ref|ZP_06067482.1| DNA polymerase III, delta subunit [Acinetobacter junii SH205]
 gi|262310764|gb|EEY91852.1| DNA polymerase III, delta subunit [Acinetobacter junii SH205]
          Length = 331

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K               +   +  +    +N +
Sbjct: 10  KRVNEARGAWIIHGQEPLLEQNLLDTFRKAWQQQ---EVERQRYDISSVN-DWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIHHNEHNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+ + + YP ++  ++ +  + L      ++ +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVPLTATYPQDRQRILSIEADKL---GIQLNNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            +++    +   I  + +   + D       ++ +A + G +  ++ +  + LA+  P  
Sbjct: 181 MRVADTFPDIKQIQIEQLYACLQDQSRYTTYDLSDALLTGNLAQSVKIYQYLLAAGEPDS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N     +
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPQNALQLGIWKTKVSLYQQALRRLNPRQFLK 290

Query: 309 ---TLHKIDHRIH 318
               L  ID  I 
Sbjct: 291 WPELLLAIDAAIK 303


>gi|118443890|ref|YP_878575.1| DNA polymerase III subunit delta [Clostridium novyi NT]
 gi|118134346|gb|ABK61390.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 340

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 108/280 (38%), Gaps = 23/280 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+IF GSD+  I + I++    +        + V L+ + +  +  +  N   +    S
Sbjct: 18  NVYIFCGSDEQSIKKAIDKIVDKVVNKDFKELNYVQLDGMTVDND--SIINACETLPFMS 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL--RKIAEKFTSVL- 138
           +K++ LI   +  K  +D   + + KN+  +   I+  +I K++ L    I E       
Sbjct: 76  EKRVTLIYRANFLKDKVDKSMDKVFKNLTKY---IE--DIPKDSILIMYYIFENDREKES 130

Query: 139 -----------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
                       +       + L   + E      K+ISK    +    +  +     NE
Sbjct: 131 LKLKKLDKKAEVVKFSKLKGMALQRKVGEVFKRKNKAISKSDLALFCNIVENNMDIIENE 190

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  Y  +  ++T + +  +I   +   I  +++   Q K   ++ + +  +      
Sbjct: 191 VEKLCCYVDDRDIVT-EDITKLISGKNDNDIFNLVDFVSQRKPQKSLDILNELVFKGESV 249

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
             +L    ++F+L+  I I  +    + + I ++   +  
Sbjct: 250 TGILRMIQRQFKLIFDIKINMD-KGKNKDDIARELRLHPF 288


>gi|169350128|ref|ZP_02867066.1| hypothetical protein CLOSPI_00870 [Clostridium spiroforme DSM 1552]
 gi|169293341|gb|EDS75474.1| hypothetical protein CLOSPI_00870 [Clostridium spiroforme DSM 1552]
          Length = 338

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 134/337 (39%), Gaps = 29/337 (8%)

Query: 1   MATIESHKFIQKSTKNLF-LSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVL 58
           M  I  H F QK   N   +   + + YG +  L+ + +   KK+ +    +  FS+   
Sbjct: 1   MTIIFIHDFRQKVGYNDDGVMEMIIVIYGEESFLMNQKLESLKKDFACNEENMNFSIYRG 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLS--------TEKKVLDCLEEIIIKNIC 110
           +   I+      + ++ +   F+ KK+++++            +   L   E+ +  N  
Sbjct: 61  DEDSIEA----VYEDLITPPFFTDKKMVVLKKADFLTTKKIKKDDMALSFFEKCLDNNND 116

Query: 111 NHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI-HLMDLIEESLLIGQKSISK 167
           + I ++  + N+  +   L K   K         Y       L D + +++   Q +I +
Sbjct: 117 DVIFVLYHEGNDFDERKKLVKRLRKEAKFFE---YEKINHYKLSDNVRQAIKRRQATIDE 173

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
           +A ++LL+ +G        E++KL  Y   D  IT + V  ++       +  + +A +Q
Sbjct: 174 DALELLLSRVGDSLSTVVLEVEKLCLY---DKHITIEGVDKLVSKPLDENVFSLTSAILQ 230

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
                   +    +        L+     + +L+ ++ ++ +    + ++I +     I 
Sbjct: 231 KDRQKIFSIYKDLMVLNEEPVKLIVLIAGQLRLMYQVKLL-DRKGYNDKEIGKIL--AIN 287

Query: 288 PMKRNILQESLRIWNKNLVRETLH---KIDHRIHLAR 321
           P +   +++  + ++ + + + L+   K+D  I   +
Sbjct: 288 PYRLKYIRQEGKDFDLDELLKRLNDLAKLDEAIKTGK 324


>gi|317505372|ref|ZP_07963299.1| DNA polymerase III subunit delta [Prevotella salivae DSM 15606]
 gi|315663514|gb|EFV03254.1| DNA polymerase III subunit delta [Prevotella salivae DSM 15606]
          Length = 344

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 108/280 (38%), Gaps = 20/280 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +E+ +F             ++I  G +   I ++ +    ++       F+  ++  
Sbjct: 15  MRDLEARRF-----------SPIYILMGEESYYIDKISDYIATHVLKPEERDFNQNIVFG 63

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            ++    S   +   +  + ++K++++++     K   + LE+     + + I+++  K+
Sbjct: 64  ADVTA--SQIVDSAKAYPMMAEKRVVIVKESQNLKG-TEALEKYFKNPVASTILVLCHKN 120

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             I K   +   A+     +        +  L   IE  L   Q +I  +A Q++  ++G
Sbjct: 121 GSIDKRKKIIPSAQ-AGGGVIFESKKLYERELPGFIETYLRQHQVTIEPKAAQMIADHVG 179

Query: 179 GDRIASRNELQKLSSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     +EL KL    L  +  +T + V+  I  +      E+ NA I   IY A ++ 
Sbjct: 180 ADLNRLTSELDKLLLSRLTTNGRVTPEVVEKEIGVSKDFNAFELRNAIIYRDIYKANLII 239

Query: 238 DFFLASKMPS--HALLHGFLQKFQLLEKIHIIKECSNISF 275
            +F  +       + L      F+ L   +     +N + 
Sbjct: 240 KYFDNNPKAGSLFSFLPMIFTYFENLMIAYYAPNRNNENA 279


>gi|193214172|ref|YP_001995371.1| DNA polymerase III subunit delta [Chloroherpeton thalassium ATCC
           35110]
 gi|193087649|gb|ACF12924.1| DNA polymerase III, delta subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 352

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 25/263 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE---INSTS 78
            ++ F+G +  LI EL+   K     +  D      LN   +     T  +     +   
Sbjct: 21  PIYFFFGREDFLIEELVRIIKAEAFHSAED----SNLNFTLLYGEEQTLGDVVSVASEYP 76

Query: 79  LFSKKKIILI---------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
           +FS+++++++          +   +K       E +   + + I+++ + ++ K  TL K
Sbjct: 77  MFSERRLVVVKSFDKLKKDRSREKQKAQTALFTEYLKNPLPSTILVLTTGKLDK-ATLSK 135

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             E F  + + S   D         EE       ++S +A +IL+   G        E+Q
Sbjct: 136 --EPFPLLQSFSYEFDQIQDAGRFAEERAKRYGWTLSPQAIKILVTFAGNSARELDAEIQ 193

Query: 190 KLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA---S 243
           KLS +      + ++T+  V   +  +    + E+  A + G +  A  +A   L     
Sbjct: 194 KLSLFADGKSGEKILTDAEVLQTVGLSREYNVFELDKAIVAGDLRMASGIALMILEHEGE 253

Query: 244 KMPSHALLHGFLQKFQLLEKIHI 266
           K    A+L+  +  F  L K+ +
Sbjct: 254 KTGLFAILNYLIMFFTRLWKLKM 276


>gi|34540701|ref|NP_905180.1| hypothetical protein PG0949 [Porphyromonas gingivalis W83]
 gi|34397015|gb|AAQ66079.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 335

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 13/246 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I EL    + ++       F+ V+L     + +++   NE     +  
Sbjct: 18  PLYLLAGEEPFYIDELATLLETHVVPVDEWDFNRVILYGD--KTSVADIANEARRFPMMG 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV---L 138
           ++++I++        +               ++I    +  K       AEKF  V    
Sbjct: 76  RRQLIVVREAQLVDNIDLLEAHYGTFPDTTILVIAYKKKPDKRKAFYTKAEKFGKVFVSE 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197
            I  Y      + D I  +    + S+S E   +L   LG D     NEL KL     + 
Sbjct: 136 TIPDY-----KMPDFILSAAAGKKLSVSPEVAYMLADYLGNDLEKLMNELDKLILITQDS 190

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLHGFL 255
             ++T + V+  I  +      E++ A +  +      +A +F  ++   P  A L    
Sbjct: 191 RGVVTSEIVEQHIGVSKSFNNFELLRAIVNRETGKTFRIAHYFARNEKEHPIQATLPVLF 250

Query: 256 QKFQLL 261
             F  L
Sbjct: 251 NYFSNL 256


>gi|260774877|ref|ZP_05883778.1| DNA polymerase III delta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609132|gb|EEX35290.1| DNA polymerase III delta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 337

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 120/321 (37%), Gaps = 14/321 (4%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           I + + +++  K L   H  ++ +G++  L+ E     +K         F      A++ 
Sbjct: 3   IFADRLVEQLNKQL---HPTYLIFGNEPLLLQESRQSIQKAAYTQG---FEERHRFAVDN 56

Query: 64  QKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121
             + +  ++   + SLFS +++I +E         +   L  I      + I+++   ++
Sbjct: 57  SFDWNLVYDSCQALSLFSSRQLIELELPESGVNAAIAKELVGISEVLHSDIILVVIGTKL 116

Query: 122 KKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K     K  +   +    ++C   +   L   ++        +   EA Q+L     G+
Sbjct: 117 TKAQENAKWFKALSSRGCWVNCLTPDLSRLPQFVQSRCRALNLNPDAEAIQMLAQWHEGN 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A    L+KL+     D  +    +++ +   +        +A + GK   A  +    
Sbjct: 177 LFALTQSLEKLAL-LYPDGQLNLIRLEESLSRHNHFTAFHWSDALLAGKANRAQRVLRQL 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            A  + +  LL    ++   L    + ++  + +  ++ ++    I   KR +   +L  
Sbjct: 236 EAEGVEAVILLRTIQKELTQLLS--MQQQMQSQAIGQVFERYR--IWQSKRPLYSAALNR 291

Query: 301 WNKNLVRETLHKIDHRIHLAR 321
            ++  + + +  I     +++
Sbjct: 292 LSQTKITQLIQLIAKAEVISK 312


>gi|168205851|ref|ZP_02631856.1| DNA polymerase III, delta subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170662628|gb|EDT15311.1| DNA polymerase III, delta subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 348

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S K
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|110799726|ref|YP_696723.1| DNA polymerase III subunit delta [Clostridium perfringens ATCC
           13124]
 gi|110674373|gb|ABG83360.1| DNA polymerase III, delta subunit [Clostridium perfringens ATCC
           13124]
          Length = 348

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S +
Sbjct: 20  YILVGLDELLIKEGIENIIYNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDR 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|262041268|ref|ZP_06014479.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041384|gb|EEW42444.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 344

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 8/251 (3%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLF+ ++  ++++        + + L  ++     + ++I++ N++ K         
Sbjct: 70  QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIVRGNKLTKAQENAAWLT 129

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 + +SC       L   +       Q  +   A Q+L     G+ +A    L++L
Sbjct: 130 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 189

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +     D  +T   V+  + D         ++A + GK    + +             LL
Sbjct: 190 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 248

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   +R+ + 
Sbjct: 249 RTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQLRQAVT 304

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 305 LLTRAELTFKQ 315


>gi|255009389|ref|ZP_05281515.1| hypothetical protein Bfra3_09632 [Bacteroides fragilis 3_1_12]
 gi|313147146|ref|ZP_07809339.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135913|gb|EFR53273.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 339

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLTDTEKEFNLTVVYGADV--DVATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L    EK    +
Sbjct: 79  SEHQVVIVKEAQAIRNI-EELSYYLQKPLNSTILVICHKHGTLDRRKKLAAEVEKA--GV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                   +  L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGIDMEPKATAMLADFVGTDLSRLTGELEKLIITLPSG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +   +       R+ L  ++R ++     + + +I + 
Sbjct: 256 NFYSNLMLAYYAPDKSEQGVATMLGLKTP--WQARDYLA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++      +   +I+ + +  I
Sbjct: 313 DAKSKGVGNGSISDGDILRELVFKI 337


>gi|18311025|ref|NP_562959.1| DNA polymerase III subunit delta [Clostridium perfringens str. 13]
 gi|18145707|dbj|BAB81749.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 348

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S K
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCIEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|167855808|ref|ZP_02478561.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755]
 gi|167853087|gb|EDS24348.1| DNA polymerase III subunit delta [Haemophilus parasuis 29755]
          Length = 340

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 117/319 (36%), Gaps = 31/319 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVVLNALEIQKNISTFWNEINSTS 78
             ++  G D  L+ E  +   +   +   D    F++      ++       ++ + S  
Sbjct: 19  PFYLLTGQDLLLVGEAKDCIVQTARLQDFDEKQEFTIANDTQWDM------LFDLVQSNG 72

Query: 79  LFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LF  ++I+++             L E++  +  + + ++   ++ K    +    +  + 
Sbjct: 73  LFFNRQILILNLPENLTVTQQKQLSELLAFSHTDLLFVLHQPKLTKAMEKQSWFVQLNNA 132

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + ++C   +   L   ++      Q  +  +A Q+L  +  G+ +A +  LQ L     E
Sbjct: 133 VVVNCQTPDITKLPIWLQHRAKTMQLQLEPDAIQLLCYSYEGNLLALKQALQMLQLRFAE 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I    VK++I  +      + ++A ++GKI  A+ +       ++    LL    ++
Sbjct: 193 QK-IGLNRVKEVIEQSAQFTPFQWVDALLEGKINRALRVLQHLQNEEIQPVVLLRIVQKE 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEK-------------NIIPMKRNILQESLRIWNKN 304
             LL ++         S + II   +               +   +R   Q +++    +
Sbjct: 252 LLLLLEM-------TRSPQPIINSHQPLYSGNLRAEFDRLKVWQNRRGFYQAAVQRLTYH 304

Query: 305 LVRETLHKIDHRIHLARKK 323
            + + +  +       +++
Sbjct: 305 KLYQLIQSLAELEKQVKQE 323


>gi|152969243|ref|YP_001334352.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954092|gb|ABR76122.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 344

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 92/257 (35%), Gaps = 20/257 (7%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLF+ ++  ++++        + + L  ++     + ++I+      + N L K  E
Sbjct: 70  QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIV------RGNKLSKAQE 123

Query: 133 KFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
               + A++       C       L   +       Q  +   A Q+L     G+ +A  
Sbjct: 124 NAAWLTALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALA 183

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             L++L+     D  +T   V+  + D         ++A + GK    + +         
Sbjct: 184 QALERLAL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGC 242

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               LL    ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   
Sbjct: 243 EPAILLRTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQ 298

Query: 306 VRETLHKIDHRIHLARK 322
           +R+ +  +       ++
Sbjct: 299 LRQAVTLLTRAELTFKQ 315


>gi|332097734|gb|EGJ02708.1| DNA polymerase III, delta subunit [Shigella boydii 3594-74]
          Length = 340

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 98/272 (36%), Gaps = 20/272 (7%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I+ 
Sbjct: 51  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIV- 109

Query: 118 SNEIKKNNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                + N L K  E      A++       C    +  L   +          +   A 
Sbjct: 110 -----RGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 164

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A + GK 
Sbjct: 165 QVLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKS 223

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
              + +             LL    ++  LL  +   ++ ++     +  K    +   +
Sbjct: 224 KRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNR 279

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           R ++ E+L   ++  +R+ +  +       ++
Sbjct: 280 RGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ 311


>gi|238893707|ref|YP_002918441.1| DNA polymerase III subunit delta [Klebsiella pneumoniae NTUH-K2044]
 gi|238546023|dbj|BAH62374.1| DNA polymerase III subunit delta [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 343

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 8/251 (3%)

Query: 75  NSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            + SLF+ ++  ++++        + + L  ++     + ++I++ N++ K         
Sbjct: 69  QAMSLFASRQTLLLILPENGPNAAINEQLATLVGLLHDDLLLIVRGNKLTKAQENAAWLT 128

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 + +SC       L   +       Q  +   A Q+L     G+ +A    L++L
Sbjct: 129 ALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERL 188

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +     D  +T   V+  + D         ++A + GK    + +             LL
Sbjct: 189 AL-LWPDGKLTLPRVEQAVNDAAHFTPYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILL 247

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ ++     +  K    +   +R +L ++L   +   +R+ + 
Sbjct: 248 RTLQRELLLLVTLK--RQATHTPLRSLFDKHR--VWQNRRQLLSDALTRLSGEQLRQAVT 303

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 304 LLTRAELTFKQ 314


>gi|182623920|ref|ZP_02951708.1| DNA polymerase III, delta subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910813|gb|EDT73167.1| DNA polymerase III, delta subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 348

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 99/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S K
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   + +      K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGKIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|270296705|ref|ZP_06202904.1| DNA polymerase III, delta subunit [Bacteroides sp. D20]
 gi|270272692|gb|EFA18555.1| DNA polymerase III, delta subunit [Bacteroides sp. D20]
          Length = 339

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 114/326 (34%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEESYYIDLISDYIVDNVLTDTEKEFNLTVVYGADV--DIATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S++++++++     + + + L   + K + + I+++  K   + +   L   AE     +
Sbjct: 79  SERQVVVVKEAQAIRNM-EELSYYLQKPLNSTILVLCHKHGVLDRRKKL--AAEIEKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              +T + ++  I  +      E+ +A ++  I  A  +  +F  +    P    L    
Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E +       I           R  L  ++R ++     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNSSLSDGDILRELVFKI 337


>gi|189465642|ref|ZP_03014427.1| hypothetical protein BACINT_02002 [Bacteroides intestinalis DSM
           17393]
 gi|189437916|gb|EDV06901.1| hypothetical protein BACINT_02002 [Bacteroides intestinalis DSM
           17393]
          Length = 339

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    NI       F+L V+   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEEPYYIDLISDYITDNILTETEKEFNLTVVYGADV--DIATVVNAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                      L   I   +      +  +A  +L   +G D      EL+KL    L  
Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGIDVEPKATAMLADFVGTDLSRLTGELEKLII-TLPK 194

Query: 199 I--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL 255
               +T + ++  I  +      E+ +A ++  +  A  +  +F  + K     +    L
Sbjct: 195 GHTRVTPEQIEKNIGISKDYNNFELRSALVEKDVLKANKIIKYFEENPKTNPIQMTLSLL 254

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F     +       +      +           ++ L  ++R +N     + + +I +
Sbjct: 255 FGFFSNLMLAYYAPEKSEQGIANMLGLRTP--WQAKDYLA-AMRRYNGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNPSLSDGDILRELVFKI 337


>gi|188585801|ref|YP_001917346.1| DNA polymerase III, delta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350488|gb|ACB84758.1| DNA polymerase III, delta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 334

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 123/323 (38%), Gaps = 23/323 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G       +   + K  +  T  D  S   L+  E   N++    +  S   FS 
Sbjct: 17  VYLITGESYFQ-KQFGQKIKDLLLKTDFDLSSYEKLDGKEY--NLADVVQKAESLPFFSD 73

Query: 83  KKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           ++++++ N         +K      + +       +++  ++++ K   L K  +K   +
Sbjct: 74  RRLVMVSNAPYFSEQLSEKEKQIFSDYLDNPAPTTVLVFFADKVDKRQKLVKNLKKRGML 133

Query: 138 LAISCYPDNKI---HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                Y  +++    +   I E + +  K I + A  +L+  +G +      EL+KL  Y
Sbjct: 134 -----YEFSQLKPWEIDKWIREWVNMRGKDIQRNAVSLLVQRIGNELPLLEQELEKLDLY 188

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 I E HV+ ++ ++    + ++++   + +   A+ L         P   +L   
Sbjct: 189 TAGIKKIEENHVRQVVPESLETNVFKLVDKIGEKQSGIALALVRKLTL-NEPPVKILFLI 247

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            ++F+LL KI    +   ++  +  +K      I  K     ++          + + +I
Sbjct: 248 ARQFRLLIKIKAYLD-DGLAVSEASKKLGIPPFIGKKVAAQSKNFSYQELQDAVKEVQRI 306

Query: 314 DHRIHLARKKKYLEKNIIFQTIL 336
           D+ I    K   LE     + ++
Sbjct: 307 DYAI----KTGQLEGTFALERLI 325


>gi|296876838|ref|ZP_06900886.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432340|gb|EFH18139.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 108/307 (35%), Gaps = 29/307 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G    L       I     D     F +   +  E++ +       + S 
Sbjct: 17  PILVLTGEDVGQFEWLKKDILNKIGYDPSDLNYSYFDMKEASYDEVELD-------LVSL 69

Query: 78  SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +KI+++++L     + ++ + D      E  +     +  ++I +  ++     L
Sbjct: 70  PFFADEKIVILDHLLDVTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   +  I      +  +                 ++   LL   G D    +  
Sbjct: 130 VKLLKRDAQI--IEATTPKEQEVKRYFASQAQELGLQFEGDSLDQLLLKSGYDFGELQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +  L +Y  ED  IT + +++++  +    I ++    ++ +I  A  L           
Sbjct: 188 IALLQAYK-EDGQITLEDIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ I  E    S  +I+        + + P +        R  + 
Sbjct: 247 IKLIAILLGQFRMFSQVKIFSE-EGQSESQIVASLSELSGRKVNPYQVKFALRDSRRLSL 305

Query: 304 NLVRETL 310
           + +++ +
Sbjct: 306 SFLKQAM 312


>gi|289209290|ref|YP_003461356.1| DNA polymerase III subunit delta [Thioalkalivibrio sp. K90mix]
 gi|288944921|gb|ADC72620.1| DNA polymerase III, delta subunit [Thioalkalivibrio sp. K90mix]
          Length = 358

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 106/290 (36%), Gaps = 14/290 (4%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
            +  Q + + F + I   SLF+++ ++   +      K   D L+    +   + +++++
Sbjct: 66  DMTAQSDWAPFESAIRDRSLFAERSVLDLRLATGKPGKVGGDHLKTYAAEPQDDLVLLVQ 125

Query: 118 SNEIKKNNTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
                ++       +   +  + +   P     L   +   L     +I++ A  +L++ 
Sbjct: 126 LPRPDRDMRRAAWFKALENRAVVLHARPIPPSQLGPWVRARLQRHGLTITEPALALLVSR 185

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           + G+ +A+R E++KL+        I E  + +   D     +  +    ++G   +A+ +
Sbjct: 186 IEGNLLAARQEIEKLAL--AGVTEIDEAVLAEATTDAARFELFALAPTALRGDARHALRM 243

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  L    P   +L    ++ +LL +    K       E              +  L++
Sbjct: 244 LEGLLDEGQPEPLILWALARECRLLVQAMERKAAGAPDREAFQGSFGDG-----QKALRQ 298

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI-AQTACKN 345
           ++   +          +     + R  K  E     Q +L + A+ A + 
Sbjct: 299 AMSRLSLPA---ARGLLGEAARVDRVIKGQENGNARQGLLDLVARMAGRR 345


>gi|307261359|ref|ZP_07543034.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869090|gb|EFN00892.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 303

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 15/265 (5%)

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124
            +    S  LF  ++II++    +     +  + E+   +  + ++I+     S  ++K 
Sbjct: 26  LFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQ 85

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
               +I       + I+C       L   I       +  I  EA Q+L  +  G+ +A 
Sbjct: 86  AWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLAL 142

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +  LQ L      D  I+    K+++  +      + I+A ++GKI  A  +       +
Sbjct: 143 KQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEE 201

Query: 245 MPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESL 298
           +    LL    ++   LLE     +   N +    +           +   +R   Q ++
Sbjct: 202 VQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAV 261

Query: 299 RIWNKNLVRETLHKIDHRIHLARKK 323
           +      + + + ++       +++
Sbjct: 262 QRLTYKKLYQLIQRLAELEKQVKQE 286


>gi|228473123|ref|ZP_04057880.1| DNA polymerase III, delta subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275705|gb|EEK14482.1| DNA polymerase III, delta subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 333

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 107/304 (35%), Gaps = 14/304 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + N  ++ +       F+  ++   +I  +  T  +      + +
Sbjct: 18  PIYYLAGEEPFFIDLISNYIEQEVLREDEKAFNQQIVYGKDISVD--TIIHYAREYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +++I+++      + +  L   +       I+++  K  +I     L K  +K+  + +
Sbjct: 76  ARRVIIVKEAQDLSRTISQLLPYVENPSQTTILVLCYKYGKIDGKTKLAKELKKYVCLES 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
              Y       +  ++  L     SI   A Q+L+  LG D     NEL KL     +  
Sbjct: 136 KKLYESET---LKWVDSYLKGFGYSIEPVAAQLLINFLGTDLSRIANELNKLKIILPKGT 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALL-HGFLQK 257
            IT  H++  I  +    + E+ NA  +     A+ +  +F  + K    A++     + 
Sbjct: 193 KITPLHIEQNIGISKDFNVFELQNALGKKDFAKAMQIIKYFNENQKDNPIAMITENLYRY 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F+ L               +++               +++   +    +   +  + +  
Sbjct: 253 FKNLFIFATNTSKGENELARMMG--VNPYFLKD---YRQAAANYPLKKISFCMETVKNAD 307

Query: 318 HLAR 321
             ++
Sbjct: 308 LKSK 311


>gi|159029369|emb|CAO90745.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 327

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 114/310 (36%), Gaps = 19/310 (6%)

Query: 25  IFY-GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS-K 82
           IFY G D+  I + +   +  +       F+   +N    +  I      +    +F   
Sbjct: 4   IFYWGEDEFAINQAVKNLQAKLLDPNWIQFNYDKINGDRNEAIIEALNQAMT--PVFGMG 61

Query: 83  KKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFTS 136
            +++ + +        + +   L+  +     N  +++ S + K ++ L+  K  +    
Sbjct: 62  NRLVWLADTVICQQCSEDIFKELQRTLPNLSENSYLLLTSAK-KPDSRLKSSKFIQNQAE 120

Query: 137 V---LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           V     I  +   +  +   + E        ++ +A ++L  ++G +      EL+KL  
Sbjct: 121 VKEFELIPPWKVEE--IAQRVREIAKEVGVKLTPDAIELLAESVGNNSRLLWMELEKLRL 178

Query: 194 YCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +       I ++ +  ++ +       ++ +A ++ +   A+ L +  L       A+  
Sbjct: 179 FKNNSAGTIDKKDILSLV-NASNQSSLQLASAILKRETGKALELVNELLNRNENPLAITA 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +F+    + +  E      EK I    +   P +   +++ ++ ++   +  TL  
Sbjct: 238 TLGGQFRTWAIVKLKIEEGEKD-EKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLATLPI 296

Query: 313 IDHRIHLARK 322
           +    +  ++
Sbjct: 297 LLELEYRLKR 306


>gi|188588435|ref|YP_001920244.1| DNA polymerase III subunit delta [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498716|gb|ACD51852.1| DNA polymerase III, delta subunit [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 113/329 (34%), Gaps = 28/329 (8%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D+ LI + I+   K       D  +L+ ++ ++   +     N   +  + S K
Sbjct: 20  YIFCGLDEELIKDSIDSILKKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA------EK---- 133
           K++++   +  K   D     I K+     I+  ++++     L          EK    
Sbjct: 78  KVVIVYRANFLKDKSDEASNKIYKS-----ILKYASDMPPYTILVMYYLFNDKREKPNKN 132

Query: 134 ------FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
                    +  + C    +   +  I +   + +K+I +         +  +    + E
Sbjct: 133 KRLNSLDKLIPVVHCDKLRRDSYIKKINDLFKLNKKNIGRIEVMYFAEKVQNNFDIIKRE 192

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + KL SY      IT++ +  +I  +    + +++    Q KI  A+ +    L      
Sbjct: 193 IDKLISYTNG-REITKKDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQH 251

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             ++    + F  L  I              + + +      ++  L      + +  + 
Sbjct: 252 MLIISNIQRHFIKLYDIKTGL-RQGKKISTFMSELKLPQFVCEK--LAAQSSKFTEKQLS 308

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
             L K+        K   L+K +  + +L
Sbjct: 309 -ELVKLCVNTENNLKSSGLDKTMEMELLL 336


>gi|307250114|ref|ZP_07532076.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857845|gb|EFM89939.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 303

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 15/267 (5%)

Query: 68  STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIK 122
              +    S  LF  ++II++    +     +  + E+   +  + ++I+     S  ++
Sbjct: 24  EALFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAME 83

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K     +I       + I+C       L   I       +  I  EA Q+L  +  G+ +
Sbjct: 84  KQAWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLL 140

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A +  LQ L      D  I+    K+++  +      + I+A ++GKI  A  +      
Sbjct: 141 ALKQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQN 199

Query: 243 SKMPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQE 296
            ++    LL    ++   LLE     +   N +    +           +   +R   Q 
Sbjct: 200 EEVQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQA 259

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323
           +++      + + + ++       +++
Sbjct: 260 AVQRLTYKKLYQLIQRLAELEKQVKQE 286


>gi|168208745|ref|ZP_02634370.1| DNA polymerase III, delta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215670|ref|ZP_02641295.1| DNA polymerase III, delta subunit [Clostridium perfringens NCTC
           8239]
 gi|170713062|gb|EDT25244.1| DNA polymerase III, delta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|182382134|gb|EDT79613.1| DNA polymerase III, delta subunit [Clostridium perfringens NCTC
           8239]
          Length = 348

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 98/257 (38%), Gaps = 20/257 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I  G D+ LI E I     N+        +L+ L+   +  +   F N   +    S K
Sbjct: 20  YILVGLDELLIKEGIENIIDNVLDEGFKDLNLIRLDGNNLNFD--DFMNACETLPFMSDK 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIK-------NICNHIIIIKSNEIK-------KNNTLRK 129
           K++++   +  +   D   E + K       N   H ++I    +K       + + L+K
Sbjct: 78  KVVVLNRTNIFRDKQDKETEKLYKQCVEYFQNTPEHCVLIAYTTLKDKRDRVNRLSKLKK 137

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + EK + ++++         L   +        K+I K   +    ++  +      E+ 
Sbjct: 138 L-EKSSCIVSVEKLK--GAKLQQKVGRIFQRYNKNIGKIELKYFCDSVENNFDVIEREVD 194

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K+ +Y   +  IT + +  ++   +   I +++      +   AI L D  +        
Sbjct: 195 KIVNYV-GEREITRKDIDLLLPPRYEDDIFDLVELISIKRAKQAIDLMDELIGRGQDPIF 253

Query: 250 LLHGFLQKFQLLEKIHI 266
           +L    ++FQ L ++ I
Sbjct: 254 ILSQIREQFQKLHRVKI 270


>gi|167040714|ref|YP_001663699.1| DNA polymerase III subunit delta [Thermoanaerobacter sp. X514]
 gi|300914754|ref|ZP_07132070.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X561]
 gi|307724012|ref|YP_003903763.1| DNA polymerase III subunit delta [Thermoanaerobacter sp. X513]
 gi|166854954|gb|ABY93363.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X514]
 gi|300889689|gb|EFK84835.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X561]
 gi|307581073|gb|ADN54472.1| DNA polymerase III, delta subunit [Thermoanaerobacter sp. X513]
          Length = 338

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 114/302 (37%), Gaps = 22/302 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++FYG ++ L+ + I +FK  I        + +V+   + ++ +        +   F
Sbjct: 16  HNIYLFYGEERFLLSDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFF 75

Query: 81  SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLR 128
           S+ K+++++N   +         KK+++ +EE         ++II      +++K     
Sbjct: 76  SEYKLVVVKNEEDQLSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFY 133

Query: 129 KIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           K  EK   ++       +  ++      +           E    L+ ++G D  A  NE
Sbjct: 134 KFIEKTGKIVYFQKLSFEEAVNYTGYFFKKSGKKISKSDAE---YLVKSVGTDLYAIVNE 190

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + K+  Y  +   I  + +K+++       I  +++A    K   A  +    L      
Sbjct: 191 IHKVVCYS-DSEEIKMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVP 249

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +L   +++ +L+ KI    E   +  + I          ++   L    + + K  + 
Sbjct: 250 LIILSMIVRQMRLIAKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLE 306

Query: 308 ET 309
             
Sbjct: 307 RA 308


>gi|126640610|ref|YP_001083594.1| putative DNA polymerase III delta subunit [Acinetobacter baumannii
           ATCC 17978]
 gi|169634388|ref|YP_001708124.1| DNA polymerase III subunit delta [Acinetobacter baumannii SDF]
 gi|169797227|ref|YP_001715020.1| DNA polymerase III subunit delta [Acinetobacter baumannii AYE]
 gi|184156867|ref|YP_001845206.1| DNA polymerase III subunit delta [Acinetobacter baumannii ACICU]
 gi|213155979|ref|YP_002318024.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB0057]
 gi|215484668|ref|YP_002326903.1| DNA polymerase III, delta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|239500749|ref|ZP_04660059.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB900]
 gi|260556109|ref|ZP_05828328.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|301346498|ref|ZP_07227239.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB056]
 gi|301509988|ref|ZP_07235225.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB058]
 gi|301594197|ref|ZP_07239205.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB059]
 gi|332851268|ref|ZP_08433341.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013150]
 gi|332866137|ref|ZP_08436852.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013113]
 gi|332874057|ref|ZP_08441992.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6014059]
 gi|126386494|gb|ABO10992.1| putative DNA polymerase III delta subunit [Acinetobacter baumannii
           ATCC 17978]
 gi|169150154|emb|CAM88048.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase)
           (HolA) [Acinetobacter baumannii AYE]
 gi|169153180|emb|CAP02270.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase)
           (HolA) [Acinetobacter baumannii]
 gi|183208461|gb|ACC55859.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ACICU]
 gi|213055139|gb|ACJ40041.1| DNA polymerase III, delta subunit [Acinetobacter baumannii AB0057]
 gi|213985817|gb|ACJ56116.1| DNA polymerase III, delta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410164|gb|EEX03463.1| DNA polymerase III, delta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|323516632|gb|ADX91013.1| DNA polymerase III, delta subunit [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730148|gb|EGJ61475.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013150]
 gi|332734778|gb|EGJ65872.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6013113]
 gi|332737798|gb|EGJ68690.1| DNA polymerase III, delta subunit [Acinetobacter baumannii 6014059]
          Length = 329

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    E L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + + S  P  
Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIGSGEPES 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L +ID  I 
Sbjct: 291 WSALLLQIDAAIK 303


>gi|238791644|ref|ZP_04635282.1| DNA polymerase III subunit delta [Yersinia intermedia ATCC 29909]
 gi|238729260|gb|EEQ20776.1| DNA polymerase III subunit delta [Yersinia intermedia ATCC 29909]
          Length = 322

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 119/307 (38%), Gaps = 15/307 (4%)

Query: 28  GSDKGLIFELINQFKK-NISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86
           G++  L+ E  +  ++  I   + + FS   L+A     +I +      + SLF+ ++ +
Sbjct: 3   GNEPLLLQESQDHIRRVAIEHDFTEHFSFA-LDAHTEWDSIFSL---CQALSLFASRQTL 58

Query: 87  LIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY 143
            +   +      + + L ++      + ++I+++N++ K        +   ++ + +SC 
Sbjct: 59  TLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWFKALGSNGVFVSCQ 118

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
              +  L   +              A Q+L     G+ +A    L++LS     D  +T 
Sbjct: 119 TPEQAQLPRWVSTRAKSLNLEADDPAIQLLCYCYEGNLLALSQALERLSL-LYPDGKLTL 177

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+  + D         ++A I GK   A  +       +     LL    ++  LL  
Sbjct: 178 PKVEQAVNDAAHFTPYHWLDALIAGKSKRAWHILQQLQQEESEPIILLRTLQRELLLLLT 237

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           +      + +    +  + +  +   +R ++ ++L+  +   +++ +H +       R K
Sbjct: 238 LKRRM--NQVPLRTLFDQLK--VWQNRRPMMTQALQRLSLPQLQQAVHLLAQI--EVRLK 291

Query: 324 KYLEKNI 330
           +   ++I
Sbjct: 292 QDYGQSI 298


>gi|322389147|ref|ZP_08062709.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321144157|gb|EFX39573.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 109/307 (35%), Gaps = 29/307 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G    L     K I     D     F +   +  E++ +       + S 
Sbjct: 17  PILVLTGEDVGQFEWLKKDILKKIGYDPSDLNYSYFDMKEASYAEVELD-------LVSL 69

Query: 78  SLFSKKKIILIENL-----STEKKVLDC----LEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +KI+++++L     + ++ + D      E  +     +  ++I +  ++     L
Sbjct: 70  PFFADEKIVILDHLLDLTTAKKRNLTDEDLKQFENYLENPSESTRLVIFAEGKLDSKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   +  I      +  L                 ++   LL   G D    +  
Sbjct: 130 VKLLKRDAQI--IEATTPKEQDLKRYFSGQAQELGLHFVGDSLDQLLLKSGYDFGELQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L +Y  ED  IT Q +++++  +    I ++    ++ +I  A  L           
Sbjct: 188 LALLQAYK-EDGQITLQDIEEVVPKSLQDNIFDLTQMILKRQIDQARNLVKDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT----EKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ I  E    S  +I+        + + P +        R  + 
Sbjct: 247 IKLIAILLGQFRMFSQVKIFSE-EGQSESQIVASLSDLSGRKVNPYQVKFALRDSRRLSL 305

Query: 304 NLVRETL 310
           + +++ +
Sbjct: 306 SFLKQAM 312


>gi|260549057|ref|ZP_05823278.1| DNA polymerase III subunit delta [Acinetobacter sp. RUH2624]
 gi|260407785|gb|EEX01257.1| DNA polymerase III subunit delta [Acinetobacter sp. RUH2624]
          Length = 329

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 133/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRIPEARGAWILHGQEPLLEQNLLDTFRKSWQQQ---DIERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    E L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILAAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + + S  P  
Sbjct: 181 MRVRDTFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIGSGEPES 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L +ID  I 
Sbjct: 291 WSALLLQIDAAIK 303


>gi|320175118|gb|EFW50230.1| DNA polymerase III delta subunit [Shigella dysenteriae CDC 74-1112]
 gi|320185383|gb|EFW60153.1| DNA polymerase III delta subunit [Shigella flexneri CDC 796-83]
          Length = 343

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 98/266 (36%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK    + +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRTLHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|307245738|ref|ZP_07527824.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254709|ref|ZP_07536537.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259151|ref|ZP_07540881.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853440|gb|EFM85659.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862382|gb|EFM94348.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866818|gb|EFM98676.1| DNA polymerase III subunit delta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 303

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 15/265 (5%)

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124
            +    S  LF  ++II++    +     +  + E+   +  + ++I+     S  ++K 
Sbjct: 26  LFEAAQSNGLFFNRQIIILNLPEAPTAAQMKNVAELCRFSHPDLLLILCLPKFSKAMEKQ 85

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
               +I       + I+C       L   I       +  I  EA Q+L  +  G+ +A 
Sbjct: 86  AWFTQI---EAQTVQINCQTPEMAKLPTWISHRAKAMELQIEPEAIQLLCYSYEGNLLAL 142

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +  LQ L      D  I+    K+++  +      + I+A ++GKI  A  +       +
Sbjct: 143 KQALQMLQLR-FNDGKISLARAKEVVEQSAQFSPFQWIDALLEGKIARAERILKHLQNEE 201

Query: 245 MPSHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESL 298
           +    LL    ++   LLE     +   N +    +           +   +R   Q ++
Sbjct: 202 VQPVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQAAV 261

Query: 299 RIWNKNLVRETLHKIDHRIHLARKK 323
           +      + + + ++       +++
Sbjct: 262 QRLTYKKLYQLIQRLAELEKQVKQE 286


>gi|324114761|gb|EGC08729.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 343

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQAQLRQAVQLLTRTEITLKQ 314


>gi|251780473|ref|ZP_04823393.1| DNA polymerase III, delta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084788|gb|EES50678.1| DNA polymerase III, delta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 344

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 116/324 (35%), Gaps = 18/324 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D+ LI + I+   K       D  +L+ ++ ++   +     N   +  + S K
Sbjct: 20  YIFCGLDEELIKDSIDSILKKTIGNDKDNLNLIRIDGMKTNYDE--IMNACETFPMMSDK 77

Query: 84  KIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAE 132
           K++++            ++ K     L+          +I+  + +++ +K N  +++  
Sbjct: 78  KVVIVYRANFLKDKSDEASNKIYKSILKYASDMPPYTILIMYYLFNDKREKPNKNKRLNS 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
               +  + C    +   +  I +   + +K+I +         +  +    + E+ KL 
Sbjct: 138 LDKLIPVVHCDKLRRDSYIKKINDLFKLNKKNIGRIEVMYFAEKVQNNFDIIKREIDKLI 197

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           SY      IT++ +  +I  +    + +++    Q KI  A+ +    L        ++ 
Sbjct: 198 SYTNG-REITKKDIDMLISSSGEDDVFDLVELIAQRKIERAMDVMKEILYKSDQHMLIIS 256

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              + F  L  I              + + +      ++  L      + +  +   L K
Sbjct: 257 NIQRHFIKLYDIKTGL-RQGKKISTFMSELKLPQFICEK--LAAQSSKFTEKQLS-ELVK 312

Query: 313 IDHRIHLARKKKYLEKNIIFQTIL 336
           +        K   L+K +  + +L
Sbjct: 313 LCVNTENNLKSSGLDKTMEMELLL 336


>gi|199598191|ref|ZP_03211613.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus HN001]
 gi|229552128|ref|ZP_04440853.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|258508331|ref|YP_003171082.1| DNA polymerase III delta subunit [Lactobacillus rhamnosus GG]
 gi|258539541|ref|YP_003174040.1| DNA polymerase III subunit delta [Lactobacillus rhamnosus Lc 705]
 gi|199590952|gb|EDY99036.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus HN001]
 gi|229314561|gb|EEN80534.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|257148258|emb|CAR87231.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus GG]
 gi|257151217|emb|CAR90189.1| DNA polymerase III, delta subunit [Lactobacillus rhamnosus Lc 705]
 gi|259649647|dbj|BAI41809.1| DNA polymerase III delta subunit [Lactobacillus rhamnosus GG]
          Length = 353

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 102/280 (36%), Gaps = 17/280 (6%)

Query: 68  STFWNEINSTSLFSKKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKS 118
               ++  S   F + + ++I++   L+ EK        L  L+      + + ++++ +
Sbjct: 60  GVALDDATSIPFFGEYREVVIDDPYFLTGEKSTDKIEHDLTGLQAYFDNPVPSTMMVLIA 119

Query: 119 N--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
              ++ +   L K  +K   ++  +    ++      + +     Q  I   A   L+  
Sbjct: 120 PYKKLDERKRLTKALKKAALIVDAAPL--DERSARMALAQIFKQHQVDIQPPALDALVQR 177

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G       E++KL +Y  +   +T   V  ++       + +++   ++    +A+ L
Sbjct: 178 TNGQYSVMMGEVRKLLTYASDGSPLTVAAVSALVPKQLNDRVFDLVTDVLRQNAADALAL 237

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               LA +     L    L +F+LL ++ ++ +        I    +    P +  +   
Sbjct: 238 YRDLLAQREEPIRLNALMLGQFRLLIQVKLLAQ-KGYGQGDIAATLKA--HPYRVKLALR 294

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            +     + + +    +      A K   ++K + F+  +
Sbjct: 295 QVGRLPYHQLAQAYSGLVDTE-TAMKTGTIDKALAFELFM 333


>gi|77359975|ref|YP_339550.1| DNA polymerase III subunit delta [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874886|emb|CAI86107.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 345

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 124/299 (41%), Gaps = 16/299 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++ +G +     + + Q +        D      ++   + Q+ I+ +     S SLF
Sbjct: 18  PFYLVFGEEPFQEAQCVQQIRAIAKEQGFDEVIKFTLMQGFDWQEIIAQY----QSMSLF 73

Query: 81  SKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           S + II + +L+ +K  +   +  ++II     + I+IIK  +  ++       +     
Sbjct: 74  SARTIIEL-DLNQQKPGIIGSNTFKKIIELINPDTILIIKGAKASQDVQRSAWFKALDKH 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            L + CYP    H+   ++E       ++  EAK  L++   G+ +A   EL+KLS    
Sbjct: 133 GLFVPCYPLTGTHVKRWLDEQCQRLSLNMQNEAKLSLISATEGNLLACFQELEKLSL-LH 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            + LIT+Q V   + +     I ++ +A + G+   AI + +   +      ++L    +
Sbjct: 192 ANALITQQLVMQGLLNQAKFDIFDLSDALLNGQAKQAIKVLNKLASDNTEVVSILWAITK 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-LQESLRIWNKNLVRETLHKID 314
           +   L    I  +   ++ E I    ++  I   +   +Q ++   + + + +   ++ 
Sbjct: 252 ELNTL----IDVQIGLLNGEPIANLFKQKAIWKNQQAPVQSAINRLSIHTLEQISSELA 306


>gi|88811890|ref|ZP_01127143.1| DNA polymerase III subunit delta [Nitrococcus mobilis Nb-231]
 gi|88790774|gb|EAR21888.1| DNA polymerase III subunit delta [Nitrococcus mobilis Nb-231]
          Length = 340

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 98/294 (33%), Gaps = 13/294 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA I   +  +  +  L     V++  G +  LI E     +       +    +  L+A
Sbjct: 1   MAKIRIDELERHLSGRLA---PVWLVAGEEPLLIDEAGAGIRAAARTAGYSERQV--LHA 55

Query: 61  LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                +         + SLFS++++I   +            L+        + ++++ S
Sbjct: 56  ETDGFDWRQLGAAAGNLSLFSERRLIELRLPGGKPGAGGAQALQAYCRAPPADTLLLVAS 115

Query: 119 NEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
             +          E  +   + +  +P  +  L   I + L        +   ++L    
Sbjct: 116 ARLDARQRRGAWVEALSRAGVMLYIWPVGRRDLPRWIMQRLHSRGLIADRMVVELLAERA 175

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A+  E++KL    L    +     +  + D+    + ++  A + G       + 
Sbjct: 176 EGNLLAAAQEVEKLYL-LLGAGQVDLAAARRAVVDSARYDVFDLSEAVLGGGCTRVARIC 234

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
                       +L    ++ ++L  +  +   +     +I +   ++ IP  R
Sbjct: 235 RGLQEEGTEPTLVLWALARELRVLATLSALAGDAR----RINELFRQHRIPKHR 284


>gi|116620840|ref|YP_822996.1| DNA polymerase III subunit delta [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224002|gb|ABJ82711.1| DNA polymerase III, delta subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 352

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 102/342 (29%), Gaps = 42/342 (12%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G +      + +     +         L  +   EI  +         + SLF+ ++
Sbjct: 20  LLLGPEAYERRRIKDALLAGVPEGSVTQHDLSEVTVAEILDD-------ARALSLFASER 72

Query: 85  IILIENL--------------------STEKKVLDCLEEIIIKNICNHIIIIKS------ 118
           +I + N                              L   +        +I ++      
Sbjct: 73  LIWVVNAELALPRGRAAASDDESDNDAPAAAGDAAPLVSYMKDPTPGVTLIFEAIRYDFE 132

Query: 119 -NEIKKNNTLRKIAEKFTSVLAISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
             + +K + +RK       V+ +  Y   D +     L+          +   A  +L+ 
Sbjct: 133 GEDKRKQDRVRKFYAAIPDVVELHKYSVQDARAEAESLVRH----AGFRMDPAALDLLIE 188

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
            LG D      E++KLS +   + +I    + +++ D     I  ++NA  +     ++ 
Sbjct: 189 ALGADIARVAVEVEKLSLFA-GNRVIGVDDITELVPDARATTIFALVNALGRRDRARSLA 247

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
           + D            L     +F++          ++   +    K    +   +   + 
Sbjct: 248 ILDTLTREGEYLPLALAFLSSQFRMALVAREAGLKNSSQIQGHFSKLGIPMWGSRAEQVY 307

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
           +++  +    +   +  I       R     +  I+ +T + 
Sbjct: 308 QTVSKFTPPQMERAIKLIYKADKGLR-DARPDDRIVMETFIT 348


>gi|320105920|ref|YP_004181510.1| DNA polymerase III subunit delta [Terriglobus saanensis SP1PR4]
 gi|319924441|gb|ADV81516.1| DNA polymerase III, delta subunit [Terriglobus saanensis SP1PR4]
          Length = 392

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 116/353 (32%), Gaps = 38/353 (10%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQ-FKKNISITYHDPFSLVVLNALEIQ 64
           S +F+ +           ++  G +  L +E   +   + +       F L  L+  E  
Sbjct: 12  SDRFLAEIAS--PALRPGYVLAGDELFL-YERCRRGVLQTLVPDNLRDFCLHDLDLAETS 68

Query: 65  KNISTFWNEINSTSLFSKKKIILIENL------STEKKVLDCLEEIIIKNICNHIIIIKS 118
              +   ++  + SL +  ++    NL        +K     ++          ++I  +
Sbjct: 69  IFEA--LDQAQTPSLMAPFQVFFFRNLKVLYTRGAKKDEFAAIDAYFRSPNPQALLIFVA 126

Query: 119 NEIKKNNTLRKI-------AEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSIS 166
           + ++    LRK+        E+    L   C        ++   +  +  +         
Sbjct: 127 DHLRLPADLRKMDMQDKDRFERIRETLGDLCGVVELARVDEQDAVRWVTATCDEQNTKCD 186

Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYC----------LEDILITEQHVKDIICDTHVL 216
            +A + L+  LG D +   +EL+KL  Y             +  IT   V+ ++      
Sbjct: 187 PDAARELVDALGADMMLVASELEKLLLYVSAPREQAGVEHAEARITLGDVETLVLAAKQR 246

Query: 217 YIEEIINATIQGKIYNAIMLADFFLA----SKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
            + E+ +A        A+ L    L      +  +   L+   + F+ +  I       +
Sbjct: 247 SLYELTDAISLHDRAAALGLLHGLLNASDGGEDSAIGHLYMLARTFRQMLIIAEKNVRDS 306

Query: 273 ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            +  +++ +  +       ++++++ R  ++  +   L  I       R    
Sbjct: 307 RAIWQVLWQGFRMPPFAADDLIRQARRYKSRRELSRALRLIARADLELRNSPP 359


>gi|124026820|ref|YP_001015935.1| DNA polymerase III subunit delta [Prochlorococcus marinus str.
           NATL1A]
 gi|123961888|gb|ABM76671.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 342

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G+D       I +   ++  +    F+   L+  + ++N      E  S  L S
Sbjct: 2   PIHLIWGNDYEACNREIEELINSVIDSSWKSFNYSHLDGNDPKQN-LRALEEAQSAPLGS 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
             +I+L+            L   + +         H+I+  SN+  K     K+ EK   
Sbjct: 61  GGRIVLVRRSPFCNGCSIELSNKLEQVIKLIPDKTHLILSNSNKPDKRLKTTKLIEKSIQ 120

Query: 137 VLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                     I   P +     +L++  L      ++ E   +++ ++G D      ELQ
Sbjct: 121 SNTLSQEKSFILPLPWDINGQRNLVKNILQQLNLKMNYETIDLIVESIGNDSSLINTELQ 180

Query: 190 KLSSYCL---------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           KLS +           +   I+++ VK +I +     + EI N+ ++G+I  A+      
Sbjct: 181 KLSLFSEAVNTNLTTDKPREISKELVKKLIQNNSTNAL-EIANSLLKGEIIIALNKIQSL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQE 296
           L +  P+  L+     + +    +H++    N   ++I + +     K I  +++ I  +
Sbjct: 240 LKNGEPALRLITTLTGQSRGWLWVHLLDSQGNQDVKEIAKLSGIANPKRIFVIRKQIQGK 299

Query: 297 SLR 299
           SL 
Sbjct: 300 SLE 302


>gi|124265409|ref|YP_001019413.1| DNA polymerase III subunit delta [Methylibium petroleiphilum PM1]
 gi|124258184|gb|ABM93178.1| DNA polymerase III, delta subunit [Methylibium petroleiphilum PM1]
          Length = 363

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 103/317 (32%), Gaps = 17/317 (5%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            I+  +      K L     ++  +G +  L  E  +  +       H    +  +    
Sbjct: 2   QIKPDQLDAHLKKGL---RPLYTLHGDEPLLALEASDAIRAAARDAGHTEREVHHVAGAH 58

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              + S+     +S SLF++ KI+ I   +    K     L+          + ++    
Sbjct: 59  F--DWSSLLGAASSMSLFAEAKIVEIRIPSGKPGKDGSQALQHYCEHLPEGVVTLVTLPR 116

Query: 121 IKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILL 174
           + +  +         S  + +   P  +  L   I + L    + ++ +           
Sbjct: 117 LDRQQSGSAWFGALESAGVTLRLDPVERQALPQWIAQRLAAQNQRVAADEEGQRTLAFFA 176

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
             + G+ +A++ EL KL         ++ + V+  + +     + ++  A + G++   +
Sbjct: 177 DRVEGNLLAAQQELTKLGL-LYPAGELSFEQVEAAVLNVARYSVFKLGEAVLAGQVSRVL 235

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
            + D   A    +  +     +  + L +       +       +++    I  +K  + 
Sbjct: 236 RMLDGLRAEGEAAVLVHWTLAEDIRALRRCKDAV-AAGKPLPMALRENR--IWGLKERLF 292

Query: 295 QESLRIWNKNLVRETLH 311
           + +L       +   + 
Sbjct: 293 ERALPRLGDGTIDHLIE 309


>gi|319902128|ref|YP_004161856.1| DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108]
 gi|319417159|gb|ADV44270.1| DNA polymerase III, delta subunit [Bacteroides helcogenes P 36-108]
          Length = 339

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 113/326 (34%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEEAYYIDLIADYIADNVLTDTEKEFNLSVVYGADV--DIATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++   + + + D L   + K + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQSIRNM-DELSYYLQKPLNSTILVICHKHGVLDRRKKL--AAEIEKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPAFITAYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              IT + ++  I  +      E+  A ++  +  A  +  +F  +    P    L    
Sbjct: 196 QTRITPEQIERNIGISKDYNNFELRGAIVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E S       +           R  L  ++R ++     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKSEQGIANFLGLKSP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNSSLNDGDILRELVFKI 337


>gi|323344174|ref|ZP_08084400.1| hypothetical protein HMPREF0663_10936 [Prevotella oralis ATCC
           33269]
 gi|323094903|gb|EFZ37478.1| hypothetical protein HMPREF0663_10936 [Prevotella oralis ATCC
           33269]
          Length = 344

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 104/259 (40%), Gaps = 10/259 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +   I ++ +   +N+       F+  ++   ++  N +   +      + S
Sbjct: 26  PIYILMGEEAYFIDKISDYIAENVLQPEERDFNQNIVFGSDV--NAAQVADLAKGYPMMS 83

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++++++     +   + LE+ + K + + I+++  K+  I +   L   AE     + 
Sbjct: 84  EYRVVIVKEAQNIRA-AEPLEKYLEKPVMSTILVLCHKNGSIDRRKKLVSKAEVA--GVV 140

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198
                     L   IE  LL  + +I  ++  ++  ++G D     +EL KL  S    D
Sbjct: 141 FESKKKRDYELPGFIEGYLLKHKVAIDNKSASMIADHIGSDLGRLTSELDKLQISLPEND 200

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             +T + V++ I  +      E+ NA +   I+ A  + ++F  +       A L     
Sbjct: 201 RRVTPEIVEERIGVSKDFNAFELRNAIVNRDIFKANQIINYFDRNPKAGSIFAFLPLLFN 260

Query: 257 KFQLLEKIHIIKECSNISF 275
            FQ L   +     +N + 
Sbjct: 261 YFQNLMLSYYAPNRNNENS 279


>gi|323527342|ref|YP_004229495.1| DNA polymerase III subunit delta [Burkholderia sp. CCGE1001]
 gi|323384344|gb|ADX56435.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1001]
          Length = 372

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 103/286 (36%), Gaps = 15/286 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K+  D L+ +      + + +I    +               + +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKALAGSVNDDVVTMITLPRLDAATQKSAWFTALADAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + + D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPAGALSFEQIHDAVLNVARYDVFKLNEAMLAGDVGRLSRMIDGLKGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           +++ + L +I      +      ++++    +   +  ++  +L  
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSR 297


>gi|319791141|ref|YP_004152781.1| DNA polymerase iii, delta subunit [Variovorax paradoxus EPS]
 gi|315593604|gb|ADU34670.1| DNA polymerase III, delta subunit [Variovorax paradoxus EPS]
          Length = 357

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 18/301 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +  L  E  +  +       +   S   +       + S       S SLF+
Sbjct: 18  PLYTIHGDEPLLAQEAADAIRAAAREQGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFA 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTS 136
            K+I+ I   +    K     L+++      N   + ++    + K             +
Sbjct: 76  DKQIVEIRIPSGKPGKDGSTALQQLAEAAPGNDSTLTLVMLPRLDKATRTGAWFSALENN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKL 191
            ++I   P  +  L   I + L    + +          Q     + G+ +A+  E+QKL
Sbjct: 136 GVSIQVDPVERNVLPQWIAQRLGQQGQRVMPGDEGQRTLQFFADRVEGNLLAAHQEIQKL 195

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +        ++ + V+  + +     + ++  A + G       + D   A       + 
Sbjct: 196 AL-LHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRVARMLDGLQAEGEAEVLVH 254

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNKNLVRETL 310
           +   +  + L+++                   +N I   +    +  L   +  ++   L
Sbjct: 255 YTIAEDIRALKRVKDAMAAGRPLPM----ALRENRIWGPRERAFERVLPRLDDRMLARLL 310

Query: 311 H 311
            
Sbjct: 311 R 311


>gi|297205845|ref|ZP_06923240.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           jensenii JV-V16]
 gi|297148971|gb|EFH29269.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           jensenii JV-V16]
          Length = 328

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 126/317 (39%), Gaps = 29/317 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN  + +   + YG D  L   LI  +  +        F+ + L  ++ + + +      
Sbjct: 7   KNSNVQNKNLLIYGEDAFLNDYLIRDYLASS------DFAGLDLQRVDCENDGLGELLAS 60

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122
           +   SLFS++KII I+N       + KK+   +E++       N+ + ++II++N   + 
Sbjct: 61  LTEASLFSQQKIIWIKNPIFLTGKSPKKIQADVEKLEKVFANLNLSDDVVIIQANYANLD 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K   + K++    + +A+   P     +  +I+  +     SIS+    +LL        
Sbjct: 121 KRKKITKLSLSAFNSVAVQFKPYE---VSGIIKSIIKDEGYSISQSTLHLLLERSDQVMD 177

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            + +   KL     ++  IT + V++ +  +    I EI+++  +     AI   +  L 
Sbjct: 178 TALSNYLKLKLISDDNKKITLEAVQNNVDLSLAQNIFEILSSAFKKNYQEAIERLEDQLR 237

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
                  +L  F  + +++    I+      S   + ++    I P +  + ++      
Sbjct: 238 EGQNPVRILAVFENQLEVILSAKILL-ARRRSEMDVGKELG--IHPYRVKLARQ-----T 289

Query: 303 KNLVRETLHKIDHRIHL 319
           +  + +    +   I L
Sbjct: 290 QASIPKIKKLLLEAIKL 306


>gi|167037814|ref|YP_001665392.1| DNA polymerase III subunit delta [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116232|ref|YP_004186391.1| DNA polymerase III subunit delta [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856648|gb|ABY95056.1| DNA polymerase III, delta subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929323|gb|ADV80008.1| DNA polymerase III, delta subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 338

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 113/302 (37%), Gaps = 22/302 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H +++FYG ++ L+ + I +FK  I        + +V+   + ++ +        +   F
Sbjct: 16  HNIYLFYGEERFLLSDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFF 75

Query: 81  SKKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLR 128
           S+ K+++++N   +         KK+++ +EE         ++II      +++K     
Sbjct: 76  SEYKLVVVKNEEDQLSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFY 133

Query: 129 KIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           K  EK   ++       +  ++      +           E     + ++G D  A  NE
Sbjct: 134 KFIEKTGKIVYFQKLSFEEAVNYTGYFFKKSGKKISKSDAE---YFVKSVGTDLYAIVNE 190

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + K+  Y  +   I  + +K+++       I  +++A    K   A  +    L      
Sbjct: 191 IHKVVCYS-DSEEIKMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVP 249

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +L   +++ +L+ KI    E   +  + I          ++   L    + + K  + 
Sbjct: 250 LIILSMIVRQMRLIAKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLE 306

Query: 308 ET 309
             
Sbjct: 307 RA 308


>gi|160889584|ref|ZP_02070587.1| hypothetical protein BACUNI_02010 [Bacteroides uniformis ATCC 8492]
 gi|317480074|ref|ZP_07939185.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156861101|gb|EDO54532.1| hypothetical protein BACUNI_02010 [Bacteroides uniformis ATCC 8492]
 gi|316903751|gb|EFV25594.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 339

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 114/326 (34%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEESYYIDLISDYIVDNVLTDTEKVFNLTVVYGADV--DIATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S++++++++     + + + L   + K + + I+++  K   + +   L   AE     +
Sbjct: 79  SERQVVVVKEAQAIRNM-EELSYYLQKPLNSTILVLCHKHGVLDRRKKL--AAEIEKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLDPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              +T + ++  I  +      E+ +A ++  I  A  +  +F  +    P    L    
Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E +       I           R  L  ++R ++     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNSSLSDGDILRELVFKI 337


>gi|61679660|pdb|1XXH|A Chain A, Atpgs Bound E. Coli Clamp Loader Complex
 gi|61679665|pdb|1XXH|F Chain F, Atpgs Bound E. Coli Clamp Loader Complex
          Length = 343

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 97/266 (36%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAXSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLXGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R    E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGXXGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQTQLRQAVQLLTRTELTLKQ 314


>gi|167754460|ref|ZP_02426587.1| hypothetical protein ALIPUT_02756 [Alistipes putredinis DSM 17216]
 gi|167659085|gb|EDS03215.1| hypothetical protein ALIPUT_02756 [Alistipes putredinis DSM 17216]
          Length = 356

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 10/252 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I  L +     I       F+   L       +     N      +  
Sbjct: 29  PVYLLMGEEAFFIDALCDLLASTILQESERAFN--QLTVYGRDSDAGQVVNLCRQMPMMG 86

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++++++  + + + LD L     K     I+I+  K   + K + L K          
Sbjct: 87  SYQVVILKE-AQQLRGLDKLSLYTSKPSPTTILIVCHKEKNVDKRSQLYKSI--AQHGAV 143

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198
           +         +   + + +     +I  +A+ +L  +LG D     NEL KL        
Sbjct: 144 LESVRPRDYEIGPWLAQFVASKGCTIDAKAQAMLTDHLGTDLAKISNELGKLLLSLPEGT 203

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT+ H++  I  +      E+  A     +  A+ +AD F  +    P    +     
Sbjct: 204 KKITDAHIEQNIGISKDFNNFELCKAVTGQNLEQALRIADHFARNPKDNPLLVTILALFN 263

Query: 257 KFQLLEKIHIIK 268
           +F+ + +I+ ++
Sbjct: 264 QFREIFRINYLR 275


>gi|148238418|ref|YP_001223805.1| DNA polymerase III subunit delta [Synechococcus sp. WH 7803]
 gi|147846957|emb|CAK22508.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 7803]
          Length = 326

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 107/323 (33%), Gaps = 20/323 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D   +   I     +         +L  L+  +  +       E  +    S
Sbjct: 2   PIQLLWGDDSAALERAIQAVIDSALDPAWASVNLSRLDGSDSGQARQAL-EEARTPPFGS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             +++L++          ++ D  E  I     +  +++ +   K +  LR        V
Sbjct: 61  GARVVLLQRSPFCNGCPSELADRFEASIDTIPDSTELLLCNPN-KPDGRLRTTKALQKRV 119

Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            A         +    D       L+E +    + S+  +A   L+  +G D      EL
Sbjct: 120 KAGQAKELSFKLPAVWDGAGQ-RQLVERTASELKLSLEPKAVDALIDAIGSDSARLSMEL 178

Query: 189 QKLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           QKL+ +        I+   V+ +I       ++ + +A + G    AI L D  L    P
Sbjct: 179 QKLALHAESTGSPHISATAVQSLIDGLSTNALQ-VGDALLAGDPGEAIALLDALLDGGEP 237

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
           +  ++     + +    + ++++        I +       P +  ++++ L+  +    
Sbjct: 238 ALRIVATLTGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPERC 296

Query: 307 RETLHKIDHRIHLARKKKYLEKN 329
              L ++       ++       
Sbjct: 297 LNLLGRLLDVEAALKRGAQPGDA 319


>gi|262280961|ref|ZP_06058744.1| DNA polymerase III subunit delta [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257861|gb|EEY76596.1| DNA polymerase III subunit delta [Acinetobacter calcoaceticus
           RUH2202]
          Length = 329

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 133/308 (43%), Gaps = 28/308 (9%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +   +I +G +  L   L++ F+K+              +   +  +    +N +NS SL
Sbjct: 15  ARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNALNSLSL 70

Query: 80  FSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKF 134
           FS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   ++ E  
Sbjct: 71  FSQQLAIEVHGNIKPDANGLKQLKSYIQNNEHNLLLIVLPKQDSSSLK--SAFFQVVEAN 128

Query: 135 TSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             V+A+ + YP ++  ++++  E L   +  +  +A Q L+ +   + +A++N L ++  
Sbjct: 129 GVVVALTANYPQDRQRILNVEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSLMRVRD 185

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
              +  LI  + +   + D       ++ +A ++G +  +I +  + +A+  P   +L  
Sbjct: 186 TFPDQKLIQIEQLYACLQDQSRYTTYDLSDALLEGNLGQSIKIFQYLIAAGEPDSLILWT 245

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV---RETL 310
             ++ +LL ++          FE+     +  I   K  + Q++LR  N          L
Sbjct: 246 LSKEMRLLMQL----------FEQPHNALQLGIWKTKVGLYQQALRRLNPQQFLGWSTLL 295

Query: 311 HKIDHRIH 318
            +ID  I 
Sbjct: 296 LQIDAAIK 303


>gi|51595448|ref|YP_069639.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis IP
           32953]
 gi|186894479|ref|YP_001871591.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588730|emb|CAH20341.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis IP
           32953]
 gi|186697505|gb|ACC88134.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 344

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 103/273 (37%), Gaps = 12/273 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLN 59
           M  I   + + +  + L   +   +  G++  L+ E  +  ++      + + FS   L+
Sbjct: 1   MIRIYPEQLVAQLHEGLRACY---LLCGNEPLLLQESQDHIRRVASQHDFTEHFSFA-LD 56

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           A    ++I +      + SLF+ ++ +L+   +      + + L ++      + ++I++
Sbjct: 57  AHTEWEHIFSL---CQALSLFASRQTLLLSFPDSGLTAPISEQLVKLSSLLHPDILLILR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           +N++ K        +    + + +SC    +  L   +         ++   A Q+L   
Sbjct: 114 ANKLTKAQENSAWFKALSKNGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A  +
Sbjct: 174 YEGNLLALSQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
                        LL    ++  LL  +    E
Sbjct: 233 LQQLQQEDSEPVILLRTVQRELLLLLALKRQME 265


>gi|332653430|ref|ZP_08419175.1| DNA polymerase III, delta subunit [Ruminococcaceae bacterium D16]
 gi|332518576|gb|EGJ48179.1| DNA polymerase III, delta subunit [Ruminococcaceae bacterium D16]
          Length = 353

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 90/257 (35%), Gaps = 12/257 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ +G +  L    + + ++ +     + F+   + A ++          I+   + ++
Sbjct: 27  LYLLHGEETYLRDYYLGRLREKVLAGGLEEFNFHPIAAKDMS--PHALEEAIDCLPMMAE 84

Query: 83  KKIILIENLSTEKKVLDCLEEI--IIKNICNHIIIIKSNEI-----KKNNTLRKIAEKFT 135
           + ++ + +    K      E    ++  + +++ ++   ++             + ++  
Sbjct: 85  RTLVQVTDFDLFKAGEKDREAYGKLLSQLPDYVCLVFVFDLVPFKMDARTKFSAVIKQAG 144

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +V+       ++  L+D +        K I  +    L+   G        E++K+ +Y 
Sbjct: 145 TVVNFV--RQDQGDLVDWVRRRFRALGKDIDSKLALDLIFLCGDLMTNLIGEIEKIGAYA 202

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT Q +  +        +  + +A  +GK   A  +       + P   ++    
Sbjct: 203 KGV-HITRQDIDAVATPQLDAVVFRMTDAIGEGKFDQAASVLGELYQMQEPPIKIMWSLG 261

Query: 256 QKFQLLEKIHIIKECSN 272
           ++ + L    +  E   
Sbjct: 262 RQMRQLYSARLALEQGR 278


>gi|299139534|ref|ZP_07032708.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX8]
 gi|298598462|gb|EFI54626.1| DNA polymerase III, delta subunit [Acidobacterium sp. MP5ACTX8]
          Length = 383

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 126/366 (34%), Gaps = 32/366 (8%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + +F+ + + +     +V +  G +  L         + +       F L  L+  E   
Sbjct: 14  AERFVAEISGDARRPGYVLL--GDESFLYEICRRGVLQALVPGELREFCLHDLDLGETSI 71

Query: 66  NISTFWNEINSTSLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
             +   +   + SL +  +++ + N         +K+    ++E   +     +++  ++
Sbjct: 72  FEA--LDLAQTPSLMAPFQVLFLRNIQKLYGRGQKKEEFAAIDEYFRRPNPQALLVFVAD 129

Query: 120 EIKKNNTLRKI-------AEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISK 167
            I     LRK+       AE+    L  +C        ++   +  +            +
Sbjct: 130 HISLPQDLRKMDMQDKERAERIRETLGDACGVVELQRVSEDDAVLWVMRESEAKGVRFHE 189

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ITEQHVKDIICDTHVLYIEEI 221
           +A + L+  LG + +  ++EL+KL  Y            I    V+ ++       + E+
Sbjct: 190 DAARELVDALGAEMLTIKSELEKLMLYAGARGEAAGDAGIDVADVETMVAAAKQRSLYEL 249

Query: 222 INATIQGKIYNAIMLADFFL----ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
            +A        A+ L    L      +  +   +    + F+ +  ++  +     +  +
Sbjct: 250 TDAISLKDAPRALALLHGLLNASDGGEDAAIGHIFTLAKTFRQMLVLNEKQVKDQRAMWQ 309

Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
           ++    +        ++ ++ R  ++  +   L  I       R     ++ ++ + ++ 
Sbjct: 310 VLWPGFRVAPFAADALIAQARRYRDRGELTRGLRWIARADLELRSSPADKRLVLERLVMR 369

Query: 338 IAQTAC 343
           +A  A 
Sbjct: 370 LASKAR 375


>gi|88809947|ref|ZP_01125452.1| hypothetical protein WH7805_09042 [Synechococcus sp. WH 7805]
 gi|88786137|gb|EAR17299.1| hypothetical protein WH7805_09042 [Synechococcus sp. WH 7805]
          Length = 326

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 18/322 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D   +   I     +         +L  L+  E  +       E  +     
Sbjct: 2   PIQLLWGDDSAALERAIQSVINSALDPAWASVNLSRLDGSESGQARQAL-EEARTPPFGG 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNIC---NHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
             +++L++           L +    +I    +   ++  N  K +  LR        V 
Sbjct: 61  GARVVLLQRSPFCNACPSELADRFEASIDAIPDSTQLLLCNPTKPDGRLRTTKALQKRVK 120

Query: 139 A---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           A         +    D       L+E +      ++   A   L+  +G D      ELQ
Sbjct: 121 AGQAKELSFKLPAVWDGAGQ-RQLVERTADELALTLEPNAVDALIDAIGSDSARLTMELQ 179

Query: 190 KLSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           KL+ +        I+   V+ +I       ++ + +A + G    AI L D  +    P+
Sbjct: 180 KLALHAESTGSDRISAAAVQSLIDGLSTNALQ-VGDALLAGDPGEAIALLDALIEGGEPA 238

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             ++     + +    + ++++        I +       P +  ++++ L+  +     
Sbjct: 239 LRIVATLSGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPERCL 297

Query: 308 ETLHKIDHRIHLARKKKYLEKN 329
           + L ++       ++       
Sbjct: 298 KLLGRLLDVEAALKRGALPGDA 319


>gi|293391008|ref|ZP_06635342.1| DNA polymerase III, delta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951542|gb|EFE01661.1| DNA polymerase III, delta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 344

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 111/311 (35%), Gaps = 14/311 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V+   G D  L+ E  N   +       D    V L+ +    + +  +  + S  LF  
Sbjct: 20  VYFLVGEDPLLLNESANGIYQTALQRGFD--EKVELD-INASTDWNDLFERVQSMGLFFN 76

Query: 83  KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TSV 137
           K++I+++       +L   L E I     + + I +  ++ K    +             
Sbjct: 77  KQLIILDLPENATALLQKNLSEFISLLQPDVLPIFRLAKLTKAAEKQAWFMAANQYEPQA 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + ++C   N   L   +     +   SI +EA Q+L  +   + +A +  LQ L      
Sbjct: 137 VLVNCQTPNAEQLPRWVANRAKMLGLSIEQEAVQLLCYSYENNLLALKQTLQLLDL-LYP 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V  ++  + V    + ++A + GK   A  +        +    LL    + 
Sbjct: 196 DRKLTFARVNSVVEQSSVFTPFQWVDAILGGKGNRARRILTGLKDEDVQPIILLRTLQRD 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLHK 312
              L +I   ++  ++       +  +      +   +R++  ++++      +     +
Sbjct: 256 LMTLLEISKPEQPQSLDSPLPTDQLREQFDRLKVWQNRRSLFTQAVQRLTYRKLYLFFQQ 315

Query: 313 IDHRIHLARKK 323
           +      A+++
Sbjct: 316 LADVERCAKQE 326


>gi|86141367|ref|ZP_01059913.1| hypothetical protein MED217_05097 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831926|gb|EAQ50381.1| hypothetical protein MED217_05097 [Leeuwenhoekiella blandensis
           MED217]
          Length = 343

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 90/255 (35%), Gaps = 12/255 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I +L +    N+       F+ +VL   ++  +     ++     + 
Sbjct: 18  RPIYFLMGEEPYYIDQLADYIADNVLTEEEKGFNQMVLYGRDVSLD--DVLSQAKRFPMM 75

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           +++++++++          +   K  + LE          +++      K +   R   E
Sbjct: 76  AERQVVIVKEAQDMSREILAQPDKSKNKLEAYAENPQPTTVLVFCYKYKKLDKRKRVYKE 135

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              S L        +  + D I   +     ++  +A  +L+  LG D     NEL+KL 
Sbjct: 136 IAKSGLIFESKKLYENQVGDWIRRVMSGKGYTVEPKAAHMLVEFLGTDLSKINNELEKLR 195

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHAL 250
               E   IT   V++ I  +      E+  A  +  +  A  + ++F  +    P    
Sbjct: 196 LILPEGSTITPLAVEENIGISKDFNNFELQRAIGEKDVVKAHRIINYFSQNPKDNPMVVT 255

Query: 251 LHGFLQKFQLLEKIH 265
           +      FQ L   H
Sbjct: 256 IALLFSFFQNLLIYH 270


>gi|308048540|ref|YP_003912106.1| DNA polymerase III, delta subunit [Ferrimonas balearica DSM 9799]
 gi|307630730|gb|ADN75032.1| DNA polymerase III, delta subunit [Ferrimonas balearica DSM 9799]
          Length = 344

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 101/292 (34%), Gaps = 14/292 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D  LI E      +           L ++       +      E  S SLF+
Sbjct: 17  PILMVFGDDV-LIREECRDALRQACYRLGAQERLSLVQESPFNWDELR--QECQSLSLFA 73

Query: 82  KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135
             ++I +E       +    VL  L E +  +  +  +++   +  ++ T  K  +    
Sbjct: 74  SSRVIELELPSLKPGTDGAAVLAELAEEL-SHQQDLWLLLHGPKAGRDQTNTKWFKALDK 132

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             L +        H    I E     Q  + ++ +  L +   G+ +A+   + +L+   
Sbjct: 133 HGLYVQALTPEGPHYQRWIAERARRHQLQLDRDGQNYLASLFEGNLLAADQAMAQLALIA 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                + ++ + + + D     + E+ +A + G I  A+ +          +  +     
Sbjct: 193 PGQ-RLNQEALAEHLQDQSRYSVFELADALLAGNIDGALKILSQLRQEGTAATLVSWAVN 251

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
           +++ LL       + +  S  ++++     +   ++ + Q  L       + 
Sbjct: 252 REWALLLGF-CAGQANGQSMAELMKAAR--VWEKRQRLYQNCLNRLGPERIS 300


>gi|187730370|ref|YP_001879350.1| DNA polymerase III subunit delta [Shigella boydii CDC 3083-94]
 gi|187427362|gb|ACD06636.1| DNA polymerase III, delta subunit [Shigella boydii CDC 3083-94]
          Length = 343

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 98/266 (36%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 54  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK    + +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRTLHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQMQLRQAVQLLTRTELTLKQ 314


>gi|224369586|ref|YP_002603750.1| HolA [Desulfobacterium autotrophicum HRM2]
 gi|223692303|gb|ACN15586.1| HolA [Desulfobacterium autotrophicum HRM2]
          Length = 420

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 102/298 (34%), Gaps = 29/298 (9%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWN--------- 72
           F+ YG +  L  +  ++    +        S  +L  ++  +                  
Sbjct: 22  FLAYG-EAFLTRKAFDKIIAALVPEERRELSYELLEGVDASLANVKERLATYSFEPLLVL 80

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIA 131
            + +  LFS      +   S  K+ +D  ++ I K  +  H +++ ++   K   L K  
Sbjct: 81  GLKNAPLFSAPTAPKVAGFS--KQEIDTFQKFIKKPFLEGHFLVVTTDTADKRRALFK-- 136

Query: 132 EKFTSVLAISC-------YPDNKIH---LMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           E     L I C         D       L  ++E +L    K I  +A  +L+   G D 
Sbjct: 137 EIKAVGLVIDCSVPKGSRQADKTQQSAILRQIMEGTLNATGKGIDGDAFAMLVDRTGFDP 196

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
               + L+KL S+  E + IT Q V+ ++  T    I E+ NA        A+      L
Sbjct: 197 STLSDNLEKLVSFIGERVSITVQDVQKVVKRTRKDAIFELTNAVCDRNAGTALFYLKSLL 256

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR--NILQES 297
            +      ++     + + L  +    E S        Q         +    +++++
Sbjct: 257 NAGFHPLQIVMALSNQLRKLVLVKFFIERSRQRGIPCWQPNSPYNRFKQHTMPMIEQA 314


>gi|309811272|ref|ZP_07705061.1| DNA polymerase III, delta subunit [Dermacoccus sp. Ellin185]
 gi|308434754|gb|EFP58597.1| DNA polymerase III, delta subunit [Dermacoccus sp. Ellin185]
          Length = 323

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 20/299 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + +  G ++ L  +   +         H    +V ++  E Q        E+ S SLF  
Sbjct: 7   IILVTGPERIL-AQRAVEESLEAITAAHPEAEVVRIDVAEYQ--PGRLTTEL-SPSLFGG 62

Query: 83  KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNN--TLRKIAEKFTSV 137
           +++I++ +       ++D LE+ +   + +  +I+  K     K     L+K        
Sbjct: 63  RRVIVVRDFDEAPDALVDELEDALKVGLDDVNLIVLHKGGNRAKRVLDALKKAKAPVIEA 122

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            AI             +       ++ I+ E  + LL   G D        ++L      
Sbjct: 123 PAIKS----DRDKSAFVMNEFRRARRRITPEGVRALLEAAGKDTSELAAACRQLVDDT-- 176

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             ++ E  V              + +AT+ G    A+ L     AS +    ++     +
Sbjct: 177 SGVVDENTVGTYHGGKVEATGFRVADATVAGNAPEALRLLRHAFASGVDPVPIVAVLASQ 236

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            + + K  +    S  S +   Q         + +  + + R W+   +   +  +   
Sbjct: 237 LRQVAK--VASAGSGRSADLAKQLGMPP---WQVDKARTASRGWDGVRLGRAIQAVAAA 290


>gi|315287066|gb|EFU46480.1| DNA polymerase III, delta subunit [Escherichia coli MS 110-3]
          Length = 331

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + ++I++
Sbjct: 42  SIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVR 101

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 102 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 161

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+    D         ++A + GK   A+ +
Sbjct: 162 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAGNDAAHFTPFHWVDALLMGKSKRALHI 220

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 221 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 276

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   +++ +R+ +  +       ++
Sbjct: 277 ALNRLSQSQLRQAVQLLTRTELTLKQ 302


>gi|227833673|ref|YP_002835380.1| DNA polymerase III, delta subunit [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454689|gb|ACP33442.1| DNA polymerase III, delta subunit [Corynebacterium aurimucosum ATCC
           700975]
          Length = 315

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 41/314 (13%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S  V +  G D+ L  E      ++          +  L A E+ +       E  S SL
Sbjct: 6   SAPVHLILGDDEFL-AERARLSIQH--------GEVTKLKASEVSEGE---ILEATSPSL 53

Query: 80  FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTL 127
           F + ++I+I ++    K+V   L +     +    +I    + +  +KK          L
Sbjct: 54  FGEDRVIVISDVERAGKEVTKILLDACANPMPGITLILLYSVTAKTLKKKKKPPELIAAL 113

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           RK AE        S YP+    L               + +  Q LL  +G D     + 
Sbjct: 114 RKTAEVHE---VFSLYPNE---LAQWATREFASHGVRPTPDVVQALLDGVGSDLRELASA 167

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L         +T + V         +   +I +A + G++  A+      L      
Sbjct: 168 ISQLVFDTGGK--VTREAVHAYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 225

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A+      K   + +++  +        +          P    + Q   R W+   + 
Sbjct: 226 VAIASALANKVGNIARLYSARGDQYSLASQTGMA------PYAVKLTQPVARRWSGENIT 279

Query: 308 ET---LHKIDHRIH 318
           +    + ++D  + 
Sbjct: 280 KAVILMTELDAAVK 293


>gi|149199485|ref|ZP_01876520.1| hypothetical protein LNTAR_01487 [Lentisphaera araneosa HTCC2155]
 gi|149137420|gb|EDM25838.1| hypothetical protein LNTAR_01487 [Lentisphaera araneosa HTCC2155]
          Length = 365

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 24/285 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSLFS 81
           +  G+D+  I     +  + +S    DPF+L V++  E +         I    S   F 
Sbjct: 7   LISGNDEARIKLKAKELVEILSEGSTDPFALEVISRQESESPDEMLKRTILSYMSPPFFG 66

Query: 82  KKKIILIENLSTEKK------------VLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            KK I +++    K+            + + +E+I      N   +I  N+  K   L K
Sbjct: 67  -KKTIWLDDFPAFKQENGTSKSATALEIRNLVEQISQFPADNINFVISGNDCDKRKALYK 125

Query: 130 IAEKFTSVLAISCYPDNKIH----LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
              K   V   +       +    +  ++ E       SI  +A   L+  LG D    +
Sbjct: 126 ACSKNGEVHLFNKPEKKNRNWQVEMTQIVREQANEMHLSIQPQALDYLVTCLGNDTQRVQ 185

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             L+ L  Y      I    V+++I            NA  +  +  A+   +  ++ + 
Sbjct: 186 PTLETLWCYANGQNPINLNQVQNVISGNEAADAWIYSNALSKRSLEIALNSLNILMSREK 245

Query: 246 PSHALLHGFLQK----FQLLEKIHIIKECSNISFEKIIQKTEKNI 286
              +L+   L +    F    +  ++ +   +     ++ T K++
Sbjct: 246 DPESLVSRLLMQASSLFHNFVQAKLVMQALKLKNSSELEATLKSV 290


>gi|293610314|ref|ZP_06692615.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827546|gb|EFF85910.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 329

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 134/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRIPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    E L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + +A+  P  
Sbjct: 181 MRVRDTFPDQQLIQIEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIAAGEPES 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L ++D  I 
Sbjct: 291 WSTLLLQVDAAIK 303


>gi|261867170|ref|YP_003255092.1| DNA polymerase III subunit delta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412502|gb|ACX81873.1| DNA polymerase III, delta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 344

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 110/312 (35%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G D  L+ E      +       D    V L+ +    + +  +  + S  LF 
Sbjct: 19  RVYFLVGEDPLLLNESAEGIYQAALQQGFD--EKVELD-INASTDWNDLFERVQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136
            K++I+++       +L   L E I     + + I +  ++ K    +            
Sbjct: 76  NKQLIILDLPENATALLQKNLSEFISLLQPDVLAIFRLAKLTKAAEKQAWFMAANQYEPQ 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + ++C   N   L   +     +   SI +EA Q+L  +   + +A +  LQ L     
Sbjct: 136 AVLVNCQTPNAEQLPRWVANRAKMLGLSIEQEAVQLLCYSYENNLLALKQTLQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   V  ++  + V    + ++A + GK   A  +        +    LL    +
Sbjct: 195 PDRKLTFARVNSVVEQSSVFTPFQWVDAILGGKGNRARRILTGLKDEDVQPIILLRTLQR 254

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311
               L +I   ++  ++       +  +      +   +R++  ++++      +     
Sbjct: 255 DLMTLLEISKPEQPQSLDSPLPTDQLREQFDRLKVWQNRRSLFTQAVQRLTYRKLYLFFQ 314

Query: 312 KIDHRIHLARKK 323
           ++      A+++
Sbjct: 315 QLADVERCAKQE 326


>gi|298369323|ref|ZP_06980641.1| DNA polymerase III, delta subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283326|gb|EFI24813.1| DNA polymerase III, delta subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 333

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 84/254 (33%), Gaps = 6/254 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E ++  +       +    +   +      + S       S  LF+
Sbjct: 17  PLYVIHGEEDLLRIEALDTLRAAAKRQGYLNREVYTADNAF---DWSELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I      K   + L+ +  +   + + ++   +++K  T  K         +
Sbjct: 74  DLKLLEIHIPGGKPGKNGGEALQSLAERLPEDTVTVVMLPKLEKAQTQAKWFGALAAKGI 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         L   I   L      I  +A  +    + G+ +A++ E+ KL+    + 
Sbjct: 134 MLEAKAVGTAALPQWIRGRLRKLGLGIESDALTLFAERVEGNLLAAKQEIDKLALLHPQG 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +     +  + +     + ++  A ++G       L +    S      LL    +  
Sbjct: 194 HTVNMADAEAAVANVARFDVFQLAGAWMKGDGLRVARLLEGLEESGEEPVLLLWAVAEDI 253

Query: 259 QLLEKIHIIKECSN 272
           + L ++    +   
Sbjct: 254 RTLIRLTAALKQGQ 267


>gi|289449692|ref|YP_003475208.1| DNA polymerase III subunit delta [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184239|gb|ADC90664.1| DNA polymerase III, delta subunit [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 346

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 113/324 (34%), Gaps = 20/324 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--NISTFWNEINSTSLF 80
           +++  G +  LI  L+ + +K       +   +   ++   +   +      +I + +  
Sbjct: 27  LYLLAGEETYLIRSLLKELQKTFISPGAEDLDVFKYDSQSSENKLSPKVLIEQIKTPAFI 86

Query: 81  SKKKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           S +++ ++         +   E++I   K++ + + ++   E K +N  +K+ +      
Sbjct: 87  SARRLFILRRTGWFNGSVPFAEQLIDMFKSLDDTVCLVFWEE-KVDNRQKKLLDAVRKYG 145

Query: 139 AISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL- 196
                       L   +       + +IS+ A + L++    D     NE+ K++ YC  
Sbjct: 146 IYGVLNRQTVQELSRWLSGFFAKYKLNISRAAAEKLISVAQSDMFTLMNEVNKITLYCQA 205

Query: 197 -EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ++E  +  +        I ++ +  + G+   AI L    L    P   +L    
Sbjct: 206 TAQTEVSEALLDLVSPPDLAGNIFQLNDTLLSGRSDRAINLLHKLLVQPQPPLLILFMLA 265

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           +  + L  +  I      +    I              L +  R  +   + + +   ++
Sbjct: 266 RHIKQLIIVKSITNREEAAAALHIPGF----------ALDKLYRQSSAYSLEKLVKIYNN 315

Query: 316 RIHLAR--KKKYLEKNIIFQTILY 337
                R  K   L++ +  + ++ 
Sbjct: 316 CYLSDRAIKNGDLDEVLALELLIT 339


>gi|294776468|ref|ZP_06741943.1| DNA polymerase III, delta subunit [Bacteroides vulgatus PC510]
 gi|294449665|gb|EFG18190.1| DNA polymerase III, delta subunit [Bacteroides vulgatus PC510]
          Length = 338

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 119/335 (35%), Gaps = 17/335 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I +  KN  +   V+   G +   I  +     + +       F+  ++  
Sbjct: 1   MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++++     K + + L   + K + + I+++  K 
Sbjct: 60  ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELVYYLQKPLDSTILVLCHKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L   AE     +           L   I   L      I  +A +++   +G
Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL          IT + ++  I  +      E+ NA +   ++ A  + 
Sbjct: 175 ADLSRMAGELEKLIITLPRGQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   +    S + I  +         ++ + 
Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPD---KSEQGIANQLGLKSSWQSKDYMV 291

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328
            ++R ++   V + + +I +    ++      L  
Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLGD 325


>gi|325297796|ref|YP_004257713.1| DNA polymerase III, delta subunit [Bacteroides salanitronis DSM
           18170]
 gi|324317349|gb|ADY35240.1| DNA polymerase III, delta subunit [Bacteroides salanitronis DSM
           18170]
          Length = 338

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 119/326 (36%), Gaps = 15/326 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I ++ KN   +  V+   G +   I  + +   + +       F+  VL  
Sbjct: 1   MAKETTYEEIVRNLKNKIYA-PVYFLMGEEDYYIDRIADYILEYVLNDSEKEFNQTVLYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++I+     K + D L   + K + + I++   K 
Sbjct: 60  ADT--DIATVINAAKRYPMMSKYQVLVIKEAQNLKNL-DELLYYLTKPMPSTILVFCYKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + K   L    E   + +           L   I   L   Q  I  +A +++   +G
Sbjct: 117 GSLDKRKKL--TVEIEKTGVVFESKKLKDTQLPGFITSYLKRRQVEIEPKASELMAEFIG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     +EL+KL          IT + ++  I  +      E+ NA I   ++ A  + 
Sbjct: 175 TDLSRMASELEKLIITLPKGQRRITPEQIERNIGISKDFNNFELRNALIAKDVFKANQIV 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   E    + + I  +     +   R+  Q
Sbjct: 235 KYFEENPKSNPLQVTLAVLFNFFSNLMLAYYAPE---KNEQGIAAQLGLRSVWQARD-YQ 290

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321
            ++R +    V + +  I      ++
Sbjct: 291 TAMRCYTGVKVMKIIEAIRQCDVRSK 316


>gi|218549785|ref|YP_002383576.1| DNA polymerase III subunit delta [Escherichia fergusonii ATCC
           35469]
 gi|218357326|emb|CAQ89963.1| DNA polymerase III, delta subunit [Escherichia fergusonii ATCC
           35469]
          Length = 343

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 92/252 (36%), Gaps = 8/252 (3%)

Query: 74  INSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLF+ ++  ++L+        + + L  +      + ++I++ N++ K        
Sbjct: 68  CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWF 127

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                  + ++C    +  L   +          +   A Q+L     G+ +A    L++
Sbjct: 128 TALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALER 187

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS     D  +T   V+  + D         ++A + GK   A+ +             L
Sbjct: 188 LSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVIL 246

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L    ++  LL  +   ++ ++     +  K    +   +R ++ E+L   ++  +R+ +
Sbjct: 247 LRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMGEALNRLSQAQLRQAV 302

Query: 311 HKIDHRIHLARK 322
             +       ++
Sbjct: 303 QLLTRTEITLKQ 314


>gi|302380749|ref|ZP_07269214.1| DNA polymerase III, delta subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311692|gb|EFK93708.1| DNA polymerase III, delta subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 332

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            ++   N  LS+ + + +G +K  I + ++  K++ +    D + L          +   
Sbjct: 6   AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55

Query: 70  FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121
            ++   +  +FS K++ILI         +S  K  +D L   I       +III S   +
Sbjct: 56  IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-----SISKEAKQILLAN 176
            K+  L+   E       I     N+      I   L   +      +I  E    L+ N
Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                I   NEL K  +  LE   ITEQ +  +I + +   I ++ ++  Q  +   I  
Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            D  +     S   LH  ++ F+ L  +  +     +S  +I +K +  I P + N +Q 
Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISPYELNKIQN 286

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323
            ++ W  + +R  +HK+       +  
Sbjct: 287 FVKNWRYDQLRFAIHKLYEVEINLKSN 313


>gi|281426107|ref|ZP_06257020.1| DNA polymerase III, delta subunit [Prevotella oris F0302]
 gi|281399683|gb|EFB30514.1| DNA polymerase III, delta subunit [Prevotella oris F0302]
          Length = 344

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 115/305 (37%), Gaps = 12/305 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +   I ++ +    N+       F+  ++   ++    S   +   +  + +
Sbjct: 25  PIYILMGEESYYIDKISDYIADNVLKPEERDFNQTIVFGSDVSA--SQIVDSAKAFPMMA 82

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +K++++++     K   + LE+     + + +++   K+  I K   +   A+     + 
Sbjct: 83  EKRVVIVKESQNLKG-TEPLEKYFKNPVPSTVLVFCHKNGSIDKRKKIIPAAQ-AGGAVI 140

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198
                  +  L   IE  L   Q ++ ++A Q++  ++G D     +EL K L S    D
Sbjct: 141 FESKKLYERELPGFIETYLRQHQATVEQKAAQMIADHVGADLNRLTSELDKVLISLPASD 200

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--HALLHGFLQ 256
             +T   V+  I  +      E+ NA +Q  IY A ++  +F  +       + L     
Sbjct: 201 RRVTPDVVEKEIGVSKDFNAFELRNAIVQRDIYKANLIIKYFDNNPKAGSLFSFLPMLFS 260

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F+ L         +N +      +         R+ +   +R ++     + + KI   
Sbjct: 261 YFENLMIAFYSPNKNNENAVAEFLELRNG--WAARDYIT-GMRNYSGMKTMQIISKIREI 317

Query: 317 IHLAR 321
              ++
Sbjct: 318 DAKSK 322


>gi|312171715|emb|CBX79973.1| DNA polymerase III, delta subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 343

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 104/292 (35%), Gaps = 15/292 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  L+ E  +  +          F+  V  ALEI  +    ++   + SLF+ +
Sbjct: 21  YLLSGNEPLLLQEAQDAIRAAAQQQG---FTEHVSVALEIGTDWQEIFSACQALSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138
           + +L+          + + L  +      + ++I+++  + K   N+   K      + +
Sbjct: 78  QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRTTRLTKAQENSAWYKAF--SANAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A+ C       L   +         ++   A Q+L     G+ +A    L++LS     D
Sbjct: 136 AVPCQTPEHGQLPRWVTMRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+  + D         ++A + GK   A+ +     A       LL    +  
Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDSEPVILLRTLQRDL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            LL  +             +  +    +   +R +  E+L+      + + +
Sbjct: 255 LLLLTLQRQMAY--TPLRTLYDRHR--VWQNRRALFAEALQRLTATRLAKAI 302


>gi|258544721|ref|ZP_05704955.1| DNA polymerase III, delta subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258520040|gb|EEV88899.1| DNA polymerase III, delta subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 336

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 106/256 (41%), Gaps = 15/256 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + YGS+  L  E ++  +       +D    +  ++      I +   E+ + SLF+ 
Sbjct: 20  VTLIYGSEALLNSEALDAARARALADGYDERQRLYGDSR-----IDSLIQELETPSLFAP 74

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL---RKIAEKFT-S 136
           K+++ +      T+K   D L  +    + N  +II +  + K +T    + +  +   +
Sbjct: 75  KRLLELHLDAKKTDKATSDILRRLAELRLENSRLIIFAPNLDKPHTTAWYKALFSQGNLA 134

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           + + + YP         I + L   +  +++ A ++L+AN  G+  A++  +++L+ +  
Sbjct: 135 IASAALYP---PQFAKQIAQRLQAAKLRLTEAAYELLVANCQGNLFAAKQAIERLTIHPQ 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL- 255
              +I +  + +++ D        + +A +      A  +A    A       L+   L 
Sbjct: 192 AQNIIDDTLLTELLDDFSQFNTFALSDAILGADWPKAHRIAARLQAENPRDTTLITWLLQ 251

Query: 256 QKFQLLEKIHIIKECS 271
           +   LL  +H   + S
Sbjct: 252 RDASLLIGLHNEAQNS 267


>gi|22125085|ref|NP_668508.1| DNA polymerase III subunit delta [Yersinia pestis KIM 10]
 gi|45440935|ref|NP_992474.1| DNA polymerase III subunit delta [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108808482|ref|YP_652398.1| DNA polymerase III subunit delta [Yersinia pestis Antiqua]
 gi|108811257|ref|YP_647024.1| DNA polymerase III subunit delta [Yersinia pestis Nepal516]
 gi|145599908|ref|YP_001163984.1| DNA polymerase III subunit delta [Yersinia pestis Pestoides F]
 gi|149365491|ref|ZP_01887526.1| DNA polymerase III, delta subunit [Yersinia pestis CA88-4125]
 gi|153947907|ref|YP_001401890.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis IP
           31758]
 gi|162418671|ref|YP_001606331.1| DNA polymerase III subunit delta [Yersinia pestis Angola]
 gi|165925170|ref|ZP_02221002.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937599|ref|ZP_02226161.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008587|ref|ZP_02229485.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212472|ref|ZP_02238507.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399368|ref|ZP_02304892.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422511|ref|ZP_02314264.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423810|ref|ZP_02315563.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468418|ref|ZP_02333122.1| DNA polymerase III, delta subunit [Yersinia pestis FV-1]
 gi|170025238|ref|YP_001721743.1| DNA polymerase III subunit delta [Yersinia pseudotuberculosis
           YPIII]
 gi|218929689|ref|YP_002347564.1| DNA polymerase III subunit delta [Yersinia pestis CO92]
 gi|229838154|ref|ZP_04458313.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895946|ref|ZP_04511116.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides A]
 gi|229898735|ref|ZP_04513880.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901494|ref|ZP_04516616.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516]
 gi|270489680|ref|ZP_06206754.1| DNA polymerase III, delta subunit [Yersinia pestis KIM D27]
 gi|294504412|ref|YP_003568474.1| DNA polymerase III subunit delta [Yersinia pestis Z176003]
 gi|21957939|gb|AAM84759.1|AE013721_7 DNA polymerase III, delta subunit [Yersinia pestis KIM 10]
 gi|45435794|gb|AAS61351.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774905|gb|ABG17424.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516]
 gi|108780395|gb|ABG14453.1| DNA polymerase III, delta subunit [Yersinia pestis Antiqua]
 gi|115348300|emb|CAL21231.1| DNA polymerase III, delta subunit [Yersinia pestis CO92]
 gi|145211604|gb|ABP41011.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides F]
 gi|149291904|gb|EDM41978.1| DNA polymerase III, delta subunit [Yersinia pestis CA88-4125]
 gi|152959402|gb|ABS46863.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351486|gb|ABX85434.1| DNA polymerase III, delta subunit [Yersinia pestis Angola]
 gi|165914349|gb|EDR32964.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922777|gb|EDR39928.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992969|gb|EDR45270.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206403|gb|EDR50883.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958525|gb|EDR55546.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051872|gb|EDR63280.1| DNA polymerase III, delta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057980|gb|EDR67726.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751772|gb|ACA69290.1| DNA polymerase III, delta subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|229681423|gb|EEO77517.1| DNA polymerase III, delta subunit [Yersinia pestis Nepal516]
 gi|229688283|gb|EEO80354.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694520|gb|EEO84567.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700869|gb|EEO88898.1| DNA polymerase III, delta subunit [Yersinia pestis Pestoides A]
 gi|262366398|gb|ACY62955.1| DNA polymerase III subunit delta [Yersinia pestis D182038]
 gi|270338184|gb|EFA48961.1| DNA polymerase III, delta subunit [Yersinia pestis KIM D27]
 gi|294354871|gb|ADE65212.1| DNA polymerase III subunit delta [Yersinia pestis Z176003]
 gi|320016189|gb|ADV99760.1| DNA polymerase III, delta subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 344

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 103/273 (37%), Gaps = 12/273 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKK-NISITYHDPFSLVVLN 59
           M  I   + + +  + L   +   +  G++  L+ E  +  ++      + + FS   L+
Sbjct: 1   MIRIYPEQLVAQLHEGLRACY---LLCGNEPLLLQESQDHIRRVASQHDFTEHFSFA-LD 56

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           A    ++I +      + SLF+ ++ +L+   +      + + L ++      + ++I++
Sbjct: 57  AHTEWEHIFSL---CQALSLFASRQTLLLSFPDSGLTAPISEQLVKLSGLLHPDILLILR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           +N++ K        +    + + +SC    +  L   +         ++   A Q+L   
Sbjct: 114 ANKLTKAQENSAWFKALSKNGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A  +
Sbjct: 174 YEGNLLALSQALERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
                        LL    ++  LL  +    E
Sbjct: 233 LQQLQQEDSEPVILLRTVQRELLLLLALKRQME 265


>gi|262184678|ref|ZP_06044099.1| hypothetical protein CaurA7_11844 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 312

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 41/314 (13%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           S  V +  G D+ L  E      ++          +  L A E+ +       E  S SL
Sbjct: 3   SAPVHLILGDDEFL-AERARLSIQH--------GEVTKLKASEVSEGE---ILEATSPSL 50

Query: 80  FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTL 127
           F + ++I+I ++    K+V   L +     +    +I    + +  +KK          L
Sbjct: 51  FGEDRVIVISDVERAGKEVTKILLDACANPMPGITLILLYSVTAKTLKKKKKPPELIAAL 110

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           RK AE        S YP+    L               + +  Q LL  +G D     + 
Sbjct: 111 RKTAEVHE---VFSLYPNE---LAQWATREFASHGVRPTPDVVQALLDGVGSDLRELASA 164

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L         +T + V         +   +I +A + G++  A+      L      
Sbjct: 165 ISQLVFDTGGK--VTREAVHAYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 222

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A+      K   + +++  +        +          P    + Q   R W+   + 
Sbjct: 223 VAIASALANKVGNIARLYSARGDQYSLASQTGMA------PYAVKLTQPVARRWSGENIT 276

Query: 308 ET---LHKIDHRIH 318
           +    + ++D  + 
Sbjct: 277 KAVILMTELDAAVK 290


>gi|299141934|ref|ZP_07035069.1| DNA polymerase III, delta subunit [Prevotella oris C735]
 gi|298576785|gb|EFI48656.1| DNA polymerase III, delta subunit [Prevotella oris C735]
          Length = 344

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 115/305 (37%), Gaps = 12/305 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +   I ++ +    N+       F+  ++   ++    S   +   +  + +
Sbjct: 25  PIYILMGEESYYIDKISDYIADNVLKPEERDFNQTIVFGSDVSA--SQIVDSAKAFPMMA 82

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +K++++++     K   + LE+     + + +++   K+  I K   +   A+     + 
Sbjct: 83  EKRVVIVKESQNLKG-TEPLEKYFKNPVPSTVLVFCHKNGSIDKRKKIIPAAQ-AGGAVI 140

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198
                  +  L   IE  L   Q ++ ++A Q++  ++G D     +EL K L S    D
Sbjct: 141 FESKKLYERELPGFIETYLRQHQATVEQKAAQMIADHVGADLNRLTSELDKVLISLPASD 200

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--HALLHGFLQ 256
             +T   V+  I  +      E+ NA +Q  IY A ++  +F  +       + L     
Sbjct: 201 RRVTPDVVEKEIGVSKDFNAFELRNAIVQRDIYKANLIIKYFDNNPKAGSLFSFLPMLFS 260

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F+ L         +N +      +         R+ L   +R ++     + + KI   
Sbjct: 261 YFENLMIAFYSPNKNNENAVAEFLELRNG--WAARDYLT-GMRNYSGMKTMQIISKIREI 317

Query: 317 IHLAR 321
              ++
Sbjct: 318 DAKSK 322


>gi|168334018|ref|ZP_02692237.1| DNA polymerase III, delta subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 323

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 13/268 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG+++ L  + I + K       +D  + V         N+ T  +E  +   F+ K
Sbjct: 5   YLIYGNEEYLKTQQIQKLKAATVSD-NDVMNFVTFAGPTC--NVETIIDEGETLPFFNAK 61

Query: 84  KIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           K ILI+         K   D L + +        ++    ++ K N L K      S   
Sbjct: 62  KFILIKESGLFAPGRKDASDRLSDWLKIFPDYICMVFSETQVDKRNKLYKTLITVGSAQE 121

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
              +      L  +I +        I K      ++ +  +   +  E +KL +YC    
Sbjct: 122 FD-FVTEAQML-SIINKEFH--NPPIEKNVFSYFISRMPKNVGYTLLEFEKLLAYCCHSP 177

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT   +  I   T    I ++     Q    +AI L    +A K    A+L      ++
Sbjct: 178 -ITIAAIDKICTITLEQKIFDLFTKIAQQDSTSAIALYHHLVAQKESPIAMLALIATNYR 236

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNII 287
            + +I  +    + +  +I  +    I 
Sbjct: 237 NIFQIKDLARLKH-TPYQISHQLGLPIY 263


>gi|189461368|ref|ZP_03010153.1| hypothetical protein BACCOP_02023 [Bacteroides coprocola DSM 17136]
 gi|189431897|gb|EDV00882.1| hypothetical protein BACCOP_02023 [Bacteroides coprocola DSM 17136]
          Length = 338

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 112/317 (35%), Gaps = 13/317 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I ++ KN   S  ++   G +   I  + +    ++       F+  VL  
Sbjct: 1   MAKETTYEEIVRNIKNKVYS-PIYFLMGEEDYYIDRIADYIMDSVLNETEKEFNQTVLYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++++     K + D L   + K + + I++I  K 
Sbjct: 60  ADT--DIATIINGAKRYPMMSKYQVLVVKEAQNLKNL-DELVYYLQKPMPSTILVICYKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L   AE   + +           L   I   L   Q  I  +A +++   +G
Sbjct: 117 GSLDRRKKL--TAEIEKTGVLFESKKLKDAQLPGFIASYLKRKQVEIEPKAAEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL          IT + ++  I  +      E+ NA I   I  A  + 
Sbjct: 175 TDLNRMAGELEKLIITLPSGQKRITPEQIERNIGISKDYNNFELRNALIAKDILKANQIV 234

Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
           ++F  + K     +    L  F     +                          ++ +  
Sbjct: 235 NYFEENPKNNPLQVTLAVLFNFYANLMLAYYAPEKTEQGIAAQLGLRSP--WQAKDYML- 291

Query: 297 SLRIWNKNLVRETLHKI 313
           ++R +    V + +  I
Sbjct: 292 AMRRYTGVKVMQIIGAI 308


>gi|238762877|ref|ZP_04623845.1| DNA polymerase III subunit delta [Yersinia kristensenii ATCC 33638]
 gi|238698888|gb|EEP91637.1| DNA polymerase III subunit delta [Yersinia kristensenii ATCC 33638]
          Length = 315

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 98/260 (37%), Gaps = 10/260 (3%)

Query: 74  INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLF+ ++ +L+   +      + + L ++      + ++I+++N++ K        
Sbjct: 39  CQALSLFASRQTLLLSFPDSGLTAPMNEQLVKLSSLLHPDILLILRANKLTKAQENSAWF 98

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +    + + +SC    +  L   +          +   A Q+L     G+ +A    L++
Sbjct: 99  KALSQNGVFVSCQTPEQAQLPRWVSARAKNLNLEVDDAAVQLLCYCYEGNLLALSQALER 158

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS     D  +T   V+  + D         ++A + GK   A  +             L
Sbjct: 159 LSL-LYPDGKLTLPKVEHAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPVIL 217

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L    ++  LL  +    E   +    +  + +  +   +R ++ ++L+  +   ++  +
Sbjct: 218 LRTLQRELLLLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMQQLQHAV 273

Query: 311 HKIDHRIHLARKKKYLEKNI 330
           H +       R K+   ++I
Sbjct: 274 HLLAQI--EVRLKQDYGQSI 291


>gi|224025859|ref|ZP_03644225.1| hypothetical protein BACCOPRO_02601 [Bacteroides coprophilus DSM
           18228]
 gi|224019095|gb|EEF77093.1| hypothetical protein BACCOPRO_02601 [Bacteroides coprophilus DSM
           18228]
          Length = 338

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 117/326 (35%), Gaps = 15/326 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I ++ KN   S  V+   G +   I  + +     +       F+L +L  
Sbjct: 1   MAKETTYEEIARNLKNKIYS-PVYFLMGEEDYYIDRISDYIMDTVLTETEKEFNLTLLYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I +  N      + SK +++++      K + D L   + K + + I+++  K 
Sbjct: 60  SDT--DIVSIINAARRYPMMSKYQVVIVREAQNLKNL-DELIHYLQKPMSSTILVMCYKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   +    EK   +       D +  L   I   L   Q  I  +A +++   +G
Sbjct: 117 GTLDRRKKITAELEKAGVLFESKKLKDTQ--LPGFISSYLKRKQVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL          IT + ++  I  +      E+ NA I+  ++ A  + 
Sbjct: 175 TDLNRMAGELEKLIITLPAGQKRITAEQIERNIGISKDYNNFELRNALIEKDVFKANQIV 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   + S+      +           ++ + 
Sbjct: 235 KYFEDNPKNNPLQVTLAVLFNFFSNLMLAYYAPDKSDQGIASQLGLRSP---WQAKDYMA 291

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321
             +R +    V + +  I      ++
Sbjct: 292 -GMRKYTGVKVMQIIGAIRTCDAKSK 316


>gi|299771582|ref|YP_003733608.1| DNA polymerase III, delta subunit [Acinetobacter sp. DR1]
 gi|298701670|gb|ADI92235.1| DNA polymerase III, delta subunit [Acinetobacter sp. DR1]
          Length = 329

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 133/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K    +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRTPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNEHNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    + L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEADKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + +A+  P  
Sbjct: 181 MRVRDTFPDQQLIQIEQLYACLQDQSRYTTYDLSDALLEGNLGQSIKIFQYLIAAGEPDS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L +ID  I 
Sbjct: 291 WSTLLLQIDAAIK 303


>gi|150005816|ref|YP_001300560.1| hypothetical protein BVU_3312 [Bacteroides vulgatus ATCC 8482]
 gi|254882004|ref|ZP_05254714.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640989|ref|ZP_07995696.1| hypothetical protein HMPREF9011_01293 [Bacteroides sp. 3_1_40A]
 gi|149934240|gb|ABR40938.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254834797|gb|EET15106.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387367|gb|EFV68239.1| hypothetical protein HMPREF9011_01293 [Bacteroides sp. 3_1_40A]
          Length = 338

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 125/346 (36%), Gaps = 18/346 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I +  KN  +   V+   G +   I  +     + +       F+  ++  
Sbjct: 1   MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++++     K + + L   + K + + I+++  K 
Sbjct: 60  ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELVYYLQKPLDSTILVLCHKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L   AE     +           L   I   L      I  +A +++   +G
Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL          IT + ++  I  +      E+ NA +   ++ A  + 
Sbjct: 175 ADLSRMAGELEKLIITLPRGQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   +    S + I  +         ++ + 
Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPD---KSEQGIANQLGLKSSWQSKDYMV 291

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338
            ++R ++   V + + +I +    ++      L   +++ + +  I
Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLGDGDLLRELVYKI 336


>gi|326319244|ref|YP_004236916.1| DNA polymerase III subunit delta [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376080|gb|ADX48349.1| DNA polymerase III, delta subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 350

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 98/301 (32%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ +G +  L  E  +  + +     +   S   +       + S       S SLF
Sbjct: 17  RPLYVIHGDEPLLQQEAADAIRASAREQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+++ I   +    K     L++I      N   + ++    + K             
Sbjct: 75  ADKQVVEIRIPSGKPGKDGGAALQQIAASAAGNEGTLTLVMLPRLDKATRTGAWFSALDR 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190
             +++   P  +  L   I + L +  + ++         Q     + G+ +A+  E+QK
Sbjct: 135 EGVSVQIDPVERGVLPQWIAQRLAVQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        ++   V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPPGELSWSQVEAAVLNVARYDVFKLSEAVLSGQVARMQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + L+++             + +     +   K  + +  +  ++       L
Sbjct: 254 HWTLAEDIRSLKRVKDAVNAGKPLPMALRENR---VWGTKERLFERIVPRFSDAAASRLL 310

Query: 311 H 311
            
Sbjct: 311 Q 311


>gi|91785201|ref|YP_560407.1| DNA polymerase III subunit delta [Burkholderia xenovorans LB400]
 gi|91689155|gb|ABE32355.1| DNA polymerase III, delta subunit [Burkholderia xenovorans LB400]
          Length = 372

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 109/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K+  D L+ +      + + +I    +             +   +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKALAAAVNDDVLTMITLPRLDAATQKSAWFTALSDAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V+D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  + + L
Sbjct: 255 VEEVRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVSEGTLEKAL 307


>gi|332532448|ref|ZP_08408326.1| DNA polymerase III delta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038091|gb|EGI74538.1| DNA polymerase III delta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 345

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 101/248 (40%), Gaps = 17/248 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVV-LNALEIQKNISTFWNEINST 77
             ++ +G +     + + Q +        D    F+L+   +  EI         +  S 
Sbjct: 18  PFYLVFGEEPFQEAQCVQQIRDCAKQQGFDEVIKFTLMQGFDWQEIIA-------QYQSM 70

Query: 78  SLFSKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK- 133
           SLFS + II + +L+ +K  +   +  ++++     + I+I+K  +  +        +  
Sbjct: 71  SLFSARTIIEL-DLNQQKPGVIGSNTFKKVVELVNPDTILIVKGAKASQEVQRGAWFKAL 129

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               + + CYP    H+   ++E       ++  +AK  L+    G+ +A   EL+KLS 
Sbjct: 130 DKLGVFVPCYPLTGSHVKRWLDEQCQRLSLNMQSDAKVSLINATEGNLLACFQELEKLSL 189

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               + LIT+Q V   + +     I ++ +A + G    AI + +   +      ++L  
Sbjct: 190 -LHGNALITQQLVMQGLLNQAKFDIFDLSDALLNGHAKQAIKVLNKLASDNTEVVSILWA 248

Query: 254 FLQKFQLL 261
             ++   L
Sbjct: 249 ITKELNTL 256


>gi|328957261|ref|YP_004374647.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4]
 gi|328673585|gb|AEB29631.1| DNA polymerase III subunit delta [Carnobacterium sp. 17-4]
          Length = 253

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 3/251 (1%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           LE  +     +  ++  +   K +   +       +   I     ++  +   I++++  
Sbjct: 4   LESYLTHPSESTTLVFFAPYEKLDERKKITKLLKKTATIIEVNALSEKDMRKYIKDTIAN 63

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
            +   S EA ++ +         +  EL KL  Y  +   IT   V++++  +    I  
Sbjct: 64  EEYRYSPEAFELFIQLTDAKLSVAMGELPKLFIYAQDTKFITLDAVQELVAKSLEQNIFA 123

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           +    ++  +  A+ L    L  K     +      +F+LL ++ I+ E        I +
Sbjct: 124 LNEYVLKKDVGQALNLYQDLLLQKEDPIKINAIMTSQFRLLIQVKIL-EKKGYQQGDIAK 182

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
           + +    P +  +  + +R   ++ + E  + +    +  +  K  ++      +L  AQ
Sbjct: 183 QLK--THPYRVKLAIQQMRKIEEHSLIEAYNGLIDAEYRLKTGKGDKEMQFELFVLQYAQ 240

Query: 341 TACKNNNFYKR 351
               N + YKR
Sbjct: 241 KKATNRDQYKR 251


>gi|325124513|gb|ADY84036.1| putative DNA polymerase III, delta subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 329

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 134/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRIPEARGAWILHGQEPLLEQNLLDAFRKSWQQQ---EVERQRYDISSV-SDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   L  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDANGLKQLKSYIQHNETNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+A+ + YP ++  ++    E L   +  +  +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVALTANYPQDRQRILSAEAEKL---EIQLDNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++     +  LI  + +   + D       ++ +A ++G +  +I +  + +A+  P  
Sbjct: 181 MRVRDTFPDQQLIQTEQLYACLQDQSRYTTYDLSDALLEGNLAQSIKIFQYLIAAGEPES 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K ++ Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNALQLGIWKTKVSLYQQALRRLNPQQFLG 290

Query: 307 -RETLHKIDHRIH 318
               L ++D  I 
Sbjct: 291 WSTLLLQVDAAIK 303


>gi|311107994|ref|YP_003980847.1| DNA polymerase III subunit delta [Achromobacter xylosoxidans A8]
 gi|310762683|gb|ADP18132.1| DNA polymerase III, delta subunit [Achromobacter xylosoxidans A8]
          Length = 351

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 108/302 (35%), Gaps = 21/302 (6%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           + +Q+    L     ++   G +  L+ E ++  +       +     +V++A   + + 
Sbjct: 12  EHLQRPGNRLA---PLYTVSGDEPLLVTEAVDALRAAARNAGYSERLSMVMDA---RSDW 65

Query: 68  STFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKN----ICNHIIIIKSNEI 121
           S+      S SLF  ++I  I I      K   D L ++  +       + +++I    +
Sbjct: 66  SSVTAATQSVSLFGDRRILEIKIPTGKPGKSGADTLAKLAEQAEKQADPDTLVLIALPRL 125

Query: 122 KK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
            K    +   +   +   ++ I+     +  L   +   L    +       Q +   + 
Sbjct: 126 DKATRESRWVQALNRGGMMVDIA--NIERGRLPAWVGMRLARQNQRADSATLQWMADKVE 183

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A+  E+QKL      +  +  + V+  + +     +  + +A + G I   I + D
Sbjct: 184 GNLLAAHQEIQKLGL-LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDIGRTIRMID 242

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A       +L    ++ +LL ++             ++++    I      +  ++L
Sbjct: 243 GLRAEGEALPLVLWAVGEEIRLLARV-AEARTLGQDVNGLMRRLR--IFGAHERLALQAL 299

Query: 299 RI 300
             
Sbjct: 300 GR 301


>gi|307730977|ref|YP_003908201.1| DNA polymerase III subunit delta [Burkholderia sp. CCGE1003]
 gi|307585512|gb|ADN58910.1| DNA polymerase III, delta subunit [Burkholderia sp. CCGE1003]
          Length = 372

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 107/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG ++ L  E  ++ +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEQLLAQEACDRIRAAARAAGFTDRSVFTVERSF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLA 139
           ++++   I +    K+  D L+ +      + + +I    +               + +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKSLAASVNDDVLTMITLPRLDAATQKSAWFTALADAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G +     + D           +L   
Sbjct: 195 LYPAGSLSFEQVHDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAVVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L    +  + + L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVTEGSLEKAL 307


>gi|72383083|ref|YP_292438.1| DNA polymerase III subunit delta [Prochlorococcus marinus str.
           NATL2A]
 gi|72002933|gb|AAZ58735.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 342

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 116/302 (38%), Gaps = 27/302 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G+D       I +   ++  +    F+   L+  + ++N      E  S  L S
Sbjct: 2   PIHLIWGNDYEACNREIEELINSVIDSSWKSFNYSQLDGNDPKQN-LRALEEAQSAPLGS 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
             +I+L+            L   + +         H+I+  +N+  K     K+ EK   
Sbjct: 61  GGRIVLVRRSPFCNGCSIELGNKLEQVIKLIPDKTHLILSNANKPDKRLKTTKLIEKSIQ 120

Query: 137 VLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                     I   P +     +L++ +L      ++ E   +++ ++G D      ELQ
Sbjct: 121 SNTLSQEKSFILPLPWDINGQRNLVKNNLERLNLKMNYETIDLIVESIGNDSSLINTELQ 180

Query: 190 KLSSYCL---------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           KLS +           +   I+++ VK +I +     + EI N+ ++G+   A+      
Sbjct: 181 KLSLFSEAVNTNLTTDKPREISKELVKKLIQNNSTNAL-EIANSLLKGEKIIALNKIQSL 239

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQE 296
           L +  P+  L+     + +    +H++    N   ++I +       K I  +++ I  +
Sbjct: 240 LKNGEPALRLITTLTGQSRGWLWVHLLDSQGNQDVKEIAKLAGIANPKRIFVIRKQIQGK 299

Query: 297 SL 298
           SL
Sbjct: 300 SL 301


>gi|294637505|ref|ZP_06715791.1| DNA polymerase III, delta subunit [Edwardsiella tarda ATCC 23685]
 gi|291089337|gb|EFE21898.1| DNA polymerase III, delta subunit [Edwardsiella tarda ATCC 23685]
          Length = 344

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 96/298 (32%), Gaps = 17/298 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +   G++  LI E ++  ++       D    V L+      +    +++  S SLF+ +
Sbjct: 21  YFILGNEPLLIQESLDLIQQRARTLGFDEHYSVTLDPHT---DWEALFSQSQSLSLFASR 77

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF------TSV 137
           +I+ +     +  V   + E + +        +           R               
Sbjct: 78  QILTL--TLPDNGVNAAMGERLTQLAGLLHPDLLLLLRGPR-PTRAQENAAWYKQLSAQA 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             ISC    +  L   +       Q  + + A Q+L     G+ +A    L +L+     
Sbjct: 135 TLISCQTPEQAQLPRWVANRARQMQLQLDEAALQLLCYCYEGNLLALAQALGRLAL-LYP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A +  +   A  +             LL    ++
Sbjct: 194 DGRLTLPRVEQAVNDAAHFSPFHWVDACLAARAKRAWHILSQLRQEGCEPVVLLRTVQRE 253

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
              L  + + +         +  + +  +   +R +L ++L+      + + +  +  
Sbjct: 254 V--LLLLQLKRASQQTPLRTLFDRHK--VWQNRRPLLTQALQNLALPQLYQAVALLSQ 307


>gi|323967587|gb|EGB63003.1| DNA polymerase III [Escherichia coli M863]
 gi|327254324|gb|EGE65946.1| DNA polymerase III, delta subunit [Escherichia coli STEC_7v]
          Length = 343

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 99/266 (37%), Gaps = 8/266 (3%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
           +++   + +  ++   + SLF+ ++  ++L+        + + L  +      + +++++
Sbjct: 54  SIDPNTDWNAVFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLVVR 113

Query: 118 SNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N++ K               + ++C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ E
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRGMMSE 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L   ++  +R+ +  +       ++
Sbjct: 289 ALNRLSQPQLRQAVQLLTRTELTLKQ 314


>gi|187478982|ref|YP_787006.1| DNA polymerase III subunit delta [Bordetella avium 197N]
 gi|115423568|emb|CAJ50104.1| DNA polymerase III, delta subunit [Bordetella avium 197N]
          Length = 349

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 14/285 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++   G +  L+ E  +  +       +   + +V++A   + + S       + SLF  
Sbjct: 22  LYTLSGDEPLLVIEAGDALRAAARQAGYTDRTTLVMDA---RGDWSAVLAATQTVSLFGD 78

Query: 83  KKI--ILIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           + +  I I      K   D L  +  +         ++++    + +     K A     
Sbjct: 79  RSLLEIKIPTGKPGKTGADTLIRLAEQAGRQTQAETLVVVSLPRLDRATRESKWALALAR 138

Query: 137 VLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
              I+  P   +  L   I   L    + +     Q +   + G+ +A+  E+ KL    
Sbjct: 139 SGVIAEIPTIERARLPAWIGARLARQNQRVDGATLQWMADKVEGNLLAAHQEILKLGL-L 197

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             +  +    V+  + +     +  + +A + G I   + + D   A       +L    
Sbjct: 198 YPEGELAADDVERAVLNVARYDVFGLRDAMLAGDIGRTVRMLDGLRAEGEALPLVLWAVG 257

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           ++ +LL +I             ++++    I      +  ++L  
Sbjct: 258 EEIRLLARI-AQARQQKQDVGALMRRLR--IFGAHERLALQALGR 299


>gi|226952883|ref|ZP_03823347.1| DNA polymerase III delta subunit [Acinetobacter sp. ATCC 27244]
 gi|294649287|ref|ZP_06726722.1| DNA polymerase III delta subunit [Acinetobacter haemolyticus ATCC
           19194]
 gi|226836394|gb|EEH68777.1| DNA polymerase III delta subunit [Acinetobacter sp. ATCC 27244]
 gi|292824840|gb|EFF83608.1| DNA polymerase III delta subunit [Acinetobacter haemolyticus ATCC
           19194]
          Length = 331

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +      +    +N +
Sbjct: 10  KRVAEARGAWIMHGQEPLLEQNLLDAFRKSWQEQ---EVERQRYDISS-ANDWKNVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   +  L+  I  N  N ++I+     S+ +K  +   +
Sbjct: 66  NSLSLFSQQLAIEVHGNVKPDANGIKQLKSYIQHNEHNLLLIVLPKQDSSSLK--SAFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E    V+ + + YP ++  ++ +  E L      ++ +A Q L+ +   + +A++N L
Sbjct: 124 VVEANGVVVPLTANYPQDRQRILTIEAEKL---GIQLNNDAWQWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            +++    +   I  + +   + D       ++ +A + G +  ++ +  + +A+  P  
Sbjct: 181 MRVADTFPDIQQIQIEQLYACLQDQSRYTTYDLSDALLLGNLAQSVKIYQYLIAAGEPDS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV-- 306
            +L    ++ +LL ++          FE+     +  I   K +  Q++LR  N      
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPHNAIQLGIWKTKVSQYQQALRRLNPRQFLT 290

Query: 307 -RETLHKIDHRIH 318
             + L +ID  I 
Sbjct: 291 WSDLLLRIDAAIK 303


>gi|223986214|ref|ZP_03636232.1| hypothetical protein HOLDEFILI_03542 [Holdemania filiformis DSM
           12042]
 gi|223961828|gb|EEF66322.1| hypothetical protein HOLDEFILI_03542 [Holdemania filiformis DSM
           12042]
          Length = 279

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 107/286 (37%), Gaps = 18/286 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YGS+     +         +   +   + VV  A      +     +  +   F++K
Sbjct: 3   YLLYGSET-YRLKKKLDELLKANDPENTGMNTVVYEAGNADFQLRAVLEDAWTIPFFAEK 61

Query: 84  KIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKF 134
           K +++ N        S  +K    LE+ +  +  +  +I   +   + +   L K+A   
Sbjct: 62  KTVVVRNPVFLTTSGSLNEKDGKALEDYLNHSCPSTDLIFCGEFESLDQRKKLVKLA--V 119

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +    +    ++      + + L   Q  +S+EA   L+  L  D  +   EL KL+ +
Sbjct: 120 KTCRVFTMKRLDEREFRSYVNQQLSAHQLILSREAMDELMQRLPLDLESFHQELIKLTLF 179

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 I+   +  ++       +  ++NA I   +  A+ L     +       L+   
Sbjct: 180 ---GTKISRDDIVHLVSRPLDEDVFHLVNAVITHDLKQAMHLWHDLDSLNKDPIYLVALL 236

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             +F+L+ ++ ++ +   +S   I Q+ +  + P +     E++  
Sbjct: 237 ASQFRLMAQVRMLSDR-RMSESMIAQQLK--VHPFRVKKAHEAVAR 279


>gi|265753570|ref|ZP_06088925.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235284|gb|EEZ20808.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_33FAA]
          Length = 338

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 123/334 (36%), Gaps = 15/334 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I +  KN  +   V+   G +   I  +     + +       F+  ++  
Sbjct: 1   MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++++     K + + L   + K + + I+++  K 
Sbjct: 60  ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELAYYLQKPLDSTILVLCHKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L   AE     +           L   I   L      I  +A +++   +G
Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL      E   IT + ++  I  +      E+ NA +   ++ A  + 
Sbjct: 175 ADLSRMAGELEKLIITLPREQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234

Query: 238 DFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +F  + K     +    L  F L   + +     + S + I  +         ++ +  
Sbjct: 235 KYFEENPKTNPLQMTLSVL--FNLFSNLMLAYYAPDKSEQGIANQLGLKSPWQSKDYMA- 291

Query: 297 SLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328
           ++R ++   V + + +I +    ++      LE 
Sbjct: 292 AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLED 325


>gi|212693177|ref|ZP_03301305.1| hypothetical protein BACDOR_02684 [Bacteroides dorei DSM 17855]
 gi|237709918|ref|ZP_04540399.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725413|ref|ZP_04555894.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212664282|gb|EEB24854.1| hypothetical protein BACDOR_02684 [Bacteroides dorei DSM 17855]
 gi|229436100|gb|EEO46177.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456011|gb|EEO61732.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 338

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 119/335 (35%), Gaps = 17/335 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I +  KN  +   V+   G +   I  +     + +       F+  ++  
Sbjct: 1   MAKETTYEEIARELKN-RIYKPVYYLMGEESYYIDRISEYIAQTVLNENEKEFNQTIVYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +I+T  N      + SK ++++++     K + + L   + K + + I+++  K 
Sbjct: 60  ADT--DIATVINAAKRYPMMSKYQVVIVKEAQNIKNI-EELAYYLQKPLDSTILVLCHKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + +   L   AE     +           L   I   L      I  +A +++   +G
Sbjct: 117 GTLDRRKKL--AAEIEKVGVLFESKKIKDAQLPGFISSYLKRRSVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL      E   IT + ++  I  +      E+ NA +   ++ A  + 
Sbjct: 175 ADLSRMAGELEKLIITLPREQKRITPEQIERNIGISKDYNNFELRNALVAKDVFKANQII 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   + S       +           ++ + 
Sbjct: 235 KYFEENPKTNPLQMTLSVLFNFFSNLMLAYYAPDKSEQGIANQLGLKSP---WQSKDYMA 291

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK 328
            ++R ++   V + + +I +    ++      LE 
Sbjct: 292 -AMRKYSGVKVMQIIGEIRYCDAKSKGVGNPSLED 325


>gi|149371264|ref|ZP_01890750.1| hypothetical protein SCB49_10237 [unidentified eubacterium SCB49]
 gi|149355402|gb|EDM43961.1| hypothetical protein SCB49_10237 [unidentified eubacterium SCB49]
          Length = 335

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 22/304 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  + +   +N+       F+ VVL   ++   I           + +
Sbjct: 20  PIYFLMGEEPYYIDAISDFIAENVLTEDERGFNQVVLYGRDVS--IDDIVGNAKRYPMMA 77

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +K+++++       + ++ L           ++++  K  ++     L K  +K + +  
Sbjct: 78  EKQVVIVREAQDLSRTIENLVAYAENPQPTTVLVMCYKYKKLDARKKLSKTLKKNSVLFE 137

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                DN+  + + I + L     +I+ +A Q+L+  LG D     NEL+KL        
Sbjct: 138 SKKLYDNQ--VPNWITKVLQGKGHTITPKAAQMLVEFLGNDLGKVNNELEKLLVIIKPGE 195

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK-- 257
            +T Q ++  I  +      E+ NA        A  +  +F  +      +L   L    
Sbjct: 196 QVTPQVIERNIGISKDFNNFELQNALGARDYKKAYRIVTYFSQNPKDHPLVLTVSLLYSF 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F  L K H +   SN +    +                  L+ + +      + K+   I
Sbjct: 256 FSKLLKYHSL---SNKAEAAKVLGVNPYF-----------LKDYQQAAANYPMKKVSAII 301

Query: 318 HLAR 321
            L R
Sbjct: 302 ALIR 305


>gi|302551351|ref|ZP_07303693.1| DNA polymerase III, delta subunit [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468969|gb|EFL32062.1| DNA polymerase III, delta subunit [Streptomyces viridochromogenes
           DSM 40736]
          Length = 336

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 114/340 (33%), Gaps = 14/340 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + + T N      V +  G ++ L+ +   Q     +        +  L   ++Q    T
Sbjct: 8   MARKTANDDPLAPVTLAVGQEE-LLLDRAVQEVVAAAKAADADTDVRDLTPDQLQ--PGT 64

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +        ++++ +   K    L
Sbjct: 65  LA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKAYLGAPAEEITLVLLHAGGAKGKGLL 123

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +     +A          L   +        +S + EA Q L+  +G D     + 
Sbjct: 124 DAARKAGAREVACPKMTKPADRLAF-VRGEFRAVGRSATPEACQALVDAIGSDLRELASA 182

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L      +  I E  V              + +  ++G+   A+    + LA+ +  
Sbjct: 183 VSQLV--ADIEGTIDEAIVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 240

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +        Q +  I  +          + ++      P K + +++ +R W  + V 
Sbjct: 241 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 295

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             L  +       +      +  + + ++ IA+ A     
Sbjct: 296 VALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRGR 335


>gi|78211627|ref|YP_380406.1| DNA polymerase III subunit delta [Synechococcus sp. CC9605]
 gi|78196086|gb|ABB33851.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9605]
          Length = 321

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 108/321 (33%), Gaps = 21/321 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       IN     +        +L  L+  +  + +     E  +    +
Sbjct: 2   PIHLLWGDDAAARDRAINALIGQVVDPSWSSLNLSRLDGADAGQALQAL-EEARTPPFAT 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
            ++++L++          ++ D  E  +     +  +++ +   K +  LR        +
Sbjct: 61  GERLVLLQRSPFCNGCPSELADRFEAALELIPDSSHLVLVNPA-KPDGRLRTTKALQKRI 119

Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            +         +    D       L+  +       +  +A   L+  +G D     +EL
Sbjct: 120 KSGIDQEQSFPLPAAWDGNGQ-RQLVRRTAEALALKVEPDAIDALVEAIGTDSARLESEL 178

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KLS    +D  I+   V++++       +  + +A ++G    AI   D  + +  P+ 
Sbjct: 179 RKLSL---QDTSISAARVQELVGGRSTNAL-AVGDALLEGNPGEAIARWDALIEAGEPAL 234

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     + +    + ++++        I +       P +  ++++ L+         
Sbjct: 235 RIVATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKKLQGRPTKRFLS 293

Query: 309 TLHKIDHRIHLARKKKYLEKN 329
            L ++       ++       
Sbjct: 294 LLGRLLEVEARLKRGAQPGDA 314


>gi|311741304|ref|ZP_07715128.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303474|gb|EFQ79553.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 325

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 113/338 (33%), Gaps = 34/338 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPF----SLVVLNALEIQKNISTFWNEINST 77
            V +  G D+ L  E      +  +     P      L  L A E+ +       E  S 
Sbjct: 6   PVHLILGDDEFL-TERARLQIQRAAAEESGPTGARPELTKLKASEVSEGE---ILEATSP 61

Query: 78  SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN-------N 125
           SLF   ++I+I +     K+V+D +            ++I     +  +KK         
Sbjct: 62  SLFGDNRVIVISDCERAGKEVVDIILRACANPAPGMTMVIIYSVTAKTLKKKKKQPELVA 121

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            LRKIAE        S YP+    L               + +    +L  +G D     
Sbjct: 122 KLRKIAEVHE---VFSLYPNE---LGQWATREFSSHGVRPTPDVIHAVLEGVGSDLRELA 175

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           + + +L S    +  +T + V++       +   +I +A + G++  A+      L    
Sbjct: 176 SAISQLVSDTGGN--VTREAVQNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGA 233

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
              A+      K   + +++  +        +        ++ M + +     R W+ + 
Sbjct: 234 SPVAIAAALANKVGAVARLYSARGDQYSLASQT--GLAPYVVKMTQPVA----RRWSADN 287

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           V + +  +       + +    +  I   +  +A+ A 
Sbjct: 288 VTKAVILVSELDAAVKGQGGEPEFAIEAAVKRVAELAR 325


>gi|282854159|ref|ZP_06263496.1| DNA polymerase III, delta subunit [Propionibacterium acnes J139]
 gi|282583612|gb|EFB88992.1| DNA polymerase III, delta subunit [Propionibacterium acnes J139]
 gi|314923140|gb|EFS86971.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL001PA1]
 gi|314966908|gb|EFT11007.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981250|gb|EFT25344.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091819|gb|EFT63795.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093174|gb|EFT65150.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL060PA1]
 gi|315105527|gb|EFT77503.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL030PA1]
 gi|327327730|gb|EGE69506.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL103PA1]
          Length = 340

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 121/328 (36%), Gaps = 21/328 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L+ +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 27  ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136
             I+++  +S  +K + D +            +I++    +K    L K+     E    
Sbjct: 83  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 142

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +           + D I      G   + ++A   L   LG D       + +L+S   
Sbjct: 143 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 195

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  + V         +    + +A+++G++ +A+    + L+  +   A+     +
Sbjct: 196 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ + 
Sbjct: 256 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 311

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344
              A K   ++ +   +++L   + A +
Sbjct: 312 CDAAVKGAAVDPDYALESMLIAIEEARQ 339


>gi|119470850|ref|ZP_01613461.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Alteromonadales bacterium TW-7]
 gi|119446077|gb|EAW27356.1| Putative DNA polymerase III, delta subunit, probably ATP hydrolase
           [Alteromonadales bacterium TW-7]
          Length = 345

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 98/245 (40%), Gaps = 11/245 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++ +G +     + +   +        D      ++   + Q+ I+ +     S SLF
Sbjct: 18  PFYLVFGEEPFQEAQCVQLIRDTAKAQGFDEVIKFTLMQGFDWQEIIAQY----QSMSLF 73

Query: 81  SKKKIILIENLSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           S + II   +L+ +K  +   +  + ++     + I+IIK  +  +        +     
Sbjct: 74  SARTIIEF-DLNQQKPGVIGSNTFKRVVELVNPDTILIIKGAKASQEVQRGAWFKALDKQ 132

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + + CYP    H+   ++E       ++  +AK  L+    G+ +A   EL+KLS    
Sbjct: 133 GVFVPCYPLTGSHVKRWLDEQCQRLALNMQNDAKLSLINATEGNLLACFQELEKLSL-LH 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            + LIT+Q V   + +     I ++ +A + G    AI + +   +      ++L    +
Sbjct: 192 GNALITQQLVMQGLLNQAKFDIFDLSDALLNGHAKQAIKVLNKLASDNTEVVSILWAITK 251

Query: 257 KFQLL 261
           +   L
Sbjct: 252 ELNTL 256


>gi|322514588|ref|ZP_08067621.1| DNA-directed DNA polymerase III delta subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322119527|gb|EFX91614.1| DNA-directed DNA polymerase III delta subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 341

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 11/263 (4%)

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
            +    S  LF  ++II++    +     +  + E+   +  + ++I+   +  K    +
Sbjct: 64  LFEAAQSNGLFFNRQIIILNLPEAPTASQMKNVAELCRFSHADLLLILCLPKFSKAMEKQ 123

Query: 129 KIAEKFTSVLAIS--CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                      I   C       L   +       +  I  EA Q+L  +  G+ +A + 
Sbjct: 124 AWF-TQIEAQTIQVNCQTPEIAKLPTWLSHRAKAMELQIEPEAVQLLCYSYEGNLLALKQ 182

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            LQ L      D  I+    K+++         + I+A ++GKI  A  +       ++ 
Sbjct: 183 VLQMLQLR-FNDGKISLARAKEVVEQAAQFSPFQWIDALLEGKITRAERILKHLQNEEVQ 241

Query: 247 SHALLHGFLQK-FQLLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQESLRI 300
              LL    ++   LLE     +   N +    +           +   +R   Q +L+ 
Sbjct: 242 PVVLLRIIQKELLVLLEITRSPQPVQNSNQPLYMGNLRAEFDRLKVWQNRRPFYQTALQR 301

Query: 301 WNKNLVRETLHKIDHRIHLARKK 323
                + + + ++       +++
Sbjct: 302 LTYKKLYQLIQRLAELEKQVKQE 324


>gi|325279373|ref|YP_004251915.1| DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM
           20712]
 gi|324311182|gb|ADY31735.1| DNA polymerase III, delta subunit [Odoribacter splanchnicus DSM
           20712]
          Length = 336

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 14/276 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I  L    +  +       F+  VL   ++    ST  +      + S
Sbjct: 17  PIYFLCGEEPFFIDRLTALLENTVLTEDEKAFNQTVLYGNDVSM--STITDTARRFPMMS 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           +++++++      +   D L   I  +  N  I++ + + KK +  + + +K  +     
Sbjct: 75  ERQVVIVREAQNIRDF-DNLLPYI-DHYQNSTILVLAYKNKKPDKRKGVFKKLGN--TPH 130

Query: 142 C-YPDNKIHLMDLIEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           C Y ++     + I E +          I+ +A  IL  +LG D     NE+ KL     
Sbjct: 131 CIYFESAKLYDNKIPEWIIGYCKEKSYGITTKAAGILAESLGTDLSRVANEIDKLVLLLP 190

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGF 254
           +   I E  V++    +      E+++A I+     A  + ++F A+    P    +   
Sbjct: 191 QGGEIQESLVEEHTGISKDFNSFELLSAIIRKDFLKANQIVNYFEANPKNNPLVLTITTL 250

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
            + F  L   H  K+    + +++ +    +   MK
Sbjct: 251 FRYFLNLLTYHYQKKT-TPNTQEMARLLGVHPFFMK 285


>gi|312129764|ref|YP_003997104.1| DNA polymerase iii, delta subunit [Leadbetterella byssophila DSM
           17132]
 gi|311906310|gb|ADQ16751.1| DNA polymerase III, delta subunit [Leadbetterella byssophila DSM
           17132]
          Length = 337

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 117/317 (36%), Gaps = 19/317 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G++   I  +  +  +     +   F+  VL   ++        N      + +
Sbjct: 17  PLYFLHGTEPYYIDLMAEKLLEVTVPDFEKGFNEYVLYGKDVST--GDVLNVARKFPMMA 74

Query: 82  KKKIILIENLS-----TEKKVLDCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKFT 135
           +++++L++         +K+    LE      + + ++++       +  T  K      
Sbjct: 75  ERQLVLVKEAHAITDLGQKEGQARLEAYAKNPLTSTVLVLCFGKPQDERKTWVKAFAGKG 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            +       D++  + + I E        IS +A Q+L  +LG +  A   E++KL    
Sbjct: 135 ELHHFKKMYDSE--VPEFISELCKEENLKISPKAIQLLSEHLGNNPQAISKEIEKLKINL 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA-SKMPSHAL-LHG 253
            E   I    ++  +  +    + E+  A I  ++  A  +A +F + SK     + +  
Sbjct: 193 QEGETIDADIIEKYVGVSKEFNVFELQKALIDKQVTKAFKIAHYFGSNSKDHPVTVNIIS 252

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
               F  +  +H +    +    +I+               + + + ++ + +R+ +  +
Sbjct: 253 LYNFFSKVLLLHGLGGRPDAELSRILG--VNPYFLKD---YKRAAQNYSLSQLRKVIQAL 307

Query: 314 DHRIHLARKKKYLEKNI 330
             R+  AR K     NI
Sbjct: 308 --RLADARSKGVDAGNI 322


>gi|302545459|ref|ZP_07297801.1| DNA polymerase III, delta subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463077|gb|EFL26170.1| DNA polymerase III, delta subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 335

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 104/300 (34%), Gaps = 12/300 (4%)

Query: 50  HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKN 108
                +  L    +Q    T   E+ S SLF+++K++++ +        +  ++  +   
Sbjct: 46  DPDTDVRDLTPDALQ--PGTLA-ELTSPSLFAERKVVVVRSAQDLSADTIKDVKGYLGAP 102

Query: 109 ICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
                ++++ +   K    L    +     +A          L   +        +S + 
Sbjct: 103 AEEITLVLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRTSGRSATP 161

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
           EA Q L+ ++G D     + + +L+     +  I E  V              + +  ++
Sbjct: 162 EACQALVDSIGSDLRELASAVSQLA--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVE 219

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           G+   A+    + +++ +    +     Q  + + K+             + ++      
Sbjct: 220 GRAAEALEALRWAMSTGVAPVLITSALAQGVRAIGKL--ASAPRGARPGDLARELGMP-- 275

Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           P K + +++ +R W+ + V   L  +       +      +  + + ++ IA+ A    +
Sbjct: 276 PWKIDRVRQQMRGWSADGVSIALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARAGRS 335


>gi|288927504|ref|ZP_06421351.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330338|gb|EFC68922.1| DNA polymerase III, delta subunit [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 342

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 101/257 (39%), Gaps = 10/257 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G +   I ++ +  ++ +       F+  +L  ++         +   +  + ++
Sbjct: 25  VYVLMGEESYYIDKIASLLEETVLQPQERDFNQDILFGVDTNG--VQVADLCKAYPMMAE 82

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140
           +++++++     K ++D L + +   +   I+++  K+  I +   L  +A   +  +  
Sbjct: 83  RRLVMVKEAQNLK-LVDALAKYLENPVQTTILVLCHKNGTIDRRKKL--LARAESMGVVF 139

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLEDI 199
                    L   I+  L   + ++  +A  ++  ++G D     +EL K L S    D+
Sbjct: 140 ESKKKRDYELPAFIKGYLATKKATVEDKAAIMIAEHIGADLNRLTSELDKVLISLPENDL 199

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT   V+  I  +      E+ NA +   ++ A  +  +F  +       A L      
Sbjct: 200 RITPDIVERQIGVSKEFNGFELRNAIVSRDVFKANQIIQYFDKNPKAGSIFAFLPLLFSF 259

Query: 258 FQLLEKIHIIKECSNIS 274
           FQ L   +     +N +
Sbjct: 260 FQNLLIAYYAPNKNNET 276


>gi|61657477|emb|CAI44389.1| hypothetical protein [Thermotoga sp. KOL6]
          Length = 325

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 80/212 (37%), Gaps = 17/212 (8%)

Query: 65  KNISTFW---NEINSTSLFSKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNE 120
            +        + IN+ ++FS K +I I +  + K        E++     +  I ++S  
Sbjct: 36  DDPDKLNFIKSVINTKTIFSGKTVIDIVDFDSWKAQDQKRFLELVKNVPPDVYIFVRS-- 93

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
                  +K  EK  ++     +  +    ++ IE         I+K+A Q+  + +G +
Sbjct: 94  -------QKTKEKGVTLDLPKPWETD--KWLEWIERRFRENGLKITKDALQLFFSKVGTN 144

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            +    E++KL +Y  +   +T + V++++        +E   A  +GK   A  L    
Sbjct: 145 DLLVEREIEKLKAYS-DTGEVTAEDVEEVVFTYQTPGYDEFCFAVSEGKRKLAHALLSQL 203

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
                    +    +  F  L K+ ++     
Sbjct: 204 WK-TTEPVVIAAALVNHFLDLFKLVVLVTRKR 234


>gi|307244336|ref|ZP_07526450.1| DNA polymerase III, delta subunit [Peptostreptococcus stomatis DSM
           17678]
 gi|306492302|gb|EFM64341.1| DNA polymerase III, delta subunit [Peptostreptococcus stomatis DSM
           17678]
          Length = 345

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 133/331 (40%), Gaps = 28/331 (8%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + + + YG +  LI  L++ F+     +  D F+L +++  E   N+ +  + I +  + 
Sbjct: 16  NKINLVYGRELLLIDNLVDAFRDLAKDSMPD-FNLTIIDGQET--NLESMVSAIETLPMM 72

Query: 81  SKKKIILIENL----STEKKVLDCLEE---IIIKNICNHIIIIKS--NEI-KKNNTLRKI 130
           S K+ +L+++     +  +   D  E     II+++ +  +++ +   +I  K + L K 
Sbjct: 73  SDKRYVLVKDFELFQTKRRFFNDEAESELIRIIEDMPDTALVLFASYGDIDTKKSRLYKA 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIAS----- 184
             K   VL +     + + L    +E+    Q   +       +  +G  D+ +S     
Sbjct: 133 VSKLGDVLVMD--KLDDMDLFKWCKEAFEKNQIRANNSELVYFIDLVGYKDKKSSVTLAD 190

Query: 185 -RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
            +NE+ K+S+Y  +   + ++ +  ++ +     + ++I+         A+ L D  +  
Sbjct: 191 LKNEIDKISAYLGKGNSLDKESIDRLLTNNIEDNVFKMIDMIGSKNTKMALNLFDDMIYR 250

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                        +F  + +I  +++ S +SF+ I          + +  L    + +++
Sbjct: 251 GGSILGTFSLLSARFSQILQIKALQD-SRVSFDTIKNTMGLQKFVLNK--LTSQAKNFDE 307

Query: 304 NLVRETLHKIDH---RIHLARKKKYLEKNII 331
             +R  +  I      I   +    L   I+
Sbjct: 308 ESIRAIIKSISDFDYAIKQGKMSDRLAAEIL 338


>gi|296160451|ref|ZP_06843267.1| DNA polymerase III, delta subunit [Burkholderia sp. Ch1-1]
 gi|295889200|gb|EFG69002.1| DNA polymerase III, delta subunit [Burkholderia sp. Ch1-1]
          Length = 372

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 109/296 (36%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG +  L  E  ++ +           S+  +       + S+      S SLF  
Sbjct: 19  LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVERGF---DWSSLLGASQSMSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           ++++   I +    K+  D L+ +      + + +I    +             +   +A
Sbjct: 76  RQLVELRIPSGKPGKEGADALKALAAAVNEDVLTMITLPRLDAATQKSAWFTSLSDAGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V+D + +     + ++  A + G +     + D        +  +L   
Sbjct: 195 LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVLWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++  + + L
Sbjct: 255 VEEVRTLLRIKRGV-AAGKPLAMLVRENR--VWGPRERLIGPALSRVSEGTLEKAL 307


>gi|291544165|emb|CBL17274.1| DNA polymerase III, delta subunit [Ruminococcus sp. 18P13]
          Length = 342

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 103/326 (31%), Gaps = 26/326 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG D   +     +  K +         +   +  ++  ++    + +   S+F++
Sbjct: 21  LYYLYGKDVAGVAAFTKRLIKKLDGD------VQKYDGRDL--DLEQLADAVGQYSMFAQ 72

Query: 83  KKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIK--------SNEIKKNNTLRKIAE 132
             +ILI +   E    D ++  +   +++    ++I           +       +K+ +
Sbjct: 73  TNVILINDPPAEDWSADRIQSFLKCLEDVPPSTVVICNVTGFDVCGGKKAPTPKHKKLID 132

Query: 133 K-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                 +  +        L+  + E       S+S++  + +      D +   NEL KL
Sbjct: 133 FFGKHGVVCNFEAKTAAQLVKPMMERASRSGCSLSRQNAEQIAQLCLCDTMRIGNELDKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +Y      IT + +  ++     L    +  A        A+   D     +     LL
Sbjct: 193 CAYAEG-GEITGEAISMLVAREDSLNAFALARAVTARNGRAAMEALDILSQQRNEPVMLL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE--- 308
                 F  L +    +         +     K      +N  +++ +  +   +R    
Sbjct: 252 SAITSAFLDLYRAKAAQAAGKHHEHVLEDFLYKGREFAVKNAFRDAGKS-SLEQMRACIL 310

Query: 309 TLHKIDHRIHLARKKK--YLEKNIIF 332
            L   D  +   R      +E+ I  
Sbjct: 311 ILRDTDAALKSTRLDGRILIEEAITR 336


>gi|124021798|ref|YP_001016105.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9303]
 gi|123962084|gb|ABM76840.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 336

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 114/333 (34%), Gaps = 32/333 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +F+G D       I     ++     +  +L  L+  +     S    E  +    S
Sbjct: 2   PIHLFWGDDAAARDHAIETLIGDVVDQAWNSINLSRLDGAD-AGQASQALTEARTPPFGS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII-----------KSNEIKKNNT 126
             +++L++      +   ++ +  E+++        +++            +  ++K   
Sbjct: 61  GGRLVLLQRSPFCNACPSELANRFEDVLDLIPETSHLVLCNPNKPDGRLRTTKALQKLVK 120

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L++ +EK   + AI     +     +L+E +       +  EA   L+  +G D      
Sbjct: 121 LKQASEKSFLLPAIW----DGAGQQELVERTARDLGLQLEPEATTALVEAIGNDSTRLNA 176

Query: 187 ELQKLSSYCLEDIL----------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           ELQKL+ +                I  ++V  +I       ++ + ++ + G    AI  
Sbjct: 177 ELQKLALHAEIRQENATANQSPTLIKAENVAALIEGMATNALQ-VGDSLLAGHAGEAIAR 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            D  L +  P+  ++     + +    + ++++        I +       P +  ++++
Sbjct: 236 LDALLDAGEPALRIVATLTGQIRGWLWVSLLEQQGERDVNVIAKAAGIG-NPKRIYVMRK 294

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329
            L+          L ++       ++       
Sbjct: 295 QLQGRPPQRFLTLLSRLLEVEAALKRGAIPTDA 327


>gi|262374951|ref|ZP_06068185.1| DNA polymerase III, delta subunit [Acinetobacter lwoffii SH145]
 gi|262309964|gb|EEY91093.1| DNA polymerase III, delta subunit [Acinetobacter lwoffii SH145]
          Length = 328

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   ++ +G +  L   LI+ F+ +              +   +  +  T +N +
Sbjct: 10  KRVDEARGAWVLHGQEPLLEQNLIDAFRASWQKQ---DIERQRYDISSV-ADWKTVFNAL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS +  I +  N+  +   +  L+  +  N  N ++++     SN +K  ++  +
Sbjct: 66  NSLSLFSTQLAIEVHGNIKPDASAIKLLKNYLQHNEQNLLLVVMPKQDSNSLK--SSFFQ 123

Query: 130 IAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + +    +V  ++ YP ++  ++ +  E L      ++ +A Q L  +   + +A++N L
Sbjct: 124 LIDANGVNVSLVANYPKDRQQILGIEAEKL---GIRLANDAWQWLEQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++S    E  +I   H+   + D       ++ +A +QG +  +I +  + + S  P  
Sbjct: 181 MRVSDTFAEVDIIQVDHLYACLQDQSRYSTYDLSDALLQGNLSQSIKIFQYLVVSGEPMS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L    ++ +LL ++          FE+     +  I   K  + Q++LR  +      
Sbjct: 241 LILWSLSKEMRLLMQL----------FEQPQNALQIGIWKTKVGLYQQALRRLSPQTFLA 290

Query: 309 ---TLHKIDHRIH 318
               L +ID  I 
Sbjct: 291 WPGLLLRIDASIK 303


>gi|329959984|ref|ZP_08298480.1| DNA polymerase III, delta subunit [Bacteroides fluxus YIT 12057]
 gi|328533118|gb|EGF59887.1| DNA polymerase III, delta subunit [Bacteroides fluxus YIT 12057]
          Length = 339

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L ++   ++  +I+T  N      + 
Sbjct: 21  RPVYYLMGEEAYYIDLIADYIADNVLTDTEKEFNLSIVYGADV--DIATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++   + + + D L   + + + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQSIRNM-DELSYYLQRPLNSTILVICHKHGVLDRRKKL--AAEIEKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPAFITSYMKRKGVDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              IT + ++  I  +      E+  A ++  +  A  +  +F  +    P    L    
Sbjct: 196 QTRITPEQIERNIGISKDYNNFELRGAIVEKDVLKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E S       +           R  L  ++R ++     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKSEQGIANFLGLKSP---WQSREYL-SAMRRYSGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L   +I+ + +  I
Sbjct: 312 ADAKSKGVGNSSLNDGDILRELVFKI 337


>gi|315187287|gb|EFU21043.1| DNA polymerase III, delta subunit [Spirochaeta thermophila DSM
           6578]
          Length = 326

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 131/328 (39%), Gaps = 14/328 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F   G + GL  E +   K++++ T+    ++   +    +   S     + + SLF +
Sbjct: 7   IFFLLGPETGLKEEYLQTLKQDLTKTHG---AIEEEHLYAFEDTFSDVLPRLQNASLFGE 63

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNI-CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             ++LI N          L  +  +N   +  ++I S+EI+    L K+A   T  +   
Sbjct: 64  HTLLLIHNAERLSTQDQNLLGLYAQNPSPSSTLVILSDEIRLPQRLEKLASHHTREVFWE 123

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
              D K     +I ++L    +SI  +A ++ L  +     A   E  +L+ +  E   I
Sbjct: 124 LREDQK---ARMIHQTLRRSGRSIEPDAVELFLQMVSPVSSALIEEASRLAFFFPEGHTI 180

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           TE++++  +  +    +  +     +  +  A+      L+     H ++ G L +F+ L
Sbjct: 181 TEKNIERFLFHSREENVFTLFAHLARRDLEAALECTSALLSQAEAVHQIIGGLLWQFKRL 240

Query: 262 EK-IHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
              + ++KE      E+ +++   + +   +   ++ +LR +     +  + ++      
Sbjct: 241 LMVMRLLKERYGR--EEALREAGIRGMGFKRT--METALRNYTLEETQRAIVELVSCDEQ 296

Query: 320 ARK-KKYLEKNIIFQTILYIAQTACKNN 346
            R  ++ L   I   T+  I +      
Sbjct: 297 VRLHRRELHPLIFTLTLHRIVRHPRAAR 324


>gi|294629294|ref|ZP_06707854.1| DNA polymerase III, delta subunit [Streptomyces sp. e14]
 gi|292832627|gb|EFF90976.1| DNA polymerase III, delta subunit [Streptomyces sp. e14]
          Length = 339

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 113/340 (33%), Gaps = 14/340 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + + T N      V +  G +  L+ +   Q     +        +  L   ++Q    T
Sbjct: 11  MARKTANDDPLAPVTLAVGQED-LLLDRAVQEVVAAARAADADTDVRDLTPDQLQ--PGT 67

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +        ++++ +   K    L
Sbjct: 68  LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKGYLGAPAEEITLVLLHAGGAKGKGLL 126

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +     +A          L   +        +S + EA Q L+  +G D     + 
Sbjct: 127 DAARKAGAREVACPKMTKPADRLAF-VRGEFRALGRSATPEACQALVDAIGSDLRELASA 185

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L      +  I E  V              + +  ++G+   A+    + LA+ +  
Sbjct: 186 VSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 243

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +        Q +  I  +          + ++      P K + +++ +R W  + V 
Sbjct: 244 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 298

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             L  +       +      +  + + ++ IA+ A     
Sbjct: 299 VALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRGR 338


>gi|256847008|ref|ZP_05552454.1| DNA polymerase III, delta subunit [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715672|gb|EEU30647.1| DNA polymerase III, delta subunit [Lactobacillus coleohominis
           101-4-CHN]
          Length = 342

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 119/338 (35%), Gaps = 21/338 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            +  V++  G+   ++ E    F  N+        ++   +  E  +++ST  ++  S  
Sbjct: 14  AAAPVYLVLGTQSVMMAETRKAFL-NLVPKEERVMNVGSYDLEE--ESLSTALDDAMSAP 70

Query: 79  LFSKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            F K++++ +               K+  + L+  +     + I++I +   K +     
Sbjct: 71  FFGKRRLVFLNKPAFLTTGGEKGKMKQNPELLKNYLTHPQLSTILVIMAPYEKLDGRKGI 130

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + E     + +     N+      I+  +        + A   L+     D       L+
Sbjct: 131 VKELKKEAVTVEVQLLNEQSARKNIQSQVSAAGFQFMQGALDELVKRTNADYSLMVANLK 190

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL     +D  IT   VK ++  +    + +++   +  +   ++ L    L S+     
Sbjct: 191 KLMILNYQDQEITVASVKKLVPQSLDSNVFDLVTTVLNHQQTQSLDLYRQLLDSEQQPLQ 250

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +    + +F+LL ++ I+         +       N+ P +  +  + +R ++   +   
Sbjct: 251 INAVLVSQFRLLLQLKILSARG---LSQGTLAKRLNVHPYRVKLGLQMVRKFSLTDLMNA 307

Query: 310 ---LHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
              L + +  +    +   L   +    +L  +Q   K
Sbjct: 308 YLGLIRCERALKTTSRSPEL---LFQLFMLQYSQQVRK 342


>gi|259909124|ref|YP_002649480.1| DNA polymerase III subunit delta [Erwinia pyrifoliae Ep1/96]
 gi|224964746|emb|CAX56263.1| DNA polymerase III, delta subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479152|emb|CAY75068.1| holA [Erwinia pyrifoliae DSM 12163]
          Length = 343

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 105/292 (35%), Gaps = 15/292 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  GS+  L+ E  +  +          F+  V  ALE   +    ++   + SLF+ +
Sbjct: 21  YLLSGSEPLLLQEAQDAIRAAAQQQG---FTEHVSVALETGTDWQEIFSTCQALSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138
           + +L+          + + L  +      + ++I+++  + K   N+   K      + +
Sbjct: 78  QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRAARLTKAQENSAWYKAL--SANAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            + C       L   +         ++   A Q+L     G+ +A    L++LS     D
Sbjct: 136 VVPCQTSEHGQLPRWVTIRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+  + D         ++A + GK   A+ +     A  +    LL    +  
Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDIEPVILLRTLQRDL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            LL  +      ++     +  +    +   +R +  E+L+      + + +
Sbjct: 255 LLLLTLQRQM--AHTPARTLFDQHR--VWQNRRALFSEALQRLTAAQLAQAI 302


>gi|61657530|emb|CAI44441.1| hypothetical protein [Thermotoga sp. RQ2]
          Length = 329

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G       +  K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 12  TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 68

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
               K      L E++     +  I I           R        V      P     
Sbjct: 69  FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 117

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            ++ IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V+++
Sbjct: 118 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 176

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +        ++   A  +GK   A  L             +       F  L KI ++  
Sbjct: 177 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 235

Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
                      ++ ++    +       +   L    + W   ++   L+
Sbjct: 236 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 280


>gi|315103322|gb|EFT75298.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL050PA2]
          Length = 340

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 120/328 (36%), Gaps = 21/328 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L  +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 27  ALLVQGAEA-LFSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136
             I+++  +S  +K + D +            +I++    +K    L K+     E    
Sbjct: 83  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 142

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +           + D I      G   + ++A   L   LG D       + +L+S   
Sbjct: 143 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 195

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  + V         +    + +A+++G++ +A+    + L+  +   A+     +
Sbjct: 196 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ + 
Sbjct: 256 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 311

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344
              A K   ++ +   +++L   + A +
Sbjct: 312 CDAAVKGAAVDPDYALESMLIAIEEARQ 339


>gi|237713200|ref|ZP_04543681.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406661|ref|ZP_06083210.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_22]
 gi|294643455|ref|ZP_06721269.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CC 2a]
 gi|298484012|ref|ZP_07002181.1| DNA polymerase III, delta subunit [Bacteroides sp. D22]
 gi|229446667|gb|EEO52458.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355364|gb|EEZ04455.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_22]
 gi|292641203|gb|EFF59407.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CC 2a]
 gi|298269793|gb|EFI11385.1| DNA polymerase III, delta subunit [Bacteroides sp. D22]
          Length = 339

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPVYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATSMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLTYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  +   +   +I+ + +  I
Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337


>gi|317405769|gb|EFV86060.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 352

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 107/309 (34%), Gaps = 16/309 (5%)

Query: 1   MAT-IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLN 59
           MA  +++ +      +       ++   G +  L+ E ++  +       +     +V++
Sbjct: 1   MAQPLDADRLADHLQRAGNRLAPLYTVSGDEPLLVTEAVDALRAAGRGAGYTERLSMVMD 60

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIK-----NICNH 112
           A   + + S       S SLF  ++I+   I      K   D L  +  +     +  + 
Sbjct: 61  A---RSDWSAVIAATQSVSLFGDRRILELKIPTGKPGKSGADTLARLAEQAEKQADNPDT 117

Query: 113 IIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
           +I++    + K     +  +      + +      +  L   + + L    +       Q
Sbjct: 118 LILVALPRLDKATRESRWMQALARGGMTVDIANVERGRLPAWVGQRLARQNQRTDNATLQ 177

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            +   + G+ +A+  E+QKL      +  +  + V+  + +     +  + +A + G I 
Sbjct: 178 WMADKVEGNLLAAHQEIQKLGL-LYPEGQLAPEDVERAVLNVARYDVFGLRDAMLAGDIA 236

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
             I + D   A       +L    ++ +LL ++             ++++    I     
Sbjct: 237 RTIRMIDGLRAEGEALPLVLWAVGEEIRLLARV-AEARSLGQDANGLMRRLR--IFGAHE 293

Query: 292 NILQESLRI 300
            +  ++L  
Sbjct: 294 RLALQALGR 302


>gi|227874459|ref|ZP_03992635.1| possible DNA-directed DNA polymerase III delta subunit
           [Oribacterium sinus F0268]
 gi|227839687|gb|EEJ50141.1| possible DNA-directed DNA polymerase III delta subunit
           [Oribacterium sinus F0268]
          Length = 364

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 112/317 (35%), Gaps = 12/317 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L+      F +  S         +    +E         + + +   F+
Sbjct: 51  PLYLLYGEEDYLLSYYKKAFFQAFSEN-----EGINCMVVEELPPTDELISAVETLPFFA 105

Query: 82  KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             ++++ +  S   KK+ +   + +  +    +++    ++ K ++L K+       L +
Sbjct: 106 PYRLMVFQGKSSGRKKLSEEFIQYLKNSPKETVLLFIEEKVDKRSSLYKVV--KERGLCL 163

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +C   ++  L     + L    K I +    +LL+  G       N  +    Y  ++  
Sbjct: 164 ACMEQDQAFLQRFALQQLKKEGKKIRENVLGLLLSRSGSSLYRIVNACKNCVDYIGDEEE 223

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT++ V+ ++       + ++I A  +G            L  +     + +   +  + 
Sbjct: 224 ITQEAVEAVVEKLPEDRVFDLIEALGRGDQEKVFQYYGDLLRLEEKPAKIQNLIRKNVEK 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +           E+ ++          R  + ++ R + ++ ++   H +       
Sbjct: 284 LLVVREYLTEG--LREREMESRLSMDSWRVRKYIAQA-RTYTQSGLQSLFHSLLRLEEEN 340

Query: 321 RKKKYLEKNIIFQTILY 337
           RK   +  ++  + +L 
Sbjct: 341 RK-GRISDSLALELLLA 356


>gi|288924783|ref|ZP_06418720.1| DNA polymerase III, delta subunit [Prevotella buccae D17]
 gi|288338570|gb|EFC76919.1| DNA polymerase III, delta subunit [Prevotella buccae D17]
          Length = 342

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 127/329 (38%), Gaps = 17/329 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S        ++L       V++  G +   I  + +   +N+       F+ +VL
Sbjct: 1   MAEKKSGPSFDAIMRDLQARKFAPVYVLMGDESYYIDRITDYITENVLSPEERDFNQMVL 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116
              +     +   +      + S+ +I++++     + + + +E+ + K + + I+++  
Sbjct: 61  FGADTTA--AQIADMARRYPMMSEYQIVVVKEAQNLRNL-EPIEKYLEKPVKSTILVLCH 117

Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           K+  + +    +KI  K  +V +           L   IE  L     +I  +A Q++  
Sbjct: 118 KNGVLDRR---KKIFAKAQAVGVVFESRKLYDRELPPFIENYLKRKNVAIDPKATQMIAD 174

Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
           ++G D     +EL+K L S    +  +T + V+  I  +      E+ +A +   ++ A 
Sbjct: 175 HIGADLNRLTSELEKVLISLPESNRRVTPEVVEREIGVSKDFNAFELRDAIVNRNVFKAN 234

Query: 235 MLADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
            +  +F ++      ++ L      FQ L   +   +  +            +     R+
Sbjct: 235 QIIKYFDSNPKAGSIYSFLPLLFSYFQNLMIAYYAPKKQDADAVAKFLDLRNS--WAARD 292

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            L   +R ++ N   + + K+      ++
Sbjct: 293 YLT-GMRNYSGNKTLQIIDKLREIDAKSK 320


>gi|297617829|ref|YP_003702988.1| DNA polymerase III subunit delta [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145666|gb|ADI02423.1| DNA polymerase III, delta subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 328

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 94/263 (35%), Gaps = 17/263 (6%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G +  LI   + Q  + I     +    V  +  E+ ++    ++ ++   LF   +
Sbjct: 8   VLCGDEPYLIENRLKQIIEEIRNQIGEEPECVFKDGDELGEDE--LFDLLHFAPLFGYVR 65

Query: 85  IILI-----------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           ++++           +       V   L + +       ++I+ +  +   +   K+ +K
Sbjct: 66  VLVLHWLPCLVSGGPKRSRKPSNVEQILLQYVGAPNPLQVLILITPSLPTESEFAKLLKK 125

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
              V  I     NK  L   ++            +  + +  + G D  A  N+++KL  
Sbjct: 126 QKMVEEIK--RLNKRELQSWVKSEFAQRGVEPEDKLVEEIAGS-GWDMSALENQVEKLCL 182

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
              E   ++    ++++     + I  + +A +   +  A        A   P   +L+ 
Sbjct: 183 -ASEKRRLSSAEAQELLDLREDVKIFALSDALLNRDLAAAYGTVSRLFAQGEPPGLILYT 241

Query: 254 FLQKFQLLEKIHIIKECSNISFE 276
             ++F L+ +   +K+    + E
Sbjct: 242 LTKQFLLMAEAKALKQQGTTASE 264


>gi|75812744|ref|YP_320361.1| DNA polymerase III subunit delta [Anabaena variabilis ATCC 29413]
 gi|75705500|gb|ABA25172.1| DNA polymerase III, delta subunit [Anabaena variabilis ATCC 29413]
          Length = 319

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 109/261 (41%), Gaps = 20/261 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+++YG D   + + I+             F+ + L+  E +   +  + E+ +     
Sbjct: 2   PVYLYYGEDTYSLNQKIDHLVNQNVHAEWKDFNYIKLSGNE-KNIAAKVFTEVMTLPFGE 60

Query: 82  KKKII------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN------TLRK 129
             KI+      LI +LS E      LE  + +   ++I++I SN+ K ++      T+ K
Sbjct: 61  GNKIVHTDSDHLIGSLSNEDN-NQELENQLSRIPASNILLITSNK-KPDSRRTVVKTILK 118

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            A++    L + C+  +K  +++LI +   I Q   + +    L+  +G +     +E  
Sbjct: 119 YAQQEEFPL-VPCW--DKKGIVNLIGKYAAIHQVKFTPDVTDYLVEAIGNNTARVDSEFA 175

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+ Y   + +I+ + +K ++ + +  Y +++  A ++     AI   D  L S      
Sbjct: 176 KLAVYA-SEKIISLEEIKQLVSNHNTDY-QKLTIAMLRNHSNLAIAQVDKLLDSNEHPLK 233

Query: 250 LLHGFLQKFQLLEKIHIIKEC 270
           ++      F+         E 
Sbjct: 234 IVATLTSFFRTWLITKAGVEA 254


>gi|322833896|ref|YP_004213923.1| DNA polymerase III, subunit delta [Rahnella sp. Y9602]
 gi|321169097|gb|ADW74796.1| DNA polymerase III, delta subunit [Rahnella sp. Y9602]
          Length = 346

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 110/302 (36%), Gaps = 11/302 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G+D  L+ E  +  +              +L+A        + ++   + SLF+ +
Sbjct: 21  YVLCGNDPLLLQESQDSIRHAAQQADFQEHYTYILDAHT---EWESIFSICQALSLFASR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +  ++++        + + L ++      + +++++  ++ K        +      + +
Sbjct: 78  QTLMLILPENGPTAPMAEQLLKLTTLLHDDILLLLRGTKLTKAQENSAWFKALSDKGVFV 137

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC    +  L   +          + + A Q+L     G+ +A    L++LS     D  
Sbjct: 138 SCQTPEQAQLPRWVTRRAKELSLELDEPANQLLCYCYEGNLLALAQSLERLSL-LYPDGK 196

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T   V++ + D         ++A + GK   A  +             LL    ++  +
Sbjct: 197 LTLPRVEEAVNDAAHFTPYHWLDALLAGKSKRAWHILRQLQQEDSEPVILLRTVQRELLM 256

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L  +    +    +  + +   +K +   +R ++ ++L+  +   + + +  +       
Sbjct: 257 LLNLKRKMDT---TPIRTLFDQQK-VWQNRRALVTQALQRLSLAQLSQAVRLLTQMEITL 312

Query: 321 RK 322
           ++
Sbjct: 313 KQ 314


>gi|196047841|ref|ZP_03115019.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108]
 gi|196021097|gb|EDX59826.1| DNA polymerase III, delta subunit [Bacillus cereus 03BB108]
          Length = 326

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 129/328 (39%), Gaps = 25/328 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ +G +  L+ + + +     S       S+ V +  E     +    E+   SL  +
Sbjct: 3   IYVLFGLETYLMEKELARIINKESGDNSSDLSVNVYDCEETPVQTAIQDAEM--LSLMLE 60

Query: 83  KKIILIENLS-------TEKKV---LDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
           +K ++I+N S        +KKV   L+ +E  + +      II  +K  ++     + K 
Sbjct: 61  RKKVIIKNASFLTGQKSNDKKVKHDLETVERYLEEPNEETDIIFMVKYEKLDSRKKIVKS 120

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K   ++ +S   + +      I++  +    +I+KEA + L   +G +      E++K
Sbjct: 121 LKKSADIIEVSHLKEFEAK--KWIKDEAVKLNITITKEAVEQLYLLIGSNLQMLSKEIEK 178

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+ Y  E   +    +  ++  T       II    + +   A  +    +  K+    +
Sbjct: 179 LAMYVGEKGKVDADTIHLLVKKTLEQNTFLIIEKIGKKQFAEAHSIFRELMIQKIEPIMI 238

Query: 251 LHGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
                ++F  +   K HI          K++      I P    I+    + +++  +++
Sbjct: 239 AATISKQFSRMLEAKAHIHNGAEQRDLPKLL-----GIQPYPAKIIVNQAKGFHETTLQQ 293

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            LH++       ++    +K +IF+  L
Sbjct: 294 ILHRLSQMDFEFKRGG--DKELIFEMFL 319


>gi|168187884|ref|ZP_02622519.1| DNA polymerase III, delta subunit [Clostridium botulinum C str.
           Eklund]
 gi|169294271|gb|EDS76404.1| DNA polymerase III, delta subunit [Clostridium botulinum C str.
           Eklund]
          Length = 340

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 114/295 (38%), Gaps = 23/295 (7%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
             F  ++  N      V++F GSD+  I + I++    +        + V L+ + ++  
Sbjct: 3   DSFALENKLNKGNLSNVYVFCGSDEQSIKKAIDKIVNKVVNKDFKELNYVQLDGMTVE-- 60

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
           I +  N   +  L S+K++ LI   +  K   D +++ + K   + I  I+  ++ K++ 
Sbjct: 61  IDSIINACETLPLMSEKRVALIYRANFLK---DKVDKSMEKVFKSLIKYIE--DVPKDSI 115

Query: 127 L--RKIAEKFTSVL------------AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172
           L    I E                   +       + L   + E      K+ISK    +
Sbjct: 116 LIMYYIFENDREKESLKLKKLDKKIEVVKFSKLKGVALQRKVGEIFKRKNKTISKSDLAL 175

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
               +  +     NE++KL  Y  +  ++T + +  +I   +   I  +++   Q K   
Sbjct: 176 FCNIVENNMDIIENEVEKLCCYVDDRDIVT-EDITKLISGKNDNDIFNLVDFVSQKKPQK 234

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           ++ + +  +        +L    ++F+L+  I +  +    + + I ++   +  
Sbjct: 235 SLDILNELVFKGESVTGILRMIQRQFKLIFDIKVNMDKE-KNKDDIARELRLHPF 288


>gi|118602184|ref|YP_903399.1| DNA polymerase III, delta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567123|gb|ABL01928.1| DNA polymerase III, delta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 339

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 123/324 (37%), Gaps = 17/324 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G++  LI + + Q  K       D      ++A     + +  + EI++ SLFS 
Sbjct: 19  IYFIFGAEILLIEQSLAQINKTAKKVGFDERISFDIDANF---DWNQIFREISAVSLFSP 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           K II   ++      K    L EI      + ++I+ + ++       K  +    +  +
Sbjct: 76  KCIIKCRLKTGKIGIKGAKALTEIASTLPDDILLIVSTGKLDMAQQKSKWFKTLEQLGTV 135

Query: 141 -SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
              +     HL+D I   +       + E  Q +     G+  AS  E+QKL      + 
Sbjct: 136 VQHFEMQSNHLVDWIANHMAELGLEANTEIAQSIAFCTEGNLTASMQEIQKLKM-AYPNG 194

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I  Q   +         +  +I+A + G       +    ++  +    L +    + +
Sbjct: 195 KINTQEYLEQANQQSKYTVYGLIDAALFGNSNQVNKIYQTLISDTIMPIQLSNSLYLEIK 254

Query: 260 LLEKIHII-KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKIDH 315
            + ++ +   +  NI+   ++Q     +   ++ I+   L+  +   +++   +L +ID 
Sbjct: 255 SIIEMSVELIQVKNINI--VLQNNR--VWNKRKPIITNILKRHSYQRLQKLLLSLGRIDR 310

Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339
            I        +++  +   +L +A
Sbjct: 311 SIKGMDNLNVIDE--LHTLLLSLA 332


>gi|289425394|ref|ZP_06427171.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK187]
 gi|289154372|gb|EFD03060.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK187]
          Length = 340

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L+ +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 27  ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             I+++  +S  +K + D +            +I++    +K    L K+ +    ++  
Sbjct: 83  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141

Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               D      + D I      G   +  +A   L   LG D       + +L+S    +
Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGDDLRTLAAAVGQLASDS-PN 197

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + V         +    + +A+++G++ +A+    + L+  +   A+     +  
Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPVAVTAAMARGL 257

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ +   
Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313

Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344
            A K   ++ +   +++L     A +
Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339


>gi|310766976|gb|ADP11926.1| DNA polymerase III subunit delta [Erwinia sp. Ejp617]
          Length = 343

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 105/292 (35%), Gaps = 15/292 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  GS+  L+ E  +  +          F+  V  ALE   +    ++   + SLF+ +
Sbjct: 21  YLLSGSEPLLLQEAQDAIRAAAQQQG---FTEHVSVALETGTDWQAIFSTCQALSLFASR 77

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138
           + +L+          + + L  +      + ++I+++  + K   N+   K      + +
Sbjct: 78  QTLLLTLPENGPNAAMSEQLLTLSTLLHSDILLILRAARLTKAQENSAWYKAL--SANAV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            + C       L   +         ++   A Q+L     G+ +A    L++LS     D
Sbjct: 136 VVPCQTPEHGQLPRWVTIRAKKLNLTLDDAANQLLCYCYEGNLLALSQALERLSL-MWPD 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+  + D         ++A + GK   A+ +     A  +    LL    +  
Sbjct: 195 GKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRALHILRQMRAEDIEPVILLRTLQRDL 254

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            LL  +      ++     +  +    +   +R +  E+L+      + + +
Sbjct: 255 LLLLTLQRQM--AHTPARTLFDQHR--VWQNRRALFSEALQRLTAAQLAQAI 302


>gi|219871150|ref|YP_002475525.1| DNA polymerase III subunit delta [Haemophilus parasuis SH0165]
 gi|219691354|gb|ACL32577.1| DNA polymerase III subunit delta [Haemophilus parasuis SH0165]
          Length = 340

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 114/319 (35%), Gaps = 31/319 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP---FSLVVLNALEIQKNISTFWNEINSTS 78
             ++  G D  L+ E  +   +   +   D    F++      ++       ++ + S  
Sbjct: 19  PFYLLTGQDLLLVGEAKDCIVQTARLQDFDEKQEFTIANDTQWDM------LFDLVQSNG 72

Query: 79  LFSKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LF  ++I+++             L E++  +  + + ++   ++ K    +    +  + 
Sbjct: 73  LFFNRQILILNLPENLTVTQQKQLSELLAFSHTDLLFVLHQPKLTKAMEKQSWFVQLNNA 132

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + ++C   +   L   ++      Q  +  +A Q+L  +  G+ +A +  LQ L     E
Sbjct: 133 VVVNCQTPDITKLPIWLQHRAKTMQLQLEPDAIQLLCYSYEGNLLALKQALQMLQLRFAE 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I     K++I  +      + ++A ++GKI  A+ +       ++    LL    ++
Sbjct: 193 QK-IGLNRAKEVIEQSAQFTPFQWVDALLEGKINRALRVLQHLQNEEIQPVVLLRIVQKE 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEK-------------NIIPMKRNILQESLRIWNKN 304
             LL ++           + II   +               +   +R   Q +++     
Sbjct: 252 LLLLLEM-------TRPPQPIINSHQPLYSGNLRTEFDRLKVWQNRRGFYQAAVQRLTYR 304

Query: 305 LVRETLHKIDHRIHLARKK 323
            + + +  +       +++
Sbjct: 305 KLYKLIQSLAELEKQVKQE 323


>gi|170288564|ref|YP_001738802.1| DNA polymerase III, delta subunit [Thermotoga sp. RQ2]
 gi|170176067|gb|ACB09119.1| DNA polymerase III, delta subunit [Thermotoga sp. RQ2]
          Length = 324

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G       +  K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 7   TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
               K      L E++     +  I I           R        V      P     
Sbjct: 64  FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            ++ IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V+++
Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 171

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +        ++   A  +GK   A  L             +       F  L KI ++  
Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 230

Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
                      ++ ++    +       +   L    + W   ++   L+
Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 275


>gi|240016035|ref|ZP_04722575.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA6140]
          Length = 332

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +    +   +A     + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREVYTADASF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
             +     +  + +       ++  A ++G +     L D               +A  +
Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272


>gi|332284897|ref|YP_004416808.1| DNA polymerase III, delta subunit [Pusillimonas sp. T7-7]
 gi|330428850|gb|AEC20184.1| DNA polymerase III, delta subunit [Pusillimonas sp. T7-7]
          Length = 350

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 123/335 (36%), Gaps = 29/335 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +  L+ E  +  +       +     ++++A   + + S       + SLF 
Sbjct: 22  PLYIVSGDEPLLVIESCDALRAAAGQAGYTERVSLIMDA---RSDWSAAIGATQNVSLFG 78

Query: 82  KKKIIL--IENLSTEKKVLDCLEEII----IKNICNHIIIIKSNEIKKNNTLRK----IA 131
            ++++   I      K   + L ++      + + + +++I    + K     K    + 
Sbjct: 79  DRRLVELAIPGGKPGKTGAETLLKLADMVQAQALADTMLMISLPRLDKTTRNTKWAQGLF 138

Query: 132 EKFTSV--LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           E  TS+   +I      +  L   I + L    + +     + +   + G+ +A+  E+Q
Sbjct: 139 EAGTSIEVASIG-----RPALPRWIAQRLARQDQQLDNATLEWMADKVEGNLLAAHQEVQ 193

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL         I+   V+  + +     I  + +A ++G+   A+ +     A       
Sbjct: 194 KLGL-LYPSGQISGPEVERAVLNVARYDIFGLRDAMLKGEAAKALTILTGLRAEGEALPL 252

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK---NLV 306
           +L     + ++L ++   +  S       +++    +   +  +L+++L           
Sbjct: 253 VLWAVGDEVRVLARLAASR-ASGHDLAAEMRRQR--VFGPREQLLRQTLGRLPVQAWPAA 309

Query: 307 RETLHKIDHRIHLARKKKYLEKNI--IFQTILYIA 339
            +  H ID  I   +    L+     + + +L IA
Sbjct: 310 VQHAHDIDKLIKGLKVPGRLDDPWEELGRLVLRIA 344


>gi|61657398|emb|CAI44314.1| hypothetical protein [Thermotoga petrophila]
          Length = 329

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G       +  K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 12  TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 68

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
               K      L E++     +  I I           R        V      P     
Sbjct: 69  FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 117

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            ++ IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V+++
Sbjct: 118 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 176

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +        ++   A  +GK   A  L             +       F  L KI ++  
Sbjct: 177 VFTYQTPGYDDFCFAVSEGKRKIAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 235

Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
                      ++ ++    +       +   L    + W   ++   L+
Sbjct: 236 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 280


>gi|160884621|ref|ZP_02065624.1| hypothetical protein BACOVA_02610 [Bacteroides ovatus ATCC 8483]
 gi|156110360|gb|EDO12105.1| hypothetical protein BACOVA_02610 [Bacteroides ovatus ATCC 8483]
          Length = 339

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL     + 
Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATAMLADFVGSDLSRLTGELEKLIITLPVG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  +   +   +I+ + +  I
Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337


>gi|148269878|ref|YP_001244338.1| DNA polymerase III, delta subunit [Thermotoga petrophila RKU-1]
 gi|147735422|gb|ABQ46762.1| DNA polymerase III, delta subunit [Thermotoga petrophila RKU-1]
          Length = 324

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G       +  K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 7   TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
               K      L E++     +  I I           R        V      P     
Sbjct: 64  FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            ++ IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V+++
Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDKKITVEDVEEV 171

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +        ++   A  +GK   A  L             +       F  L KI ++  
Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKIAHSLLSQLWK-TTEPVVIATVLANHFLDLFKILVLVT 230

Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
                      ++ ++    +       +   L    + W   ++   L+
Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVINHLLY 275


>gi|227327378|ref|ZP_03831402.1| DNA polymerase III subunit delta [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 323

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 79/210 (37%), Gaps = 4/210 (1%)

Query: 62  EIQKNISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
           ++  +    ++   + SLF+ ++  ++++        + + L ++      + ++I++ +
Sbjct: 38  DLHTDWDAIFSTCQALSLFASRQSLLLVLPENGPNAAMGENLVKLSGLLHPDILLILRGH 97

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           ++ K        +      + I+C    +  L   + +     + ++ ++A Q++     
Sbjct: 98  KLTKAQENSAWFKALAQDSVYINCLTPEQAQLPRWVAQRAKSMKLTLDEQATQLICYCYE 157

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A    L++L+     D  +T   V+  + D         ++A + GK   A  +  
Sbjct: 158 GNLLALSQALERLAL-LYPDGKLTLPRVESAVNDAAHFTPFHWLDALLAGKGKRAWHILQ 216

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
                      LL    ++   L  +    
Sbjct: 217 QLKQEDCEPVILLRTLQRELLQLLALKRRM 246


>gi|300780674|ref|ZP_07090529.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533660|gb|EFK54720.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 318

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 117/332 (35%), Gaps = 28/332 (8%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H V    G D  L  E   Q   NI         +  L A ++ +       +  S SLF
Sbjct: 6   HPVHFVVGEDDFL-AERATQ---NIIAQVSPAAEVTTLRAGDVTEGE---LLQATSPSLF 58

Query: 81  SKKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFT 135
           +++++++I++  L+ ++     L+  +       +II+ S + +  +     RK+AE   
Sbjct: 59  AEERVVVIKDTDLAGKEPTELLLQAAVDPAPGMTLIIVHSGKGRNKSYVQKFRKVAEVHA 118

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-- 193
           +       P N+      +           + +    LL ++G D     + + +L +  
Sbjct: 119 AD------PLNQRDRQGWVMNEFRSHGIRPTPDVVGALLESVGSDLRELASAIAQLVADT 172

Query: 194 --YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                 +  IT   V+        +   +I +  + G+   A+      L   +   A+ 
Sbjct: 173 KDASGTNSEITVADVRAYYTGVAEVSGFDIADQAVAGRTDRALASTRRALQLGISPVAIA 232

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                K   + K++     +  + +++ +    N    K+ +  +  R W+ + V   + 
Sbjct: 233 AALAHKVGDIAKLY----QTRGNPDQVARTIGMNPYVAKKTM--QIARGWSGDAVSRAVI 286

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
            +       + +       I   +  IAQ A 
Sbjct: 287 IVAELDAEVKGQGGDPDFAIEDAVRRIAQLAA 318


>gi|239813443|ref|YP_002942353.1| DNA polymerase III subunit delta [Variovorax paradoxus S110]
 gi|239800020|gb|ACS17087.1| DNA polymerase III, delta subunit [Variovorax paradoxus S110]
          Length = 361

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 96/300 (32%), Gaps = 18/300 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L  E  +  +       +   S   +       + S       S SLF+ 
Sbjct: 19  LYAIHGDEPLLAQEAADAIRTAARAAGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFAD 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           K+I+ I   +    K     L+++      N   + ++    + K             + 
Sbjct: 77  KQIVEIRIPSGKPGKDGSIALQQLAESAQGNDSTLTLVMLPRLDKATRTGAWFSALENNG 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLS 192
           +++   P  +  L   I + L +  + +          Q     + G+ +A+  E+QKL+
Sbjct: 137 VSLQVDPIERNALPQWIAQRLGLQGQRVMPGDEGQRTLQFFADRVEGNLLAAHQEIQKLA 196

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                   ++ + V+  + +     + ++  A + G       + D   A       + +
Sbjct: 197 L-LHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRVARMLDGLQAEGEAEVLVHY 255

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLRIWNKNLVRETLH 311
              +  + L+++                   +N I   +    +  L   +  ++   L 
Sbjct: 256 TIAEDIRALKRVKDAMAAGRPLPM----ALRENRIWGPRERAFERVLPRLDDRMLARLLR 311


>gi|297588463|ref|ZP_06947106.1| DNA-directed DNA polymerase III delta subunit [Finegoldia magna
           ATCC 53516]
 gi|297573836|gb|EFH92557.1| DNA-directed DNA polymerase III delta subunit [Finegoldia magna
           ATCC 53516]
          Length = 332

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 123/327 (37%), Gaps = 32/327 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            ++   N  LS+ + + +G +K  I + ++  KK+      D + +          +   
Sbjct: 6   AKQKLDNNLLSN-LILIHGEEKFYIEKYLSLIKKHYKAQSFDEYEIS---------DFEK 55

Query: 70  FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121
            ++   +  +FS K++ILI         +S  K+ +D L   I +     +II+ S   +
Sbjct: 56  IYSSSETIPMFSDKRLILIDDVDLTKTGISKNKESIDNLLPYIREIPEYTLIIMTSYGNV 115

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ-----KSISKEAKQILLAN 176
            K+  L++I         I     N+  L   I   L   +      +I  E    L+ N
Sbjct: 116 FKSKFLKEII---NYGSDIEFNKLNRNQLKAYIINYLKGKKINNNIVNIFIEYSLYLIKN 172

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                I   NEL K  +  LE   ITE  +  +I + +   I ++ ++     +   I  
Sbjct: 173 SEKTLIDVNNELDKFIN--LEKDEITEHDLNSLI-NQYDKNIFDLTDSIASKDLSKTIYY 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  +     +   LH  ++ F+ L     IKE   +   +        I   + N +Q 
Sbjct: 230 LNLLINDTSDTFKALHMVIRLFRNLL---YIKELLRLKVSQTEITKRVKISSYELNKVQS 286

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323
            ++ W  + +R  +HK+       +  
Sbjct: 287 FVKNWRYDQLRFAIHKMYEIETTLKTN 313


>gi|167946137|ref|ZP_02533211.1| DNA polymerase III subunit delta [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 204

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 86/202 (42%), Gaps = 13/202 (6%)

Query: 115 IIKSNEIKK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
           +I + ++ +   N+   K  E+   ++ I  +P     L+  +E  L     +      +
Sbjct: 3   LITAPKLDRAQQNSKWVKGVERLGVLVLI--WPIEGQRLLPWLERRLRDVGLTPEPGVVE 60

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           +L   + G+ +A++ E++KL        ++ ++ + + + D+    +  +++A +  +  
Sbjct: 61  MLSERIEGNLLAAKQEIEKLLL-LHGPGVVDQEQLAESVADSARFDVFGLVDALLAREAG 119

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
             + + +   A  + +  +L    ++ + L ++  + E    S + ++      +   ++
Sbjct: 120 RGLRMLEHLQAEGVVAPVVLWALAREIRALAEMAAMVE-QGRSVDSVMAAQR--VWEKRK 176

Query: 292 NILQESLRI----WNKNLVRET 309
            ++++ L+     W + L+   
Sbjct: 177 PLMRKGLKRRAAVWRRLLIDCA 198


>gi|182418282|ref|ZP_02949577.1| DNA polymerase III, delta subunit [Clostridium butyricum 5521]
 gi|237666405|ref|ZP_04526390.1| DNA polymerase III, delta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377664|gb|EDT75208.1| DNA polymerase III, delta subunit [Clostridium butyricum 5521]
 gi|237657604|gb|EEP55159.1| DNA polymerase III, delta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 344

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 15/279 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++F G D+ LI + I+              +L+ ++ +    +     N   +     ++
Sbjct: 20  YVFCGLDEELIKDGIDIIINREVTDDFKELNLIKIDGMNTTFD--DIVNACETMPFMGER 77

Query: 84  KIILIENL--------STEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTLRKIAE 132
           K++L+           ST  K+ + L++ I       I++   +  ++  K N  +K+  
Sbjct: 78  KVVLVYRATFLQEKCDSTGTKIYNELKKYISDMPPYTILVMYYLCKDKRDKPNKNKKLTP 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                  + C    K   +  + +     +KSI +         +  +    + E+ KL 
Sbjct: 138 IEKYFPVVFCDKLKKDKFIKKVADIFKEKEKSIGRTELAYFCDKVQNNFDIIKREIDKLI 197

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           SY      I +  +  +I  ++   I +++      KI  AI +    L        ++ 
Sbjct: 198 SYSEGRD-IKKSDIDILISSSNEEDIFDLVELIASRKIDKAIDIMKEILYKSDQHMLIIS 256

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
              + F  L +I I         +  + +        ++
Sbjct: 257 AVEKHFARLYEIKIGM-SQGKRVQNFMSEYRLPQFVCEK 294


>gi|307266448|ref|ZP_07547984.1| DNA polymerase III, delta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918556|gb|EFN48794.1| DNA polymerase III, delta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 338

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 116/299 (38%), Gaps = 18/299 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG ++ L+ + + + K  I +      + VV+     ++ +        +  LFS
Sbjct: 17  NVYLFYGEERFLLLDALKRIKAKILMPETMDMNYVVIEKDSPEECMEAIIENCETLPLFS 76

Query: 82  KKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIA 131
             K+++++N   +         K++ + LEE +     + +++I   E I     L K  
Sbjct: 77  DYKLVVVKNEEEQLSKLGDKELKRLTNYLEEKVTSPQSSIVLVIIGGEKIDLRKKLYKFI 136

Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           EK   ++       +  ++        L    K + K   + ++ ++G D  A  NE+ K
Sbjct: 137 EKIGKIVYFQRLSFEEAVNYAGY---FLKKSGKKVKKSDVEYIVKSVGTDLYAIVNEIHK 193

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L SY  +   I  + +K+++       I  ++NA    K   A  +    L        +
Sbjct: 194 LVSYS-DSEEIEMEKMKEVLTINLQQNIFNLVNAIGMKKEKEAYKVLHTLLEKGEVPLII 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L   +++ +L+ KI    E      + I          ++   L    R++ K  +   
Sbjct: 253 LSMIVRQMRLITKIKS-FEGKFGDKKTIASSLGVPYFAVEE--LMRQSRLFKKEELERA 308


>gi|305667006|ref|YP_003863293.1| hypothetical protein FB2170_12161 [Maribacter sp. HTCC2170]
 gi|88709241|gb|EAR01475.1| hypothetical protein FB2170_12161 [Maribacter sp. HTCC2170]
          Length = 333

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 34/276 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +   I  +    +KN+       F+ +VL   E    I    +      + +
Sbjct: 18  PIYFLHGEEPYYIDRIAEFIEKNVLTEEERGFNQMVLYGKE--ATIDDIVSNAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII------------KSNEIKKNNTL-- 127
           ++++++I+      + ++ L     K     +++                 I K+  L  
Sbjct: 76  ERQVVIIKEAQELSRTIEQLVSYAEKPQPTTVLVFCYKYKKLDKRKKLYKTINKSGVLFE 135

Query: 128 -RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
            +K+ E                 + + + + L     SIS +A  +L+  LG D      
Sbjct: 136 SKKLYENQ---------------VSEWLRKVLHGKDYSISHKAATLLVEYLGTDLSRISK 180

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL KL+    +   IT   +++ I  +      E+  A  +  I  A  + ++F  +   
Sbjct: 181 ELDKLTLVLQKGSQITPADIEEHIGISKDYNNFELKKAIGERNILKATKIINYFAQNPKD 240

Query: 247 SHALLHGFLQK--FQLLEKIHIIKECSNISFEKIIQ 280
           +  +L   L    F  L + H + + S  +    ++
Sbjct: 241 NPFVLTITLLHSFFSQLLQYHGLNDHSPKNVASALR 276


>gi|319787825|ref|YP_004147300.1| DNA polymerase III subunit delta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466337|gb|ADV28069.1| DNA polymerase III, delta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 345

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 114/343 (33%), Gaps = 17/343 (4%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            ++  + + ++         V++  G +   + E  +  +              V  A  
Sbjct: 2   ELKPDQLVAQAASQPL--RPVYLVAGPETLHVLEAADAIRARARAEGA---EREVFEAEG 56

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            + +        ++  LF+ ++++ +   +    K   + +         +  ++I +NE
Sbjct: 57  REPDWDALSASFDAPGLFASRRLLELRLPSGKPGKTGSEVIMSFCANPAPDVTLLIVANE 116

Query: 121 IKKNNTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             K +   K  E      V++I+ +      L   IE  L       S EA Q L   + 
Sbjct: 117 WSKAHQT-KWYEAVGKQGVVSIA-WALKPHELPGWIERRLRDRGLRASPEAVQGLAERVE 174

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           G+ +A+  E+ KL+        +    ++ ++ D     +  ++   + G       +  
Sbjct: 175 GNLLAAAQEIDKLALLAPG-ATLDLATMESLVADAARYDVFRLVETALSGHSAQVRRMLA 233

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              A       L+   +++      +   +        ++  +    +   ++   + +L
Sbjct: 234 GLRAEGEQVAGLMPVVIRELLRAAALARAQARGANLAAEMTSQ---GLWVARQAPFKRAL 290

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKN--IIFQTILYIA 339
           +     L    L     R+  A K +       ++ + +L IA
Sbjct: 291 QRHATPLRWNRLAAYASRVDRAAKGRAAGDPWVLLERLLLAIA 333


>gi|297621209|ref|YP_003709346.1| putative DNA polymerase III delta subunit [Waddlia chondrophila WSU
           86-1044]
 gi|297376510|gb|ADI38340.1| putative DNA polymerase III delta subunit [Waddlia chondrophila WSU
           86-1044]
          Length = 337

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 130/342 (38%), Gaps = 23/342 (6%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALE 62
            K ++++  + F S  V++   +D    FE      K      +    D   L  L+   
Sbjct: 10  DKHLKEAGPHHFAS--VYLLISADY---FERKQLVTKLCGAVLNGSPLDEHHLKKLDGA- 63

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEI 121
              ++     E+ S + F+KK++++ EN    KK     L+        +  +++ S+ +
Sbjct: 64  -VHSVHELMRELGSFNFFAKKRVVIYENAGELKKEDAGVLKSYYEHPNPSVFLVLSSSSV 122

Query: 122 KKNNTLRKIAEKFTSVLAISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            + ++  K  EK   +L I      + +  L D          K  +    Q L+ ++  
Sbjct: 123 NRGSSFYKQTEKAGVILDIEPEKPWEKEAALSDYAAAWFKKNGKKTASGVNQALVKSVNN 182

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D+     E++K+  Y  E+  ++ + ++ I        + ++ +A    K   A+ +++ 
Sbjct: 183 DQAQLLQEMEKILCYLGENEEVSFEDLRVIGSGQTSYTVWQLGDAVFSRKGKEALEISNQ 242

Query: 240 FLASKMPSHALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            L        LL     +FQ  L       E      +  +      ++  +   +Q++L
Sbjct: 243 LLGDGESLIGLLRALRMQFQTRLLGATAQPEE----VQSRVPYLRGPLLHKQ---IQQAL 295

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
           +       RE +  ID    LA+     ++ I+   ++ +A 
Sbjct: 296 QY-GAESCREGVLLIDEAERLAKNSGIADRCILETLMIKLAV 336


>gi|326389876|ref|ZP_08211440.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994144|gb|EGD52572.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 338

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 116/299 (38%), Gaps = 18/299 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++FYG ++ L+ + + + K  I +      + VV+     ++ +        +  LFS
Sbjct: 17  NVYLFYGEERFLLLDALKRIKAKILMPETMDMNYVVIEKDSPEECMEAIIENCETLPLFS 76

Query: 82  KKKIILIENLSTE---------KKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIA 131
             K+++++N   +         K++ + LEE +     + +++I   E I     L K  
Sbjct: 77  DYKLVVVKNEEEQLSKLGDKELKRLTNYLEEKVTSPQSSIVLVIIGGEKIDLRKKLYKFI 136

Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           EK   ++       +  ++        L    K + K   + ++ ++G D  A  NE+ K
Sbjct: 137 EKIGKIVYFQRLSFEEAVNYAGY---FLKKSGKKVKKSDVEYIVKSVGTDLYAIVNEIHK 193

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L SY  +   I  + +K+++       I  ++NA    K   A  +    L        +
Sbjct: 194 LVSYS-DSEEIEMEKMKEVLTINLQQNIFNLVNAIGMKKEKEAYKVLHTLLEKGEVPLII 252

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L   +++ +L+ KI    E      + I          ++   L    R++ K  +   
Sbjct: 253 LSMIVRQMRLITKIKS-FEGKFGDKKTIASSLGVPYFAVEE--LMRQSRLFKKEELERA 308


>gi|219683760|ref|YP_002470143.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190795|ref|YP_002968189.1| hypothetical protein Balac_0757 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196201|ref|YP_002969756.1| hypothetical protein Balat_0757 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|219621410|gb|ACL29567.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249187|gb|ACS46127.1| hypothetical protein Balac_0757 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250755|gb|ACS47694.1| hypothetical protein Balat_0757 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793784|gb|ADG33319.1| hypothetical protein BalV_0731 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 320

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG D+ L  +        +   + D   L  ++A     N    ++E  S SL S++
Sbjct: 8   LLIYGGDEYLNEQNARDAVYRLLEEHRD-AELARVDARSADANS---FDEAVSPSLLSQR 63

Query: 84  KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++ +E+    +  +LD +     +   +     ++++     K  ++  +  +    + 
Sbjct: 64  SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 123

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D     ++ + +      + I  +A Q L+  LG         +++L  +  +D 
Sbjct: 124 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 182

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +    V   +     +    + +  + GK   A++     LA      AL+     + +
Sbjct: 183 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 242

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K   I++      +  + +         R      L  W    +   + ++      
Sbjct: 243 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 295

Query: 320 ARKKK 324
            + + 
Sbjct: 296 CKSRG 300


>gi|27363753|ref|NP_759281.1| DNA polymerase III subunit delta [Vibrio vulnificus CMCP6]
 gi|27359869|gb|AAO08808.1| DNA polymerase III, delta subunit [Vibrio vulnificus CMCP6]
          Length = 341

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 13/304 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  LI E  +  +K         F      A++   + +  ++   + SLFS
Sbjct: 18  PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +E         + + L  +      + +++I  +++ K     K  +       
Sbjct: 75  SRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC   +   L   +     +      ++A Q+L     G+  A    L+KL+     D
Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    +++ +   +   +   I+A ++GK      +     A  + +  LL    +  
Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQK-- 251

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317
              E + +++    +    ++Q  EK+ I   K+ +   +L       +R+ L  +    
Sbjct: 252 ---ELLLLLQMQQQLQQSSMMQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308

Query: 318 HLAR 321
            LA+
Sbjct: 309 ILAK 312


>gi|21221023|ref|NP_626802.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|289771700|ref|ZP_06531078.1| DNA polymerase III, delta subunit [Streptomyces lividans TK24]
 gi|6714670|emb|CAB66242.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|289701899|gb|EFD69328.1| DNA polymerase III, delta subunit [Streptomyces lividans TK24]
          Length = 336

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 114/340 (33%), Gaps = 14/340 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + + T N      V +  G +  L+ +   Q     +        +  L   ++Q    T
Sbjct: 8   MARKTANDDPLAPVTLAVGQED-LLLDRAVQEVVAAAKAADADTDVRDLTPDQLQ--PGT 64

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +        ++++ +   K    L
Sbjct: 65  LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGKGVL 123

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +     +A          L   +        +S + EA Q L+  +G D     + 
Sbjct: 124 DAGRKAGAREVACPKMTKPADRLAF-VRAEFRTAGRSATPEACQALVDAIGSDLRELASA 182

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L+     +  + E  V              + +  ++G+   A+    + LA+ +  
Sbjct: 183 VSQLT--ADVEGTVDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 240

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +        Q +  I  +          + ++      P K + +++ +R W  + V 
Sbjct: 241 VLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVS 295

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             L  +       +      +  + + ++ IA+ A     
Sbjct: 296 VALRAVAEADAGVKGGGDDPEYALEKAVVIIARAARSRGR 335


>gi|297194433|ref|ZP_06911831.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718758|gb|EDY62666.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 333

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 100/294 (34%), Gaps = 16/294 (5%)

Query: 59  NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHII 114
           +  ++  +     T   E+ S SLF+++K++++ N        +  ++  +        +
Sbjct: 50  DVRDLTADQLLPGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPAEEITL 108

Query: 115 IIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQI 172
           ++      K   L   A K      ++C P        L  +        +S + EA Q 
Sbjct: 109 VLLHPGGAKGKGLLDAARKA-GAREVAC-PKTTKPAERLGFVRSEFRALGRSATPEACQA 166

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L+  +G D     + + +L+     +  + E  V              + +  ++G+   
Sbjct: 167 LVDAIGSDLRELASAVSQLT--ADVEGTVDEAVVGRYYTGRAEASSFNVADRAVEGRAAE 224

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+    + L++ +    +        Q +  I  +          + ++      P K +
Sbjct: 225 ALEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKID 279

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            +++ +R W  + V   L  +       +      +  + + ++ IA  A    
Sbjct: 280 RVRQQMRGWTPDGVAMALRAVAEADAGVKGGGDDAEYALEKAVVTIATAARSRR 333


>gi|289427206|ref|ZP_06428922.1| DNA polymerase III, delta subunit [Propionibacterium acnes J165]
 gi|295130459|ref|YP_003581122.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK137]
 gi|289159675|gb|EFD07863.1| DNA polymerase III, delta subunit [Propionibacterium acnes J165]
 gi|291376258|gb|ADE00113.1| DNA polymerase III, delta subunit [Propionibacterium acnes SK137]
 gi|313764598|gb|EFS35962.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772364|gb|EFS38330.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807375|gb|EFS45862.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL087PA2]
 gi|313809884|gb|EFS47605.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL083PA1]
 gi|313813079|gb|EFS50793.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL025PA1]
 gi|313816135|gb|EFS53849.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818423|gb|EFS56137.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820185|gb|EFS57899.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL036PA1]
 gi|313823007|gb|EFS60721.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825065|gb|EFS62779.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827962|gb|EFS65676.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830798|gb|EFS68512.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL007PA1]
 gi|313834015|gb|EFS71729.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL056PA1]
 gi|314915592|gb|EFS79423.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918453|gb|EFS82284.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL050PA1]
 gi|314919941|gb|EFS83772.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925414|gb|EFS89245.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931955|gb|EFS95786.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955822|gb|EFT00222.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958304|gb|EFT02407.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL002PA1]
 gi|314960141|gb|EFT04243.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967979|gb|EFT12078.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973222|gb|EFT17318.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL053PA1]
 gi|314975894|gb|EFT19989.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978347|gb|EFT22441.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983638|gb|EFT27730.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL005PA1]
 gi|314987586|gb|EFT31677.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL005PA2]
 gi|314990071|gb|EFT34162.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL005PA3]
 gi|315080788|gb|EFT52764.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL078PA1]
 gi|315084457|gb|EFT56433.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085797|gb|EFT57773.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088786|gb|EFT60762.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL072PA1]
 gi|315096131|gb|EFT68107.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098395|gb|EFT70371.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101249|gb|EFT73225.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL046PA1]
 gi|315108473|gb|EFT80449.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326050|gb|EGE67840.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL096PA2]
 gi|327330756|gb|EGE72502.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL097PA1]
 gi|327332078|gb|EGE73815.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL096PA3]
 gi|327443283|gb|EGE89937.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL013PA2]
 gi|327446067|gb|EGE92721.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL043PA2]
 gi|327447951|gb|EGE94605.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450921|gb|EGE97575.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453729|gb|EGF00384.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753609|gb|EGF67225.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754343|gb|EGF67959.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754829|gb|EGF68445.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760449|gb|EGF74017.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL099PA1]
 gi|332675296|gb|AEE72112.1| DNA polymerase III, delta subunit [Propionibacterium acnes 266]
          Length = 340

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L+ +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 27  ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             I+++  +S  +K + D +            +I++    +K    L K+ +    ++  
Sbjct: 83  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141

Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               D      + D I      G   +  +A   L   LG D       + +L+S    +
Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGNDLRTLAAAVGQLASDS-PN 197

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + V         +    + +A+++G++ +A+    + L+  +   A+     +  
Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPAAVTAAMARGL 257

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ +   
Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313

Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344
            A K   ++ +   +++L     A +
Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339


>gi|116071733|ref|ZP_01469001.1| hypothetical protein BL107_06274 [Synechococcus sp. BL107]
 gi|116065356|gb|EAU71114.1| hypothetical protein BL107_06274 [Synechococcus sp. BL107]
          Length = 321

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       I+   ++         +L  L+  E  + I     E  +    +
Sbjct: 2   PIHLIWGDDAAARDRAIDGLIQSRVDPSWSSLNLSRLDGAETGQAIQAL-EEARTPPFAT 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
            ++++L++          ++ D  E  +     +  +++ +       ++   TL+K  +
Sbjct: 61  GERLVLLQRSPFCNGCPSELADRFEAALELIPDSSHLVLVNPSKPDGRLRTTKTLQKRIK 120

Query: 133 KFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +   +      P   +      L++ +      ++  +A   L+  +G D     +EL+K
Sbjct: 121 QGLDLEQSFPLPTAWDGAGQRQLVQRTADALSLTVKPDAIDALVEAIGTDSARLESELRK 180

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS        IT   V +++       +  + +A + G    AI   D  + +  P+  +
Sbjct: 181 LSLRT---TTITAALVTELVGGRATNAL-AVGDALLDGNAGEAIARWDALIEAGEPALRI 236

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     + +    + ++++        I +       P +  ++++ L+          L
Sbjct: 237 VATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRPPKRFLSLL 295

Query: 311 HKIDHRIHLARKKKYLEKN 329
            ++     L ++       
Sbjct: 296 GRLLEVEALLKRGALPGNA 314


>gi|260435924|ref|ZP_05789894.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 8109]
 gi|260413798|gb|EEX07094.1| DNA polymerase III, delta subunit [Synechococcus sp. WH 8109]
          Length = 419

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 108/321 (33%), Gaps = 21/321 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       I+     I        +L  L+  +  + +     E  +    +
Sbjct: 100 PIHLLWGDDAAARDRAIDALIGQIVDPSWRSLNLSRLDGADAGQALQAL-EEARTPPFAT 158

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
            ++++L++          ++ D  E  +        +++ +   K +  LR        +
Sbjct: 159 GERLVLLQRSPFCNGCPSELADRFEGALELIPDTSHLVLVNPA-KPDGRLRTTKTLQKRI 217

Query: 138 LA---------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            +         +    D       L++ +       +  +A   L+  +G D     +EL
Sbjct: 218 KSGLDHEQSFPLPAAWDGNGQ-RQLVQRTAEALGLKVEPDAIDALVDAIGTDSARLESEL 276

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KLS     D  I+   V++++       +  + +A ++G    AI   D  + +  P+ 
Sbjct: 277 RKLSL---RDTSISAARVQELVGGRSTNAL-AVGDALLEGNPGEAIARWDALIEAGEPAL 332

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            ++     + +    + ++++        I +       P +  ++++ L+  +      
Sbjct: 333 RIVATLTGQIRGWLWVSLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQGRSPKRFLS 391

Query: 309 TLHKIDHRIHLARKKKYLEKN 329
            L ++       ++       
Sbjct: 392 LLGRLLEVEAQLKRGAQPGDA 412


>gi|183601707|ref|ZP_02963077.1| hypothetical protein BIFLAC_03607 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|183219313|gb|EDT89954.1| hypothetical protein BIFLAC_03607 [Bifidobacterium animalis subsp.
           lactis HN019]
          Length = 339

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG D+ L  +        +   + D   L  ++A     N    ++E  S SL S++
Sbjct: 27  LLIYGGDEYLNEQNARDAVYRLLEEHRD-AELARVDARSADANS---FDEAVSPSLLSQR 82

Query: 84  KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++ +E+    +  +LD +     +   +     ++++     K  ++  +  +    + 
Sbjct: 83  SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 142

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D     ++ + +      + I  +A Q L+  LG         +++L  +  +D 
Sbjct: 143 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 201

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +    V   +     +    + +  + GK   A++     LA      AL+     + +
Sbjct: 202 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 261

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K   I++      +  + +         R      L  W    +   + ++      
Sbjct: 262 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 314

Query: 320 ARKKK 324
            + + 
Sbjct: 315 CKSRG 319


>gi|37679093|ref|NP_933702.1| DNA polymerase III subunit delta [Vibrio vulnificus YJ016]
 gi|37197835|dbj|BAC93673.1| DNA polymerase III, delta subunit [Vibrio vulnificus YJ016]
          Length = 341

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 13/304 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G++  LI E  +  +K         F      A++   + +  ++   + SLFS
Sbjct: 18  PVYLIFGNEPLLIQESRSAIQKAAFQQG---FEERHRFAVDASLDWNQVYDCCQALSLFS 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
            +++I +E         + + L  +      + +++I  +++ K     K  +       
Sbjct: 75  TRQLIELELPESGVNVSIANELLSVAQILHADIMLVIIGSKLTKAQENAKWFKTLSQQGH 134

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            ISC   +   L   +     +      ++A Q+L     G+  A    L+KL+     D
Sbjct: 135 WISCLTPDNQRLPQFVLNRCRLLNLKPDQQAVQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +    +++ +   +   +   I+A ++GK      +     A  + +  LL    ++ 
Sbjct: 194 GELNLIRLEESLSRHNHFTVFHWIDALLEGKANRCQKILRQLEAEDIEAIILLRSLQKEL 253

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRI 317
            L     +++    +    ++Q  EK+ I   K+ +   +L       +R+ L  +    
Sbjct: 254 LL-----LLQMQQQLQQSSMMQVFEKHRIWQNKKPLYTAALTRLKSTKLRQLLTLLAKAE 308

Query: 318 HLAR 321
            LA+
Sbjct: 309 ILAK 312


>gi|50842383|ref|YP_055610.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           KPA171202]
 gi|50839985|gb|AAT82652.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           KPA171202]
          Length = 321

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 121/328 (36%), Gaps = 21/328 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L+ +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 8   ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 63

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKI----AEKFTS 136
             I+++  +S  +K + D +            +I++    +K    L K+     E    
Sbjct: 64  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVETAKV 123

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +           + D I      G   + ++A   L   LG D       + +L+S   
Sbjct: 124 DVPKP------WAIPDFIVNEARRGHLDMDRDAVNALHQALGNDLRTLAAAVGQLASDS- 176

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +  + V         +    + +A+++G++ +A+    + L+  +   A+     +
Sbjct: 177 PNGRVGAEAVTTYFGGRAEISAFNVSDASLEGRLPDALEALRWALSIGVQPAAVTAAMAR 236

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ + 
Sbjct: 237 GLRSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNT 292

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTACK 344
              A K   ++ +   +++L   + A +
Sbjct: 293 CDAAVKGAAVDPDYALESMLIAIEEARQ 320


>gi|306820577|ref|ZP_07454208.1| DNA-directed DNA polymerase III delta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304551394|gb|EFM39354.1| DNA-directed DNA polymerase III delta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 344

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 111/304 (36%), Gaps = 31/304 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL----NALEIQKNISTFWNEINSTS 78
           V + YG +       I +F +N+  +  + F  +      +  +++ NI    N   S  
Sbjct: 17  VCLVYGEE----RYEIEKFIENMKESLSESFRQLNFISVDSEYDVETNIDFLINSCESVP 72

Query: 79  LFSKKKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
              +K+++L++N +  +              L+  +   + +  ++    ++ K + L K
Sbjct: 73  FMDEKRVVLVKNSNLFQTSTTKIYSNDDIIKLKNYLENPLQSTRLVFAPTKVDKRSELYK 132

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIAS-- 184
           +  K   V  I+C   +KI     +         +I    K   +   G    D      
Sbjct: 133 LINKKYEV--INCDRLDKISFSRWVSNRFKEKNITIDNHTKDYFIQRCGYLNKDSQVMLL 190

Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              +E++KL         ++ + ++ +        + + I+      I          + 
Sbjct: 191 DVESEIEKLRV-NKTQKNLSIEDIEKLNLLIEENNVFKYIDYLFSKDIEKVYNTTKQIIF 249

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           S   S  +L    ++  LL KI+I++  +  S E I +        +K++++   L+ + 
Sbjct: 250 S-FNSILVLSLIGRQISLLMKIYILR-KNGCSQESIAKILSLQAFVIKKDMI--QLKKYT 305

Query: 303 KNLV 306
            + +
Sbjct: 306 FDEL 309


>gi|229495978|ref|ZP_04389702.1| DNA polymerase III, delta subunit family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317070|gb|EEN82979.1| DNA polymerase III, delta subunit family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 347

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 11/277 (3%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
           H+ ++  +    L   +F+  G +   I  L+    ++         S  +L   E+   
Sbjct: 13  HQLVKSFSSGKELPPLLFLG-GEESYYIDRLVELLAEHYLPREEWALSRTILYGSELS-- 69

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--N 124
           +    + I S+SL   +++ +I  ++  K + + +E I        +++  + + ++   
Sbjct: 70  LPELRDTILSSSLLGGRRLYIIREVNAIKGLDEIVEAIPSIQPETTVVLCYNGDPERAAR 129

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           + L+++ E    +        N      LI ++  +   ++  +A   L   +G +    
Sbjct: 130 SLLKRLTEAQVPLFLSPKMR-NSRDTASLIRDAADLLHITVEPDAMGALYDFIGTNGATL 188

Query: 185 RNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF--FL 241
            +EL+KL+        ++T   V+  +  +      E++NA +  +   A  LA +    
Sbjct: 189 YSELRKLAVLASGRGGMVTRAMVEQNVGISREYSPYELLNALVAKQRAKAYKLARYMALN 248

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
             + P   +L      F  L  + ++ +  NIS + +
Sbjct: 249 EKRYPLPIILSTLYTYFANL--MIVMYQPRNISADDV 283


>gi|91790429|ref|YP_551381.1| DNA polymerase III subunit delta [Polaromonas sp. JS666]
 gi|91699654|gb|ABE46483.1| DNA polymerase III, delta subunit [Polaromonas sp. JS666]
          Length = 374

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 117/337 (34%), Gaps = 22/337 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L+ E  +  +       +   ++  +       + S       S SLF+ 
Sbjct: 24  LYTLHGDEPLLVQEFADALRAAAREQGYTERTVHTVAGAHF--DWSEVLASGGSLSLFAD 81

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           ++I+ I   +    K     L+++  +   +   + ++    +              +  
Sbjct: 82  RQIVEIRIPSGKPGKDGSVALQQLAERAQGDDSTLTLVLLPRLDSMTAKGAWFGALDSFG 141

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKL- 191
           + +   P ++ +L   I + L    + ++     +   Q     + G+ +A+  E+QKL 
Sbjct: 142 VTVKFDPIDRRNLPQWIAQRLQQQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQKLG 201

Query: 192 SSY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             Y   ED +++   V++ + +     + ++  A + G+      + D   +       +
Sbjct: 202 LLYPAQEDGILSFDQVENAVLNVARYDVFKLSEAVLGGQAVRVARMLDGLQSEGESEVLV 261

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVR 307
                +  + ++++    +        + +     I   K  + +     +       + 
Sbjct: 262 HWALSEDIRSMKRVKDAIQAGRPMPMALRENRVWGI---KEKLFERVLPQMGDTTLANLL 318

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
              HK+D  +   ++  +      +Q +  +A   C+
Sbjct: 319 HAAHKVDGIVKGLKQPDWPADG--WQALHRLAGMVCR 353


>gi|319897590|ref|YP_004135787.1| DNA polymerase iii, delta subunit [Haemophilus influenzae F3031]
 gi|317433096|emb|CBY81470.1| DNA polymerase III, delta subunit [Haemophilus influenzae F3031]
          Length = 344

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLTKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 AILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKSQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   LA+++
Sbjct: 315 ELANIERLAKQE 326


>gi|52424387|ref|YP_087524.1| DNA polymerase III subunit delta [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306439|gb|AAU36939.1| HolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 345

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 112/318 (35%), Gaps = 25/318 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  + +  D    + ++      +    +    S  LF 
Sbjct: 19  KVYLLVGQDPLLLSESQDNIIQAATKSGFDEKLEIQIDNGTNWND---LFERCQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF------- 134
            K++I +        +L   + +       +  ++      K   L K+ EK        
Sbjct: 76  SKQVITLHFPENPTALLS--KNLAELISLLNSDLLLILHFGK---LTKLMEKQDWFIQSE 130

Query: 135 ---TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
               + + ++C       L   +            ++A Q+L  +   + +A +  LQ L
Sbjct: 131 QYDRNAVLVNCQTPTAEQLPRWVANRCKAMGLIAEQDAVQLLCYSYENNLLALKQTLQLL 190

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                 D  +T   VK+I+  + V    + I+A ++GK   A  +     A  +    LL
Sbjct: 191 DL-LHADHKLTFVRVKNIVEQSSVFTPFQWIDALLEGKEARARRILTGLQAEDIQPIILL 249

Query: 252 HGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNL 305
               ++   LL+      + +++     + +  +      I   +R +  ++ +      
Sbjct: 250 RSLQRELTILLQLAKPQHKTASVDSALPVAQLREGFDRLKIWQNRRPLFTQAFQRLTYRK 309

Query: 306 VRETLHKIDHRIHLARKK 323
           +   + ++     LA+++
Sbjct: 310 LYLAVQQLAELERLAKQE 327


>gi|261856329|ref|YP_003263612.1| DNA polymerase III subunit delta [Halothiobacillus neapolitanus c2]
 gi|261836798|gb|ACX96565.1| DNA polymerase III, delta subunit [Halothiobacillus neapolitanus
           c2]
          Length = 335

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 88/245 (35%), Gaps = 11/245 (4%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G D   + E      +              +       +  +  +   + SLF+++
Sbjct: 20  YVLVGDDWLQLDEARQSIARQARSAGVTERLRFEVEGRF---DWGSLKSVGANLSLFAER 76

Query: 84  KII--LIENLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           +++   I      K+  + L+ +  +    +  + + +I   ++  N          +  
Sbjct: 77  RLVDLRIPGGKPGKEGGEALKTLAAQLSNADETDDVWLISLPKLDMNAQKSVWFSALSQA 136

Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I  +P     L   IE         I  +A Q++   + G+ +A++ EL K S   L
Sbjct: 137 GVTIQFWPIGLRDLPRWIESRGAKLGLRILPDAAQLIAERVEGNLLAAKQELDKFSLLNL 196

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +T Q + + I D       ++ +A + G    A  L        + +  +L    +
Sbjct: 197 PNP-LTAQMLLENITDQSRFNPFDLGDALLDGDRSRAGHLLARLREEGVDAILILWVLSR 255

Query: 257 KFQLL 261
           + +LL
Sbjct: 256 ELRLL 260


>gi|242238542|ref|YP_002986723.1| DNA polymerase III subunit delta [Dickeya dadantii Ech703]
 gi|242130599|gb|ACS84901.1| DNA polymerase III, delta subunit [Dickeya dadantii Ech703]
          Length = 343

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 90/253 (35%), Gaps = 7/253 (2%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++  G++  L+ E  +Q +              VL+      +    ++   + SLF
Sbjct: 18  RGCYLLCGNEPLLLQESQDQIRAAAQQQEFLEHFSFVLDNAT---DWDAVFSTCQALSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           + ++ +L+   +      + + L ++      + ++II+ N++ K        +      
Sbjct: 75  ASRQTLLLNLPDAGPTAAMSEQLIKLAGLLHPDILLIIRGNKLSKAQENSAWFKTLAEQG 134

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + + C    + HL   + +     +  +   A Q++     G+ +A    L++L+     
Sbjct: 135 VYVPCLSPEQEHLPRWVAQRAKTMKLELDDAAGQLICYCYEGNLLALVQALERLTL-LYP 193

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T   V+  + D         ++A + GK   A  +             LL    ++
Sbjct: 194 DGKLTLPRVEQAVNDAAHFTPFHWVDALLAGKSKRAWHILHQLRLEDGEPVILLRTVQRE 253

Query: 258 FQLLEKIHIIKEC 270
             LL ++      
Sbjct: 254 LLLLLQLKRQMAT 266


>gi|229543794|ref|ZP_04432854.1| DNA polymerase III delta [Bacillus coagulans 36D1]
 gi|229328214|gb|EEN93889.1| DNA polymerase III delta [Bacillus coagulans 36D1]
          Length = 202

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 74/192 (38%), Gaps = 15/192 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I +   +   +        F+    +  E+   + T   +  +     
Sbjct: 15  PLYLLYGAEDYFIQKTKQKLLDHALTPEEADFNYASYDLEEV--PVETAVEDAETFPFMG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++++++  +   L+ EK+       LD LE  +       + ++ +   ++ +   L K+
Sbjct: 73  ERRLVIAHHPFFLTAEKQKQKVEHQLDKLEAYVKSPAPYTVFVLVAPYEKLDERKKLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +K            N+  L   +          I ++A + L++  G + IA  +E+ K
Sbjct: 133 IKKQ--AATFQAKKLNERELEGWLVSRAAEEGCRIDRKAAEHLISLAGTNMIALDHEINK 190

Query: 191 LSSYCLEDILIT 202
           L+ Y      IT
Sbjct: 191 LALYAGSGNEIT 202


>gi|256787813|ref|ZP_05526244.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 312

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 96/283 (33%), Gaps = 11/283 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ N        +  ++  +        ++++ +   K  
Sbjct: 38  PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 96

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 97  GVLDAGRKAGAREVACPKMTKPADRLAF-VRAEFRTAGRSATPEACQALVDAIGSDLREL 155

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L+     +  + E  V              + +  ++G+   A+    + LA+ 
Sbjct: 156 ASAVSQLT--ADVEGTVDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATG 213

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +        Q +  I  +          + ++      P K + +++ +R W  +
Sbjct: 214 VAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 268

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            V   L  +       +      +  + + ++ IA+ A     
Sbjct: 269 GVSVALRAVAEADAGVKGGGDDPEYALEKAVVIIARAARSRGR 311


>gi|319764763|ref|YP_004128700.1| DNA polymerase iii, delta subunit [Alicycliphilus denitrificans BC]
 gi|317119324|gb|ADV01813.1| DNA polymerase III, delta subunit [Alicycliphilus denitrificans BC]
          Length = 359

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +  L  E  +  +       +   S   +       + S       S SLF
Sbjct: 17  RSLYTLHGDEPLLQQEAQDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I  I I +    K     L++I  +   N   + I+    + K             
Sbjct: 75  ADKQILEIRIPSGKPGKDGASALQQIAAQADGNDSTLTIVLLPRLDKATRTGAWFSALEA 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190
               +   P  +  L   I + L    + ++         Q     + G+ +A+  E+QK
Sbjct: 135 HGATVQIDPVERAALPQWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        +  + V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPPGELAWEQVEAAVLNVARYDVFKLSEAVLCGQVARVQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277
                +  + L+++             
Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMA 280


>gi|298385657|ref|ZP_06995215.1| DNA polymerase III, delta subunit [Bacteroides sp. 1_1_14]
 gi|298261798|gb|EFI04664.1| DNA polymerase III, delta subunit [Bacteroides sp. 1_1_14]
          Length = 339

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADHITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQAVRNI-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGIDMEPKATAMLADFVGSDLSRLTGELEKLIITLPTG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+    ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLR--TTWQARD-YSIAMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  K   +   +I+ + +  I
Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337


>gi|295084203|emb|CBK65726.1| DNA polymerase III, delta subunit [Bacteroides xylanisolvens XB1A]
          Length = 339

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPVYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATFMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLTYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  +   +   +I+ + +  I
Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337


>gi|330826979|ref|YP_004390282.1| DNA polymerase III subunit delta [Alicycliphilus denitrificans
           K601]
 gi|329312351|gb|AEB86766.1| DNA polymerase III, delta subunit [Alicycliphilus denitrificans
           K601]
          Length = 359

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +  L  E  +  +       +   S   +       + S       S SLF
Sbjct: 17  RSLYTLHGDEPLLQQEAQDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I  I I +    K     L++I  +   N   + I+    + K             
Sbjct: 75  ADKQILEIRIPSGKPGKDGASALQQIAAQADGNDSTLTIVLLPRLDKATRTGAWFSALEA 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190
               +   P  +  L   I + L    + ++         Q     + G+ +A+  E+QK
Sbjct: 135 HGATVQIDPVERAALPQWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        +  + V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPPGELAWEQVEAAVLNVARYDVFKLSEAVLCGQVARVQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277
                +  + L+++             
Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMA 280


>gi|313792288|gb|EFS40389.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801763|gb|EFS42997.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL110PA2]
 gi|313838593|gb|EFS76307.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL086PA1]
 gi|314962947|gb|EFT07047.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078160|gb|EFT50211.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453000|gb|EGE99654.1| DNA polymerase III, delta subunit [Propionibacterium acnes
           HL092PA1]
          Length = 340

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 121/326 (37%), Gaps = 17/326 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
             +  G++  L+ +     +   +        LV L   E+  +   F  E    SLFS+
Sbjct: 27  ALLVQGAEA-LLSDRAVDARIKAARREFPDAELVELEGREV--DAGRFV-EATGGSLFSQ 82

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             I+++  +S  +K + D +            +I++    +K    L K+ +    ++  
Sbjct: 83  ATIVVVNAVSDLDKDLFDLVATTAANPPDTLCLILVHPGGVKGKGLLTKLTKAKVEIVK- 141

Query: 141 SCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               D      + D I      G   +  +A   L   LG D       + +L+S    +
Sbjct: 142 ---ADVPKPWAIPDFIVNEARRGHLDMDHDAVNALHQALGDDLRTLAAAVGQLASDS-PN 197

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +  + V         +    + +A+++G++ +A+    + L+  +   A+     +  
Sbjct: 198 GRVGAEEVTTYFGGRAEISSFNVSDASLEGRLPDALETLRWALSIGVQPAAVTAAMARGL 257

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + +  +++      +  +++ Q     + P K   L +  R W+K  V   + ++ +   
Sbjct: 258 RSV-GLYLDLRSQRMGDKQLAQTIG--VSPWKLKSLNKQARSWSKAGVARAI-RLVNTCD 313

Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344
            A K   ++ +   +++L     A +
Sbjct: 314 AAVKGAAVDPDYALESMLIAIDEARQ 339


>gi|289178531|gb|ADC85777.1| DNA polymerase III, delta subunit [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 359

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 16/305 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG D+ L  +        +   + D   L  ++A     N    ++E  S SL S++
Sbjct: 47  LLIYGGDEYLNEQNARDAVYRLLEEHRDA-ELARVDARSADANS---FDEAVSPSLLSQR 102

Query: 84  KIILIENL-STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            ++ +E+    +  +LD +     +   +     ++++     K  ++  +  +    + 
Sbjct: 103 SVVWVEHAEDADSGLLDAIVAYANETNRDPEASPVVMQCAATLKGRSVEALMRRNNIPVD 162

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D     ++ + +      + I  +A Q L+  LG         +++L  +  +D 
Sbjct: 163 TVPKLDKAKDKLNYVYQQFQSRGRRIDPQAAQQLVNVLGDHVGELAAMIRQLC-FDFDDD 221

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +    V   +     +    + +  + GK   A++     LA      AL+     + +
Sbjct: 222 PMRVNRVNQYLTGNPKVTGFNVADLAMGGKTARAVIALRSALAQGTEPIALIGALALQMR 281

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K   I++      +  + +         R      L  W    +   + ++      
Sbjct: 282 NLAKAAAIRQGDISKTKAAVNE------WALRTANGR-LGGWTSQGISACMQRLAWADEQ 334

Query: 320 ARKKK 324
            + + 
Sbjct: 335 CKSRG 339


>gi|319949559|ref|ZP_08023606.1| DNA polymerase III delta subunit [Dietzia cinnamea P4]
 gi|319436777|gb|EFV91850.1| DNA polymerase III delta subunit [Dietzia cinnamea P4]
          Length = 324

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 102/313 (32%), Gaps = 30/313 (9%)

Query: 25  IFYGSDKGLIFELINQ----FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G D+ L  E          +  +    DP  +  L   E+      F  E+ S SLF
Sbjct: 12  LVLGEDEFL-TERATTGVVSAVRAATPAGQDPPVVSRLGGPEVTA-PQLF--ELLSPSLF 67

Query: 81  SKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            + +I+++   +   K     + +         +++++     +   L     +  +   
Sbjct: 68  GEARIVVVTGAAELGKDAQAAVLDAARDLPPETVLVVQHTGGGRAKALVADLRRAGAEEH 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197
            +      + ++  +          ++ EA + L+  +G D       L++L+S C +  
Sbjct: 128 AAGKLTRHMDVVGFVRSEFRGLNVRVAPEACEALVEAVGTD-------LRQLASACGQLV 180

Query: 198 ---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +  + V+        +    +    + G +  AI   ++ L + +P   L    
Sbjct: 181 ADTGGKVDVEAVRRYHSGVVGVSGFTVAERAVTGDVAGAIEALEWALHTGVPEVVLADAL 240

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH--- 311
                 +  I ++     +   ++ ++         +  +    R W+   +   L    
Sbjct: 241 A---DAVNSIALVGTQRGVPPAELAKQGLPP--WKVKK-VTAQTRYWSIETLGSALQVVA 294

Query: 312 KIDHRIHLARKKK 324
           +++  +    +  
Sbjct: 295 RLNGEVKGRAENP 307


>gi|322379201|ref|ZP_08053592.1| DNA polymerase III [Helicobacter suis HS1]
 gi|322379727|ref|ZP_08054040.1| DNA polymerase III subunit delta [Helicobacter suis HS5]
 gi|321147876|gb|EFX42463.1| DNA polymerase III subunit delta [Helicobacter suis HS5]
 gi|321148341|gb|EFX42850.1| DNA polymerase III [Helicobacter suis HS1]
          Length = 324

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 107/321 (33%), Gaps = 40/321 (12%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M   E   ++Q             + YG  +  I    N+  K           +  +  
Sbjct: 1   MYQKELETYLQHKIP------RAVLLYGEWEFYIEYYANKIAK-----LTPQVQIYRVYF 49

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIK-- 117
            +           I+  SLF    ++ ++ +     K +  L + + K++ N +II    
Sbjct: 50  KDYCF--EEVLEYISQDSLFGGGSLVWLKLDKKLAAKEVRMLLDRLSKHLQNALIIEFYK 107

Query: 118 -------SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
                  + + K+     +       V+ +  +  +    + L++E       S+S EA 
Sbjct: 108 AKSQSEYAQDFKQFAA--QFKHPKLEVIEVRFFMPDLHARLALLQEKTRALNLSVSMEAL 165

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
            +LL     D      +L+KL+     D  I    V   +     + +EE++ A +  + 
Sbjct: 166 TLLLEVQNNDIRIIYQDLEKLALL---DKPIGLSDVHTHVYGVGGIQLEELL-AVLFKRS 221

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
              +      LA       L+ G  + F  L   +   +  + + ++I+           
Sbjct: 222 SKVLETFMRLLAEGFEEIELIRGLQRYFYQLFGFYAYMQKGSGNAKEIL-GYNPP----- 275

Query: 291 RNILQESLRIWNKNLVRETLH 311
              + ++L+       ++ ++
Sbjct: 276 -QAITQTLK----ERCKQVMN 291


>gi|238920812|ref|YP_002934327.1| DNA polymerase III subunit delta [Edwardsiella ictaluri 93-146]
 gi|238870381|gb|ACR70092.1| DNA polymerase III, delta subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 344

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 114/319 (35%), Gaps = 16/319 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I   +   +    L   +F+    G++  LI E ++  ++       D      L+ 
Sbjct: 1   MSRIYPEQLGAQLQDGLRACYFIL---GNEPLLIQESLDLIRQRARAHGFDEQFSATLDP 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                +    ++   S SLF+ ++I+ +   +      + + L ++      + +++++ 
Sbjct: 58  HT---DWDALFSRSQSMSLFASRQILTLTLPDNGVNAAMGERLSQLATLLHPDLLLLLRG 114

Query: 119 NEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
             + +        ++       +SC    +  L   +       Q  + + A Q+L    
Sbjct: 115 PRLTRTQENAAWYKQLSPQATLVSCQTPEQTQLPRWVANRARQMQLQLDEAALQLLCYCY 174

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G+ +A    L +LS     D  +T   V+  + D         ++A +  +   A  + 
Sbjct: 175 EGNLLALTQALGRLSL-LYPDGRLTLPRVEQAVNDAAHFSPFHWLDACLAARSKRAWHIL 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQE 296
           +           L+    +     E + +++     +   +    +K+ +   +R +L +
Sbjct: 234 NQLRQEGCEPIVLVRTVQR-----ELLLLLQLKGGAAQTPLRTLFDKHKVWQNRRPLLTQ 288

Query: 297 SLRIWNKNLVRETLHKIDH 315
           +++  +   + + +  +  
Sbjct: 289 AMQTLSLPQLHQAVALLSQ 307


>gi|260911394|ref|ZP_05917987.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634489|gb|EEX52586.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 342

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 98/258 (37%), Gaps = 10/258 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I  + N  ++ +       F+  +L  ++         +   +  + +
Sbjct: 24  PVYVLMGEESYYIDRIANLLEETVLQPQERDFNQDILFGVDTNG--VQVADLCKAYPMMA 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           ++++++++     K+  D L + +   +   ++++  K+  I +   L  +A      + 
Sbjct: 82  ERRLVMVKEAQNLKQ-TDALAKYLEHPVETTVLVLCHKNGTIDRRKKL--LARAEAIGVV 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198
                     L   I+  L   + ++  +A  ++  ++G D     +EL K L S    D
Sbjct: 139 FESKKKRDYELPAFIKGYLSTKKATVEDKAAIMIAEHIGSDLNRLTSELDKVLISLPEND 198

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
           + IT   V+  I  +      E+ NA +   ++ A  +  +F  +       A L     
Sbjct: 199 LRITPDIVERQIGVSKEFNGFELRNAIVNRDVFKANQIIQYFDKNPKAGSIFAFLPLLFS 258

Query: 257 KFQLLEKIHIIKECSNIS 274
            FQ L   +     +N +
Sbjct: 259 FFQNLLIAYYAPNKNNEA 276


>gi|254253253|ref|ZP_04946571.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895862|gb|EAY69742.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 364

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 113/296 (38%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRTAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKALAAAGNPDALLLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIKRGA-AAGKPLATLLRENR--VWGPRERLIAPALNRVSEAVLEKAL 307


>gi|291543002|emb|CBL16112.1| DNA polymerase III, delta subunit [Ruminococcus bromii L2-63]
          Length = 347

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 130/340 (38%), Gaps = 31/340 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ YGS++  +     +  + ++      F+    +      +       +      +
Sbjct: 20  PVYLIYGSEQMFVKSYTKKLCEAVAGKNPSDFNYHTFSGD---IDFQELAASLQIMPFMA 76

Query: 82  KKKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFT 135
           ++  +++ ++  +   K  LD L+E+  +     ++II        K   +   + ++  
Sbjct: 77  ERNCVVVTDIYFDNMVKDRLDTLKELTSRAWDGTVLIISMPTYVPSKNKTSFTALIKRVE 136

Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + ++ C+   N   +   + +      K IS      +++N+G D    +NE+ K+++Y
Sbjct: 137 KIGSVCCFEKINSQIIEKYVAKWANENGKLISHLNASKIISNVGDDLNLLKNEVNKIAAY 196

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              +  IT++ +  +          ++ +  I G+   A    D     +     +L+  
Sbjct: 197 AKGE-EITDRDIDLLSTVNLEARTYDMADDVINGRGDRAFRKLDTLFCQREEPINILYAL 255

Query: 255 LQKFQLLEKIHIIKECS-----------NISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
              +    ++ +  ECS             +   ++ +   ++   + +   E+LR  + 
Sbjct: 256 SSAYVDAYRMRVADECSVSKETVAKDFAYKNRAFVLNRARTSV--SRTS--TEALRK-SL 310

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           +++ ET  K+       R   +L + +I + +L IA+   
Sbjct: 311 DVLVETDEKLKSVSVNQR---FLIEQLISRLLL-IAKEGR 346


>gi|33593065|ref|NP_880709.1| DNA polymerase III subunit delta [Bordetella pertussis Tohama I]
 gi|33563440|emb|CAE42321.1| putative DNA polymerase III, delta subunit [Bordetella pertussis
           Tohama I]
 gi|332382477|gb|AEE67324.1| DNA polymerase III subunit delta [Bordetella pertussis CS]
          Length = 351

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 101/286 (35%), Gaps = 14/286 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +  L+ E  +  +       +   + +V++A   + + S       S SLF 
Sbjct: 23  PLYTVSGDEPLLVTEAADAIRAAARAAGYTDRTSMVMDA---RSDWSAVAAATQSVSLFG 79

Query: 82  KKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
            ++++ ++        S  + +    ++   +   + ++++    + K     K A+   
Sbjct: 80  DRRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALA 139

Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
               ++   +  +  L   I   L    +       Q +   + G+ +A+  E+QKL   
Sbjct: 140 RGGVMADIANVERGRLPAWIGMRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGL- 198

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              +  +  + V+  + +     +  + +A + G     + + D   A       +L   
Sbjct: 199 LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAV 258

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            ++ +LL ++             ++++    I      +  ++L  
Sbjct: 259 GEEIRLLARV-AQARQQGQDAGALMRRLR--IFGAHERLALQALGR 301


>gi|121606657|ref|YP_983986.1| DNA polymerase III subunit delta [Polaromonas naphthalenivorans
           CJ2]
 gi|120595626|gb|ABM39065.1| DNA polymerase III, delta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 367

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 95/267 (35%), Gaps = 14/267 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L+ E  +  +       +   ++  +       + S       S SLF+ 
Sbjct: 19  LYTLHGDEPLLVQEFADALRAAARQRGYTERTVHTVAGAHF--DWSEVLASGGSLSLFAD 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           K+I+ +   +    K     L+++  +   +   + ++    +    T         +  
Sbjct: 77  KQIVEVRIPSGKPGKDGSVALQQLAERAQGDDSTLTLVMLPRLDGATTKGAWFGALESFG 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLS 192
           + +   P ++  L   I + L +  + ++     +   Q     + G+ +A+  E+QKL+
Sbjct: 137 VTVKFEPIDRRTLPQWIAQRLQLQGQRVANGEEGQRTLQFFADRVEGNLLAAHQEIQKLA 196

Query: 193 -SY-CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             Y    D +++   V++ + +     + ++  A + G    A  + D   +       +
Sbjct: 197 LLYPVTGDGILSFDQVENAVLNVARYDVFKLSEAVLGGHAIRAARMIDGLQSEGESEVLV 256

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEK 277
                +  + ++++    +        
Sbjct: 257 HWALAEDIRSMKRVRDAIQAGRPMPMA 283


>gi|194098007|ref|YP_002001055.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae NCCP11945]
 gi|239998471|ref|ZP_04718395.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02]
 gi|240013596|ref|ZP_04720509.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI18]
 gi|240080177|ref|ZP_04724720.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19]
 gi|240115131|ref|ZP_04729193.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18]
 gi|240117414|ref|ZP_04731476.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1]
 gi|240120666|ref|ZP_04733628.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID24-1]
 gi|240125222|ref|ZP_04738108.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679]
 gi|260441052|ref|ZP_05794868.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2]
 gi|268594331|ref|ZP_06128498.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02]
 gi|268596326|ref|ZP_06130493.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19]
 gi|268600804|ref|ZP_06134971.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18]
 gi|268603109|ref|ZP_06137276.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1]
 gi|268683818|ref|ZP_06150680.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679]
 gi|291044385|ref|ZP_06570094.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2]
 gi|193933297|gb|ACF29121.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae NCCP11945]
 gi|268547720|gb|EEZ43138.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 35/02]
 gi|268550114|gb|EEZ45133.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA19]
 gi|268584935|gb|EEZ49611.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID18]
 gi|268587240|gb|EEZ51916.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID1]
 gi|268624102|gb|EEZ56502.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-92-679]
 gi|291011279|gb|EFE03275.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae DGI2]
 gi|317163752|gb|ADV07293.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 332

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 87/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +        +A     + +       S  LF+
Sbjct: 16  PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGSAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
             +     +  + +       ++  A ++G +     L D               +A  +
Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272


>gi|293371581|ref|ZP_06617996.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CMC 3f]
 gi|292633444|gb|EFF52012.1| DNA polymerase III, delta subunit [Bacteroides ovatus SD CMC 3f]
          Length = 339

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              IT + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRITPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  +   +   +I+ + +  I
Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337


>gi|260175030|ref|ZP_05761442.1| hypothetical protein BacD2_24451 [Bacteroides sp. D2]
 gi|299145627|ref|ZP_07038695.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_23]
 gi|315923261|ref|ZP_07919501.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|298516118|gb|EFI39999.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_23]
 gi|313697136|gb|EFS33971.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 339

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 114/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLSETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQAVRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEVDKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPGFIASYMKRKGVDMEPKATVMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+ +  ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  +   +   +I+ + +  I
Sbjct: 313 DAKSKGVQNSSMTDGDILRELVFKI 337


>gi|42526243|ref|NP_971341.1| hypothetical protein TDE0729 [Treponema denticola ATCC 35405]
 gi|41816355|gb|AAS11222.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 338

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 128/340 (37%), Gaps = 23/340 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +++ V++F G + G     ++   K +S  Y D  +  V        ++ +        S
Sbjct: 1   MANPVWLFMGPEIGERNTAVDTVLKTLSKQYGDIETHTVYAGDAGMGDVISLLQNA---S 57

Query: 79  LFSKKKIILIENLSTEKKV--LDCLEEII-----IKNICNHIIIIKSNEIKKNNTLRKIA 131
           LFS  K+I++++    KK   +D L + I      +N  +  +I+ S+E    +  +KI+
Sbjct: 58  LFSSAKLIILKSAELIKKKEDIDLLTDWIQSVSKKENTSDSFLILISDE---TSIAKKIS 114

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +          +   +    + +   L      I  EA   LL  +  +  A +     L
Sbjct: 115 DTVPKTQQKIFWELFENKKQEWVRSFLFREGIEIEDEAVDELLELVENNTDALKMACSHL 174

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---- 247
             Y  +   I +++++ +           + NA   G +  A+ ++   + SK  S    
Sbjct: 175 VLYFQKGSHIDQENIEKLFAHNKEETPFSLFNALTMGSLETALSISQKIILSKNSSPVQI 234

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A L    ++ Q   KIH   E  +    K      K  +   +     + ++WN+    
Sbjct: 235 IAGLSYCFRRLQDWHKIHRDNEYLDDFALKRFGFLGKTALAQYK----RAAKLWNEVQCV 290

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
           + +  +       R      +NI+    LY  + ACK+ N
Sbjct: 291 KIIALLSETDLELRSLGTSLQNIVMDMCLY--EIACKSGN 328


>gi|295394826|ref|ZP_06805041.1| DNA-directed DNA polymerase III delta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972422|gb|EFG48282.1| DNA-directed DNA polymerase III delta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 325

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 113/325 (34%), Gaps = 22/325 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  GS+  L+ + + +    +          V L+A   +    +      + SLFS
Sbjct: 16  PLAVVSGSEAVLVRKTLERISAKVDSDVER----VRLDASHYE--PGSLLQACMA-SLFS 68

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--AEKFTSV 137
            +K +++++L +  +  + D L  +   N    ++ +      +   L K   A+   + 
Sbjct: 69  AQKYVVVDSLESMSDDFLADALSYVGDANPDAVVVFLHGGG-NRGAKLLKALAAQGAPTY 127

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            A     D +    D          +SI  +A   L++ L  D       +++L      
Sbjct: 128 DATPLKTDAQKS--DFATGEFKRAGRSIEPDAFASLMSALSADVSELAAGIEQLL--SDT 183

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I    V+            ++ +A I GK   A+ L    L +      L+     K
Sbjct: 184 QGTIDRATVEKYYAGRIEASGFKVADAAIAGKRAEALSLLRHALETGTDPVPLVATIAMK 243

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + L K+  ++  +     ++         P + +  +  LR W+   + + +       
Sbjct: 244 LRQLAKVGGMRGSAGQLAGELKMA------PWQIDKARRELRYWSPEALGDAIMLTAWAD 297

Query: 318 HLARKKKYLEKNIIFQTILYIAQTA 342
           H  +      +  + + IL +A+ A
Sbjct: 298 HAVKGGGRDPEYAVERLILGVAEYA 322


>gi|289422291|ref|ZP_06424142.1| DNA polymerase III, delta subunit [Peptostreptococcus anaerobius
           653-L]
 gi|289157296|gb|EFD05910.1| DNA polymerase III, delta subunit [Peptostreptococcus anaerobius
           653-L]
          Length = 343

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 120/319 (37%), Gaps = 26/319 (8%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  + IQ+  KN      +++ YG +  LI EL ++FK   +    D F+ V+++  E 
Sbjct: 1   MKREELIQQLDKNDLD--KIYVLYGKEIYLIKELEDKFKALANPATLD-FNQVIIDGKET 57

Query: 64  QKNISTFWNEINSTSLFSKKKIILIEN----LSTEKKVLD----CLEEIIIKNICNHIII 115
             NI    + + +     +++ I+I++       +K   D     L EI+       +I+
Sbjct: 58  --NIDMIQSAVETLPFMDERRYIIIKDFELFKGRKKNFNDNDEKKLLEILESAPETSLIV 115

Query: 116 I-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
             +  E+    +  K   KF +++ +    D  + L++   +     + +I       ++
Sbjct: 116 FAQYEEVDTRRSFFKKLGKFANMVELKKLED--VQLLNWSRQIFNKYRVNIENSVIAYMV 173

Query: 175 ANLG-----GDRIA--SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
              G      D       NE++KL  +  +   + +  +  ++ D     + + +     
Sbjct: 174 ETSGYSDKKSDMNLMDLENEIKKLCVFVGDAGRVDKSIIDQMMKDKVENDVFKFLYYMSS 233

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
                ++ L +  + S      ++    ++   + +I    +   + +  I         
Sbjct: 234 KNSKMSVKLLEDMIDSGESGLGIIFLITRQVYNIIQIK-RMQKERMPYNIIRDNMGMPSF 292

Query: 288 PMKRNILQESLRIWNKNLV 306
            + +  L      +++ ++
Sbjct: 293 VVNK--LSRQANNFSEEIL 309


>gi|33862347|ref|NP_893907.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9313]
 gi|33640460|emb|CAE20249.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 336

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 32/333 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       I     ++        +L  L+  +  +       E  +    S
Sbjct: 2   PIHLIWGDDAAARDHAIETLIGDVVDQAWSSINLSRLDGADAGQASQALA-EARTPPFGS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIII-----------KSNEIKKNNT 126
             +++L++      +   ++ +  E+++        +++            +  ++K   
Sbjct: 61  GGRLVLLQRSPFCNACPSELANRFEDVLDLIPETSHLVLCNPNKPDGRLRTTKALQKLVK 120

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L++ +EK   + AI     +     +L+E +       +  EA   L+  +G D      
Sbjct: 121 LKQASEKSFLLPAIW----DGAGQQELVERTARDLGLQLEPEATAALVEAIGNDSTRLTA 176

Query: 187 ELQKLSSYC----------LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           ELQKL+ +               LI  ++V  +I       ++ + ++ + G    AI  
Sbjct: 177 ELQKLALHADIRQESATENQSPTLIKAENVAALIEGMATNALQ-VGDSLLAGHAGEAIAR 235

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            D  L +  P+  ++     + +    + ++++        I +       P +  ++++
Sbjct: 236 LDALLDAGEPALRIVATLTGQIRGWLWVSLLEQQGERDVNVIAKAAGIG-NPKRIYVMRK 294

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329
            L+          L ++       ++       
Sbjct: 295 QLQGRPPQRFLTLLSRLLEVEAALKRGAIPTDA 327


>gi|255325517|ref|ZP_05366619.1| DNA polymerase III, delta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297455|gb|EET76770.1| DNA polymerase III, delta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 325

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 112/339 (33%), Gaps = 36/339 (10%)

Query: 22  FVFIFYGSDKGLIFELIN-----QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
            V +  G D+ L  E           +        P  L  L A E+ +       E  S
Sbjct: 6   PVHLILGDDEFL-TERARLQIQRAAAEESGSNGTRP-ELTKLKASEVSEGE---LLEATS 60

Query: 77  TSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN------- 124
            SLF   ++I+I +     K+V+D L            ++I     +  +KK        
Sbjct: 61  PSLFGDNRVIVISDCERAGKEVVDILLRACANPAPGMTMVIIYSVTAKTLKKKKKQPELV 120

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LRKIAE        S YP+    L               + +    +L  +G D    
Sbjct: 121 AKLRKIAEVHE---VFSLYPNE---LGQWATREFSSHGVRPTPDVIHAVLEGVGSDLREL 174

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L S    +  +T + V++       +   +I +A + G++  A+      L   
Sbjct: 175 ASAISQLVSDTGGN--VTREAVQNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLG 232

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
               A+      K   + +++  +        +        ++ M + +     R W+ +
Sbjct: 233 ASPVAIAAALANKVGAVARLYSARGDQYSLASQT--GLAPYVVKMTQPVA----RRWSAD 286

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
            V + +  +       + +    +  +   +  +A+ A 
Sbjct: 287 NVTKAVILVSELDAAVKGQGGEPEFALEAAVKRVAELAR 325


>gi|15603081|ref|NP_246153.1| DNA polymerase III subunit delta [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721570|gb|AAK03300.1| HolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 116/310 (37%), Gaps = 14/310 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F G D  L+ E  ++  +       D  +++ ++      N S  +    S  LF 
Sbjct: 19  KLYYFVGQDPLLLSENQDRINQYAFKQGFDEKNVITIDQ---NTNWSDLFERCQSIGLFF 75

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +         +   L+E+I     + ++I++  ++ K    +       +    
Sbjct: 76  NKQILFLNLPENLSASLQTRLQELISLLNDDILLILQLPKLNKATEKQTWFIQANQYEPE 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + + C       L   I          I ++A Q+L  +   + +A +  LQ L+    
Sbjct: 136 AVLVHCQTPTIEQLPRWIALRAKSMGLQIEEQAIQLLCYSHENNLLALKQSLQLLAL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+   V+  I  T V    + ++A ++GK   A  + +   A +M    LL    +
Sbjct: 195 PDNKISYARVQSTIAQTSVFTPFQWLDALLEGKSKRAQRILEGLKAEEMEPIILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
               L  +    H +   + +   ++ ++ ++  +   +R    ++ +  N   +   + 
Sbjct: 255 DLLTLLGLAKPSHPVTLTTPLPAHQLREQFDQLKVWQNRRPFFTQAFKRLNYKQLYLIIQ 314

Query: 312 KIDHRIHLAR 321
            +     LA+
Sbjct: 315 ALAEIERLAK 324


>gi|50086112|ref|YP_047622.1| DNA polymerase III subunit delta [Acinetobacter sp. ADP1]
 gi|49532088|emb|CAG69800.1| putative DNA polymerase III, delta subunit (probably ATP hydrolase)
           (HolA) [Acinetobacter sp. ADP1]
          Length = 331

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 139/331 (41%), Gaps = 32/331 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
           K +  +   +I +G +  L   L++ F+K+              +   +  +    +N +
Sbjct: 10  KRVDAARGAWIIHGQEPLLEQNLLDAFRKSWQTQ---EIERQRYDIGSV-SDWKNVFNGL 65

Query: 75  NSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRK 129
           NS SLFS++  I +  N+  +   +  L+  +  N  N ++++     ++ +K  ++  +
Sbjct: 66  NSLSLFSQQLAIEVHGNIKPDASGIKQLKSYLQHNEHNLLLVVLPKQDASSLK--SSFFQ 123

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
             E    +  + + YP ++     ++ +        + ++A   L+ +   + +A++N L
Sbjct: 124 TVEANGVIAHLSAQYPQDRQ---RILAQEAEKIGIQLDQDAWTWLMQHHEHNLLAAKNSL 180

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            ++S    E  LI  + +   + D       ++ +A ++G +  ++ +  + + +  P  
Sbjct: 181 MRVSDTFPEHQLIQIEQLYACLQDQSRYTTYDLSDAMLRGNLAQSVKIFQYLIGAGEPHS 240

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR- 307
            +L    ++ +LL ++          FE+     +  I   K +  Q++LR  N +    
Sbjct: 241 LILWTLSKEMRLLMQL----------FEQPQNALQLGIWKTKVSDYQQALRRLNPHHFLS 290

Query: 308 --ETLHKIDHRIH-LARKKKYLEKNIIFQTI 335
               L +ID  I  ++ +     +++I Q +
Sbjct: 291 WPTLLLRIDSAIKGMSDENP---EHLILQAL 318


>gi|29346299|ref|NP_809802.1| hypothetical protein BT_0889 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568281|ref|ZP_04845692.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338194|gb|AAO75996.1| DNA polymerase III-like, delta subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842354|gb|EES70434.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 339

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 114/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEESYYIDLIADYITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   + +
Sbjct: 79  SEHQVVVVKEAQAVRNI-EELSYYLQKPLHSTILVICHKHGTLDRRKKL--AAEVEKTGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-E 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKDAQLPAFIASYMKRKGIDMEPKATAMLADFVGSDLSRLTGELEKLIITLPTG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QKRVTPEQIEKNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     +       +      +           R+    ++R ++     + + +I + 
Sbjct: 256 SFYSNLMLAYYAPDKSEQGIANMLGLR--TTWQARD-YAIAMRKYSGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  K   +   +I+ + +  I
Sbjct: 313 DAKSKGVKNSSMSDGDILRELVFKI 337


>gi|33596361|ref|NP_884004.1| DNA polymerase III subunit delta [Bordetella parapertussis 12822]
 gi|33602353|ref|NP_889913.1| DNA polymerase III subunit delta [Bordetella bronchiseptica RB50]
 gi|33566130|emb|CAE37030.1| putative DNA polymerase III, delta subunit [Bordetella
           parapertussis]
 gi|33576792|emb|CAE33871.1| putative DNA polymerase III, delta subunit [Bordetella
           bronchiseptica RB50]
          Length = 351

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 101/286 (35%), Gaps = 14/286 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +  L+ E  +  +       +   + +V++A   + + S       S SLF 
Sbjct: 23  PLYTVSGDEPLLVTEAADAIRAAARAAGYTERTSMVMDA---RSDWSAVAAATQSVSLFG 79

Query: 82  KKKIILIE------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
            ++++ ++        S  + +    ++   +   + ++++    + K     K A+   
Sbjct: 80  DRRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALA 139

Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
               ++   +  +  L   I   L    +       Q +   + G+ +A+  E+QKL   
Sbjct: 140 RGGVMADIANVERGRLPAWIGMRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGL- 198

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              +  +  + V+  + +     +  + +A + G     + + D   A       +L   
Sbjct: 199 LYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAV 258

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
            ++ +LL ++             ++++    I      +  ++L  
Sbjct: 259 GEEIRLLARV-AQARQQGQDAGALMRRLR--IFGAHERLALQALGR 301


>gi|284036851|ref|YP_003386781.1| DNA polymerase III subunit delta [Spirosoma linguale DSM 74]
 gi|283816144|gb|ADB37982.1| DNA polymerase III, delta subunit [Spirosoma linguale DSM 74]
          Length = 344

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 115/333 (34%), Gaps = 25/333 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++ +G +   +  +  + +K         F+  VL   E   +     N        +
Sbjct: 19  PVYLIHGDEPYYLDRIAEELEKVAVPVAERGFNQFVLFGKET--DAGAVLNYARRYPFMA 76

Query: 82  KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIII----KSN--EIKKNNTLRKI 130
           +++++L++     N   +K      E+  +  + + I+++    +     + +     K 
Sbjct: 77  ERQLVLVKEAQQLNGINDKSTQTLFEDYALNPLPSTILMLCYVKEDGKPGLDERKAWVKA 136

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                 +L +    DN   + D + E        +S +A Q+L  ++G D      E+ K
Sbjct: 137 FGAKGKLLGVKKLYDN--KIPDWVGEYCREQGAKVSPKACQLLADHIGNDLKRLAGEIDK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSH 248
           +         I+   V+ ++  +    + E+  A +Q  +  A  + D+F  +    P  
Sbjct: 195 ILINLHVGEEISAATVERLVGISKEYNVFELQKALVQRDVVKANQIVDYFGRNPKDNPLV 254

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L      F  +  +   K+ ++     ++                 + R +    V  
Sbjct: 255 VILAQLFGYFSKVILVQASKDQTDKGLAPLLG--VNPFFVKD---YLSAARTFPLPKVAA 309

Query: 309 TLHKIDHRIHLAR--KKKYLEKN-IIFQTILYI 338
            +  I      ++      + ++ I+ + +  +
Sbjct: 310 IISAIRRADARSKGIDSPTMNESDILRELVFEV 342


>gi|204930508|ref|ZP_03221438.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320442|gb|EDZ05645.1| DNA polymerase III, delta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 343

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 94/266 (35%), Gaps = 20/266 (7%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +  + ++   + SLF+ ++  ++ +        + + L  +      + +       I +
Sbjct: 60  DWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSELLHDDLL------LILR 113

Query: 124 NNTLRKIAEKFTSVLAIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            N L K  E     +A++       C    +  L   +          +   A Q+L   
Sbjct: 114 GNKLTKAQENAAWYIALADRSVQVSCQTPEQAQLPRWVAARAKAQNLQLDDAANQLLCYC 173

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             G+ +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +
Sbjct: 174 YEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                        LL    ++  LL  +   ++ ++     +  K    +   +R ++ +
Sbjct: 233 LQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGD 288

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARK 322
           +L+  +   +R+ +  +       ++
Sbjct: 289 ALQRLHPAQLRQAVQLLTRTEITLKQ 314


>gi|187925351|ref|YP_001896993.1| DNA polymerase III subunit delta [Burkholderia phytofirmans PsJN]
 gi|187716545|gb|ACD17769.1| DNA polymerase III, delta subunit [Burkholderia phytofirmans PsJN]
          Length = 372

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 105/289 (36%), Gaps = 21/289 (7%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +++ YG +  L  E    I    +    T    F++          + S+      S SL
Sbjct: 19  LYVVYGDEHLLAQEACDRIRATARAAGFTDRSVFTVER------GFDWSSLLGASQSMSL 72

Query: 80  FSKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           F  ++++   I +    K+  D L+ +      + + +I    +             +  
Sbjct: 73  FGDRQLVELRIPSGKPGKEGADALKALAAAVNDDVLTMITLPRLDVATQKSAWFTALSDA 132

Query: 138 -LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKL 191
            +A+   P  +  L + + + L    + ++     + A   +   + G+ +A+  E+QKL
Sbjct: 133 GVALKIDPVERAQLPNWVGQRLAAQGQRVAAGEEGRRALAFIAERVEGNLLAAHQEIQKL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                    ++ + V+D + +     + ++  A + G +     + D        +  +L
Sbjct: 193 GL-LYPAGSLSFEQVQDAVLNVARYDVFKLNEAMLAGDVGRLSRMLDGLRGEGEAAVLVL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
              +++ + L +I      +  +   ++++    +   +  ++  +L  
Sbjct: 252 WAVVEEVRTLLRIKRGV-AAGKALAMLVRENR--VWGPRERLIGPALSR 297


>gi|329954858|ref|ZP_08295875.1| DNA polymerase III, delta subunit [Bacteroides clarus YIT 12056]
 gi|328526962|gb|EGF53973.1| DNA polymerase III, delta subunit [Bacteroides clarus YIT 12056]
          Length = 339

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPIYYLMGEEPYYIDLISDYITDNVLNETEKEFNLTVVYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   S +
Sbjct: 79  SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGVLDRRKKL--AAEIEKSGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                      L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKVKDAQLPAFITSYMKRKGVDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              IT + ++  I  +      E+ +A ++  +  A  +  +F  +    P    L    
Sbjct: 196 QTRITPEQIEHNIGISKDYNNFELRSAIVEKDVLKANRIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E S       +           R  L  ++R +N     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKSEQGIAAFLGLKSP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEK-NIIFQTILYI 338
               ++      L    ++ + +  I
Sbjct: 312 ADAKSKGVGNSSLNDGALLRELVFKI 337


>gi|148828100|ref|YP_001292853.1| DNA polymerase III subunit delta [Haemophilus influenzae PittGG]
 gi|148719342|gb|ABR00470.1| DNA polymerase III subunit delta [Haemophilus influenzae PittGG]
          Length = 344

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLTKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   LA+++
Sbjct: 315 ELANIERLAKQE 326


>gi|325970607|ref|YP_004246798.1| DNA polymerase III subunit delta [Spirochaeta sp. Buddy]
 gi|324025845|gb|ADY12604.1| DNA polymerase III, delta subunit [Spirochaeta sp. Buddy]
          Length = 343

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 117/341 (34%), Gaps = 23/341 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S   ++  G + G   + +   +  +   Y +   L      E +      +  +N+ S
Sbjct: 1   MSERAYLLLGPEAGAKEQELKDIRTRLRTEYGNEIELSRFYPFETEN--GEIFTVLNNNS 58

Query: 79  LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LFS  +++++    S    ++  L + +   +    ++I S+E+  +  + K+  K  + 
Sbjct: 59  LFSDYRLVMLSQADSMSSSLVQALADYLAHPVDTATLVILSSELSVSQKIMKLVPKQNTK 118

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY--C 195
           +    Y   +    D I         SI+ +A  +L+     +    R    +L  +   
Sbjct: 119 I---FYDLLETQKADWIRNHFRRMGLSITADAVDLLMDMTEDNTQELRTICNQLGLFWQI 175

Query: 196 LEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252
            E    I+++ V+  I  +       +     +  +  ++      L S        L+ 
Sbjct: 176 GEKGRPISDEDVQTYIHHSRQEDAFTLFPLIARCDLKQSLKSLSAMLGSGDSQTPILLVS 235

Query: 253 GFLQKFQLLEKIHII--------KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           G L +F+ L  I           +  S  + +  +    K      R    ++   ++  
Sbjct: 236 GLLWQFRRLLSIAEELSLGSSESEAFSKANVQGKVSAIRKP---KDRTTYHDATLAYDLA 292

Query: 305 LVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACK 344
            +R  +  +       ++    L   ++ + +  I +   K
Sbjct: 293 SIRLIITALAEADIQVKEASSELTPLVLERLLYRIIKGKGK 333


>gi|297160558|gb|ADI10270.1| DNA polymerase III, delta subunit [Streptomyces bingchenggensis
           BCW-1]
          Length = 328

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 96/282 (34%), Gaps = 10/282 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ N        +  ++  +        ++++ +   K  
Sbjct: 55  PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKGYLSAPAEEITLVLLHAGGAKGK 113

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRAEFRATGRSATPEACQALVDAIGSDLREL 172

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            +   +L      +  I E  V              + +  ++G+   A+    + +A+ 
Sbjct: 173 ASACAQLV--ADVEGTIDEAVVARYYTGRAEASSFTVADRAVEGRTAEALEALRWAVATG 230

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+             + ++      P K + +++ +R W+ +
Sbjct: 231 VAPVLITSALAQGVRAIGKL--ASAPRGARPGDLARELGMP--PWKIDRVRQQMRGWSAD 286

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            V   L  +       +      +  + + ++ +A+ A    
Sbjct: 287 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVTVARAARAGR 328


>gi|241767228|ref|ZP_04764972.1| DNA polymerase III, delta subunit [Acidovorax delafieldii 2AN]
 gi|241362116|gb|EER58220.1| DNA polymerase III, delta subunit [Acidovorax delafieldii 2AN]
          Length = 351

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 95/299 (31%), Gaps = 16/299 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ +G +  L  E  +  +       +   S   +       + S       S SLF+ 
Sbjct: 19  LYVLHGDEPLLQQEAADAIRATARAQGYTERSSYTVAGAHF--DWSAVLAAGGSLSLFAD 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           K+I+ I   +    K     L+++      N   + ++    + K             + 
Sbjct: 77  KQIVEIRIPSGKPGKDGSVALQQVAESAKGNDSTLTLVMLPRLDKATKTGAWFAALEANG 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKLS 192
             I   P  +  L   I + L    + +      +   Q     + G+ +A+  E+QKL+
Sbjct: 137 TTIQIDPIERAQLPQWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQKLA 196

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                   +T+  V+  + +     + ++  + + G+      + D   A       +  
Sbjct: 197 L-LHPAGELTQAQVEAAVLNVARYDVFKLSESVLAGQTARVQRMLDGLQAEGEAEVLVHW 255

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              +  + L+++             + +     I   K  + +  L   +   +   L 
Sbjct: 256 ALAEDIRALKRVKDAMNAGRPLPMALRENR---IWGPKERLFERILPKASDAALARLLQ 311


>gi|237785925|ref|YP_002906630.1| DNA polymerase III subunit delta [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758837|gb|ACR18087.1| DNA polymerase III delta subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 350

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 105/319 (32%), Gaps = 25/319 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT--YHDPFSLVVL 58
           MA     +      +       V I  G++  L     +   K +       D  ++  +
Sbjct: 15  MAPSRRSRTTFDPAEGSGAPAPVHIIVGTEDFLADRHRHAIVKRVRENSPTGDELTVTTV 74

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN--HIIII 116
            A +I     T   E+ S SLF + +I++I N++   K    L     K+      +II 
Sbjct: 75  RAGDITAPELT---ELLSPSLFGEDRIVVITNMNDAGKEPASLVLAAAKDPAPGITLIIQ 131

Query: 117 KSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
            S E +     + L K+ E+     AI         L   ++      +  +S +    L
Sbjct: 132 HSGEGRTKAMLSKLLKLGEEHR-ADAIP-----VRELPTFVQSEFRRFRVRVSPDVVSAL 185

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           + ++G +     + + +L      D  +  + V+     T  +    I +  I G +  +
Sbjct: 186 IESVGSNVRELASAVSQLV--ADNDGNVDLEAVRRYYTGTAEVSSFSIADDVIAGNVDQS 243

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRN 292
           +      L   +   A+     +    + ++        I   +   +         +  
Sbjct: 244 VAKVRRALQLGVAHMAISTAVCRGISEVARL---SGNRRIDPYRDASRLGMPPWKLKRTA 300

Query: 293 ILQESLRIWNKNLVRETLH 311
            + +    W++  + E + 
Sbjct: 301 PIAQ---RWSQAAIAEAVQ 316


>gi|301310207|ref|ZP_07216146.1| DNA polymerase III, delta subunit [Bacteroides sp. 20_3]
 gi|300831781|gb|EFK62412.1| DNA polymerase III, delta subunit [Bacteroides sp. 20_3]
          Length = 340

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I ++ +   K++       F+ ++L   +   +  +  N      + S
Sbjct: 22  PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           + ++I++      + + + L   +   + + I++I      + +   L    +K      
Sbjct: 80  EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   +      I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193

Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + ++  I  +      E+I A     I  A  +A +F  +    P    L 
Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECS 271
                F  L   +  K+ S
Sbjct: 254 VLFNYFSNLLICYYSKDRS 272


>gi|227548753|ref|ZP_03978802.1| DNA polymerase III, delta subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079165|gb|EEI17128.1| DNA polymerase III, delta subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 314

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 110/324 (33%), Gaps = 16/324 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + V +  G D+ L  E   +   + +     P  +  L A ++ +          S SLF
Sbjct: 6   NPVHLVLGEDEFL-AERATKTIIDAAADGAAP-EVSRLRAGDVTEAELLM---ATSPSLF 60

Query: 81  SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++++++        K+  + L +          +II+     +N +     +K   V  
Sbjct: 61  AEQRVVVFTGAEQAGKEPTELLLQAARDPAPGMTLIIEHTGGGRNKSYVAKFKKVAEVHT 120

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +    D        +           + +    LL ++G D         +L      + 
Sbjct: 121 VDPLRD--RDRHAWLNNEFRRLGAHPTPDVVAALLESVGSDLRELATAASQLV--ADTEG 176

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T + V         +   +I +  + G+   A+      L   +   AL     +K  
Sbjct: 177 ELTVRSVHAYYSGVAEISGFDIADLAVAGRAERALASTRRALQLGISPVALAAALARKVS 236

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            + K++     +  + ++I ++   +    K+ +  ++ R W+   V E +  I +    
Sbjct: 237 DIAKLY----STRGNPDQIARELGMHPFVAKKTM--QAARTWSGEAVSEAVIVIANLDAE 290

Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343
            + +       I   +  IA+ A 
Sbjct: 291 VKGQGGDPDYAIEHAVRRIAELAR 314


>gi|303233662|ref|ZP_07320316.1| DNA polymerase III, delta subunit [Finegoldia magna BVS033A4]
 gi|302495096|gb|EFL54848.1| DNA polymerase III, delta subunit [Finegoldia magna BVS033A4]
          Length = 332

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            ++   N  LS+ + + +G +K  I + ++  K++ +    D + L          +   
Sbjct: 6   AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55

Query: 70  FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121
            ++   +  +FS K++ILI         +S  K  +D L   I       +III S   +
Sbjct: 56  IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK-----SISKEAKQILLAN 176
            K+  L+   E       I     N+      I   L   +      +I  E    L+ N
Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                I   NEL K  +  LE   ITEQ +  +I + +   I ++ ++  Q  +   I  
Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            D  +     S   LH  ++ F+ L  +  +     +S  +I +K +  I   + N +Q 
Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISSYELNKIQN 286

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323
            ++IW  + +R  +HK+       +  
Sbjct: 287 FVKIWRYDQLRFAIHKMYEIEITLKSN 313


>gi|150007757|ref|YP_001302500.1| hypothetical protein BDI_1115 [Parabacteroides distasonis ATCC
           8503]
 gi|256840023|ref|ZP_05545532.1| DNA polymerase III, delta subunit [Parabacteroides sp. D13]
 gi|298375702|ref|ZP_06985659.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_19]
 gi|149936181|gb|ABR42878.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256738953|gb|EEU52278.1| DNA polymerase III, delta subunit [Parabacteroides sp. D13]
 gi|298268202|gb|EFI09858.1| DNA polymerase III, delta subunit [Bacteroides sp. 3_1_19]
          Length = 340

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I ++ +   K++       F+ ++L   +   +  +  N      + S
Sbjct: 22  PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           + ++I++      + + + L   +   + + I++I      + +   L    +K      
Sbjct: 80  EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   +      I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193

Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + ++  I  +      E+I A     I  A  +A +F  +    P    L 
Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECS 271
                F  L   +  K+ S
Sbjct: 254 VLFNYFSNLLICYYSKDRS 272


>gi|255013534|ref|ZP_05285660.1| hypothetical protein B2_06470 [Bacteroides sp. 2_1_7]
          Length = 340

 Score = 72.3 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I ++ +   K++       F+ ++L   +   +  +  N      + S
Sbjct: 22  PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           + ++I++      + + + L   +   + + I++I      + +   L    +K      
Sbjct: 80  EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALAAATDKNGILYE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   +      I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193

Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + ++  I  +      E+I A     I  A  +A +F  +    P    L 
Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECS 271
                F  L   +  K+ S
Sbjct: 254 VLFNYFSNLLICYYSKDRS 272


>gi|198274668|ref|ZP_03207200.1| hypothetical protein BACPLE_00824 [Bacteroides plebeius DSM 17135]
 gi|198272115|gb|EDY96384.1| hypothetical protein BACPLE_00824 [Bacteroides plebeius DSM 17135]
          Length = 338

 Score = 72.3 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 118/326 (36%), Gaps = 15/326 (4%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA   +++ I ++ KN   +  V+   G +   I  + +     +       F+L V   
Sbjct: 1   MAKEVTYEEIVRNLKNRIYA-PVYFLMGEEDYYIDRIADYIIDTVLSETEKEFNLTVTYG 59

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +   +++   N      + S+ ++++++   + K++ + L   + K   + I+++  K 
Sbjct: 60  ADT--DVANVINAAKRYPMMSEYQVVVVKEAQSLKRI-EELAFYLQKPQKSTILVVCYKH 116

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             I +   L   AE   + +           +   I   L   +  I  +A +++   +G
Sbjct: 117 GSIDRRKKL--AAEIEKNGVLFESRKLKDSQIPGFISSYLKRKKVEIEPKASEMMAEFVG 174

Query: 179 GDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D      EL+KL          IT + ++  I  +      E+ +A ++  +  A  + 
Sbjct: 175 ADLNRMAGELEKLILTLPEGARRITPEQIERNIGISKDYNNFELRSALVEKDVLKANKII 234

Query: 238 DFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
            +F  +    P    L      F  L   +   E S+      +           +  + 
Sbjct: 235 KYFEENPKNNPLQMTLAILFNFFSNLMLAYYAPEKSDQGIAAQLGLKSP---WQAKEYMA 291

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLAR 321
            ++R ++   V + +H I      ++
Sbjct: 292 -AMRRYSGVKVMQIIHAIRECDARSK 316


>gi|221069984|ref|ZP_03546089.1| DNA polymerase III, delta subunit [Comamonas testosteroni KF-1]
 gi|220715007|gb|EED70375.1| DNA polymerase III, delta subunit [Comamonas testosteroni KF-1]
          Length = 350

 Score = 72.3 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%)

Query: 76  STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131
           S SLF+ K+I  I I +    K     L+++      N   + +I    + K        
Sbjct: 70  SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATKTGAWF 129

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185
                + ++I   P  +  L   I + L +  + ++     +   Q     + G+ +A+ 
Sbjct: 130 GALDGNGVSIQVDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E+QKL+     +  ++   V+  + +     + ++  A + G++  ++ + D   A   
Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +     +  + ++++             +                    RIW    
Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290

Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329
               + ++  R+  AR  + L+  
Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313


>gi|163785168|ref|ZP_02179858.1| hypothetical protein HG1285_10983 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879562|gb|EDP73376.1| hypothetical protein HG1285_10983 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 332

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 126/326 (38%), Gaps = 25/326 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M      K ++K+   + L + V   YG +  L  + I++F K++   +H  F    L  
Sbjct: 1   MKEENIVKLLKKNISEINL-NPVIYIYGGEDLLKKQFIDKF-KSVGSNFH--F----LWG 52

Query: 61  LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEII-----IKNICNHI 113
            E+  N++   +   S SLFS + +  +   +    K   D ++E +     I +     
Sbjct: 53  DEV--NLTELKDIFGSASLFSSENVAVLWDIDSFVSKLSKDAVKEFLNFIKGINSPNKLF 110

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           ++ K  ++      + I    ++   I+            + + +    K+IS E  + L
Sbjct: 111 LVSKKEKVPAKEPFKTI---SSTATVINSPHLTPKAFELSVYKKIQREGKNISLENLKYL 167

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           ++ L  +   ++ E++KL  Y  E   IT++ +  +I     + I    N  ++  I NA
Sbjct: 168 ISKLPNNLYNTKQEIEKLLIYTAEKNEITKEDIDAVITTKPQVNIFVFQNQFLKKDI-NA 226

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRN 292
           +      +        +    L    LL KI   K+  +    K +  ++  I    ++ 
Sbjct: 227 VSTFQRLVEEGQHPFEIQSFILN---LLNKIIYFKDLIDKGTPKQLAFSKVGINYRPQQL 283

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIH 318
            ++ +  +W K+ +   +  +     
Sbjct: 284 AVENASNVWKKSELLNAIKYLYETEK 309


>gi|169834754|ref|YP_001715788.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408861|gb|ACA57271.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 327

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 33  LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
           LI + +  F K   +      +   ++  ++   I++  + F   IN+      K++IL+
Sbjct: 17  LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75

Query: 89  EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139
           E     +   K ++ L + +        + + S        I KN+ ++K  +    ++ 
Sbjct: 76  ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D   ++  +          +I+ EA  + +       IA   E++KL   CL   
Sbjct: 136 GEFQSD---YVKKVCNSIFAKHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + + + I   +   I ++ ++  +  +          L       ++ +  L   +
Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249

Query: 260 LLEKIHI 266
           +L++  +
Sbjct: 250 MLQEARL 256


>gi|255034858|ref|YP_003085479.1| DNA polymerase III, delta subunit [Dyadobacter fermentans DSM
           18053]
 gi|254947614|gb|ACT92314.1| DNA polymerase III, delta subunit [Dyadobacter fermentans DSM
           18053]
          Length = 339

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 100/262 (38%), Gaps = 14/262 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +   I  +  + +  +       F+  VL   +   +++   +        
Sbjct: 18  RPLYFLHGDEPYYIDAIAEELENKVVPESERGFNQFVLYGKDT--DMAGVLSYARRFPFM 75

Query: 81  SKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133
           ++++++L++     N   +K+    LE+  +  + + +++    +N  ++ + L K    
Sbjct: 76  AERQLVLVKEAHRLNGIEQKEQQQRLEDYALNPVPSTVLVFCYHANADERKSYL-KAC-- 132

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             + + +         L D +          IS +A Q+L+ N+G D     NE++K+  
Sbjct: 133 NANGVVVQSKKMYDNKLPDWVASFCQHEGVKISPKAVQMLVDNIGNDLKRLSNEIRKIMV 192

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHA-LL 251
               D  I    ++  +  +    + E   A +   +  A  +A FF ++ K    A +L
Sbjct: 193 NLRVDEGIDASAIEKFVGISKEYNVFEFQKALMHRDVLKANQIAAFFASNPKDNPLAPVL 252

Query: 252 HGFLQKFQLLEKIHIIKECSNI 273
                 F  L   H  ++ S  
Sbjct: 253 IILFGFFSKLLLTHAARDKSEK 274


>gi|298373218|ref|ZP_06983208.1| DNA polymerase III, delta subunit [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298276122|gb|EFI17673.1| DNA polymerase III, delta subunit [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 342

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 118/332 (35%), Gaps = 36/332 (10%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           MA +++ ++             ++   G +   I ++ +  ++N         +  V+  
Sbjct: 14  MADLKAGRYA-----------PIYFLMGDEPYFIDKISDYIEQNAVAEDERDMNQTVMYG 62

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KS 118
            +++  I     E       +++++++++     K+ +D LE  +   +    ++   K 
Sbjct: 63  KDVK--IEDVIIEARRYPFMAERRVVIVKEAQNLKRNIDKLELYLKAPVQTTTLVFCYKY 120

Query: 119 NEIKKNNTLRKIAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           +++       K  E+         I  Y D    + + I          I+ +A  +L  
Sbjct: 121 DKLDGRKKYVKEIERIGVLFHSATI--YDD---RIPEWIVRYCSEVGVKINAQAANMLAN 175

Query: 176 NLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           N+G D +    E+ KL           I+ + V+  +  +      E+  A  +      
Sbjct: 176 NIGNDLLRIAGEIDKLKIAVNDGRTDTISPEIVERNVGISKEYNNFELTAALGKKDALTV 235

Query: 234 IMLADFFLASKMPSHALLHGFLQ----KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
             + D+F   K P + ++   L      F  L   H++K+    S E + Q+   N   +
Sbjct: 236 YRIVDYF--GKSPKNFVIQVTLAVVYNFFVNLLHYHLLKD---KSPESVSQRVGINRFFV 290

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                  + R++    +R  +  I      ++
Sbjct: 291 --KDFAAAARLYPHAKIRRIIGYIRDTDAKSK 320


>gi|255691901|ref|ZP_05415576.1| DNA polymerase III, delta subunit [Bacteroides finegoldii DSM
           17565]
 gi|260622454|gb|EEX45325.1| DNA polymerase III, delta subunit [Bacteroides finegoldii DSM
           17565]
          Length = 339

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 116/325 (35%), Gaps = 15/325 (4%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  + +    N+       F+L V+   +   +++T  N      + 
Sbjct: 21  RPVYYLMGEESYYIDLIADYITNNVLNETEKEFNLTVVYGAD--ADVATVINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE     +
Sbjct: 79  SEHQVVVVKEAQVIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKVGV 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                   +  L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESKKIKEAQLPAFISSYMKRKGVDMEPKATAMLADFVGSDLSRLTGELEKLIITLPAG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQ 256
              +T + ++  I  +      E+ +A ++  I  A  +  +F  + K     +    L 
Sbjct: 196 QRRVTPEQIERNIGISKDYNNFELRSALVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F     + +     + S + +            ++ +  ++R +      + + +I + 
Sbjct: 256 NFYS--NLMLAYYAPDKSEQGVANMLGLKTTWQAKDYIA-AMRKYTGVKTMQIVGEIRYA 312

Query: 317 IHLAR--KKKYLEK-NIIFQTILYI 338
              ++  K   +   +I+ + +  I
Sbjct: 313 DAKSKGVKNSSMTDGDILRELVFNI 337


>gi|169824484|ref|YP_001692095.1| putative DNA polymerase III subunit delta [Finegoldia magna ATCC
           29328]
 gi|167831289|dbj|BAG08205.1| putative DNA polymerase III delta subunit [Finegoldia magna ATCC
           29328]
          Length = 332

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 127/327 (38%), Gaps = 32/327 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            ++   N  LS+ + + +G +K  I + ++  K++ +    D + L          +   
Sbjct: 6   AKQKLDNNLLSN-LVLIHGEEKFYIEKYLSLIKEHYNAQSFDEYDLS---------DFEK 55

Query: 70  FWNEINSTSLFSKKKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEI 121
            ++   +  +FS K++ILI         +S  K  +D L   I       +III S   +
Sbjct: 56  IYSSSETIPMFSDKRLILIDDVDLSKTGISKNKDNIDKLMLYIKNIPEYTLIIITSYGNV 115

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLI-----EESLLIGQKSISKEAKQILLAN 176
            K+  L+   E       I     N+      I      + L     +I  E    L+ N
Sbjct: 116 FKSKLLK---EIAHYGADIEFNKLNRNQFKAYIINYLKGKKLNNNIVNIFIEYSLYLIKN 172

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                I   NEL K  +  LE   ITEQ +  +I + +   I ++ ++  Q  +   I  
Sbjct: 173 SEKTLIDVNNELDKFKN--LEKEEITEQDLNSLI-NQYDKNIFDLTDSIAQKNLSETIYY 229

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            D  +     S   LH  ++ F+ L  +  +     +S  +I +K +  I   + N +Q 
Sbjct: 230 LDLLINDTSDSFKTLHMIIRLFRNLLYLKELLRLK-VSPNEITKKLK--ISSYELNKIQN 286

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKK 323
            ++IW  + +R  +HK+       +  
Sbjct: 287 FVKIWRYDQLRFAIHKMYEIEITLKSN 313


>gi|325295699|ref|YP_004282213.1| DNA polymerase III delta [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066147|gb|ADY74154.1| DNA polymerase III delta [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 314

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 102/269 (37%), Gaps = 26/269 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++    +++      L     + +G +  L      QF K +S        ++ +  
Sbjct: 1   MKVVKVQDVLKQLKTG-KLPFKKVLIHGEEAYL----TEQFLKKVS-------EVIDIEK 48

Query: 61  LEIQKNISTFWNEINSTSLFSKK------KIILIENLSTEKKVLDCLEEIIIKNICNHII 114
             + +NI +F+N   + SLF K        +  +  +  +K   +     I       ++
Sbjct: 49  FYVDENIDSFFNFTGT-SLFGKSPVPVVLNVERLNEVLRKKVDKERFLNTIKTFDEFILV 107

Query: 115 IIKSNEIKK-NNTLRKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172
            ++  + KK  + L    +KF     +   Y +    +  L+++      K I+ E  ++
Sbjct: 108 SMEELDYKKLKSELFSAIQKFIDATVVSERYSE--KAIYSLLKKKFDSAGKKITPEVLKL 165

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           ++  +G D    RNE  KL  Y      +T + VK ++  +  + + E+I   ++G    
Sbjct: 166 IVETVGTDLRELRNETDKLILY---PDELTPESVKLLLFSSGKVNVFELIFPLLEGNRRK 222

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLL 261
            +   +  L       +++     + + +
Sbjct: 223 FLEQVEILLNCGGEPLSIIGLLQTQLRQI 251


>gi|86606177|ref|YP_474940.1| DNA polymerase III subunit delta [Synechococcus sp. JA-3-3Ab]
 gi|86554719|gb|ABC99677.1| DNA polymerase III, delta subunit [Synechococcus sp. JA-3-3Ab]
          Length = 325

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 101/270 (37%), Gaps = 14/270 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++++G D   + + ++Q ++ +       F+   L             N   +  L S
Sbjct: 2   PVYLYWGDDTYRLMQAVHQLREQVLDPDWAAFNYDRLPPESTLAG----LNLAMTPPLGS 57

Query: 82  KKKIILIENLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLR--KIAEKFT 135
             +++ +E  +  +   +     LE  +        +++ +   K +  L+  K+ ++  
Sbjct: 58  NARLVWLEETTLTQDCPEEWVRELERTLASLPPTTHLLLTTRN-KPDGRLKSTKLLKQVA 116

Query: 136 SVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                      ++  ++  +          +S EA Q L   +G D      EL+KL+ +
Sbjct: 117 LAREFPQLAPWDEEGILRQVYSEARQRDLKLSPEAAQKLAEAVGNDSRRLAMELEKLALF 176

Query: 195 CLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
            +     I+ + ++ ++         ++  +  QG +  A+ +    L    P+  +L  
Sbjct: 177 TVNQRDPISPEQIEALVP-ASAYNSFQLAASLRQGNLDQALRILAHLLDHNEPALKILAV 235

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
            + +F+    + ++ E      + I QK E
Sbjct: 236 LVGQFRTWLWVKLLLEEGERDPKVIAQKAE 265


>gi|59800732|ref|YP_207444.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae FA 1090]
 gi|240112390|ref|ZP_04726880.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11]
 gi|240122970|ref|ZP_04735926.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332]
 gi|240127676|ref|ZP_04740337.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035]
 gi|254493190|ref|ZP_05106361.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291]
 gi|268598450|ref|ZP_06132617.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11]
 gi|268681590|ref|ZP_06148452.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332]
 gi|268686060|ref|ZP_06152922.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035]
 gi|293399568|ref|ZP_06643721.1| DNA polymerase III, delta subunit [Neisseria gonorrhoeae F62]
 gi|59717627|gb|AAW89032.1| putative DNA polymerase [Neisseria gonorrhoeae FA 1090]
 gi|226512230|gb|EEH61575.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae 1291]
 gi|268582581|gb|EEZ47257.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae MS11]
 gi|268621874|gb|EEZ54274.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae PID332]
 gi|268626344|gb|EEZ58744.1| DNA polymerase III subunit delta [Neisseria gonorrhoeae SK-93-1035]
 gi|291610137|gb|EFF39259.1| DNA polymerase III, delta subunit [Neisseria gonorrhoeae F62]
          Length = 332

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 87/260 (33%), Gaps = 19/260 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G ++ L  E ++  +       +        +A     + +       +  LF+
Sbjct: 16  PLYVIHGEEELLRIEAVDALRAAAKKQGYLNREAYTADASF---DWNELLQTAGNAGLFA 72

Query: 82  KKKIIL--IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K++   I N    K   + L++   +   + + ++   +++K     K          
Sbjct: 73  DLKLLELHIPNGKPGKNGGEALQDFAARLPEDTVTLVLLPKLEKTRLQSKWFAALAAKGE 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                P     L   I   L      I  +A  +    + G+ +A+R E+ KL+    + 
Sbjct: 133 VWEAKPVGAAALPQWIRGRLDKIGLGIEADALALFAERVEGNLLAARQEIDKLALLYPKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF-------------FLASKM 245
             +     +  + +       ++  A ++G +     L D               +A  +
Sbjct: 193 HAVNIDEAQTAVANVARFDAFQLAGAWMKGDVPRVCRLLDGLEEEGEEPVLLLWAVAEDV 252

Query: 246 PSHALLHGFLQKFQLLEKIH 265
            +   L   L++ Q ++ + 
Sbjct: 253 RTLIRLAAALKQGQSIQSVR 272


>gi|262195554|ref|YP_003266763.1| DNA polymerase III subunit delta [Haliangium ochraceum DSM 14365]
 gi|262078901|gb|ACY14870.1| DNA polymerase III, delta subunit [Haliangium ochraceum DSM 14365]
          Length = 338

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 104/302 (34%), Gaps = 13/302 (4%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           +   + + T        V+I +     L+   +   +          F+  V+ A     
Sbjct: 2   ADSLLDRVTAGKLS--PVYILHSEHPLLVDRAVAAIRDAAVPENARGFNYDVVEAKGASA 59

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKN 124
                     +  + ++++++L+ +L+      L  +   +     + +++  ++++ K 
Sbjct: 60  Q--RILAAAQTLPMMAERRMLLVRDLAAMSSAELAKMVPYLGSPNPSTVLVGVTSKLDKR 117

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
                 A+K  ++  +S        L   +            +EA + L+  +G D    
Sbjct: 118 VKFYAAAKKAKALHELS----APRDLTGWLASEAKERGIKAEREACRRLVDVVGSDMSRL 173

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              L++LS +  +   I    V +++ DT    + E+ +A   G   +A+         +
Sbjct: 174 ALALEQLSLFT-DGRRIAADDVDELVADTRERSVFELTDALGAGSRADALAAVASLCEQR 232

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             +  ++    +  + L     +     +S  +  +        + +  ++   + ++ +
Sbjct: 233 QSAIGVVVMVGRFMRQLALCR-VASAQRLSKGEAAKLVGAPPFVIDK--MKRQAQRYDDD 289

Query: 305 LV 306
            +
Sbjct: 290 GL 291


>gi|291451268|ref|ZP_06590658.1| DNA-binding protein [Streptomyces albus J1074]
 gi|291354217|gb|EFE81119.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 335

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 14/292 (4%)

Query: 59  NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113
           +  ++  +     T   E+ S SLF+++K++++ N        +  ++  +   +    +
Sbjct: 50  DVRDLTSDQLQPGTLA-ELTSPSLFAERKVVVVRNAQDLSADSVKDVKAYLGAPVEEITL 108

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +++ +   K    L    +     +A          L   +        ++ + EA Q L
Sbjct: 109 VLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRALGRTATPEASQTL 167

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           +  +G D     + + +L+     +  I E  V              + +  ++G+   A
Sbjct: 168 VDAIGSDLRELASAVTQLA--ADVEGNIDEAVVGRYYTGRAEASSFTVADRAVEGRTAEA 225

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +    + L++ +    +        Q +  I  +          + ++      P K + 
Sbjct: 226 LEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 280

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +++ +R W  + V   L  +       +      +  + + ++ IA  A   
Sbjct: 281 VRQQMRGWTPDGVATALRAVALADAGVKGGGDDPEYALEKAVVAIATAARAR 332


>gi|148244300|ref|YP_001218994.1| DNA polymerase III delta subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326127|dbj|BAF61270.1| DNA polymerase III delta subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 339

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 128/324 (39%), Gaps = 17/324 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G++  LI + + Q KK       D      +++     + +  + EI++TSLFS 
Sbjct: 19  IYFIFGAEILLIEQSLAQIKKAAKQKKFDEKVSFEIDSNF---DWNQIFEEISTTSLFSP 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KNNTLRKIAEKFTSV 137
           K+II   ++      K  + L EI+     N ++I+ + ++    + +   KI E+  S+
Sbjct: 76  KRIIECRLKTGKIGIKGANNLVEIVNTLPNNILLIVSTGKLNIAQQKSKWFKILEQTGSL 135

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I  +     HL+D I + +       + E  Q +     G+  AS   +QKL      
Sbjct: 136 --IQHFEVQNNHLVDWITKQMAELGLKDNIEIAQNIAFCTEGNLTASMQAIQKLKI-AYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +  I  Q             + ++I+A + G       +    +++ +    L H    +
Sbjct: 193 NGKINTQEYLKQANQQSKYTVYDLIDAALFGNSNQVNKIYQTLISNTIMPIQLSHALYLE 252

Query: 258 FQLLEKIHII-KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            + + ++ I  ++  + +      +    +   ++ I+  +L+  +    ++ L  +   
Sbjct: 253 IKSITEMSIELRQVKDTNIVLKNHQ----VWNTRKPIITNALKHHSYQHFQKILLSLGCI 308

Query: 317 IHLARKKKYLEK-NIIFQTILYIA 339
               +    L   + +   +L +A
Sbjct: 309 DRSIKNMDNLNVIDELHTLLLSLA 332


>gi|145628144|ref|ZP_01783945.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21]
 gi|144979919|gb|EDJ89578.1| DNA polymerase III subunit delta [Haemophilus influenzae 22.1-21]
          Length = 344

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  N   +  +    D  + + +++   Q +         S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETENSICQVANQQGFDEKNSIQVDS---QTDWVQLIESCQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V+ I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LH 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPIILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIMTTEKLPTQQIKAEFDRLKIWQNRRPLFLSAIQRLTYQKLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   L +++
Sbjct: 315 ELANIERLTKQE 326


>gi|89899570|ref|YP_522041.1| DNA polymerase III subunit delta [Rhodoferax ferrireducens T118]
 gi|89344307|gb|ABD68510.1| DNA polymerase III, delta subunit [Rhodoferax ferrireducens T118]
          Length = 354

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 107/288 (37%), Gaps = 20/288 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L+ E  +  +           S   +       + S       S SLF+ 
Sbjct: 19  LYTVYGDEPLLVQEAADAIRAFARTQGFTERSSHTVAGAHF--DWSEVLAAGGSLSLFAD 76

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICN----HIIIIKSNE-IKKNNTLRKIAEKFT 135
           K+I+   I +    K+    L+++  +   N     ++++   + + K +      E F 
Sbjct: 77  KQIVELRIPSGKPGKEGGVALQQLAEQARGNESTLTLVMLPRLDKLGKGSAWFGALESFG 136

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISK-EA----KQILLANLGGDRIASRNELQK 190
             LA+   P  +  L   I + L +  + ++  EA     Q     + G+ +A+  E+QK
Sbjct: 137 ITLAVE--PVERNALPAWIAQRLAVQGQRVAAGEAGQHSLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        +T   ++  + +     + ++ +A + G++     + D   A    +  +
Sbjct: 195 LAL-LYPPGELTFDQIESAVLNVARYDVFKLSDAVLSGQVVRVQRMLDGLQAEGEAAVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            +   +  + L+++       +     + ++    +   +  + +  L
Sbjct: 254 HYTLAEDIRALKRVKDAMNRGSPLPMALREQR---VWGTRERLFERVL 298


>gi|218262045|ref|ZP_03476661.1| hypothetical protein PRABACTJOHN_02333 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223626|gb|EEC96276.1| hypothetical protein PRABACTJOHN_02333 [Parabacteroides johnsonii
           DSM 18315]
          Length = 340

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 97/282 (34%), Gaps = 20/282 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G +   + ++ +   +N+       F+ +++   +   + ++  N      + S
Sbjct: 22  PVYIMMGDEPFFMDQITDLLLENVLEESERDFNQIIMYGAD--ADAASIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           K +++++      + + + L   +   + + ++++      + +   L    +K      
Sbjct: 80  KYQLVVVREAQLIRDI-ELLSNYVKNPLMSTVLVVNYKYKNLDRRKALASATDKTGVLFE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   + +    I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPAFIASFMQLRSIGIDGKAAQMLSDFLGNDLSRLSKELDKLALILP 193

Query: 197 EDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + V+  I  +      E+I A     +  A  +A +F  +    P    L 
Sbjct: 194 EKGVKRITPELVEQNIGISKEYNNFELIKALAMKDVLKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
                F  L   +      + S   ++           ++ L
Sbjct: 254 VLFNYFSNLLICYY---TKDRSEAGLMAALGLRGTFQVKDYL 292


>gi|145638256|ref|ZP_01793866.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII]
 gi|145272585|gb|EDK12492.1| DNA polymerase III subunit delta [Haemophilus influenzae PittII]
 gi|309751410|gb|ADO81394.1| DNA polymerase III subunit delta [Haemophilus influenzae R2866]
          Length = 344

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  N   +  +    D  + + +++   Q +         S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETENSICQVANQQGFDEKNSIQVDS---QTDWVQLIESCQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V+ I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LH 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPIILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIMTTEKLPTQQIKAEFDRLKIWQNRRPLFLSAIQRLTYQKLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   L +++
Sbjct: 315 ELANIERLTKQE 326


>gi|221213178|ref|ZP_03586153.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD1]
 gi|221166630|gb|EED99101.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD1]
          Length = 364

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 114/296 (38%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKALAAADNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTAAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307


>gi|161525899|ref|YP_001580911.1| DNA polymerase III subunit delta [Burkholderia multivorans ATCC
           17616]
 gi|189349382|ref|YP_001945010.1| DNA polymerase III subunit delta [Burkholderia multivorans ATCC
           17616]
 gi|221202479|ref|ZP_03575510.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2M]
 gi|221208064|ref|ZP_03581069.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2]
 gi|160343328|gb|ABX16414.1| DNA polymerase III, delta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333404|dbj|BAG42474.1| DNA polymerase III delta subunit [Burkholderia multivorans ATCC
           17616]
 gi|221171967|gb|EEE04409.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2]
 gi|221177652|gb|EEE10068.1| DNA polymerase III, delta subunit [Burkholderia multivorans CGD2M]
          Length = 364

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 114/296 (38%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +   +  + ++++    +              +  +A
Sbjct: 76  RQLIELRIPSGKPGKEGADALKALAAADNPDALMLVTLPRLDAATQKSAWFTALQNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++       A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAPGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                +++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGVLSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L   ++ ++ + L
Sbjct: 255 VEELRTLLRIK-RGTAAGKPLATLLRENR--VWGPRERLIGPALNRVSEAVLEKAL 307


>gi|313888867|ref|ZP_07822527.1| DNA polymerase III, delta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845040|gb|EFR32441.1| DNA polymerase III, delta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 336

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 124/327 (37%), Gaps = 25/327 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++F+G +K L+   +              F+       E++       +   +  + + 
Sbjct: 15  AYLFFGPEKYLMENAVGYLINKYVKGTE-AFNYTKFKGSEVK--PEDLISACETYPVMND 71

Query: 83  KKIILIENLS---TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTSV 137
           KK++L+ ++     E  + D   E +  N+ + +I+I   +  IKK     K  +K    
Sbjct: 72  KKVVLVRDVVDFLGENDLKDSFYEFL-DNLSDFVILIFWDTANIKKTTKFYKAFKKKDRD 130

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD-------RIASRNELQK 190
           +  +    N + L + I+   +   K IS+    + +   G +           + E+ K
Sbjct: 131 MDFA--KLNPVDLNNFIKGYFIRKGKEISQSEVSLFIGESGYNSKNEDVSLFDLKTEMDK 188

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           ++S+  ++  I+ + +   I +     I + ++A +  K   ++           PS  +
Sbjct: 189 IASHA-KNKKISREDISSTITENIDTNIFKFLDAMMGRKREESLKELHNLYKLGEPSLRI 247

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309
               +++ + L    I+    NIS   I+ K E KN    K    + +          E 
Sbjct: 248 FTMIIRQVKNLLSYKILS-TKNISQNDIMNKMEVKNFELKKIRGFERNFSKEFLIDFYEE 306

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTIL 336
           L K D       K   +++ +I +T++
Sbjct: 307 LIKTDELF----KTSSIDEKLIMETLI 329


>gi|319775145|ref|YP_004137633.1| DNA polymerase III subunit delta [Haemophilus influenzae F3047]
 gi|329122937|ref|ZP_08251508.1| DNA-directed DNA polymerase III delta subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317449736|emb|CBY85943.1| DNA polymerase III, delta subunit [Haemophilus influenzae F3047]
 gi|327471868|gb|EGF17308.1| DNA-directed DNA polymerase III delta subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 344

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 118/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEKFTS 136
            K+I+ +        +L   L+E+I     + ++I++    +  I+K      + +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKFAKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 AILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   L +++
Sbjct: 315 ELANIERLTKQE 326


>gi|302534355|ref|ZP_07286697.1| LOW QUALITY PROTEIN: DNA polymerase III, delta subunit
           [Streptomyces sp. C]
 gi|302443250|gb|EFL15066.1| LOW QUALITY PROTEIN: DNA polymerase III, delta subunit
           [Streptomyces sp. C]
          Length = 346

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 10/257 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLFS++K++++ N        +  L+  I +      ++++ +  +K  
Sbjct: 56  PGTLA-ELTSPSLFSERKVLVVRNAQDLGADTVKELKAYIAEPYEEITLVLLHAGGVKGK 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 115 GVLDAARKAGAREVACPKMTKAADRLSF-VRGEFRTLGRSATPEACQTLVDAIGSDLREL 173

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            +   +L      +  I E  V              + +  ++G+   A+    + LA+ 
Sbjct: 174 ASAAAQLC--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATG 231

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+             + +       P K + +++ +R W+ +
Sbjct: 232 VAPVLITSALAQAVRAIGKL--ASAPRGARPGDLARDLGMP--PWKIDRVRQQMRGWSAD 287

Query: 305 LVRETLHKIDHRIHLAR 321
            V + L  +     L+R
Sbjct: 288 GVADALRAVALADALSR 304


>gi|269139985|ref|YP_003296686.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202]
 gi|267985646|gb|ACY85475.1| DNA polymerase III subunit delta [Edwardsiella tarda EIB202]
 gi|304559818|gb|ADM42482.1| DNA polymerase III delta subunit [Edwardsiella tarda FL6-60]
          Length = 344

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 118/321 (36%), Gaps = 20/321 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ I   +   +    L   +F+    G++  LI E ++  ++       D    V L+ 
Sbjct: 1   MSRIYPEQLGAQLQDGLRACYFIL---GNEPLLIQESLDLIRQRARAHGFDEQFSVTLDP 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
                +    +++  S SLF+ ++I+ +   +      + + L ++      + +++++ 
Sbjct: 58  HT---DWDALFSQSQSMSLFASRQILTLTLPDNGVNAAMGERLSQLAALLHPDLLLLLRG 114

Query: 119 NEIKK---NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
             + +   N    K+         +SC    +  L   +       Q  + + A Q+L  
Sbjct: 115 PRLTRTQENAAWYKLL--SPQATLVSCQTPEQTQLPRWVANRARQMQLQLDEAALQLLCY 172

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
              G+ +A    L +LS     D  +T   V+  + D         ++A +  +   A  
Sbjct: 173 CYEGNLLALSQALGRLSL-LYPDGRLTLPRVEQAVNDAAHFSPFHWLDAMLAARGKRAWH 231

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNIL 294
           + +           L+    +     E + +++  S  +   +    +K+ +   +R +L
Sbjct: 232 ILNQLRQEGCEPVVLVRTVQR-----ELLLLLQLKSGATQTPLRTLFDKHKVWQNRRPLL 286

Query: 295 QESLRIWNKNLVRETLHKIDH 315
            ++L+  +   + + +  +  
Sbjct: 287 TQALQTLSLTQLHQAVALLSQ 307


>gi|297199607|ref|ZP_06917004.1| DNA polymerase III, delta subunit [Streptomyces sviceus ATCC 29083]
 gi|197713465|gb|EDY57499.1| DNA polymerase III, delta subunit [Streptomyces sviceus ATCC 29083]
          Length = 337

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 108/309 (34%), Gaps = 14/309 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + K T +  L   V +  G ++ L+ +   Q     +        +  L + ++Q    T
Sbjct: 9   MAKKTAHDDLLAPVTLAVGQEE-LLLDRAVQEVVAAARAADADTDVRDLTSDQLQ--PGT 65

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +        ++++ +   K    L
Sbjct: 66  LA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGAAKGKALL 124

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +     +A          L   + +      +S + EA Q L+  +G D     + 
Sbjct: 125 DAARKAGAREVACPKMTKPADRLAF-VRQEFRATGRSATPEACQALVDAIGSDLRELASA 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L      +  I E  V              + +  ++G+   A+    + LA+ +  
Sbjct: 184 VSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLATGVAP 241

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +        Q +  I  +          + ++      P K + +++ +R W  + V 
Sbjct: 242 VMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGVA 296

Query: 308 ETLHKIDHR 316
           + L  +   
Sbjct: 297 DALRAVAEA 305


>gi|152978424|ref|YP_001344053.1| DNA polymerase III subunit delta [Actinobacillus succinogenes 130Z]
 gi|150840147|gb|ABR74118.1| DNA polymerase III, delta subunit [Actinobacillus succinogenes
           130Z]
          Length = 349

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 91/253 (35%), Gaps = 21/253 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++   G D  L+ E  +   K  +    D    V ++      +         S  LF  
Sbjct: 22  LYYLVGQDPLLLTESRDLIIKTATAQGFDERREVTVDNAT---DWIDLQERCQSRGLFFN 78

Query: 83  KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT------ 135
           K+II +        +L   L E +     + ++I++         + K+ EK        
Sbjct: 79  KQIISLILPENLTALLQKNLAEFMAVLNEDVLLIVQF------VRISKLFEKSEWHKRAL 132

Query: 136 ----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
               S++ ++C       L       +     ++ ++A Q+L  +   + +A +  L+ L
Sbjct: 133 NYETSIVQVNCQTPTAEQLPRWAANRVKAMGLTVGQDALQLLCYSYENNLLAMKQALELL 192

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +     D  +T + V+ +   +      + I+A + GK   A  + +   A  +    LL
Sbjct: 193 AL-LHSDKKLTFERVQKVAEQSSTFTAFQWIDAVLAGKEARARRILNGLRAEDVQPVVLL 251

Query: 252 HGFLQKFQLLEKI 264
               ++   L ++
Sbjct: 252 RTLQRELMTLLEL 264


>gi|258647117|ref|ZP_05734586.1| DNA polymerase III, delta subunit [Prevotella tannerae ATCC 51259]
 gi|260853072|gb|EEX72941.1| DNA polymerase III, delta subunit [Prevotella tannerae ATCC 51259]
          Length = 344

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 106/328 (32%), Gaps = 30/328 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I  L +             F+L+ L   ++   I    +      + +
Sbjct: 27  PVYFLMGEESYYIDRLADLLVLKALRPEERDFNLITLYGADVV--IDNVLDAAKGFPMGA 84

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNT----LRK---IAE 132
            + ++L++     K   + LE  + +   + I++   K+  I +       L K   + E
Sbjct: 85  PRLVVLVKEAQNIKDY-ERLEYYLKQPQASTILVFCYKNGTIDRRKKGIALLGKVGVLFE 143

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                     Y      L   I   L   Q+ I   A Q+L+  +G D      EL KL 
Sbjct: 144 SKRL------Y---DSQLPSFINAYLASKQRKIEPAALQLLIEYVGADLNRMAAELDKLC 194

Query: 193 SYCLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHA 249
                    I+   V  II  +    + E+ +A  Q  +  A  +  +F  +  + P   
Sbjct: 195 LSSPSTALSISVASVAAIIGVSKEYNLYELQDALAQKDVLKAYKIEKYFDGNPKEFPIQR 254

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            L    + F  L   +   + +       +  ++       R     ++R +    V   
Sbjct: 255 TLPTLFRFFSNLMLAYYSMDKTESGIASWVGVSD----WQFRKTYAVAMRNYRAEKVMRI 310

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337
           + +I      AR K      I    ++ 
Sbjct: 311 VAEIRRT--DARSKGVGSTTISSGELMK 336


>gi|169834635|ref|YP_001693256.1| DNA polymerase III delta subunit superfamily protein [Clostridium
           botulinum B1 str. Okra]
 gi|169123183|gb|ACA47018.1| DNA polymerase III, delta subunit superfamily [Clostridium
           botulinum B1 str. Okra]
          Length = 327

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 33  LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
           LI + +  F K   +      +   ++  ++   I++  + F   IN+      K++IL+
Sbjct: 17  LITDNVTAFNKTKKLLCSQIINPKLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75

Query: 89  EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139
           E     +   K ++ L + +        + + S        I KN+ ++K  +    ++ 
Sbjct: 76  ELPLFKTGVAKKINGLLKALKSIPDETSVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D   ++  +          +I+ EA  + +     +   +  E++KL   CL   
Sbjct: 136 GEFQSD---YVKKVCNSIFARHNTAITNEALDLFVNKT-LNMDIALQEIKKLL--CLNKN 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + + + I   +   I ++ ++  +  +          L       ++ +  L   +
Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249

Query: 260 LLEKIHI 266
           +L++  +
Sbjct: 250 MLQEARL 256


>gi|110004108|emb|CAK98447.1| conserved hypothetical protein [Spiroplasma citri]
          Length = 321

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 121/308 (39%), Gaps = 32/308 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F+ YG D  LI   + + K    I   + + L   N LE     S   +  N+  +FS+
Sbjct: 1   MFLIYGEDAFLIK--MKKNKILKKINPDNEYDLQEYNYLE-DSLPSILND-ANTIPMFSE 56

Query: 83  KKIILIEN-----------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR--- 128
           K++I++ +               K  L  L E +     +  II      K +N L+   
Sbjct: 57  KRVIIVNDSYFLTEEKIKAKIDNKNHLTSLMEYLAAPNPSTFIIFICPVNKLSNRLKITK 116

Query: 129 KIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           ++    + + AI+  Y +    L+  I++ +     +I++     ++  L  +    +NE
Sbjct: 117 QMLALTSVLKAINLSYNE----LIKFIDDYITKNNGTINQNLIPKIVEYLPNNLYIIKNE 172

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+KL      +  IT   + + +       I ++++  ++  + + ++   +     + S
Sbjct: 173 LEKLLLI---NSKITMDLIANNMTKYLDTDIFKLVDDLLKNDLNSFLINYHYLQERGLNS 229

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            ALL   +    +  +  I+      +  +I +  +  I P +   + E +  ++   + 
Sbjct: 230 IALL-ALITNSVIFTRDIIVLSVLKKTPSQIAEILQ--IHPFRVKKISEHMHNFS---IN 283

Query: 308 ETLHKIDH 315
           +  + I  
Sbjct: 284 KANNIIQE 291


>gi|296140495|ref|YP_003647738.1| DNA polymerase III subunit delta [Tsukamurella paurometabola DSM
           20162]
 gi|296028629|gb|ADG79399.1| DNA polymerase III delta [Tsukamurella paurometabola DSM 20162]
          Length = 301

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 95/268 (35%), Gaps = 10/268 (3%)

Query: 55  LVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHI 113
           +  L A ++ ++      E+ S SLF++++I+++E+ +   K  +D + E          
Sbjct: 21  VTRLRAGDVDQSE---LAELLSPSLFAEERIVVLESAAEAGKAPVDLIVEAAQNPPDGIT 77

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           ++I+ +   +  ++    +K  + +       N    MD  +      +  +S E  ++L
Sbjct: 78  LVIEHSGGGRAKSMVAALKKAGATMVEVPAISNARDRMDFAKSEFRAQKVRVSDELVELL 137

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           + ++G D       + +L         +    V         +   EI +  + G++  A
Sbjct: 138 VDSVGKDLRELAAAIAQLV--ADTGGRVDLAAVNRYYAGRAEVTGFEIADKAVAGQVSAA 195

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +    +      P   +          + +I         + ++     E  + P K   
Sbjct: 196 MEALRWAQHRGTPHVLIADALADAVHSVARIR----GLGRTPDQYRDAGELGMAPWKVKK 251

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLAR 321
           + +  R W    V + L  + +     +
Sbjct: 252 MTQVARRWRAENVAQALDAVANANADVK 279


>gi|212712944|ref|ZP_03321072.1| hypothetical protein PROVALCAL_04042 [Providencia alcalifaciens DSM
           30120]
 gi|212684422|gb|EEB43950.1| hypothetical protein PROVALCAL_04042 [Providencia alcalifaciens DSM
           30120]
          Length = 344

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 115/311 (36%), Gaps = 29/311 (9%)

Query: 24  FIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           ++ +GS+  LI E    I    +      H  F+L      E   +    ++   + SLF
Sbjct: 21  YLIWGSEPLLIQESQDAIRLAARQQGFEEHFTFAL------EQNTDWDEIFSLCQALSLF 74

Query: 81  SKKKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           + ++++   +        + D L ++      + +       + + + L K  E      
Sbjct: 75  ASRQMLTLFLPENGPNAAMADKLAQLASLLHPDLL------LVLRGHKLTKAQENSAWFK 128

Query: 139 AIS-------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           AIS       C       L   + +     + ++  EA Q+L     G+ +     L++L
Sbjct: 129 AISQDSVYVSCLTPEYQRLPQWVSKRASQMRLALETEANQLLCYCYEGNLLGLAQALERL 188

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S     D  +T   V+  + D+        ++A + GK   +  + +      +    LL
Sbjct: 189 SL-LYPDGKLTYPRVESAVNDSAHFTPYHWVDAILAGKPRRSWHILEQLKQEDVEPVILL 247

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++  LL  +   ++ ++   + +  + +  +   +R +L E+L+  + + ++  L 
Sbjct: 248 RAIQRELMLLITLK--RQSTSTPLKTLFDQHK--VWQNRRGLLGEALQRLSLHQLQSALM 303

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 304 LLTQAEIHTKQ 314


>gi|152980551|ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinobacterium sp. Marseille]
 gi|151280628|gb|ABR89038.1| DNA polymerase III delta subunit [Janthinobacterium sp. Marseille]
          Length = 338

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 115/329 (34%), Gaps = 21/329 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++    +  L  E  ++ +K      +    ++V++                S SLF  
Sbjct: 19  LYVITSDEHLLALEAADKIRKAARAQAYSEREVLVVDRSF---KWGELLAANQSQSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           KK+I   I      K     L++       +++ +I   ++                   
Sbjct: 76  KKLIELRIPTGKPGKDGGKALQDYAASLSPDNVTLITLPKLDWATQKAAWVTSLQQASV- 134

Query: 141 SCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
             Y D     +  L   +   L   ++S ++E    +   + G+ +A+  E+QKL+    
Sbjct: 135 --YIDIPLIERAQLPAWLGVRLAAQRQSANRECLDFIADRVEGNLLAAHQEIQKLAL-LY 191

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  ++ + + D + +     + ++  A + G     + + +           +L    +
Sbjct: 192 PEGPLSFEQIHDAVLNVARYDVFKLNEAMLSGDTTRLVRMLEGLKGEGEALPLVLWAVAE 251

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KI 313
           + + L K+            ++ ++    I   +  +++ +LR      + + L    +I
Sbjct: 252 EVRTLLKLKAGV-AQGRPLSQLTKEYR--IWGPRERLVEPALRRLKLATLEDALQEAAQI 308

Query: 314 DHRIHLARKKKYLEKN--IIFQTILYIAQ 340
           D  +   R K++       + Q  L IA+
Sbjct: 309 DKMVKGLRAKQFSGDAWDAMLQLGLKIAR 337


>gi|317133022|ref|YP_004092336.1| DNA polymerase III, delta subunit [Ethanoligenens harbinense
           YUAN-3]
 gi|315471001|gb|ADU27605.1| DNA polymerase III, delta subunit [Ethanoligenens harbinense
           YUAN-3]
          Length = 345

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 110/331 (33%), Gaps = 12/331 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG +  L         +    +    F+L   +A     ++S     +    L +
Sbjct: 17  RLYLLYGEEGYLAAHYARALSERAIPSVR-EFNLHRFSADTF--DLSKLSAAVEHLPLMA 73

Query: 82  KKKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFT 135
           ++  ++++++  +    K       ++     + ++++    +   KK+   + + E   
Sbjct: 74  ERTCVVLQDIDPDTLKAKEWKEFLALLADAPASCVLVLAFTHVSYDKKSAHWKALIELAK 133

Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            S +A       K  L   + +       SIS  A   L    G D      E++KL++Y
Sbjct: 134 KSGVAEQFAVPTKRELEKWLAKRARGAGASISAAAADALAEACGADMNRMAAEMEKLAAY 193

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 I  + V  ++       I ++  A + G++  A+         K     +L   
Sbjct: 194 AAG-GEIGREAVDALVHKNIECSIYDLARAVLAGRLPAALETLGGLFDRKEEPVVILSAL 252

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            Q F  L +  +         +       +      RN L    R  ++  +R  L ++ 
Sbjct: 253 SQAFCDLYRAAVAVSAGKGQADLAADFPYRGREFRIRNAL-RDCRGLSEGYLRAALDRLL 311

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              H  +      +  + +  + +     + 
Sbjct: 312 AADHQLKSSGADSRLALERLCVDLTHLRKRG 342


>gi|160901432|ref|YP_001567014.1| DNA polymerase III subunit delta [Delftia acidovorans SPH-1]
 gi|160367016|gb|ABX38629.1| DNA polymerase III, delta subunit [Delftia acidovorans SPH-1]
          Length = 350

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 93/301 (30%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++ +G +     E  +  +       +   S   +       + S       S SLF
Sbjct: 17  RPLYVLHGDEPLQQQEAADAIRAAARAAGYTERSSYTVAGAHF--DWSAVLAAGGSLSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + ++I+ I   +    K     L++I      N   + ++    + K             
Sbjct: 75  ADRQIVEIRIPSGKPGKDGGAALQQIAESARGNDSTLTLVLLPRLDKATKTGAWFSALEA 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKE-----AKQILLANLGGDRIASRNELQK 190
             + +   P  +  L   I + L    + ++         Q     + G+ +A+  E+QK
Sbjct: 135 QGMTLQIDPIERAQLPAWIAQRLAAQGQRVAPGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+     +  +++  V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPEGELSQAQVEQAVLNVARYDVFKLSEAVLGGQLARVSRMLDGLQAEGTAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + + ++             +  +    +   K  + +  L           L
Sbjct: 254 HWTLAEDIRAICRVRDAMAAGQPLPMALRAQRIWGV---KERLFERLLPRITDAQAARLL 310

Query: 311 H 311
            
Sbjct: 311 Q 311


>gi|21674760|ref|NP_662825.1| hypothetical protein CT1948 [Chlorobium tepidum TLS]
 gi|21647973|gb|AAM73167.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 346

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 22/225 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80
            V+ F G +  L  E+  Q K  I  + ++   + +VL   ++   +    +  +   +F
Sbjct: 15  PVYFFQGPESWLKEEIETQLKAAIFPSENEAALNTLVLYGPDLT--LGQIVSAASEYPMF 72

Query: 81  SKKKIILIENLSTEKKVLD---------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           ++KK++++      KKV D          L   +       ++++ ++EI+K        
Sbjct: 73  TEKKLVVVRQFDKLKKVTDKTESQRQEKSLLSYLSDPPSFTVLVLDADEIEKTE-----L 127

Query: 132 EKFTSVLAISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           EK       +   D        I   E           EA +     +         E++
Sbjct: 128 EKAPYKHLKAFRHDFGAIKNAEIFAAERAREAGWEFEPEALKTFSGYIEPSSRLICQEIE 187

Query: 190 KLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           KL+ Y      +  IT   V D +  +    + E+  A +   + 
Sbjct: 188 KLTLYASNKRPERRITLDDVCDCVGISRKYNVFELEKALVSKNLR 232


>gi|329934622|ref|ZP_08284663.1| DNA polymerase III, delta subunit [Streptomyces griseoaurantiacus
           M045]
 gi|329305444|gb|EGG49300.1| DNA polymerase III, delta subunit [Streptomyces griseoaurantiacus
           M045]
          Length = 334

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 83/252 (32%), Gaps = 10/252 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
             T   E+ S SLF+++K++++ N        +   +           +++      K  
Sbjct: 59  PGTLA-ELTSPSLFAERKVVVVRNAQDLPADTVKEFKAYFASPAEEITLVLAHAGGAKGK 117

Query: 126 TLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
            L   A K      ++C         +  +        +S + EA Q L+  +G D    
Sbjct: 118 GLLDAARKSGLAREVACPKMTKPADRLAFVRGEFRTQGRSATPEACQALVDAIGSDLREL 177

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L      +  I E  V              + +  ++G+   A+    + L++ 
Sbjct: 178 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 235

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+  +        +   +         K + +++ +R W  +
Sbjct: 236 VAPVLITSALAQGVRGIGKL--LGNRGGRPADLARELGMPP---WKIDRVRQQMRGWTPD 290

Query: 305 LVRETLHKIDHR 316
            V   +  +   
Sbjct: 291 GVATAMRAVAEA 302


>gi|161507343|ref|YP_001577297.1| putative DNA polymerase III, delta subunit [Lactobacillus
           helveticus DPC 4571]
 gi|260101775|ref|ZP_05752012.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|160348332|gb|ABX27006.1| putative DNA polymerase III, delta subunit [Lactobacillus
           helveticus DPC 4571]
 gi|260084419|gb|EEW68539.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|323466774|gb|ADX70461.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           helveticus H10]
 gi|328468544|gb|EGF39546.1| DNA polymerase III, delta subunit [Lactobacillus helveticus MTCC
           5463]
          Length = 328

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 128/315 (40%), Gaps = 37/315 (11%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
           KN   ++   + +G D  L   L N + K       D F  +   +++ + ++       
Sbjct: 8   KNTNNNNPHTLIWGGDDFLNDYLANSYIK------EDQFKDLEHVSVDCENDVLDELIAS 61

Query: 74  INSTSLFSKKKIILIENL--------STEKKVLDCLEEII--IKNICNHIIIIKSNE-IK 122
           +  +SLFS+ K+IL++N            KK +D L++I   +  + + ++I+ S + + 
Sbjct: 62  LTESSLFSENKLILVKNPFFLTEKVPKKLKKQIDDLQKIFDNLNELEDVVVIVASYDKLD 121

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG- 179
           +   L K   K  +V+   I  Y      +  +++  +     +I++ A Q+L+      
Sbjct: 122 RRKKLTKTVLKQFNVVEPTIRSYE-----VGAVVKSLIKTEGYTITQSALQLLIERSDQV 176

Query: 180 -DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D I S    QKL      D  ITE+ V   +  +    I  I+ A +      AI   D
Sbjct: 177 IDTILSN--YQKLKM-AANDNKITEKSVIQNVDLSLAQNIFAILEAALNKNYQEAIERLD 233

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             L        LL  F  + +L+  + I+ +    S  +I+++    + P +  +   +L
Sbjct: 234 NQLREGTNPIQLLAVFENQLELILVVKILAQRGR-SEVQIVKELG--VHPYRVKL---AL 287

Query: 299 RI-WNKNLVRETLHK 312
           R       + + L K
Sbjct: 288 RNKLTVPELEQLLQK 302


>gi|262371102|ref|ZP_06064424.1| DNA polymerase III subunit delta [Acinetobacter johnsonii SH046]
 gi|262313988|gb|EEY95033.1| DNA polymerase III subunit delta [Acinetobacter johnsonii SH046]
          Length = 329

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 93/201 (46%), Gaps = 11/201 (5%)

Query: 70  FWNEINSTSLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124
            +N +NS SLFS +  I +  N+  +   L  L+  I  N  N ++++     S  +K  
Sbjct: 61  VFNALNSLSLFSSQLAIEVHGNIKPDANALKLLKSYIQSNEQNLLLVVMPKQDSASLK-- 118

Query: 125 NTLRKIAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
               +  E     +A+ + YP ++  ++ +  + L      +S++A Q L  +   + +A
Sbjct: 119 TGFFQTVEANGVHVALTANYPRDRQQILSIEADKL---GVKLSQDAWQWLEQHHEHNLLA 175

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           ++N L ++S    E  LI   H+   + D       ++ +A ++G +  +I +  + +AS
Sbjct: 176 AKNSLMRVSDTFAEVELIQIDHLHACLQDQSRYSTFDLSDALLEGNLAQSIKIYQYLIAS 235

Query: 244 KMPSHALLHGFLQKFQLLEKI 264
             P   +L    ++ +LL ++
Sbjct: 236 GEPLSLILWSISKEMRLLMQL 256


>gi|262381735|ref|ZP_06074873.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_33B]
 gi|262296912|gb|EEY84842.1| DNA polymerase III, delta subunit [Bacteroides sp. 2_1_33B]
          Length = 340

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G +   I ++ +   K++       F+ ++L   +   +  +  N      + S
Sbjct: 22  PVYVLMGEEPFFIDQITDLLLKSVLEESERDFNQIILYGADT--DAISIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           + ++I++      + + + L   +   + + I++I      + +   L    +K      
Sbjct: 80  EYQLIVVREAQLVRDI-ELLSSYVKNPLSSTILVINYKYKTLDRRRALSVATDKNGILYE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   +      I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPSFITSLMQQRSIGIDPKAAQMLSDFLGNDLNRLNKELDKLAIILA 193

Query: 197 ED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + ++  I  +      E+I A     I  A  +A +F  +    P    L 
Sbjct: 194 EKASKRITPELIEQNIGISKEYNNFELIKALAMKDILKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECS 271
                F  L   +  K+ S
Sbjct: 254 VLFNYFSNLLICYYSKDRS 272


>gi|85860499|ref|YP_462701.1| DNA polymerase III subunit delta [Syntrophus aciditrophicus SB]
 gi|85723590|gb|ABC78533.1| DNA polymerase III, delta subunit [Syntrophus aciditrophicus SB]
          Length = 460

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 4/194 (2%)

Query: 88  IENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146
           ++  S      D LE I+       +++++ +  + K   L K   +   VL        
Sbjct: 179 LKGRSATGGGTDHLEAILRDGLPAGNVLLLTAESVDKRKKLFKTISELGRVLPFVVEKGE 238

Query: 147 KI---HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
                 LMD   + L    K +S  A ++L    G     S   L+KL +Y  E   I  
Sbjct: 239 ARQKNTLMDSARDLLATRGKRMSSGAWEVLGRKTGFQLRNSMAALEKLITYTGERKTIEV 298

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+++I  T    + ++  A  +  +  A+ +        + S  +L   +++ +LL  
Sbjct: 299 SDVEEVISRTREDKVFDLTAALAEKNLKGALSVLRSLREQGIHSLVILSMIVREMRLLLH 358

Query: 264 IHIIKECSNISFEK 277
              ++    +   +
Sbjct: 359 ARQLRNEGALPGYQ 372



 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG  +  I +   +    +        +L VL+  +  ++       + +  L  
Sbjct: 26  PCYLLYGDAEYEISDAFTKIIDALLSPEDQALNLFVLDGED--EDPERIGENLMTPPLLP 83

Query: 82  KKKIILIENL---STEKKVLDCLEEI 104
            +K++ +      S+ K + D ++ I
Sbjct: 84  GRKVVAVRRTQLFSSRKTLKDLVKRI 109


>gi|307330495|ref|ZP_07609637.1| DNA polymerase III, delta subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883830|gb|EFN14874.1| DNA polymerase III, delta subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 331

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 97/282 (34%), Gaps = 10/282 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ N        +  ++  +        ++++ +   K  
Sbjct: 55  PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKGYLGAPAEEITLVLLHAGAAKGK 113

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRATGRSATPEACQALVDAIGSDLREL 172

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L      +  I E  V              + +  ++G+   A+    + +++ 
Sbjct: 173 ASAVSQLV--ADVEGTIDEAIVARYYTGRAEASSFTVADRAVEGRAAEALEALRWAVSTG 230

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +P   +     Q  + + K+       N     + ++      P K + +++ +R W+ +
Sbjct: 231 VPPVLITSALAQGVRAIGKL--ASAPRNARPGDLARELGMP--PWKIDRVRQQMRGWSAD 286

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            V   L  +       +         + + ++ I + A    
Sbjct: 287 GVAVALRAVAEADAGVKGGGDDPAYALEKAVVTIVRAARAGR 328


>gi|61657453|emb|CAI44365.1| hypothetical protein [Thermotoga sp. SG1]
          Length = 329

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 28/258 (10%)

Query: 65  KNISTFW---NEINSTSLFSKKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKS-N 119
            +        + IN+ ++FS K ++ I +  + +        E+I     +  I ++S  
Sbjct: 40  DDPDKLNFLRSIINTRTIFSGKTVVDIIDFDSWRSQEQKRFLELIKSVPEDVHIFVRSQK 99

Query: 120 EIKKNNTLR--KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
              K   L   K  E    +              + IE+       +I+K+A Q+  + +
Sbjct: 100 STTKGVNLDLPKPWETDRWL--------------EWIEKRFRENGLNITKDALQLFFSKV 145

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G + +    E++KL +Y  E   I+ + V++++        +E   A  +GK   A  L 
Sbjct: 146 GTNDLLVEREIEKLKAYS-ETGNISAEDVEEVVFTYQTPGYDEFCFAVSEGKRKLAHALL 204

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNI 293
                S      +    +  F  L K+ ++             +I ++    + P     
Sbjct: 205 SQMWKS-TEPVVISAVLVNHFLDLFKLVVLVTRKRYYTWPDVSRISKELGMPV-PRAARF 262

Query: 294 LQESLRIWNKNLVRETLH 311
           L  + + W   ++   L+
Sbjct: 263 LGFAFKAWKFKVINHLLY 280


>gi|299144177|ref|ZP_07037257.1| DNA polymerase III, delta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518662|gb|EFI42401.1| DNA polymerase III, delta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 337

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 92/267 (34%), Gaps = 16/267 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            F+FYG ++ L+   I   KK       + F+L + +   + ++     +   +  + + 
Sbjct: 18  AFLFYGYERLLMDNAIEYVKKKYVSRGMETFNLSLYDGNNLTED--KLMSSCETLPVMND 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVLA 139
           K++I ++  +   + +       + NI   +I++   + N+I K  T  K   K    + 
Sbjct: 76  KRVIFVKGANAFSESVTKEFYKFLDNIGEFLILVFLDEDNKIDKTKTFYKYFSKNNRAIE 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA-------SRNELQKLS 192
                 +   + + IE  L+     ISK     L    G D           +NEL K  
Sbjct: 136 FP--KLSGKDIFNFIEGYLVRKGFDISKSDISYLSLKSGYDSKNLDMTLYDLKNELDK-M 192

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
               E   I  + +   +       I   ++A        ++M          P   +  
Sbjct: 193 LVLSEVKKIDREVIDRSMTQNADSNIFNFLDALCNKNTEKSLMEFKKLHLLNEPIERIFS 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII 279
             +++   L  ++   + +     + +
Sbjct: 253 MIVRQV-RLLIMYGDLKSNGYKDVQAM 278


>gi|56460057|ref|YP_155338.1| DNA polymerase III, delta subunit [Idiomarina loihiensis L2TR]
 gi|56179067|gb|AAV81789.1| DNA polymerase III, delta subunit [Idiomarina loihiensis L2TR]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 109/307 (35%), Gaps = 20/307 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +G D  L  + +   +K+++    D   +  L + +   +         S SLF 
Sbjct: 20  PVLLVFGDDLLLRNDALASIRKSLASD--DLERVHWLQSKDF--DWQQLSAGEQSMSLFG 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKFT 135
             +++ +E       +     L E       + I+++  + +KK        + +AE+  
Sbjct: 76  NMRLVELELPENKPGRDGSAALTEYAKNQADSEILVVIGDRLKKETQNSRWFKALAERGP 135

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            V   S  PD    L   I +     Q  ++    + L     G+ +A   EL K     
Sbjct: 136 LVRTQS--PDKSQ-LPAFIHQRAQRYQLILAAGVPEKLSDWFEGNLLALDQELSKWQLLS 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D +ITE  +K  I D     +  +  +  Q     A+   +  L  +   H L+    
Sbjct: 193 -NDGVITEDFLKSSIDDVSRFSVFALQESIQQQDFEGALHRLERLLDEENDFHRLIWILQ 251

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHK 312
           ++ QLL  +   K+    +        +  I P ++    +    L        ++ + +
Sbjct: 252 REVQLLTALQKAKQTQTDTNALF---RQFMIWPNQQPGYHQRANQLSQQTLLSAQQLIER 308

Query: 313 IDHRIHL 319
           I+  + L
Sbjct: 309 IEAALKL 315


>gi|301169641|emb|CBW29242.1| DNA polymerase III, delta subunit [Haemophilus influenzae 10810]
          Length = 344

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 116/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   ++       + + + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIHRLTYQTLYKIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   L +++
Sbjct: 315 ELANIERLTKQE 326


>gi|288819134|ref|YP_003433482.1| DNA polymerase III delta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288788534|dbj|BAI70281.1| DNA polymerase III delta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308752718|gb|ADO46201.1| DNA polymerase III, delta subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 329

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 16/278 (5%)

Query: 43  KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDC- 100
           K         + + +L   E+  +  +  +   S     KK+  +I+N     K V D  
Sbjct: 30  KAFIDKLSSLYHVKILWGDEL--DRKSLLSITESEMFIKKKRAFVIKNAEELFKGVKDGK 87

Query: 101 -LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD----NKIHLMDLIE 155
               +  K   + +  + S ++ K   L K  E   ++L+I    +    +K  + +L++
Sbjct: 88  YFTSLAKKLNNSSVFFVISEKLSKQ-QLEK--EPLKTLLSIGDLLEAKSPDKRKIRELVK 144

Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215
              +   K I   A   LL     + +  +NE+ KL  Y   D  IT + VK I      
Sbjct: 145 NRFVKEGKQIDDSALDYLLEITSYNLMELKNEVDKLILYA--DERITLEDVKAICISNIE 202

Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
             + + INA     +  ++      +   +P+  +    +     L     + E +    
Sbjct: 203 YTVFDFINAFYTKDLEKSLNSLSSLVRWGVPALQIQAVLVNYALKLFVCAYLVE-NGYDI 261

Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
           +K   +      P  ++  +  L  +    ++  +H++
Sbjct: 262 DKAFSELGIT-NPYLKHSFKTYLEKFKLKDLKNLIHRL 298


>gi|229587369|ref|YP_002860407.1| DNA polymerase III, delta subunit superfamily [Clostridium
           botulinum Ba4 str. 657]
 gi|229260352|gb|ACQ51389.1| DNA polymerase III, delta subunit superfamily [Clostridium
           botulinum Ba4 str. 657]
          Length = 327

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 33  LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
           LI + +  F K   +      +   ++  ++   I++  + F   IN+      K++IL+
Sbjct: 17  LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVILM 75

Query: 89  EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139
           E     +   K ++ L + +        + + S        I KN+ ++K  +    ++ 
Sbjct: 76  ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D   ++  +          +I+ EA  + +       IA   E++KL   CL   
Sbjct: 136 GEFQSD---YVKRVCNSIFARHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + + + I   +   I ++ ++  +  +          L       ++ +  L   +
Sbjct: 190 TLNIEDIINCISSYNDDDIFDLTDSISKKDVNGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249

Query: 260 LLEKIHI 266
           +L++  +
Sbjct: 250 MLQEARL 256


>gi|332662293|ref|YP_004445081.1| DNA polymerase III subunit delta [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331107|gb|AEE48208.1| DNA polymerase III, delta subunit [Haliscomenobacter hydrossis DSM
           1100]
          Length = 335

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 126/326 (38%), Gaps = 18/326 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +   I  + +  +  +       F+  ++   ++  +     +      + +
Sbjct: 17  PLYFLHGDEAYFIDVISDYIENEVLNEGERAFNQTIVYGKDV--DHLAIVDTARRYPMMA 74

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++++++     K + D L+  + K + + I++I  K+ +   N+   K      + + 
Sbjct: 75  QHQVLILKEAQDMKTLKD-LQTYVEKPLDSTILVICHKNGKYNLNSKFGKAI--QANGVV 131

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  + + I++ L   + SI  EA  ++   LG +     NEL K++       
Sbjct: 132 FESKRLYENQIPNWIQDYLRNKKLSIRPEASALVAEYLGTELSRVANELDKMAINLAPGT 191

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQK 257
            IT +H+++ I  +    + E+  A  Q  +  A  +A++F A+  + P   ++      
Sbjct: 192 EITTKHIEEQIGISKDYNVFELQKALGQRDVLKANRIANYFAANPKRNPITVIISSLYGF 251

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           F  +  ++   + S     + ++              +E+ R +N++     +  +    
Sbjct: 252 FSKVYLLNFFLQASEKEQLEALE-LRSAFFLKD---YREATRYFNRSRAERAIALLREYD 307

Query: 318 HLAR-----KKKYLEKNIIFQTILYI 338
             ++          E +++ + I  +
Sbjct: 308 LKSKGVNYNSTGKPEVDLLREMIYLL 333


>gi|281412241|ref|YP_003346320.1| DNA polymerase III, delta subunit [Thermotoga naphthophila RKU-10]
 gi|281373344|gb|ADA66906.1| DNA polymerase III, delta subunit [Thermotoga naphthophila RKU-10]
          Length = 324

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 36/293 (12%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G          K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 7   TGTAETQKEGLIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIK-KNNTLR--KIAEKFTSVLAISCYPDN 146
               K      L E++     +  I I+S +   K   L   K  E    +         
Sbjct: 64  FDEWKAQEQKRLVELLKNVPEDVHIFIRSQKTGGKGVALELPKTWETDKWL--------- 114

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
                + IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V
Sbjct: 115 -----EWIEKRFRENDLIIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDRKITVEDV 168

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++        ++   A  +GK   A  L             +       F  L KI +
Sbjct: 169 EEVVFTYQTPGYDDFCFAVSEGKRKLAHTLLSQLWK-NTEPVVIATVLANHFLDLFKILV 227

Query: 267 IKECSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
           +             ++ ++ E  +       +   L    + W   ++   L+
Sbjct: 228 LVTKKRYYTWHDVSRVSKELEIPV-----PRVARFLGFSFKTWKFKVINHLLY 275


>gi|290960524|ref|YP_003491706.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260650050|emb|CBG73166.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 332

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 11/282 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ N        +  ++  +        ++++ +   K  
Sbjct: 59  PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 117

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +     +  +S + EA Q L+  +G D    
Sbjct: 118 ALLDAARKAGAREVACPKMTKPGDRLAF-VRGEFRMLGRSATPEACQALVDAIGSDLREL 176

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
                +L      +  I E  V             E+ +  ++G+   A+    + LA+ 
Sbjct: 177 AAAASQLV--ADVEGTIDEAVVGRYYRGRAEASSFEVADRAVEGRAAEALEALRWSLATG 234

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +        Q +  I  +          + ++      P K + +++ +R W  +
Sbjct: 235 VAPVLITSALA---QGVRAIGKLSSARGGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 289

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            V   L  +       +      +  + + ++ IA+ A    
Sbjct: 290 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVVIARAARSRR 331


>gi|222099480|ref|YP_002534048.1| hypothetical protein CTN_0506 [Thermotoga neapolitana DSM 4359]
 gi|61657316|emb|CAI44236.1| hypothetical protein [Thermotoga neapolitana]
 gi|61657338|emb|CAI44257.1| hypothetical protein [Thermotoga neapolitana]
 gi|221571870|gb|ACM22682.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 324

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 26/295 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V    G+ +    ELI +  K       +    + ++  +  K ++   + IN+ ++FS
Sbjct: 2   PVTFLTGASETKKEELIKKLLK------DEKAEYIRIHPDDPDK-LNFLRSIINTRTIFS 54

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            K ++ I +  + +        E++     +  I +           R        V   
Sbjct: 55  GKTVVDIIDFDSWRSQEQKRFLELVKNVPEDVHIFV-----------RSQKSTAKGVNLD 103

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
              P      ++ IE+        I+K+A Q+  + +G + +    E++KL +Y  E   
Sbjct: 104 LPKPWETDKWLEWIEKRFRESGLKITKDALQLFFSKVGTNDLLIEREIEKLKAYS-ETGN 162

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+ + V++++        +E   A  +GK   A  L             +    +  F  
Sbjct: 163 ISAEDVEEVVFTYQSPGYDEFCFAVSEGKRRLAHALLSQMWK-NTEPVVISAVLVNHFLD 221

Query: 261 LEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
           L K+ ++             KI ++    + P     L  + + W   ++   L+
Sbjct: 222 LFKLVVLVTRKRYYTWPDISKISKELGMPV-PRVARFLGFAFKAWKFKVINHLLY 275


>gi|303236498|ref|ZP_07323085.1| DNA polymerase III, delta subunit [Prevotella disiens FB035-09AN]
 gi|302483349|gb|EFL46357.1| DNA polymerase III, delta subunit [Prevotella disiens FB035-09AN]
          Length = 341

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 100/264 (37%), Gaps = 17/264 (6%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ +++  F             +++  G +   I ++ +   +N+       F+L V   
Sbjct: 13  MSDLKARNF-----------SPIYLLMGEESYYIDKISDYIAENVLTPEEQDFNLNVCFG 61

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++        +      + +++++++++       + D LE+ +       +++     
Sbjct: 62  ADVSA--VQVTDMAKRFPMMAERQVVIVKEAQNIHSL-DALEKYLKNPAKTTVLVWCHKN 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
            K +   + +     + +        +  L   +++ L+  + +I  +A Q++  ++G D
Sbjct: 119 GKIDARKKVVGLAQANGVVFESRKIKEYQLAGFMQKYLVTKKIAIDPKAAQMIADHVGAD 178

Query: 181 RIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
                +EL K++      +  IT + V+  I  +      E+ ++ +   I+ A  + ++
Sbjct: 179 LNRLTSELDKVALSLPENNKKITPEIVEKEIGVSKDFNTFELRDSIVHRNIFKANQIVNY 238

Query: 240 FLASKMPSHA--LLHGFLQKFQLL 261
           F  +         L      FQ L
Sbjct: 239 FDKNPKAGSLYSFLPLLFSYFQNL 262


>gi|15642955|ref|NP_227996.1| hypothetical protein TM0181 [Thermotoga maritima MSB8]
 gi|4980677|gb|AAD35274.1|AE001703_3 hypothetical protein TM_0181 [Thermotoga maritima MSB8]
          Length = 324

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN 90
            G       +  K +    +  +  +     +    I +    + + ++FS K II I N
Sbjct: 7   TGTAETQKEELIKKLLKDGNVEYIRIHPEDPDKIDFIRSL---LRTKTIFSNKTIIDIVN 63

Query: 91  LSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
               K      L E++     +  I I           R        V      P     
Sbjct: 64  FDEWKAQEQKRLVELLKNVPEDVHIFI-----------RSQKTGGKGVALELPKPWETDK 112

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
            ++ IE+        I K+A Q+  + +G + +    E++KL +Y  ED  IT + V+++
Sbjct: 113 WLEWIEKRFRENGLLIDKDALQLFFSKVGTNDLIIEREIEKLKAYS-EDRKITVEDVEEV 171

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +        ++   A  +GK   A  L          S  +       F  L KI ++  
Sbjct: 172 VFTYQTPGYDDFCFAVSEGKRKLAHSLLSQLWK-TTESVVIATVLANHFLDLFKILVLVT 230

Query: 270 CSN----ISFEKIIQKTEKNIIPMKRNILQESL----RIWNKNLVRETLH 311
                      ++ ++    +       +   L    + W   ++   L+
Sbjct: 231 KKRYYTWPDVSRVSKELGIPV-----PRVARFLGFSFKTWKFKVMNHLLY 275


>gi|218961343|ref|YP_001741118.1| putative DNA polymerase III, delta subunit (holA-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730000|emb|CAO80912.1| putative DNA polymerase III, delta subunit (holA-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 349

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 129/334 (38%), Gaps = 13/334 (3%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-DPFSLVVLNALEIQKNI 67
           F    T +       ++  G+D  L+  +++  +  +      D F +      +  K+ 
Sbjct: 22  FALDFTADKVRLGSSYLLIGTDSYLVDRVLDSIRAKLKKKEKVDTFII----YGDEVKSP 77

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
               + +++ S+FS  K+I+I+N  + K K L  L +          + I + +    + 
Sbjct: 78  E-LADLLDTYSIFSAAKLIIIKNAESLKTKELSTLADYFSSPSEIQSLAIVTEKADARHE 136

Query: 127 LRKIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             K  +  T ++      Y      +   ++++L    K ++ +A +  L  +  D   +
Sbjct: 137 NWKKIKAGTKLITCDPPPY---GGAIRTWLDKALKDINKKMTDKAIEEFLNRIELDYYNA 193

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            NEL KL     +   ITE+ +   +  T    + +   A  + +   AI   +  L + 
Sbjct: 194 ANELTKLDLLTRDRTTITEEDIMQSLGTTRSGTLIDFYRALGRKQAKQAIEAMEKMLFAD 253

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                +L    + +  + KI ++ + ++I+  +I+ K   +  P +R    +  R +N N
Sbjct: 254 WKPLQILFQLTRFYFNIWKI-LLLKKAHITDNEIVSKYITDFHPNQRREFLDLSRYYNIN 312

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
            + +    +       +      + ++   +L I
Sbjct: 313 ALEKIFALLLETDQQFKLTVAEPQILLCNCLLKI 346


>gi|260581749|ref|ZP_05849546.1| DNA polymerase III, delta subunit [Haemophilus influenzae NT127]
 gi|260095342|gb|EEW79233.1| DNA polymerase III, delta subunit [Haemophilus influenzae NT127]
          Length = 344

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 119/318 (37%), Gaps = 26/318 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133
            K+I+ +        +L   L+E+I     + ++I++         L K+ EK       
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKVLEKQTWFITL 129

Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + I+C      +L   ++            EA Q L  +   + +A +  LQ 
Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      D  +    V  ++  + +    + I+A + GK   A  +     A  +    L
Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248

Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305
           L    ++   L ++      I     +S ++I  + ++  I   +R +   +++      
Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLSTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308

Query: 306 VRETLHKIDHRIHLARKK 323
           + E + ++ +   LA+++
Sbjct: 309 LYEIIQELANIERLAKQE 326


>gi|307719871|ref|YP_003875403.1| hypothetical protein STHERM_c22020 [Spirochaeta thermophila DSM
           6192]
 gi|306533596|gb|ADN03130.1| hypothetical protein STHERM_c22020 [Spirochaeta thermophila DSM
           6192]
          Length = 326

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 121/330 (36%), Gaps = 18/330 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI---NSTSL 79
           +F   G + GL  E ++  K++++  Y        +    +     +F + +    + SL
Sbjct: 7   IFFLLGPETGLKEEYLHTLKQDLTKAYG------AIEEEHLYAFEDSFSDALPRLQNASL 60

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F +  ++LI N          L  +  +    +  ++I S+EI+    L K+A   T  +
Sbjct: 61  FGEHTLLLIHNAERLSTQDQNLLALYAQTPSPSSTLVILSDEIRLPQRLEKLASHHTREV 120

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
                 D K     +I ++L    +SI+ EA  + L  +     A   E  +L+ +  E 
Sbjct: 121 FWELREDQK---ARMIHQTLKRSGRSIASEAVDLFLQMVSPVSSALVEEASRLAFFFPEG 177

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             ITE+ ++  +  +    +  +     +  I  A+      L+     H ++ G L +F
Sbjct: 178 HTITEKDIEQFLFHSREENVFTLFAHLARRDIEAALECTSALLSQSEAVHQIIGGLLWQF 237

Query: 259 QLLEK-IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
           + L   + ++ E                +   +   ++ +LR +     +  + ++    
Sbjct: 238 RRLLTVMRLLGERYGREEAFREAGIR-GMGFKRT--METALRNYTLEETQRAIVELVSCD 294

Query: 318 HLARK-KKYLEKNIIFQTILYIAQTACKNN 346
              R  ++ L   I    +  I +      
Sbjct: 295 EQVRLHRRELHPLIFTLALHRIVRHPRAAR 324


>gi|311747249|ref|ZP_07721034.1| DNA polymerase III, delta subunit [Algoriphagus sp. PR1]
 gi|126578960|gb|EAZ83124.1| DNA polymerase III, delta subunit [Algoriphagus sp. PR1]
          Length = 343

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 105/306 (34%), Gaps = 18/306 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++    +      +   F+ VVL   +   ++ T  N      + +
Sbjct: 22  PIYFLDGDEPFYIDQITEIIENTAIAEHERGFNQVVLYGKD--SDMGTIINNARKFPMMA 79

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKF 134
            +++++++   +     K+    L     +N     I++ +++ KK    + L K  E  
Sbjct: 80  DRQVVIVKEAQSLTDLGKEEAQKLLIGYAQNPLPSTILVLAHKYKKFDRRSALSK--ELQ 137

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + + ++        L + + +        I   A Q L  ++G +     NE+ K+   
Sbjct: 138 KNAIYVTSEKIKDYKLTEWVLQYFKDIGHDIEPRAAQFLAESIGNNLEVMTNEVGKMLIN 197

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHG 253
             E    T + +   I         E++ A        +  + ++F+ + K      L  
Sbjct: 198 FKEPTKFTVKDISKFIGINKDYNNFELLKAIGMKDPIKSNKIVNYFIQNPKAHPVIPLFA 257

Query: 254 FL-QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
            +   F  L  IH +   S+     +I         + +  +Q + R +    V +    
Sbjct: 258 LMYNYFTKLAMIHEVGGGSDSQVASLIG--VPP--FVAKEYMQSA-RNYKLGKVIDVFEY 312

Query: 313 IDHRIH 318
           +     
Sbjct: 313 LKEADL 318


>gi|226307256|ref|YP_002767216.1| DNA polymerase III delta subunit [Rhodococcus erythropolis PR4]
 gi|229493143|ref|ZP_04386935.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121]
 gi|226186373|dbj|BAH34477.1| putative DNA polymerase III delta subunit [Rhodococcus erythropolis
           PR4]
 gi|229319874|gb|EEN85703.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121]
          Length = 325

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 99/306 (32%), Gaps = 16/306 (5%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH---DPFSLVVLNALEIQKNISTFW 71
            N      + +  G D+ LI   ++Q  + +            +  + A +         
Sbjct: 2   SNPSGVDPLHLVLGDDEFLIDRTVSQLIRAVRGDRGQGISDLPVTKMRAGDTNAPE---L 58

Query: 72  NEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
            E+ S SLF++ ++I++E+ +   K  +  + E   +     ++I+  +   +   L   
Sbjct: 59  AELLSPSLFAEDRVIVLESAAEAGKDAVALVLEAAREPAEGVVLIVVHSGGGRAKALAPA 118

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            EK  + +  +C   NK  L+D +          ++ +A   ++ ++G +     +   +
Sbjct: 119 LEKLGATVH-NCGKLNKSQLVDFVRGEFRTADVRVAPDAIAAMIESVGSNLRELASACSQ 177

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       I    V         +   ++ +  I G    A+    +          L
Sbjct: 178 LAADTGGK--IDVDAVHKYYSGKAEVSGFDVADKVIVGDTRGALEALRWADQIGTAHVLL 235

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309
                     + K+       +    ++             +  + + +  W+   +   
Sbjct: 236 ADALADAVHTIAKVGPFARGGD--PFRLASDLGMPP--WKVKKAI-KEVGGWDPTSIGAA 290

Query: 310 LHKIDH 315
           +  +  
Sbjct: 291 MQIVAA 296


>gi|154492158|ref|ZP_02031784.1| hypothetical protein PARMER_01790 [Parabacteroides merdae ATCC
           43184]
 gi|154087383|gb|EDN86428.1| hypothetical protein PARMER_01790 [Parabacteroides merdae ATCC
           43184]
          Length = 340

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 17/259 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G +   + ++ +   +N+       F+ +++   +   + ++  N      + S
Sbjct: 22  PVYIMMGDEPFFMDQITDLLLENVLEESERDFNQIIMYGADT--DAASIINAARRFPMMS 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFT---S 136
           K +++++      + + + L   +   + + +++I      + +   L    +K      
Sbjct: 80  KYQLVVVREAQLIRDI-ELLSNYVKNPLMSTVLVINYKYKNLDRRKALASATDKTGVLFE 138

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I  Y      +   I   + +    I  +A Q+L   LG D      EL KL+    
Sbjct: 139 SKKIPDY-----KMPAFIASFMQMRSIGIDGKASQMLSDFLGNDLSRLSKELDKLALILP 193

Query: 197 EDI--LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
           E     IT + V+  I  +      E+I A     +  A  +A +F  +    P    L 
Sbjct: 194 EKGAKRITPELVEQNIGISKEYNNFELIKALAMKDVLKANRIAQYFEKNPKSNPIQMTLP 253

Query: 253 GFLQKFQLLEKIHIIKECS 271
                F  L   +  K+ S
Sbjct: 254 VLFNYFSNLLICYYTKDRS 272


>gi|225016333|ref|ZP_03705525.1| hypothetical protein CLOSTMETH_00236 [Clostridium methylpentosum
           DSM 5476]
 gi|224950876|gb|EEG32085.1| hypothetical protein CLOSTMETH_00236 [Clostridium methylpentosum
           DSM 5476]
          Length = 350

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 133/363 (36%), Gaps = 34/363 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDK-------GLIFELINQFKKNISITYHDPF 53
           M TI    F++   +  F    +++ YG +         L+ +     +K +++     F
Sbjct: 1   MPTINDQAFVKSIRQGEFA--NLYMLYGKETYMLEGCLKLLLDRAVTVQKMLNLNR---F 55

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEK---KVLDCLEEIIIKNIC 110
                   EI+       N   +  + + ++ +++ +L+ EK      + L+ I      
Sbjct: 56  DGAKCTLEEIE-------NVTETLPVLAPRRCVVVSDLNVEKLGKNQYEQLKGIACNLPE 108

Query: 111 NHIIIIKSNE----IKKNNTLRKIAE-KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI 165
             ++++        ++K+   R  +     + + +   P  +  L  ++ +        +
Sbjct: 109 TTVLVLAYPNTEINLRKSARYRAFSTLVSKNGVLVEFSPKTQSELSKVLAKRAAKQGAEL 168

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
           +  A + L    G +      EL KL++Y  +D +I  + V +++  +      ++  A 
Sbjct: 169 TPAACRRLTDCCGTELSRLTVELDKLAAYAGQDGVIGPEMVDELVVPSVDSSSFDLARAI 228

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-K 284
           +QG+   A  L       +  +  +L      F  + +     + +    + I      K
Sbjct: 229 LQGRDQQAFSLLGELFDQRQEAITILGALNMSFIDIYRAKC-AQAAGKDADAITSVFSYK 287

Query: 285 NIIPMKRNILQESLRIWNKNLVRETLHKIDHR---IHLARK-KKYLEKNIIFQTILYIAQ 340
                 RN ++++   ++   ++  L  +      +  +R   + + +  I + +L  AQ
Sbjct: 288 GKEFRMRNSMRDA-SRFSPARIKRCLGILMEADVKLKSSRADNRIILETAIARMMLVDAQ 346

Query: 341 TAC 343
            A 
Sbjct: 347 EAR 349


>gi|332799040|ref|YP_004460539.1| DNA polymerase III subunit delta [Tepidanaerobacter sp. Re1]
 gi|332696775|gb|AEE91232.1| DNA polymerase III, delta subunit [Tepidanaerobacter sp. Re1]
          Length = 314

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 122/299 (40%), Gaps = 16/299 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEINSTSLF 80
            + +F+G +K LI E + + K+ I     +  + + L+    I+++I       N   + 
Sbjct: 3   NLILFFGEEKLLIKEEVAKIKQKIVPKNLEAINFIPLDGKTVIEEDILK---ACNIVPMM 59

Query: 81  SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           S KK++++ +     S + K  D     +     +  ++  + +  K   + K+  K   
Sbjct: 60  SAKKLVVVYDARFFESEKTKQEDYFLNELEIIPDHTYLVFTATKADKRRKIFKMI-KSKG 118

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           ++       +       +++ + +  KS+  +     +A    D   + +EL+K++++  
Sbjct: 119 IVR-EFNTPSLKDKALWVQQRIKLYGKSMDLKT-AYFIAEYTADLYQTDSELRKIAAFLA 176

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
           E   + + ++ DI   +    I E+++     K   A+ + +  L        +L+   +
Sbjct: 177 EKQTVEQNNLSDIFYKSLEGNIFEMMDCIGSKKSTEAVKIINRLLEQGEKGIVILYMISK 236

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
               L  +  +     +SF++I +K+  +   +++ I  +    +  + ++ +L     
Sbjct: 237 HVMNLITVKSL---QGLSFQEITEKSGLHPFVIRKAI--KQSENFTLDELKRSLKLCQD 290


>gi|160872039|ref|ZP_02062171.1| DNA polymerase III, delta subunit [Rickettsiella grylli]
 gi|159120838|gb|EDP46176.1| DNA polymerase III, delta subunit [Rickettsiella grylli]
          Length = 353

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 86/221 (38%), Gaps = 2/221 (0%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICN 111
           F+   +   + Q N +     +N+  LFSKK+ + +  +    +++   L +       +
Sbjct: 47  FTCRQVFYADKQFNSALLVANMNNYGLFSKKQFLELHLSQGFSEELTKALTQYAQSPPHH 106

Query: 112 HIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
             ++I + +++         +K     L +  +P  +  L+  I E +      I K A 
Sbjct: 107 QCLLIITGKLEYRLQQTAWFKKIDKIGLIVPLWPLQRPQLILWITERVHAYGLKIEKAAI 166

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             L+    G+ +A+   ++KL  Y  ++ LIT + ++  +C        ++ +A + G  
Sbjct: 167 DYLMYATEGNLLATAQAIEKLRLYVDKNNLITIECLEQTLCHNVRFDPFKLTDAALTGNA 226

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
              + +        +    +L    ++ +LL  +       
Sbjct: 227 KRCLRILMHLEEDGIEPLFILWALSRECRLLASLAFELNQG 267


>gi|311743008|ref|ZP_07716816.1| DNA-directed DNA polymerase III delta subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313688|gb|EFQ83597.1| DNA-directed DNA polymerase III delta subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 327

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 109/329 (33%), Gaps = 18/329 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLF 80
            V +  G+ + L      + ++    T     +   +                + S SLF
Sbjct: 7   KVLLISGNAEFL----AERTRRRAVDTIRSQQADCEIAESSAAGLGPGELAG-LTSPSLF 61

Query: 81  SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFT 135
           S    +++ +L    E+   + L  +   +    ++++     K       LRK      
Sbjct: 62  SSASALVLTDLQDLPEQPQAELLAYVADPSPDIAVVLVHGGGAKGRGLLDKLRKHPAVTE 121

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             +    Y      ++  + E L      I ++A  +L+ ++G D  +      +L +  
Sbjct: 122 VKVEAPKYE---RDVVRWLREELRALGAVIDEQAATVLVTSVGQDLRSLAGAADQLIASV 178

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                I+E+ V+        +   E+ +AT+ G+I  AI  A +   +K+    +     
Sbjct: 179 PPGSEISEEVVRRYFGGRAEVRGYEVADATLDGRIDIAIERARWAATAKVAPVLITSAMA 238

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
              + L K+         +                R  L+  L+ W+ + +R+ L  +  
Sbjct: 239 AGLRQLVKLATAPPGLRDAELAAHVGAPP---FKLR-ALRGQLQTWDPDGLRQALDHVAQ 294

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACK 344
                +         + + +L IA    +
Sbjct: 295 ADLDVKGASADPAYAVERMVLRIAALRRR 323


>gi|239979393|ref|ZP_04701917.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 329

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 14/292 (4%)

Query: 59  NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113
           +  ++  +     T   E+ S SLF+++K++++ N        +  ++  +   +    +
Sbjct: 44  DVRDLTSDQLQPGTLA-ELTSPSLFAERKVVVVRNAQDLSADSVKDVKAYLGAPVEEITL 102

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +++ +   K    L    +     +A          L   +        ++ + EA Q L
Sbjct: 103 VLLHAGGAKGKGLLDAARKAGAREVACPKMTKPADRLAF-VRSEFRALGRTATPEASQTL 161

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           +  +G D     + + +L+     +  I E  V              + +  ++G+   A
Sbjct: 162 VDAIGSDLRELASAVTQLA--ADVEGNIDEAVVGRYYTGRAEASSFTVADRAVEGRTAEA 219

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +    + L++ +    +        Q +  I  +          + ++      P K + 
Sbjct: 220 LEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 274

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           +++ +R W  + V   L  +       +      +  + + ++ IA  A   
Sbjct: 275 VRQQMRGWTPDGVATALRAVALADAGVKGGGDDPEYALEKAVVAIATAARAR 326


>gi|319947363|ref|ZP_08021596.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           australis ATCC 700641]
 gi|319746605|gb|EFV98865.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           australis ATCC 700641]
          Length = 345

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 24/273 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G    +  Q  K +     D     F +      E++ +       + S 
Sbjct: 17  PILVLSGDDIGQFEWMKEQLLKKVGYNSSDLNYSYFDMKETAYAEVELD-------LVSL 69

Query: 78  SLFSKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +KI++++   +++T KK       L   E+ +   +    +I+ +  ++     +
Sbjct: 70  PFFADEKIVILDHFIDVTTAKKRYLTDDELQSFEDYLAAPLETTRLIVIAEGKLDSKRRI 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   +L  +     +  L     E +     +I  +A   LL   G D    +  
Sbjct: 130 VKLLKRDAQLLEAT--ELKEQELRAHFTEEIKSLGLAIDSQAFDQLLIKSGFDFSEIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L+ L +Y      IT   +++ I  T    + ++I   ++ +I +A  L           
Sbjct: 188 LEFLKTYK-GASSITISDIEEAIPKTLQDNLFDLIQMILKKQIDSARSLVKDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
             LL   L +F++  ++ ++K+      + +  
Sbjct: 247 IKLLAILLSQFRIFTQVKLLKQEGRTEPQIVSD 279


>gi|68249509|ref|YP_248621.1| DNA polymerase III subunit delta [Haemophilus influenzae 86-028NP]
 gi|68057708|gb|AAX87961.1| DNA polymerase III, delta subunit [Haemophilus influenzae 86-028NP]
          Length = 344

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 117/312 (37%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   L +++
Sbjct: 315 ELANIERLTKQE 326


>gi|227504491|ref|ZP_03934540.1| DNA polymerase III delta subunit [Corynebacterium striatum ATCC
           6940]
 gi|227198908|gb|EEI78956.1| DNA polymerase III delta subunit [Corynebacterium striatum ATCC
           6940]
          Length = 315

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 111/333 (33%), Gaps = 33/333 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +  G D+ L  E      +  +        +V L A E+ +          S SLF  
Sbjct: 4   VHLILGDDEFL-TERARLSIQKAAGEG---VEVVRLKASEVSEGEIAM---ATSPSLFGD 56

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICNHIII----IKSNEIKKN-------NTLRKI 130
            ++I+I ++    K++   L   +        ++    + +  +K           LRK+
Sbjct: 57  NRVIVISDVEKVGKELTQVLLTAVADPGPGMTLVLIYTVTAKTLKGKKKPPEIVAKLRKV 116

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E      A S YP+    L               + +  Q +L  +G D     + + +
Sbjct: 117 GEVHE---AFSLYPNE---LGSWATREFASHGVRPTPDVVQAVLDGVGSDLRELASAISQ 170

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  +T + V +       +   +I +A + G++  A+      L       A+
Sbjct: 171 LVFDT--NGNVTREAVHNYYVGIAEVANWDIADAAVAGRVEAAVSTCRRALQLGASPVAI 228

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                 K   + +++  +   +             ++ M + +     R W+++ V + +
Sbjct: 229 AAALANKVGAIARLYSAR--GDQYSLAKDTGLAPYVVKMTQPVA----RRWSEDNVNKAV 282

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             +       + +   E   I   +  +A+ A 
Sbjct: 283 ILMAELDAAVKGQGGDEDFAIEAAVRRVAELAR 315


>gi|302206693|gb|ADL11035.1| DNA polymerase III delta subunit [Corynebacterium
           pseudotuberculosis C231]
          Length = 324

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 102/292 (34%), Gaps = 18/292 (6%)

Query: 22  FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V +  G D+ L  E    +   +I     D  ++  L A E+ +  S   + + S SLF
Sbjct: 7   PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 62

Query: 81  SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            + +II++     + ++     L   +      ++II+ S   ++  T+ K  +      
Sbjct: 63  GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHA 122

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A    P  +   +  +           + +    LL  +G +     + + +L      +
Sbjct: 123 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 177

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   V+D       +   ++ +    G+   A+  A   L   +   AL      K 
Sbjct: 178 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 237

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309
             + +++  +    I    + ++      +  K   +  +   WN + + + 
Sbjct: 238 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 284


>gi|295092104|emb|CBK78211.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 156

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           +EL+KL SY +   ++T + V+ +        I E++NA + GK   A+ L +  L  K 
Sbjct: 6   SELEKLISYTMGREVVTAEDVEAVTTVQVSNKIFEMVNAIVTGKTRAAMDLYEDLLTLKE 65

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           P   +L    ++F  L     + +          +        +   ++ ++ R + +  
Sbjct: 66  PPMRILFLIARQFNQLFLTKELLDSGADRAAIASKLKVPP--FVAGKLMPQA-RSFTREQ 122

Query: 306 VR---ETLHKIDHRIHLARKKKYLEKNI 330
           +    E   + +  +   R    +   +
Sbjct: 123 IAGCVEACVEAEEAVKTGRLGDRMAVEL 150


>gi|168184362|ref|ZP_02619026.1| FAD/FMN-containing dehydrogenase [Clostridium botulinum Bf]
 gi|182672498|gb|EDT84459.1| FAD/FMN-containing dehydrogenase [Clostridium botulinum Bf]
          Length = 327

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 33  LIFELINQFKKNISIT----YHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
           LI + +  F K   +      +   ++  ++   I++  + F   IN+      K++I +
Sbjct: 17  LITDNVTAFNKTKKLLCSQIINPQLNINKMDFKMIEEE-NEFKKIINTIPFMDSKRVISM 75

Query: 89  EN---LSTEKKVLDCLEEIIIKNICNHIIIIKS------NEIKKNNTLRKIAEKFTSVLA 139
           E     +   K ++ L + +        + + S        I KN+ ++K  +    ++ 
Sbjct: 76  ELPLFKTGVAKKINGLLKALKSIPDETNVFLYSYIKDKRTNINKNSEIKKFIKNDFFIIN 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D   ++  +          +I+ EA  + +       IA   E++KL   CL   
Sbjct: 136 GEFQSD---YVKKVCNSIFARHNTTITNEALDLFVNKTLNIDIAL-QEIKKLL--CLNKN 189

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + + + I   +   I ++ ++  +  I          L       ++ +  L   +
Sbjct: 190 TLDIEDIINCISSYNDDDIFDLTDSISKKDINGYFNTLKNLLDKGEKPVSVFYTLLNHIK 249

Query: 260 LLEKIHI 266
           +L++  +
Sbjct: 250 MLQEARL 256


>gi|313203213|ref|YP_004041870.1| DNA polymerase iii, delta subunit [Paludibacter propionicigenes
           WB4]
 gi|312442529|gb|ADQ78885.1| DNA polymerase III, delta subunit [Paludibacter propionicigenes
           WB4]
          Length = 338

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 104/306 (33%), Gaps = 24/306 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I  + +  +KN+       F + +L   +I  +I+T  N      +  
Sbjct: 22  PVYFLMGEEPYYIDVISDFIQKNVLDETEREFDMTILYGKDI--DITTVINAAKRYPMMG 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
             ++++I+     K   D     +   + + I+++  K     K    +K  ++   V  
Sbjct: 80  AYQVLIIKEAQLIKDW-DNFVHYLSNPLKSTILVLCYKYGMPDKR---KKWFQEVLKVAT 135

Query: 140 ISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           +  Y      L D      I +       +I ++A  ++   LG D     NEL KL   
Sbjct: 136 V--Y--ESAKLRDYEVGSWITKYCKSKNVAIDEKAVAMIAEFLGTDLSKLVNELDKLLLT 191

Query: 195 C-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHALL 251
              +   +T + V+  I  +    + E+  A I   +     +  +F  +K   P   +L
Sbjct: 192 KPADMQRLTPELVEKNIGISKDFNVFELQAALINKDVVKVNRIIRYFAENKKANPMVMVL 251

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETL 310
               + F  L   H + +    S   +  +               +S   W    +   +
Sbjct: 252 SQLFKFFSDLMIYHYLSD---KSQGAVASELRINPYFVKDYQKAAQSFGAWKTMNIISWI 308

Query: 311 HKIDHR 316
              D R
Sbjct: 309 RDTDAR 314


>gi|145632301|ref|ZP_01788036.1| DNA polymerase III subunit delta [Haemophilus influenzae 3655]
 gi|229844022|ref|ZP_04464163.1| DNA polymerase III subunit delta [Haemophilus influenzae 6P18H1]
 gi|144987208|gb|EDJ93738.1| DNA polymerase III subunit delta [Haemophilus influenzae 3655]
 gi|229813016|gb|EEP48704.1| DNA polymerase III subunit delta [Haemophilus influenzae 6P18H1]
          Length = 344

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 118/318 (37%), Gaps = 26/318 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTLCQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133
            K+I+ +        +L   L+E+I     + ++I++         L K+ EK       
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKVLEKQTWFITL 129

Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + I+C      +L   ++            EA Q L  +   + +A +  LQ 
Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      D  +    V  ++  + +    + I+A + GK   A  +     A  +    L
Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248

Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305
           L    ++   L ++      I     +  ++I  + ++  I   +R +   +++      
Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308

Query: 306 VRETLHKIDHRIHLARKK 323
           + E + ++ +   LA+++
Sbjct: 309 LYEIIQELANIERLAKQE 326


>gi|313115851|ref|ZP_07801284.1| DNA polymerase III, delta subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621828|gb|EFQ05350.1| DNA polymerase III, delta subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 342

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 117/332 (35%), Gaps = 25/332 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ FY S++ L+ + +    + ++    +  +++   A EI++          + S F 
Sbjct: 16  PVYYFYSSERYLVRQAVTAITRILTADSDEDATVLDGAAPEIEQ----LIMAAGTISFFG 71

Query: 82  KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133
            ++++++  +         LEE+   + ++ N ++++      + +++K     +K+   
Sbjct: 72  TRRVVVLPEIDPAAYSDKDLEELNSTLSSLENAVVVLGSVFELERSKLKTGKRAQKLI-- 129

Query: 134 FTSVLAISCYPDNKI-----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                A+  Y +         L  ++ +     + ++   A   LL   G D     NE+
Sbjct: 130 -AQCKALG-YTEELAKPKPFELKMMMIDRAKEQKTTLPDGAAAALLERCGEDPFLLENEV 187

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL +       +T   V ++   +    + E+I          A       L  +    
Sbjct: 188 DKLCALS-GYQTVTAAMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPI 246

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVR 307
           A+    +  +  L ++ +       ++  + +    K      +   + +   +    + 
Sbjct: 247 AITAAMIGSYVDLYRVKLGA-AKRKNYSTVFKDFGYKGSDYRLKRSAETA-SHYTLGQIE 304

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +  +       + +   ++ ++   +  +A
Sbjct: 305 NCMQVLLELDQSLKSQPTDDQILLETALCRLA 336


>gi|194337562|ref|YP_002019356.1| DNA polymerase III, delta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310039|gb|ACF44739.1| DNA polymerase III, delta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 346

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 32/230 (13%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80
            V++FYG++  L  E  +  K  +  +  D   +  +L A ++        ++ +   +F
Sbjct: 15  PVYLFYGTESYLKEEFADLIKTAVFPSESDAACNTHILYAPDLT--PGELISKASEYPMF 72

Query: 81  SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------- 124
           + K++I++              +K+  +     +       ++I+ + +I+K        
Sbjct: 73  TPKQLIIVRQFEKIKKPPTRELQKQHEEKFSRYLTNPAEFTVLILDAGQIEKKEIEKPPF 132

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +TL+K    F ++     +  N+                S   +A +   A +       
Sbjct: 133 STLKKYRHDFPAIKTPELFASNRA----------KASGWSFEPDALKAFTAYIEPSAREI 182

Query: 185 RNELQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            +E++K+  Y      +  IT   V D +  +    + E+  A  +  + 
Sbjct: 183 CHEIEKIILYASARGAEKRITASDVLDSVGVSRTYNVFELEKALAERSLR 232


>gi|302340526|ref|YP_003805732.1| DNA polymerase III subunit delta [Spirochaeta smaragdinae DSM
           11293]
 gi|301637711|gb|ADK83138.1| DNA polymerase III, delta subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 342

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80
            VF+  G ++G     I + KK I+    DP +        E +  IS+    + + SLF
Sbjct: 10  PVFLLLGPEEGEKAAFIAEIKKRIAA--EDPGYESTRFYPYETE--ISSIVGVLRNGSLF 65

Query: 81  SKKKIILIENLSTEKKVLDCLE-EIIIKNICNHIIIIKSNEIKKN--NTLRKIAEKFTSV 137
           S +K+++I+N+   K+    L  E +     +  +I+ SN ++++    +     K    
Sbjct: 66  SSRKLVIIQNVEAIKRDDAALLGEYLKNPSTDATLIMVSNGMERDIAKAIASAVPKEHKK 125

Query: 138 LAISCYPDNKIH-LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +    + + K   L +            +S EA  ++L  +  +    +    +L+ +  
Sbjct: 126 MFWELFENQKRSWLANY----FGRQHIEVSPEALDLILELVENNTREMKIACDQLALHFG 181

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHGFL 255
               I E+ V   I  +    +  +           AI      L S       L  G L
Sbjct: 182 PGSCIDEEDVDAFIFHSKEENVFTLFAKIGACDFSGAIEALRKLLLSGEGNPIQLFAGLL 241

Query: 256 QKFQLLEKI 264
            +F+ L  +
Sbjct: 242 WQFKRLLSL 250


>gi|269127472|ref|YP_003300842.1| DNA polymerase III subunit delta [Thermomonospora curvata DSM
           43183]
 gi|268312430|gb|ACY98804.1| DNA polymerase III, delta subunit [Thermomonospora curvata DSM
           43183]
          Length = 319

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 101/310 (32%), Gaps = 23/310 (7%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            +  + +  G ++ L+ E         +        ++ L    ++        E+ S S
Sbjct: 2   PADPLTLIVGDEE-LLAERAVGEVIAAARADDPETEVIDLTPENLEA--GRLA-ELTSPS 57

Query: 79  LFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNN---TLRKIAEK 133
           LF   K++++ +     K+++  +     +   +  ++ + +   K       L K   +
Sbjct: 58  LFGGGKVLVLRSAQDLGKELIAEVLAYAERPADDVALVAVHAGGAKGKALVDGLSKAGAR 117

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             +   I          +  +   +     +I  EA + L+  +G D         +L +
Sbjct: 118 KVTCSKI----TKPGERVAFVRAEVRRCGGTIGAEAARALVDAVGHDLRELAAACSQLVA 173

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  I+E+ V         +    + ++ ++G +  A+    + LA+ +    +   
Sbjct: 174 DTGGK--ISEEAVARYYRGQAEVSGFNVADSAVEGDLVQALEKLRWALATGVAPVQITSA 231

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEK--NIIPMKRNILQESLRIWNKNLVRETLH 311
                   + +  + + S            K   + P K +  Q  LR W+ + +   L 
Sbjct: 232 LA------QGVRALAKVSGAPRGARGAALAKELGMPPWKIDKTQRQLRGWSADGIARALR 285

Query: 312 KIDHRIHLAR 321
            +       +
Sbjct: 286 VVADADAQVK 295


>gi|218131100|ref|ZP_03459904.1| hypothetical protein BACEGG_02705 [Bacteroides eggerthii DSM 20697]
 gi|217986804|gb|EEC53137.1| hypothetical protein BACEGG_02705 [Bacteroides eggerthii DSM 20697]
          Length = 339

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 115/326 (35%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  L +    NI       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPVYYLMGEEPYYIDLLSDYITDNILNETEKEFNLTVMYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   S +
Sbjct: 79  SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKSGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197
                      L   I   +      +  +A  +L   +G D      EL+KL     + 
Sbjct: 136 LFESKKVRDAQLPTFITSYMKRKGVDMDPKATSMLADFVGTDLSRLTGELEKLIITLPKS 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              +T + ++  I  +      E+ +A ++  I  A  +  +F  +    P    L    
Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E +       I           R  L  ++R +N     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338
               ++      L  + ++ + I  I
Sbjct: 312 TDAKSKGVGNSSLNDSDLLRELIFKI 337


>gi|61657426|emb|CAI44341.1| hypothetical protein [Thermotoga sp. RQ7]
          Length = 329

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 26/295 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V    G+ +    ELI +  K       +    + ++  +  K ++   + IN+ ++FS
Sbjct: 7   PVTFLTGASETKKEELIKKLLK------DEKAEYIRIHPDDPDK-LNFLRSIINTRTIFS 59

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            K ++ I +  + +        E++     +  I +           R        V   
Sbjct: 60  GKTVVDIIDFDSWRSQEQKRFLELVKNVPEDVHIFV-----------RSQKSTAKGVNLD 108

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
              P      ++ IE+        I+K+A Q+  + +G + +    E++KL +Y  E   
Sbjct: 109 LPKPWETDKWLEWIEKRFRESGLKITKDALQLFFSKVGTNDLLIEREIEKLKAYS-ETGN 167

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+ + V++++        +E   A  +GK   A  L             +    +  F  
Sbjct: 168 ISAEDVEEVVFTYQSPGYDEFCFAVSEGKRRLAHALLSQMWK-NTEPVVISAVLVNHFLD 226

Query: 261 LEKIHIIKECSN----ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
           L K+ ++             KI ++    + P     L  + + W   ++   L+
Sbjct: 227 LFKLVVLVTRKRYYTWPDISKISKELGMPV-PRVARFLGFAFKAWKFKVINHLLY 280


>gi|315607799|ref|ZP_07882792.1| DNA-directed DNA polymerase III delta subunit [Prevotella buccae
           ATCC 33574]
 gi|315250268|gb|EFU30264.1| DNA-directed DNA polymerase III delta subunit [Prevotella buccae
           ATCC 33574]
          Length = 342

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 127/329 (38%), Gaps = 17/329 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           MA  +S        ++L       V++  G +   I  + +   +N+       F+ +VL
Sbjct: 1   MAEKKSGPSFDAIMRDLQARKFAPVYVLMGDESYYIDRITDYITENVLSPEERDFNQMVL 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116
              +     +   +      + S+ ++++++     + + + +E+ + K + + I+++  
Sbjct: 61  FGADTTA--AQIADMARRYPMMSEYQVVVVKEAQNLRNL-EPIEKYLEKPVKSTILVLCH 117

Query: 117 KSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           K+  + +    +KI  K  +V +           L   IE  L     +I  +A Q++  
Sbjct: 118 KNGVLDRR---KKIFAKAQAVGVVFESRKLYDRELPPFIENYLKRKNAAIDPKATQMIAD 174

Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
           ++G D     +EL+K L S    +  +T + V+  I  +      E+ +A +   ++ A 
Sbjct: 175 HIGADLNRLTSELEKVLISLPESNRRVTPEVVEREIEVSKDFNAFELRDAIVNRNVFKAN 234

Query: 235 MLADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
            +  +F ++      ++ L      FQ L   +   +  +            +     R+
Sbjct: 235 QIIKYFDSNPKAGSIYSFLPLLFSYFQNLMIAYYAPKKQDADAVAKFLDLRNS--WAARD 292

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            L   +R ++ N   + + K+      ++
Sbjct: 293 YLT-GMRNYSGNKTLQIIDKLREIDAKSK 320


>gi|302874291|ref|YP_003842924.1| DNA polymerase III, delta subunit [Clostridium cellulovorans 743B]
 gi|307689445|ref|ZP_07631891.1| DNA polymerase III subunit delta [Clostridium cellulovorans 743B]
 gi|302577148|gb|ADL51160.1| DNA polymerase III, delta subunit [Clostridium cellulovorans 743B]
          Length = 343

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 111/328 (33%), Gaps = 18/328 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +I +G ++ LI E I    K       + F L  +    I        N   +      K
Sbjct: 20  YILFGFNESLIKENIRNISKKQLDP--NFFDLNYVQFDGITSKAEDIINSCETLPFMDSK 77

Query: 84  KIILIENL------STEKKVLDC-----LEEIIIKNICNHIIIIK-SNEIKKNNTLRKIA 131
           +I+++           ++ V        +   I K   + I+I+    + K++   +KI 
Sbjct: 78  RIVVVYRAVFLEDDGKQQGVSAEDTFKKISAYIDKVPEHCILILYYVFDEKRDKASKKIK 137

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                   +         L   ++       + I K    +  + L  +     NE++KL
Sbjct: 138 ALEKKCTVVEFKQLKSATLQKKVKVLFEERNQPIEKAELSLFCSGLDNNMDIIINEVEKL 197

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             Y L    IT++ +  +        I  +++   Q     A+ + +  +        +L
Sbjct: 198 CCYALG-RTITKEDIFLLAPPKSDSDIFNLVDYVSQKNTKVALDILNELIFRGEKFPVIL 256

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               ++F+++  + +       + E + ++   ++ P     +    + + +  + + L 
Sbjct: 257 SMIERQFKIILSLKL-GSKKGKNLEVLSKEL--HLNPYIAEKMMAQSKKFTEEKLMKILG 313

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIA 339
                  + +      K  + + ++ IA
Sbjct: 314 HCLESERILKSSSVDVKIELERLLIKIA 341


>gi|255020634|ref|ZP_05292696.1| DNA polymerase III delta subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969870|gb|EET27370.1| DNA polymerase III delta subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 329

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 9/189 (4%)

Query: 68  STFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
               +E ++ +LF++K+  I+ ++ L   +   + L   +        + +     + + 
Sbjct: 60  ERLRDERDALTLFAEKRCLILQMDQLKLSRAATNALAHWLAAPAEMARLCLVGP--RPDA 117

Query: 126 TLRKIA---EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             +K A   +       +  YP N       +   L          A+ +L     G+ +
Sbjct: 118 GQQKSAWFRDLEKHATVLILYPPNAQEWPQWVGRRLQQAGLEADDSARHLLCELTAGNLV 177

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A +  + +L  +      I    V++++ D     + E+ +A ++G++     + D    
Sbjct: 178 ACQQAILRLREFAG--TRIDAATVRELLADDSRFTVFELADAALRGEVERIDHILDRLRG 235

Query: 243 SKMPSHALL 251
                  LL
Sbjct: 236 GDAEPVLLL 244


>gi|88855050|ref|ZP_01129715.1| DNA polymerase III, delta subunit [marine actinobacterium PHSC20C1]
 gi|88815578|gb|EAR25435.1| DNA polymerase III, delta subunit [marine actinobacterium PHSC20C1]
          Length = 347

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 107/333 (32%), Gaps = 21/333 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN---ISTFWNEINSTS 78
            + +  G++ G + +   +  +           +  L   +++ +          + S S
Sbjct: 29  PIVLVSGTE-GFLADRAIRLLRETLKVEDPSLEVSDLEVSDLEADQYAPGELI-SLASPS 86

Query: 79  LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTS 136
           LFS+ ++I I N+       +      +     +  ++++ +  ++    L  I      
Sbjct: 87  LFSEPRLIRITNVEKCTDAFITETLSYLNAPADDTYVVLRHAGGVRGKKLLDAIRAGAGG 146

Query: 137 VLAISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            + I C  D K                 + ++  A + L++    D        Q+L   
Sbjct: 147 GIEIMC-VDLKKDTEKYEFAAAEFSSKGRRVTPGALRTLVSAFSADLAELAAACQQLI-- 203

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   I E  V             ++ ++ I G+   A++L    LAS      ++  F
Sbjct: 204 ADDADEINEATVARYYSGRVETSAFKVADSAIAGRPGEALVLLRHALASGADPVPIVAAF 263

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
                   K+  + + S  S           + P +     + ++ W+   +   +  I 
Sbjct: 264 A------MKLRTMAKLSGGSMSSGQAAKTFGMAPWQAERAMKDVKGWSDEGLGAAIETIA 317

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
                 +    L ++ +F     IA  A + N 
Sbjct: 318 DTDAQVK---GLGRDPVFALERMIAVVAARGNR 347


>gi|330752547|emb|CBL87494.1| DNA polymerase III subunit delta [uncultured Flavobacteria
           bacterium]
          Length = 265

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 97/250 (38%), Gaps = 10/250 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V+   G +   I  +       I       F+  +    +   +++   NE+        
Sbjct: 18  VYFLMGDEPYFIDSITKTAIDTIIPDEDKTFNQAIFYGRD--SDVNIILNELKQYPFGFH 75

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAI 140
           K++I+I      K + + LE    K   + I+I+  K+ ++ K   + KI E  ++ +  
Sbjct: 76  KRLIIIREAQHLKNI-EYLENYFEKPQVSSILIVCYKNKKLDKRKKIYKILE--SNHVIF 132

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +        + D I + L I    I  +A   L+  +G D     NE+ KL S       
Sbjct: 133 NSQKIYDNKIADWIRKYLEIKNIVIEPKACSTLIEYIGNDLSKISNEINKLCSDSSIKK- 191

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL--ASKMPSHALLHGFLQKF 258
           IT   + D I  +    + E+  +  +     A+++ ++F   A+K PS  +L      +
Sbjct: 192 ITNDLINDQIGISKKYNLFELQKSLAKKDKNKALIIMNYFAANANKNPSVLILSSIFNYY 251

Query: 259 QLLEKIHIIK 268
             L  I  IK
Sbjct: 252 NKLLLIKQIK 261


>gi|68535645|ref|YP_250350.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium K411]
 gi|68263244|emb|CAI36732.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium K411]
          Length = 327

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 107/324 (33%), Gaps = 13/324 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G D  L                 DP   V +              E+ S SLF+
Sbjct: 9   PINLIVGGDDFLAERRRQGIVNQARAASGDPNLPVEMRKASELSAPE--LAELLSPSLFA 66

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + +I+++  +    K +  L E  IK+  + +++I  +  K  N   K+ + +  + A+ 
Sbjct: 67  EDRIVVVTGVEDTGKEIVGLLEQAIKDPADGVVLIIVHTGKGRNK--KLVDSWPKLGAVV 124

Query: 142 CYPDN--KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                      +  I++        +++E  ++LL  +G D     + + +L      D 
Sbjct: 125 FQAGALKGREQLAFIDQEFRSQGARVTREVCELLLDVVGSDLRQLASAISQLI--ADTDG 182

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +    VK        +   E+ +  I G +  A+ LA   L   +    L         
Sbjct: 183 HVDAAAVKRYYQGKAEVSGFEVADYAIAGNVRAAVALARRALQLGVAPVLLASALSS--- 239

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            +  I  +    NI+  +     +  + P K +    + R W   ++ + +         
Sbjct: 240 GIADIAKVAGAGNINSRR--DAAKFGMAPWKLDKTIRTARRWTTPMIAQAVQITAELDAG 297

Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343
            +         +   +  IA  A 
Sbjct: 298 VKGHSADPDFAVEDAVRKIAHVAG 321


>gi|217967492|ref|YP_002352998.1| DNA polymerase III, delta subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336591|gb|ACK42384.1| DNA polymerase III, delta subunit [Dictyoglomus turgidum DSM 6724]
          Length = 328

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 125/320 (39%), Gaps = 12/320 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F G +K L+ E + + KK      +     V   A EI  +       + S SL  
Sbjct: 17  PVYLFTGEEKFLMEEALEELKKARFKNAN----YVAFFADEISWD--NLVPYLESPSLLG 70

Query: 82  KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            + +I+I +    K + +    +++ K + N  I+  +N  ++       A+       +
Sbjct: 71  DQ-LIVIRHAQELKDQNMPKKLDLLFKRLTNTCIVFMANAEEEKAKRMSYAKYIPPEGLV 129

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
                    L   I+E      KSI +E+   L  N          E++K+ ++  E   
Sbjct: 130 EFTKFRADALRRWIKEKFQEKGKSIDEESIYFLSINYADKIGILMQEIEKICAFVGERNE 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           +T + +K ++     +     ++A ++     A    D   +  +    +L   +++ + 
Sbjct: 190 VTIEDLKKVLATQ-EVAFYTFLDALLRRDFLIAFSGIDALWSEGVYPQVILEIVIKQIRQ 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L +I+ +      S ++I +K   +   +K++I  E+L  +    + E    +       
Sbjct: 249 LLRINALL-KDGYSSDEIKEKLGLHPFVVKKSI--EALTKYTAAELMEIYFLLRQVDMDY 305

Query: 321 RKKKYLEKNIIFQTILYIAQ 340
           +     ++ +I + IL + +
Sbjct: 306 KTTSKDQRILIEKVILKLGR 325


>gi|119485565|ref|ZP_01619840.1| hypothetical protein L8106_24320 [Lyngbya sp. PCC 8106]
 gi|119456890|gb|EAW38017.1| hypothetical protein L8106_24320 [Lyngbya sp. PCC 8106]
          Length = 331

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 110/300 (36%), Gaps = 30/300 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++++G D+  + + ++  +++I       F+   +        IS   N+  +     
Sbjct: 2   PVYLYWGDDEFSLAKAVDALRESILDPSWSTFNFDKILPDSQNSVISGL-NQAMTPPFGL 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS------------NEIKKNNTLRK 129
             +++ + N    ++    + + + + +    +I ++              +K    L++
Sbjct: 61  GNRLVWLVNTPITQQCSQEVYQELERTLA---VIPETTTLLLTTPNKPDGRLKSTKLLQR 117

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            A        IS +  ++  L   +++        ++    ++L   +G D     NEL+
Sbjct: 118 HA-TVKEFSRISPWKTDQ--LEQRVKQVAAEVGVRLTSPGVELLAEAVGNDTQQLYNELE 174

Query: 190 KLSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           KL  Y   D   +  + +  ++       + ++  A   G    A+ L    +    PS 
Sbjct: 175 KLKLYAGNDSEALKLEAIATLVQSNTQNSL-KLAQAIKAGNTNQALELIAALIDHNEPSL 233

Query: 249 ALLHGFLQKFQ-----LLEKIHIIKECSNISFEKIIQKTEKNIIPMK---RNILQESLRI 300
            ++   + +F+      L     +K+   I+    I   ++ I  ++   +++    L+ 
Sbjct: 234 KIVATLVGQFRTWLWVKLMIDRRVKDEREIAKVAEIGNPKR-IYFLRQEVQSLSVRQLQH 292


>gi|37519635|ref|NP_923012.1| DNA polymerase III subunit delta [Gloeobacter violaceus PCC 7421]
 gi|35210626|dbj|BAC88007.1| gll0066 [Gloeobacter violaceus PCC 7421]
          Length = 321

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 110/331 (33%), Gaps = 20/331 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +++G D     + + Q +        + F+        +        N+  S     
Sbjct: 2   PVHLYWGEDAYRRGQAVEQLRAAAVEPAWEAFNFGRYAGEALIDA----LNQAASAPFGG 57

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIK-----SNEIKKNNTLRKIAE 132
             +++ +E         +  L  L   +     N  ++          +K    + K+ E
Sbjct: 58  GGRLVWVEEARIFSHCPEGELAELARTLPHLHPNGHLLFTLQGKPDGRLKSTKLVAKVGE 117

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                L I  + +    L   +++     + ++S  A Q+L   +G D     NEL+KL+
Sbjct: 118 VREFSL-IPPWQE--AKLKAQVQQMAQERKVTLSAPALQLLTEAVGNDTRRLDNELEKLA 174

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +      +  + V  ++  T     +         +   A+ + D  L    P+  +  
Sbjct: 175 LFAQGRS-VDAEAVGALVATTAHTSFQLAAALLAG-EAATALRVLDELLRRNEPALRIQA 232

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             + +F+    + ++ E      + I    E    P +   LQ+ +   +   +   L  
Sbjct: 233 VLVNQFRTWLWVRVLIEAGERDAQAIAAAAE-IANPGRVYFLQKEVERTSAERLGRVLPI 291

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           +   + +A K    E+  +   +L+I     
Sbjct: 292 LLG-LEVALKSGRPERAALESAVLHIVNALR 321


>gi|16272860|ref|NP_439083.1| DNA polymerase III subunit delta [Haemophilus influenzae Rd KW20]
 gi|260580012|ref|ZP_05847842.1| DNA polymerase III, delta subunit [Haemophilus influenzae RdAW]
 gi|1170333|sp|P43747|HOLA_HAEIN RecName: Full=DNA polymerase III subunit delta
 gi|1573945|gb|AAC22583.1| DNA polymerase III, delta subunit (holA) [Haemophilus influenzae Rd
           KW20]
 gi|260093296|gb|EEW77229.1| DNA polymerase III, delta subunit [Haemophilus influenzae RdAW]
          Length = 344

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 119/312 (38%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  ++   D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANLQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQVAKLAKGIEKQTWFITLNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 TILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  +    LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLVGKANRAKRILKGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPIQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   LA+++
Sbjct: 315 ELANIERLAKQE 326


>gi|302391382|ref|YP_003827202.1| DNA polymerase III subunit delta [Acetohalobium arabaticum DSM
           5501]
 gi|302203459|gb|ADL12137.1| DNA polymerase III, delta subunit [Acetohalobium arabaticum DSM
           5501]
          Length = 341

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 119/303 (39%), Gaps = 15/303 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G ++ L+ E I+QF           F+L  +N       ++   N +N      
Sbjct: 16  NLYLLIGDEEYLMKEFIDQFITEFVEEEFKDFNLDTINDSN-DGFLTKLSNSVNQLPFMV 74

Query: 82  KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIK-KNNTLRKIAEKFT 135
            ++I ++           K   + L+E++       I+++K+     K   L K  ++  
Sbjct: 75  DRRITILNGERLFTNRFNKDETEDLKELLNDFAETSILLVKTTNQPDKRRKLYKAFKESG 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            +L           L + IE         I  +A ++L      +     +ELQK+S++ 
Sbjct: 135 QILDFENLK--YKALDEWIETRANELGNKIDSKAVKLLEKMFNNNLQRLDSELQKISTFL 192

Query: 196 LEDILITEQHVKDIICDT---HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
               ++T + V+ II          I + ++A  +     A+ L +  + +      LL 
Sbjct: 193 GSKEIMTFKKVRQIISKDRLLKENIIFDFVDAIGEQNNEQALHLLNQMINNGQSEIGLLM 252

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              ++ +L+ +   + +      ++I  +  ++  P+K+ I  +  + ++ + + + L +
Sbjct: 253 MIARQVRLILQCKELYQ-QGKKPQQIANRLNQHPYPIKKCI--KQSKNFSISELEDILEQ 309

Query: 313 IDH 315
           +  
Sbjct: 310 LLE 312


>gi|218133046|ref|ZP_03461850.1| hypothetical protein BACPEC_00908 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991919|gb|EEC57923.1| hypothetical protein BACPEC_00908 [Bacteroides pectinophilus ATCC
           43243]
          Length = 197

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 6/185 (3%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+  +E  +    ++I++ A Q LL   G      R E++KL  Y L+   ITE  + +I
Sbjct: 9   LIRWVEGLVKAEGRTITRPAVQHLLDKTGVQMSNIRTEVEKLICYTLDKPEITEADIDEI 68

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
                   I ++I A    +   A+ L    L  + P   +L+   ++F ++ ++  +  
Sbjct: 69  CTTQIQNKIFDMITAISMKRQKEALDLYYDLLMLREPPMRILYLITRQFNMMLQVKELV- 127

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH---RIHLARKKKYL 326
                   I ++       + +       + +    +RE L         +   R    +
Sbjct: 128 LQRYDQAAIAKQLGIAGFLVNK--YVNQSKHFAAEQIREALEYFAESETAVKTGRLDDKM 185

Query: 327 EKNII 331
              +I
Sbjct: 186 AVELI 190


>gi|308276936|gb|ADO26835.1| DNA polymerase III delta subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 320

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 102/292 (34%), Gaps = 18/292 (6%)

Query: 22  FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V +  G D+ L  E    +   +I     D  ++  L A E+ +  S   + + S SLF
Sbjct: 3   PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 58

Query: 81  SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            + +II++     + ++     L   +      ++II+ S   ++  T+ K  +      
Sbjct: 59  GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHA 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A    P  +   +  +           + +    LL  +G +     + + +L      +
Sbjct: 119 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 173

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   V+D       +   ++ +    G+   A+  A   L   +   AL      K 
Sbjct: 174 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 233

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309
             + +++  +    I    + ++      +  K   +  +   WN + + + 
Sbjct: 234 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 280


>gi|311031606|ref|ZP_07709696.1| DNA polymerase III subunit delta [Bacillus sp. m3-13]
          Length = 314

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 117/312 (37%), Gaps = 16/312 (5%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN---L 91
            E+ N   ++        F+L   +  E   +++    +  +     +++++++ N   L
Sbjct: 2   KEIRNSIIEHALDEEEHDFNLSFYDMEEQPVDVAI--EDAETLPFMGERRVVVLSNPFFL 59

Query: 92  STEKKVL------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145
           + EK         D     I +     I +I+++  K +   + + +       I   P 
Sbjct: 60  TAEKSKSKVEHNTDRFLAYIQEAAPYTIFVIQASYEKLDERKKVVKQLKKQAEVIEVQPL 119

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQ 204
            +  L   ++E  L     +S  A + LL   G +      E+ K++ Y    +  IT  
Sbjct: 120 GERDLKIWMKEKALQNGADLSDAASEELLKIAGVNLSVLSQEINKMAMYIGVSEPEITVD 179

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            VK +   +    + E+I   +  K+  A+ L    + +      L      +F+LL ++
Sbjct: 180 VVKKLAAKSIEHSVFELIEKMVHRKVDEALGLFYDLVRNNEEPIKLHALIANQFRLLYQV 239

Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
             + E      ++ +    + + P +  +  +    + +  + + +  +    +L  K  
Sbjct: 240 KDLSEQG--YSQQKMAGILR-VHPYRVKLASQQGGYFERAELMKMVDDLAEADYLM-KSG 295

Query: 325 YLEKNIIFQTIL 336
            ++K +  + +L
Sbjct: 296 KIDKQLAMEMLL 307


>gi|300728130|ref|ZP_07061501.1| DNA polymerase III, delta subunit [Prevotella bryantii B14]
 gi|299774556|gb|EFI71177.1| DNA polymerase III, delta subunit [Prevotella bryantii B14]
          Length = 343

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 107/282 (37%), Gaps = 11/282 (3%)

Query: 1   MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           M   +S        K+L   +   ++I  G +   I ++ N    N+       F+  ++
Sbjct: 1   MVEKKSEVSYGSLMKDLKARNFSPIYILEGDESFYIDKISNYIVDNVLQPDQRDFNQTIV 60

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116
              ++    +   +  +   + ++ ++++++     K + D LE+   K   + I++   
Sbjct: 61  FGSDVTA--AQIVDIASRYPIMAEYQVVIVKESQNLKNL-DILEKYFQKPAKSTILVFCH 117

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           K+  I K   +  IA+     +           L   IE  L   + +I  +A  +++ +
Sbjct: 118 KNGTIDKRKKVYAIAQ-ANGGVIFESKKLRDRELPGFIETYLKERKATIEAKASMMIVDH 176

Query: 177 LGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           +G D     +EL K L S    D  +T + V+  I  +      E+ NA I   ++    
Sbjct: 177 VGADLSRLTSELDKVLISLPENDRRVTPEIVEKEIGVSKDFNGFELRNAIINRDVFKVNQ 236

Query: 236 LADFFLAS--KMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
           +  +F ++      ++ L      F+ L   +   +  +   
Sbjct: 237 IVKYFDSNPKAGSMYSFLPLLFSYFENLMVAYYAPQKQDPDA 278


>gi|317056555|ref|YP_004105022.1| DNA polymerase III subunit delta [Ruminococcus albus 7]
 gi|315448824|gb|ADU22388.1| DNA polymerase III, delta subunit [Ruminococcus albus 7]
          Length = 355

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++ FYG D   I   +      +        +        +  +I +  +   +  +F++
Sbjct: 21  LYYFYGHDTASIESFVRWLINKLCPKDAQFMNFHKFEGKGL--DIPSLIDACEALPMFAE 78

Query: 83  KKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVL 138
           + +I I +L  E   K+  D L +I+        +II S  +      R + +K      
Sbjct: 79  RVVIAINDLRMEDISKEDGDSLRKIVSNLSETTTVIIYSTGVDLYKNKRNLTDKNKRFCD 138

Query: 139 AISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
             + Y D           L   I  +L     +I K   + L    G D    + E+ KL
Sbjct: 139 YCAKYGDVVDFAYKTASELGRSIAAALQKNGCAIDKRTAEYLAECCGCDSAYIKQEIDKL 198

Query: 192 SSYCLEDILITEQHVKDII 210
           S+Y      IT+  +  I 
Sbjct: 199 SAYAKGRS-ITKDDIDTIC 216


>gi|294812569|ref|ZP_06771212.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|326440978|ref|ZP_08215712.1| DNA polymerase III, delta subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|294325168|gb|EFG06811.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 332

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 100/292 (34%), Gaps = 15/292 (5%)

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII 116
           L A ++Q    T   E+ S SLF+++K++++ N        +  ++  +        ++ 
Sbjct: 53  LTADQLQ--PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDIKGYLTAPAEEITLVF 109

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILL 174
                 K   L   A K      ++C P        L  +        +S + EA Q L+
Sbjct: 110 VHPGGAKGKGLLDAARKA-GAREVAC-PKTTKPAERLTFVRAEFRTLGRSATPEACQALV 167

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
             +G D     +   +L+     +  I E  V              + +  ++G+   A+
Sbjct: 168 DAIGSDLRELASAASQLT--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEAL 225

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
               + LA+ +    +     Q  + + K+   +       +   +         K + +
Sbjct: 226 EALRWSLATGVAPVLITSALAQGVRAIGKLSAAR--GGRPADLARELGMPP---WKIDRV 280

Query: 295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
           ++ +R W  + V   L  +       +      +  + + ++ IA+ A    
Sbjct: 281 RQQMRGWTPDGVAVALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRR 332


>gi|78183656|ref|YP_376090.1| DNA polymerase III subunit delta [Synechococcus sp. CC9902]
 gi|78167950|gb|ABB25047.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9902]
          Length = 321

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 104/291 (35%), Gaps = 20/291 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       I+   ++         +L  L+  E  + I     E  +    +
Sbjct: 2   PIHLIWGDDAAARDRAIDGLIQSCVDPSWSSLNLSRLDGAETGQAIQAL-EEARTPPFAT 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
            ++++L++          ++ D  E  +     +  +++ +       ++   TL+K  +
Sbjct: 61  GERLVLLQRSPFCNGCPSELADRFEAALELIPNSSHLVLVNPSKPDGRLRTTKTLQKRIK 120

Query: 133 KFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +   +      P   +      L++ +      ++  +A   L+  +G D     +EL+K
Sbjct: 121 QGLDLEQSFPLPTAWDGAGQRQLVQRTADALSLTVEPDAIDALVEAIGTDSARLESELRK 180

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS        IT   VK+++       +  + +A + G    AI   D  + +  P+  +
Sbjct: 181 LSLRT---TTITAALVKELVGGRATNAL-AVGDALLDGNAGEAIARWDALIDAGEPALRI 236

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQES 297
           +     + +    + ++++        I +       K I  M++ +    
Sbjct: 237 VATLTGQLRGWLWVSLLEQQGERDVAVIAKAAGIGNPKRIYVMRKQLQGRQ 287


>gi|113953684|ref|YP_729315.1| DNA polymerase III subunit delta [Synechococcus sp. CC9311]
 gi|113881035|gb|ABI45993.1| DNA polymerase III, delta subunit [Synechococcus sp. CC9311]
          Length = 326

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 103/293 (35%), Gaps = 20/293 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D       +    +          +L  L+  E          E  +    +
Sbjct: 2   PIHLLWGDDSAARDRAVAALIEEAIDPTWSSINLSRLDGSE-AGQAQQALEEARTPPFGA 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR---KIAEKF 134
             +++L++      +   ++ D  E  +     +  +++ +   K +  LR    + ++ 
Sbjct: 61  GMRVVLLQRSPFCNACPSELADRFEAALELIPDSTQLVLTNPA-KPDGRLRTTKALQKRV 119

Query: 135 TSVLA------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
              LA      +    D       L+E +       +  EA   L+  +G D      EL
Sbjct: 120 KQGLASEQKFQLPAIWDGAGQ-RQLVERTAAGLNVDMEAEAVSALVDAIGNDSARLTMEL 178

Query: 189 QKLSSYC--LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           QKL+ +        I+ + V+ +I       +  + +A ++G    AI L D  + +  P
Sbjct: 179 QKLALHAESHGHKRISAEAVQTLIEGQATSAL-AVGDALLEGDAGGAIGLLDALIDAGEP 237

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
           +  ++     + +    + ++++        I +       P +  ++++ L+
Sbjct: 238 ALRIVATLTGQIRGWLWVLLLEQQGERDVAVIAKAAGIG-NPKRIYVMRKQLQ 289


>gi|300858995|ref|YP_003783978.1| DNA polymerase III subunit delta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686449|gb|ADK29371.1| DNA polymerase III delta subunit [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331246|gb|ADL21440.1| DNA polymerase III delta subunit [Corynebacterium
           pseudotuberculosis 1002]
          Length = 320

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 103/292 (35%), Gaps = 18/292 (6%)

Query: 22  FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V +  G D+ L  E    +   +I     D  ++  L A E+ +  S   + + S SLF
Sbjct: 3   PVHLVLGDDEFL-AERARLRVINSIKAQAGDDITVSSLRAGEVNQ--SELID-LLSPSLF 58

Query: 81  SKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            + +II++     + ++     L   +      ++II+ S   ++  T+ K  +     +
Sbjct: 59  GEDRIIVLNKAEEAGKEPTQLILSAAVDPGPGIYLIIVHSGGGRQKATIPKFKKIAEVHV 118

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           A    P  +   +  +           + +    LL  +G +     + + +L      +
Sbjct: 119 ANKLKPSER---VPWVNAEFRAQGVRPTPDVVHALLEGVGSNLRELASAISQLI--ADNN 173

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   V+D       +   ++ +    G+   A+  A   L   +   AL      K 
Sbjct: 174 GEITAAKVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAAALSYKI 233

Query: 259 QLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRET 309
             + +++  +    I    + ++      +  K   +  +   WN + + + 
Sbjct: 234 GGIARLYSAR--GRIDSAGLARQLGMAPFVVEKTAKVARA---WNGDAISQA 280


>gi|325528573|gb|EGD05676.1| DNA polymerase III subunit delta [Burkholderia sp. TJI49]
          Length = 218

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 86/219 (39%), Gaps = 12/219 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 4   LYTVYGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSVLLGATQAMSLFGE 60

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
           +++I   I +    K+  D L+ +      + ++++    +             ++  +A
Sbjct: 61  RQLIELRIPSGKPGKEGADALKTLAATPNPDALMLVTLPRLDAATQKSAWFIALSNGGVA 120

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 121 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 179

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
                 ++ + V D + +     + ++  A + G     
Sbjct: 180 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARL 218


>gi|171463052|ref|YP_001797165.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192590|gb|ACB43551.1| DNA polymerase III, delta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 353

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 114/327 (34%), Gaps = 23/327 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  +++ +   KS         +++F G +  L+ E ++Q +          F+   +  
Sbjct: 1   MVKVDALQAHLKSLSAGGSMLPLYVFSGDEPLLMMEAMDQLRAAAKKQN---FTEREVLL 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKII--LIENLSTEKKVLDCLEEIIIK--------NIC 110
            E   + ST  +   + SLF  K+ +   I      +   D L++   +        +  
Sbjct: 58  QERGFDWSTLLSAGQTMSLFGDKRWVELRIPTGKPGRDGADTLKQFAAQIASQSSGADGP 117

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSV-LAISCYPDNKIHLMDLIEESLLI--GQKSISK 167
           + ++ I    +              +  +AI     ++ HL + I   L     +     
Sbjct: 118 DTVVCIVLPRLDGKTKTSAWFSALDNAGMAIQIDSLDRSHLPNWIAGRLKRQDQEVEAGP 177

Query: 168 E---AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           E     + +   + G+ IA+  E+ KL         ++E+ ++  I       + E+  A
Sbjct: 178 EGQRTLEFIADQVEGNLIAAHQEILKLGL-LYPVGKLSEEQIRSSILKVARYNVFELTEA 236

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
            + G +     + D       P   +L    ++ ++L K+    +    S + +++    
Sbjct: 237 MLAGDLARLNRMLDGLKGEGEPLVLILWSVTEELRILSKLKAASDA-GESVQNLMRANR- 294

Query: 285 NIIPMKRNILQESLRIWNKNLVRETLH 311
            I   K  +   +LR      +R  + 
Sbjct: 295 -IWGNKERLYPAALRRVQPLKLRRAMQ 320


>gi|260578285|ref|ZP_05846201.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258603587|gb|EEW16848.1| DNA polymerase III, delta subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 327

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 101/296 (34%), Gaps = 13/296 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G D  L                 DP   V +              E+ S SLF+
Sbjct: 9   PINLIVGGDDFLAERRRQGIVNQARAASGDPNLPVEMRKASELSAPE--LAELLSPSLFA 66

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + +I+++  +    K +  L E  IK+  + +++I  +  K  N   K+ + +  + A+ 
Sbjct: 67  EDRIVVVTGVEDTGKEIVGLLEQAIKDPADGVVLIIVHTGKGRNK--KLVDSWPKLGAVV 124

Query: 142 CYPDN--KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                      +  I++        +++E  ++LL  +G D     + + +L      D 
Sbjct: 125 FQAGALKGREQLAFIDQEFRSQGARVTREVCELLLDVVGSDLRQLASAISQLI--ADTDG 182

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +    VK        +   E+ +  I G +  A+ LA   L   +    L         
Sbjct: 183 HVDAAAVKRYYQGKAEVSGFEVADYAIAGNVRAAVALARRALQLGVAPVLLASALSS--- 239

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            +  I  +    NI+  +     +  + P K +    + R W   ++ + +     
Sbjct: 240 GIADIAKVAGAGNINSRR--DAAKFGMAPWKLDKTIRTARRWTTPMIAQAVQITAE 293


>gi|121596201|ref|YP_988097.1| DNA polymerase III subunit delta [Acidovorax sp. JS42]
 gi|120608281|gb|ABM44021.1| DNA polymerase III, delta subunit [Acidovorax sp. JS42]
          Length = 348

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 95/301 (31%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +  L  E ++  +       +   S   +       + S       S SLF
Sbjct: 17  RPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSFTVAGAHF--DWSGVLAAGGSLSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I+ I   +    K     L+++      N   + ++    + K             
Sbjct: 75  ADKQIVEIRIPSGKPGKDGAAALQQMAAAAPGNDSTLTVVVLPRLDKATRTGAWFAALEA 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQK 190
               +   P  +  L   I + L    + +      +   Q     + G+ +A+  E+QK
Sbjct: 135 HGATVQIDPVERAQLPGWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+     +  +T   V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPEGELTWAQVEAAVLNVARYDVFKLSEAVLSGQVARVQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + L+++             + +     +   K  + +  L   +   +   L
Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMALRENR---VWGAKERLFERLLPQASDAALARLL 310

Query: 311 H 311
            
Sbjct: 311 Q 311


>gi|110637941|ref|YP_678148.1| hypothetical protein CHU_1537 [Cytophaga hutchinsonii ATCC 33406]
 gi|110280622|gb|ABG58808.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 344

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 98/269 (36%), Gaps = 14/269 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I  + +  + N        F+  +L   +   N+ST         +FS
Sbjct: 22  PVYFLQGEEPYFIDLISSYIENNCLPESERGFNQTILYGKDT--NVSTILQNARKYPMFS 79

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRKIAEKF 134
           ++++++++         K   +      ++N     I++      ++     + K  +K+
Sbjct: 80  ERQVVMVKEAQDVSDLTKDSTEKFLMAYLENPLPTTILVFCHKYKKLDARKKITKHLQKY 139

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           +  +  +   DN   L + I          I  +A  +L  ++G D     NE+ KL   
Sbjct: 140 SVFVESAKLYDN--KLPEWINGYFREKNYRIDPKAVVLLAESIGTDLSRMANEIDKLLIN 197

Query: 195 CLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALL 251
             +    ITE  ++  +  +    + E+  A     I  A  + + F ++    P   +L
Sbjct: 198 VKDPAITITEDLIEKYVGVSKEYNVFELQKAIGVRDIIKANKIVNHFESNPKANPIVMVL 257

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
                 +  +  IH   + S  S  K++ 
Sbjct: 258 SSLFTYYLKILAIHAATDKSEASLAKVVG 286


>gi|304382311|ref|ZP_07364816.1| DNA-directed DNA polymerase III delta subunit [Prevotella marshii
           DSM 16973]
 gi|304336550|gb|EFM02781.1| DNA-directed DNA polymerase III delta subunit [Prevotella marshii
           DSM 16973]
          Length = 342

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 93/251 (37%), Gaps = 10/251 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I  L +   ++I       F+  V+   +I    +   +      + S
Sbjct: 24  PIYLLMGEESFYIDRLADYMAEHILQPDEQDFNQSVVFGSDITA--AQLADMARRYPMMS 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++I+++     K V D +E+ +   + + I+++  K+  I +   +    E     + 
Sbjct: 82  EYQVIIVKEAQNIKNV-DAIEKYLDNPVRSTILVLCHKNGIIDRRKKILAKIEA--VGVV 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-D 198
                     L   IE  L      I  ++ QI+  ++G D     +EL K+     E +
Sbjct: 139 FESKKKRDYELPAFIEGYLKTKGVGIDNKSVQIIADHIGADLHRLTSELDKVILSLPESE 198

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256
             IT   V+  I  +      E+ NA +   I+ A  + ++F  +         L     
Sbjct: 199 KRITPDVVERQIGVSKDFNSFELRNAIVSKDIFKANQIVNYFDKNPKAGSLYSFLPLLFG 258

Query: 257 KFQLLEKIHII 267
            FQ L   +  
Sbjct: 259 FFQNLMTAYYA 269


>gi|167586116|ref|ZP_02378504.1| DNA polymerase III subunit delta [Burkholderia ubonensis Bu]
          Length = 368

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 111/296 (37%), Gaps = 15/296 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L  E  ++ +          F+   ++ +E   + S       + SLF +
Sbjct: 19  LYTVFGDEPLLAQEACDRIRAAARAAG---FTERSVHTVERGFDWSLLLGATQAMSLFGE 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV-LA 139
            ++I   I +    K+  D L+ +   N  + ++++    +              +  +A
Sbjct: 76  HQLIELRIPSGKPGKEGADALKALAAANNPDALVLVTLPRLDAATQKSAWFTALLNGGVA 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLSSY 194
           +   P ++  L + I + L +  + ++     + A Q +   + G+ +A+  E+QKL   
Sbjct: 136 LKIDPVDRAQLPNWIGQRLAMQGQRVAAGDDGRRALQFIAERVEGNLLAAHQEIQKLGL- 194

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 ++ + V D + +     + ++  A + G       + D           ++   
Sbjct: 195 LYPQGALSFEQVHDAVLNVARYDVFKLNEAMLAGDAARLARMIDGLKGEGEAIVLVMWAV 254

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +++ + L +I      +      ++++    +   +  ++  +L    +  + + L
Sbjct: 255 VEELRTLLRIKRGV-AAGKPLATLLRENR--VWGPRERLVGPALGRVTEAALEKAL 307


>gi|222112429|ref|YP_002554693.1| DNA polymerase iii subunit delta [Acidovorax ebreus TPSY]
 gi|221731873|gb|ACM34693.1| DNA polymerase III, delta subunit [Acidovorax ebreus TPSY]
          Length = 348

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 95/301 (31%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +  L  E ++  +       +   S   +       + S       S SLF
Sbjct: 17  RPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSFTVAGAHF--DWSGVLAAGGSLSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I+ I   +    K     L+++      N   + ++    + K             
Sbjct: 75  ADKQIVEIRIPSGKPGKDGAAALQQMAAAAPGNDSTLTVVVLPRLDKATRTGAWFAALEA 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQK 190
               +   P  +  L   I + L    + +      +   Q     + G+ +A+  E+QK
Sbjct: 135 HGATVQIDPVERAQLPAWIAQRLAAQGQRVVAGEEGQRTLQFFADRVEGNLLAAHQEIQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+     +  +T   V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPEGELTWTQVEAAVLNVARYDVFKLSEAVLSGQVARVQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + L+++             + +     +   K  + +  L   +   +   L
Sbjct: 254 HWALAEDIRALKRVKDAMNAGKPLPMALRENR---VWGAKERLFERLLPQASDAALARLL 310

Query: 311 H 311
            
Sbjct: 311 Q 311


>gi|160942606|ref|ZP_02089851.1| hypothetical protein FAEPRAM212_00080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446085|gb|EDP23088.1| hypothetical protein FAEPRAM212_00080 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103510|emb|CBL01054.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii
           SL3/3]
          Length = 342

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 114/332 (34%), Gaps = 25/332 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ FY S++ L+ + +    + +S    +  +++   A E+++          + S F 
Sbjct: 16  PVYYFYSSERYLVRQAVAAAVRVLSADSDEDATILDGAAPELEQ----LIMAAGTISFFG 71

Query: 82  KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133
            ++++++  +         L+E+   + ++ N + ++      +  +IK     +K+   
Sbjct: 72  TRRVVVLPEIDPAAYGSKDLDELCSTLSSLENAVAVLGSVFPLERGKIKLGKQAQKL--- 128

Query: 134 FTSVLAISCYPDNKI-----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                AI  Y +         L +L+ E       ++   A   LL   G D     NE+
Sbjct: 129 QAQCKAIG-YTEELAKPRPFELKNLMMERAKAQGATLPDGAATALLERCGEDPFLLENEV 187

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL +       ++   V ++   +    + E+I          A       L  +    
Sbjct: 188 DKLCALS-GYQTVSASMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPI 246

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVR 307
           A+    +  +  L ++ +       ++  + +    K      +   + +   +    + 
Sbjct: 247 AITAAMIGSYVDLYRVKLGA-AKRKNYSAVHKDFGYKGSDYRLKRSAETA-AHYTLPQLE 304

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             L  +       + +    + ++   +  +A
Sbjct: 305 ACLQVLLELDQSLKSQPVAAQTLLETALCRLA 336


>gi|145636943|ref|ZP_01792607.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH]
 gi|145269801|gb|EDK09740.1| DNA polymerase III subunit delta [Haemophilus influenzae PittHH]
          Length = 344

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 116/318 (36%), Gaps = 26/318 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133
            K+I+ +        +    L+E+I     + ++I++         L K  EK       
Sbjct: 76  SKQILSLNLPENFTALFQKNLQELISVLHKDVLLILQV------AKLTKAIEKQTWFIIL 129

Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + I+C      +L   ++            EA Q L  +   + +A +  LQ 
Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKAMGLDADNEAIQQLCYSYENNLLALKQALQL 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      D  +    V  ++  + +    + I+A + GK   A  +     A  +    L
Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248

Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305
           L    ++   L ++      I     +  ++I  + ++  I   +R +   +++      
Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308

Query: 306 VRETLHKIDHRIHLARKK 323
           + E + ++ +   LA+++
Sbjct: 309 LYEIIQELANIERLAKQE 326


>gi|167763092|ref|ZP_02435219.1| hypothetical protein BACSTE_01459 [Bacteroides stercoris ATCC
           43183]
 gi|167699432|gb|EDS16011.1| hypothetical protein BACSTE_01459 [Bacteroides stercoris ATCC
           43183]
          Length = 339

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 115/326 (35%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++   G +   I  + +    N+       F+L V+   ++  +++   N      + 
Sbjct: 21  RPIYYLMGEEPYYIDLISDYITDNVLNETEKEFNLTVVYGADV--DVAAIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + K   L   AE   S +
Sbjct: 79  SEHQVVVVKEAQNIRNI-EELSYYLQKPLLSTILVICHKHGVLDKRKKL--AAEIEKSGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLE 197
                   +  L   I   +      +  +A  +L   +G D      EL+KL       
Sbjct: 136 LFESRKVKESQLPVFITSYMKRKGIDLEPKATSMLADFVGTDLSRLTGELEKLIITLPKG 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              +T + ++  I  +      E+ +A ++  +  A  +  +F  +    P    L    
Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDVLKANRIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E S       +           R  L  ++R++N     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKSEQGIAAFLGLKSP---WQSREYL-NAMRMYNGIKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338
               ++      L  + ++ + +  I
Sbjct: 312 TDAKSKGVGNPSLNDSDLLRELVFKI 337


>gi|262362598|gb|ACY59319.1| DNA polymerase III, delta subunit [Yersinia pestis D106004]
          Length = 272

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 72/194 (37%), Gaps = 4/194 (2%)

Query: 79  LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135
           +F+ ++ +L+   +      + + L ++      + ++I+++N++ K        +    
Sbjct: 1   MFASRQTLLLSFPDSGLTAPISEQLVKLSGLLHPDILLILRANKLTKAQENSAWFKALSK 60

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           + + +SC    +  L   +         ++   A Q+L     G+ +A    L++LS   
Sbjct: 61  NGVFVSCQTPEQAQLPRWVSARAKSLNLNVDDAAIQLLCYCYEGNLLALSQALERLSL-L 119

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D  +T   V+  + D         ++A + GK   A  +             LL    
Sbjct: 120 YPDGKLTLPKVEQAVNDAAHFTPYHWLDALLMGKSKRAWHILQQLQQEDSEPVILLRTVQ 179

Query: 256 QKFQLLEKIHIIKE 269
           ++  LL  +    E
Sbjct: 180 RELLLLLALKRQME 193


>gi|325283436|ref|YP_004255977.1| DNA polymerase III, delta subunit [Deinococcus proteolyticus MRP]
 gi|324315245|gb|ADY26360.1| DNA polymerase III, delta subunit [Deinococcus proteolyticus MRP]
          Length = 306

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 93/280 (33%), Gaps = 14/280 (5%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHI 113
            L  L+  E+     +    + + SLF    +I+  +LS  K   + L E++       +
Sbjct: 33  ELTRLSGEEVT--PESL-EPLLAPSLFGGGGVIV--DLSGVKPGKE-LMELLAGAQAPAL 86

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           ++    +     T  K+ E    ++     P     ++  +          + K+A   L
Sbjct: 87  VL----DTTAPPTRAKVYEAHGELIRSP-NPQRPGDVLGWLVPYAKKQGLKLEKDAASYL 141

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
               G D      EL KL  +      +  + V++++          +++A   G+   A
Sbjct: 142 ADVFGTDLTGIAGELNKLK-FLPAGTRLDAETVQEVVGRERAGDSFAMLDAATAGRPALA 200

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEK-IHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           +      L        LL   + ++ L+ + + ++ +      E              + 
Sbjct: 201 LEQLGRLLRGGEDPFRLLGAVVWQYSLIARCVGLLADSGGQVSEGAAASRLGAKPYPVKK 260

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIF 332
            L  + R  ++  +R  L +I       ++     + +  
Sbjct: 261 ALAVA-RRLDEAKIRRHLARIAGADLDLKRGHDPARTLQR 299


>gi|332529575|ref|ZP_08405531.1| DNA polymerase III subunit delta [Hylemonella gracilis ATCC 19624]
 gi|332040925|gb|EGI77295.1| DNA polymerase III subunit delta [Hylemonella gracilis ATCC 19624]
          Length = 348

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 107/302 (35%), Gaps = 22/302 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L  E  +  +           S+  +       + S       S SLF++
Sbjct: 19  LYTVHGDEALLQQEAADSIRAAARAEGFSERSVHTVAGAHF--DWSEVLAAGGSLSLFAQ 76

Query: 83  KKIILIENLST--EKKVLDCLEEIIIKNICN----HIIIIKSNEI--KKNNTLRKIAEKF 134
           ++++ I   S    K+    L++I      N     ++++   ++  KK      +    
Sbjct: 77  RQMVEIRVPSGKPGKEGSAALQQIAEAAQGNDSTLTLVLLPRLDMQTKKGAWFGAL---E 133

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQ 189
           +  + +   P  +  L   I + L    + +      + + Q     + G+ +A+  E+ 
Sbjct: 134 SFGVTVQVDPVERRALPAWIAQRLSAQGQRVEEGEAGQHSLQFFADRVEGNLLAAHQEIS 193

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL+        ++ + ++  + +     + ++  A + G+   A  + D   A       
Sbjct: 194 KLAL-LYPAGTLSFEQIESAVLNVARYDVFKLAEAVLAGQSARAQKMLDGLQAEGEAEVL 252

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
             +   +  + L+++             + ++    +   K  + + +L   ++  + + 
Sbjct: 253 AHYAIAEDIRGLKRVKDALGQGRPLPMALREQR---VWGAKEKLYERALPRLSETQLNDL 309

Query: 310 LH 311
           LH
Sbjct: 310 LH 311


>gi|15806263|ref|NP_294968.1| hypothetical protein DR_1244 [Deinococcus radiodurans R1]
 gi|6458988|gb|AAF10815.1|AE001972_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 300

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 16/260 (6%)

Query: 78  SLFSKKKIIL-IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           SLF    +++  E L  +K     L E++        ++ ++    +    +K  E   S
Sbjct: 51  SLFGDGGVVVDFEGLKPDK----ALLELLSSAPVTVAVLDEAPPATRLKLYQKAGEVIPS 106

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                  P     +   +          + ++A   L    G D      EL KL     
Sbjct: 107 AA-----PSKPGDVTGWVVTRAKKMGLRLERDAASYLAEVFGADLAGIAGELNKLELL-- 159

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +  + V+ I+          ++ A   G+   A++     L S      LL   + 
Sbjct: 160 -GGALNRERVQGIVGRDPPGDSFAMLGAATAGRPGEAVLQLRRLLGSGEDPFRLLGAVVW 218

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++ L+ +   + +      + +  +         +  L+ + R  +++ +R  L  I   
Sbjct: 219 QYSLIARTVGLLQEEGRVNDAVAAQRLGVKPFPAKKALEVA-RRLSESRIRSHLGAILDA 277

Query: 317 IHLARKKKYLEKNIIFQTIL 336
               ++   L+  +  + +L
Sbjct: 278 DLAMKR--GLDPQVALERLL 295


>gi|88802785|ref|ZP_01118312.1| hypothetical protein PI23P_09345 [Polaribacter irgensii 23-P]
 gi|88781643|gb|EAR12821.1| hypothetical protein PI23P_09345 [Polaribacter irgensii 23-P]
          Length = 333

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 97/261 (37%), Gaps = 4/261 (1%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++   G +   I ++ +  + N+       F+  V+   ++   I           + +
Sbjct: 18  PIYFLMGEESYYIDKISDYIEANVLGEAEKGFNQQVMYGRDVT--IEDIVAAAKRYPMMA 75

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           ++++++I+      + ++ L           ++++     K +   +       + L   
Sbjct: 76  ERQVLIIKEAQDLSRNIEKLISYAENPQPTTVLVLNYKYKKLDKRKKLHKVIAKTGLIFE 135

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                +  + D I ++L      I  +A  +L+  LG D     NEL KL     E+ +I
Sbjct: 136 SKKLYENQVSDWIRKALSAKNYKIEPKASLMLVEFLGTDLSKISNELDKLMLVLPEETII 195

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKFQ 259
           ++ H+++ I  +      E+  A  + +I  A  +  +F  +    P    +      F 
Sbjct: 196 SDVHIEENIGISKDFNNFELRKAVGEKQIVKANRIIKYFGENPKNNPLVITISLLNGYFT 255

Query: 260 LLEKIHIIKECSNISFEKIIQ 280
            L   H +K+ S  +  + + 
Sbjct: 256 QLLLFHGLKDKSKNNVARTLG 276


>gi|94984852|ref|YP_604216.1| DNA polymerase III, delta subunit [Deinococcus geothermalis DSM
           11300]
 gi|94555133|gb|ABF45047.1| DNA polymerase III, delta subunit [Deinococcus geothermalis DSM
           11300]
          Length = 312

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 5/201 (2%)

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
           P     +   + +        + ++A   L    G D      EL KL+     D  +T 
Sbjct: 109 PQKTSDVAGWVAQRARKTGLKLDRDAALYLAEVFGSDLTGIAGELNKLALL---DPPLTA 165

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+ ++          ++ A   G+   A+      LA+      LL   + ++ L+ +
Sbjct: 166 DLVRRVVGREPPGDTFALLGAATGGRPAEAVTQLRRLLATGEDPFKLLGAVVWQYNLVAR 225

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
              + +      E++  +         +  L+ + R  N+  +R  L +I       ++ 
Sbjct: 226 CVALLQEEGRVTEQVAAQRLGVKPYPAKKALEVA-RRLNEPKIRAHLGRILDADLGMKRG 284

Query: 324 KYLEKNIIFQTILYIAQTACK 344
                 +  + I+ ++     
Sbjct: 285 LDPATTL-ERLIVQLSVEDRC 304


>gi|294142173|ref|YP_003558151.1| DNA polymerase III subunit delta [Shewanella violacea DSS12]
 gi|293328642|dbj|BAJ03373.1| DNA polymerase III, delta subunit [Shewanella violacea DSS12]
          Length = 347

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 108/314 (34%), Gaps = 12/314 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           KNL      ++ +G D  L        +++  S  + +   L      E   N +   ++
Sbjct: 11  KNLSPLKQCYLIFGDDPWLCETSRSQIYQQAKSQGFEEKIQLSQ----ESGFNWNELVDQ 66

Query: 74  INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLFS +++I +         +     + ++     + ++II   ++    T  K  
Sbjct: 67  WQAMSLFSSRRVIELTLPQAKPGAEGGTIFQSLMQMANPDVLLIITGPKLAAEQTKSKWF 126

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +   +  + + C           ++  +     +++++AK +L +   G+ +A+ ++  +
Sbjct: 127 KTLDSQGIYVPCMTPEGSQFQRWLDNRIQHFALNLTRDAKDMLFSLYEGNLLAA-DQSLQ 185

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      +  I    +     D     + ++ +A +      A  +        +    +
Sbjct: 186 LLQLLSPNEQIDSPELSRYFEDQSRFSVFQLTDAMLNNSQDKAQHMLSQLKGEGVAMPII 245

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L G  ++  +L ++    E      + +  K    I   ++     +L   +   +   L
Sbjct: 246 LWGIFKELAILLQLKSALEI-REPLQPLWGKLR--IWDKRKPFYLAALNRLSLLQIETLL 302

Query: 311 HKIDHRIHLARKKK 324
                     +++ 
Sbjct: 303 ASASDIELKLKQQG 316


>gi|123969388|ref|YP_001010246.1| DNA polymerase III subunit delta [Prochlorococcus marinus str.
           AS9601]
 gi|123199498|gb|ABM71139.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 333

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 115/298 (38%), Gaps = 32/298 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D       I +             ++  LN  +  K ++  ++E+ +     
Sbjct: 2   PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DKQVNKAFDEVLTPPFGD 60

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             +I+ ++N     +  + +    E+I      N   I+++ +     +K    L+K+  
Sbjct: 61  GYRIVTLKNNPIFTAKNEDLRTKFEKIHDNIPQNTYFILQNTKKPDSRLKSTKFLQKLIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK  S+  I  Y   K  L D   E        I K A ++++ ++G D     N
Sbjct: 121 DNLAKEKSFSLPEIWDYEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176

Query: 187 ELQKLSSY----CLE-DILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           EL K  +Y      + +  +  +   VK I  D     I +II+  +Q  I  +++  ++
Sbjct: 177 ELAKAKTYLSALSGDSNSQLFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINESLIEINY 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293
            L    P+  L  G + + ++   I +     N + EKI         K I  ++R +
Sbjct: 236 SLQKGEPALKLNAGLISQIRIHTIIKLAVNSGNDNAEKICNLAGISNPKRIFFIRRKV 293


>gi|299529415|ref|ZP_07042853.1| DNA polymerase III subunit delta [Comamonas testosteroni S44]
 gi|298722664|gb|EFI63583.1| DNA polymerase III subunit delta [Comamonas testosteroni S44]
          Length = 348

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%)

Query: 76  STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131
           S SLF+ K+I  I I +    K     L+++      N   + +I    + K        
Sbjct: 70  SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATRTGAWF 129

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185
                + ++I   P  +  L   I + L +  + ++     +   Q     + G+ +A+ 
Sbjct: 130 GALDGNGVSIQIDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E+QKL+     +  ++   V+  + +     + ++  A + G++  ++ + D   A   
Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +     +  + ++++             +                    RIW    
Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290

Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329
               + ++  R+  AR  + L+  
Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313


>gi|264680696|ref|YP_003280606.1| DNA polymerase III subunit delta [Comamonas testosteroni CNB-2]
 gi|262211212|gb|ACY35310.1| DNA polymerase III, delta subunit [Comamonas testosteroni CNB-2]
          Length = 348

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 30/264 (11%)

Query: 76  STSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIA 131
           S SLF+ K+I  I I +    K     L+++      N   + +I    + K        
Sbjct: 70  SLSLFADKQILEIRIPSGKPGKDGSAALQQLASSAQGNDSTLTLISLPRLDKATRTGAWF 129

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASR 185
                + ++I   P  +  L   I + L +  + ++     +   Q     + G+ +A+ 
Sbjct: 130 GALDGNGVSIQIDPVERGALPHWIAQRLALQNQRVAAGEEGQRTLQFFADRVEGNLLAAH 189

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E+QKL+     +  ++   V+  + +     + ++  A + G++  ++ + D   A   
Sbjct: 190 QEIQKLAL-LHPEGELSLAQVEQAVLNVARYDVFKLSEAVLSGQVARSMRMLDGLQAEGE 248

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +     +  + ++++             +                    RIW    
Sbjct: 249 AEVLVHWALAEDIRNIKRVKDAMAGGKPLPMAL-----------------RENRIWGPK- 290

Query: 306 VRETLHKIDHRIHLARKKKYLEKN 329
               + ++  R+  AR  + L+  
Sbjct: 291 -ERLMERLLPRVSDARAAELLQAA 313


>gi|184155087|ref|YP_001843427.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227514787|ref|ZP_03944836.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|260663631|ref|ZP_05864520.1| DNA polymerase III, delta subunit [Lactobacillus fermentum
           28-3-CHN]
 gi|183226431|dbj|BAG26947.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086835|gb|EEI22147.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|260551857|gb|EEX24972.1| DNA polymerase III, delta subunit [Lactobacillus fermentum
           28-3-CHN]
 gi|299783044|gb|ADJ41042.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 342

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 96/261 (36%), Gaps = 19/261 (7%)

Query: 78  SLFSKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSN--EIKKNNT 126
             F +++++++          +    K+  + L E +       ++++ +   ++     
Sbjct: 70  PFFGERRLVILNKPAFLTGGTSRGALKQDGEVLREYLKHPQPTTVLVLLAPYEKLDGRKG 129

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           + K  +K    ++ +   D       L+E+        + + A   L+     D      
Sbjct: 130 VVKDLKKLAVEVSAAP-LDEPRA-RRLVEQRFQADGYQLGRGAIDELVRRTNADYGKMMA 187

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            +  +     +D  +T+  V  ++  +    + +++ A +  +   A+ L    L S+  
Sbjct: 188 AVPVIELAVYQDKRVTDAAVAGLVPQSLDENVFDLVQAVLNREQVEAVRLYRELLESQQA 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +    + +F+LL +I  +     +S   +  + +  + P +  +  ++ R ++ + +
Sbjct: 248 PLQINAILVSQFRLLLQIK-VLSNRGLSQGTLAGQLK--VHPYRVKLGLQTARRFSMDDL 304

Query: 307 RET---LHKIDHRIHLARKKK 324
                 L + +  +   ++  
Sbjct: 305 SHAYLGLIRCERALKSTQQDP 325


>gi|148380920|ref|YP_001255461.1| DNA polymerase III, delta subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933191|ref|YP_001385228.1| DNA polymerase III subunit delta [Clostridium botulinum A str. ATCC
           19397]
 gi|153934875|ref|YP_001388697.1| DNA polymerase III subunit delta [Clostridium botulinum A str.
           Hall]
 gi|148290404|emb|CAL84531.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929235|gb|ABS34735.1| DNA polymerase III, delta subunit [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930789|gb|ABS36288.1| DNA polymerase III, delta subunit [Clostridium botulinum A str.
           Hall]
          Length = 343

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +   +         + V  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKRIIDSNINNDFKDLNYVQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYH 122

Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
               K + +  KI +       I+       +L   +E+      K I+K   +  +  +
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182

Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             + ++   NE++KL +Y + +  I ++H+K++        I ++IN   + K   AI +
Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   ++L  
Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298

Query: 297 SLRIWNKNLVRETLH 311
             + +    + +++ 
Sbjct: 299 QSKKFTLKQIEKSIE 313


>gi|302560705|ref|ZP_07313047.1| DNA polymerase III, delta subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302478323|gb|EFL41416.1| DNA polymerase III, delta subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 340

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 86/252 (34%), Gaps = 11/252 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ +        +  ++  +        ++++ +   K  
Sbjct: 66  PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGSPAEEITLVLLHAGGAKGK 124

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q+L+  +G D    
Sbjct: 125 GLLDAARKAGAREVACPKMTKPADRLAF-VRAEFRTTGRSATPEACQVLVDAIGSDLREL 183

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L      +  I E  V              + +  ++G+   A+    + L++ 
Sbjct: 184 ASAVTQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +        Q +  I  +          + ++      P K + +++ +R W  +
Sbjct: 242 VAPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 296

Query: 305 LVRETLHKIDHR 316
            V   L  +   
Sbjct: 297 GVAVALRAVAEA 308


>gi|238855240|ref|ZP_04645559.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 269-3]
 gi|260664600|ref|ZP_05865452.1| DNA polymerase III, delta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932467|ref|ZP_06337892.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1]
 gi|313471938|ref|ZP_07812430.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 1153]
 gi|238832132|gb|EEQ24450.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 269-3]
 gi|239529134|gb|EEQ68135.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 1153]
 gi|260561665|gb|EEX27637.1| DNA polymerase III, delta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303416|gb|EFA95593.1| DNA polymerase III, delta subunit [Lactobacillus jensenii 208-1]
          Length = 328

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 122/314 (38%), Gaps = 25/314 (7%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN  + +   + YG D  L   LI  +  N        F  + L  ++ + + +      
Sbjct: 7   KNSNVQNKNLLIYGEDAFLNDYLIRDYLNNS------EFKGLDLQRIDCENDGLDELLAS 60

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEI----IIKNICNHIIIIKSN--EIK 122
           +   SLFS++KII ++N       + KK+   + ++        + + I+I+++N   + 
Sbjct: 61  LTEASLFSQQKIIWVKNPIFLTGKSPKKLQANIAKLEKVFANLTLSDDIVIMQANYANLD 120

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K   + K++    + + +   P     +  +I+  +     SI++    +LL        
Sbjct: 121 KRKKITKLSLSAFNSVEVQFKPYE---VSGVIKAIIKDEGYSIAQNTLHLLLERSDQVMD 177

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            + +   KL     ++  IT + V++ +  +    I EI+++  +     ++   +  L 
Sbjct: 178 TALSNYLKLKLIADDNKKITLESVQNNVDLSLAQNIFEILSSAFKKNYQESLERLEDQLR 237

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE-SLRIW 301
                  +L  F  + +++    I+      S   I ++    I P +  + ++  + + 
Sbjct: 238 EGQNPVRILSVFENQLEVILSAKILLARKR-SEMDIGKELG--IHPYRVKLAKQTQVSVS 294

Query: 302 NKNLVRETLHKIDH 315
               +     K+D 
Sbjct: 295 KLKRLLLEAIKLDQ 308


>gi|325679259|ref|ZP_08158846.1| DNA polymerase III, delta subunit [Ruminococcus albus 8]
 gi|324109045|gb|EGC03274.1| DNA polymerase III, delta subunit [Ruminococcus albus 8]
          Length = 354

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++ FYG D   +          +        +        +   I    +   +  +F++
Sbjct: 21  LYYFYGHDAAAVESFTRWLINKLCPKDAQFMNFHKFEGKGLS--IPALLDACEALPMFAE 78

Query: 83  KKIILIENLSTE---KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVL 138
           + ++ I +L  E   K+  D L +I+ K      +II +  +      R + +K      
Sbjct: 79  RVVVAINDLRMEDLPKEDGDALRKILSKLSDTTTVIIYATGVDLYKNKRSLTDKNKRFCD 138

Query: 139 AISCYPD-------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
             + Y +           L   I  +L      I K   + L    G D    + E++KL
Sbjct: 139 HCAKYGEVCDFQYKTANELGKSIAAALQKKGCGIDKRTAEYLAELCGCDSAYIKQEIEKL 198

Query: 192 SSYCLEDILITEQHVKDII 210
           S++      +T + +  + 
Sbjct: 199 SAFANG-RAVTREDIDALC 216


>gi|269837243|ref|YP_003319471.1| DNA polymerase III, delta subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786506|gb|ACZ38649.1| DNA polymerase III, delta subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 340

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 31/260 (11%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + I +G+++  I E +   +       HDP  +         +++    +   S   F  
Sbjct: 9   ILILHGTNRLAIDERVQHLRA-----EHDPAGITTTVVERAAEHLGELRSACLSPGFFGA 63

Query: 83  KKIILIENL----------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            ++++  +L           T    ++ L  ++       ++I+  +EIK  +  R++  
Sbjct: 64  TRLVIARDLLVGGGGGRGRRTSADRVEALA-LLASVPETTVLIVAESEIKPADE-RELRS 121

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL--------------G 178
           K                L++ +         +I  E    LL  L               
Sbjct: 122 KVPGATIERHDVPRGRDLVEWVRTRARRYDATIEAETAAQLLEALFPTSWRAVARRDDVP 181

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D      E+ KL++       IT   V  ++ D     I  + +A + G +  A+   +
Sbjct: 182 PDLYRLDAEVAKLATAAGPSQEITRDLVGALVPDAEATNIWGLTDAIVAGDVAGAVREVE 241

Query: 239 FFLASKMPSHALLHGFLQKF 258
             LA+  P+  LL     +F
Sbjct: 242 RALATGTPAEMLLGQLASQF 261


>gi|212636653|ref|YP_002313178.1| DNA polymerase III subunit delta [Shewanella piezotolerans WP3]
 gi|212558137|gb|ACJ30591.1| DNA polymerase III, delta [Shewanella piezotolerans WP3]
          Length = 343

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 106/289 (36%), Gaps = 10/289 (3%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + +G D  L  +      +       D    + L   E   + +   ++  + SLFS ++
Sbjct: 20  LIFGDDPWLCDQSRTALHQIAKQQGFD--EKIQLT-QETGFSWNELIDQWQAMSLFSSRR 76

Query: 85  IILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAIS 141
           II +         +     + ++  +  + ++I+   ++    T  K  +      + + 
Sbjct: 77  IIELTLPTAKPGTEGSAMFQSLMQMDNPDVLLILTGPKLALEQTKSKWFKSLDAKGVYVP 136

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           C           ++  +     ++S++++++L A   G+ +A+   LQ L         I
Sbjct: 137 CITPEGAQFQRWLDGRINHYSLTLSRDSREMLFALYEGNLLAADQALQLLQLLS-PTAPI 195

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             + +     D     + ++ +A +  +   A  +     +  +    +L    ++  +L
Sbjct: 196 EPEQLSQYFEDQSRFSVFQLTDAMLSNQQDKAQHILSQLKSEGVAMPIILWSLFKELGVL 255

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
            ++    E +  + + +  K    I   ++ + Q++++  +   V   L
Sbjct: 256 LQLKT-AEVNGQALQGLWSKLR--IWDKRKPLYQQAIKRLSLAQVETLL 301


>gi|320354853|ref|YP_004196192.1| DNA polymerase III delta [Desulfobulbus propionicus DSM 2032]
 gi|320123355|gb|ADW18901.1| DNA polymerase III delta [Desulfobulbus propionicus DSM 2032]
          Length = 456

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRK-----------IAEKFTSVLAISCYPDNKIHLM 151
            +      ++ +I+ + E+ K   L K             E      A     + K  L 
Sbjct: 187 ALAAGLPASNFLILLAEEVDKRKKLFKQLKDGQTVVDLSVESGAGAKA---QKEQKAVLH 243

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
           +L+ ++L    K+++     +L+  +G   +A   EL+K+ +Y  E   I    +  ++ 
Sbjct: 244 ELVRKTLAEQGKTLAPGLIDLLVERVGFHPVALVMELRKVMAYVGERRQIDHADIDLLVG 303

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T    + E+  A   G     +++ D    + +   A++       + L     + E  
Sbjct: 304 RTRQEALFELTTALAAGNREQTLVIGDRLQENGIHPLAVVATLRNFVRNLLLCRALLEQP 363

Query: 272 NISFEKIIQKT 282
           +I F+  +   
Sbjct: 364 DIRFQPTMSAA 374


>gi|319956132|ref|YP_004167395.1| DNA polymerase iii delta [Nitratifractor salsuginis DSM 16511]
 gi|319418536|gb|ADV45646.1| DNA polymerase III delta [Nitratifractor salsuginis DSM 16511]
          Length = 325

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 116/335 (34%), Gaps = 20/335 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q+  + L       + YG +  LI E I +++K +        S  +L     + + 
Sbjct: 5   EFEQRLKEGLP---NAVLLYGDNAYLIEETIERYRKELDA------SETLLAMYHDEYDF 55

Query: 68  STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
               + ++ +SLF     +LI  +    KK LD L  +  KN  N+ +     E +    
Sbjct: 56  ERARSYLSQSSLFGGTNFLLIRRDKKIPKKELDTLIALTQKNPDNYFLFDFRGEARDAKG 115

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           ++    +    + +  +  N    + ++          I   A   LL  L  +   +  
Sbjct: 116 MQSSFPEKKGGIWVRFFEPNPREGVAILRRKAEALGLQIDDYALNHLLTLLENNLALAAK 175

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL+KLS        ++ + +  ++  +  L +E+++               +  L     
Sbjct: 176 ELEKLSIL---QCPVSTKEIDRLVYSSAPLAVEKLLVDLF--NKKPIDETLERLLDLGAN 230

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESLR--IWNK 303
            + +L         +   H       ++  K I   +       ++  L   ++   W K
Sbjct: 231 EYEILRATQFFVHQIFLFHAYIRIHGVADSKAILGYKLPKHVEQQKAALSARIKPATWIK 290

Query: 304 --NLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
             + +  +  ++       R+ +     I  Q++L
Sbjct: 291 IHDHLLSSELQLKKSRSDYRETELYGVLIRLQSLL 325


>gi|168179399|ref|ZP_02614063.1| DNA polymerase III, delta subunit [Clostridium botulinum NCTC 2916]
 gi|182669577|gb|EDT81553.1| DNA polymerase III, delta subunit [Clostridium botulinum NCTC 2916]
          Length = 343

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +   +         + V  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKRIIDSNINNDFKDLNYVQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
               K + +  KI +       I+       +L   +E+      K I+K   +  +  +
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182

Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             + ++   NE++KL +Y + +  I ++H+K++        I ++IN   + K   AI +
Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   ++L  
Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298

Query: 297 SLRIWNKNLVRETLH 311
             + +    + +++ 
Sbjct: 299 QSKKFTLKQIEKSIE 313


>gi|239931347|ref|ZP_04688300.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 329

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 87/252 (34%), Gaps = 11/252 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ +        +  ++  +        ++++ +   K  
Sbjct: 55  PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 113

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 114 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRTTGRSATPEACQALVDAIGSDLREL 172

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L      +  I E  V              + +  ++G+   A+    + L++ 
Sbjct: 173 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 230

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+   +         + ++      P K + +++ +R W  +
Sbjct: 231 VAPVLITSALAQGVRAIGKLQSAR---GGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 285

Query: 305 LVRETLHKIDHR 316
            V   L  +   
Sbjct: 286 GVAVALRAVAEA 297


>gi|38234340|ref|NP_940107.1| hypothetical protein DIP1769 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200603|emb|CAE50299.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 324

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 28/297 (9%)

Query: 22  FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V +  G D+ L  E         I+ T      +  L A E+  +      ++ S SLF
Sbjct: 7   PVHLVVGDDEFL-AERARHSIIAAINKTIGSDVPVTTLRAGEVNASE---LIQLTSPSLF 62

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNH--IIIIKSNE------IKKNNTLRKIAE 132
            + +II++ N+    K    L   +  +      +II+ S        + K + + ++ E
Sbjct: 63  GEDRIIVLTNMEDAGKEPAELVLNVAVDPAPGIYLIIVHSGGGRQKALVPKLSKISQVHE 122

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                             +  +           + +    LL  +G D     + + +L 
Sbjct: 123 ANKL---------KPKDRVGWVTNEFKRHGVRPTPDVVHALLEGVGSDLRELASAIGQLV 173

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                +  +T   V+D       +   ++ +    G+   A+  A   L   +   AL  
Sbjct: 174 --ADNNGDVTLATVRDYYVGVAEVSGFDVADLACSGQTQRAVASARRALQLGVSPVALAA 231

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
               K   + +++  +    I   K+  +   +   +++    +  R+W  N V + 
Sbjct: 232 ALSMKVSAIARLYSTR--GRIDSRKLAGELGMHPFVVEKTA--KVARMWTGNAVSQA 284


>gi|289548078|ref|YP_003473066.1| DNA polymerase III subunit delta [Thermocrinis albus DSM 14484]
 gi|289181695|gb|ADC88939.1| DNA polymerase III, delta subunit [Thermocrinis albus DSM 14484]
          Length = 345

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 88/258 (34%), Gaps = 32/258 (12%)

Query: 41  FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK--KIILIENLSTEKKVL 98
             K          SL VL   E+   +  F N++  T+LF  K  +I++++N        
Sbjct: 28  LVKTFLEKLSRIASLRVLWGDELT--LEDFLNQLGETNLFEGKSHEIVVVKNG------- 78

Query: 99  DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD------------- 145
              EE++ K     +++  +  +KK      + +     L    Y               
Sbjct: 79  ---EEVLKKLKDPKLVLRIARNLKKKKVFFVVGKVDKRQLEKPPYQTIGEVGDVIEAKKL 135

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   + DL++         I ++A   LL     + +  + E+ KL+ Y      IT + 
Sbjct: 136 NSKKVKDLVKRRFEKEGIQIDEDALNYLLEAFSYNLMMLKTEVDKLTLY---GKRITLED 192

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ +   +    I + + A     +  A++  D      +    +         LL    
Sbjct: 193 VRRVCVPSGEGSIFDFLEAFFTRNVEKALVSLDTLYRYGVHPLLIQKSLANLVILLYT-- 250

Query: 266 IIKECSNISFEKIIQKTE 283
            ++       ++ ++K  
Sbjct: 251 AVRLSGGKDMDETLRKLG 268


>gi|238021488|ref|ZP_04601914.1| hypothetical protein GCWU000324_01388 [Kingella oralis ATCC 51147]
 gi|237868468|gb|EEP69474.1| hypothetical protein GCWU000324_01388 [Kingella oralis ATCC 51147]
          Length = 336

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 106/322 (32%), Gaps = 9/322 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L  E ++              +           + +      +S  LF+
Sbjct: 19  PLYVIHGEEDLLRIEALDSI--RAVAKQRGYLNRESYTVENANFDWNEVLVNADSAGLFA 76

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I +    K   + L+++      + + +I   ++++  T  K          
Sbjct: 77  DLKLLEIHIPSGKVGKNGGEALQQLAENLPRDTVTLIVLPKLERAQTQAKWFAALGKHGT 136

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +     +   L   I   L          A  +    + G+ +A++ E+ KL+    + 
Sbjct: 137 VLEAKAVSSNALPAWINARLQQHGLEAEAAAIALFAERVEGNLLAAKQEVDKLALLFPQG 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LI+ Q  ++ + +     + ++  A + G +     L D   A       LL    +  
Sbjct: 197 HLISIQDAQESVANVARFDVFQLAAAWMGGNVRRTAHLLDALAADDEEPVLLLWAVAEDV 256

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L ++         + + +  +    +   K+    ++ R      + + L        
Sbjct: 257 RTLIRLSAAF-KQGKTVQAVRNELR--LWGDKQQYASQAARRLTVPRLMDALKTCAQIDR 313

Query: 319 LAR-KKKYLEKNIIFQTILYIA 339
             +  +    +  + Q ++ +A
Sbjct: 314 QIKGAEAGDARAALRQLVMQLA 335


>gi|291439721|ref|ZP_06579111.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342616|gb|EFE69572.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 337

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 87/252 (34%), Gaps = 11/252 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ +        +  ++  +        ++++ +   K  
Sbjct: 63  PGTLA-ELTSPSLFAERKVVVVRDAQDLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGK 121

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+  +G D    
Sbjct: 122 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRTTGRSATPEACQALVDAIGSDLREL 180

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L      +  I E  V              + +  ++G+   A+    + L++ 
Sbjct: 181 ASAVSQLV--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+   +         + ++      P K + +++ +R W  +
Sbjct: 239 VAPVLITSALAQGVRAIGKLQSAR---GGRPGDLARELGMP--PWKIDRVRQQMRGWTPD 293

Query: 305 LVRETLHKIDHR 316
            V   L  +   
Sbjct: 294 GVAVALRAVAEA 305


>gi|134095831|ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimonas arsenicoxydans]
 gi|133739734|emb|CAL62785.1| DNA polymerase III, delta subunit [Herminiimonas arsenicoxydans]
          Length = 338

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 99/294 (33%), Gaps = 14/294 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++    +  L  E  ++ ++           ++V++                S SLF  
Sbjct: 19  LYVITSDEHLLALEAADKIRQTARAQGFSEREVLVVDRSF---KWGELLAANQSQSLFGD 75

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSV 137
           KK+I   I      +     L++       +++ +I   ++    +        ++ +  
Sbjct: 76  KKLIELRIPTGKPGRDGGKALQDYAASLSPDNVTLITLPKLDWATQKAAWVASLQQASVF 135

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + I      +  L   +   L    +S  +     +   + G+ +A+  E+QKL+     
Sbjct: 136 IDIP--LVERAQLPAWLGVRLAAQGQSADRACLDFIAERVEGNLLAAHQEIQKLAL-LYP 192

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ++ + V D + +     + ++  A + G     + + +           +L    ++
Sbjct: 193 AGPLSFEQVHDAVLNVARYDVFKLNEAMLSGDTARLVRMLEGLQGEGEALPLVLWAVAEE 252

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
            + L K+            ++ ++    I   +  +++ +LR      +   L 
Sbjct: 253 IRTLLKLKSGM-AQGRPLSQLTKEHR--IWGPRERLIEPALRRLKLATLESALQ 303


>gi|294673295|ref|YP_003573911.1| DNA polymerase III subunit delta [Prevotella ruminicola 23]
 gi|294473919|gb|ADE83308.1| DNA polymerase III, delta subunit [Prevotella ruminicola 23]
          Length = 330

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 115/306 (37%), Gaps = 14/306 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I ++ +    +        F+  V+   ++  N S   +      + +
Sbjct: 11  PVYYLMGDESYYIDKIADYIADHALRPEERDFNQTVVFGSDV--NASQIADLARRYPMMA 68

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSNEIKKNNTLRKIAEKFTSVL 138
           ++++++++     K   + LE    + + + ++++         + +   K     +  +
Sbjct: 69  ERQVVIVKEAQNIKN-TEALERYFAQPMASTVLVMCHKNGKVDGRKSGYVKAI--KSHGI 125

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLE 197
                      L   IE  L   Q  I  ++ Q++  N+G D      EL K + S   E
Sbjct: 126 LFESMKLKDRELPGFIENYLKKRQIRIDAKSVQMIAENIGADLSRLTGELDKVIISLPEE 185

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
           + ++T Q V++ I  +      E+ +A +   ++ A  +  +F  +      ++ L    
Sbjct: 186 NRVVTPQVVEEQIGVSKEFNGFELRDAIVNRNVFKANQIIKYFDENPKAGSIYSFLPLLF 245

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             FQ L  +      +N S E + +  E       ++ +   +R ++   V + + K+  
Sbjct: 246 NYFQNL--MIAFYAPNNKSQEGVAEWLEFKNPWQAKDYMT-GMRNYSGMKVMQIISKMRE 302

Query: 316 RIHLAR 321
               ++
Sbjct: 303 IDAKSK 308


>gi|300118685|ref|ZP_07056413.1| DNA polymerase III subunit delta [Bacillus cereus SJ1]
 gi|298723934|gb|EFI64648.1| DNA polymerase III subunit delta [Bacillus cereus SJ1]
          Length = 194

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   I      G   I   A  +LL  +G +      E+ KL+ Y      IT + V 
Sbjct: 4   QDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITPKLVA 63

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           +++  +    +  +    ++  I  A+ + D     +     LL   + +F+LL +   +
Sbjct: 64  ELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---V 120

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327
           KE     + +    +   + P +  +     + ++   +++ + ++    + + K   ++
Sbjct: 121 KELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMD 179

Query: 328 KNIIFQTIL 336
           K ++ +  L
Sbjct: 180 KKLVLEFFL 188


>gi|226355912|ref|YP_002785652.1| DNA polymerase III subunit delta [Deinococcus deserti VCD115]
 gi|226317902|gb|ACO45898.1| putative DNA polymerase III, delta subunit [Deinococcus deserti
           VCD115]
          Length = 300

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 100/304 (32%), Gaps = 20/304 (6%)

Query: 39  NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL-IENLSTEKKV 97
              + ++     +P  L  L   ++            S  LF    +I+ +E +  +K  
Sbjct: 15  ETLRDSLRARGLNPRELPRLGGEDVSAEGLRPH---LSPGLFGDGGVIVDLEGVKADK-- 69

Query: 98  LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
              L E++        ++ ++        L K+ EK   V+     P     +   + + 
Sbjct: 70  --ALLELLSGAPVTVALLDEAP---PATRL-KLYEKHGEVIPSPA-PVKPGDVTGWVVQR 122

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217
                  + ++A   L    G D      EL KL+        +T   V  ++       
Sbjct: 123 AKKAGLPLERDAAAYLGEVFGPDLAGIVGELNKLALLDGALDRVT---VHRVVGREPPGD 179

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
              ++ A   G+   A+      LAS      L+   + ++ L+ +   + +      E 
Sbjct: 180 SFAMLGAATAGRPGEALTQLRRLLASGEDPFKLMGAVIWQYSLVARCVALLQEEGRVTE- 238

Query: 278 IIQKTEKNIIP-MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            +      + P   +  L  + R  N+  +R  L +I        K+      ++ + I+
Sbjct: 239 ALAAQRLGVKPYPAKKALDVA-RRLNEARMRGHLSRILEADLGM-KRGLDAGTVLERLIV 296

Query: 337 YIAQ 340
            ++ 
Sbjct: 297 QLSV 300


>gi|268590408|ref|ZP_06124629.1| DNA polymerase III, delta subunit [Providencia rettgeri DSM 1131]
 gi|291314322|gb|EFE54775.1| DNA polymerase III, delta subunit [Providencia rettgeri DSM 1131]
          Length = 343

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 111/311 (35%), Gaps = 29/311 (9%)

Query: 24  FIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++ +G++  L+ E  +  +K      + + FS      LE   +    ++   + SLF+ 
Sbjct: 21  YLIWGNEPLLLQESQDAIRKAAQEQGFEEHFSFS----LEQNTDWDEIFSLCQALSLFAS 76

Query: 83  KKII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT----- 135
           ++ +  L+        + + L ++      + +       + + + L K  E        
Sbjct: 77  RQTLTLLLPENGPNAAMAEKLNQLAQLLHSDLL------LVLRGHKLTKAQENSAWFKAI 130

Query: 136 --SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               + ISC       L   + +     + S+  EA Q+L     G+ +     L++LS 
Sbjct: 131 SQDAIYISCLTPEYQRLPQWVSKRAYSMRLSLETEANQLLCYCYEGNLLGLAQALERLSL 190

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               D  +T   V+  + D+        ++A + GK   +  + +      +    LL  
Sbjct: 191 -LYPDGKLTYPRVESAVNDSAHFTPYHWVDALLAGKSRRSWHILEQLQQEDIEPVILLRS 249

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKT--EKNIIPMKRNILQESLRIWNKNLVRETLH 311
             +   LL  +         S    ++    +  +   +R +L E+L+    + ++  L 
Sbjct: 250 IQRDLMLLITL------KRQSATTALKTLFDQHKVWQNRRGVLTEALQRLTLHQLQSALM 303

Query: 312 KIDHRIHLARK 322
            +       ++
Sbjct: 304 LLTQAEINIKQ 314


>gi|320010881|gb|ADW05731.1| DNA polymerase III, delta subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 329

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 95/276 (34%), Gaps = 13/276 (4%)

Query: 33  LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS 92
           L+ +   Q     +        +  L   ++Q    T   E+ S SLF+++K++++ N  
Sbjct: 24  LLLDRAVQHVVAAARAADSDTDVRDLTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQ 80

Query: 93  T-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150
                 +  ++  +        ++++ +   K  + L    +     +A          L
Sbjct: 81  DLSADTVKDVKAYLGAPAEEITLVLLHAGGAKGKSLLDAARKAGAREVACPKTTKPAERL 140

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
              +        +S + EA Q L+ ++G D     + + +L      +  I E  V    
Sbjct: 141 SF-VRSEFRALGRSATPEACQALVDSIGSDLRELASAVSQLV--ADVEGTIDEAVVGRYY 197

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
                     + +  ++G+   A+    + L++ +    +        Q +  I  +   
Sbjct: 198 TGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVAPVLITSALA---QGVRAIGKLSSA 254

Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
                  + ++      P K + +++ +R W  + V
Sbjct: 255 RGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 288


>gi|330469614|ref|YP_004407357.1| DNA polymerase III subunit delta [Verrucosispora maris AB-18-032]
 gi|328812585|gb|AEB46757.1| DNA polymerase III, delta subunit [Verrucosispora maris AB-18-032]
          Length = 314

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 8/242 (3%)

Query: 71  WNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            +E+ S SLF  ++++++ +     K ++  L         +  +I++     K      
Sbjct: 44  IDEMLSPSLFGGRRVLVLRSGQDARKDLVAALLAYAKHPDPDVQLIVQHLGAAKGKAFAD 103

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             +   + +  +         +  + +         + +A + L+A +G D         
Sbjct: 104 GLKAAGAHIMPAAKLKGHRDRVAFVRDEFRRAGGRCTDDAAEALIAAVGNDLRELAAACA 163

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +L      D  I    V         +    + +AT+ G +  A+    + L   +    
Sbjct: 164 QLI--ADTDGRIGADTVARYYRGRVEVSGFTVADATMVGDLPGALEALRWALHVGVDPVP 221

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +          +  +  +      S  ++         P K    Q   R W    + + 
Sbjct: 222 IADALA---DGIRTVARVASAGRGSPYQLASSLGMP--PWKVERAQRQARGWTPEGLVQA 276

Query: 310 LH 311
           + 
Sbjct: 277 MQ 278


>gi|78780124|ref|YP_398236.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9312]
 gi|78713623|gb|ABB50800.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9312]
          Length = 333

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 125/331 (37%), Gaps = 37/331 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D       I +             ++  LN  +  + I+  ++EI +     
Sbjct: 2   PIQILWGNDLNAQNTFIKKLIDKEVSKEWKEINVTNLNGDD-DEQINKAFDEILTPPFGD 60

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             +I+ ++N     +  + +    E+I      N   I+++ +     +K    L+K+  
Sbjct: 61  GSRIVTLKNNPIFTTKNEDLRTKFEKIHDNIPTNTYFILQNTKKPDSRLKSTKFLQKLIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK  S+  I  Y   K      +E+S       I K A ++++ ++G D     N
Sbjct: 121 NNLAKEKSFSLPEIWDYEGQKR----YLEDSANAMNIKIDKNAAELIIDSVGNDSFKLIN 176

Query: 187 ELQKLSSY-----CLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           EL K  +Y        +  I  +   VK I  D     I +II+  +Q  I  +++  ++
Sbjct: 177 ELAKAKTYLSAVASDSNSQIFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINKSLIEINY 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQ 295
            L    P+  L  G + + ++   I +     N + EKI   +     K I  +++    
Sbjct: 236 SLQKGEPALRLNAGLISQIRIHTIIKLAVNSGNYNVEKICNLSGISNPKRIFFIQKK--- 292

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
             ++  ++  +   +  +     L +K    
Sbjct: 293 --VKNISQEYLINLMSNLLDIESLLKKGNNP 321


>gi|153005310|ref|YP_001379635.1| DNA polymerase III delta [Anaeromyxobacter sp. Fw109-5]
 gi|152028883|gb|ABS26651.1| DNA polymerase III delta [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 13/273 (4%)

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKN-ICNHIII 115
            ++   +  ++       ++  +    +  +  +L   K     L+  + K     H+++
Sbjct: 148 RVDHAALAADLGVPEATYDAAFVEGAARFAVERDLKVAKDDASALDAALEKGFARGHVLV 207

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQKSISKEAK 170
           + + ++     L K        + I    +         L  ++   L    K + +  +
Sbjct: 208 VAAGKVDGKLPLVKKLAAAGRRVTIQLEKEGTWDAQRLVLGPVLASLLAGTGKRVDRGGE 267

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             L A +G D     +E+ KL++Y  +  +I  + V  ++          + NA     +
Sbjct: 268 ARLAALVGEDARTLASEVAKLAAYVGDRKVIGAEDVDAVVTRVASDPFFALGNAIEARDL 327

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLL----EKIHIIKECSNISFEKIIQKTEKNI 286
             A+ + D  +A       LL       + +    E+         I   +  +     +
Sbjct: 328 PQALGVLDRSIADGASPFMLLGSLASAVRRMIVERERARRAVGDRRIGSAREWEAEVFPL 387

Query: 287 IPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           +P      ++    W K    +   +      L
Sbjct: 388 VPEDEAKGKKPFGFWMK---YQASTRFSRAELL 417


>gi|226229319|ref|YP_002763425.1| putative DNA polymerase III delta subunit [Gemmatimonas aurantiaca
           T-27]
 gi|226092510|dbj|BAH40955.1| putative DNA polymerase III delta subunit [Gemmatimonas aurantiaca
           T-27]
          Length = 385

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 112/353 (31%), Gaps = 43/353 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+  +G D  L    I              F+  +  A +I  +  T  + +N+  + +
Sbjct: 29  PVYYLHGDDDYLKDGAIRDLLDAAIDPSTRDFNSEMRRAGDI--DAETLGSLLNTPPMLA 86

Query: 82  KKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           +++ +++ +  + +K     L+  + +   + ++++ S    K +T   + E  TS+   
Sbjct: 87  ERRALVLRDVTALKKAARAQLDRYLARPASDTLLLLVSPAGSKVDT--ALVEASTSLAFT 144

Query: 141 SCYPDNKIHLMDLIEESLLIG-QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197
              P+        I           I+ +A ++L   +G D      EL K +SY L   
Sbjct: 145 PLTPERVR---RWITHHAGTALNIDIAADAAELLQQAVGNDLHLLAAELDKCASYVLGAQ 201

Query: 198 ---------------------DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
                                   I    V  ++       + ++++A  +     AI L
Sbjct: 202 DAAGTTGTASDHASNAAPDITRATIDADAVSAVVGVRRGETVADLLDAVARQDAAVAITL 261

Query: 237 ADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECS---NISFEKIIQKTEKNIIPMKRN 292
               L   K+    ++     +   L      ++     N   ++     ++      R 
Sbjct: 262 VGHVLGQPKVTGVQIVMMLSTQAFALSFGRARRDAGVPTNRLPQEYFAFLKETGGFPGRP 321

Query: 293 ------ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL-EKNIIFQTILYI 338
                    +    W++      L  +       ++      + I+   IL +
Sbjct: 322 WGDAASAWTKVTERWSRAACDRALRLLLEADMALKETTVSNAEQILMSLILGL 374


>gi|255535034|ref|YP_003095405.1| DNA polymerase III delta subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341230|gb|ACU07343.1| DNA polymerase III delta subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 345

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 92/263 (34%), Gaps = 12/263 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFS-LVVLNALEIQKNISTFWNEINSTSLF 80
            ++ F+G +   I   +  F+ ++       F+  VV        ++ +         + 
Sbjct: 18  PIYFFHGEEPYYIDAAVKSFENDVLDEDEKAFNQTVVYGKDTTFSDVLSL---ARQFPMM 74

Query: 81  SKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FT 135
             +++I+++     K V   L+ L+  +   + + +++I     K +   RK   K    
Sbjct: 75  GDRQVIILKEAQEIKIVEKELEALKVYVQNPVPSTLLVIAYKYKKIDA--RKAFAKTLSK 132

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           + +           +   I++ +             +L   LG D     NEL+KL    
Sbjct: 133 NKMLFLSEKMYDNEVPRWIDQQIRNLGLRTKPNIPALLSEYLGTDLSRISNELRKLKMIL 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGF 254
            +  ++ E+ ++  I  +    I E+  A        A+ +A F   S K     ++ G 
Sbjct: 193 NDTDILDEKIIETHIGISKDFNIFELTKALSNRDEAKAMRVAHFLGKSPKQNPFEMMMGS 252

Query: 255 LQKFQLLEKIHIIKECSNISFEK 277
           L  F     I+      N    +
Sbjct: 253 LYSFFSNLIIYHTMAGQNPKAIQ 275


>gi|291444503|ref|ZP_06583893.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291347450|gb|EFE74354.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 334

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 89/249 (35%), Gaps = 13/249 (5%)

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIII 115
           L   ++Q    T   E+ S SLF+++K++++ N        +  ++  +   +    +++
Sbjct: 55  LTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITLVL 111

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           + +   K    L    +     +A          L   +        +S + EA Q L+ 
Sbjct: 112 LHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQALVD 170

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           ++G D     + + +L      +  I E  V              + +  ++G+   A+ 
Sbjct: 171 SIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALE 228

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
              + L++ +P   +        Q +  I  +          + ++      P K + ++
Sbjct: 229 ALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVR 283

Query: 296 ESLRIWNKN 304
           + +R W  +
Sbjct: 284 QQMRGWTPD 292


>gi|228987575|ref|ZP_04147692.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772149|gb|EEM20598.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 245

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 87/239 (36%), Gaps = 4/239 (1%)

Query: 98  LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
           +  LEE I +     I++  +   K +   +       +   +         +   I   
Sbjct: 5   IKILEEYIGEPSPFSILVFVAPYEKLDERKKITKLLKKTADVVEANAMQVQDVQKWIVAR 64

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217
                  I   A  +LL  +G +      E+ KL+ Y      IT + V +++  +    
Sbjct: 65  ADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITPKLVAELVPKSVEQN 124

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
           +  +    ++  I  A+ + D     +     LL   + +F+LL +   +KE     + +
Sbjct: 125 VFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---VKELQQRGYGQ 181

Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
               +   + P +  +     + ++   +++ + ++    + + K   ++K ++ +  L
Sbjct: 182 NQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMDKKLVLEFFL 239


>gi|227503087|ref|ZP_03933136.1| DNA polymerase III delta subunit [Corynebacterium accolens ATCC
           49725]
 gi|227076148|gb|EEI14111.1| DNA polymerase III delta subunit [Corynebacterium accolens ATCC
           49725]
          Length = 322

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 111/337 (32%), Gaps = 35/337 (10%)

Query: 22  FVFIFYGSDKGLIFELIN-QFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            V +  G D+ L  E       K  +    +   L+ L A E+ +       E  S SLF
Sbjct: 6   PVHLILGDDEFL-TERARHTIHKAATEGEGNRPELMTLKASEVSEGE---ILEATSPSLF 61

Query: 81  SKKKIILIENLS-TEKKVLDCLEEIIIKN-ICNHIIIIKS------------NEIKKNNT 126
              ++I+I +     K+V+D +            ++++ S             E+     
Sbjct: 62  GDNRVIVITDCERAGKEVVDIILRACANPAPGMTMVVVYSVAAKTLKKKKKAPELV--AK 119

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           LRKIAE        S YP+    L               + +    +L  +G D     +
Sbjct: 120 LRKIAEVHE---VFSLYPNE---LGQWATREFASHGVRPTPDVVHAVLDGVGSDLRELAS 173

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            + +L         +T++ V++       +   +I +A + G++  A+      L     
Sbjct: 174 AISQLV--ADTGGNVTQEAVRNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGAS 231

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             A+      K   + +++  +        +        ++ M + +     R W  + +
Sbjct: 232 PVAIAAALANKVGAVARLYSARGDQYTLSSQT--GLAPYVVKMTQPVA----RRWTADAI 285

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
              +  +       + +    +  +   +  +A+ A 
Sbjct: 286 TAAVILVSELDAAVKGQGGEPEFAVEAAVKRVAELAR 322


>gi|145634091|ref|ZP_01789802.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA]
 gi|148826433|ref|YP_001291186.1| DNA polymerase III subunit delta [Haemophilus influenzae PittEE]
 gi|229845974|ref|ZP_04466086.1| DNA polymerase III subunit delta [Haemophilus influenzae 7P49H1]
 gi|145268535|gb|EDK08528.1| DNA polymerase III subunit delta [Haemophilus influenzae PittAA]
 gi|148716593|gb|ABQ98803.1| DNA polymerase III subunit delta [Haemophilus influenzae PittEE]
 gi|229810978|gb|EEP46695.1| DNA polymerase III subunit delta [Haemophilus influenzae 7P49H1]
 gi|309973581|gb|ADO96782.1| DNA polymerase III subunit delta [Haemophilus influenzae R2846]
          Length = 344

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 118/318 (37%), Gaps = 26/318 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q + +       S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQVDS---QTDWAQLIESCQSIGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK------- 133
            K+I+ +        +L   L+E+I     + ++I++         L K  EK       
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLHKDVLLILQV------AKLTKAIEKQTWFIIL 129

Query: 134 ---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                + + I+C      +L   ++    +       EA Q L  +   + +A +  LQ 
Sbjct: 130 NQYEPNTILINCQTPTVENLPRWVKNRTKVMGLDADNEAIQQLCYSYENNLLALKQALQL 189

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L      D  +    V  ++  + +    + I+A + GK   A  +     A  +    L
Sbjct: 190 LDL-LYPDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQPVIL 248

Query: 251 LHGFLQKFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNL 305
           L    ++   L ++      I     +  ++I  + ++  I   +R +   +++      
Sbjct: 249 LRTLQRELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQT 308

Query: 306 VRETLHKIDHRIHLARKK 323
           + E + ++ +   LA+++
Sbjct: 309 LYEIIQELANIERLAKQE 326


>gi|297571560|ref|YP_003697334.1| DNA polymerase III subunit delta [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931907|gb|ADH92715.1| DNA polymerase III, delta subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 321

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 102/313 (32%), Gaps = 14/313 (4%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST- 93
            E      K  + +      +  ++A             I S SLF +++++++ NL   
Sbjct: 22  AERAITLLKRQARSIDPNTEVTDIDAQTY--GPGYLS-AIASPSLFGERRLLIVPNLENL 78

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153
                D +   + +   + ++I++ N   K   +    +K            N+      
Sbjct: 79  NAAFQDDILTYLTQPEPDVVLILQHNGGVKGKKVLTALKKHNIPTTTISAVKNQRDKTQA 138

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   +    + ++ EA   L+  +G D       +Q+L +      LI E +V       
Sbjct: 139 VMADIRAAGRKMTPEAIGALIEAVGSDLRELLAAVQQLLADVHG--LIGEDNVHTYFAGR 196

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
                  + +A I G I  A+ LA   LA+     A+L           K+  +      
Sbjct: 197 IEAKGFNVADALIVGNIGEAVKLARHALATGASPTAILGAIAS------KLRTMAHILGQ 250

Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333
             + I    + +I+P      +  LR W    +   +  I       +      +  + +
Sbjct: 251 RSDGI--DVKVSIVPWMAERAKRDLRGWTPAGLAVAISAIAKADADVKGGSRDPEYALER 308

Query: 334 TILYIAQTACKNN 346
            IL + +      
Sbjct: 309 GILDVGRARKIRG 321


>gi|212715891|ref|ZP_03324019.1| hypothetical protein BIFCAT_00799 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661258|gb|EEB21833.1| hypothetical protein BIFCAT_00799 [Bifidobacterium catenulatum DSM
           16992]
          Length = 324

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 114/330 (34%), Gaps = 25/330 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG D  L  E   +  ++ S   H     + L+A          ++E  S SL S++ 
Sbjct: 11  LIYGGDPYL-NEQTVRDLRHQSQRKHPDAETIELDATNADHYA---FDEAVSPSLLSERS 66

Query: 85  IILIENLSTEKK-----VLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVL 138
           I+++ NL          ++   ++ +       I+I +    IK    + ++ +      
Sbjct: 67  IVIVSNLQNADDRLGETMVAYCKQAVNNPTEASIVICQHEGGIKGKRLIDQLTKAGAVKE 126

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIASRNELQKLSSYC 195
           A++        L   I +      + I   A Q L+A LG   G+  A   +L     + 
Sbjct: 127 AVADLKKADAKLNFTI-QCFERRNRRIEPMAAQQLVAVLGDKTGELAAMAGQL----CFD 181

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  IT + V   +     +    + +  + G+  +AI+     +       AL+    
Sbjct: 182 FDDNPITLERVNQYLTANPQVDGFRVADLALSGRSADAIIAMRTSVEQGTAPIALIGALA 241

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  + + S +    I +   K    + +N     L  W  + +R  +  +  
Sbjct: 242 ------MKLRTMAKASAVRSGTISEAEAKTNSWVLKNA-TRQLSGWTSDGMRRCIQMLAW 294

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKN 345
               ++         + + I  I+     N
Sbjct: 295 ADEQSKTNGSDPVYALERAIELISNKGRTN 324


>gi|317477015|ref|ZP_07936257.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316906808|gb|EFV28520.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 339

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 115/326 (35%), Gaps = 17/326 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             V+   G +   I  L +    NI       F+L V+   ++  +++T  N      + 
Sbjct: 21  RPVYYLMGEEPYYIDLLSDYITDNILNETEKEFNLTVMYGADV--DVATIINAAKRYPMM 78

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           S+ ++++++     + + + L   + K + + I++I  K   + +   L   AE   S +
Sbjct: 79  SEHQVVVVKEAQNIRNM-EELSYYLQKPLLSTILVICHKHGTLDRRKKL--AAEIEKSGI 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197
                      L   I   +      +  +A  +L   +G D      EL+KL     + 
Sbjct: 136 LFESKKVRDAQLPTFITSYMKRKGVDMDSKATSMLADFVGTDLSRLTGELEKLIITLPKS 195

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
              +T + ++  I  +      E+ +A ++  I  A  +  +F  +    P    L    
Sbjct: 196 QTRVTPEQIERNIGISKDYNNFELRSAIVEKDILKANKIIKYFEENPKTNPIQMTLSLLF 255

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             F  L   +   E +       I           R  L  ++R +N     + + +I +
Sbjct: 256 GFFSNLMLAYYAPEKTEQGIASFIGLKTP---WQSREYL-NAMRRYNGVKTMQIIGEIRY 311

Query: 316 RIHLAR--KKKYLEKN-IIFQTILYI 338
               ++      L  + ++ + I  I
Sbjct: 312 TDAKSKGVGNSSLNDSDLLRELIFKI 337


>gi|111018296|ref|YP_701268.1| DNA polymerase III delta subunit [Rhodococcus jostii RHA1]
 gi|110817826|gb|ABG93110.1| possible DNA polymerase III delta subunit [Rhodococcus jostii RHA1]
          Length = 535

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 14/295 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSLFSK 82
           +  G ++ L+ E       +      D  +   L    ++   +      E+ S SLF++
Sbjct: 222 LVLGDEEFLV-ERAVAQVISHVRANADVAAGADLPVNRLRAGDAGAAELAELLSPSLFAE 280

Query: 83  KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++++E  +   K  +  + +         ++++  +   +   +    EK    +   
Sbjct: 281 DRVVVLEAAAEAGKDAVALILDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKL-GAVVHP 339

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           C       L+  I          +S E  Q +   +G +         +L++       I
Sbjct: 340 CAKLKSGDLIGFIRGEFRTLGVRVSPEVVQSVFEGVGSNLRELAAACSQLTADTGGK--I 397

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+        +   ++ +  + G    AI    + +   +P   L          +
Sbjct: 398 DVAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALA---DAV 454

Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             I  +         ++  +         K   L +    W    V E L  +  
Sbjct: 455 HSIARVAPAGRGDPFRMASELGMPPWKIKKAQALAKG---WTPTSVGEALRIVAS 506


>gi|260903876|ref|ZP_05912198.1| DNA polymerase III, delta subunit [Brevibacterium linens BL2]
          Length = 327

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 15/296 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G++  LI    ++          DP   V  +A   Q           S SLFS
Sbjct: 17  PVVMISGNEPVLIRMAKDRIVAAARKK--DP-EEVEFDAAGYQGGELLM---AASPSLFS 70

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             K+I+++++    +  L      + +   + ++++      +   L K  E        
Sbjct: 71  TAKLIIVDSVEKCSEAFLADALAYLDEPNDDAVVLLLHGGGNRGAKLVKKIEANGFPRVD 130

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +    N+       +      ++ I +     L++ LG D       +++L      +  
Sbjct: 131 AAALKNESDRAKFAQGRFKAAKRQIDESGMAALMSALGADLSELNAGVEQLIEDT--EGT 188

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           IT Q V             ++ +A + G + +A+ L    L++      L+     K + 
Sbjct: 189 ITAQIVDQYYGGRVEATGFKVADAAVGGDVKSALSLLRHALSTGSDPVPLVAAVAMKLRG 248

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + K+      S     ++         P + +  +  +R WN+  + ++L      
Sbjct: 249 MAKVQGFSGSSGELAAELKMA------PWQVDRARREVRRWNEVALGQSLIAAAEA 298


>gi|182438775|ref|YP_001826494.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326779430|ref|ZP_08238695.1| DNA polymerase III, delta subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467291|dbj|BAG21811.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326659763|gb|EGE44609.1| DNA polymerase III, delta subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 328

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 89/251 (35%), Gaps = 14/251 (5%)

Query: 59  NALEIQKN---ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HI 113
           +  ++  +     T   E+ S SLF+++K++++ N        +  ++  +   +    +
Sbjct: 45  DVRDLASDQLQPGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITL 103

Query: 114 IIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           +++ +   K    L    +     +A          L   +        +S + EA Q L
Sbjct: 104 VLLHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQAL 162

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
           + ++G D     + + +L      +  I E  V              + +  ++G+   A
Sbjct: 163 VDSIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEA 220

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +    + L++ +P   +        Q +  I  +          + ++      P K + 
Sbjct: 221 LEALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDR 275

Query: 294 LQESLRIWNKN 304
           +++ +R W  +
Sbjct: 276 VRQQMRGWTPD 286


>gi|145630008|ref|ZP_01785790.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021]
 gi|144984289|gb|EDJ91712.1| DNA polymerase III subunit delta [Haemophilus influenzae R3021]
          Length = 344

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 119/312 (38%), Gaps = 14/312 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L+ E  +   +  +    D  + + +++   Q +         S  LF 
Sbjct: 19  RVYLLQGQDPLLLSETEDTICQVANQQGFDEKNTIQIDS---QTDWVQLIESCQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I+ +        +L   L+E+I     + ++I++  ++ K    +       +   +
Sbjct: 76  SKQILSLNLPENFTALLQKNLQELISVLNKDVLLILQVAKLTKAIEKQAWFIALNQYEPN 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V+ I+C      +L   ++            EA Q L  +   + +A +  LQ L     
Sbjct: 136 VILINCQTPTVENLPRWVKNRTKAMGLDADDEAIQQLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +    V  ++  + +    + I+A + GK   A  +     A  + S  LL    +
Sbjct: 195 PDHKLNYNRVISVVEQSSIFTPFQWIDALLMGKANRAKRILKGLQAEDVQSVILLRTLQR 254

Query: 257 KFQLLEKI----HIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLH 311
           +   L ++      I     +  ++I  + ++  I   +R +   +++      + E + 
Sbjct: 255 ELFTLLELTKPQQRIVTTEKLPTQQIKTEFDRLKIWQNRRPLFLSAIQRLTYQTLYEIIQ 314

Query: 312 KIDHRIHLARKK 323
           ++ +   LA+++
Sbjct: 315 ELANIERLAKQE 326


>gi|306836676|ref|ZP_07469641.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           accolens ATCC 49726]
 gi|304567448|gb|EFM43048.1| DNA-directed DNA polymerase III delta subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 322

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 111/336 (33%), Gaps = 33/336 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D+ L     +   K  +        L+ L A E+ +       E  S SLF 
Sbjct: 6   PVHLILGDDEFLTERARHTIHKAAAEGEATRPELMTLKASEVSEGE---ILEATSPSLFG 62

Query: 82  KKKIILIENLS-TEKKVLDCLEEIIIKN-ICNHIIIIKS------------NEIKKNNTL 127
             ++I+I +     K+V+D +    +       ++++ S             E+     L
Sbjct: 63  DNRVIVITDCERAGKEVVDIILRACVNPAPGMTMVVVYSVAAKTLKKKKKAPELV--AKL 120

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           RKIAE        S YP+    L               + +    +L  +G D     + 
Sbjct: 121 RKIAEVHE---VFSLYPNE---LGQWATREFASHGVRPTPDVVHAVLDGVGSDLRELASA 174

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           + +L         +T++ V++       +   +I +A + G++  A+      L      
Sbjct: 175 ISQLV--ADTGGNVTQEAVRNYYVGVAEVANWDIADAAVAGRVEAAVSTCRRALQLGASP 232

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A+      K   + +++  +        +        ++ M + +     R W  + + 
Sbjct: 233 VAIAAALANKVGAVARLYSARGDQYTLASQT--GLAPYVVKMTQPVA----RRWTADDIT 286

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             +  +       + +    +  +   +  IA+ A 
Sbjct: 287 AAVILVSELDAAVKGQGGEPEFAVEAAVKRIAELAR 322


>gi|257457472|ref|ZP_05622640.1| DNA polymerase III, delta subunit [Treponema vincentii ATCC 35580]
 gi|257445095|gb|EEV20170.1| DNA polymerase III, delta subunit [Treponema vincentii ATCC 35580]
          Length = 327

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 105/295 (35%), Gaps = 17/295 (5%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLD--CLEEIIIKNI--CNHIIIIKSNEIK 122
           IS   + + + SLF++ +  ++ N    KK  D   L + + +        I++ S+EI 
Sbjct: 41  ISVILDAVQNGSLFAEARFAVVRNAEAIKKKEDIHALTQWVEQTPAEDGAFIVLISDEIG 100

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
            +  +  +  K    +    + + K      +       + +I +EA ++LL  +  +  
Sbjct: 101 IDKKIEALVPKDHKKIFWELFENKKQE---WLRRFFAQSKINIEQEAIEVLLELVENNTE 157

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A +     +S +      +T + V+ ++          + +A     +  A+ +      
Sbjct: 158 ALKTACTHISLFFEPGTTLTAETVERLLAHNKEETPFTLFDALSNANLEYALNIRQKLTL 217

Query: 243 SK-MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SL 298
           SK      L+ G    F+ L   H + +   +    + +          +  +++   + 
Sbjct: 218 SKESSPVQLIAGLTYCFRRLRDWHTLAQTGGLDDFSLKKAG-----FTSKKAIEQYRRAS 272

Query: 299 RIWNKNLVRETLHKIDHRIHLARK-KKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
           R WN+  V   +  ++      R   + L   ++   +  I     +    Y  T
Sbjct: 273 RQWNEQTVHRIISLLNKTDMQIRAMGQELSGILLDACLYSIICNQGRELAAYSET 327


>gi|325859968|ref|ZP_08173095.1| DNA polymerase III, delta subunit [Prevotella denticola CRIS 18C-A]
 gi|325482494|gb|EGC85500.1| DNA polymerase III, delta subunit [Prevotella denticola CRIS 18C-A]
          Length = 341

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 104/287 (36%), Gaps = 24/287 (8%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++S +F             V++  G +   I  + +    ++       F+  +   
Sbjct: 13  MQDLKSRRFA-----------PVYMLMGDEAYYIDLISDYIADHVLSPEERDFNQTICFG 61

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++        +      + ++ ++I+++     + + + LE+ +   + + I++     
Sbjct: 62  SDVTA--VQVADMARRYPMMAEYQVIIVKEAQNVRSL-EALEKYLKNPVKSTILVWCHKN 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178
            K +   RK A      + +           L D I+  L     SI  +A Q++  ++G
Sbjct: 119 GKIDA--RKKAFGLAQAVGVVFESKKLRDYQLPDFIQGYLKKKNVSIDPKACQMIADHIG 176

Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     +EL K L S   + + +T + V+  I  +      E+ NA IQ   + A  + 
Sbjct: 177 TDLSRLASELDKVLISLPEDHLRVTPEVVEREIGVSKDFNAFELRNAIIQKDSFKANQIV 236

Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            +F ++         L      FQ L  +H        + E+ I   
Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNSEQDIAGA 280


>gi|160947264|ref|ZP_02094431.1| hypothetical protein PEPMIC_01197 [Parvimonas micra ATCC 33270]
 gi|158446398|gb|EDP23393.1| hypothetical protein PEPMIC_01197 [Parvimonas micra ATCC 33270]
          Length = 348

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 98/257 (38%), Gaps = 22/257 (8%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           + +++  G +  LI   +  FK+ I     D F +  +     + ++     +  +   F
Sbjct: 16  NGIYVLSGEEIFLIDRFVELFKEKIVSK--DFFDMNYIEYDFSKIDLQKLKIDCETAPFF 73

Query: 81  SKKKIILIEN-------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           S K++I++ +       +S  K   + + + I K     +++     +K +   R    K
Sbjct: 74  SNKRLIIVNDVNLSKNGISMYKNFFEEMYDYIDKIPNTTVLLFV---MKGSLAFRGKFYK 130

Query: 134 FTSVLA--ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-------GDRIAS 184
             S+L   I     N+I L   I++  ++    +     + ++  +G        +    
Sbjct: 131 QISILGHNIELIRFNEIELFKFIKKRFVLKNIEVKDIVLKYIIDRIGYLDSSREKNLYDV 190

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            NE+ KL        ++  + V +I+ D     I ++++   +    N+I +      S 
Sbjct: 191 ENEVNKL-LNSFSRNVLDFKDVDEILIDKFENSIFKLLDMISKKDYKNSIKILVELKKSG 249

Query: 245 MPSHALLHGFLQKFQLL 261
             S +  +  ++  + L
Sbjct: 250 EDSFSTFYMIVRYIRNL 266


>gi|225352046|ref|ZP_03743069.1| hypothetical protein BIFPSEUDO_03654 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157293|gb|EEG70632.1| hypothetical protein BIFPSEUDO_03654 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 325

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 25/320 (7%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
                +    + YG D  L  E   +  ++ +   H     + L+A          ++E 
Sbjct: 2   PKPSATTPFHLIYGGDPYL-NEQTVRDLRHQAQRKHPDAETIELDATNADHYA---FDEA 57

Query: 75  NSTSLFSKKKIILIENLSTEKKVLDCL-----EEIIIKNICNHIIIIK-SNEIKKNNTLR 128
            S SL S++ I+++ NL      L        ++ +       ++I +    IK    + 
Sbjct: 58  VSPSLLSERSIVIVSNLQNADDKLGETMVAYCKQAVNNPAEASVVICQHEGGIKGKRLID 117

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG---GDRIASR 185
           ++ +       ++     +  L   I +      + I   A Q L+A LG   G+  A  
Sbjct: 118 QLTKAGAVKETVADLKKAEAKLNFTI-QCFERRNRRIEPMAAQQLVAVLGDKTGELAAMA 176

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            +L     +  +D  IT + V   +     +    + +  + G+  +AI+     +    
Sbjct: 177 GQL----CFDFDDNPITLERVNQYLTANPQVDGFRVADLALSGRAADAIIAMRASIEQGT 232

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
              AL+           K+  + + S +    I +   K    + +N     L  W  + 
Sbjct: 233 APIALIGALA------MKLRTMAKASAVRSGTISEAEAKTNSWVLKNA-TRQLSGWTSDG 285

Query: 306 VRETLHKIDHRIHLARKKKY 325
           +R  +  +      ++    
Sbjct: 286 MRRCIQMLAWADEQSKTNGS 305


>gi|328955419|ref|YP_004372752.1| DNA polymerase III, delta subunit [Coriobacterium glomerans PW2]
 gi|328455743|gb|AEB06937.1| DNA polymerase III, delta subunit [Coriobacterium glomerans PW2]
          Length = 323

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 89/218 (40%), Gaps = 3/218 (1%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D+      + + K  + +     F+L   + +  ++++ +  + +N+  + +
Sbjct: 8   PGYLIIGADEVKRDIAVGRLKARLEMDGMADFNLDERD-MTKEQDVDSLISSLNTFPMDA 66

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++++       K + + L +         + ++ +  + ++  L K      +   I
Sbjct: 67  PFRLVILYGCDRLAKPMSEMLVDYFGDPAPTTVCLVIATSLSRSTRLHKAVSALGAQALI 126

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C    +  L   ++  +    K+++++A + L+   G       NEL+KL+    E   
Sbjct: 127 DCATKKRWELPGQVQSMMRRHGKTMTRQAAEELVGRSGLSTRMLDNELKKLARMT-EAPE 185

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
           I    V+ ++  T  +   ++++A     I  +I L  
Sbjct: 186 IGVADVERLVMRTAEVQPWDLLDALSARDIARSIELYQ 223


>gi|302345695|ref|YP_003814048.1| DNA polymerase III, delta subunit [Prevotella melaninogenica ATCC
           25845]
 gi|302149314|gb|ADK95576.1| DNA polymerase III, delta subunit [Prevotella melaninogenica ATCC
           25845]
          Length = 341

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 13/266 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I ++     +++       F+  +    ++        +      + +
Sbjct: 23  PIYMLMGEESYYIDQISGYISEHVLSPEERDFNQTICFGSDVTA--VQVADMARRYPMMA 80

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + ++I+++     + + + LE+ +   + + I++      K +   RK A      + + 
Sbjct: 81  EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDA--RKKAVGLAQAVGVV 137

Query: 142 CYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198
                     L D I+  L   + SI  +A QI+  ++G D     +EL K L S   ++
Sbjct: 138 FESKKLRDYQLPDFIQSYLKERKVSIDSKACQIIADHIGADLSRLTSELDKVLISLPADN 197

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256
           + +T + V+  I  +      E+ NA +Q   + A  +  +F  +         L     
Sbjct: 198 LRVTPEVVEKEIGVSKDFNTFELRNAIVQKDCFKANQIVKYFDNNPKAGSLYSFLPLLFS 257

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKT 282
            FQ L  +H        + E+ I   
Sbjct: 258 YFQSLMIVHY---SPRKNTEQDIAAA 280


>gi|212638668|ref|YP_002315188.1| DNA polymerase III subunit delta [Anoxybacillus flavithermus WK1]
 gi|212560148|gb|ACJ33203.1| DNA polymerase III, delta subunit [Anoxybacillus flavithermus WK1]
          Length = 305

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 103/297 (34%), Gaps = 24/297 (8%)

Query: 39  NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEK 95
            Q  +         +++   +  E    I     +  +   F ++KI++++    L+ EK
Sbjct: 6   EQIIRRTLSDEEREWNVSTYDCEET--PIEVALEDAETLPFFGERKIVIVKQPYFLTAEK 63

Query: 96  KV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF--TSVLAISCYPDNK 147
                   +  LE  I K      ++   +  K +   RK   K        I   P N+
Sbjct: 64  GKEKVEHDVKRLEAYIDKPAPFSSVMFVGSYEKLDE--RKKVTKALLKKAHVIVAKPLNE 121

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L   +      GQ  I+ +A  +LL   G D     NE++KL  +      IT   V+
Sbjct: 122 KELKQWV-----KGQCRIADDAIDVLLTLAGTDLATLANEIEKLMLFAEGRS-ITADDVR 175

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++  T    +  ++    +  I +A+      L        L+     +F+L+ ++  +
Sbjct: 176 LLVSRTLEQNVFVLVEQIAKRNITDALQTLQDLLRQNEEPIKLVALLASQFRLVYEVKEL 235

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
            +      ++ I      + P +  +       +++  +   L+ +    +  +   
Sbjct: 236 MKTG--YGQQQIASML-GVHPFRVKMAASYAGGFSEQQLMHILYDLAETDYALKSSA 289


>gi|288802702|ref|ZP_06408140.1| DNA polymerase III, delta subunit [Prevotella melaninogenica D18]
 gi|288334852|gb|EFC73289.1| DNA polymerase III, delta subunit [Prevotella melaninogenica D18]
          Length = 341

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 13/266 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I ++     +++       F+  +    ++        +      + +
Sbjct: 23  PIYMLMGEESYYIDQISGYIAEHVLSPEERDFNQTICFGSDVTA--VQVADMARRYPMMA 80

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + ++I+++     + + + LE+ +   + + I++      K +   RK A      + + 
Sbjct: 81  EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDA--RKKAVGLAQAVGVV 137

Query: 142 CYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLED 198
                     L D I+  L   + SI  +A QI+  ++G D     +EL K L S   ++
Sbjct: 138 FESKKLRDYQLPDFIQSYLKERKVSIDSKACQIIADHIGADLSRLTSELDKVLISLPADN 197

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQ 256
           + +T + V+  I  +      E+ NA +Q   + A  +  +F  +         L     
Sbjct: 198 LRVTPEVVEKEIGVSKDFNAFELRNAIVQKDCFKANQIVKYFDNNPKAGSLYSFLPLLFS 257

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKT 282
            FQ L  +H        + E+ I   
Sbjct: 258 YFQSLMIVHY---SPRKNTEQDIAAA 280


>gi|163752477|ref|ZP_02159666.1| DNA polymerase III, delta subunit [Shewanella benthica KT99]
 gi|161327621|gb|EDP98816.1| DNA polymerase III, delta subunit [Shewanella benthica KT99]
          Length = 346

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 110/314 (35%), Gaps = 12/314 (3%)

Query: 15  KNLFLSHFVFIFYGSDKGLIF-ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           +NL      ++ +G D  L        + +  S  + +   L      E   N +    +
Sbjct: 10  RNLSPLKQCYLIFGDDPWLCQTSRSQIYHQAKSQGFEEKIQLTQ----ETGFNWNELVEQ 65

Query: 74  INSTSLFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLFS +++I +         +     + ++     + ++I+   ++    T  K  
Sbjct: 66  WQAMSLFSSRRVIELTLPQAKPGAEGGAIFQSLMQMTNPDVLLILTGPKLAAEQTKSKWF 125

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +   +  + + C           +E  +     +++++AK +L +   G+ +A+ ++  +
Sbjct: 126 KTLDSQGIYVPCMTPEGSQFQRWLESRIQHFALNLTRDAKDMLFSLYEGNLLAA-DQSLQ 184

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L         I    +     D     + ++ +A +  +   A  +     A  +    +
Sbjct: 185 LLQLLSPSEQIDSPELSRYFEDQSRFSVFQLTDAMLNNRQDKAQHILCQLKAEGVAMPII 244

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L G  ++  +L ++   +E    S + +  K    I   ++ +   +L   +   +   L
Sbjct: 245 LWGIFKELAILLQLKSAQEAQ-KSLQGLWGKLR--IWDKRKPLYLAALNRLSLFQIEALL 301

Query: 311 HKIDHRIHLARKKK 324
                     +++ 
Sbjct: 302 ASASDIELRLKQQG 315


>gi|15894555|ref|NP_347904.1| DNA polymerase III subunit delta [Clostridium acetobutylicum ATCC
           824]
 gi|15024200|gb|AAK79244.1|AE007639_17 Uncharacterized protein, YQEN B.subtilis homolog [Clostridium
           acetobutylicum ATCC 824]
 gi|325508687|gb|ADZ20323.1| DNA polymerase III subunit delta [Clostridium acetobutylicum EA
           2018]
          Length = 343

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 112/276 (40%), Gaps = 20/276 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+I  G ++ L+ E IN+  K       +  +  V +  E++       N   +    S
Sbjct: 18  NVYIMCGFNEKLMKESINKILKKSISQDFESLNYSVFDGNEVEF--EDILNACETVPFMS 75

Query: 82  KKKIILIENLS-----------TEKKVLDCLEEIIIKNICNHIII---IKSNEIKKNNTL 127
           +K+++++                  K++  +E+ +     + I++   +  N  +K +  
Sbjct: 76  EKRMVVVYRAGFLNDNSSGSNKNSDKLIKDIEKYVPNVPKHCILVMYYVFDNTREKPSYR 135

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K  +K   V  +       +     +++      K I K       + +  +     NE
Sbjct: 136 VKKFDK--KVCVVEFSKLRGMQFQKKVKDVFAEKGKQIGKTELNYFCSRVENNMDIVYNE 193

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  Y LE   IT++ + +++       I  +++   Q K   AI + +  +   + +
Sbjct: 194 IEKLCCYTLE-KEITKESIDNLLQPNETDDIFNLVDYISQSKPEMAITVLNEIMYKGVKA 252

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           +++L+   ++F+L+  I I  E    S E ++++ +
Sbjct: 253 NSILYMVERQFKLMLSIKIGIENK-QSKEALVKELK 287


>gi|327313789|ref|YP_004329226.1| DNA polymerase III subunit delta [Prevotella denticola F0289]
 gi|326945332|gb|AEA21217.1| DNA polymerase III, delta subunit [Prevotella denticola F0289]
          Length = 341

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 104/287 (36%), Gaps = 24/287 (8%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++S +F             V++  G +   I  + +    ++       F+  +   
Sbjct: 13  MQDLKSRRFA-----------PVYMLMGDEAYYIDLISDYIADHVLSPEERDFNQTICFG 61

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            ++        +      + ++ ++I+++     + + + LE+ +   + + I++     
Sbjct: 62  SDVTA--VQVADMARRYPMMAEYQVIIVKEAQNVRSL-EALEKYLKNPVKSTILVWCHKN 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178
            K +   RK A      + +           L D I+  L     SI  +A Q++  ++G
Sbjct: 119 GKIDA--RKKAIGLAQAVGVVFESKKLRDYQLPDFIQGYLKKKNVSIDPKACQMIADHIG 176

Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     +EL K L S   + + +T + V+  I  +      E+ NA IQ   + A  + 
Sbjct: 177 TDLSRLASELDKVLISLPEDHLRVTPEVVEREIGVSKDFNAFELRNAIIQKDSFKANQIV 236

Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            +F ++         L      FQ L  +H        + E+ I   
Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNSEQDIAGA 280


>gi|328882390|emb|CCA55629.1| DNA polymerase III delta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 329

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             +   E+ S SLF+++K++++ N        +  ++  +   + +  ++++ +   K  
Sbjct: 56  PGSLA-ELTSPSLFAERKVLVVRNAQDLSADTIKDVKAYLDDPVEDISLVLLHAGGAKGK 114

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   + +      +S + EA Q L+ ++G D    
Sbjct: 115 GLLDAARKAGAREVACPKTTKPAERL-TFVRQEFRTLGRSATPEACQALVDSIGSDLREL 173

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L+     D  I E  V              I +  ++G+   A+    + L++ 
Sbjct: 174 ASAVAQLT--SDVDGTIDEAVVGRYYTGRAEASSFNIADRAVEGRTAEALEALRWSLSTG 231

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +        Q +  I  +          + ++      P K + +++ +R W  +
Sbjct: 232 VAPVLVTSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 286

Query: 305 LVRETLHKIDHR 316
            V   L  I   
Sbjct: 287 GVSLALRAIAEA 298


>gi|108761070|ref|YP_631018.1| DNA polymerase III subunit delta [Myxococcus xanthus DK 1622]
 gi|108464950|gb|ABF90135.1| DNA polymerase III, delta subunit [Myxococcus xanthus DK 1622]
          Length = 444

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 81/206 (39%), Gaps = 8/206 (3%)

Query: 89  ENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFTSVL---AISCYP 144
           E +S  +     L ++I K     H +++ ++++   N L K+A     V+     + + 
Sbjct: 169 ERISAPEGDASALLDLIQKGVPAGHALVLAASDMDAKNPLVKLAHDKGYVVERKVAARHK 228

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           D  + L D+ +E L   +K +   A   L   +GG+    ++EL+KL++Y      I   
Sbjct: 229 D--LDLTDIAKEFLAPFKKKLGPGALDELKERIGGNIRLLQSELEKLATYSEGP-AIERA 285

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            V  ++         E+  A  +     A+  A+  +     +  LL       + L + 
Sbjct: 286 DVAALVHHAREEEFFELSEALQKRDFGGALSYANDAMGQGTHALQLLGAVASIVRGLLES 345

Query: 265 HI-IKECSNISFEKIIQKTEKNIIPM 289
           H  +   +  +  +  +  E  + P 
Sbjct: 346 HEWLWRYAGGNPPRTAKDVEARVFPR 371



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+  E    +            V++  G +  L+ +  ++  K +        +L VL+A
Sbjct: 1   MSASEMDDVLASVKGGKVA--PVYLLVGEE-FLVRKGADELVKLLVPDAAMGLNLAVLDA 57

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIEN---LSTEKKVLDCL 101
                +      E+ +  LF  +K++L+ +   L+ +K   D L
Sbjct: 58  ----GSPREVAQELATLPLFPGRKVVLVRDPEFLAPKKGRGDAL 97


>gi|239941063|ref|ZP_04693000.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239987543|ref|ZP_04708207.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379]
          Length = 328

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 89/249 (35%), Gaps = 13/249 (5%)

Query: 58  LNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIII 115
           L   ++Q    T   E+ S SLF+++K++++ N        +  ++  +   +    +++
Sbjct: 49  LTPDQLQ--PGTLA-ELTSPSLFAERKVVIVRNAQDLSADTVKDVKAYLGAPVEEITLVL 105

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           + +   K    L    +     +A          L   +        +S + EA Q L+ 
Sbjct: 106 LHAGGAKGKGLLDAARKAGAREVACPKTTKPAERLSF-VRSEFRTHGRSATPEACQALVD 164

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           ++G D     + + +L      +  I E  V              + +  ++G+   A+ 
Sbjct: 165 SIGSDLRELASAVSQLI--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALE 222

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295
              + L++ +P   +        Q +  I  +          + ++      P K + ++
Sbjct: 223 ALRWSLSTGVPPVLITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVR 277

Query: 296 ESLRIWNKN 304
           + +R W  +
Sbjct: 278 QQMRGWTPD 286


>gi|311895989|dbj|BAJ28397.1| putative DNA polymerase III subunit delta [Kitasatospora setae
           KM-6054]
          Length = 331

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 10/285 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
                 E+ + SLF+++K+I++          +  ++  +        ++++ +   K  
Sbjct: 55  PGQLA-ELTTPSLFAERKVIVVRAAQDLSADSVKEVKAYLESPAEEVIMVLVHAGGAKGK 113

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A +        L   I        ++ S EA Q LL +LG D    
Sbjct: 114 GLLDAAKKAGAREVACAKLTKAGEKLAF-IRNEFRTLGRAASPEACQALLDSLGSDLREL 172

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
                +L+     +  I E  V             E+ +  + G+   A+    + LA  
Sbjct: 173 SAACSQLT--ADIEGPIDETAVAKYYSGRAEATGFEVADLAVTGRAAEALERLRWALAVG 230

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            P   + +      + +    +     N+    + ++      P K + +++ +R W  +
Sbjct: 231 QPPTGITYALASGVRSIG--RLASAGRNMRPGDLARELGMP--PWKIDRVRQQMRGWTGD 286

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349
            V   L  +       +         + + ++ +A+ +   +  Y
Sbjct: 287 GVAAALTAVAEADAAVKGGSDDPAYALERAVVAVARASRAGSRPY 331


>gi|330837534|ref|YP_004412175.1| DNA polymerase III delta [Spirochaeta coccoides DSM 17374]
 gi|329749437|gb|AEC02793.1| DNA polymerase III delta [Spirochaeta coccoides DSM 17374]
          Length = 356

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 112/318 (35%), Gaps = 24/318 (7%)

Query: 23  VFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
            +++ G + G        I            +   +   +   I          + ++ L
Sbjct: 8   AYLYLGPENGEKDAAVSRIRNALAGAHPALDEYLFIASKDDESIHG----LSEALTNSGL 63

Query: 80  FSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           FS    IL+   S  K   L  + + + +   +  I++ S+E + + TL+K+  K     
Sbjct: 64  FSDYSFILLRIASEAKVSTLQPVLDWLKEPTPDVTIVLTSDETRVSATLQKLVPKQNQQ- 122

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
             + Y   +      I++     +  IS+ A  ++L  +       +    +L+ Y  +D
Sbjct: 123 --TFYEMFENRKPQWIQDFFRSRRMGISRGATDLILTLVDNSTDELKEACARLADYLSQD 180

Query: 199 -----ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                  +TE+ V+  +  +  +    +     +G +  A++    ++ ++      L  
Sbjct: 181 SSAKHSSVTEEDVEAYLSFSQGVTAFSVFEHVARGNLNGALLTIHSYMDAEPNKLPQLLA 240

Query: 254 FLQ-KFQLLEKIHIIKECSNISFEKIIQKT---EKNI---IPMKRNILQESLRIWNKNLV 306
            +  + + L  +        ++ ++ +Q      K +       + + +E++R ++   +
Sbjct: 241 AMSWQMRRLLSL-SENLSQGMNEDEAMQSVVTYGKPVPIRNLKDKGLNKEAVRRYSPEDI 299

Query: 307 RETLHKIDHRIHLARKKK 324
           +  L  +       R   
Sbjct: 300 KTILVSLADWDRDIRSWP 317


>gi|302519012|ref|ZP_07271354.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB78]
 gi|302427907|gb|EFK99722.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB78]
          Length = 332

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 112/340 (32%), Gaps = 16/340 (4%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68
            + +   +      + +  G ++ LI +   +     +        +  L   ++Q    
Sbjct: 6   VMARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PG 62

Query: 69  TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNT 126
               E+ S SLF+++K++++ N        +  ++  +   +    +++  +   K    
Sbjct: 63  GLA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGL 121

Query: 127 LRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
           L     +      + C         +  +        +S + EA Q L+  +G D     
Sbjct: 122 LDAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELA 179

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             + +L+     +  I E  V              + +  ++G+   A+    + L++ +
Sbjct: 180 AAVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGV 237

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +        Q +  I  +          + ++      P K + +++ +R W  + 
Sbjct: 238 APVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDG 292

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
           V   L  +       +      +  + + I+ +A+ A   
Sbjct: 293 VSIALRAVAEADAGVKGGGDDPEYALEKAIVTVARAARSR 332


>gi|288575363|ref|ZP_06393663.1| DNA polymerase III, delta subunit [Neisseria mucosa ATCC 25996]
 gi|288567929|gb|EFC89489.1| DNA polymerase III, delta subunit [Neisseria mucosa ATCC 25996]
          Length = 306

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 6/175 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I +G +  L  E ++  +       +    +   +      +         S  LF+
Sbjct: 17  PLYIIHGEEDLLRIEALDTLRAAAKKQGYLNREVFTADNG---ADWDELLQSAGSAGLFA 73

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
             K+  I I N    K   D L+        + + +I   +++K  T  K          
Sbjct: 74  DLKLLEIHIPNGKPGKNGGDALQTFAEHLPEDTVSLILLPKLEKAQTQAKWFTALAAKGT 133

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +     +   L   I+  L      I  +A  +    + G+ +A+R E+ KL+ 
Sbjct: 134 VLEAKAISAQALPQWIKGRLKKVGLDIEPDALALFAERVEGNLLAARQEIDKLAL 188


>gi|295838948|ref|ZP_06825881.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB74]
 gi|197695504|gb|EDY42437.1| DNA polymerase III, delta subunit [Streptomyces sp. SPB74]
          Length = 333

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 112/340 (32%), Gaps = 16/340 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + +   +      + +  G ++ LI +   +     +        +  L   ++Q     
Sbjct: 7   MARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PGG 63

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +   +    +++  +   K    L
Sbjct: 64  LA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGLL 122

Query: 128 RKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                +      + C         +  +        +S + EA Q L+  +G D      
Sbjct: 123 DAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELAA 180

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            + +L+     +  I E  V              + +  ++G+   A+    + L++ + 
Sbjct: 181 AVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGVA 238

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +        Q +  I  +          + ++      P K + +++ +R W  + V
Sbjct: 239 PVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 293

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
              L  +       +      +  + + ++ IA+ A    
Sbjct: 294 SIALRAVAEADAGVKGGGDDPEYALEKAVVTIARAARSRR 333


>gi|167625142|ref|YP_001675436.1| DNA polymerase III subunit delta [Shewanella halifaxensis HAW-EB4]
 gi|167355164|gb|ABZ77777.1| DNA polymerase III, delta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 343

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 104/304 (34%), Gaps = 12/304 (3%)

Query: 25  IFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           + +G D  L  +     F +     + +   L         +     + +  + SLFS +
Sbjct: 20  LIFGDDPWLCEQSRAVIFAEAKRQGFEEKIQLTQETGFSWNE----LFEQWQAMSLFSSR 75

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II +         +    L+ ++  +  + ++I+   ++    T  K  +      + +
Sbjct: 76  RIIELTLPQAKPGTEGSTMLQSLMQMDNPDVLLILTGPKLAAEQTKSKWFKVLDAKGIYV 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++  +     S++++ +++L A   G+ +A+   LQ L         
Sbjct: 136 PCTTPEGAQFQRWLDGRINHYGLSMARDPREMLFALYEGNLLAADQALQLLQLLS-PTAP 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I  + +     D     + ++ +A +  +   A  +     +  +    +L    ++  +
Sbjct: 195 IDCEQLSQYFEDQSRFSVFQLTDAMLSNQQDKAQHILSQLKSEGVAMPIILWSLFKELTV 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L ++    + +    + +  K    I   ++ I Q +L       V   L          
Sbjct: 255 LLQLKA-AQNNPEPLQGVWSKLR--IWDKRKPIYQNALNRLELTHVETLLAGASSIELKL 311

Query: 321 RKKK 324
           +++ 
Sbjct: 312 KQQG 315


>gi|261880299|ref|ZP_06006726.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332988|gb|EFA43774.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 342

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 94/258 (36%), Gaps = 12/258 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G +   I ++ +    ++       F   V+   ++  N +   +      + +
Sbjct: 24  PIYVLMGEESYYIDQISDYILNHVLSPDQQAFDQTVVFGADV--NAAQVADLAMQYPMMA 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
            +K+I+++     +   + LE+         +++I  K+  I +       AE+    + 
Sbjct: 82  SRKVIVVKEAQGMRSF-EKLEKYAENPQPKTVLVICYKNGTINRRTKFMAAAER--VGVV 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197
                     L   I+  L      I +++  ++   +G D    ++EL KL    L   
Sbjct: 139 FESKKLKDWQLPRHIQMYLATQNVGIDEKSASMIAGCIGADLNRLQSELDKL-LIALPEK 197

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFL 255
           D  IT + V+  I  +      E+ +A +   I+ A  +  +F ++      ++ L    
Sbjct: 198 DRRITPEMVEKNIGVSKDFNAFELRSAIVNKDIFKANQIIKYFDSNPKAGSVYSFLPLLF 257

Query: 256 QKFQLLEKIHIIKECSNI 273
             FQ L   +      + 
Sbjct: 258 NFFQNLMIAYYAPNRGDK 275


>gi|238755063|ref|ZP_04616411.1| DNA polymerase III subunit delta [Yersinia ruckeri ATCC 29473]
 gi|238706767|gb|EEP99136.1| DNA polymerase III subunit delta [Yersinia ruckeri ATCC 29473]
          Length = 314

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 71/201 (35%), Gaps = 4/201 (1%)

Query: 74  INSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
             + SLF+ ++  +++  +      + + L ++      + ++++++N++ K        
Sbjct: 38  CQAMSLFANRQTLLLVFPDTGLTAAMSEQLVKLTTLLHPDILLMLRANKLTKAQENSAWF 97

Query: 132 EK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +        ++C    +  L   ++         +   A Q+L     G+ +A    L +
Sbjct: 98  KALSPHGALVNCLAPEQAQLPRWVQTRAKSIHLDVDDAAVQLLCYCYEGNLLALSQALAR 157

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           LS     D  +T   V+  + D         ++A + GK   A  +             L
Sbjct: 158 LSL-LYPDGKLTLPRVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPIIL 216

Query: 251 LHGFLQKFQLLEKIHIIKECS 271
           L    ++  LL  +      S
Sbjct: 217 LRTVQRELLLLLTLKRQMANS 237


>gi|317471377|ref|ZP_07930731.1| hypothetical protein HMPREF1011_01079 [Anaerostipes sp. 3_2_56FAA]
 gi|316901128|gb|EFV23088.1| hypothetical protein HMPREF1011_01079 [Anaerostipes sp. 3_2_56FAA]
          Length = 173

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 4/172 (2%)

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           ++++  Q+ L   G D    +NEL+KL SY     +I  + ++ +        I  ++ A
Sbjct: 1   MTQKDIQLFLYKTGQDMFTIKNELEKLISYTKGREVIGAEDLEALTTAQTTNQIFVMLEA 60

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
             + +    + L    +  K     +L   +++   L +   + +      E   +    
Sbjct: 61  IAKKQRDTVLKLYYDLIELKESPFGILALLVRQCNQLLQTQSLLKAGKSQGEMAKELKVP 120

Query: 285 NIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
                 +  L++ +R++ +  +   + K         K   +   I  + +L
Sbjct: 121 P-FVAGK--LKQQVRLFKREEL-YEMIKKCAATDEGIKTGKITDRIGVELLL 168


>gi|39938502|ref|NP_950268.1| DNA polymerase III delta subunit [Onion yellows phytoplasma OY-M]
 gi|39721611|dbj|BAD04101.1| DNA polymerase III delta subunit [Onion yellows phytoplasma OY-M]
          Length = 323

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 12/238 (5%)

Query: 70  FWNEINSTSLFSK--KKIILIENLST--EKKVLDC--LEEIIIKNICNHIIIIKSNEIKK 123
              E+ +TSL     KK++L+++     +KK  +   L   +     N  +   + +  K
Sbjct: 49  LQKELQTTSLIESAWKKVVLVDHSEILFQKKPQEMAFLISYLQNPYNNLDLYFFAEKTTK 108

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
            + ++KI EK    L  +     K      I E        I  +A Q L++    +   
Sbjct: 109 ASEVQKIWEK--YCLCKTTNSLEKKDFFKYIMEVFQKDGFQIDTKAIQELVSKTNYNLYL 166

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E+ K+  +   D  IT Q V+ I        I  +IN  ++    +A  +       
Sbjct: 167 LHQEITKIKLFQSNDKNITCQLVQKINAFKENDNIFGLINLFLKQNYIDAYQMYQTLKTQ 226

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIP--MKRNILQES 297
           K+ +  +++    K + L  +  + +      E  K++  ++  +     +  +++  
Sbjct: 227 KINAFHVINQLTHKIKELLLVKEMLQQKKTPEEVQKVLPVSQGKVFFLMKEAKLIETQ 284


>gi|309388914|gb|ADO76794.1| DNA polymerase III, delta subunit [Halanaerobium praevalens DSM
           2228]
          Length = 335

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 123/310 (39%), Gaps = 22/310 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  Y  +  L  +   +F +         F+L  +N  +  + +   ++ + +  + ++
Sbjct: 16  LYYIYAENTYLRNKFKKEFMQKFIPHSIRDFNLAKVNPGD--EYLKRLYSAVQTPPMGAE 73

Query: 83  KKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           K+ I I +      +    +E +++     +  + ++ + +N++ K    RK  +    +
Sbjct: 74  KRYI-ISDFDDSDSLNQKQKEKLLEIFKGLSTSSTLVFLTANKLDKR---RKFYQALKEI 129

Query: 138 LAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                +   +   L   I E      K I +++ +IL            +E++K+ +   
Sbjct: 130 AEYQEFEPPRYRDLDKWIMERFQKYNKKIDRQSLKILENMFSNKLEILNSEIEKIITRYP 189

Query: 197 EDILITEQHVKDIICDTH---VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           +   I+   +K+II          I + ++     K   A++     L   +    LL  
Sbjct: 190 DKDKISYYDLKEIISREKFIQDEEIFKFLDLIGDKKTDQALLTLKEMLNKGVYPLYLLTM 249

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              + +LL ++    + ++ + +KI  K  K+  P     ++++++  ++N  ++ L +I
Sbjct: 250 LKNQIELLMQVKFYSQYTH-NNKKIAAKLNKHPYP-----VKKAMKR-SRNFSQKELEQI 302

Query: 314 DHRIHLARKK 323
              I  A + 
Sbjct: 303 LAEILRANRH 312


>gi|154509306|ref|ZP_02044948.1| hypothetical protein ACTODO_01831 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798940|gb|EDN81360.1| hypothetical protein ACTODO_01831 [Actinomyces odontolyticus ATCC
           17982]
          Length = 306

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 108/323 (33%), Gaps = 21/323 (6%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G +  L+   ++Q +        DP +L   +            + I S SLF + +
Sbjct: 2   LIKGPEGLLVDRALDQLRALAHEA--DP-NLERTDINAATYQAGQL-DVIASPSLFGESR 57

Query: 85  IILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I +L T    + + L         +  + +       +   +     K    +  + 
Sbjct: 58  MVIIRDLETMSDALANDLIAYAGAPAPDVWMFLAHPGGNARGKKVIDTITKAKWPVIPAE 117

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              N    + LI   +   ++ +  EA+Q L+  LG D  A    L +L         IT
Sbjct: 118 PLKNDRDKLALIASDVRAARRQMDTEAQQALVDALGNDPRAMAGALAQLL--SDVSGRIT 175

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+            ++ +A + G    A+MLA    A+ +    L+     KF+ + 
Sbjct: 176 LEDVRRYQAGRVEATGYDVADAAVAGNSAKALMLARHAFATGIAPQLLVSALAMKFRAMA 235

Query: 263 KIHIIKECSN-ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           K+ I    S+       + +                LR W+   +      I       +
Sbjct: 236 KVSIGGSASSLKMAPWQVDRAR------------WELRGWSDASLAGAFGAIATADAETK 283

Query: 322 KKKYLEKNIIFQTILYIAQTACK 344
                 +  I + I+ I +   +
Sbjct: 284 GASRDPQRAIEKAIITICRLRGR 306


>gi|295099649|emb|CBK88738.1| DNA polymerase III, delta subunit [Eubacterium cylindroides T2-87]
          Length = 268

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 88/213 (41%), Gaps = 9/213 (4%)

Query: 78  SLFSKKKIILIENL---STEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAE 132
           S+F   K+I+IEN    S++      ++  I +  N  + I++      K +   + + E
Sbjct: 7   SIFDDDKMIVIENATFLSSKDTTKYDIKGFIDRSTNDESVILVFCCPSDKLDTRKKAVKE 66

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
             +      C   ++  L   I E L      + ++A +   A  G D +    EL K  
Sbjct: 67  LISKSNVYPCIALDEKSLPGYINEELKKLNLKMDRDAIKWFSARAGFDALRIEQELIKFK 126

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           ++   +  IT + V+D++    +  + ++++A  +      +     F    M   A+  
Sbjct: 127 TF---NDHITLKDVQDLMVCEPLNDVFKMVDALFERNALRLLAYYRNFRKLNMEPVAING 183

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               + + L ++ ++ +  N S E+I ++ + +
Sbjct: 184 LLSGQIRFLFQVRVLMDQGN-SKEEIARRLKAH 215


>gi|187778451|ref|ZP_02994924.1| hypothetical protein CLOSPO_02045 [Clostridium sporogenes ATCC
           15579]
 gi|187772076|gb|EDU35878.1| hypothetical protein CLOSPO_02045 [Clostridium sporogenes ATCC
           15579]
          Length = 343

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 129/315 (40%), Gaps = 18/315 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +   +         + V  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNVNNDFKDLNYVQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK++LI               KK+   ++  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKVVLIYRSDFLDDNKGDNKTKKLYKDIDNYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
               K + +    +K  +   I         +L   +E+      K I+K   +  +  +
Sbjct: 123 IMTNKRDKVSYRIKKLDNKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182

Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             + ++   NE++KL +Y +    I ++H+K++        I ++IN   + K   AI +
Sbjct: 183 ENENLSYIENEVEKLCTYAM-YEEIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  +      + +L    ++F+ L  + I  E    + E++ ++ +  I P   ++L  
Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-EGKTKEELAKELK--IHPYGCSVLMS 298

Query: 297 SLRIWNKNLVRETLH 311
             + +    + +++ 
Sbjct: 299 QSKKFTLKQIEKSIE 313


>gi|218779614|ref|YP_002430932.1| DNA polymerase III, delta subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760998|gb|ACL03464.1| DNA polymerase III, delta subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 486

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC----------YPDNKIHLMD 152
           +++ K   ++ +II ++   K   L K        + + C                 L  
Sbjct: 181 QVLEKGCADNHLIITADLADKRKKLFKYI--KEHGVVVDCSVPKGNVQADKQAQAQALTV 238

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
            + + L    KS+   A  ++   +G D     N L+KL+SY  +  +IT + V+ ++  
Sbjct: 239 QMNKVLDARGKSMEPRAFSMIQDRIGADLRTFTNTLEKLASYVGDRPVITARDVEAVVSR 298

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           T    I    NA        ++ L D  LA      A+        +    I 
Sbjct: 299 TKEDPIFAFTNALASKNAQESLALLDRLLAGDFHPLAVAAASANHLRRFLAIK 351


>gi|87301625|ref|ZP_01084465.1| hypothetical protein WH5701_03084 [Synechococcus sp. WH 5701]
 gi|87283842|gb|EAQ75796.1| hypothetical protein WH5701_03084 [Synechococcus sp. WH 5701]
          Length = 322

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 111/327 (33%), Gaps = 14/327 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +++G D+      I++             +L  L+  +  +       E  +    S
Sbjct: 2   PIHLYWGDDEAARTRAIDELISKEVDPAWHSINLTRLDGSDTAQAAQALS-EARTPPFGS 60

Query: 82  KKKIILIENLS----TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             +++L++          ++   L+  +     +  +++ S+  K +  LR         
Sbjct: 61  GARLVLLQRSPFTSPCSAELAGQLDTCLELIPESCHLVLVSSG-KPDARLRTTKALRQRA 119

Query: 138 L----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           L     +    D    +  L+  +      +++  A + L   +G D     +EL+KL+ 
Sbjct: 120 LEKSFQLPSAWDGAGQVE-LVARTARELGVTLAAGAAEALAEAIGSDSARLSSELEKLAL 178

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y  E  +        ++       +  + +A ++G    AI L D  L +  P+  L+  
Sbjct: 179 YSGEAAVQVAAV-AALVGGHSTTSL-AVGDALLEGNAGAAIALVDDLLQAGEPALRLVAS 236

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              + +    + +++         I +       P +  +++  +R      +   L ++
Sbjct: 237 LTSQVRGWLWVSLLESRGEQDVAVIAKAAGIG-NPKRIYVMRRQIRGRTPARLLTLLAQV 295

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQ 340
                  ++     +      +L  A+
Sbjct: 296 LEVEAALKRGAEAGEAFRDGLLLATAR 322


>gi|29832101|ref|NP_826735.1| DNA-binding protein [Streptomyces avermitilis MA-4680]
 gi|29609219|dbj|BAC73270.1| putative DNA polymerase III delta subunit [Streptomyces avermitilis
           MA-4680]
          Length = 336

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 98/282 (34%), Gaps = 11/282 (3%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKN 124
             T   E+ S SLF+++K++++ N        +  ++  +        ++++ +   K  
Sbjct: 63  PGTLA-ELTSPSLFAERKVVVVRNAQDLSADTIKDVKSYLGAPAEEITLVLLHAGGAKGK 121

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             L    +     +A          L   +        +S + EA Q L+ ++G D    
Sbjct: 122 GLLDAARKAGAREVACPKMTKPADRLAF-VRGEFRALGRSATSEAGQALVDSIGSDLREL 180

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            + + +L+     +  I E  V              + +  ++G+   A+    + L++ 
Sbjct: 181 ASAVSQLT--ADVEGTIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTG 238

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           +    +     Q  + + K+   +        + +  +     P K + +++ +R W  +
Sbjct: 239 VAPVMITSALAQGVRAIGKLSSARGGRPADLARELGMS-----PWKIDRVRQQMRGWTPD 293

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            V   L  +       +      +  + + ++ IA  A    
Sbjct: 294 GVAVALRAVAEADAGVKGGGDDPEYALEKAVVAIAGAARSRR 335


>gi|227488359|ref|ZP_03918675.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091573|gb|EEI26885.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 302

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 100/319 (31%), Gaps = 23/319 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G D  L+  + +   +              + +    +   +    + + +L  + +
Sbjct: 3   VIVGEDDFLVERVRDIIIQRTEGNPT-------VESHHCAELTGSMVYGLVTPTLMREAR 55

Query: 85  IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           +I+  +     K+V++    +    +    +I+  +   K   L    +K  +V  +   
Sbjct: 56  VIVFTHGELARKEVMEAFISVAADPVDEITVILMHSGGGKQKKLLTQLKKTATVNEVK-- 113

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
           P      M  + +        ++ +  Q +L  +G D       + +L      +  +T 
Sbjct: 114 PVKPRDRMRWVMDEFRSHNARVTPDVAQAVLEGVGSDLRELAAAIAQLV--SDNNGTVTV 171

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+ +      +   EI +  + G+   A+      L    P   L          +  
Sbjct: 172 DSVRTMYQGVAEVSGFEIADLIVSGQTAKAVASTRRALQLGEPPVRLTSAIASNITAIAC 231

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-- 321
           ++ ++                 + P K + L +  R W+++ +   +  +       +  
Sbjct: 232 LYSMRGAG---------AQVPGMPPWKADKLAKVARRWSEDSISRAVVILAELEEATKGW 282

Query: 322 KKKYLEKNIIFQTILYIAQ 340
                      +T+  +A+
Sbjct: 283 GNPEYSVEYAVRTLSELAR 301


>gi|170761356|ref|YP_001788281.1| DNA polymerase III subunit delta [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408345|gb|ACA56756.1| DNA polymerase III, delta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 342

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +   +         + +  +  ++++  
Sbjct: 5   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNINNDFKDLNYLQFDGSQLEEF- 61

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 62  DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 121

Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173
               K + +    K  +K   ++ I    D     +L   +E+      K I+K   +  
Sbjct: 122 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFNDRGKKIAKIPLKAF 177

Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +  +  + ++   NE++KL +Y + +  I ++H+K++        I ++IN   + K   
Sbjct: 178 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRK 236

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           AI + +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   +
Sbjct: 237 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGIE-QGKTKEGLAKELK--IHPYGCS 293

Query: 293 ILQESLRIWNKNLVRETLH 311
           +L    + +    + +++ 
Sbjct: 294 VLMSQSKKFTLKQIEKSIE 312


>gi|293189681|ref|ZP_06608398.1| DNA polymerase III, delta subunit [Actinomyces odontolyticus F0309]
 gi|292821419|gb|EFF80361.1| DNA polymerase III, delta subunit [Actinomyces odontolyticus F0309]
          Length = 305

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 106/322 (32%), Gaps = 19/322 (5%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G +  L+   ++Q +        DP +L   +            + I S SLF + +
Sbjct: 1   MIKGPEGLLVDRALDQLRALAHEA--DP-NLERTDINAATYQAGQL-DVIASPSLFGESR 56

Query: 85  IILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +++I +L T    + + L         +  + +       +   +     K T  +  + 
Sbjct: 57  MVIIRDLETMSDALANDLIAYAGAPAPDVWMFLAHPGGNARGKKVIDTITKATWPVIPAE 116

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              N    + LI   +   ++ +  EA+Q L+  LG D  A    L +L         IT
Sbjct: 117 PLKNDRDKLALIAADVRAARRQMDTEAQQALVDALGNDPRAMAGALAQLL--SDVSGRIT 174

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+            ++ +A + G    A+ LA    A+ +    L+     KF    
Sbjct: 175 LEDVRRYQAGRVEATGYDVADAAVAGNSAKALTLARHAFATGIAPQLLVTALAMKF---- 230

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           +          +    +        P + +  +  LR W+   +      I       + 
Sbjct: 231 RAMAKVSIGGSASALKMA-------PWQVDRARRELRGWSDASLAGAFGAIATADAETKG 283

Query: 323 KKYLEKNIIFQTILYIAQTACK 344
                +  I + ++ I +   +
Sbjct: 284 ASRDPQRAIEKALITICRLRGR 305


>gi|257454414|ref|ZP_05619676.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60]
 gi|257448180|gb|EEV23161.1| DNA polymerase III, delta subunit [Enhydrobacter aerosaccus SK60]
          Length = 339

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 19/259 (7%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHD-PFSLVVLNALEIQKNISTFWNEINST 77
            +  V++ +G +  L         + +S  +     ++  ++    +   +    E+NS 
Sbjct: 18  PATGVWLMHGDEDLL----SQWLIEKMSPNWRQHNMAISRMDITSAKSWQAVLA-ELNSL 72

Query: 78  SLFSKKKIILI-ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--NNTLRKIAEKF 134
           SLF   K I++  N   +K+ L  L +    N  N ++II     KK  ++    + +KF
Sbjct: 73  SLFDDNKAIIVHGNHKPDKEALAELAQFATSNPSNCLVIISDKYDKKSQSSAFFSLCDKF 132

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-S 193
             V  I C+   +     L+++        ++K A Q+L+A    + +A+   L +LS  
Sbjct: 133 GQV--IECHLYQEQQREQLLQQHAQDFGLELTKPAWQMLIAQTQHNLLAAYQSLWRLSYL 190

Query: 194 YCLEDI-------LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           Y   D         I E  + D +    +    ++ +A + G       +     AS+ P
Sbjct: 191 YATTDANPPTRFVTIDESQLFDGLVSQSMFTTFDLSDAMLAGDTAQVAKILQQLKASEEP 250

Query: 247 SHALLHGFLQKFQLLEKIH 265
              +L    +  + +  + 
Sbjct: 251 ESLVLWMIAKDMRNILSLQ 269


>gi|168181654|ref|ZP_02616318.1| DNA polymerase III, delta subunit [Clostridium botulinum Bf]
 gi|237796421|ref|YP_002863973.1| DNA polymerase III subunit delta [Clostridium botulinum Ba4 str.
           657]
 gi|182675186|gb|EDT87147.1| DNA polymerase III, delta subunit [Clostridium botulinum Bf]
 gi|229262924|gb|ACQ53957.1| DNA polymerase III, delta subunit [Clostridium botulinum Ba4 str.
           657]
          Length = 343

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 131/319 (41%), Gaps = 26/319 (8%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +   +         + V  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDSNINNDFKDLNYVQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTAFNACETLPFMSEKKAVLIYRADFLDDNKGDNKTKKLYKDIENYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQIL 173
               K + +    K  +K   ++ I    D     +L   +E+      K ISK   +  
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIRGENLEKRVEKFFNDRGKKISKIPLKAF 178

Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +  +  + ++   NE++KL +Y + +  I ++H+K++        I ++IN   + K   
Sbjct: 179 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRK 237

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           AI + +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   +
Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGIE-QGKTKEDLAKELK--IHPYGCS 294

Query: 293 ILQESLRIWNKNLVRETLH 311
           +L    + +    + +++ 
Sbjct: 295 VLINQSKKFTLKQIEKSIE 313


>gi|167755870|ref|ZP_02427997.1| hypothetical protein CLORAM_01387 [Clostridium ramosum DSM 1402]
 gi|237734838|ref|ZP_04565319.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704809|gb|EDS19388.1| hypothetical protein CLORAM_01387 [Clostridium ramosum DSM 1402]
 gi|229382166|gb|EEO32257.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 315

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 112/305 (36%), Gaps = 26/305 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN---EINSTSL 79
           +F+ YG +  L+ + +   KK              +N    + N  +      ++ +   
Sbjct: 2   IFVIYGEESFLMEQKLQSLKKEYDCNED------NMNISTYRANEDSLEEVYEDLITPPF 55

Query: 80  FSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-EIKKNNTLRKI 130
            + KK+++++N           +   L+  E+ +I +     +I     +  +   + K 
Sbjct: 56  LTDKKMVVLKNPYFLTTKKVKKDNNELEYFEKCLINSEEVIFVIYHVGKDFDERKKIVKN 115

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
             K      I     N   L D   +++     +I  +A ++LL+ LG        E++K
Sbjct: 116 LRKQAQFFEID--KVNHYKLSDSTRQAIRRRDATIDDDALELLLSRLGDSLNNVALEVEK 173

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y      IT   V +++       +  + +A +Q        +    +        L
Sbjct: 174 LCLYS---KHITYDIVDELVSKPLDENVFALTSAILQKDRRKMFSIYHDLMILNEEPIKL 230

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +     + +L+ ++ ++ +    + ++I +     + P +   +++  + ++ N + + L
Sbjct: 231 IVLIAGQMRLIYQVKLL-DRKGYNDKEIGKILG--VNPYRLKYVRQEGKDFDLNELLQCL 287

Query: 311 HKIDH 315
             +  
Sbjct: 288 DDLSR 292


>gi|325268923|ref|ZP_08135546.1| hypothetical protein HMPREF9141_0755 [Prevotella multiformis DSM
           16608]
 gi|324988735|gb|EGC20695.1| hypothetical protein HMPREF9141_0755 [Prevotella multiformis DSM
           16608]
          Length = 341

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 105/287 (36%), Gaps = 24/287 (8%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M  ++S KF             V++  G +   I ++ +   ++        F+  +   
Sbjct: 13  MRDLKSRKFA-----------PVYMLMGDESYYIDQISDYIAEHALRPEERDFNQTICFG 61

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            +         +      + ++ ++I+++     + + + LE+ +   + + I++     
Sbjct: 62  SDSTA--VQIADMARRYPMMAEYQVIIVKEAQNIRSL-ESLEKYLKNPVKSTILVWCHKN 118

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH--LMDLIEESLLIGQKSISKEAKQILLANLG 178
            K +   RK A     V+ +           L D I+  L     SI  +A Q++  ++G
Sbjct: 119 GKIDA--RKKAVGLAQVVGVVFESKKLRDYQLPDFIQTYLKQKNVSIDPKACQMIADHIG 176

Query: 179 GDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            D     +EL K L S   + + +T + V+  +  +      E+ NA +Q   + A  + 
Sbjct: 177 SDLGRLTSELDKVLISLPADRLRVTPEVVEREVGVSKDFNAFELRNAIVQKDCFKANQIV 236

Query: 238 DFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            +F ++         L      FQ L  +H        + ++ I   
Sbjct: 237 KYFDSNPKAGSLYSFLPLLFSYFQNLMIVHY---APRRNTDQDIASA 280


>gi|307591375|ref|YP_003900174.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7822]
 gi|306986229|gb|ADN18108.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7822]
          Length = 314

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 93/243 (38%), Gaps = 20/243 (8%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87
           G +  LI + I              F+        + + I T     N   + +  +++ 
Sbjct: 3   GDNDFLISQEIQALLAQYLAPEWSLFNYNEYPPDSLNEAIITM----NQPPIGNGFRVVH 58

Query: 88  IEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK-IAEKFT-----SV 137
           +       +     +  +E+ I       ++I+ +++I +   + K + +K       ++
Sbjct: 59  LIQCPWFGTINDDSIAQVEKEIDLLPSTTVLILTASKIDRRLKVVKMLIDKAALFKEFNL 118

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           ++    P ++  L+  + +        +++ A + L+  +G D      EL+KL ++  +
Sbjct: 119 IS----PWDEGTLITQLYQMATSIGVDLTQAAAKQLIIAVGNDTRLLSGELEKLKTFVGD 174

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +  +T + V  ++ +     I+ +  A ++  +  AI   +    S   +  +L   +  
Sbjct: 175 E-AVTVESVNQLVDNRAATSID-LAKACLKQDVKTAIATLENLNNSGEAAPKILASLITL 232

Query: 258 FQL 260
           F+ 
Sbjct: 233 FRQ 235


>gi|120613179|ref|YP_972857.1| DNA polymerase III subunit delta [Acidovorax citrulli AAC00-1]
 gi|120591643|gb|ABM35083.1| DNA polymerase III, delta subunit [Acidovorax citrulli AAC00-1]
          Length = 348

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 97/301 (32%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             ++  +G +  L  E  +  +       +   S   +       + S       S SLF
Sbjct: 17  RPLYTLHGDEPLLQQEAADAIRAAARGQGYTERSSHTVAGAHF--DWSAVLAAGGSLSLF 74

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I+ I   +    K     L++I      N   + ++    + K             
Sbjct: 75  ADKQIVEIRIPSGKPGKDGGAALQQIATAAAGNEGTLTLVVLPRLDKATRTGAWFSALDR 134

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQK 190
             +++   P  ++ L   I + L    + ++     +   Q     + G+ +A+  E+QK
Sbjct: 135 EGVSVQIDPVERVALPQWIAQRLAAQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEVQK 194

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        ++   V+  + +     + ++  A + G++     + D   A       +
Sbjct: 195 LAL-LHPPGELSWAQVEAAVLNVARYDVFKLSEAVLSGQVARMQRMLDGLQAEGEAEVLV 253

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + L+++             + +     +   K  + +  +  ++       L
Sbjct: 254 HWALAEDIRSLKRVKDAVNAGKPLPMALRENR---VWGTKERLFERIVPRFSDAAASRLL 310

Query: 311 H 311
            
Sbjct: 311 Q 311


>gi|318061211|ref|ZP_07979932.1| DNA polymerase III, delta subunit [Streptomyces sp. SA3_actG]
 gi|318081177|ref|ZP_07988509.1| DNA polymerase III, delta subunit [Streptomyces sp. SA3_actF]
 gi|333027157|ref|ZP_08455221.1| putative DNA polymerase III, delta subunit [Streptomyces sp.
           Tu6071]
 gi|332747009|gb|EGJ77450.1| putative DNA polymerase III, delta subunit [Streptomyces sp.
           Tu6071]
          Length = 326

 Score = 66.5 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 112/339 (33%), Gaps = 16/339 (4%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + +   +      + +  G ++ LI +   +     +        +  L   ++Q     
Sbjct: 1   MARKNADDDPLAPLTLAVGQEELLI-DRAVRQVVLAARAADADTDVRELTPEQLQ--PGG 57

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTL 127
              E+ S SLF+++K++++ N        +  ++  +   +    +++  +   K    L
Sbjct: 58  LA-ELTSPSLFAERKVLVVRNAQDLSADAVKEVKGYLPAPVDEVALVLCHAGGAKGKGLL 116

Query: 128 RKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                +      + C         +  +        +S + EA Q L+  +G D      
Sbjct: 117 DAA--RKAGAREVPCPKMTKPADRLAFVRNEFRTTGRSATPEACQTLVDAIGSDLRELAA 174

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            + +L+     +  I E  V              + +  ++G+   A+    + L++ + 
Sbjct: 175 AVSQLT--ADVEGTIDEAIVGRYYTGRAETSSFTVADRAVEGRAAEALEALRWSLSTGVA 232

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +        Q +  I  +          + ++      P K + +++ +R W  + V
Sbjct: 233 PVMITSALA---QGVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPDGV 287

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
              L  +       +      +  + + I+ +A+ A   
Sbjct: 288 SIALRAVAEADAGVKGGGDDPEYALEKAIVTVARAARSR 326


>gi|260912718|ref|ZP_05919204.1| DNA-directed DNA polymerase III delta subunit [Pasteurella dagmatis
           ATCC 43325]
 gi|260633096|gb|EEX51261.1| DNA-directed DNA polymerase III delta subunit [Pasteurella dagmatis
           ATCC 43325]
          Length = 344

 Score = 66.5 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 118/311 (37%), Gaps = 14/311 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G D  L+ E  +   +       D  +++ ++A     + +  +    S  LF 
Sbjct: 19  KVYYLVGQDPLLLSESQDLISQFALNQGFDEKNVIQIDA---NTDWNDIFERCQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136
            K+I+ +        +L   L+E+I     + +++++  ++ K    ++   +       
Sbjct: 76  NKQILFLNLPENLTALLQQHLQELISLLNEDVLLVLQLPKLAKATEKQQWFTEANAYEPQ 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + ++C       L   + +       +I ++A Q+L  +   + +A +  LQ LS    
Sbjct: 136 AILVNCQTPTIEQLPRWVLQRAKSMGLNIDEQAVQLLCYSYENNLLALKQSLQLLSL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T Q V++ +  + V    + ++A ++GKI  A  +     A  M    LL    +
Sbjct: 195 PDNKLTYQRVQNSVEQSSVFTPFQWVDALLEGKINRANRILMGLKAEDMQPIILLRTLQR 254

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311
               L ++    +   ++      +  +N     +   +R +  +  + +    +     
Sbjct: 255 DLITLLELAKPTQKYVLTDPLPTHQLRENFDRLKVWQNRRPLFTQIFQRFTYQKLYLIFQ 314

Query: 312 KIDHRIHLARK 322
           ++      A++
Sbjct: 315 QLADIERAAKQ 325


>gi|225010861|ref|ZP_03701329.1| DNA polymerase III, delta subunit [Flavobacteria bacterium
           MS024-3C]
 gi|225005069|gb|EEG43023.1| DNA polymerase III, delta subunit [Flavobacteria bacterium
           MS024-3C]
          Length = 332

 Score = 66.5 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 112/317 (35%), Gaps = 18/317 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFS-LVVLNALEIQKNISTFWNEINSTSLF 80
            +++ YG +   I  + +  ++         F+ L+V     + ++I    ++     + 
Sbjct: 18  PLYLLYGEEPYYIDAIADLIEQKALAEEEKAFNQLIVYGKDALIEDI---VSQAKRYPMM 74

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF--TSVL 138
           +++++I+++      + +D L+E     + + I+++     K +   RK   K    +  
Sbjct: 75  AERQLIVVKEAQHLSRQIDGLQEYAKHPLQSTILVLCYKYQKPDK--RKGVFKAFQKNGT 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +         +   I + +     +       +L   LG D      E+ KLS +  + 
Sbjct: 133 TLESKKIYDNKIPSWINDLIHRKGFTAQPAVPHLLFEFLGTDLSRIEKEIDKLSIHIEKG 192

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFL-Q 256
            LIT   V+  I  +      E+  A  +  I  A  +  +F  + K     +    L  
Sbjct: 193 ALITPDIVEQHIGISKDYNNFELKKAIGERDILKAFKIVHYFAHNPKDNPFLMTVSILHS 252

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  + + H + +    +   +      +   +  N ++ + + +    V + L  +   
Sbjct: 253 FFTQIMQYHGLTDH---NPNHVAASLGISPYFI--NEIKNAAKQYPMKRVSQILKVLKDL 307

Query: 317 IHLARKKKYLEKNIIFQ 333
                K K +      Q
Sbjct: 308 DL---KNKGMGAPTDHQ 321


>gi|311113642|ref|YP_003984864.1| DNA-directed DNA polymerase III subunit delta [Rothia dentocariosa
           ATCC 17931]
 gi|310945136|gb|ADP41430.1| DNA-directed DNA polymerase III delta subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 342

 Score = 66.5 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 115/322 (35%), Gaps = 21/322 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +GS++        +  +    + +    LV +NA        T    + S SLF 
Sbjct: 32  PVIMLHGSEE-YFASRARERLRTAFYSTYPNADLVTINASTYTAGELTL---LASPSLFG 87

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             KII  +N++T  +  L+ +   I     + ++I++ +   +   L     K  + + I
Sbjct: 88  TAKIIDADNVATMSEDFLNDVLSYIAAPESDIMLIMQHSGGNRGKKLIDAIRK--NHVLI 145

Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197
            C P   +    + +       +++I   A ++L+A      +  ++  +LQ        
Sbjct: 146 PCKPLKAEREKTEFVTSEFRAAKRTIDPGALRLLVAATNDTAELASACAQLQ-----ADV 200

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE+ V         +    + +A + G    A+ L    LA+      LL     +
Sbjct: 201 AGNITEEIVNRYYGGRTEVTAFRVGDAAVTGNAAEALRLLRHALATGTEPIPLLGALAMR 260

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + + ++H ++  +     ++         P +    Q   R +    +   +  +    
Sbjct: 261 IRNIARLHHVRASAQELAREVGMA------PWQVEQAQRDGRRFTGEQIARIVQLLADAD 314

Query: 318 HLARKKKYLEKNIIFQTILYIA 339
              + +       + + +L IA
Sbjct: 315 AQLKGEGLDPVYAVERAVLAIA 336


>gi|256825556|ref|YP_003149516.1| DNA polymerase III subunit delta [Kytococcus sedentarius DSM 20547]
 gi|256688949|gb|ACV06751.1| DNA polymerase III, delta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 317

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 104/305 (34%), Gaps = 20/305 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS--L 79
            + +  G +  LI   + Q  ++      DP     ++ + +Q    T  +   + S  L
Sbjct: 6   PLVLIKGPEDLLIDRAVEQVVESARAV--DP----EVDVVRVQAEAHTPGDVAMALSPSL 59

Query: 80  FSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAEKFTS 136
           F    ++++ N     +++ D +   +      +++++   S    K   L  +A     
Sbjct: 60  FGGGTVVVVRNFEVAGEQLGDEVAAAVADPGEGNVLVVSHRSGTKHKRV-LDAMARAHAH 118

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +       +     + +++   + ++ I  +A ++L+A  GGD         +L     
Sbjct: 119 TIEAPALKRDGDK-ANFVQKEFRVARRRIDSDAVEVLVAAAGGDARTLAAACAQLI--AD 175

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +T + V             ++  A   G+   A+ L    +   +    ++     
Sbjct: 176 TEGTVTTEEVNLYHGGKVETTGFKVAEAAFTGQRAEALRLVRHAMIGGLDPVPIVAVMAG 235

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + +    I ++    N    ++ ++       + +      +R W+   +   +  +   
Sbjct: 236 QARQ---IGLVASAGNRGSAQVAKELGMAPFMVDKAR--RMMRGWDGERLGAAVTALARC 290

Query: 317 IHLAR 321
            H  +
Sbjct: 291 DHEVK 295


>gi|126697175|ref|YP_001092061.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9301]
 gi|126544218|gb|ABO18460.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 333

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 32/298 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D       I +             ++  LN  +  + ++   +E+ +     
Sbjct: 2   PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVNKALDEVLTPPFGE 60

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             +I+ ++N     S  + +    E+I      N   I+++ +     +K    L+K+  
Sbjct: 61  GYRIVTLKNNPIFTSKNEDLRTKFEKIHDNIPQNTYFILQNTKKPDSRLKSTKFLQKLIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK  S+  I  Y   K  L D   E        I K A ++++ ++G D     N
Sbjct: 121 NNLAKEKSFSLPEIWDYEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSYKLIN 176

Query: 187 ELQKLSSY-----CLEDILITEQ--HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           EL K  +Y        +  +  +   VK I  D     I +II+  +Q  I  +++  ++
Sbjct: 177 ELAKAKTYLSAVSSDSNSQLFLKSIDVKKIFSDHQS-NIFKIIDLLLQKNINESLIEINY 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293
            L    P+  L  G + + ++   I +     N + EKI         K I  ++R +
Sbjct: 236 SLQKGEPALRLNAGLISQIRIHTIIKLAINSGNDNEEKICNLAGISNPKRIFFIRRKV 293


>gi|323341652|ref|ZP_08081885.1| DNA-directed DNA polymerase III delta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464077|gb|EFY09270.1| DNA-directed DNA polymerase III delta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 311

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 10/250 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G +  L+   +    K      +  F +   +  +             + SLF  KK
Sbjct: 4   VIVGKEPSLVKSKVESIIKEY-ENQYGVFDVSHFDTRDKGFVFDHVLESAMTVSLFGDKK 62

Query: 85  IILIE-NLSTEKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            +++  +    K+V   L E++ +++ +  +I+I   +    + + K   K   V  I  
Sbjct: 63  AVVLNTHDELIKEVEAALGELMSQSMFDVSLIVIFEKKPLVKSVIGKAIAKHARVHQI-- 120

Query: 143 YPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
             D +   L  L+++ +      +S  A   LL  +G D      EL KLS        I
Sbjct: 121 -KDMDVGQLSLLMKQEIDRLDFKMSNPAMVELLDRVGNDVARLYQELNKLSLV---GEAI 176

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
            ++HV+ ++       I  I NA ++  I  A  +    LA K+   ALL       + +
Sbjct: 177 EQEHVRKLVSKNIDEDIFAISNALLEKNISKAFSVYQNLLAQKVDPLALLGLIGSSIRKI 236

Query: 262 EKIHIIKECS 271
            +I  + E  
Sbjct: 237 YQISALYEQG 246


>gi|282861826|ref|ZP_06270890.1| DNA polymerase III, delta subunit [Streptomyces sp. ACTE]
 gi|282563642|gb|EFB69180.1| DNA polymerase III, delta subunit [Streptomyces sp. ACTE]
          Length = 329

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 101/285 (35%), Gaps = 14/285 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G +  L+   + Q       +  D   +  L + ++Q    T   E+ S SLF+
Sbjct: 14  PVTLAVGQEDLLLDRAVQQVVAAARASDADT-DVRDLTSDQLQ--PGTLA-ELTSPSLFA 69

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++K++++ N        +  ++  +        ++++ +   K    L  + +     +A
Sbjct: 70  ERKVVIVRNAQDISADTIKDVKAYLSAPAEEITLVLLHAGGAKGKGLLDAVRKSGAREVA 129

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                     L   +        +S + EA Q L+ ++G D     + + +L+     + 
Sbjct: 130 CPRTTKPAERL-TFVRSEFRALGRSATPEACQALVDSIGSDLRELASAVSQLT--ADVEG 186

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I E  V              + +  ++G+   A+    + L++ +    +        Q
Sbjct: 187 TIDEAVVGRYYTGRAEASSFTVADRAVEGRAAEALEALRWSLSTGVAPVLITSALA---Q 243

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            +  I  +          + ++      P K + +++ +R W  +
Sbjct: 244 GVRAIGKLSSARGGRPADLARELGMP--PWKIDRVRQQMRGWTPD 286


>gi|297626067|ref|YP_003687830.1| DNA polymerase III, delta subunit [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921832|emb|CBL56392.1| DNA polymerase III, delta subunit [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 341

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 114/331 (34%), Gaps = 10/331 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V + +GS++ L+ E      +  ++       LV L   ++    + F  E +  SLF+ 
Sbjct: 14  VTLVHGSEQ-LLSERAVAALRKRAMAEEPGLQLVELVGGDMS--PADFV-EASGGSLFAD 69

Query: 83  KKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             +++I    S   + +D L            +I+      K   L     K  + + + 
Sbjct: 70  HSLVIITGAESMVPESVDALVAFAGAPSPEVGVIVVHPGGNKGRGLVDKLRKAKAGV-VE 128

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L   ++      +  +  +A Q L+  +G D  A    + +L+S    +  +
Sbjct: 129 VVAPKAWELPKFVQAEARAARVGMESDAAQTLVDAVGNDLRALAGAVSQLASDWAGE-RL 187

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           + + +         +    + +A + G+   A+    + L   +    +        + L
Sbjct: 188 SSEMISRYFQGRAEVTSFAVSDAVLAGQTGQALERLRWALDLGVAPVLVTSALANGLRSL 247

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            + ++      +S  ++ +       P K   L    R+W++  V   L  +       +
Sbjct: 248 GR-YLDVRAERMSDIEMSRIVGVP--PWKVKTLARQSRLWSETAVARGLIALSRADAAVK 304

Query: 322 KKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
                    + Q IL +      + + ++R+
Sbjct: 305 GAATDAGFALEQLILALDHARRDDASGHRRS 335


>gi|50365185|ref|YP_053610.1| hypothetical protein Mfl368 [Mesoplasma florum L1]
 gi|50363741|gb|AAT75726.1| unknown protein [Mesoplasma florum L1]
          Length = 319

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 126/310 (40%), Gaps = 28/310 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  Y  D  L+ + +N+  KN+       + +   +   I  +IS  +  +N+ SLF +
Sbjct: 1   MYFIYSEDHFLLTKTVNKLVKNLL--TEKEYEVENYSL--IYNDISEIYTSLNTFSLFGE 56

Query: 83  KKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAE 132
            KI++I +         S  +   +     I+++  ++++I   N   I K   + K  E
Sbjct: 57  PKILIISDAWFATEEKISLHRNYSEEALYRILESKTDNVVIFTLNNERISKRLKIAKYIE 116

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +   V  +    +N+  +++ I+      +KSI+      +  ++  D     NEL KLS
Sbjct: 117 ENLEVTNVKTMQENE--VLNYIKAFFTRNEKSITDHDAAFIFQSIPKDMQTLTNELTKLS 174

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---HA 249
              +E  +IT   +K+ +       I E+ NA +  +    + L   +L          A
Sbjct: 175 --HIESDVITLDDIKNNLSKYIDNDIFELSNAFVNNETKTFLKLYKDYLLMNDDISKLIA 232

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLRIWNKNLVRE 308
           LL   +  F+ +  +        I  E+I+Q T+    P + +  +   L I   N   +
Sbjct: 233 LLSSTVVFFRDVNVMKQQ----GIRNEEIVQITKA--HPYRVKIAISNKLNIRELNDKIK 286

Query: 309 TLHKIDHRIH 318
            L+ I   + 
Sbjct: 287 LLYYIQQGVL 296


>gi|257438235|ref|ZP_05613990.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257199312|gb|EEU97596.1| DNA polymerase III, delta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 342

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 111/331 (33%), Gaps = 23/331 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+ FY S++ L+ + ++   + +S    +     VL+       I        + S F 
Sbjct: 16  PVYYFYSSERYLVRQAVSAAVRILSADTDE--ETTVLDGA--APEIEQLIMAAGTISFFG 71

Query: 82  KKKIILIENLSTEKKVLDCLEEI--IIKNICNHIIII------KSNEIKKNNTLRKIAEK 133
            ++++++  L         LEE+   + ++ N ++++      + +++K     +K+   
Sbjct: 72  TRRVVVLPELDPAAYGDKDLEELCSTLSSLENAVVVLGSVFELERSKLKTGKRAQKLI-- 129

Query: 134 FTSVLAISCYPDNKI----HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                 +    +        L  ++ E       ++ + A   LL   G D     NE+ 
Sbjct: 130 -AECKKLGFVEELSKPKPYELKMMLIERAKAQDTTLPEGAAAALLERCGEDPFLLENEVD 188

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL +       +T   V ++   +    + E+I          A       L  +    A
Sbjct: 189 KLCALS-GYQTVTAAMVAEMGTVSLEADVFEMIRMITAKNATGACKKLQTLLRLQQEPIA 247

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRE 308
           +    +  +  L ++ +       S+  + +    K      +   + +   +    +  
Sbjct: 248 ITGAMIGSYVDLYRVKLGA-SKRKSYAAVFKDFGYKGSDYRLKRSAETA-SHYTLGQLET 305

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            L  +       + +    + ++   +  +A
Sbjct: 306 CLQVLLDLDKSLKSQPVDVQTLLEAALCRLA 336


>gi|296269127|ref|YP_003651759.1| DNA polymerase III subunit delta [Thermobispora bispora DSM 43833]
 gi|296091914|gb|ADG87866.1| DNA polymerase III, delta subunit [Thermobispora bispora DSM 43833]
          Length = 325

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 97/310 (31%), Gaps = 14/310 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
            ++     V +  G ++ L  +   +     +        +  L   E           +
Sbjct: 3   PDMANPAPVTLIIGDEEFL-ADRAIRATVAQARGTDPGIEVHELAGGE--AEPGDLA-RV 58

Query: 75  NSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
            S SLF  + ++LI +    +K+V++ +         +  +I+  +   K   L    +K
Sbjct: 59  ASPSLFGDRSVVLIRSAQELKKEVINEVLAYAADPAEDVHLIVAHDGGAKGKALVDGLKK 118

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             + +     P      +D I        ++I+  A Q LL  +G D         +L  
Sbjct: 119 AGAHVITVAKPTKPGERLDFIRGEFERAGRTITPAAAQALLDAVGSDLRELAAACSQLVF 178

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               +  I E  V         +    I +  I+GK+  A+    + LA+ +    ++  
Sbjct: 179 DTPGEK-IDEAAVARYYRGRAEVTGFSIADLAIEGKLGEALEQLRWALATGVAPVLIVSA 237

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII--PMKRNILQESLRIWNKNLVRETLH 311
                     +  + +           +   ++   P K   ++  L  W    +   + 
Sbjct: 238 LA------NGLRALAKVGGAPRNLRGGQLASHVGLPPWKIERVRRQLAGWGPEGLSTAMQ 291

Query: 312 KIDHRIHLAR 321
            +       +
Sbjct: 292 AVAVADEQVK 301


>gi|25028803|ref|NP_738857.1| hypothetical protein CE2247 [Corynebacterium efficiens YS-314]
 gi|259507868|ref|ZP_05750768.1| DNA polymerase III, delta subunit [Corynebacterium efficiens
           YS-314]
 gi|23494089|dbj|BAC19057.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164661|gb|EEW49215.1| DNA polymerase III, delta subunit [Corynebacterium efficiens
           YS-314]
          Length = 328

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 108/308 (35%), Gaps = 29/308 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTS 78
           V +  G D+ L  E   +      I    P      + V+ A E+ +      + + S S
Sbjct: 15  VHLIIGDDEYL-AERA-RLNITAQIREASPEGEALPVTVMRAGEVSE--GELLD-LLSPS 69

Query: 79  LFSKKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           LF + +++++   + + ++     L+  I      H+III S         +++  K   
Sbjct: 70  LFGEDRVVVLTHMDQAGQEPANLVLKAAIDPAPGIHMIIIHSG----GGRTKQMVPKLKK 125

Query: 137 VLAI---SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           +  +   +   D    L   + +        ++ +    LL  +G D     + + +L  
Sbjct: 126 IAVVHEAAKLKD--RELPAWVMQEFRNHGAKVTPDVVHSLLEGVGSDLRELASAVAQLV- 182

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               D  +T + ++        +   ++ +    G++  A+      L   +   AL   
Sbjct: 183 -SDTDGNVTVEKIRTYYRGVAEVSGFDVADLACAGQVSKAVASTRRALQLGVKPAALSAA 241

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET---L 310
              K   + +++  +    I   ++          +++  + +  R W+   V E    +
Sbjct: 242 LSMKVGQIARLYSTR--GRIDSGRLAGVLGVPPFVVEK--VAKQARTWSGESVSEAVILM 297

Query: 311 HKIDHRIH 318
            ++D  + 
Sbjct: 298 AELDAAVK 305


>gi|226950394|ref|YP_002805485.1| DNA polymerase III, delta subunit [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844570|gb|ACO87236.1| DNA polymerase III, delta subunit [Clostridium botulinum A2 str.
           Kyoto]
          Length = 343

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +             + +  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173
               K + +    K  +K   ++ I    D     +L   +E+      K ISK   +  
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFSDRGKKISKIPLKAF 178

Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +  +  + ++   NE++KL +Y + +  I ++H+K++  +     I ++IN   + K   
Sbjct: 179 IQTIENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYENIKDEDIFDLINFISEKKPRK 237

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           AI + +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   +
Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEDLAKELK--IHPYGCS 294

Query: 293 ILQESLRIWNKNLVRETLH 311
           +L    + +    + +++ 
Sbjct: 295 VLMSQSKKFTLKQIEKSIE 313


>gi|261343551|ref|ZP_05971196.1| DNA polymerase III, delta subunit [Providencia rustigianii DSM
           4541]
 gi|282568700|gb|EFB74235.1| DNA polymerase III, delta subunit [Providencia rustigianii DSM
           4541]
          Length = 344

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 113/308 (36%), Gaps = 23/308 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ +GS+  LI E  +  ++         F      +LE   +    ++   + SLF+ +
Sbjct: 21  YLIWGSEPLLIQESQDAIRQAA---LQQGFEEHFTFSLEQNTDWDEIFSLCQALSLFASR 77

Query: 84  KII--LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT------ 135
           +++   +        + + L ++      + +       + + + L K  E         
Sbjct: 78  QMLTLFLPENGPNAAMAEKLLQLAGLLHPDLL------LVLRGHKLTKAQENSAWFKAIS 131

Query: 136 -SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + ISC       L   + +     + ++  EA Q+L     G+ +     L++LS  
Sbjct: 132 QDGVYISCLTPEYQRLPQWVSKRASQMRLTLETEANQLLCYCYEGNLLGLAQALERLSL- 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +T   V+  + D+        ++A + GK   +  + +      +    LL   
Sbjct: 191 LYPDGKLTYPRVESAVNDSAHFTPYHWVDAVLAGKSRRSWHILEQLEREDIEPVILLRAI 250

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            ++  L+  +   ++ S    + +  + +  +   +R +L E+++  +   ++  L  + 
Sbjct: 251 QRELMLMITLK--RQSSTTPLKTLFDQHK--VWQNRRGLLGEAIQRLSLYQLQSALMLLT 306

Query: 315 HRIHLARK 322
                 ++
Sbjct: 307 QAEIHTKQ 314


>gi|291533541|emb|CBL06654.1| DNA polymerase III, delta subunit [Megamonas hypermegale ART12/1]
          Length = 338

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 118/331 (35%), Gaps = 27/331 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G +  L       + K +    +       +   +   +       ++S+  FS+
Sbjct: 18  VYLITGEELYL----AENYLKKLLTLLNPQNDEEAVQYFDSTADTKAILQALDSSPFFSE 73

Query: 83  KKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKIAE 132
             II+ ++L        + +K+      + I       I+I++    +I K   L K  E
Sbjct: 74  HNIIIAKDLKIFQDKLSAKDKEDEQLFLDYIANMPDYSILILQYNLGKIDKRRKLIKTIE 133

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG----DRIASRNEL 188
           KF +++   C      ++ D +   L        +EA    L  +             EL
Sbjct: 134 KFGTIV--ECEAIAYWNINDWLNSRLRELNLRFDREAYAYFLEAIKSMEKISLGFLDQEL 191

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           QKL+ Y  +  LI  Q ++D       +    +  A     I  A+ L      + +   
Sbjct: 192 QKLTLY-PQKTLINRQFLEDNFSSIPEISTFRLWEALGNKDIATALELFTIQQQAGIHPL 250

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            LL    ++   L  + I       S ++I    + +    ++  + +  + ++ + +++
Sbjct: 251 RLLKFLARQIDQLWHVKIYL-SEGQSTKQIASILKLHPFITEK--IIKQTQNFSLDKIQQ 307

Query: 309 TLHKIDHRIHLAR---KKKYLEKNIIFQTIL 336
            +  I    +  +    +  L +N++ +  L
Sbjct: 308 MIIDIADADYKLKTGSNEPALIENLLIKFCL 338


>gi|118586843|ref|ZP_01544277.1| DNA-dependent DNA polymerase III, delta subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118432675|gb|EAV39407.1| DNA-dependent DNA polymerase III, delta subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 331

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 117/311 (37%), Gaps = 22/311 (7%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKKKIILIENL----- 91
             QF   +  +  + F        ++    I     ++++ S  + ++I+++EN      
Sbjct: 29  TEQFSNLLENSIDENFRAWDFVRTDVNDTGIKEVLADVSTLSFNASRRIVIVENPLFLTA 88

Query: 92  --STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSVLAISCYPDN 146
             S EK   + L + +      + +II +      K+  T++ + +   +   +   P +
Sbjct: 89  KNSLEKSEENLLLKYLNNPEGGNSLIINAVNFSLDKRKKTVKSLIKTAEN---VDFKPLD 145

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  ++ ++++  L+   SI           L  +     N L KL  Y  ++ +I +  +
Sbjct: 146 ERQILQIVKKRFLVADISIEDAVLNYYFRRLAFNLRLIINNLDKLLLY-GQNHIIDKHVI 204

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             +I         ++I A  Q K    + + +  +        +    L +++LL +   
Sbjct: 205 DFLIAPESTESAFDLIEAINQKKPGKVLKIYEELIDRGEAPIRINALLLSQYRLLIQAKS 264

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           +K  ++ +  +++     +I P +  +  +   +     +  +   +       +  + L
Sbjct: 265 LK-LNDQNLSRLL-----HIHPYRAKLANQLASLKTFGELSNSFLNLSDIELKLKSTR-L 317

Query: 327 EKNIIFQTILY 337
           +  ++F+  L 
Sbjct: 318 DPKMLFEIFLS 328


>gi|32472195|ref|NP_865189.1| hypothetical protein RB2871 [Rhodopirellula baltica SH 1]
 gi|32397567|emb|CAD72873.1| hypothetical protein RB2871 [Rhodopirellula baltica SH 1]
 gi|327541401|gb|EGF27940.1| DNA polymerase III, delta subunit [Rhodopirellula baltica WH47]
          Length = 349

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 96/296 (32%), Gaps = 24/296 (8%)

Query: 68  STFWNEINSTSLF----SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           S   +++ + SLF      K+ +++ +           +E+ +         +++   + 
Sbjct: 57  SDLRDDLATASLFDFDGGDKRTLVVRSADKFLSNHRPEIEKYVSAPGDATRFVLELESLA 116

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL------LIGQKSISKEAKQILLAN 176
            N  + K  +K   ++A +   D K+ +                 +  ++  A   L+  
Sbjct: 117 SNTRVYKAVDKSHLLVACTSATDAKLGITAASRRKFLTSFVADRHKTQLAPAAADALVEM 176

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           LG +      E+ KL+ Y      I E  V+D++       + +I +A   G    A+  
Sbjct: 177 LGEEIGMLDTEIAKLALYVDVGGKIEEPLVRDVVAGWQGKTVWQITDAIAAGDAAEALRQ 236

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF-------EKIIQKTEKNIIPM 289
            D   +    + ALL       + L       E    S                +     
Sbjct: 237 LDKLFSGGQRAIALLPQIAWSLRRLGMTTAAIEFRERSGRPWQFEDALAAGGIRRGFEVQ 296

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE---KNIIFQTILYIAQTA 342
                 + L+   +   ++ L  +       +     E   + ++ Q IL +A+ A
Sbjct: 297 SAK---KQLQSIGRERAKQLLPWLLDADLRLKGTHSAEGRDRFLLEQLILKLARQA 349


>gi|225621198|ref|YP_002722456.1| D polymerase III subunit delta [Brachyspira hyodysenteriae WA1]
 gi|225216018|gb|ACN84752.1| D polymerase III, delta subunit [Brachyspira hyodysenteriae WA1]
          Length = 338

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 21/272 (7%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL- 61
            IE  K      K  F  H ++I  G ++      I     ++     D      +N   
Sbjct: 9   EIEFQKVKDNYIKEPF-KHCIYILTGKERLFKKAFIAAMHSSMFPDEGD----SEMNYSV 63

Query: 62  --EIQKNISTFWNEINSTSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS 118
             +    I     E+  T  F  K ++I+I   +      +   +         I+I+++
Sbjct: 64  FYDKNDAIGFTPLEVADTPPFGSKLRLIVIYKYN---NFQEDFLDYCSNPSKTSIVILET 120

Query: 119 NEIKKNNTLRKIAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
               + + + K   K   +  I       PD       LI   ++   K IS EA + L+
Sbjct: 121 ENSLEEDPIYKYFSKKKDINNIYFIDFPLPDE-KDFRGLINAYIIKQGKKISSEAIEYLI 179

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
            N+  D  +  +EL K+ SY  +   +  + + D    +    I + ++A  +     + 
Sbjct: 180 NNINLDYDSLYSELGKICSY-NDKEYLNVEDIADFTYVSKNRNIFDFLDAVFERDRRKSF 238

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            +          S  L+   +  F  +  + I
Sbjct: 239 SIMHRLDQDASSSLTLM---MNNFMAIYYMKI 267


>gi|206901918|ref|YP_002250827.1| DNA polymerase III, delta subunit [Dictyoglomus thermophilum
           H-6-12]
 gi|206741021|gb|ACI20079.1| DNA polymerase III, delta subunit [Dictyoglomus thermophilum
           H-6-12]
          Length = 328

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 123/323 (38%), Gaps = 18/323 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++F G +K L+ E + + +K      +     V   A EI  +       + S  L  
Sbjct: 17  PVYLFTGEEKFLMEEALIELRKARFKDAN----YVAFFADEITWD--NIIPYLESPPLLG 70

Query: 82  KKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTSV 137
             +++++ +    K + +    +++ K + N  ++  +N   E  K  +  K       V
Sbjct: 71  -TQLVVVRHAQELKDQNMPKKLDLLFKKLTNTCVVFMANAEEEKPKKISYAKYIPPEGIV 129

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
                  D    L   I+E      KSI +E+   L  N          E+ K+ ++  E
Sbjct: 130 EFTKFRAD---ALRKWIKEKFQERNKSIDEESVYFLSTNYSDKMGVLMQEIDKICAFVGE 186

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +T + +K ++     +     ++A ++     A    D      +    +L   +++
Sbjct: 187 KESVTIEDLKKVLSTQ-EVAFYTFLDALLRRDFLLAFSGIDTLWNEGVYPQVILEIVIKQ 245

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + L +I+ +      S E+I  K + +   +K++I  ++L  +    + E    +    
Sbjct: 246 MRQLLRINALL-KEGYSSEEIANKLDLHPFVVKKSI--DALTKYTAAELMEIYFLLRQVD 302

Query: 318 HLARKKKYLEKNIIFQTILYIAQ 340
              +     ++ +I + +L + +
Sbjct: 303 IEYKTTAKDQRILIEKVLLKLGR 325


>gi|84496875|ref|ZP_00995729.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
 gi|84383643|gb|EAP99524.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
          Length = 331

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 103/321 (32%), Gaps = 12/321 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G ++ L  E        +   ++    ++ L A   +          +S SLF 
Sbjct: 16  PLVLISGPEQVL-AERGLAETVQLIKEHNPDVEVIRLYASAYE--PGELMVH-SSPSLFG 71

Query: 82  KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             K +++ +L     ++   L   +     +  +++      +   +    +K  + L  
Sbjct: 72  GDKAVVVHDLDEATDELQQDLLAYLAAPPEDVTLVVTHKGGNRGKKVLDTLKKARARLID 131

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +          D         ++  + EA Q L+  +G D     +  Q+L         
Sbjct: 132 APAIKTDRDKADFAMNEFRRAKRRATGEAVQALVDAIGKDLRELASACQQLI--ADTTGT 189

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I EQ V             ++ +A + G    A+ L    LA  +    ++    Q+ + 
Sbjct: 190 IDEQVVLTYHGGKVEATGFKVADAAVAGDAGEALRLLRHALAVGVDPVPIVAVLAQQIRQ 249

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L K+       +    + +        P + +  + SL+ W    +  +L  +       
Sbjct: 250 LIKVGSAGRGRSNDLARDLGMA-----PWQVDKARRSLQGWTAEALARSLQAVAAADFEV 304

Query: 321 RKKKYLEKNIIFQTILYIAQT 341
           +         + + +L I + 
Sbjct: 305 KGGGRDPVYAVERAVLTITRE 325


>gi|323140378|ref|ZP_08075308.1| DNA polymerase III, delta subunit [Phascolarctobacterium sp. YIT
           12067]
 gi|322415134|gb|EFY05923.1| DNA polymerase III, delta subunit [Phascolarctobacterium sp. YIT
           12067]
          Length = 356

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 27/296 (9%)

Query: 50  HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL------------------ 91
             P +   +   +   N+S     +NS   F  K +I +++                   
Sbjct: 48  DTPEADREITVFDKDTNLSGLQAAVNSYPFFCGKSLIFLKDEKLWAAKPAKANSAADAQD 107

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151
            T+ K ++ L  I+       +++I S ++ K   L K  +     L   C    +  L 
Sbjct: 108 DTDSKKMEQLAAIVSDVPDYCLLVISSKKMDKRTKLYKQLKAS--ALICPCERIKERDLD 165

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGG-----DRIASRNELQKLSSYCLEDILITEQHV 206
           D +           +++A   +   +            + E+ KL+ Y       TE  V
Sbjct: 166 DWLYAQAAAYGAHFTRDALAAISEYIEPVKEEIPLDLLQQEIGKLAIYASGRREWTEDDV 225

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            ++           + N  + GK+   + L       K  ++ L       F+L + +  
Sbjct: 226 LNVFALLPNASSFALTNYIMAGKLKQCLELL--ASERKHGTYILPLSATVAFKLRQVLRY 283

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           ++       +K I +      P     L+   R +++  + E L  +       R+
Sbjct: 284 LELKRRGYDQKGIMEELGMRSPYAYRFLERDSRRFDEKRLTEALLGLSDMNIKLRQ 339


>gi|52841576|ref|YP_095375.1| DNA polymerase III, delta subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628687|gb|AAU27428.1| DNA polymerase III, delta subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 341

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H + +  G D  LI E +N  K  +  +      ++ + + E          E N+ SLF
Sbjct: 17  HHLNVLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +  I  I  +  + +      L E +     +  III++  +     L+ +     +++
Sbjct: 74  YQTVILTIFFDKKTIDTTGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+  P +   +   I E L +   S      +++     G+ +A+   ++K++      
Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LIT     + + D     + E+I++ + G    AI +      +K     +L       
Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           Q +  +  +        +  +   +  I   + N+ Q +++  N  L+++
Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAIKRLNPLLLQQ 298


>gi|300741549|ref|ZP_07071570.1| DNA polymerase III, delta subunit [Rothia dentocariosa M567]
 gi|300380734|gb|EFJ77296.1| DNA polymerase III, delta subunit [Rothia dentocariosa M567]
          Length = 342

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 115/322 (35%), Gaps = 21/322 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +GS++        +  +    + +    LV +NA        T    + S SLF 
Sbjct: 32  PVIMLHGSEE-YFASRARERLRTAFYSTYPNADLVTINASTYTAGELTL---LASPSLFG 87

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             KII  +N++T  +  L+ +   I     + ++I++ +   +   L     K  + + I
Sbjct: 88  TAKIIDADNVATMSEDFLNDVLSYIAAPESDIMLIMQHSGGNRGKKLIDAIRK--NHVLI 145

Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197
            C P   +    + +       +++I   A ++L+A      +  ++  +LQ        
Sbjct: 146 PCKPLKAEREKTEFVTSEFRAAKRTIDPGALRLLVAATNDTAELASACAQLQ-----ADV 200

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE+ V         +    + +A + G    A+ L    LA+      LL     +
Sbjct: 201 AGNITEEIVNRYYGGRTEVTAFRVGDAAVTGNAAEALRLLRHALATGTEPIPLLGALAMR 260

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + + ++H ++  +     ++         P +    Q   R +    +   +  +    
Sbjct: 261 IRNIARVHHVRASAQELAREVGMA------PWQVEQAQRDGRRFTGEQIARIVQLLADAD 314

Query: 318 HLARKKKYLEKNIIFQTILYIA 339
              + +       + + +L IA
Sbjct: 315 AQLKGEGLDPVYAVERAVLAIA 336


>gi|54294234|ref|YP_126649.1| hypothetical protein lpl1299 [Legionella pneumophila str. Lens]
 gi|53754066|emb|CAH15539.1| hypothetical protein lpl1299 [Legionella pneumophila str. Lens]
          Length = 341

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 109/286 (38%), Gaps = 10/286 (3%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G D  LI E +N  K  +  +      ++ + + E          E N+ SLF +  
Sbjct: 21  VLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLFYQTV 77

Query: 85  I--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           I  I  +  + +      L E +     +  III++  +     L+ +     +++ I+ 
Sbjct: 78  ILTIFFDKKTIDTMGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALIIIA- 135

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
            P +   +   I E L +   S      +++     G+ +A+   ++K++       LIT
Sbjct: 136 QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPGTLIT 195

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
                + + D     + E+I++ + G    AI +      +K     +L       Q + 
Sbjct: 196 PYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT---QEIR 252

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +  +        +  I   +  I   + N+ Q +++  N +L+++
Sbjct: 253 TLLQLLFLMQQKMDIKIASNQLKIWTQRVNLYQSAVKRLNTSLLQQ 298


>gi|254525410|ref|ZP_05137462.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9202]
 gi|221536834|gb|EEE39287.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9202]
          Length = 333

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 114/298 (38%), Gaps = 32/298 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D       I +             ++  LN  +  + +   ++E+ +     
Sbjct: 2   PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVKKAFDEVLTPPFGD 60

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             +I+ ++N     +  + +    E+I      N  +I+++ +     +K    L+K+  
Sbjct: 61  GYRIVTLKNNPIFTAKNEDLRTKFEKIHDNIPQNTYLILQNTKKPDSRLKSTKFLQKLIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK  S+  I  +   K  L D   E        I K A ++++ ++G D     N
Sbjct: 121 NNLAKEKSFSLPDIWDFEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176

Query: 187 ELQKLSSY--CLEDIL-----ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           EL K  +Y   L +       +    VK I  D     I +II+  +Q  I  +++  ++
Sbjct: 177 ELAKAKTYLSALSNDSKSKLFLKSIDVKKIFSDNQS-NIFKIIDLLLQKNINESLIEINY 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293
            L    P+  L  G + + ++   I +     N + +KI         K I  ++R +
Sbjct: 236 CLQKGEPALRLNAGLISQIRIHAIIKLAVNSGNDNAKKICNLAGISNPKRIFFIQRKV 293


>gi|315604673|ref|ZP_07879736.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315313685|gb|EFU61739.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 331

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 107/326 (32%), Gaps = 21/326 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  GS+  L+   ++Q          DP +L   + +          + I S SLF 
Sbjct: 24  PIVLIKGSEGLLVDRALDQL--RFLAHQADP-NLERTDIVAATYQAGQI-DVIASPSLFG 79

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           + ++I+I +L T    +   L         +  + +       +   +     K    + 
Sbjct: 80  ESRMIIIRDLETMSDALAADLIAYASAPAPDVWLFLAHPGGNARGKKVIDAITKAKWPVI 139

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
            +    N    + LI   +   ++ +  EA Q L+  LG D  A    L +L        
Sbjct: 140 PAEPLKNDREKLALIASDVRSARRQMDNEAMQALVDALGNDPRAMAGALAQLL--SDVSG 197

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT + V             ++ +A + G    A+ L     A+ +    L+     KF+
Sbjct: 198 RITLEDVCRYQAGRVEATGYDVADAAVAGHSAKALTLTRHAFATGIAPQVLVAALAMKFR 257

Query: 260 LLEKIHIIKECSN-ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
            + K+ I    S+       + +                LR W+ N +      I     
Sbjct: 258 AMAKVSIGGGASSLKMAPWQVDRAR------------RELRGWSDNSLAAVFGAIATADA 305

Query: 319 LARKKKYLEKNIIFQTILYIAQTACK 344
             + +    +  I + I+ I +   +
Sbjct: 306 ETKGESRDPQRAIEKAIITICRLRGR 331


>gi|227542972|ref|ZP_03973021.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181194|gb|EEI62166.1| DNA polymerase III, delta subunit [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 302

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 97/307 (31%), Gaps = 21/307 (6%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G D  L+  + +   +              + +    +   +    + + +L  + +
Sbjct: 3   VIVGEDDFLVERVRDIIIQRTEGNPT-------VESHHCAELTGSMVYGLVTPTLMREAR 55

Query: 85  IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           +I+  +     K+V++    +    +    +I+  +   K   L    +K  +V  +   
Sbjct: 56  VIVFTHGELARKEVMEAFISVAADPVDEITVILMHSGGGKQKKLLTQLKKTATVNEVK-- 113

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
           P      M  + +        ++ +  Q +L  +G D       + +L      +  +T 
Sbjct: 114 PVKPRDRMRWVMDEFRSHNARVTPDVAQAVLEGVGSDLRELAAAIAQLV--SDNNGTVTV 171

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V+ +      +   EI +  + G+   A+      L    P   L          +  
Sbjct: 172 DSVRTMYQGVAEVSGFEIADLIVGGQTAKAVASTRRALQLGEPPVRLTSAIASNITAIAC 231

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           ++ ++                 + P K + L +  R W+++ +   +  +       +  
Sbjct: 232 LYSMRGAG---------AQVPGMPPWKADKLAKVARRWSEDSISRAVVILAELEEATKGW 282

Query: 324 KYLEKNI 330
              E ++
Sbjct: 283 GNPEYSV 289


>gi|78186148|ref|YP_374191.1| DNA polymerase III, delta subunit [Chlorobium luteolum DSM 273]
 gi|78166050|gb|ABB23148.1| DNA polymerase III, delta subunit [Chlorobium luteolum DSM 273]
          Length = 346

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 26/227 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLF 80
            V+ F+G +  L  E     +        +  +   +L   +I           +   +F
Sbjct: 15  PVYFFHGPESFLKEEFTALIRSTAFPDEAEAAANTHILYGPDIT--PGELVARASEYPMF 72

Query: 81  SKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           + +++I++              +K+        +       I++  + ++ K     K  
Sbjct: 73  TPRQLIVVRQFDKIKKPVGKDQQKQHEMKFAGYMKNPAEFTILVFDAEQLDK-----KDV 127

Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +K    L  S   D        L                 EA +   A +         E
Sbjct: 128 DKPPYSLLKSFRHDFPLLKTPDLFAAARA--HEAGWEFDPEALKAFTAYIQPSSREICQE 185

Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           ++KL++Y      +  IT   V + +  +    + E+  A     + 
Sbjct: 186 IEKLTTYASSRQGERRITAADVYECVGISKTYNVFELEKAVAGRNLR 232


>gi|256003374|ref|ZP_05428365.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM
           2360]
 gi|281417760|ref|ZP_06248780.1| DNA polymerase III, delta subunit [Clostridium thermocellum JW20]
 gi|255992664|gb|EEU02755.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM
           2360]
 gi|281409162|gb|EFB39420.1| DNA polymerase III, delta subunit [Clostridium thermocellum JW20]
 gi|316940203|gb|ADU74237.1| DNA polymerase III, delta subunit [Clostridium thermocellum DSM
           1313]
          Length = 336

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 112/328 (34%), Gaps = 33/328 (10%)

Query: 22  FVFIFYGSDK-------GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
            +++FYG ++       G I E+I            D   L  +  +E +   S      
Sbjct: 17  KLYLFYGEEEYLKKFYLGKIEEIILS---------RDQTGLNKI-VIEGKAEASKIIEAC 66

Query: 75  NSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   F++KK+++++           +     D L   +     +  ++     I     
Sbjct: 67  ETMPFFAEKKLVVVKKSELFNSKKSGSSNNKNDELITYLQNIPEHTCLVFYEENIDNRLK 126

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           +    +K+  V+           L+    +      K+I +     L+           N
Sbjct: 127 ITSAVKKYGMVVEFPFQK--PAELVKWAIKVFKSYGKAIDENTASYLIDTCEEGMTEILN 184

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E+ K+  Y  E   +T   +K +   +    I ++I+A  + K+  A+ L +  +  K P
Sbjct: 185 EINKVVLYLGESQKVTVDSIKKVCTKSIKSRIFDLIDAIAERKLDLALKLLNDMIILKEP 244

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +L    ++ + L ++  +     +  ++   K    I P     +      ++   +
Sbjct: 245 MPKILFMIAKQLKQLLEL-KLLCSKGMDAKEACSKMG--INPYAAKKMVRQTDCFSLEKL 301

Query: 307 RETLHK---IDHRIHLARKKKYLEKNII 331
           +E + +   +D  I   +        I+
Sbjct: 302 KEAIRQALELDLSIKTGQINDRTAVEIL 329


>gi|125973555|ref|YP_001037465.1| DNA polymerase III, delta subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713780|gb|ABN52272.1| DNA polymerase III, delta subunit [Clostridium thermocellum ATCC
           27405]
          Length = 342

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 112/328 (34%), Gaps = 33/328 (10%)

Query: 22  FVFIFYGSDK-------GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
            +++FYG ++       G I E+I            D   L  +  +E +   S      
Sbjct: 23  KLYLFYGEEEYLKKFYLGKIEEIILS---------RDQTGLNKI-VIEGKAEASKIIEAC 72

Query: 75  NSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   F++KK+++++           +     D L   +     +  ++     I     
Sbjct: 73  ETMPFFAEKKLVVVKKSELFNSKKSGSSNNKNDELITYLQNIPEHTCLVFYEENIDNRLK 132

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           +    +K+  V+           L+    +      K+I +     L+           N
Sbjct: 133 ITSAVKKYGMVVEFPFQK--PAELVKWAIKVFKSYGKAIDENTASYLIDTCEEGMTEILN 190

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E+ K+  Y  E   +T   +K +   +    I ++I+A  + K+  A+ L +  +  K P
Sbjct: 191 EINKVVLYLGESQKVTVDSIKKVCTKSIKSRIFDLIDAIAERKLDLALKLLNDMIILKEP 250

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +L    ++ + L ++  +     +  ++   K    I P     +      ++   +
Sbjct: 251 MPKILFMIAKQLKQLLEL-KLLCSKGMDAKEACSKMG--INPYAAKKMVRQTDCFSLEKL 307

Query: 307 RETLHK---IDHRIHLARKKKYLEKNII 331
           +E + +   +D  I   +        I+
Sbjct: 308 KEAIRQALELDLSIKTGQINDRTAVEIL 335


>gi|193211940|ref|YP_001997893.1| DNA polymerase III subunit delta [Chlorobaculum parvum NCIB 8327]
 gi|193085417|gb|ACF10693.1| DNA polymerase III, delta subunit [Chlorobaculum parvum NCIB 8327]
          Length = 346

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 88/252 (34%), Gaps = 23/252 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLF 80
            V+ F G +  L  E+  Q K ++  +  +   + ++L   ++   +    +  +   +F
Sbjct: 15  PVYFFQGPESWLKEEIETQLKASLFPSESEAALNTIMLYGPDVT--LGQIISAASEYPMF 72

Query: 81  SKKKIILIENLSTEKKVL---------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           ++KK++++      KKV          + L   +       ++++ + ++ K     K  
Sbjct: 73  TEKKLVVVRQFDKLKKVTGKTESLHQEESLVRYLANPASFAVLVLDAEQVDK-----KEL 127

Query: 132 EKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           EKF      S   D     H      E           +A +     +         E++
Sbjct: 128 EKFPYKQLKSFRHDFPAVKHPDVFAAERAREAGWEFDPDALKTFAGYIEPSSRLICQEIE 187

Query: 190 KLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           KL+ Y  +      IT   V   +  +    + E+  A +   +     +A   +  +  
Sbjct: 188 KLTLYVTDKRTERRITLDDVCQCVGISKKYNVFELEKALVGKNLRLCSGIALMIMEQEGQ 247

Query: 247 SHALLHGFLQKF 258
              L++  ++ F
Sbjct: 248 KEGLMN-IVRYF 258


>gi|157414253|ref|YP_001485119.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9215]
 gi|157388828|gb|ABV51533.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 333

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 114/298 (38%), Gaps = 32/298 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D       I +             ++  LN  +  + +   ++E+ +     
Sbjct: 2   PIQILWGNDLNAQNTFIQKLIDKEVSKEWKEINVTNLNGDD-DEQVKKAFDEVLTPPFGD 60

Query: 82  KKKIILIEN----LSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             +I+ ++N     +  + +    E+I      N  +I+++ +     +K    L+K+  
Sbjct: 61  GYRIVTLKNNPIFTAKNENLRTKFEKIHNNIPQNTYLILQNTKKPDSRLKSTKFLQKLIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK  S+  I  +   K  L D   E        I K A ++++ ++G D     N
Sbjct: 121 NNLAKEKSFSLPDIWDFEGQKRFLEDAANEM----NIKIDKNAAELIIDSVGNDSFKLIN 176

Query: 187 ELQKLSSY-------CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           EL K  +Y           +++    VK I  D     I +II+  +Q  I  +++  ++
Sbjct: 177 ELAKAKTYLSALSSDSKSKLVLKSIDVKKIFSDNQS-NIFKIIDLFLQKNINESLIEINY 235

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293
            L    P+  L  G + + ++   I +     N + +KI         K I  ++R +
Sbjct: 236 CLQKGEPALRLNAGLISQIRIHAIIKLAVNSGNDNAKKICNLAGISNPKRIFFIQRKV 293


>gi|148358878|ref|YP_001250085.1| DNA polymerase III subunit delta [Legionella pneumophila str.
           Corby]
 gi|296106925|ref|YP_003618625.1| DNA polymerase III subunit delta [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280651|gb|ABQ54739.1| DNA polymerase III, delta subunit [Legionella pneumophila str.
           Corby]
 gi|295648826|gb|ADG24673.1| DNA polymerase III subunit delta [Legionella pneumophila 2300/99
           Alcoy]
          Length = 341

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H + I  G D  LI E +N  K  +  +      ++ + + E          E N+ SLF
Sbjct: 17  HHLNILIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +  I  I  +  + +      L E +     +  III++  +     L+ +     +++
Sbjct: 74  YQTVILTIFFDKKTIDTTGKKILSEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+  P +   +   I E L +   S      +++     G+ +A+   ++K++      
Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LIT     + + D     + E+I++ + G    AI +      +K     +L       
Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWILT--- 248

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           Q +  +  +        +  +   +  I   + N+ Q +++  N  L+++
Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298


>gi|254457784|ref|ZP_05071212.1| DNA polymerase III, delta [Campylobacterales bacterium GD 1]
 gi|207086576|gb|EDZ63860.1| DNA polymerase III, delta [Campylobacterales bacterium GD 1]
          Length = 320

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 18/285 (6%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           + K  +N  +S+  F+F+G    LI     +   NI       F     +    +     
Sbjct: 6   LDKHIQNDSISNS-FVFFGESSFLIDTYTKKLS-NIEDASALTFYYDEYDFKSAKA---- 59

Query: 70  FWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
               ++  SLF  + +++I+      KK LD L ++  KN  N  I         ++   
Sbjct: 60  ---HLSQASLFGGQNVLVIKSEKKVPKKELDDLIDLCEKNQDNFFIYAYYG---SDHKTY 113

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
             A    + +++  +  N    +++I + +     ++ K +   LL    GD   + NE+
Sbjct: 114 SKAFSKNNTMSVRFFSPNHHESINIIADVVKEKNVNMDKYSIAHLLNIHNGDVALAYNEI 173

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +K   Y   D +IT + ++ ++     + +++++   +  K  +        L       
Sbjct: 174 EKFRVY---DKVITTKDIEHLVSGLGEISMDDLLKKILSKK--DFTKDLINILEHGEDEI 228

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
            +          L   +I    +       I         +    
Sbjct: 229 RVATALTAYLTQLYMFNIYIRVNGAPNALEILGYPAPKFVVDEKA 273


>gi|229031973|ref|ZP_04187958.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271]
 gi|228729328|gb|EEL80320.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271]
          Length = 194

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 72/189 (38%), Gaps = 4/189 (2%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   +          I   A  +LL  +G +      E+ KL+ Y      I+ + V 
Sbjct: 4   QDVQKWVVARADEVHVHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEISPKLVA 63

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           +++  +    +  +    ++  I  A+ + D     +     LL   + +F+LL +   +
Sbjct: 64  ELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLHQ---V 120

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327
           KE     + +    +   + P +  +     + ++   +++ + ++    + + K   ++
Sbjct: 121 KELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMD 179

Query: 328 KNIIFQTIL 336
           K ++ +  L
Sbjct: 180 KKLVLEFFL 188


>gi|116490996|ref|YP_810540.1| DNA polymerase III, delta subunit [Oenococcus oeni PSU-1]
 gi|290890476|ref|ZP_06553551.1| hypothetical protein AWRIB429_0941 [Oenococcus oeni AWRIB429]
 gi|116091721|gb|ABJ56875.1| DNA polymerase III, delta subunit [Oenococcus oeni PSU-1]
 gi|290479872|gb|EFD88521.1| hypothetical protein AWRIB429_0941 [Oenococcus oeni AWRIB429]
          Length = 331

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 116/311 (37%), Gaps = 22/311 (7%)

Query: 38  INQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKKKIILIENL----- 91
             QF   +  +  + F        ++    I     ++++ S  + ++I+++EN      
Sbjct: 29  TEQFSNLLENSIDENFRAWDFVRADVNDTGIKEVLADVSTLSFNASRRIVIVENPLFLTA 88

Query: 92  --STEKKVLDCLEEIIIKNICNHIIIIKSNEI---KKNNTLRKIAEKFTSVLAISCYPDN 146
             S EK   + L + +      + +II +      K+  T++ + +   +   +   P +
Sbjct: 89  KNSLEKSEENLLLKYLNNPEGENSLIINAVNFSLDKRKKTVKSLIKTAEN---VDFKPLD 145

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  ++ ++++  L+   SI           L  +     N L KL  Y  ++ +I    +
Sbjct: 146 ERQILQIVKKRFLVADISIEDAVLNYYFRRLAFNLRLIINNLDKLLLY-GQNHIIDNHVI 204

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             +I         ++I A  Q K    + + +  +        +    L +++LL +   
Sbjct: 205 DFLIAPESTESAFDLIEAINQKKPGKVLKIYEELIDRGEAPIRINALLLSQYRLLIQAKS 264

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           +K  ++ +  +++     +I P +  +  +   +     +  +   +       +  + L
Sbjct: 265 LK-LNDQNLSRLL-----HIHPYRAKLANQLASLKTFGELSNSFLNLSDIELKLKSTR-L 317

Query: 327 EKNIIFQTILY 337
           +  ++F+  L 
Sbjct: 318 DPKMLFEIFLS 328


>gi|54297255|ref|YP_123624.1| hypothetical protein lpp1300 [Legionella pneumophila str. Paris]
 gi|53751040|emb|CAH12451.1| hypothetical protein lpp1300 [Legionella pneumophila str. Paris]
          Length = 341

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 110/290 (37%), Gaps = 10/290 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H + +  G D  LI E +N  K  +  +      ++ + + E          E N+ SLF
Sbjct: 17  HHLNVLIGQDHYLIDEALNNIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +  I  I  +  + +      L E +     +  III++  +     L+ +     +++
Sbjct: 74  YQTVILTIFFDKKTIDTMGKKILSEYLKSTNSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+  P +   +   I E L +   S      +++     G+ +A+   ++K++      
Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKITLSNTPG 191

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LIT     + + D     + E+I++ + G    AI +      +K     +L       
Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           Q +  +  +        +  +   +  I   + N+ Q +++  N  L+++
Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298


>gi|332707964|ref|ZP_08427964.1| DNA polymerase III, delta subunit [Lyngbya majuscula 3L]
 gi|332353281|gb|EGJ32821.1| DNA polymerase III, delta subunit [Lyngbya majuscula 3L]
          Length = 332

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 111/301 (36%), Gaps = 16/301 (5%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +++G D   + + +++ ++++       F+   ++  +    I    N++ +       +
Sbjct: 7   LYWGKDDFAMAQAVDKLRRSLVDPNWASFNYDKISPDQPDAVIQAL-NQVMTPPFGIGGR 65

Query: 85  IILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIAEKFT 135
           ++ + + +        +L  LE  I     + ++++ +       +K    L++ A+   
Sbjct: 66  LVWLVDTTLCQQCSDNLLAELERTIPVIPKHSVLLLTTPHRPDPRLKSTKLLQQYAQIQE 125

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             L I  +      L+  ++   +     ++  A  +L  ++  D     NEL+KL  Y 
Sbjct: 126 FAL-IPPWK--TQQLVHRVKSYSVEFGIKLTNSAAVLLAESVSNDTRQLFNELEKLRLYA 182

Query: 196 -LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   ++E  V  ++       ++ +  A  QG    A+ L    +    P   ++   
Sbjct: 183 LYDSQPLSESTVATLVVANTQNTLQ-LAEAIRQGDGAKALELLAALINHNEPPLKIVATL 241

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           + +F+    + ++          I      N  P +   L++ +   +   +  TL  + 
Sbjct: 242 ITQFRTWLWVKLLVSEGETDPNAIANTANIN-NPKRVYFLKQDVEFLSPKQLISTLGVLL 300

Query: 315 H 315
            
Sbjct: 301 E 301


>gi|320536056|ref|ZP_08036114.1| DNA polymerase III, delta subunit [Treponema phagedenis F0421]
 gi|320147106|gb|EFW38664.1| DNA polymerase III, delta subunit [Treponema phagedenis F0421]
          Length = 357

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 122/350 (34%), Gaps = 48/350 (13%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKG-------LIFELINQFKKNISITYHDPFSLVVLNALEI 63
           +K+ +   ++  V++F GS+ G        I E          I               I
Sbjct: 17  KKNKEGEVMAAPVWLFLGSEIGEKNTAIEKIKERAATLG---VIDVQ--------TFYAI 65

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEII-----IKNICNHIIIIKS 118
              I    + + + SLFS  + I+  +    KK  + +E +       +N  +  +I+  
Sbjct: 66  DTRIHDVVSLLQNGSLFSDVRFIIFRSAELIKK-KEEIEILTTWIKSAENTTDSFLIL-- 122

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDN------KIHLMDLIEESLLIGQKSISKEAKQI 172
             +    ++ K  E      AI            +    + I+        +I  EA   
Sbjct: 123 --LSDETSIDKKIE-----AAIPPTQKKIFWELFENKKQEWIKNFFSKEGFTIENEAVAT 175

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           LL  +  +  A +     L  +  +   I+   +++++          + +A  + K+  
Sbjct: 176 LLELVENNTDALKATCTHLVLFFKKGARISAADIEELLSHNKEESPFTLFDALTKKKLEL 235

Query: 233 AIMLADFFLASK-MPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMK 290
           A+ +    L SK      ++ G    F+ L   H +  + +  + +  ++K       + 
Sbjct: 236 ALDINRKLLLSKDSSPIQIIAGLTYTFRRLYDWHVLQLQSAGNADDSSLKKAG----FIS 291

Query: 291 RNILQE---SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
           +  +++   +  +W+K  V + +  ++      R    + +  + +  LY
Sbjct: 292 KKAIEQYRRAAAVWDKAAVLKIIALLNKTDFEIRTSGTVLQTALMEICLY 341


>gi|254413966|ref|ZP_05027734.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196179102|gb|EDX74098.1| DNA polymerase III, delta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 309

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 95/255 (37%), Gaps = 19/255 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77
             F   G+D       I QF +       DP    F++   +  +++           + 
Sbjct: 2   KAFTLTGNDT----YRITQFIQQQKHNL-DPIWAIFNVQNFSFDQLEAA----LMYAQTL 52

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
            L+ ++K+++I    T     + L  ++  N  + +I+I    +     + K+ ++ T+V
Sbjct: 53  PLYGQEKLLVIRGKIT-ANHFELLNTLLSINTPSTVILIT--PLDTRTRIGKLIKRATTV 109

Query: 138 LAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +C P      L   +++       ++       + +  G +   +  EL+KL++ C 
Sbjct: 110 KQFNCTPSWKINELATNVQQESRTLGVNLPLAVATYIASATGSNSARTTQELEKLAT-CR 168

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +T   +K +I + +   + E+ NA     +     L+   L+   P   +    L 
Sbjct: 169 GEETLTFGEIKQLIPNLNHSTL-ELANALKHKDVLQVNQLSQQLLSVGEPPLKITATLLT 227

Query: 257 KFQLLEKIHIIKECS 271
             +   K+    +  
Sbjct: 228 FIRTWLKLKAALKAG 242


>gi|320539655|ref|ZP_08039319.1| DNA polymerase III, delta subunit [Serratia symbiotica str. Tucson]
 gi|320030267|gb|EFW12282.1| DNA polymerase III, delta subunit [Serratia symbiotica str. Tucson]
          Length = 343

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 8/220 (3%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++  G++  ++ E      +  +         + L+A     +    ++   S +LF+ +
Sbjct: 21  YLLSGNEPLMLQE-SQDLIRQAAQQQFSEHHSISLDAHT---DWDAIFSICQSMNLFASR 76

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +  +++         + D L ++      + ++I++   + K        +      + +
Sbjct: 77  QTLLLMFPENGPTAPIGDQLIKLSALLHNDILLILRGPRLTKAQENSAWFKSLSPKAVCV 136

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           SC    ++ L   +     + +  +   A Q+L     G+ +A    L++LS     D  
Sbjct: 137 SCQAPEQMQLPRWVAARAKLMKLKLDNAANQLLCYCYEGNLLALSQVLERLSL-LHPDGK 195

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           +T   V+  + D         ++A + GK   A  +    
Sbjct: 196 LTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRAWHILQQL 235


>gi|291287146|ref|YP_003503962.1| DNA polymerase III delta [Denitrovibrio acetiphilus DSM 12809]
 gi|290884306|gb|ADD68006.1| DNA polymerase III delta [Denitrovibrio acetiphilus DSM 12809]
          Length = 301

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 8/232 (3%)

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           N   F+N INS SLF + K  ++++    K   D + +   K+     +I  + E+K + 
Sbjct: 44  NPEFFFNFINSASLFQENKAAIVKSAHKIKNAADVITKC--KDCVETHLIFLTPELKISK 101

Query: 126 TLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
            + K  ++      I           L   I +        I   +   +     GD   
Sbjct: 102 EINKALKEAGFETEI---EKKARKYDLTGKILQMFADADFRIDSSSAAEINEIFEGDLKQ 158

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
             NE++KL+ Y       +   V   +       I   I+A          ++ D F++S
Sbjct: 159 ITNEIEKLTLYFAYKKPKSAADVIKAVTARKHDSIFTFIDAYTARSRNVCNVMLDGFISS 218

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII-PMKRNIL 294
               + L+    ++ + L     +KE    +   ++ K +  +      +++
Sbjct: 219 GENLNILISLLFKRMRELYLYINLKEQVKENRPWMLDKLKAGVRAWRHEDLI 270


>gi|116670790|ref|YP_831723.1| DNA polymerase III subunit delta [Arthrobacter sp. FB24]
 gi|116610899|gb|ABK03623.1| DNA polymerase III, delta subunit [Arthrobacter sp. FB24]
          Length = 317

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 99/332 (29%), Gaps = 27/332 (8%)

Query: 22  FVFIFYGSDKGL---IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            V +  G ++ L     + I    +           +  LNA   +    +    + S S
Sbjct: 5   RVVLIGGPEEYLGIRAMDRIRSQVRAAQPDV----EITRLNAGSYE--PGSLAMNV-SPS 57

Query: 79  LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LF + K+I +E+  +     L    + +     + +++++     +   L     K    
Sbjct: 58  LFGESKLIEVESAEAMNDAFLTDALKYLADPEPDAVLVVRHGGGVRGKKLLDAI-KAAGW 116

Query: 138 LAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
             + C P          +        + I  EA   L+  +G +         +L     
Sbjct: 117 PVVDCQPLKKDADKSAFVAAEFKAASRRIEPEAVHALVNAVGANLSELAAACSQLI--AD 174

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +    V             ++ +A + G    A+      LA+      L+     
Sbjct: 175 AATAVDTDMVDRYYGGRIEATAFKVADAALAGNGPLALSTLRHALATGADPVPLVAALAA 234

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKI 313
           K     +       +  S  +I ++       M+  +++++   +R W    +  ++   
Sbjct: 235 KL----RTVAKVAGAQGSSAQIARQLG-----MQPWLVEQAQRDVRRWTPEGLVRSIQVT 285

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
                  +         +   +  IA +  +N
Sbjct: 286 AEADAQVKGLSRDPVYAVEHAVTVIATSVRRN 317


>gi|325956535|ref|YP_004291947.1| DNA polymerase III subunit delta [Lactobacillus acidophilus 30SC]
 gi|325333100|gb|ADZ07008.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus 30SC]
          Length = 328

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 121/315 (38%), Gaps = 30/315 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN   ++   + +  D  +   L   + K       D F       ++ + + +      
Sbjct: 8   KNTNNNNPHTLIWSEDDFVNDYLAKSYAK------EDQFKDCEHVIIDCETDGLDELIAS 61

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122
           +  +SLFS++K+I+++N         KK    + ++I       ++ + I+II S E + 
Sbjct: 62  LTESSLFSEQKLIMVKNPFFLTAKVPKKYQKQINDLIKIFENLSDLEDTIVIIASYEKLD 121

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K   K  +V+   I  Y      +  + +  +     +I++ A Q+L+      
Sbjct: 122 RRKKLTKTVLKQFNVVEPKIRSYE-----VGAITKALIKAEGYTITQSALQLLIERSDQV 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                +  QKL     ++  ITE+ V   +  +    I  I+ + +      A+   +  
Sbjct: 177 MDTVLSNYQKLKMTATDNK-ITEKSVMQNVDLSLAQNIFAILESALNRNYQEAVDRLENQ 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299
           L        LL  F  + +LL  + I+ +    S  +I++     + P + +  L+  ++
Sbjct: 236 LREGTSPIQLLAVFENQLELLLVVKILAQRGR-SEPQIVKDLG--VHPYRVKLALKNRVK 292

Query: 300 IWNKNLVRETLHKID 314
           I     +      ++
Sbjct: 293 ISKLEKLLRDAIDLE 307


>gi|119025879|ref|YP_909724.1| hypothetical protein BAD_0861 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765463|dbj|BAF39642.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 339

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 116/348 (33%), Gaps = 33/348 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +    K    +    + YG D  L  + +   K      Y D    + L+A     +  T
Sbjct: 11  LNGMPKPSAATTPFHLVYGGDSYLNDQTVRDLKHEAQRRYPD-AETIELDAA--NADHYT 67

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII---KSNEIK 122
           F +E  S SL + + I+++ NL   ++K+ D +        K   +  I+I   +     
Sbjct: 68  F-DEAVSPSLLADRAIVIVTNLQNADEKLGDAMVSYCRQACKEPADACIVICQHEGGVKG 126

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLAN 176
           K      + E+ T   A   Y D    L         + +     ++ +   A Q L+A 
Sbjct: 127 KR-----LVEQLTKAGA---YKDAVADLKKPEAKLNFVMQCFERRKRRVEPMAAQQLVAV 178

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           LG         + +L  +  +D  +T   V   +     +    + +  + G+  +AI+ 
Sbjct: 179 LGDRTGELAAMVGQLC-FDFDDNPMTLDRVNQYLTSNPQVDGFRVADLALSGRTADAIIA 237

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               +       AL+           K+  + + S +    I     K    + +N    
Sbjct: 238 MRSSVEQGTAPIALIGALA------MKLRTMAKASAVRAGTISTAEAKTNPWVLKNA-TR 290

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            L  W  + +   +  +      ++         + ++I  I++    
Sbjct: 291 QLSGWTSSGMSACIQMLAWADEQSKTNGSDPVYALERSIELISRKGRA 338


>gi|224541315|ref|ZP_03681854.1| hypothetical protein CATMIT_00475 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525752|gb|EEF94857.1| hypothetical protein CATMIT_00475 [Catenibacterium mitsuokai DSM
           15897]
          Length = 319

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 105/288 (36%), Gaps = 29/288 (10%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG +K L+ + +   KK    T  D   +V        K I     +  +    ++ 
Sbjct: 3   IVLYGEEKLLLAQRLEDLKKKYQCTSDDMNYMVYHAGETPMKEI---IEDALTQPFLTEY 59

Query: 84  KIILIENL------STEKKVLDC-----LEEIIIKNICNHIIII--KSNEIKKNNTLRKI 130
           K+++++N         +KK++         + I  +    I +I        +   + K 
Sbjct: 60  KMVVLKNPIFLTKEKPKKKLVTDEDIKLFLDYIEHDNPTTIFVIYQDQRNFDERKKVVKS 119

Query: 131 AEKFTSVLAISCYPDNKIHLMDL---IEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
             K         Y   K+    L     E+++    SI  +A  +LL   G D +   N+
Sbjct: 120 LRKHAKW-----YEMEKLTFDQLYKATREAIIHRNASIEDDALTLLLDRCGNDLLTISNQ 174

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++KL  Y      I ++ V+ ++       + ++ NA +   + N + +    ++     
Sbjct: 175 VEKLCLYTHN---IKKEDVERLVPPRVEEDVFKLTNALMNHDLRNTMRVYQDLISQNHEP 231

Query: 248 HALLHGFLQKFQLLEKIHIIKECS--NISFEKIIQKTEKNIIPMKRNI 293
             L+       + L ++ I+ +    +      +    + I P+++N 
Sbjct: 232 LQLIGLIANSLRNLYQVSIMSKKGYRDTDIASALGLNPRAIYPIRKNA 279


>gi|332880242|ref|ZP_08447920.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681687|gb|EGJ54606.1| DNA polymerase III, delta subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 341

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 98/315 (31%), Gaps = 17/315 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I ++               F+L V    ++  +     N      + +
Sbjct: 24  PVYYLMGEEAYYIDKVSEFIVDTALKEEEKDFNLTVCYGTDVTADE--VINAAKRFPMMA 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +++++L+   +      + L   +     + ++I   K   + K   L   A+   + + 
Sbjct: 82  ERQVVLVRE-AQSLPGKERLSFYLEHPQTSTVLIFCHKHGVLDKRKKL--AADIQKTGVL 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198
                     L   +   L     ++ + A  ++  ++G D      EL KL       +
Sbjct: 139 FESKKLYDSQLPGFVTTYLRRKGVAMEQNAVMMVCESVGSDLSRLSGELDKLMLALPEGE 198

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             I    V+  +  +      E+++A +   +     +  +F  +         L     
Sbjct: 199 TRIGAAFVEQHVGISKDFNNFELVSALVAKDVLKVNRIVKYFNDNPKNFSLQLTLSVMFG 258

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  L   +   + +       +++            +  +++ ++   V + + K+   
Sbjct: 259 FFSNLMVAYYAPQRTEEGIADWVEQPR----WQVARNILPAMQKYSGVKVMQIIGKLRET 314

Query: 317 IHLARKKKYLEKNII 331
              ++    L   I 
Sbjct: 315 DAKSK---GLGNTIA 326


>gi|301154879|emb|CBW14342.1| DNA polymerase III, delta subunit [Haemophilus parainfluenzae T3T1]
          Length = 345

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 115/313 (36%), Gaps = 15/313 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G+D  L+ E  +   +   +   D  + + ++      +         S  LF 
Sbjct: 19  KVYFLVGTDPLLLSESEDLIHQAALLQGFDEKNQITID---TNTDWPALIEASQSVGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTS 136
            K+I ++        +L   L++ I     + ++++   ++ K    ++      +    
Sbjct: 76  NKQIFILNLPENLTALLQKNLQQFISGLNEDSLLVLTLPKLSKAAEKQEWFIQVNQLEPQ 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + ++C   N   L   ++           +EA Q+L  +   + +A +  LQ L     
Sbjct: 136 AVIVNCQTPNSEQLSRWVKHRTKNMGLLADEEAIQLLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   VK ++  + V    + I+A + GK   +  +     A  +    LL    +
Sbjct: 195 PDHKLTYNRVKSVVEQSSVFTPFQWIDALLSGKANRSKRILRGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLE-----KIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310
           +   L      ++      +++  + +    ++  I   +R +   +++ +    + E L
Sbjct: 255 ELLTLLELTKPQLRNPSLNTSLPTQTLKSDFDRLKIWQNRRPLYTAAIQRFTYQKLFEIL 314

Query: 311 HKIDHRIHLARKK 323
            ++     + +++
Sbjct: 315 QELADIERITKQE 327


>gi|322385872|ref|ZP_08059515.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321270157|gb|EFX53074.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 345

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 124/341 (36%), Gaps = 39/341 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77
            + I  G D G    L ++F K I     D     F +   +  +++ +       + S 
Sbjct: 17  PLTILTGDDLGQFELLKDEFMKQIHYDPADLNVTLFDMKETSYADVELD-------LVSL 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +KII++++ +            + L   E+ +        ++I +  ++     L
Sbjct: 70  PFFADEKIIILDHFADLTTAKKRYLSDEELKSFEQYLEAPSSTTKLVIFAEGKLDSKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            KI ++   +   +     +  L     +   +     + +A   LL   G       +E
Sbjct: 130 VKILKRDGQIFEAA--EIKEADLRQYFTKQAQLEGLDFAPKAFDHLLIKSG----FHFSE 183

Query: 188 LQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           + K    L SY  E   I+ + + + I  T    I ++    +Q +I  A  L       
Sbjct: 184 ISKNLAFLKSYK-ESGQISLEDIAEAIPKTLQDNIFDLTQLILQKQIDAARSLVRDLTLQ 242

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESL 298
                 L+   L +F++  ++ I+ + +  S  +I+         K      +  L+++ 
Sbjct: 243 GEDEIKLIAIMLGQFRMFTQVKILAD-NGRSESQIVSDLSDYLGRKMNPFQVKFALKDA- 300

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           R  + N ++ TL  +    +  +   Y +  +    +L IA
Sbjct: 301 RGLSLNFLKRTLTCLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|170757391|ref|YP_001782601.1| DNA polymerase III subunit delta [Clostridium botulinum B1 str.
           Okra]
 gi|169122603|gb|ACA46439.1| DNA polymerase III, delta subunit [Clostridium botulinum B1 str.
           Okra]
          Length = 343

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 131/319 (41%), Gaps = 26/319 (8%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +             + +  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTLR---KIAEKFTSVLAISCYPDN--KIHLMDLIEESLLIGQKSISKEAKQIL 173
               K + +    K  +K   ++ I    D     +L   +E+      K ISK   +  
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIVTI----DKIKGENLEKRVEKFFSDRGKKISKIPLKAF 178

Query: 174 LANLGGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +  +  + ++   NE++KL +Y + +  I ++H+K++  +     I ++IN   + K   
Sbjct: 179 IQTIENENLSYIENEVEKLCTYVMHE-EIEKKHIKEMYENIKDEDIFDLINFISEKKPRK 237

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           AI + +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   +
Sbjct: 238 AIEILNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEDLAKELK--IHPYGCS 294

Query: 293 ILQESLRIWNKNLVRETLH 311
           +L    + +    + +++ 
Sbjct: 295 VLMSQSKKFTLKQIEKSIE 313


>gi|257431009|ref|ZP_05607389.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257278439|gb|EEV09075.1| DNA polymerase III subunit delta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|329728361|gb|EGG64798.1| DNA polymerase III, delta subunit [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 191

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 3/192 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  +   I+  L    K I ++A  + +   G +      E++KL  +  +   I +Q V
Sbjct: 3   EEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDV 62

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             II  +    +  +     + K   AI L    +  K     LL      ++L  +  I
Sbjct: 63  NQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKI 122

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           + +    S ++I +     + P +  +    +R +  + +   +       +  +     
Sbjct: 123 LSQ-KGYSGQQIAKTIG--VHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMD 179

Query: 327 EKNIIFQTILYI 338
           ++ I+   IL +
Sbjct: 180 KQLILELFILSL 191


>gi|270284194|ref|ZP_05965712.2| DNA polymerase III, delta subunit [Bifidobacterium gallicum DSM
           20093]
 gi|270277292|gb|EFA23146.1| DNA polymerase III, delta subunit [Bifidobacterium gallicum DSM
           20093]
          Length = 321

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 107/324 (33%), Gaps = 25/324 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I  G D  L  + + +  +  S  YH    +V L+A          + E  S SL S  
Sbjct: 10  VIVQGGDAFLNRQQVLELVRQASE-YHPERDVVELDATTA---TPMMFEEAISPSLLSDA 65

Query: 84  KIILIENLST-EKKVLDCLEEIIIK---NICNHIIII--KSNEIKKNN--TLRKIAEKFT 135
             + + N+   ++  ++ + E + +         +++  ++    K     LRK      
Sbjct: 66  ANVTVWNVQNADEPFINAILEWLKQAGHEPDPSFVVVSKEAGPKGKAVIERLRK---TGA 122

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            VL +         L   + +     Q+ I   A Q L+A  G D  A     ++L    
Sbjct: 123 QVLDVPDLKKTDAKLN-YVLQRFERHQRRIEPMAAQQLVAVFGEDIGALNAMCEQLCF-- 179

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D  +T   V+  +     +    + +  + G++ +A++     +A       L+    
Sbjct: 180 DFDEPVTLDLVERYLVANPQVTGFNVADLALAGRVQDAVIALRNAVAQGTEPILLVSALA 239

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  + +   +   +I     K    M +N   + L  W    +   +  +  
Sbjct: 240 ------IKLRSLAKAGAVKAGQITAAETKMAPWMLKNA-TKQLHGWTSPGLARCIRLLAW 292

Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339
                +         + + +  IA
Sbjct: 293 ADEQCKTNGADPLYALERCVSSIA 316


>gi|218442643|ref|YP_002380963.1| DNA polymerase III subunit delta [Cyanothece sp. PCC 7424]
 gi|218175001|gb|ACK73733.1| DNA polymerase III, delta subunit [Cyanothece sp. PCC 7424]
          Length = 319

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 22  FVFIFYGSDKGLIFE----LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D   I +     +NQ   +     +  FS    +  +      +      S 
Sbjct: 2   PILLLTGDDLYTIEQVIKSRVNQLPLSTRSLNYHRFSGT-CSPSQQDYFADSLM-AARSL 59

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-----NTLRKIAE 132
            L S  KII+I+    +  +     EI+        +I  S  + K      + LR  A 
Sbjct: 60  PLGSDSKIIVIDCDFKQLNISLEWLEILPLLPQTTTLIFCSFSLDKRLKVVKSLLRLAA- 118

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                L I  +P  +  +  LI +       ++S      L+  +G D     +ELQKL+
Sbjct: 119 -HEEYLLIPPWPTEE--ISQLITKRASHYHLNLSPLIINYLVLAIGNDTARIDSELQKLT 175

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                   +T   VK ++       I ++  A  +G  Y+   L +  L        ++ 
Sbjct: 176 L----LPNLTLVQVKGLVSSHTETGI-KLAAALRKGNAYSTARLLNQLLDKGEHPLIIVA 230

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             L +F+    +         +  +I    +      +   L++ ++  N   +   L  
Sbjct: 231 SLLTQFRTWLWVKSALIKGLENDTQIASVCKIG-NLKRMYFLRQEVKSLNLRSLFFALEN 289

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQT 341
           +         KK     +I  T+L I Q+
Sbjct: 290 LMA--LEVALKKGYSTQMILPTLLKITQS 316


>gi|315038081|ref|YP_004031649.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL
           1112]
 gi|312276214|gb|ADQ58854.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL
           1112]
 gi|327183361|gb|AEA31808.1| DNA polymerase III, delta subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 328

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 121/315 (38%), Gaps = 30/315 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN   ++   + +  D  +   L   + K       D F       ++ + + +      
Sbjct: 8   KNTNNNNPHTLIWSEDDFVNDYLAKSYAK------EDQFKDCEHVIIDCETDGLDELIAS 61

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122
           +  +SLFS++K+I+++N         KK    + ++I       ++ + I+I+ S E + 
Sbjct: 62  LTESSLFSEQKLIMVKNPFFLTAKVPKKYQKQINDLIKIFENLSDLEDTIVIVASYEKLD 121

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K   K  +V+   I  Y      +  + +  +     +I++ A Q+L+      
Sbjct: 122 RRKKLTKTVLKQFNVVEPKIRSYE-----VGAITKALIKAEGYTITQSALQLLIERSDQV 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                +  QKL     ++  ITE+ V   +  +    I  I+ + +      A+   +  
Sbjct: 177 MDTVLSNYQKLKMTATDNK-ITEKSVMQNVDLSLAQNIFAILESALNRNYQEAVDRLENQ 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299
           L        LL  F  + +LL  + I+ +    S  +I++     + P + +  L+  ++
Sbjct: 236 LREGTSPIQLLAVFENQLELLLVVKILAQRGR-SEPQIVKDLG--VHPYRVKLALKNRVK 292

Query: 300 IWNKNLVRETLHKID 314
           I     +      ++
Sbjct: 293 ISKLEKLLRDAIDLE 307


>gi|330996946|ref|ZP_08320811.1| DNA polymerase III, delta subunit [Paraprevotella xylaniphila YIT
           11841]
 gi|329572020|gb|EGG53691.1| DNA polymerase III, delta subunit [Paraprevotella xylaniphila YIT
           11841]
          Length = 341

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 98/315 (31%), Gaps = 17/315 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I ++               F+L V    ++  +     N      + +
Sbjct: 24  PVYYLMGEEAYYIDKVSEFIVGTALKEEEKDFNLTVCYGTDVTVDE--VINAAKRFPMMA 81

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           +++++L+   +      + L   +     + ++I   K   + K   L   A+     + 
Sbjct: 82  ERQVVLVRE-AQSLPGKERLSFYLEHPQPSTVLIFCHKHGVLDKRKKL--AADIQKVGVL 138

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLED 198
                     L   +   L     ++ + A  ++  ++G D      EL KL       +
Sbjct: 139 FESKKLYDSQLPGFVTTYLRRKGVTMEQNAVMMVCESVGSDLSRLSGELDKLMLALPAGE 198

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             I    V+  +  +      E+++A +   +     +  +F  +         L     
Sbjct: 199 TRIGAAFVEQHVGISKDFNNFELVSALVAKDVLKVNRIVKYFNDNPKNFSLQLTLSVMFG 258

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            F  L   +   + +  +    I++            +  +++ ++   V + + K+   
Sbjct: 259 FFSNLMVAYYAPQRTEEAIADWIEQPR----WQVARNILPAMQKYSGVKVMQIIGKLRET 314

Query: 317 IHLARKKKYLEKNII 331
              ++    L   I 
Sbjct: 315 DAKSK---GLGNTIA 326


>gi|301633157|gb|ADK86711.1| DNA polymerase III, delta subunit [Mycoplasma pneumoniae FH]
          Length = 261

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 107/268 (39%), Gaps = 17/268 (6%)

Query: 74  INSTSLFS-KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           + + +LF+   K ILI N S  EK  L   E   +K + +  +++    I  ++    + 
Sbjct: 2   VLNQNLFAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVT---IYSDSPANALI 58

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
               ++   +C P     +  +I ++    + +++ +    L   L  +      EL+KL
Sbjct: 59  -NDRAITKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKL 117

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK--MPSHA 249
           +       L  ++ ++ ++CD     I ++ +A ++ +   A+ L +     K   P   
Sbjct: 118 TLLS-PAELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQF 176

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L   FL    LL  +        +   + + + + N+ P +   +Q   R W+ N +   
Sbjct: 177 L--EFLANELLLALM-----VKGVKP-QAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTAL 228

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILY 337
           ++ I       ++   L  +++   +L 
Sbjct: 229 INAIWQLDIKIKRNDGLAIHLLKHFVLR 256


>gi|153941421|ref|YP_001392245.1| DNA polymerase III subunit delta [Clostridium botulinum F str.
           Langeland]
 gi|152937317|gb|ABS42815.1| DNA polymerase III, delta subunit [Clostridium botulinum F str.
           Langeland]
          Length = 343

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 128/315 (40%), Gaps = 18/315 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q + K  ++++  +IF G  + LI E I +             + +  +  ++++  
Sbjct: 6   EFEQNTKK--YINNNCYIFCGHHEQLIKENIKKIIDININNDFKDLNYLQFDGSQLEEF- 62

Query: 68  STFWNEINSTSLFSKKKIILIENLS---------TEKKVLDCLEEIIIKNICNHIIIIKS 118
            T +N   +    S+KK +LI               KK+   +E  I     + I I+  
Sbjct: 63  DTVFNACETLPFMSEKKAVLIYRAGFLDDNKGDNKAKKLYKDIENYIKNIPSHCIFIMYY 122

Query: 119 NEIKKNNTL-RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
               K + +  KI +       I+       +L   +E+      K I+K   +  +  +
Sbjct: 123 IMTNKRDKVSYKIKKLDKKACIITIDKIKGANLEKRVEKFFNDRGKKIAKIPLKAFIQTI 182

Query: 178 GGDRIA-SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
             + ++   NE++KL +Y + +  I ++H+K++        I ++IN   + K   AI +
Sbjct: 183 ENENLSYIENEVEKLCTYAMHE-EIEKKHIKEMYESIKDEDIFDLINFISEKKPRKAIEI 241

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +  +      + +L    ++F+ L  + I  E    + E + ++ +  I P   ++L  
Sbjct: 242 LNELMYKGQKINHILVMIEKQFRNLYFVKIGME-QGKTKEGLAKELK--IHPYGCSVLMS 298

Query: 297 SLRIWNKNLVRETLH 311
             + +    + +++ 
Sbjct: 299 QSKKFTLKQIEKSIE 313


>gi|312140320|ref|YP_004007656.1| DNA polymerase III delta subunit [Rhodococcus equi 103S]
 gi|325677104|ref|ZP_08156773.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi
           ATCC 33707]
 gi|311889659|emb|CBH48976.1| DNA polymerase III delta subunit [Rhodococcus equi 103S]
 gi|325552089|gb|EGD21782.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi
           ATCC 33707]
          Length = 325

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 98/302 (32%), Gaps = 20/302 (6%)

Query: 25  IFYGSDKGLIFELINQ----FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G ++ L+ E          +  + +      +  L A +          E+ S SLF
Sbjct: 12  LVLGDEEFLV-ERAVASVIAAVREAAGSAGQDMPVSRLRAGDASAPE---LAELLSPSLF 67

Query: 81  SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           ++ +++++E  +   K  +  +++         ++++  +   +   +  + +K    + 
Sbjct: 68  AEDRVVVLEAAAEAGKDAVALVQDAAADLPEGVVLVVLHSGGGRAKAMAGVLQKS-GAVV 126

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
             C        +D +          +S E  ++++  +G D         +L +      
Sbjct: 127 HQCAKLKANERVDFVRGEFRTAGVRVSPEVIELVVEAVGSDLRELAAACSQLVADTGGK- 185

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I    V+        +   ++ +  + G    A+    + +   +P   L         
Sbjct: 186 -IDASAVQRYYSGKAEVSGFDVADKAVAGDRRGAMESLRWAMHRGVPHVLLADALA---D 241

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHR 316
            +  I  +         ++  +      P K    Q  +R W+   + E L    +++  
Sbjct: 242 AVHTIARVGSAGRGDPFRMASELGMP--PWKIKKAQAQVRGWDPASIGEALQVVARLNAE 299

Query: 317 IH 318
           + 
Sbjct: 300 VK 301


>gi|260222021|emb|CBA31169.1| hypothetical protein Csp_C27200 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 365

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 103/304 (33%), Gaps = 22/304 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  +G +  L  E ++  + +     +   +   +       + S       S SLF+ 
Sbjct: 19  LYTVHGDEPLLQQEALDAIRAHARTLGYTERTSHTVAGAHF--DWSEVLAAGGSLSLFAD 76

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLRKIAEK-FTSV 137
           K+I+ I   +    K     L+++   +  N   + I+    + K            +  
Sbjct: 77  KQIVEIRIPSGKPGKDGSVALQQLAEGSQGNDSTLTIVLLPRLDKMTKSGAWFSALESYG 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQKLS 192
           + I   P  +  L   I + L    + ++     +   Q     + G+ +A+  E+QKL 
Sbjct: 137 ITIQVDPVERNALPQWIAQRLGAQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQKLG 196

Query: 193 SY----CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
                   +  +++ + V+  + +     + ++  A + G+      + D   A      
Sbjct: 197 LLFPADAHD-GVLSLEQVESAVLNVARYDVFKLSEAVLAGQAGRVQRMLDGLQAEGEAEV 255

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVR 307
            + +   +  + L+++                   +N I   +  + +  L   ++  + 
Sbjct: 256 LVHYTLAEDIRALKRVKDAMGQGRPLPM----ALRENRIWGAKERLFERVLPKLSERTLA 311

Query: 308 ETLH 311
           E L 
Sbjct: 312 ELLQ 315


>gi|157962962|ref|YP_001502996.1| DNA polymerase III subunit delta [Shewanella pealeana ATCC 700345]
 gi|157847962|gb|ABV88461.1| DNA polymerase III, delta subunit [Shewanella pealeana ATCC 700345]
          Length = 343

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 103/304 (33%), Gaps = 12/304 (3%)

Query: 25  IFYGSDKGLIFE-LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           + +G D  L  +       +     + +   L         +     + +  + SLFS +
Sbjct: 20  LIFGDDPWLCEQSRAALHSEAKRQGFEEKIQLSQETGFSWNE----LFEQWQAMSLFSSR 75

Query: 84  KIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAI 140
           +II +              L+ ++  +  + ++I+   ++    T  K  +      + +
Sbjct: 76  RIIELTLPQAKPGTDGSAMLQTLMQMDNPDVLLILTGPKLAAEQTKSKWFKSLDAKGIYV 135

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C           ++  +     S++++ +++L A   G+ +A+   LQ L         
Sbjct: 136 PCATPEGAQFQRWLDGRINYYGLSLARDPREMLFALYEGNLLAADQALQLLQLLS-PTAP 194

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I  + +     D     + ++ +A +  +   A  +     +  +    +L    ++  +
Sbjct: 195 IDCEQLSQYFEDQSRFSVFQLTDAMLNNQQDKAQHILSQLKSEGVAMPIILWSLFKELAV 254

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L ++   ++    S + +  K    I   ++ I Q +L       +   L          
Sbjct: 255 LLQLKTAQD-KRESLQGLWCKLR--IWDKRKPIYQNALNRLELTHIETLLAGASAIELKL 311

Query: 321 RKKK 324
           +++ 
Sbjct: 312 KQQG 315


>gi|300865075|ref|ZP_07109901.1| putative DNA polymerase III, delta subunit [Oscillatoria sp. PCC
           6506]
 gi|300336939|emb|CBN55051.1| putative DNA polymerase III, delta subunit [Oscillatoria sp. PCC
           6506]
          Length = 324

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 124/330 (37%), Gaps = 34/330 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G D   I + ++ FKKN+     DP    F+    +A  + +      +   + +L 
Sbjct: 4   LLIGDDLHAIHKKLSAFKKNL-----DPAWIGFNYHRFDASALNEA----VDCALTPALG 54

Query: 81  SKK-KIILIENLSTEKKVLDCLE--EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           ++K K++++E  + ++   + LE   ++ +      ++  +  I K   + K       +
Sbjct: 55  TEKAKLVVVEGCNFKQFTEEALEVLNLLPQVPEKTHLVFVAPSIDKRLKVAKSLLSQAKL 114

Query: 138 L---AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                I  +  +   +   I    L    S++      L   +G +   + +EL KL++Y
Sbjct: 115 FEFDLIPPWRTDL--IAHSIRNQALAIGLSLNSNLIDYLAVAIGSNPARAESELHKLATY 172

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +T + V+ +I  T    ++ +  A  +     A+ L    LA      A+    
Sbjct: 173 SNG-AHLTLKQVQALIPSTTQNSLQ-LAEAMKENSSKKAVYLLQELLAIGTFPLAICATL 230

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNILQESLRIWNKNLVRETL 310
           + +F+    +            +I +  +    K +  +++ +   S+   +       L
Sbjct: 231 ITQFRTWLWVKAAIVGGVKQDAEIARICQISNPKRVYFLRKEVAGASVT--SLAAAMSLL 288

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             ++  + L RK  ++   I     L IAQ
Sbjct: 289 LDLEASLKLGRKGDFMLPVI-----LAIAQ 313


>gi|189347624|ref|YP_001944153.1| DNA polymerase III, delta subunit [Chlorobium limicola DSM 245]
 gi|189341771|gb|ACD91174.1| DNA polymerase III, delta subunit [Chlorobium limicola DSM 245]
          Length = 348

 Score = 63.8 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 28  GSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLFSKKKII 86
           G +  L  ELI   K  +  +  D  F+  V    ++  N+    ++ +   +F++KK+I
Sbjct: 21  GPEGYLKEELIGLIKGALFPSEADAAFNTTVFYGSDL--NLGELASKASEYPMFTEKKLI 78

Query: 87  LIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKNNTLRKIAE 132
           ++          +   +K   D     I       ++++ +      E+ K +  +++  
Sbjct: 79  VVRQFEKIKRTGSREQQKHYDDKFAAYIAHPADFTVLVLDTDTADKKELDK-SPFKELKH 137

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
                 AI        +      E           +A ++L A +        +E+ K+ 
Sbjct: 138 LKIDFPAI-------RNPDLFATEQAKAAGWEFEPDALKLLTAYIQPSAREIAHEIDKII 190

Query: 193 SYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            Y     +   IT   + D +  +    + E+  A  +G + 
Sbjct: 191 LYASSKHQGNSITAADIYDCVGISKTYNVFELEKALAEGNLR 232


>gi|300871294|ref|YP_003786167.1| DNA polymerase III subunit delta [Brachyspira pilosicoli 95/1000]
 gi|300688995|gb|ADK31666.1| DNA polymerase III delta subunit [Brachyspira pilosicoli 95/1000]
          Length = 339

 Score = 63.8 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 34/262 (12%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN------- 72
            + +++  G ++         FKK    + H   SL+  +  + + N S F++       
Sbjct: 26  KYSIYVLTGKER--------LFKKAFITSMH---SLIFKDEGDSEMNYSLFYDKNDAVGY 74

Query: 73  ---EINSTSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
              E+  T  F    ++++I   +      +   E  I    + III+++    + + + 
Sbjct: 75  SPLEVADTPPFGSNIRLVVIYKYN---NFQEDFLEYCINPSKSSIIILETENSLEEDGIY 131

Query: 129 KIAEKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           K   K  +V  I  + D    ++     LI   +    K IS +A   ++ N+  D  + 
Sbjct: 132 KYFSKKDNVDYIH-FIDFPIPDERDFRSLITAYINKNNKKISNDAVDYIVNNINLDYDSL 190

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            +EL K+ SY  +   +  + + D    +    I + +++  +        +        
Sbjct: 191 YSELDKICSY-NDKEYLNVEDIMDFTYVSKNRNIFDFLDSVFERDRKKCFSIMHRLDQDA 249

Query: 245 MPSHALLHGFLQKFQLLEKIHI 266
             S  L+   +  F  L  + I
Sbjct: 250 SSSLTLM---MNNFLALYYMKI 268


>gi|194334764|ref|YP_002016624.1| DNA polymerase III subunit delta [Prosthecochloris aestuarii DSM
           271]
 gi|194312582|gb|ACF46977.1| DNA polymerase III, delta subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 349

 Score = 63.8 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 102/323 (31%), Gaps = 45/323 (13%)

Query: 22  FVFIFYGSDKGLIFELINQFK-KNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            ++  YG +  L  EL    K +  S       +  V    ++   +    +  +   +F
Sbjct: 15  PLYFLYGPESYLKEELTELIKTRAFSSEEEATLNTSVFYGQDVT--LGDLVSRASEFPMF 72

Query: 81  SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------- 124
           +++K+I++++         ++ +K+ ++             I+++ +++I K        
Sbjct: 73  TERKLIVVKHFEKYRKAGSVAQQKQHVEQFRRYCKNPADTTILVLDADQIDKKDLQKAPF 132

Query: 125 ---NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                LR    +       +              E           +A +   A +    
Sbjct: 133 SELAPLRHDFAQIKHADVFA-------------TERAATYGWEFEPDAIKAFSAYIEPSS 179

Query: 182 IASRNELQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
                E++KL  Y     +   IT   V + +  +    + E+  A     +     ++ 
Sbjct: 180 REICREVEKLVMYASSKRKTSRITSDDVYECVGISKQYNVFELEKALASKNLRLCSGISL 239

Query: 239 FFLASKMP---SHALLHGFLQKFQLLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNI 293
             +  +        +L      +  + K+    I++       KI+    +      +N 
Sbjct: 240 MIMEQEGQKEGIMNILRYLSVFYSRIWKMQAPGIRQQPLSETAKILGMFGRQEFFA-KNY 298

Query: 294 LQESLRIWNKNLVRETLHKIDHR 316
           L  + R  +   + + +  + H 
Sbjct: 299 LDYATRF-SLQEIEKAILALQHT 320


>gi|260591478|ref|ZP_05856936.1| DNA polymerase III, delta subunit [Prevotella veroralis F0319]
 gi|260536509|gb|EEX19126.1| DNA polymerase III, delta subunit [Prevotella veroralis F0319]
          Length = 341

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 97/264 (36%), Gaps = 9/264 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G +   I  + +    ++       F+  +    ++        +      + +
Sbjct: 23  PFYLLMGDESYYIDSISDYIASHVLSPEECDFNQTICFGSDVTA--VQVADMARRYPMMA 80

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           + ++I+++     + + + LE+ +   + + I++      K +   + +    +  +   
Sbjct: 81  EYQVIIVKEAQNIRSL-EALEKYLKNPVKSTILVWCHKNGKIDARKKVLGLAQSVGVVFE 139

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDIL 200
                   L D I+  L   + SI  ++ Q++   +G D     +EL K+  Y   +D  
Sbjct: 140 SKKLRDYQLPDFIQNYLKPKKISIDPKSCQMIADYIGADLSRIVSELDKILIYLPEDDRR 199

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA--LLHGFLQKF 258
           IT + V+  +  +      E+ NA +   ++ A  +  +F  +         L      F
Sbjct: 200 ITPEVVEKEVGVSKDFNAFELRNAIVSKDVFKANQIIKYFDNNPKAGSLYSFLPLLFSFF 259

Query: 259 QLLEKIHIIKECSNISFEKIIQKT 282
           Q L  +H      N S E+ I + 
Sbjct: 260 QNLMIVHY---TPNKSSEQDIARA 280


>gi|303232309|ref|ZP_07319005.1| DNA polymerase III, delta subunit [Atopobium vaginae PB189-T1-4]
 gi|302481595|gb|EFL44659.1| DNA polymerase III, delta subunit [Atopobium vaginae PB189-T1-4]
          Length = 315

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 24/278 (8%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           ++++  +L     V++  GSD   I +      +   +  +  F+    +A ++  +IS 
Sbjct: 1   MEQARAHLANLMNVYLAVGSDDVKI-KRAAARLRTYLLDAYVFFNYNEYDAQQL-SDISE 58

Query: 70  FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
             +   +  +    +I+++ N+ +  + +L  L   +     + ++ + + ++ KN  L 
Sbjct: 59  VLSCCMAMPMGDDVRIVVLFNVDALARDMLSQLVSYVQNPNTHCVLFLSATKLAKNTALY 118

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K          I C    K  +   +E             A   L+  +G        ++
Sbjct: 119 KAVAHVGQKAIIPCAAAQKEEVPVFVERVARSKNLQFDANAIAELIGRVGAQPRMLTCQI 178

Query: 189 QKLS--SYCLEDI------------------LITEQHVKDIICDTHVLYIEEIINATIQG 228
             ++   Y  +                     +T + V  ++  T  +   + ++A    
Sbjct: 179 DMIAAHMYAQQASRSTVSTTAAAGAGAPALLRVTREDVCALVDSTAEVTPWKFLDALSAR 238

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
               A++     L S      L    +Q+ + L     
Sbjct: 239 NEAQALVAYAQ-LKSTSSPIQLTRLMVQRIRALMCARA 275


>gi|307610050|emb|CBW99585.1| hypothetical protein LPW_13551 [Legionella pneumophila 130b]
          Length = 341

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 111/290 (38%), Gaps = 10/290 (3%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H + +  G D  LI E +N+ K  +  +      ++ + + E          E N+ SLF
Sbjct: 17  HHLNVLIGQDHYLIDEALNKIKSMLKKSSECDEKILSIQSPE---EWHVVLEETNNYSLF 73

Query: 81  SKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
            +  I  I  +  + +      L E +     +  III++  +     L+ +     +++
Sbjct: 74  YQTVILTIFFDKKTIDTMGKKILGEYLKSANSHSYIIIRAPNLTAK-QLQWLTHDEQALI 132

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+  P +   +   I E L +   S      +++     G+ +A+   ++K++      
Sbjct: 133 IIA-QPLSSEAMKRWINEQLKLNTISFDPYVPELIYQYTKGNMLATAQVIEKINLSNTPS 191

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LIT     + + D     + E+I++ + G    AI +      +K     +L       
Sbjct: 192 TLITPYLALEHLSDQCDFSLFELIDSCLLGHSDRAIHILRQAANNKTEVTLVLWMLT--- 248

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           Q +  +  +        +  +   +  I   + N+ Q +++  N  L+++
Sbjct: 249 QEIRTLLQLLFLMQQKMDIKMASNQLKIWTQRVNLYQSAVKRLNTLLLQQ 298


>gi|313205637|ref|YP_004044814.1| DNA polymerase iii, delta subunit [Riemerella anatipestifer DSM
           15868]
 gi|312444953|gb|ADQ81308.1| DNA polymerase III, delta subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022632|gb|EFT35657.1| DNA polymerase III, delta subunit [Riemerella anatipestifer RA-YM]
 gi|325334935|gb|ADZ11209.1| DNA polymerase III, delta subunit [Riemerella anatipestifer RA-GD]
          Length = 345

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 18/308 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++ F+G +   I   I  F+  +       F+  V+   +     S          +  
Sbjct: 18  PIYFFHGEEPYYIDVAIKHFENEVLTEDEKAFNQTVVYGKDTTY--SEVLALARQFPMMG 75

Query: 82  KKKIILIENLSTEK---KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FTS 136
            +++I+++     +   K  + LE  +   + + I++I     K ++  RK   K    +
Sbjct: 76  DRQLIVLKEAQDIRLTEKETEALEAYVNNPVPSTILVIAHKHKKVDS--RKKFAKTLAKN 133

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +     P    +L   I++ +             IL   LG D     NE+ KL     
Sbjct: 134 KMLFLSEPVKDWNLPQFIQDEISRAGLKAEPNIPTILAEYLGNDLSRIANEINKLKLILK 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHA-LLHGF 254
           E  ++    V+  I  +    + E+  A        A+ +A +   + K      +L   
Sbjct: 194 EGEVLNSLLVEKHIGISKDYNVFELQKALGTKNEEQAMKIAYYIGKNPKSNPFVMMLGSL 253

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              F  L   H +     +S + I  +              + S R++        +  +
Sbjct: 254 YNYFSNLIVFHSL---KGMSPQSIAAEMGVNPYFIKD---YETSARLYPLKHATRIISIL 307

Query: 314 DHRIHLAR 321
                 ++
Sbjct: 308 REFDMKSK 315


>gi|307566337|ref|ZP_07628776.1| DNA polymerase III, delta subunit [Prevotella amnii CRIS 21A-A]
 gi|307344914|gb|EFN90312.1| DNA polymerase III, delta subunit [Prevotella amnii CRIS 21A-A]
          Length = 342

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 107/275 (38%), Gaps = 14/275 (5%)

Query: 1   MATIESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL 58
           M T   H F Q    +L    F   ++  G +   I ++ +    N+       F+  + 
Sbjct: 1   MPTKLDHTF-QSIISDLKAKRFAPFYLLMGEESYFIDKITDFIANNVLEKDMRDFNQTIC 59

Query: 59  NALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII-- 116
              ++    +   +      + +  ++++++     + + D LE+ +  NI    I++  
Sbjct: 60  FGSDVSS--TQVIDIAKRYPVMADTQVVIVKEAQNIRSL-DALEKYLSGNILKSTILVWC 116

Query: 117 -KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
            K+  I     + K+A   +  +           L   I+E L     +I  +AKQI+  
Sbjct: 117 YKNGVIDNRKKIVKLA--NSVGVVFESVKLRDYQLPTFIQEYLNKKNVAIDPKAKQIIAD 174

Query: 176 NLGGDRIASRNELQK-LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
            +G D     +EL K + S   +++LIT + V+  I  +      E+ NA IQ  I+ A 
Sbjct: 175 AVGSDLNRLTSELDKVIISLNKDNLLITPEIVEREIGISKDFNSFELRNAIIQKNIFKAN 234

Query: 235 MLADFFLASKMPSHA--LLHGFLQKFQLLEKIHII 267
            +  +F  +        +L      F+ L   H +
Sbjct: 235 QIIKYFSNNPKAGSLYSVLPILFSYFRNLMITHYL 269


>gi|154486270|ref|ZP_02027677.1| hypothetical protein BIFADO_00074 [Bifidobacterium adolescentis
           L2-32]
 gi|154084133|gb|EDN83178.1| hypothetical protein BIFADO_00074 [Bifidobacterium adolescentis
           L2-32]
          Length = 339

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 114/348 (32%), Gaps = 33/348 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +    K    +    + YG D  L  + +   K      Y D    + L+A         
Sbjct: 11  LNGMPKPSAATTPFHLVYGGDSYLNDQTVRDLKHEAQRRYPD-AETIELDAANADHYA-- 67

Query: 70  FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII---KSNEIK 122
            ++E  S SL + + I+++ NL   ++K+ D +        K   +  I+I   +     
Sbjct: 68  -FDEAVSPSLLADRAIVIVTNLQNADEKLGDAMVSYCRQACKEPADACIVICQHEGGVKG 126

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLAN 176
           K      + E+ T   A   Y D    L         + +     ++ +   A Q L+A 
Sbjct: 127 KR-----LVEQLTKAGA---YKDAVADLKKPEAKLNFVMQCFERRKRRVEPMAAQQLVAV 178

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           LG         + +L  +  +D  +T   V   +     +    + +  + G+  +AI+ 
Sbjct: 179 LGDRTGELAAMVGQLC-FDFDDNPMTLDRVNQYLTSNPQVDGFRVADLALSGRTADAIIA 237

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               +       AL+           K+  + + S +    I     K    + +N    
Sbjct: 238 MRSSVEQGTAPIALIGALA------MKLRTMAKASAVRAGTISTAEAKTNPWVLKNA-TR 290

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
            L  W  + +   +  +      ++         + ++I  I++    
Sbjct: 291 QLSGWTSSGMSACIQMLAWADEQSKTNGSDPVYALERSIELISRKGRA 338


>gi|145219140|ref|YP_001129849.1| DNA polymerase III, delta subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205304|gb|ABP36347.1| DNA polymerase III, delta subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 346

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 26/227 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80
            V+ F+G +  L  E     +     +  +   +  V+   +I           +   +F
Sbjct: 15  PVYFFHGPESYLKEEFTALIRTAAFPSEEEAACNTHVIYGPDIT--PGDLVARASEYPMF 72

Query: 81  SKKKIILIEN-----LSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           S K++I++           K +       L   +       I+++ +++++K     K A
Sbjct: 73  SPKQLIIVRQFEKIKKPPSKDLQKQHDLKLAGYMNSPAEFTILVLDADQLEK-----KDA 127

Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           EK           D        L     +           +A +   A +         E
Sbjct: 128 EKKPFSTLKPFRHDFPLIKTPDLFA--TQRAREAGWEFEPDALKAFTAYIQPSSREICQE 185

Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           ++K+ +Y      +  IT   V + +  +    + E+  A     + 
Sbjct: 186 IEKMITYASSRSGEKNITAADVYECVGISKTYNVFELEKAVAARNLR 232


>gi|238758031|ref|ZP_04619212.1| DNA polymerase III subunit delta [Yersinia aldovae ATCC 35236]
 gi|238703785|gb|EEP96321.1| DNA polymerase III subunit delta [Yersinia aldovae ATCC 35236]
          Length = 315

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 8/205 (3%)

Query: 48  TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE--NLSTEKKVLDCLEEII 105
            + + FS   L+A     NI +      + SLF+ ++ +L+          + + L ++ 
Sbjct: 18  DFSEHFSFT-LDAHTEWDNIFSL---CQALSLFASRQTLLLNFPESGLTAPMNEQLVKLS 73

Query: 106 IKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
                + ++I+++N++ K        +    + + +SC    +  L   +     +    
Sbjct: 74  SLLHPDILLILRANKLTKAQENSAWFKALSKNGVLVSCQTPEQTQLPRWVSARTKLLNLE 133

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +   A Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A
Sbjct: 134 VDDAATQLLCYCYEGNLLALSQALERLSL-LYPDGKLTLPRVEQAVNDAAHFTPYHWLDA 192

Query: 225 TIQGKIYNAIMLADFFLASKMPSHA 249
            + GK   A  +       +     
Sbjct: 193 LLAGKSKRAWHILQQLQLEESEPVI 217


>gi|226360420|ref|YP_002778198.1| hypothetical protein ROP_10060 [Rhodococcus opacus B4]
 gi|226238905|dbj|BAH49253.1| putative DNA polymerase III delta subunit [Rhodococcus opacus B4]
          Length = 325

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 91/295 (30%), Gaps = 14/295 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSLFSK 82
           +  G ++ L+   + Q    +  + +   +   L    ++   +      E+ S SLF++
Sbjct: 12  LVLGDEEFLVERAVAQVVGQVRASAN-VAAGAELPVNRLRAGDAGAAELAELLSPSLFAE 70

Query: 83  KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +++++E  +   K  +  + +         ++++  +   +   +    EK    +   
Sbjct: 71  DRVVVLEAAAEAGKDAVALVLDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKL-GAVVHP 129

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           C       L+  I          +S +  Q +   +G +         +L++       I
Sbjct: 130 CAKLKSGELIGFIRGEFRTLGVRVSPDVVQSVFEGVGSNLRELAAACSQLTADTGGK--I 187

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+        +   ++ +  + G    AI    + +   +P   L          +
Sbjct: 188 DVAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALA---DAV 244

Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
             I  +         ++  +         K   L +    W    V E L  +  
Sbjct: 245 HSIARVAPAGRGDPFRMASELGMPPWKIKKAQALAKG---WTPTSVGEALRIVAA 296


>gi|218848126|ref|YP_002454709.1| DNA polymerase III, delta subunit [Bacillus cereus G9842]
 gi|218546257|gb|ACK98650.1| DNA polymerase III, delta subunit [Bacillus cereus G9842]
          Length = 323

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 115/306 (37%), Gaps = 23/306 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F+ YG ++  I + + +       + +  FS+ + +  E    ++    +    SL   
Sbjct: 3   LFVIYGLEQYTIDKELTKIINKDLESDNIDFSVNIYDCDETTVQVAI--EDAEMFSLMMG 60

Query: 83  KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKIA- 131
            K ++++N    + +K   D      L++ I     +  +I+     ++ +   + K+  
Sbjct: 61  PKKVVVKNALFLTGQKMKKDEHDMDILQKYIESPNEDTDLILVVPYEKLDQRKKIVKLLK 120

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           EK   + A        I     I+E        +S EA + L   +G +     +ELQK+
Sbjct: 121 EKAIIIEAAVL---KSIEAKRWIKEESQNLNIELSSEAIEHLYMMVGSNLQMLSSELQKI 177

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           + Y  E   +  + +  ++  T    +  II    +     A       +  K+ + A+ 
Sbjct: 178 AMYVGEKRKVGTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIAIA 237

Query: 252 HGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
               ++F  +   K H+           ++      + P    ++    R +++  +++ 
Sbjct: 238 AMISKQFSRMLEVKAHLHDGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQQI 292

Query: 310 LHKIDH 315
           LH++  
Sbjct: 293 LHRMSQ 298


>gi|228969939|ref|ZP_04130659.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228789761|gb|EEM37623.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 176

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 70/174 (40%), Gaps = 4/174 (2%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
             I   A  +LL  +G +      E+ KL+ Y      IT + V +++  +    +  + 
Sbjct: 1   MHIDNAAVSLLLELVGSNVTMLAKEMDKLTLYVGMGGEITTKLVAELVPKSVEQNVFALT 60

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
              ++  I  A+ + D     +     LL   + +F+LL +   +KE     + +    +
Sbjct: 61  EKVVKKDIAGAMQILDGLFTQQEEPIKLLALLVSQFRLLYQ---VKELQQRGYGQNQIAS 117

Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
              + P +  +     + ++   +++ + ++    + + K   ++K ++ +  L
Sbjct: 118 HIGVHPYRVKLAMNQTKFFSFEELKKVIIELAEADY-SMKTGKMDKKLVLEFFL 170


>gi|145595979|ref|YP_001160276.1| DNA polymerase III, delta subunit [Salinispora tropica CNB-440]
 gi|145305316|gb|ABP55898.1| DNA polymerase III, delta subunit [Salinispora tropica CNB-440]
          Length = 326

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 73/242 (30%), Gaps = 12/242 (4%)

Query: 73  EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           E+ S SLF  ++++++ +     K +   L         +  +++      K        
Sbjct: 58  EMLSPSLFGGRRLLILRSGQDARKDLAAALLGYAKSPDPDVQLVVLHLGAAKGKAFADGL 117

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +   + +  +         +  + +         +  A + L+A +G D      EL   
Sbjct: 118 KAAGATVVPAARLKGHRDRVAFVRDEFRRAGGRCTDSAAEALIAAVGNDLR----ELAAA 173

Query: 192 S--SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
                   D  I+ + V         +    + +AT+ G +  A+    + L   +    
Sbjct: 174 CSQLMADTDGKISPETVARYYRGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVP 233

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +          +  +  +      S  ++          ++R   Q   R W    + + 
Sbjct: 234 IADALA---DGVRTVARVASAGRGSPYQLASTLGMPAWKIERA--QRQSRGWTPEGLVQA 288

Query: 310 LH 311
           + 
Sbjct: 289 MR 290


>gi|297559663|ref|YP_003678637.1| DNA polymerase III subunit delta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844111|gb|ADH66131.1| DNA polymerase III, delta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 320

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 92/271 (33%), Gaps = 11/271 (4%)

Query: 73  EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKI 130
           E+ S SLF  ++++++ +     K +   + + +     +  +++  +   K    L+  
Sbjct: 53  EVTSPSLFGDRRVVVLRSSQDLTKDLAATVTDYLGDPADDVNLVLTHAGGNKGKALLQAA 112

Query: 131 AEKFTSVLAISCY-PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            +       + C  P      +  ++       + I+ +A Q L+  +G +         
Sbjct: 113 VKAGAH--RVDCKGPSKPAERVAFVKGEFSQAGRQITADAAQALVDAVGSELREIAAACT 170

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +L      +  +    V              + +  ++G++  A+    + LA       
Sbjct: 171 QLI--ADTEGRVDAAAVARYHSGRAEASGFTVADRAVEGRLPEALEQLRWSLAVGTAPVL 228

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +        + +      +    +S   + ++ +    P K   L++  R W+   V   
Sbjct: 229 INSALAGAVRGIAV--AAQPPRGMSEADLAKRAKVP--PWKLRTLRQQARGWSPAGVTRA 284

Query: 310 LHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
           +  +     L +      +  + + ++ IA+
Sbjct: 285 MAVVAETDALIKGAGRDPEYALERAVIEIAR 315


>gi|212550608|ref|YP_002308925.1| DNA polymerase III delta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548846|dbj|BAG83514.1| putative DNA polymerase III delta subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 338

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 97/264 (36%), Gaps = 10/264 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++F G +      L N   +++        +  ++   E   N+ +  N      + +
Sbjct: 21  PIYLFQGEESYYTDLLTNLLIQSVLDEVEKDLNQTIVYGSET--NVPSIINICRKYPMMA 78

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS--NEIKKNNTLRKIAEKFTSVLA 139
           K+++I+I+     K + D L   + + + + I++I     +++    L  + E     + 
Sbjct: 79  KRQLIVIKEAQALKNIND-LIHYVKQPLSSTILVINYKYGKLEGRKKL--VDEIAKVGII 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-ED 198
                     + D I + L   Q  I+ +  +I+  +LG D      EL KLS     + 
Sbjct: 136 FESKKIINSKIPDFIIDYLKGKQIEINFQIAKIITDHLGNDLSKIVKELDKLSIVIPIDQ 195

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
             IT   ++  I  +      E+ NA     I     +A +F  +    P    L+    
Sbjct: 196 KRITADLIEKNIGISKDFNNFELQNAVAVRDILKVNRIAFYFEQNPRNNPLILTLNVLFG 255

Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280
            F  L      K+ S     +++ 
Sbjct: 256 FFVNLMICQYEKDQSQKHLMQVLG 279


>gi|296127026|ref|YP_003634278.1| DNA polymerase III, delta subunit [Brachyspira murdochii DSM 12563]
 gi|296018842|gb|ADG72079.1| DNA polymerase III, delta subunit [Brachyspira murdochii DSM 12563]
          Length = 341

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 82/239 (34%), Gaps = 15/239 (6%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL---EIQKNISTFWNEINS 76
            + +++  G ++            ++     D      +N     +    +     E+  
Sbjct: 28  KYCIYVLTGKERLFKKAFAAALHSSMFPDEGD----SEMNYSVFYDKNDAVGFAPLEVAD 83

Query: 77  TSLFSKK-KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-- 133
           T  F  K ++I+I   +      +   E  +      ++++++    + + + K   K  
Sbjct: 84  TPPFGSKLRLIIIYKYN---NFQEDFLEYCLNPSKTAVVVLETESSLEEDPIYKYFSKKQ 140

Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              ++  I     ++     LI   +    K IS +A + L+ N+  D  +  +EL K+ 
Sbjct: 141 GSHNINFIDFPLPDEKDFRGLINAYINKQGKKISSDAVEYLINNINLDYDSLYSELAKIC 200

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           SY  +   +  + + D    +    I + ++A  +        +          S  L+
Sbjct: 201 SY-NDKEYLNVEDIMDFTYVSKNRNIFDFLDAVFERNRRKTFSIMHRLDQEASSSLTLM 258


>gi|158521201|ref|YP_001529071.1| DNA polymerase III delta [Desulfococcus oleovorans Hxd3]
 gi|158510027|gb|ABW66994.1| DNA polymerase III delta [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 24/254 (9%)

Query: 31  KGLIFELINQFKKNISITYHDPFSLVV-LNALEIQKN--ISTFWNEINSTSLFSKKKIIL 87
            G +  +             D  +L   L+   + K     T  +      L        
Sbjct: 117 AGFVKLIGLLDIALTGDKDLDKKALARALDDDTVVKAEWPDTLIDACAGRDL-------- 168

Query: 88  IENLSTEKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKFT-----SVLAIS 141
             + ST     + L   I K    N+ ++I ++ + K   L K  ++       SV   +
Sbjct: 169 --SASTGIDAAEALVAAIEKGFAPNNHLVITTDMVDKRRKLYKAIKEHGVVVDCSVAKGA 226

Query: 142 CYPD---NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
              D       L +++ ++L    K++   A  +L    G D       L+KL +Y  + 
Sbjct: 227 SAADKKAQAATLQEVMRDTLKNQNKTMDGAAFTLLCETTGFDLRTFAGGLEKLCTYVGDR 286

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP--SHALLHGFLQ 256
             IT + VK ++  T V  + E+ NA  +     A+   +  L    P     +L     
Sbjct: 287 KAITAKDVKAVMVRTRVDPVFELTNAVGEKNTDQALFYLNSLLNGPEPLYPLQILAAIAN 346

Query: 257 KFQLLEKIHIIKEC 270
           + + L  I    E 
Sbjct: 347 QTRKLAVIRDFMES 360


>gi|301630144|ref|XP_002944187.1| PREDICTED: DNA polymerase III subunit delta-like [Xenopus
           (Silurana) tropicalis]
          Length = 505

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 95/301 (31%), Gaps = 16/301 (5%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           H ++  +G +  L  E ++  +       +   S   +       + S      +S SLF
Sbjct: 173 HPLYTLHGDEALLQQEALDAIRAAARAQGYTERSSHTVAGAHF--DWSAVLAASSSLSLF 230

Query: 81  SKKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FT 135
           + K+I+ +   S     +            +   + + ++    + K             
Sbjct: 231 ADKQIVELRLPSGKPNKDGAAALQQLAQAAQGNDSTLTLVILPRLDKATKTSPWFSALDA 290

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSIS-----KEAKQILLANLGGDRIASRNELQK 190
             L++   P  +  L   I + L    + ++     +   Q     + G+ +A+  E+QK
Sbjct: 291 QGLSVQIDPVERGMLPAWIAQRLATQGQRVAAGEEGQRTLQFFADRVEGNLLAAHQEIQK 350

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+        ++ Q V+  + +     + ++  A + G+      + D   A       +
Sbjct: 351 LAL-LYPQGALSWQQVEAAVLNVARYDVFKLSEAALAGQSARVQRMLDGLQAEGTNEVLV 409

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                +  + L+++             + +     +   K ++ +  L           L
Sbjct: 410 HWVLAEDIRALKRVKDAMNTGKPLPMALRENR---VWGAKEHLFERVLPRLPDAAAARLL 466

Query: 311 H 311
            
Sbjct: 467 Q 467


>gi|319937619|ref|ZP_08012023.1| hypothetical protein HMPREF9488_02859 [Coprobacillus sp. 29_1]
 gi|319807261|gb|EFW03873.1| hypothetical protein HMPREF9488_02859 [Coprobacillus sp. 29_1]
          Length = 320

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +K L+ + +   KK   I   D   + V+     + +IS    +  +    ++ K
Sbjct: 4   VIYGEEKMLMEQKLAALKKQYRIHEED---MNVITYWCHETSISEMIEDALTPPFLTEYK 60

Query: 85  IILIEN---LSTEKKV------LDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133
           +I+++N   L+T+K+       +  L + + K     I +I        +   + K   K
Sbjct: 61  MIIMKNPLFLTTQKQKDVNEEDIQMLMDYLSKENPTTIFVIYHDQKNFDERKKIVKKLRK 120

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               + +     +   L     +++      I  +A ++LL+ +  D +    E+ KL  
Sbjct: 121 DLRFIEVG--KLDHHQLFKTTHQAIKKRGCEIDDDALELLLSRMPNDLLEISQEVNKLCL 178

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Y      IT + +  ++       + E+  A +  +   +I +    + +      L+  
Sbjct: 179 YS---QHITRETIDIMVAKQVEENVFELTKAILNKETGKSIQIYKDLMMNNEEPIKLIVL 235

Query: 254 FLQKFQLLEKIHII 267
                +LL ++ ++
Sbjct: 236 IANSLRLLYQVKLL 249


>gi|312144021|ref|YP_003995467.1| DNA polymerase III, delta subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904672|gb|ADQ15113.1| DNA polymerase III, delta subunit [Halanaerobium sp. 'sapolanicus']
          Length = 335

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 111/322 (34%), Gaps = 26/322 (8%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           ++   +N      ++  Y +D  L  E  ++F           F+L ++   E       
Sbjct: 3   VKDFIENENKLKNLYYIYSADNYLRDEFKDKFIDKFVEENIRDFNLSIVQPGE--DYFKK 60

Query: 70  FWNEINSTSLFSKKKIILIE---NLSTEKKVLDCLEEIIIK-NICNHIIIIKSNEIKKNN 125
             N + +  L SKK+ ++ +     S +KK    L  II   +    ++ + SN + K  
Sbjct: 61  LSNAVQTPPLGSKKRFVISQLEAEDSFDKKAQQKLISIIENLDKTTCLLFLSSNSLDKRK 120

Query: 126 TLRKIAEKFTSVLAI--SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
            L    +K  S        Y     +L   I        K I K + ++L          
Sbjct: 121 KLYLTIKKKGSYFEFKAPKY----GNLDKWIVRRFREHNKKIDKRSIKVLENMFSNKLEI 176

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDT---HVLYIEEIINATIQGKIYNAIMLADFF 240
              E++K+ +   +   I+   +KD+I          I   ++   + K   A++     
Sbjct: 177 LATEIEKIITRFPDKEKISYYDIKDLISRERFIEDEEIFAFLDLIGEKKTDKALISLKEM 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHI--IKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
           L   +    LL     + +LL ++        +N    K I K    +    +  LQ   
Sbjct: 237 LNKGVYPLYLLTMLANQIELLMQVKYYSQFTKNNKEIAKKINKHPYPV----KKALQR-- 290

Query: 299 RIWNKNLVRETLHKIDHRIHLA 320
              ++N  +  L +I   I  A
Sbjct: 291 ---SRNFTQLELERILEEILTA 309


>gi|152967366|ref|YP_001363150.1| DNA polymerase III, delta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151361883|gb|ABS04886.1| DNA polymerase III, delta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 343

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 13/309 (4%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI 74
            +      V +  GS++ L  +                F    ++A   QK     W   
Sbjct: 22  PHDLAPAPVVLLAGSEEHL-ADRALSALTTRMRELDPTFERTDVSAAGYQKGQLATW--- 77

Query: 75  NSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
            S SLF ++ ++L++ +       ++ + + +       +++++     K   +  +A  
Sbjct: 78  TSPSLFDERSLVLVDGVDVASDAFVEDVLDYLTAPAETVVLVLRHRGGNKAKKVLDVARG 137

Query: 134 FTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              V  +SC P       +DL+   +   ++ I  +A + L+A LG D       + +L 
Sbjct: 138 VPGVAEVSCQPLKRDQEKVDLVLADVRRARRRIDLDAARALVAALGSDLGELVAAVDQLL 197

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                D  ITE  V             E+ +A ++G+   A++L     A+ +P   ++ 
Sbjct: 198 --TDTDGTITEDAVHRYHGGRREATGFEVADAAVEGRTGQALVLVRHAAATGVPPVLVVA 255

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               + + L ++       +    + +      I   +R++L       +   + E +  
Sbjct: 256 ALAARLRQLARVAAAGRGRSADVARDLGMAPWLIDRARRDLL-----HLSPEGLGEAILA 310

Query: 313 IDHRIHLAR 321
           +    H  +
Sbjct: 311 VAAADHAVK 319


>gi|320546391|ref|ZP_08040706.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           equinus ATCC 9812]
 gi|320448776|gb|EFW89504.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           equinus ATCC 9812]
          Length = 368

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 110/338 (32%), Gaps = 27/338 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +  + +     D     F +  ++  + + +       + S  
Sbjct: 41  ITVVTGEDLGQFSQLKERMVERVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 93

Query: 79  LFSKKKIILIENL----STEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL    + +K  LD       E  +   +    +II +  ++     L 
Sbjct: 94  FFADQKVVIFDNLLDITTAKKSYLDEKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 153

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L    ++       +      + LL     D       +
Sbjct: 154 KILKRDAKI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 211

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS- 247
             L SY  +D  IT + +   I  T    I ++    + GKI  A  L            
Sbjct: 212 TFLKSYK-KDGHITGEDINQAIPKTLQDNIFDLTQFVLSGKIDEARELIRDLRLQGEDEI 270

Query: 248 --HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
              A++ G  + F  +  +    +        +     + + P +        R  +   
Sbjct: 271 KLIAIMLGQFRTFLQVSILASQGKTEQQMVVSLSDYLGRRVNPYQVKFAVRDSRTLSMTF 330

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           +++ +  +    +  +   Y +  +    IL IA    
Sbjct: 331 LKKAIAILIETDYAIKTGTYDKDYLFDVAILKIAHEHR 368


>gi|110598255|ref|ZP_01386531.1| DNA polymerase III, delta subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340170|gb|EAT58669.1| DNA polymerase III, delta subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 346

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 24/226 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLF 80
            V+  YG +  L  E+    K  +  +  D  +   +L   ++        ++ +   +F
Sbjct: 15  PVYFLYGPESYLKEEVAEMIKTALFPSEIDAAANTHILYGPDLT--PGELVSKASEYPMF 72

Query: 81  SKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           ++K++I++              +K+  +     +       +++I +++I+K     K  
Sbjct: 73  TQKQLIIVRQFEKIKKPPTKELQKQHEEKFSRYMQNPADFTVLVIDADQIEK-----KEQ 127

Query: 132 EKFTSVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           EK      +  Y        +      +           +A +   A +        +E+
Sbjct: 128 EKPPFS-TLKMYRKEFPVIKNPDLFASDRAKSSGWEFEPDALKAFTAYIQPSAREICHEI 186

Query: 189 QKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            K+  Y        LIT   V D +  +    + E+  A     + 
Sbjct: 187 DKIIMYASARTGLKLITAADVLDCVGISRTYNVFELEKALAARNLR 232


>gi|303228965|ref|ZP_07315775.1| putative DNA polymerase III, delta subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516379|gb|EFL58311.1| putative DNA polymerase III, delta subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 326

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 113/329 (34%), Gaps = 53/329 (16%)

Query: 21  HFVFIFYGSDKGLIFELINQF---KKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINS 76
           H V++ YG++  LI E   +F    KN+ +   HD            +   S    ++  
Sbjct: 2   HQVYLIYGNEPQLIEEEKQKFFLSHKNLDVRVLHD------------EAGPSKISEQLME 49

Query: 77  TSLFSKKKIILIENLSTEKKVL-------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            SLF   K+  + NL   KK         D L E+++    ++ ++I  +++  +  L++
Sbjct: 50  DSLFGDAKVFCLINLPILKKAGQKESQEWDALAELLMNYTGDNPVLIIYHDM-VDKRLKQ 108

Query: 130 IAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIAS 184
                  + +I    C       L+  I +       +++ +    L   L    D   +
Sbjct: 109 ---NKKILESIPNKECKRLEGDDLLMWIRQYCTSNGYTLTPDGHDYLSHLLELWQDVPVA 165

Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
             R E  +          I    + +   +     I     A ++  +   + L  F  +
Sbjct: 166 FMRTEFDRYFLLLGNHKKIDRSFLMEHSSNYGAKNIFTFKEALLKQDVNTLLELFPFMFS 225

Query: 243 SKM--PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRN 292
            K    +   + G L+    L+ +      + ++ +++           +   I    + 
Sbjct: 226 YKEIDRAMGYIEGQLR----LQLLVSECRAAGMTAKQVENFCKENGASYKPYPI----KL 277

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             + S RI +   ++  L  +   I  +R
Sbjct: 278 AYEASSRI-SIKALKALLKGLYEVILDSR 305


>gi|256396180|ref|YP_003117744.1| DNA polymerase III subunit delta [Catenulispora acidiphila DSM
           44928]
 gi|256362406|gb|ACU75903.1| DNA polymerase III, delta subunit [Catenulispora acidiphila DSM
           44928]
          Length = 335

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 82/252 (32%), Gaps = 7/252 (2%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           E+ S SLF + +++++ +        +  L   + +      +++  N   K   L    
Sbjct: 61  ELVSPSLFGESRVVVVRSAQDLAAEDVTMLTSALGELADEITLVVVHNGGVKGKALLTAV 120

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           EK  +              +  + +     ++ I++EA + LL  +G +         +L
Sbjct: 121 EKAGAARVDVAKVTKPTERIAFLRDEFKAAKRQITEEAARALLDAVGNELRELAAAAAQL 180

Query: 192 SSYCLEDIL--ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            +   ED    I E  V         +    + +  + G+   A+    + LA+      
Sbjct: 181 IADTAEDGKAPIDETVVAKYYSGRAEVSGFTVADLAVDGRTAQALEQLRWALATGTAPVL 240

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +        + +    +           + +       P K + +++ +R W  + +   
Sbjct: 241 ITSALAAGVRSV--ARVASAPRGARPADLARDLGMP--PWKIDKVRQQVRGWTPDGIGTA 296

Query: 310 LHKIDHRIHLAR 321
           L  +       +
Sbjct: 297 LLAVAEADAAVK 308


>gi|325577503|ref|ZP_08147865.1| DNA polymerase III subunit delta [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160607|gb|EGC72731.1| DNA polymerase III subunit delta [Haemophilus parainfluenzae ATCC
           33392]
          Length = 345

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 115/313 (36%), Gaps = 15/313 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G+D  L+ E  +   ++  +   D  + + ++      +         S  LF 
Sbjct: 19  KVYFLVGTDPLLLSESEDLIHQSALLQGFDEKNQITID---TNTDWPALIEASQSMGLFF 75

Query: 82  KKKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----TS 136
            K++ ++        +L   L + I     + ++++   ++ K    ++   +       
Sbjct: 76  NKQVFILNLPENLTTLLQKNLLQFISGLNEDSLLVLTLPKLSKAAEKQEWFIQANQLEPQ 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + ++C   N   L   ++        S  +EA Q+L  +   + +A +  LQ L     
Sbjct: 136 AIIVNCQTPNSEQLSRWVKHRTKNMGLSADEEAIQLLCYSYENNLLALKQALQLLDL-LY 194

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  +T   VK ++  + V    + I+A + GK   +  +     A  +    LL    +
Sbjct: 195 PDHKLTYNRVKSVVEQSSVFTPFQWIDALLSGKANRSKRILRGLQAEDVQPVILLRTLQR 254

Query: 257 KFQLLE-----KIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310
           +   L      ++       ++  + +    ++  I   +R++   +++      + E L
Sbjct: 255 ELLTLLELTKPQLRNPSLQMSLPTQTLKADFDRLKIWQNRRHLYTAAIQRLTYQKLFEIL 314

Query: 311 HKIDHRIHLARKK 323
            ++     + +++
Sbjct: 315 QELADIERITKQE 327


>gi|121607953|ref|YP_995760.1| DNA polymerase III subunit delta [Verminephrobacter eiseniae
           EF01-2]
 gi|121552593|gb|ABM56742.1| DNA polymerase III, delta subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 351

 Score = 62.7 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 95/300 (31%), Gaps = 16/300 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++  +G +  L  E ++  +       +   S   +       + S       S+SLF+
Sbjct: 18  PLYALHGDEPLLQQEAVDAIRAAARARGYTERSAFTVAGAHF--DWSAVLAAGGSSSLFA 75

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKIAEK-FTS 136
           +++I+ I        K     L+ +        N + ++    + K              
Sbjct: 76  ERQIVEIRIPTGKPGKDGSAALQRLAASAQGNDNTLTLVLLPRLDKAMRAGDWFAALQAH 135

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSI-----SKEAKQILLANLGGDRIASRNELQKL 191
              I   P  +  L   + + L    + +      +   +     + G+ +A+  E+QKL
Sbjct: 136 GSTIQIDPVERSALPQWLAQRLAAQGQRVLAGEEGQRTLRFFADRVEGNLLAAHQEIQKL 195

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           +        +T+  V+  + D     + ++  + + G+      + D   A+      + 
Sbjct: 196 AL-LHPAGELTQAQVEAAVLDVARYDVFKLSESVLAGQTARVQRMLDGLQAAGENEVLVH 254

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               +  + L+++             + +     I   +  + +  L   +   +   L 
Sbjct: 255 WALAEDIRALKRVKDAMNAGRPLPLALRENR---IWGPRERLFERILPQASDAALARLLQ 311


>gi|153839851|ref|ZP_01992518.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ3810]
 gi|149746623|gb|EDM57611.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus AQ3810]
          Length = 222

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 79/209 (37%), Gaps = 9/209 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDTSLDWNQVYDCFQALSLFSS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA- 139
           +++I +E         +   L+ +      + +++I   ++ K     K   K  +    
Sbjct: 76  RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTKAQENAKWF-KALNAKGD 134

Query: 140 -ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +SC   +   L   ++           +++ Q+L     G+  A    L+KL+     D
Sbjct: 135 WVSCLTPDLQRLPMFVQTRCRALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPD 193

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQ 227
             +T   +++ +   +       I+A + 
Sbjct: 194 GELTVVRLEEALSRHNHFTTFNWIDALLA 222


>gi|228988895|ref|ZP_04148944.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770809|gb|EEM19325.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 333

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 111/308 (36%), Gaps = 27/308 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F+ YG ++  I + + +       +    FS+ + +  E    I+    +    SL   
Sbjct: 13  LFVIYGLEQYTIDKELTKIINKDLESDTIDFSVNIYDCDETAVQIAI--EDAEMLSLMMG 70

Query: 83  KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            K ++++N    + +K   D      L++ I     +  +I      K +   +KI +  
Sbjct: 71  PKKVVVKNAMFLTGQKMKKDEHDMDILQKYIDSPNEDTDLIFVVPYEKLDQR-KKIVKSL 129

Query: 135 TSVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
                I         L  +     I+E        +S EA + L   +G +     +ELQ
Sbjct: 130 KEKAIII----EAAVLKSIEAKKWIKEESENLNIELSSEAIEHLYMMVGSNLQMLSSELQ 185

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K++ Y  E   +  + +  ++  T    +  II    +     A       +  K+ + A
Sbjct: 186 KIALYVGEKRKVDTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIA 245

Query: 250 LLHGFLQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
           +     ++F  +   K H+           ++      + P    ++    R +++  ++
Sbjct: 246 IAAMISKQFSRMLEVKAHLHNGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQ 300

Query: 308 ETLHKIDH 315
           + LH++  
Sbjct: 301 QILHRMSQ 308


>gi|282850247|ref|ZP_06259626.1| putative DNA polymerase III, delta subunit [Veillonella parvula
           ATCC 17745]
 gi|282579740|gb|EFB85144.1| putative DNA polymerase III, delta subunit [Veillonella parvula
           ATCC 17745]
          Length = 325

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 109/321 (33%), Gaps = 42/321 (13%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 6   LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK-IAEKFTS 136
           +       +I            L E++++   ++ I++  +++  K     K I EK  +
Sbjct: 58  VFCLVNLPIIRKSGKNSDAWVPLYELLMEYNGDNPIVLIYHDMIDKRIKQNKEILEKIPN 117

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192
                C       L+  I +        ++ +A++ +     L  +   S  R E  +  
Sbjct: 118 H---QCKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYF 174

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250
                + +IT++ +++   D     I     A ++  I   + L  F    K    + + 
Sbjct: 175 LQITGEKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 234

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRNILQESLRIWN 302
           + G L+    L+ +        +S + I           +   I    +   + S RI +
Sbjct: 235 IEGQLR----LQLLVSECRQVGMSVQAIQNLCKDHNSSFKPYPI----KLAYEASPRI-S 285

Query: 303 KNLVRETLHKIDHRIHLARKK 323
              +R  L  +   I  +R  
Sbjct: 286 IKALRALLKGLYEIILDSRSS 306


>gi|238019268|ref|ZP_04599694.1| hypothetical protein VEIDISOL_01132 [Veillonella dispar ATCC 17748]
 gi|237863967|gb|EEP65257.1| hypothetical protein VEIDISOL_01132 [Veillonella dispar ATCC 17748]
          Length = 330

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 112/321 (34%), Gaps = 42/321 (13%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 11  LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 62

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI--KKNNTLRKIAEKFTS 136
           +       +I            L E+I++   N+ I++  +++  K+    + I +K  +
Sbjct: 63  VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGNNPILLIYHDMIDKRIKQNKAILDKIPN 122

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192
                C       L+  I +        ++ +A++ +     L  D   S  R E  +  
Sbjct: 123 H---QCKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQDVPVSFMRTEFDRYF 179

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250
              + D +IT++ +++   D     I     A ++  I   + L  F    K    + + 
Sbjct: 180 LQIIGDKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 239

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWN 302
           + G L+    L+ +      + +S + I           +   I    +   + S RI +
Sbjct: 240 IEGQLR----LQLLVSECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-S 290

Query: 303 KNLVRETLHKIDHRIHLARKK 323
              +R  L  +   I  +R  
Sbjct: 291 IKALRALLKGLYEIILDSRSS 311


>gi|255994727|ref|ZP_05427862.1| DNA polymerase III, delta subunit [Eubacterium saphenum ATCC 49989]
 gi|255993440|gb|EEU03529.1| DNA polymerase III, delta subunit [Eubacterium saphenum ATCC 49989]
          Length = 347

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 32/250 (12%)

Query: 37  LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE-- 94
           ++++ KK         F   V +      +I        +  + SKKK+I+I+    E  
Sbjct: 39  IVDRIKKKHVDPDMLDFDYTVYDGSVAASDIEM---STGTFPMGSKKKLIVIKEAFKEAG 95

Query: 95  -----KKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVLAISCYPDN 146
                K  ++ L EI        I++I S ++     +  +RK+        A   + D 
Sbjct: 96  KSLAVKSEIEKLTEIATNLEGEVILLIGSKKLGGAVVSAPIRKL-------KAAGEFFDI 148

Query: 147 KI----HLMDLIEESLLIGQKSISKEAKQILLANL-------GGDRIASRNELQKLSSYC 195
                      + + +    K+IS +A + L++ L       G D  +  NE  KL+ Y 
Sbjct: 149 GRLSLSQANSFVRKRVEECGKTISYQAAEFLISELKYGSRDSGEDLYSVANEAIKLA-YS 207

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +   I +  +  +   +    +  +++A   GK   A+ L    +       +LL   +
Sbjct: 208 TDKAEIKKDDISKVTSKSLENNVFLLLDAIGYGKKDKALRLLRDLMIPGKNEFSLLGLII 267

Query: 256 QKFQLLEKIH 265
            + ++L  I 
Sbjct: 268 SQLEMLLAIR 277


>gi|228949803|ref|ZP_04112013.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809861|gb|EEM56272.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 333

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 109/303 (35%), Gaps = 17/303 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F+ YG ++  I + + +       +    FS+ + +  E    I+    +    SL   
Sbjct: 13  LFVIYGLEQYTIDKELTKIINKDLESDTIDFSVNIYDCDETAVQIAI--EDAEMLSLMMG 70

Query: 83  KKIILIENL---STEKKVLDC-----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            K ++++N    + +K   D      L++ I     +  +I      K +   + +    
Sbjct: 71  PKKVVVKNAMFLTGQKMKKDEHDMDILQKYIDSPNEDTDLIFVVPYEKLDQRKKVVKLLK 130

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + I       I     I+E        +S EA + L   +G +     +ELQK++ Y
Sbjct: 131 EKAIIIEAAVLKSIEAKKWIKEESENLNIELSSEAIEHLYMMVGSNLQMLSSELQKIALY 190

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             E   +  + +  ++  T    +  II    +     A       +  K+ + A+    
Sbjct: 191 VGEKRKVDTEVIHLLVKKTLEQNVFIIIEKIGKKLYAEAHSFYKELIIQKVETIAIAAMI 250

Query: 255 LQKFQLLE--KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
            ++F  +   K H+           ++      + P    ++    R +++  +++ LH+
Sbjct: 251 SKQFSRMLEVKAHLHNGAEQKQLASLL-----GVQPYAAKVIANQARGFHETTIQQILHR 305

Query: 313 IDH 315
           +  
Sbjct: 306 MSQ 308


>gi|308095341|ref|ZP_07663249.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308089336|gb|EFO39031.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus
           Peru-466]
          Length = 192

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 5/163 (3%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                   +++ Q+L     G+  A    L+KL+     D  +T   +++ +   +    
Sbjct: 8   RALGLKPDQQSLQMLAQWHEGNLFALSQSLEKLAL-LYPDGELTVVRLEEALSRHNHFTT 66

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
              I+A + GK   A  +     A  + +  L+    ++F  L  +H  ++ + +   ++
Sbjct: 67  FNWIDALLAGKANRAQRILRQLEAEGIETVILIRSVQKEFNQLLSMH--QDLTQMPISQV 124

Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            +K    +   KR +   +L   + + +   +  +      A+
Sbjct: 125 FEKYR--VWQNKRPLYNAALMRLSASRICALISLLAQAEIKAK 165


>gi|237750842|ref|ZP_04581322.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879]
 gi|229373287|gb|EEO23678.1| DNA polymerase III subunit delta [Helicobacter bilis ATCC 43879]
          Length = 329

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 121/358 (33%), Gaps = 49/358 (13%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M      KF+              + YG    LI    N   K ++           +  
Sbjct: 1   MTRAMLDKFLLSGVP------RAILLYGDSDFLISYYSNMILKKLNS------ECRRMYF 48

Query: 61  LEIQKNISTFWNEINSTSLFSKKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIK- 117
            E   +     N +   SLF    I  + +     +K++ D L   ++++  N  +I++ 
Sbjct: 49  EEY--DHQEVLNCLGVNSLFGGVNILALKLYATLNKKQIQDIL--YMLEHNANSFLIVEF 104

Query: 118 -----------SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166
                      +   K    L K   K   +  +  YP  +  ++ ++          + 
Sbjct: 105 LKSPTITDAEYAKRFKAMAALFKPTAKLKDIFEVRLYPPFRDDMVKILYNRACELGLKVD 164

Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
                 LL     D   + NEL K   Y      IT Q ++++      + +E ++N   
Sbjct: 165 SSLLNFLLDVQHDDLAIAHNELTKFIYY----ETITPQLIEELSYSLGDVKLESLLNCLF 220

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKN 285
             + +   ++        M +  LL    + F +L K++   K   N+  ++++      
Sbjct: 221 DKQGH-LGLILQTLHDEGMDNMELLREITRYFYILFKLYGHSKTHGNMDSKEVLGYKAPP 279

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHK---IDHRIHLARKKKYLEKNIIFQTILYIAQ 340
            +            +W +  ++ T  K   +   I+  R ++   K+++ Q ++ I Q
Sbjct: 280 QLFN----------VWQRRSLKITTEKYLMLFDIINTWRVQQLQGKDVVMQHLIAIQQ 327


>gi|256832784|ref|YP_003161511.1| DNA polymerase III, delta subunit [Jonesia denitrificans DSM 20603]
 gi|256686315|gb|ACV09208.1| DNA polymerase III, delta subunit [Jonesia denitrificans DSM 20603]
          Length = 330

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 117/326 (35%), Gaps = 17/326 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G++ GL  +        IS       ++                  + S SLF+
Sbjct: 20  PIVLIQGTE-GLFVDRA--LTALISQARQADPAVERTTLAAATYQPQMLSV-LTSPSLFN 75

Query: 82  KKKIILIEN-LSTEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           + ++I+I++  +T   ++  + E + +   +  +I++    ++    L  + +    V+ 
Sbjct: 76  EPRLIIIDHCEATTDALITDVPEYLTQPADDVWLILVHRGGVRGKKMLDAVKKAGVPVVQ 135

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                 +   +   + +     ++  S +A + L+  LGGD         +L      D 
Sbjct: 136 CEPMKKDADKIAF-VTKEFQRARRQASADAVRALVGALGGDVRELAAACDQLI--SDTDG 192

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           L+T+  V+        +   ++ +A + G    A+ L    +A+      L+     K +
Sbjct: 193 LVTDSVVERYYGGRVEVTGFKVADAAVLGDTAQALTLLRHAMATGADPVPLVAALAMKLR 252

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            L K+  +++             +  + P + +  +  L  W  + + + +  +     +
Sbjct: 253 ALAKVSGMRQGK--------TAKDTGLAPWQIDRAKRDLAGWGPDGLAQAICAVAEADEM 304

Query: 320 ARKKKYLEKNIIFQTILYIAQTACKN 345
            +      +  I + +  +A  A + 
Sbjct: 305 VKGGGRDPEYAIERAVRIVADLAGRR 330


>gi|189501117|ref|YP_001960587.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides BS1]
 gi|189496558|gb|ACE05106.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides BS1]
          Length = 348

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNISTFWNEINSTSLF 80
            ++ F+G +  +  EL +  +KN      D   +  VL   ++        +  +   +F
Sbjct: 15  PIYFFHGPESFMKEELTDLVRKNTFPAEEDAAVNTTVLYGQDVT--PGEIVSMASEFPMF 72

Query: 81  SKKKIILIE---------NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           + +K+++++         +   +K  +D           + I+I+ +++I K +      
Sbjct: 73  TARKLMIVKQFDKFKKQGSRDKQKLHIDQFIRYTNSPALSTILILDADQIDKRD-----L 127

Query: 132 EKFTSVLAISCYPD----NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +K           D        +      SL         EA +   A +         E
Sbjct: 128 QKAPFRELQPFRHDFPLVTNPDIFASDRASL--YGWEFEPEALKAFSAYIQPSSREIARE 185

Query: 188 LQKLSSYC---LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           ++KL  Y      +  IT   V + +  +    + E+  A     + 
Sbjct: 186 VEKLVMYASSKSNEKRITGADVFECVGISKQYNVFELEKALAGKNVR 232


>gi|85713009|ref|ZP_01044047.1| DNA polymerase III, delta subunit [Idiomarina baltica OS145]
 gi|85693178|gb|EAQ31138.1| DNA polymerase III, delta subunit [Idiomarina baltica OS145]
          Length = 361

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 112/309 (36%), Gaps = 11/309 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +G +  L  +     + +++             A + + +      +  S SLF 
Sbjct: 19  PVILLFGDELLLQQDCDEIIRHSLNQQLSSTPEYQRWRA-DAEFDWGQLSLQQQSMSLFG 77

Query: 82  KKKI--ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVL 138
              I  I +      K   D L + + +   + ++I+K   +KK     +  +      L
Sbjct: 78  SFTILDIELPEAKPGKPGSDALVDYVKQPNPDQLLILKGPRLKKEQLNSRWFKALAAQAL 137

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +  +   +  L   + +     Q  +S+ A ++L     G+  A   E  K S      
Sbjct: 138 QVKIFTPKRSQLPRFVMQRAQRHQLQLSQTAAEVLSNWFEGNLFALEQEFIKWSL-LPNP 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I E+ + + + D+    +  +  +     +  AI   +  L + +  + L     ++ 
Sbjct: 197 PQIDEKQIYERVADSSQFDVFGLQESIAAQDLSQAIHRLERLLDNDIELNILNWMLQREV 256

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL---HKIDH 315
           Q++ ++H+  +   +  + + ++    +   +++         + N +++ +    +I+ 
Sbjct: 257 QIISQLHVNAQ-HGLDHQAVFKQF--AVWSSQQSAYSARASTHSDNSIKQMIALAERIER 313

Query: 316 RIHLARKKK 324
            I   R + 
Sbjct: 314 AIKGDRDEP 322


>gi|332670875|ref|YP_004453883.1| DNA polymerase III subunit delta [Cellulomonas fimi ATCC 484]
 gi|332339913|gb|AEE46496.1| DNA polymerase III, delta subunit [Cellulomonas fimi ATCC 484]
          Length = 338

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 108/327 (33%), Gaps = 17/327 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L    +++  +           +  L+A E           + S SLF+
Sbjct: 25  PIVLVSGPEDLLAERAVDRLVERARAA-DPGVEVSRLDAAEYAVGTLRV---VTSPSLFA 80

Query: 82  KKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139
           + +++++  L      ++  +   +       +++++ +   +    L  +  +   V  
Sbjct: 81  EDRVVVVTGLERATDDLVADVTAYLEAPADGVVVVLRHAGGQRGKKLLDAL--RTRRVPT 138

Query: 140 ISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           ++C    +       +   L    +    +A + L+  +G D         +L       
Sbjct: 139 VTCDVVKSDADKSSFVSAELRRAGRRADAQAVRALVDAVGSDLRELAAACSQLV--ADTT 196

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            LI    V+             + +A I G    A+ L    LA+ +    ++     K 
Sbjct: 197 GLIGPDVVERYYGGRIEATGFRVADAAIAGSSGQAVALLRHALATGVDPVPIVAALAAKL 256

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           ++L K+  ++     +  ++       + P + +     LR W    +   +  +     
Sbjct: 257 RVLAKVAAVRGRGTAAVREL------GLAPWQTDRALADLRRWTPEGLALAISSVAQADA 310

Query: 319 LARKKKYLEKNIIFQTILYIAQTACKN 345
             + +    +  + + +L +A  +   
Sbjct: 311 EVKGESRDPRFAVERAVLRVAAASGTT 337


>gi|197122950|ref|YP_002134901.1| DNA polymerase III delta [Anaeromyxobacter sp. K]
 gi|196172799|gb|ACG73772.1| DNA polymerase III delta [Anaeromyxobacter sp. K]
          Length = 465

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163
              H+++I + +I     + K        +      +         L  ++E  L    K
Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            + +  +  L   +G D     +E+ KL++Y  +  +I    V  ++          + N
Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           A     +  A+ + D  +A       LL       + L         +
Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLAATVRRLVVERERARAA 375


>gi|332289543|ref|YP_004420395.1| DNA polymerase III subunit delta [Gallibacterium anatis UMN179]
 gi|330432439|gb|AEC17498.1| DNA polymerase III subunit delta [Gallibacterium anatis UMN179]
          Length = 346

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 122/316 (38%), Gaps = 15/316 (4%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           ++  ++  G D  LI E   Q  +            +V+++     + +T + ++ +  L
Sbjct: 18  TYPAYLLVGQDPLLIEESKYQLFQFGKQQGATQKQEIVIDS---NTDWATLFTDLQTFGL 74

Query: 80  FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           FS+++I L         ++   L++++     + I I +  ++      +   +    + 
Sbjct: 75  FSQQQIFLFTLPDNINAQLQQQLQQLVSLLHSDIIAIFQIAKLTTTIEKQAWFKTLEQIK 134

Query: 139 AIS--CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            +   C       L   I++   + + SI  EA ++L  N   +  A +  LQ +     
Sbjct: 135 TLQINCQTPTLEQLPQWIQQRAKMMELSIDNEAIELLAYNYENNLAALKQTLQLMQL-LY 193

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFL 255
               IT  +    I  + V    + I+A +QGK Y  I + +       +    LL    
Sbjct: 194 PQQKITLINAGQCIEQSSVFTPFQWIDAILQGKKYRCIRILEQLQNEGDVQPVVLLRILQ 253

Query: 256 QKFQLL------EKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRE 308
           ++  LL      +KI I      ++ + + QK ++  I   +R +   +++  N + + +
Sbjct: 254 KELLLLLRLGSDDKIKIENTQQMLNSQLLRQKFDQYKIWKNRRPLYSAAIQRLNYHRLYD 313

Query: 309 TLHKIDHRIHLARKKK 324
            +  +       +++ 
Sbjct: 314 AIQHLAAIEKAIKQQG 329


>gi|325977813|ref|YP_004287529.1| DNA polymerase III subunit delta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177741|emb|CBZ47785.1| DNA polymerase III subunit delta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 353

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 101/306 (33%), Gaps = 29/306 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +    +     D     F +  ++  + + +       + S  
Sbjct: 26  ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 78

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL           + K L   E  +   +    +II +  ++     L 
Sbjct: 79  FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 138

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L    ++       +      + LL     D       +
Sbjct: 139 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 196

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L SY  +D  IT   +   I  T    I ++    + GKI  A  L            
Sbjct: 197 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 255

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304
            L+   L +F++  ++ I+      + ++ +        + + P +        R  +  
Sbjct: 256 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 314

Query: 305 LVRETL 310
            +++ L
Sbjct: 315 FLKKAL 320


>gi|47459195|ref|YP_016057.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K]
 gi|47458524|gb|AAT27846.1| DNA polymerase III delta subunit [Mycoplasma mobile 163K]
          Length = 310

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 119/320 (37%), Gaps = 24/320 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG++  LI+  I +                 +   E + NI    NEI S  LFS 
Sbjct: 1   MYFIYGNENYLIWNQIKKLISKSKTEP--------IIFDE-ESNIYELINEIESYDLFSN 51

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNH------IIIIKSNEIKKNNTLRKIAEKFTS 136
           +K I+++NL   KK    L EI+I ++ N       I +++ ++I   N+L       + 
Sbjct: 52  EKTIIVKNLWLLKKEDKKLSEILISSLENINSKYKIIFLLEEDKINNKNSLIHFLLNNSK 111

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           V  +  Y  N   L+ +IE+ ++  + +IS EA    +  +  D      E+ KL     
Sbjct: 112 VDNVKKY--NPKELISVIEKIIVAKKGTISHEAIIEFILKVPNDLRIIIQEIDKLLLLT- 168

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               IT++ V     D         INA  +             + +      LL     
Sbjct: 169 --KDITKEIVISETSDYFESDAFSFINAINEFDFKKIYETLQEKIINYEEIGQLLGQLNS 226

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
              L   IH   +    + +KI ++   +     R      L+      +   + K +  
Sbjct: 227 HLNLSFLIHTNFQL-GKNLKKIEEQYNIH-HFRLRKAFD-FLKKIGYKNLVYLISK-NAE 282

Query: 317 IHLARKKKYLEKNIIFQTIL 336
           +  A K   +++ I  + ++
Sbjct: 283 LDFAIKNGSIDEIIGIKNLI 302


>gi|294793760|ref|ZP_06758897.1| putative DNA polymerase III, delta subunit [Veillonella sp. 3_1_44]
 gi|294455330|gb|EFG23702.1| putative DNA polymerase III, delta subunit [Veillonella sp. 3_1_44]
          Length = 330

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 110/317 (34%), Gaps = 38/317 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 11  LIYGDEPQLIEEEKRKFLSAYPDIP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 62

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           +       +I            L E+I++   ++ I++  +++  +  +++  E    + 
Sbjct: 63  VFCLVNLPIIRKSGKNSDAWVPLYELIMEYDGDNPIVLIYHDM-IDKRIKQNKEILNKIP 121

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194
              C       L+  I +        ++ +A++ +     L  +   S  R E  +    
Sbjct: 122 NRECKRLEGADLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYFLQ 181

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252
              + +IT++ +++   D     I     A ++  I   + L  F    K    + + + 
Sbjct: 182 ITGEKVITKEFLEENGSDYGAKNIFTFKEALLKKDIDTLLELFPFMFGYKELDRAMSYIE 241

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304
           G L+    L+ +      + +S + I           +   I    +   + S RI +  
Sbjct: 242 GQLR----LQLLVSECRQAGMSVQAIQNLCKDYDSSFKPYPI----KLAYEASPRI-SIK 292

Query: 305 LVRETLHKIDHRIHLAR 321
            +R  L  +   I  +R
Sbjct: 293 ALRALLKGLYEIILDSR 309


>gi|282877562|ref|ZP_06286377.1| DNA polymerase III, delta subunit [Prevotella buccalis ATCC 35310]
 gi|281300134|gb|EFA92488.1| DNA polymerase III, delta subunit [Prevotella buccalis ATCC 35310]
          Length = 339

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 97/264 (36%), Gaps = 10/264 (3%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +   I ++ +   +N+       F+  ++   +I  N +   +      + +
Sbjct: 22  PIYILMGEESYFIDKISDYIAENVLQPEERDFNQNIVFGSDI--NAAQIVDLAKGYPMMA 79

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLA 139
           + ++++++     +   D +E+ +   + + I+++  K+  I +   L  I       + 
Sbjct: 80  EYRVVIVKEAQNLRG-TDVIEKYLKNPVKSTILVLCHKNGTIDRRKKL--IGRSEALGVV 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                  +  L   I   L     +I  ++  ++  ++G D     + L KL     ED 
Sbjct: 137 FESKKMRESELPSFIASYLKQKNVTIDYKSTAMIADHIGSDLNRMISVLDKLLISLPEDN 196

Query: 200 LITEQHV-KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
            +    V +  I  +      E+ +A +   ++ A  +  +F  +      +A L     
Sbjct: 197 RVVVPEVIEKQIGVSKDFNAFELRSALVNRDVFKANQIIKYFDNNPKAGSIYAFLPLLFS 256

Query: 257 KFQLLEKIHIIKECSNISFEKIIQ 280
            FQ L   +     +  +  + + 
Sbjct: 257 YFQNLMIAYYAPSKNENAVAQFLD 280


>gi|284990148|ref|YP_003408702.1| DNA polymerase III subunit delta [Geodermatophilus obscurus DSM
           43160]
 gi|284063393|gb|ADB74331.1| DNA polymerase III, delta subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 330

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 97/317 (30%), Gaps = 14/317 (4%)

Query: 33  LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL- 91
           L+        +   +  H    L  L A  +   +    + + + SLF   +++++  + 
Sbjct: 21  LLRSRAVSAVRAAVLERHPDAELHELPAQGL--PVGQLAD-VLAPSLFGTHRLVVVTGVH 77

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151
                +++ L         +  +++  +  K+N TL K      + +       +    +
Sbjct: 78  EAAGALVEALTGYTKDPDPDLTLVVVHSGGKRNETLVKAFTAAGAAVDDCPKVSSVGDRI 137

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             +   +      I+ +A   L+  +G D     +   +L S       I    V     
Sbjct: 138 AFVRNEVRSAGGRITPDAASALVEAIGADLRQLSSAATQLVSDFGGS--IDADAVARFHR 195

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
               +    +    + G    ++ +  + L   +    +          +     +    
Sbjct: 196 GQAEVSGFTVAERVLVGDRQGSLEMLRWALQRGVAHVLIADAIA---DGVRTAARVSSVR 252

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH---KIDHRIHLARKKKYLEK 328
           + +   + +  +    P K    Q   R W+   +++ L    +++  +  A        
Sbjct: 253 SSNPGDLARTLKMP--PWKVKRAQSQARGWSIEGLQQALGVAAELNADVKGAAASADYAL 310

Query: 329 NIIFQTILYIAQTACKN 345
               + I+ I +   + 
Sbjct: 311 ESAIRRIVAIRRETGRG 327


>gi|239621304|ref|ZP_04664335.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515765|gb|EEQ55632.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 329

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 15  PVTVVPGGDSYLNDARTKALCAQALKARPDA-ELIELDATSADQYA---FDEAVSPSLLS 70

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   ++K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 71  DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 130

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  ++ E      + +   A Q L++ LGG         ++L  + 
Sbjct: 131 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 188

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 189 FDDNPMGLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 248

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 249 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 301

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 302 ADEQSKTNG 310


>gi|86157739|ref|YP_464524.1| DNA polymerase III subunit delta [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774250|gb|ABC81087.1| DNA polymerase III, delta [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 465

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163
              H+++I + +I     + K        +      +         L  ++E  L    K
Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            + +  +  L   +G D     +E+ KL++Y  +  +I    V  ++          + N
Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           A     +  A+ + D  +A       LL       + L         +
Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLASTVRRLVVERERARAA 375


>gi|326773587|ref|ZP_08232870.1| DNA polymerase III, delta subunit [Actinomyces viscosus C505]
 gi|326636817|gb|EGE37720.1| DNA polymerase III, delta subunit [Actinomyces viscosus C505]
          Length = 318

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 105/300 (35%), Gaps = 18/300 (6%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111
            +  L A   +       + + S SLF + +++ +  L   T+  + D +  +   +   
Sbjct: 34  EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVGAADPEV 90

Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170
            +I+  +   +    L  I  K +    I C    +      L+   +    +SI+ EA 
Sbjct: 91  SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAVKSAKDKSSLVVADVRRAGRSIAPEAV 148

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             L+  LG D     + + +L         I+  HV+             + +A   G  
Sbjct: 149 GALVDALGSDLRELCSAVDQLL--ADTQGTISVDHVRTYYAGRIEATGFTVADAAAAGNT 206

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
             AI      +A+     A++     K + L ++         +  + +   E  + P +
Sbjct: 207 PAAITALRHAVATGTDPVAIVAALAMKVRQLARVAA-------AGGRRMSPAELGMAPWQ 259

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYK 350
            +  +  L+ W+ + +  ++  +      A+         + + +L I   A ++ +  +
Sbjct: 260 VDRARRELQGWSDDALATSILAVARADAEAKGASRDPVYAVERAVLTICN-ARRSGSRRR 318


>gi|303231441|ref|ZP_07318172.1| putative DNA polymerase III, delta subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513878|gb|EFL55889.1| putative DNA polymerase III, delta subunit [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 326

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 113/329 (34%), Gaps = 53/329 (16%)

Query: 21  HFVFIFYGSDKGLIFELINQF---KKNISIT-YHDPFSLVVLNALEIQKNISTFWNEINS 76
           + V++ YG++  LI E   +F    KN+ +   HD            +   S    ++  
Sbjct: 2   NQVYLIYGNEPQLIEEEKQKFFLSHKNLDVRVLHD------------EAGPSKISEQLME 49

Query: 77  TSLFSKKKIILIENLSTEKKVL-------DCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            SLF   K+  + NL   KK         D L E+++    ++ ++I  +++  +  L++
Sbjct: 50  DSLFGDAKVFCLINLPILKKAGQKESQEWDALAELLMNYTGDNPVLIIYHDM-VDKRLKQ 108

Query: 130 IAEKFTSVLAIS---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIAS 184
                  + AI    C       L+  I +       +++ +    L   L    D   +
Sbjct: 109 ---NKKILDAIPNKECKRLEGDDLLMWIRQYCTSNGYTLTPDGHDYLSHLLELWQDVPVA 165

Query: 185 --RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
             R E  +          I    + +   +     I     A ++  +   + L  F  +
Sbjct: 166 FMRTEFDRYFLLLGNHKKIDRSFLMEHSSNYGAKNIFTFKEALLKQDVNTLLELFPFMFS 225

Query: 243 SKM--PSHALLHGFLQKFQLLEKIHIIKECSNISFEKI-------IQKTEK-NIIPMKRN 292
            K    +   + G L+    L+ +      + ++ +++           +   I    + 
Sbjct: 226 YKEIDRAMGYIEGQLR----LQLLVSECRAAGMTAKQVENFCKENGASYKPYPI----KL 277

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLAR 321
             + S RI +   ++  L  +   I  +R
Sbjct: 278 AYEASSRI-SIKALKALLKGLYEVILDSR 305


>gi|313144570|ref|ZP_07806763.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818]
 gi|313129601|gb|EFR47218.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818]
          Length = 342

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 25/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG D  ++     +  +++       F     N + I          ++  SLF 
Sbjct: 25  RASLLYG-DSFMVGYYGKKIAQSLKSEEKTTFYFDEYNNISIN-------TLLSQGSLFG 76

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-------IKSNEIKKN-NTLRKIAE 132
              +++++ N    K  ++     +  N  N +II         S +  ++   +     
Sbjct: 77  TSSLVVLKINHRLSKADIELFLHSLSANTHNALIIEYYQAQNKSSGDYMRDCKGIVGYFH 136

Query: 133 KFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                  SV+ +  +  N    +  ++E        I       +L     D   S NEL
Sbjct: 137 HPKMPKNSVVEVRFFEPNMRECIGFLQERSKELGLKIEDRILTQILNIQNNDIALSLNEL 196

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +K S Y      I    V  +        IEE+  A +       I +        +   
Sbjct: 197 EKFSIYAG--KSIDMSEVNLLCDGVGSFSIEELCCAVM--DKKPFIHILQNIYEEGVNEI 252

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
            ++    + F  L       +       + I        
Sbjct: 253 MMIGEIQRFFYQLFLFFAYAKSYGSINAREILGYNPPNH 291


>gi|224438130|ref|ZP_03659065.1| DNA polymerase III subunit delta [Helicobacter cinaedi CCUG 18818]
          Length = 333

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 25/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG D  ++     +  +++       F     N + I          ++  SLF 
Sbjct: 16  RASLLYG-DSFMVGYYGKKIAQSLKSEEKTTFYFDEYNNISIN-------TLLSQGSLFG 67

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-------IKSNEIKKN-NTLRKIAE 132
              +++++ N    K  ++     +  N  N +II         S +  ++   +     
Sbjct: 68  TSSLVVLKINHRLSKADIELFLHSLSANTHNALIIEYYQAQNKSSGDYMRDCKGIVGYFH 127

Query: 133 KFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                  SV+ +  +  N    +  ++E        I       +L     D   S NEL
Sbjct: 128 HPKMPKNSVVEVRFFEPNMRECIGFLQERSKELGLKIEDRILTQILNIQNNDIALSLNEL 187

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +K S Y      I    V  +        IEE+  A +       I +        +   
Sbjct: 188 EKFSIYAG--KSIDMSEVNLLCDGVGSFSIEELCCAVM--DKKPFIHILQNIYEEGVNEI 243

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
            ++    + F  L       +       + I        
Sbjct: 244 MMIGEIQRFFYQLFLFFAYAKSYGSINAREILGYNPPNH 282


>gi|325473508|gb|EGC76702.1| hypothetical protein HMPREF9353_02191 [Treponema denticola F0402]
          Length = 202

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 10/197 (5%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
              L      I  EA   LL  +  +  A +     L  Y  +   I +++++ +     
Sbjct: 2   RSFLFREGIEIEDEAVDELLELVENNTDALKTACSHLVLYFQKGSHIGQENIEKLFAHNK 61

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASK-MPSHALLHGFLQKFQLLEKIHIIKECSNI 273
                 + NA   G +  A+ ++   + SK      ++ G    F+ L+  H I   +  
Sbjct: 62  EETPFSLFNALTMGNLETALSISQKIILSKNSSPVQIIAGLSYCFRRLQDWHKIHRDNEY 121

Query: 274 SFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
             +  +++         +  L +   + ++WN+    + +  +       R      +NI
Sbjct: 122 LDDFALKRFG----FSGKTALAQYKRAAKLWNEVQCVKIIALLSETDLELRSLGTGLQNI 177

Query: 331 IFQTILYIAQTACKNNN 347
           +    LY  + ACK+ N
Sbjct: 178 VMDMCLY--EIACKSGN 192


>gi|292669986|ref|ZP_06603412.1| hypothetical protein HMPREF7545_0950 [Selenomonas noxia ATCC 43541]
 gi|292648398|gb|EFF66370.1| hypothetical protein HMPREF7545_0950 [Selenomonas noxia ATCC 43541]
          Length = 348

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 89/286 (31%), Gaps = 31/286 (10%)

Query: 23  VFIFYGSDKGLIFELINQ--FKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           VF+  G +     E   +   ++ + +      +L+    +     + T    + +   F
Sbjct: 18  VFLLAGEEP-YYTERAEEAILRRLLPVPEERADALIRYEEM---PPLDTLMETLETAPFF 73

Query: 81  SKKKIILIENLSTEKK----------------VLDCLEEIIIKNICNHIIIIKSNEIK-K 123
           + K ++L+ + +  +                 V D L  ++         +        K
Sbjct: 74  TDKMVVLVRDAAVFRAGKKKEEDDDAPVSKDTVTDRLAALLADLPPTTYAVFTLGAKPDK 133

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG---- 179
              L +  EK   VL  +       ++   +   L    +S+   A+   L  +      
Sbjct: 134 RRKLYQTVEKHGRVLESAPLR--PWNVEGWLNGRLREMGRSMHPRARAFFLNIVSMMQTI 191

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
                  +L+KL+ Y  ++   +E  ++    +   + +  + +A     I  A+ L   
Sbjct: 192 SLAFLDRQLEKLALYT-DNSQFSEDDLRAAFSEMPEVSVFALTDAVSARDIRRALDLLAR 250

Query: 240 FLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEK 284
             A  +    LL    +  + L +   ++   +       +     
Sbjct: 251 CRADGVHFTVLLVLLTRHVRQLWQAKRLLMNGTPPKGLGKVMGMHP 296


>gi|317482800|ref|ZP_07941810.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689321|ref|YP_004209055.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691333|ref|YP_004220903.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|316915762|gb|EFV37174.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456189|dbj|BAJ66811.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460657|dbj|BAJ71277.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 323

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   ++K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 65  DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  ++ E      + +   A Q L++ LGG         ++L  + 
Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|189439195|ref|YP_001954276.1| DNA polymerase III subunit delta [Bifidobacterium longum DJO10A]
 gi|227547367|ref|ZP_03977416.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|189427630|gb|ACD97778.1| DNA polymerase III delta subunit [Bifidobacterium longum DJO10A]
 gi|227212182|gb|EEI80078.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 323

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNDARTKALCAQALKARPDA-ELIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   ++K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 65  DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  ++ E      + +   A Q L++ LGG         ++L  + 
Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 183 FDDNPMGLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|291456920|ref|ZP_06596310.1| DNA polymerase III, delta subunit [Bifidobacterium breve DSM 20213]
 gi|291382197|gb|EFE89715.1| DNA polymerase III, delta subunit [Bifidobacterium breve DSM 20213]
          Length = 323

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L      +          D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNGMRTKELCSQALQARPDA-ELIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ I NL   ++K  + L        K+     I+I      +K    + ++ +   
Sbjct: 65  DTAVVKIINLQNADEKFAETLVSYTKQAAKDPNGSSIVICQHEGGVKGRKIIDQLTKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             + +         L  ++ E      + +   A Q L++ LGG         ++L  + 
Sbjct: 125 RKVDVPDLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            ED  I        +     +    + +  ++G+   AI++    +       AL+    
Sbjct: 183 FEDNPIGLDRANQYLTANPQVTGFAVADKAVEGRTAEAIVMMRAAVEQGTDPIALIGALA 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSPGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|313890756|ref|ZP_07824381.1| DNA polymerase III, delta subunit [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120857|gb|EFR43971.1| DNA polymerase III, delta subunit [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 343

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 25/272 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            V +  G D G   ++  +  K I+    D     F L     LE + +       + S 
Sbjct: 17  PVTLITGDDLGQFSQIKEEVLKIIAYDKDDLTYSYFDLSEGGYLEAEMD-------LLSL 69

Query: 78  SLFSKKKIILIE---NLSTEK------KVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+  K+++ +   +++T+K        L   E  + K +    +II +  ++     +
Sbjct: 70  PFFADTKVVIFDHFLDITTQKKNYLKENELKSFESYLEKPLATTKLIIFAPGKLDGKRRI 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++      I   P  +  L    +                 +L    GD       
Sbjct: 130 VKLLKRD--AEVIEALPLKEAELRQYFQSKGKEIGLVFDSGVFDKILLKSNGDFSQMAKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L +Y      IT + V + I  T    I ++    +QG       L      +    
Sbjct: 188 LLFLKTYK-GQGNITLEDVDEAIPKTLHDNIFDLSRFILQGSSDQVTELVHDLRLAGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
             L+   L +F+L  +I ++ +    + ++I+
Sbjct: 247 IKLIAILLGQFRLYLQIKLLMQ-DGKNEQQIV 277


>gi|220917742|ref|YP_002493046.1| DNA polymerase III delta [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955596|gb|ACL65980.1| DNA polymerase III delta [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 465

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQK 163
              H+++I + +I     + K        +      +         L  ++E  L    K
Sbjct: 208 PPGHVLVIAAGKIDGRLPVVKKLAAAGRRVTTQLEKEGTWDAQRLVLGPVLEALLAGTGK 267

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            + +  +  L   +G D     +E+ KL++Y  +  +I    V  ++          + N
Sbjct: 268 RVDRGGEARLAELVGEDARTLASEVAKLAAYVGDRKVIGAADVDAVVTRVASDPFFALGN 327

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           A     +  A+ + D  +A       LL       + L         +
Sbjct: 328 AVEARDLPLAMGVLDRSVADGASPFMLLGSLAATVRRLVVERERARAA 375


>gi|116326866|ref|YP_796586.1| DNA-directed DNA polymerase, delta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116329813|ref|YP_799531.1| DNA-directed DNA polymerase, delta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119610|gb|ABJ77653.1| DNA-directed DNA polymerase, delta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123502|gb|ABJ74773.1| DNA-directed DNA polymerase, delta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 362

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 16/240 (6%)

Query: 37  LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL----- 91
           +  ++K+ I     +PF +V+   +    +   F ++  +  +FS +K+ ++++      
Sbjct: 39  IAEKYKEEIR-KTGEPFEIVI--FVSEPGDFERFQSDAFNLDMFSNRKLFIVKSGLEFFK 95

Query: 92  ---STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVLAISCYPDNK 147
              S + K  + L++       +  ++I  N  +  N + +I   K   +   + YP+  
Sbjct: 96  PISSGKGKNNESLQKRFSNFPNSIQLLIHYNHWEVPNKILQIFGGKANLIKTKNFYPNET 155

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
                 + ++       + ++A    L  +     A    L KL  Y L     T+Q V+
Sbjct: 156 R---AGLLQACKEIGVQLDEDAINEFLHKIPPSMGAYLQSLSKLKLY-LVKKSFTKQDVE 211

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           D++  +  L    +++  ++            F + K      L    ++   L K  II
Sbjct: 212 DVLLFSGELNSSGLVDFFMESDRIRFFKELKKFQSGKDSLLLFLSILKERVDQLRKYKII 271


>gi|306830924|ref|ZP_07464086.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426947|gb|EFM30057.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 345

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 101/306 (33%), Gaps = 29/306 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +    +     D     F +  ++  + + +       + S  
Sbjct: 18  ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL           + K L   E  +   +    +II +  ++     L 
Sbjct: 71  FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L    ++       +      + LL     D       +
Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L SY  +D  IT   +   I  T    I ++    + GKI  A  L            
Sbjct: 189 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304
            L+   L +F++  ++ I+      + ++ +        + + P +        R  +  
Sbjct: 248 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306

Query: 305 LVRETL 310
            +++ L
Sbjct: 307 FLKKAL 312


>gi|261493585|ref|ZP_05990105.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495423|ref|ZP_05991871.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308928|gb|EEY10183.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310767|gb|EEY11950.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 349

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 26/323 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  L+ E  +       +   D    V +       N    +    S  LF 
Sbjct: 27  PFYLLTGNDLLLVNETKDAIIHTARLNGFDEKKEVEIKNDT---NWEELFEAAQSMGLFF 83

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139
            ++I+++    S        L E+      + + I+   +  K    +    +   +++ 
Sbjct: 84  ARQIMVLNFPDSPTATQFKKLAELCAFIHSDLLFILHLPKFSKTMKKQAWFTQIELNLVQ 143

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+C       L   +          I  EA Q+L  +  G+ +A +  LQ L      D 
Sbjct: 144 INCQTPELSKLPQWVSHRAKAMNLQIENEANQLLCYSYEGNLLALKQALQLLQL-NATDG 202

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT    ++++  +      + I+A  +GKI  A  +       ++ +  LL    ++  
Sbjct: 203 KITLTKAQEVVEHSAQFTPFQWIDALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELM 262

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW--NKNLVRETLHKI---- 313
           +L +I         +   ++   +   I   R      L+IW   +    +   ++    
Sbjct: 263 ILLEI-------TRNPTAVVSSEQSLFIGNLRTEFDR-LKIWQNRRPFYNQITQRLTYQK 314

Query: 314 ------DHRIHLARKKKYLEKNI 330
                        + K+    +I
Sbjct: 315 LYALIQQLAELERKVKQEFSDDI 337


>gi|306833041|ref|ZP_07466173.1| DNA-directed DNA polymerase III delta subunit [Streptococcus bovis
           ATCC 700338]
 gi|304424940|gb|EFM28074.1| DNA-directed DNA polymerase III delta subunit [Streptococcus bovis
           ATCC 700338]
          Length = 345

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 100/306 (32%), Gaps = 29/306 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +    +     D     F +  ++  + + +       + S  
Sbjct: 18  ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL           + K L   E  +   +    +II +  ++     L 
Sbjct: 71  FFADQKVVIFDNLLDITTAKRSCLDDKALKRFEVYLENPLDTTRLIIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L     +       +      + LL     D       +
Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFRKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L SY  +D  IT   +   I  T    I ++    + GKI  A  L            
Sbjct: 189 AFLKSYK-KDGHITADDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304
            L+   L +F++  ++ I+      + ++ +        + + P +        R  +  
Sbjct: 248 KLIAIMLGQFRMFLQVSILA-SQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306

Query: 305 LVRETL 310
            +++ L
Sbjct: 307 FLKKAL 312


>gi|58337147|ref|YP_193732.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus NCFM]
 gi|227903723|ref|ZP_04021528.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC
           4796]
 gi|58254464|gb|AAV42701.1| putative DNA polymerase III, delta subunit [Lactobacillus
           acidophilus NCFM]
 gi|227868610|gb|EEJ76031.1| DNA polymerase III, delta subunit [Lactobacillus acidophilus ATCC
           4796]
          Length = 329

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 124/310 (40%), Gaps = 36/310 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNEINSTSLFSKK 83
           + +G D  L   L+N + K       + F       ++ + + +     ++  +SLFS++
Sbjct: 19  LVWGEDDFLNDYLVNSYAK------EEQFKDYEHIVVDCESDGLDELIADLTESSLFSEQ 72

Query: 84  KIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSN--EIKKNNTLRKIA 131
           K+I+I+N         KK    L+++        ++ + +++I+++  +I +   L K  
Sbjct: 73  KLIVIKNPFFLTAKVPKKFSKQLDDLQKIFEKIADLED-VVVIEASYEKIDRRKKLTKTI 131

Query: 132 EKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            K  +V    I  Y      +  + +  +     +I++ A QIL+           +  Q
Sbjct: 132 MKQFNVFEPKIRPYE-----VGAMTKAIIKAEGYTITQSALQILVERSDQVMDTVLSNYQ 186

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           KL     E+  ITE+ V   +  +    I  I++A +      A    +  L        
Sbjct: 187 KLKM-AAENNKITEKSVIQNVDLSLAQNIFAILDAALNKNYQEATDRLNNQLREGATPIQ 245

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           LL  F  + +L+  + I+ +    S  +I+++    + P +  +  +     NK  + + 
Sbjct: 246 LLAVFENQLELILVVKILAQRQR-SESQIVKELG--VHPYRVKLAMK-----NKLAINKL 297

Query: 310 LHKIDHRIHL 319
              +D  I L
Sbjct: 298 EKLLDDAIKL 307


>gi|320333899|ref|YP_004170610.1| DNA polymerase III subunit delta [Deinococcus maricopensis DSM
           21211]
 gi|319755188|gb|ADV66945.1| DNA polymerase III, delta subunit [Deinococcus maricopensis DSM
           21211]
          Length = 300

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 96/303 (31%), Gaps = 17/303 (5%)

Query: 30  DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89
           +  L  E   +      + + D   +  ++  +++ +       +   SLF   +  ++ 
Sbjct: 8   NHFLAEERAREVLSARGVAWRD---VPRVSGDDVRTDA---LAPLLVPSLFG--EATVLV 59

Query: 90  NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
           +L   K   D L +++ +      ++    +     T  K+ EK     A    P     
Sbjct: 60  DLEGVKVTKD-LTDLLARADATVAVL----DPNGPATRVKLYEKHGEHHASPA-PTKPGE 113

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           +   +       +  + ++A   L      D      EL KL+   L+   +T   V  +
Sbjct: 114 VAGWVAGRARALRLKLDRDAAMYLAEVFSADLAGIVAELNKLAF--LDVPTLTRDVVTRV 171

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +          ++ A   G+   A       LAS      L+   + ++ L+ +   + +
Sbjct: 172 VGREAPGDSFAMLGAATAGRPGEAAGQLRRLLASGEDPFKLMGAVVWQYSLVARCVALLQ 231

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329
                 E              +  L+ + R  N+  +R  L +I       +  +     
Sbjct: 232 EGGAVNEHTAASRLGVKPYPAKKALEVA-RRLNEGKIRAHLRRIQDADQAMKSGQDPAST 290

Query: 330 IIF 332
           +  
Sbjct: 291 LER 293


>gi|293374087|ref|ZP_06620423.1| DNA polymerase III, delta subunit [Turicibacter sanguinis PC909]
 gi|325845733|ref|ZP_08169013.1| DNA polymerase III, delta subunit [Turicibacter sp. HGF1]
 gi|292647294|gb|EFF65268.1| DNA polymerase III, delta subunit [Turicibacter sanguinis PC909]
 gi|325488247|gb|EGC90676.1| DNA polymerase III, delta subunit [Turicibacter sp. HGF1]
          Length = 326

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 105/277 (37%), Gaps = 21/277 (7%)

Query: 53  FSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN-----LSTEKKVL----DCLEE 103
           F ++  +  E        ++ + + +  S +K IL++N         K  L    +    
Sbjct: 30  FDVISYDMKE-ATIQEALFD-LQTVAFLSNRKAILVKNPLFLTGKDSKGELNHDLEKFMA 87

Query: 104 IIIKNICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161
            +   I ++I+II +   ++ +   + K+ +K +       Y +    L+   ++ L   
Sbjct: 88  FLEHPISDNILIIYAPYDKLDERKKVVKLLKKQSEFFTFETYSET--TLIQWAQKKLKEE 145

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIICDTHVLYI 218
                  A ++L+            EL K+  Y L+D     ++   +  ++       I
Sbjct: 146 GIEFDPRAVELLVKFTHAKLDLMYQELDKIFLYFLDDATSKYLSVDLIHLLVPRQLEDNI 205

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
             + +A +Q K+ +A ++    L        +L     +F+L+ ++ I          ++
Sbjct: 206 FLLTDALMQQKVKDAYLIYQDLLTQNEEPFKILIMIANQFRLMSQV-IQLSRQGYREAEV 264

Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            +    N+ P +  ++      +  +L++  L+++  
Sbjct: 265 AKTL--NVHPYRVKLIHGQSHRFELDLIQSYLYQLAQ 299


>gi|257465444|ref|ZP_05629815.1| DNA polymerase III subunit delta [Actinobacillus minor 202]
 gi|257451104|gb|EEV25147.1| DNA polymerase III subunit delta [Actinobacillus minor 202]
          Length = 341

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 100/288 (34%), Gaps = 37/288 (12%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + N    +    S  LF  K+++++    S     +  L  +   +  + ++++   +  
Sbjct: 58  ETNWDALFESAQSMGLFFSKQMMILNLPESLNANQVKQLTTLCQLSHSDLLLVLCLPKFT 117

Query: 123 KNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           K    +    +    ++ ++C   +   L + +     +    I  EA Q+L  +  G+ 
Sbjct: 118 KAVEKQTWFTQIEAQLIQVNCQTPDVAKLPNWLAHRAKLMGLQIEPEAAQLLCYSYEGNL 177

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +A +  LQ L    ++   IT    K+I+  +      + ++A ++GKI  A  + ++  
Sbjct: 178 LALKQALQFLQLRFID-GKITLARAKEIVEQSAQFTPFQWVDALLEGKIGRAERILNYLK 236

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---- 297
              +    LL    ++  +L                 I +    +    + +L       
Sbjct: 237 NEDIQPVVLLRIIQKELFILL---------------EISRLPTPLHHYDQPLLTNQIRAE 281

Query: 298 ---LRIW--NKNLVRETLHKI----------DHRIHLARKKKYLEKNI 330
              L+IW   +    +   ++             +   + K+   + I
Sbjct: 282 FDRLKIWQNKRPFYVQACQRLTYRKLFTLIQQLAVLEKQIKQEFSEQI 329


>gi|288904872|ref|YP_003430094.1| DNA polymerase III subunit delta [Streptococcus gallolyticus UCN34]
 gi|288731598|emb|CBI13153.1| hypothetical DNA polymerase III subunit delta [Streptococcus
           gallolyticus UCN34]
          Length = 345

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 100/306 (32%), Gaps = 29/306 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +    +     D     F +  ++  + + +       + S  
Sbjct: 18  ITVVTGEDLGQFSQLKERMMARVGYDKDDLTYSYFDMAEVDYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL           + K L   E  +   +    +II +  ++     L 
Sbjct: 71  FFADQKVVIFDNLLDITTAKKSYLDDKALKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L    ++       +      + LL     D       +
Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLTFDSGVFEALLLKSNYDFSEILKNI 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L SY  +D  IT   +   I  T    I ++    + GKI  A  L            
Sbjct: 189 AFLKSYK-KDGHITTDDINQAIPKTLQDNIFDLTQFVLNGKIDEARELIRDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304
            L+   L +F++  ++  +      + ++ +        + + P +        R  +  
Sbjct: 248 KLIAIMLGQFRMFLQV-SVLASQGKNEQQTVTALSDYLGRRVNPYQVKFALRDSRTLSMP 306

Query: 305 LVRETL 310
            +++ L
Sbjct: 307 FLKKAL 312


>gi|294791900|ref|ZP_06757048.1| putative DNA polymerase III, delta subunit [Veillonella sp. 6_1_27]
 gi|294457130|gb|EFG25492.1| putative DNA polymerase III, delta subunit [Veillonella sp. 6_1_27]
          Length = 330

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 109/321 (33%), Gaps = 42/321 (13%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 11  LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EVGPQKISEKLCEDSLFGDQK 62

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK-IAEKFTS 136
           +       +I            L E+++K   ++ I++  +++  K     K I EK  +
Sbjct: 63  VFCLVNLPIIRKSGKNSDAWVPLYELLLKYNGDNPIVLIYHDMIDKRIKQNKEILEKIPN 122

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLS 192
                C       L+  I +        ++ +A++ +     L  +   S  R E  +  
Sbjct: 123 H---QCKRLEGEDLVMWIRQYCTSNGFKMTPDAQEYVAHLIDLWQEVPVSFMRTEFDRYF 179

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHAL 250
                + +IT++ +++   D     I     A ++  I   + L  F    K    + + 
Sbjct: 180 LQITGERVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSY 239

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWN 302
           + G L+    L+ +        +S + I           +   I    +   + S RI +
Sbjct: 240 IEGQLR----LQLLVSECRQVGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-S 290

Query: 303 KNLVRETLHKIDHRIHLARKK 323
              +R  L  +   I  +R  
Sbjct: 291 IKALRALLKGLYEIILDSRSS 311


>gi|238060580|ref|ZP_04605289.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149]
 gi|237882391|gb|EEP71219.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149]
          Length = 326

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 8/240 (3%)

Query: 73  EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           E+ S SLF  ++++++       K ++  L            +++      K        
Sbjct: 58  EMLSPSLFGGRRVLVLRAGQDARKDLVAALLAYAKNPDPEVHLVVLHLGAAKGKAFADGL 117

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
               + +  +         +  + + +       + +A + L+A +G D         +L
Sbjct: 118 RAAGATVVPAAKLKGHRERVAFVRDEVRRVGGKCTDDAAEALIAAVGTDLRELAAACSQL 177

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                 D  I    V         +    + +AT+ G +  A+    + L   +    + 
Sbjct: 178 V--ADTDGRIDADTVARYYKGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVPIA 235

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                    +  +  +         ++            ++  Q + R W    +   + 
Sbjct: 236 DALA---DGVRTVARVAAAGRGDPYQLASTLGMPA-WKIKSAQQRA-RGWTPEGLVRAMR 290


>gi|269798020|ref|YP_003311920.1| DNA polymerase III delta [Veillonella parvula DSM 2008]
 gi|269094649|gb|ACZ24640.1| DNA polymerase III delta [Veillonella parvula DSM 2008]
          Length = 325

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 38/319 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 6   LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           +       +I            L E+I++   ++ I++  + +  +  +++  E    + 
Sbjct: 58  VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGDNPIVLIYHNM-IDKRIKQNKELLNKIS 116

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194
              C       L+  I +        ++ +A++ +     L  D   S  + E  +    
Sbjct: 117 NRECKRLEGADLVMWIRQYCTFNGFKMTPDAQEYVAHLIDLWQDVPVSFMKTEFDRYFLQ 176

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252
              D +IT++ +++   D     I     A ++  I   + L  F    K    + + + 
Sbjct: 177 ITGDKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLELFPFMFGYKELDRAMSYIE 236

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304
           G L+    L+ +      + +S + I           +   I    +   + S RI +  
Sbjct: 237 GQLR----LQLLVSECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASPRI-SVK 287

Query: 305 LVRETLHKIDHRIHLARKK 323
            +R  L  +   I  +R  
Sbjct: 288 ALRALLKGLYEIILDSRSS 306


>gi|46191298|ref|ZP_00120473.2| COG1466: DNA polymerase III, delta subunit [Bifidobacterium longum
           DJO10A]
          Length = 312

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 98/303 (32%), Gaps = 19/303 (6%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87
           G D  L                 D   L+ L+A    +     ++E  S SL S   ++ 
Sbjct: 4   GGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLSDVAVVK 59

Query: 88  IENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAIS 141
           + NL   ++K+ + L        K+     ++I      +K    + ++ +       + 
Sbjct: 60  LVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVP 119

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L  ++ E      + +   A Q L++ LGG         ++L  +  +D  +
Sbjct: 120 DLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPM 177

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V   +     +    + +  ++GK   AI++    +       AL+          
Sbjct: 178 GLDCVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------ 231

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            K+  I + S +    I Q   K    + +N +   L  W    +   +  +      ++
Sbjct: 232 MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSK 290

Query: 322 KKK 324
              
Sbjct: 291 TNG 293


>gi|291516781|emb|CBK70397.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp.
           longum F8]
          Length = 323

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   ++K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 65  DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  +  E      + +   A Q L++ LGG         ++L  + 
Sbjct: 125 RKEDVPDLKKPDAQLNFVFGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|240949287|ref|ZP_04753630.1| DNA polymerase III subunit delta [Actinobacillus minor NM305]
 gi|240296238|gb|EER46887.1| DNA polymerase III subunit delta [Actinobacillus minor NM305]
          Length = 341

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 101/288 (35%), Gaps = 37/288 (12%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           + N  T +    S  LF  K+++L+    S     +  L  +   +  + +++    +  
Sbjct: 58  ETNWDTLFEAAQSMGLFFSKQMMLLNLPESLNANQVKQLATLCRLSHSDLLLVFCLPKFT 117

Query: 123 KNNTLRKIA-EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           K    ++   +  T ++ ++C   +   L + +     +    I  EA Q+L  +  G+ 
Sbjct: 118 KAVEKQEWFTQIETQLIQVNCQTPDVAKLPNWLAHRAKLMGLQIEPEAAQLLCYSYEGNL 177

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +A +  LQ L      D  IT    K+I+  +      + ++A ++GKI  A  + ++  
Sbjct: 178 LALKQALQFLQLR-FTDGKITLTRAKEIVEQSAQFTPFQWVDALLEGKIGRAERILNYLK 236

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---- 297
              +    LL    ++  +L                 I +    +    + +L       
Sbjct: 237 NEDVQPVVLLRIIQKELFILL---------------EISRLPTPLYHYDQPLLTNQIRAE 281

Query: 298 ---LRIW--NKNLVRETLHKI----------DHRIHLARKKKYLEKNI 330
              L+IW   +    +   ++             +   + K+   + I
Sbjct: 282 FDRLKIWQNKRPFYVQACQRLTYQKLFILIQQLAVLEKQLKQEFSEQI 329


>gi|319440881|ref|ZP_07990037.1| DNA polymerase III, delta subunit [Corynebacterium variabile DSM
           44702]
          Length = 317

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 20/242 (8%)

Query: 23  VFIFYGSDKGLIFELINQF---KKNISITYHDP---FSLVVLNALEIQKNISTFWNEINS 76
           +++  G D  L            +  +     P     +  ++A E+         E+ S
Sbjct: 1   MYLIVGGDDFLAERRRTAIVEEARRSAGNPDLPVEMRKVSEIDAGELA--------ELLS 52

Query: 77  TSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
            SLF++ +++ +  L+   K     +E  +       ++I++ +   +   L     K  
Sbjct: 53  PSLFAEDRVVAVTGLAEASKDTAGLIEAAVADPAPGVVLILQHSGKGRQKALVTSLPKKA 112

Query: 136 SVLAISCYPDN---KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              A+                I+         +S +  + LL  +G D     + + +L 
Sbjct: 113 PTGALQVLSAEELKGRERAGFIDAEFRDAGVRVSPDVTEALLDAVGTDLRELASAVSQLV 172

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           S       +T   V      +  +   ++    + G+   A+  A   L   +P   L  
Sbjct: 173 SDTGGK--VTAAAVHRYYQGSAEVSGFDVAEYAVSGRTDQAVGAARRALQLGVPHVLLAS 230

Query: 253 GF 254
             
Sbjct: 231 AL 232


>gi|206890034|ref|YP_002249029.1| DNA polymerase III, delta subunit superfamily [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741972|gb|ACI21029.1| DNA polymerase III, delta subunit superfamily [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 283

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 42/252 (16%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           L   ++  Y  D  L+FE+    +KN      DP  +    + E + +I++F     S S
Sbjct: 15  LPKRMYFCYAQDTFLLFEVTRLVRKNF-----DPVVIETYESPE-ELDITSFA----SPS 64

Query: 79  LFSKKKIILIENLSTEKKV---LDCLEEIIIKNICNHIIII-----------KSNEIKKN 124
           LFS K ++LI N    KK    ++ L++I  +   +  +I+           +   +KK+
Sbjct: 65  LFSSKTVLLIYNFEKIKKTEKRIEWLKKITSQVHSSISLILLCNASYKEISDEIAYLKKD 124

Query: 125 --NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             + L  +  K             K  L   I         ++ ++A   L+   GG   
Sbjct: 125 KNSLLYNLDLK-------------KEDLPTWIAYKASQNGITLKQDAIYYLIDITGGQPG 171

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
              +E++K+S    +   I    +KDI+ +       ++I+A  +     A  L D    
Sbjct: 172 LISSEIEKISLLT-DKSHIGLFDIKDILTELGEFTAFDLIDAIKKKDKERAYRLIDKL-- 228

Query: 243 SKMPSHALLHGF 254
                  +L   
Sbjct: 229 QNTEPDMILGAL 240


>gi|330863390|emb|CBX73512.1| hypothetical protein YEW_KX46530 [Yersinia enterocolitica W22703]
          Length = 160

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 7/142 (4%)

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           ++LS     D  +T   V+  + D         ++A + GK   A  +            
Sbjct: 2   ERLSL-LYPDGKLTLPKVEQAVNDAAHFTPYHWLDALLAGKSKRAWHILQQLQQEDSEPV 60

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            LL    ++   L  +    E   +    +  + +  +   +R ++ ++L+  +   +++
Sbjct: 61  ILLRTLQRELLQLLTLKRRME--QVPLRTLFDQFK--VWQNRRPMMTQALQRLSMPQLQQ 116

Query: 309 TLHKIDHRIHLARKKKYLEKNI 330
            +  +       R K+   ++I
Sbjct: 117 AVRLLSQI--EVRLKQDYGQSI 136


>gi|325963355|ref|YP_004241261.1| DNA polymerase III subunit delta [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469442|gb|ADX73127.1| DNA polymerase III, delta subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 338

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 96/304 (31%), Gaps = 21/304 (6%)

Query: 23  VFIFYGSDKGL---IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           V +  G ++ L     + I    +  +        L   +A   +    T   ++ S SL
Sbjct: 27  VVLVTGPEEYLGIRAMDRIRAQVRAAAPDV----ELSRFSAAAYEA--GTLLMQV-SPSL 79

Query: 80  FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSV 137
           F + K+I +E + +     L      +     + +++++ +  ++    L  + +    V
Sbjct: 80  FGESKLIEVEAVEAMNDAFLADALGYLGHPEQDAVLVLRHAGGVRGKKLLDAVKKGGWPV 139

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +       +   +  ++      G + I ++A Q L+  +G +         +L      
Sbjct: 140 VDCQPLKKDADKVAFVM-AEFKAGGRRIEQDAVQALVNAVGANLSELAAACSQLI--ADA 196

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +T + V             ++ +A + G    A+      LA+      L+      
Sbjct: 197 GTTVTAEIVDRYYGGRIEATAFKVADAAMAGNAPLALSTLRHALATGADPVPLVAALAA- 255

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
                K+  +   +  S        E  + P      Q  +R W    +  ++       
Sbjct: 256 -----KLRTVARVAGASGSSAHIAAELGMQPWLVEQAQRDVRRWTPEGLVRSIQATAEAD 310

Query: 318 HLAR 321
              +
Sbjct: 311 AQVK 314


>gi|205374274|ref|ZP_03227073.1| DNA polymerase III subunit delta [Bacillus coahuilensis m4-4]
          Length = 220

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 3/194 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
            +  L   +   + I   SI + A  +LL   G +     NE+ KL+ Y    + IT + 
Sbjct: 30  TEQELKKWVAYEVKILGVSIEEAALDLLLTLTGTNLQVVANEVNKLALYGGHQVSITTEM 89

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V  ++  +    I  +++  I   I  A+ +    L        +L     +F+L+ ++ 
Sbjct: 90  VDKLVARSIEQNIFILVDKVISRDIGGAVQIYYDLLKQNEEPIKILAILAGQFRLIYQVK 149

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
                     + I    +  +   +  +     R +    +++ +  +    +  +  K 
Sbjct: 150 -QLTSKGYGQQSIGSTLK--VHSYRVKLAAGQARAFTFEQLQKIMLLLAEGDYEMKTGKR 206

Query: 326 LEKNIIFQTILYIA 339
            +K I+   IL +A
Sbjct: 207 DKKLIVEMFILKLA 220


>gi|322387554|ref|ZP_08061163.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           infantis ATCC 700779]
 gi|321141421|gb|EFX36917.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           infantis ATCC 700779]
          Length = 345

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 106/272 (38%), Gaps = 23/272 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    +  Q  K I     D  +    +  E+  + ++   E+ S   F+ +K
Sbjct: 20  LFTGADQGQYDIMKTQVLKQIGYDPAD-LNFAYFDMKEV--DYNSLELELVSLPFFADEK 76

Query: 85  IILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I++++   +++T KK       L   E+ +   + +  ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFIDITTAKKRYLTDDELKAFEDYLENPVPSSKLVIFAEGKLDSKRRLVKLLKRD 136

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                       +  L    ++       +    + + LL           +E+QK   +
Sbjct: 137 --ATVFEALEPKEQELRAYFQKWTQEQGLTFGGNSFEQLLIKSS----FQFSEIQKNLLF 190

Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            L   +  LITE+ + + I  T    I ++    +  KI  A  L             L+
Sbjct: 191 LLSYKDSGLITEEDIVEAIPKTLQDNIFDLTQLILTKKIDQARDLVKDLTLQGEDEIKLI 250

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
              L +F+L  ++ I++E S  +  +++    
Sbjct: 251 AIMLGQFRLYTQVKILQE-SGQTESQMVSSLG 281


>gi|33241256|ref|NP_876198.1| DNA polymerase III subunit delta [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238786|gb|AAQ00851.1| DNA polymerase III delta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 338

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 110/334 (32%), Gaps = 42/334 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D G I   I +F K          +L  L+     +       E+ +    +
Sbjct: 2   PIHLIWGDDFGAIDRSIEKFIKKAIDPNWISINLSRLDGQNASEAHKCL-EEVRTPPFGN 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIK-----NICNHIIIIKS----NEIKKNNTLRKIAE 132
             +I++++         + L               H+I++        +K    L  +  
Sbjct: 61  GHRIVIVKKSPFCNGCSNELSNHFESIINLIPEQTHLILVNQNKPDGRLKTTKLLNNLI- 119

Query: 133 KFTSVL----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD--RIAS-- 184
           K          +    D       L+E +       ++++A   L+  LG D  RIA   
Sbjct: 120 KSKKAFEQRFILPPAWDGLGQ-KKLVERTAEEMNIELTEDAILTLVEALGSDSQRIAIEL 178

Query: 185 ------------RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
                       + E +K+         I+++ V D+I       ++ I    ++     
Sbjct: 179 EKLVLLEEAKTNQKEGEKII--------ISQESVNDLIHSISSNSLQ-ICEFLLKSNFGK 229

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           AI   D+ L    P+  +L     + +    + ++ +  N     I ++      P +  
Sbjct: 230 AIEKIDYLLNEGEPALRILATMTSQIRGWLWVSLLDQGENKEVSSIAKQAGIA-NPKRIY 288

Query: 293 ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           ++++ ++  +     E L +I     L +K    
Sbjct: 289 VIRKQIQGKSPMFFIELLSRILEIEALLKKGALP 322


>gi|320528381|ref|ZP_08029543.1| DNA polymerase III, delta subunit [Solobacterium moorei F0204]
 gi|320131295|gb|EFW23863.1| DNA polymerase III, delta subunit [Solobacterium moorei F0204]
          Length = 334

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 88/277 (31%), Gaps = 39/277 (14%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN---STSL 79
           V++  G D     E +    K  SI         V            F   +    + SL
Sbjct: 3   VYLLSGKDMFRQEERLATLLKEFSIEKE-----YVTTFDASNAKTFRFDEALMACDTFSL 57

Query: 80  FSK--KKIILIENLSTEKKV------------------LDCLEEIIIKNICNHIIII--- 116
           F    KK ++I+     + V                  L  LE  +     N +++    
Sbjct: 58  FDDSAKKAVIIKEPHFLRAVAKTSKKETEKQETEKEQRLKSLEAYLKNPNPNTLLVFYCH 117

Query: 117 --KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
              ++  KK   L    +    V  I             ++  L   +  ++++AK  LL
Sbjct: 118 TFSADTRKKEYKLLTNYD----VRVIKFELMKPWEFEKYVDNQLKENKYKLTRDAKTELL 173

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
             +  D +   N L K+  Y      +  + +  I+     L I  + NA +   + + +
Sbjct: 174 ERVSNDTLKFHNALVKIDLY--GKKELNLEDIMHIVPVNADLNIFRMSNAFVAHDLSSTL 231

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           +  D  L ++     ++     K + L  I  + E  
Sbjct: 232 LAIDEMLQARYDYVVMIAMLASKLRSLYNIKKLYERG 268


>gi|242310274|ref|ZP_04809429.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT
           98-5489]
 gi|239523571|gb|EEQ63437.1| DNA polymerase III subunit delta [Helicobacter pullorum MIT
           98-5489]
          Length = 353

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 34/333 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISIT--YHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
              + YG D  LI    ++  + I       + F     +               +  SL
Sbjct: 36  RAILLYGEDSFLIGYYGDKIAQKILAKGCEKNSFYFGEFDFEAALSC-------FSQGSL 88

Query: 80  FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---------TLRK 129
           F  + ++ I+ +    KK LD L E I KN     +I++  + +  +          L  
Sbjct: 89  FGDEALVWIKVDKKIPKKQLDSLIEAIEKNQSG-YLILEFYQAENKSVSEYGLDCKALAG 147

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
              +  ++  +  +  N+   M ++ E        IS  A + +L     D   S  EL+
Sbjct: 148 SF-RGKNIYEVRFFFANQGEAMAILREYANALCIKISDYALKKILEQQNYDLGLSVAELR 206

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           K   Y + D  I  + ++ +     +  +E      +           D FL        
Sbjct: 207 K---YSIFDEEINVESIESL--GYGLGSVEYEEILELLLDKKPFFKELDRFLEQGFEEVQ 261

Query: 250 LLHGFLQKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           L+    + F  L      I+   N S E+I+      II  K+     +++I  +   ++
Sbjct: 262 LIAEVQRYFFQLFLFSSHIRIYGNASSEEILGYKLPPIILEKKRK--RAIQINTQERFQK 319

Query: 309 TLHKID----HRIH-LARKKKYLEKNIIFQTIL 336
             + ++      I    +   +    I  Q IL
Sbjct: 320 IFYVLNKWREEAIKGNTKGNGFFSALIKIQAIL 352


>gi|224418789|ref|ZP_03656795.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT
           98-5491]
 gi|253826688|ref|ZP_04869573.1| DNA polymerase III holoenzyme delta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142306|ref|ZP_07804499.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT
           98-5491]
 gi|253510094|gb|EES88753.1| DNA polymerase III holoenzyme delta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131337|gb|EFR48954.1| DNA polymerase III subunit delta [Helicobacter canadensis MIT
           98-5491]
          Length = 333

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 111/337 (32%), Gaps = 59/337 (17%)

Query: 22  FVFIFYGSDKGLI----FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
              + YG D  L+     ++  +  K         FS       +    I+ F       
Sbjct: 17  RAILLYGEDSFLVGYYGEKIAQEILKKDCEKNSFYFS-----EFDFNSAIACFSQG---- 67

Query: 78  SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           SLF  + ++ I+ +    KK LD L   + KN  +  +I++  + +  +     AE    
Sbjct: 68  SLFGGESLVWIKADKKIPKKQLDSLIAALEKN-GSGYLILEFYQAENKSA----AEYSLD 122

Query: 137 VLAIS------------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             A++             +  N      ++ E        IS  + + +L     D   S
Sbjct: 123 CKALAGSFKGKNIYEARFFSLNAGESFGILREYANGFGLKISDFSLRKILEQQNYDLGLS 182

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
             EL+K   Y + D  I  ++++++      +  EEI+           + L + FL   
Sbjct: 183 VAELRK---YTIFDSEINAENIENLGYSLGSIEYEEILELMF--DRKPYLNLLEKFLEQG 237

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-------LQES 297
                L+    + F  L       +    +  + +   +  +  +++          ++ 
Sbjct: 238 FEEIPLIAEIQKYFFQLFLFSSHIKLYGNATSEEVLGYKLPVNLLEKKKRRAIQIGQEKF 297

Query: 298 LR------IWNKNLVR---------ETLHKIDHRIHL 319
           L+       W+++ +R           L KI   I  
Sbjct: 298 LKIFCVLNRWHEDSIRGITKGNGFLRALIKIQ-AILE 333


>gi|300933234|ref|ZP_07148490.1| DNA polymerase III, delta subunit [Corynebacterium resistens DSM
           45100]
          Length = 329

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 107/336 (31%), Gaps = 17/336 (5%)

Query: 16  NLFLSHFVFIFYGSDKGLIFEL---INQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
                  V +  G D+ L       I    +  S     P  +   + L   + +     
Sbjct: 6   KPQPPAPVNLIVGEDEFLAERRRKEIALHARRASGNADLPVEMHRASELSEPELLELLSP 65

Query: 73  EINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            +     F++ +II I  +    K V++ +E  I +     ++I+      +N  L +  
Sbjct: 66  SL-----FAEDRIIYISEVEDKGKDVVELIEGAIRQPAPGIVLIVWHKGKGRNKKLVQSW 120

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            K  +V+  +  P     ++  I+         +S +    L   +G D     + + +L
Sbjct: 121 PKLGAVVHEAA-PLKGRAILSFIDSEFRNHGVRVSGDVTNALHDAVGSDLRELASAVSQL 179

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                 D  +T   V         +   ++ +  + G + NA+ +A   +       AL 
Sbjct: 180 V--ADTDGQVTADTVHTYYVGRAEVSGFDVADLAVTGYVTNAVAMARRAMQVGTKPIALA 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                    +  I  +     I   +  +    +        ++ + R W    + E + 
Sbjct: 238 TAL---GMGVTGIAKVAGAGRIDARRDSRAFGMS-PWQLEKTMRNA-RNWTPATIAEAVQ 292

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
            +       +     E+  + + +  IA+ A K   
Sbjct: 293 VVADLDGATKGSALDEEYAVEEAVRRIAELAAKGAR 328


>gi|256752146|ref|ZP_05493012.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748960|gb|EEU61998.1| DNA polymerase III, delta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 310

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 102/288 (35%), Gaps = 22/288 (7%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94
            + I +FK  I        + +V+   + ++ +        +   FS+ K+++++N   +
Sbjct: 2   SDAIKRFKSKILKEETYEMNYIVIEKNDPEEYVDAIIESCETLPFFSEYKLVVVKNEEDQ 61

Query: 95  ---------KKVLDCLEEIIIKNICNHIIIIKSN---EIKKNNTLRKIAEKFTSVLAISC 142
                    KK+++ +EE         ++II      +++K     K  EK   ++    
Sbjct: 62  LSKLSDKSLKKLVNYMEERANMAENKTVLIIVDGEKVDLRK--KFYKFIEKTGKIVYFQK 119

Query: 143 YP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
              +  ++      +           E     + ++G D  A  NE+ K+  Y  +   I
Sbjct: 120 LSFEEAVNYTGYFFKKSGKKISKSDAE---YFVKSVGTDLYAIVNEIHKVVCYS-DSEEI 175

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             + +K+++       I  +++A    K   A  +    L        +L   +++ +L+
Sbjct: 176 KMEKMKEVLTINLQQNIFNLVSAIGMKKEKEAYKVLYALLEKGEVPLIILSMIVRQMRLI 235

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            KI    E   +  + I          ++   L    + + K  +   
Sbjct: 236 AKIKT-FESKFVDKKSIASSLGVPYFVVEE--LTRQSKFFKKEDLERA 280


>gi|313678461|ref|YP_004056201.1| DNA polymerase III subunit delta [Mycoplasma bovis PG45]
 gi|312950149|gb|ADR24744.1| DNA polymerase III, delta subunit [Mycoplasma bovis PG45]
          Length = 320

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 124/331 (37%), Gaps = 33/331 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +   YG +K LI + + + +K  +    + F        + Q +I+   +  +S +LF+ 
Sbjct: 1   MIFIYGPEKFLIEQEVQRIRKEHNDKVLEIFRF------DDQASINDLISSASSNNLFTG 54

Query: 83  KKIILIENLS--------TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-----NTLRK 129
            K+ LI  L          + K  D L   I  N  +  + I  N I K+     +  + 
Sbjct: 55  SKLFLIYALPFFDKSILKDDLKNADDLINAINVNNQDIFVFINENIISKDKISVNSWTKF 114

Query: 130 IAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           I E     +  I     ++  L  L +      +  I  EA ++L+  +  D +    E+
Sbjct: 115 IFENNNHEVTMIEAKEISESKLFSLAKSLANKHKLHIDDEAIKLLINKVNNDTLMLSAEI 174

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KLS+    +  I+ + +++         +    NA     +          +       
Sbjct: 175 IKLSNL---EKHISAEVIENSTDTMLGDDVFAFSNALETNDLGIIWSKYKEKMLEGTEIS 231

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           AL+    Q F +  +I+  K C  +S +++ +  +  +   +   +   L     N +++
Sbjct: 232 ALIGQISQIFIIAHQIYAYKVCH-LSIDQLSRDLK--LNSYRIKKISYFLSKIGINKIKK 288

Query: 309 ---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336
              +L K+D  I    K   + + I F+  L
Sbjct: 289 MILSLSKLDKDI----KNGLISEKIGFERFL 315


>gi|213691903|ref|YP_002322489.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523364|gb|ACJ52111.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458003|dbj|BAJ68624.1| DNA polymerase III delta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 323

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNDARTKALCAQALKARPDA-DLIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   + K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 65  DVAVVKLVNLQNADDKLAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  ++ E      +     A Q L++ LGG         ++L  + 
Sbjct: 125 RKEDVPDLKKPDAQLNFVLGE-FEKRGRRAEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|78188207|ref|YP_378545.1| DNA polymerase III, delta subunit [Chlorobium chlorochromatii CaD3]
 gi|78170406|gb|ABB27502.1| DNA polymerase III, delta subunit [Chlorobium chlorochromatii CaD3]
          Length = 346

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 102/323 (31%), Gaps = 32/323 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVL---NALEIQKNISTFWNEINSTS 78
            ++ F GS+  L  E     +  +  +  D  +   L   + + +++      +  +   
Sbjct: 15  PIYFFTGSESYLKEEFATLIQGALFASEEDAVANTHLLHGHDMTLRE----LLSRASEYP 70

Query: 79  LFSKKKIILIEN---------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
           +F++++++++ +            +K+        +       ++++ ++E+ K++    
Sbjct: 71  MFTERQLLVVRHFEKIKKPTTKEQQKQQYAAFGNYLANPATFTVLLLDADELDKSD---- 126

Query: 130 IAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
             EK    L  S   D     H      E           +A +   A +         E
Sbjct: 127 -FEKQPFSLLKSVRHDFPAIKHPDLFASERAAQAGWEFEPDALKAFAAYIDPSSREICQE 185

Query: 188 LQKLSSYCLED---ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           L K+  Y  E      IT   V D +  +    + E+  A +   +     ++   +  +
Sbjct: 186 LDKIILYASERQSAKRITAADVLDCVGVSRTYNVFELEKALVARNLRLCSGMSLMIMDQE 245

Query: 245 MPS---HALLHGFLQKFQLLEKIHI-IKECSNISFEKIIQKTEKNIIPMKRNIL--QESL 298
                  A++      +  L KI +   +    S    +         + ++ L      
Sbjct: 246 GQKEGLMAIVRYLTTFYMRLWKISMPEVQRMAQSDIAKVLGMSPRQEFLIKSYLTYTRQF 305

Query: 299 RIWNKNLVRETLHKIDHRIHLAR 321
            +         L  +D  +   R
Sbjct: 306 SLQQTEAALCALRDVDASLKGLR 328


>gi|313674444|ref|YP_004052440.1| DNA polymerase iii, delta subunit [Marivirga tractuosa DSM 4126]
 gi|312941142|gb|ADR20332.1| DNA polymerase III, delta subunit [Marivirga tractuosa DSM 4126]
          Length = 340

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 103/279 (36%), Gaps = 17/279 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+  +G +   I  + +  +KN        F+  +L   +++ +     +   S  +  
Sbjct: 19  PVYFLHGEEPYFIDLISDFIEKNALDESEKGFNQQLLYGKDVRLD--QVVSASRSFPMMG 76

Query: 82  KKKIILIENLSTEKKVLDC------LEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEK 133
           ++++I+++      +           E  +     + +++   K  ++ K   + K  E 
Sbjct: 77  QRQVIIVKEAQNLGEFTQSDFDFSMFENYLKSPQPSTVLVFCYKHKKLDKRKKIVKTLE- 135

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               + +      +  + D I+  +     SI+++A  +L   +G +     NE+ K+  
Sbjct: 136 -QFSVLLESNKIYENKVPDWIQNYVKSKGHSINRQALLLLTEYIGNNLERLSNEIDKVLV 194

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
              + + I E  +++ +       I E+ +A I+G    A  + ++F +      A+++ 
Sbjct: 195 NFSDPVEINEGLIQEYVGINKDFNIFELQSAIIKGDALRANRIINYFASDPKNHPAVVNI 254

Query: 254 FLQK--FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
                 F  +  IH   +    S   +      N    K
Sbjct: 255 AFLHAFFAKVLLIHHSPD---KSERGVASAAGVNPFFAK 290


>gi|304438298|ref|ZP_07398239.1| DNA-directed DNA polymerase III delta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368664|gb|EFM22348.1| DNA-directed DNA polymerase III delta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 347

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 27/291 (9%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           +H+F+    +       +++  G +   I        + +        +  ++   E+  
Sbjct: 3   AHEFMASLAQGTPPQ--IYLLAGEEPYYIRRAEEAILRRLLPDAA-ERADALIRYEEMPA 59

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH------------- 112
            I      + +   F+ K ++L+ + +  +      E                       
Sbjct: 60  -IDALAESLETAPFFTDKIVVLVHDAAVFRAGKKAAEGDTPAPKDAAAERLLALLTNLLP 118

Query: 113 --IIIIKSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
              ++   N    K   L +  +K   +  +        ++   + E L    +S+ +EA
Sbjct: 119 TTYVVFTLNAKPDKRRKLYQTVQKAGRI--LESEAVRPWNVEGWLNERLREMGRSMQREA 176

Query: 170 KQILLANLGGDRIASR----NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
           +   L  +G  +  S      +L+KL+ Y  ++   TE  ++    +   + +  +++A 
Sbjct: 177 RTFFLNVVGMMQTISLEFLDRQLEKLTLYT-DNKQFTEADLRAAFSEMPEVSVFALMDAI 235

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
               +  A+ L     A  +    LL    +  + L +   +         
Sbjct: 236 SARDVRRAMDLLARCRADGVHFTVLLALLTRHVRHLWQARRLLASGTPPKG 286


>gi|296454272|ref|YP_003661415.1| DNA polymerase III subunit delta [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183703|gb|ADH00585.1| DNA polymerase III, delta subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 323

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 19/303 (6%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87
           G D  L                 D   L+ L+A    +     ++E  S SL S   ++ 
Sbjct: 15  GGDSYLNDARTKALCAQALKARPDA-DLIELDATSADQYA---FDEAVSPSLLSDVAVVK 70

Query: 88  IENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAIS 141
           + NL   + K+ + L        K+     ++I      +K    + ++ +       + 
Sbjct: 71  LVNLQNADDKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVP 130

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   L  ++ E      + +   A Q L++ LGG         ++L  +  +D  +
Sbjct: 131 DLKKPDAQLNFVLGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPM 188

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V   +     +    + +  ++GK   AI++    +       AL+          
Sbjct: 189 GLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------ 242

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            K+  I + S +    I Q   K    + +N +   L  W    +   +  +      ++
Sbjct: 243 MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSK 301

Query: 322 KKK 324
              
Sbjct: 302 TNG 304


>gi|296119908|ref|ZP_06838462.1| DNA polymerase III, delta subunit [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967062|gb|EFG80333.1| DNA polymerase III, delta subunit [Corynebacterium ammoniagenes DSM
           20306]
          Length = 324

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 95/297 (31%), Gaps = 23/297 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D+ L        +K ++    D   L VL A E+ +       E  S SLF 
Sbjct: 7   PVHLILGDDEFLAERARKSIQKAVAEETGDQPELKVLRAAEVTEWE---ILEATSPSLFG 63

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEKFTS 136
           + ++I+I +       ++  + +          +++        +K      ++  K   
Sbjct: 64  ETRVIVISDTERVGSALIKLIVDAAKDPAPGMTMVVNFAISRKNLKNRKKPPELVAKIQK 123

Query: 137 VL----AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +       + Y +    +               + +    LL+ +G D  +    + +L 
Sbjct: 124 LAQVHEVFALYDNE---VKPWATREFASHGIRPTPDVVDALLSGVGSDLRSLAAAISQLV 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +    D  +T Q V+        +   +I +A + G++  A+      L        +  
Sbjct: 181 ADTGGD--VTRQTVQRYYAGVAEVENWDIADAAVAGRVGEAVATCRRALQLGAEPVGIAA 238

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
               K  ++ +++  +       ++        +      I     R W+   + + 
Sbjct: 239 ALANKVGVIARLYTARGDKFSLAKQ--SGLHPYVAEKTAPIA----RRWSGENISKA 289


>gi|312132630|ref|YP_003999969.1| hola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773579|gb|ADQ03067.1| HolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 323

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 19/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L                 D   L+ L+A    +     ++E  S SL S
Sbjct: 9   PVTVVPGGDSYLNDARTKALCAQALKARPD-AELIELDATSADQYA---FDEAVSPSLLS 64

Query: 82  KKKIILIENLST-EKKVLDCLEEI---IIKNICNHIIII--KSNEIKKNNTLRKIAEKFT 135
              ++ + NL   ++K+ + L        K+     ++I      +K    + ++ +   
Sbjct: 65  DVAVVKLVNLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGA 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               +         L  +  E      + +   A Q L++ LGG         ++L  + 
Sbjct: 125 RKEDVPDLKKPDAQLNFVFGE-FEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FD 182

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            +D  +    V   +     +    + +  ++GK   AI++    +       AL+    
Sbjct: 183 FDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALD 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  K+  I + S +    I Q   K    + +N +   L  W    +   +  +  
Sbjct: 243 ------MKLRTIAKASAVRAGTISQAEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAW 295

Query: 316 RIHLARKKK 324
               ++   
Sbjct: 296 ADEQSKTNG 304


>gi|295425150|ref|ZP_06817855.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065209|gb|EFG56112.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 328

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 128/319 (40%), Gaps = 34/319 (10%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN   ++   + +G D  L   L   + K       + F+ +    ++ + + +      
Sbjct: 8   KNTNNNNPHTLIWGDDDFLNDYLARSYVK------DERFASLDHVIVDCENDGLDELIAA 61

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEII-----IKNICNHIIIIKSNE-IK 122
           +  +SLFS +KII ++          KK    L+++      +K + + ++I+ S E I 
Sbjct: 62  LTESSLFSNQKIITVKQPFFLTTKVAKKYQKQLKQLQDIFSHLKELEDVVVIVASYEKID 121

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K      +V+   +  Y      +  + +  +     +IS+ A QIL+      
Sbjct: 122 RRKKLTKTIMGSFNVVEPLVRPYE-----VAAIAKALIKAEGYTISQSALQILVERSDQV 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                +  +KL   C++   ITE+ VK  +  +    I  I+ A +      AI+  +  
Sbjct: 177 MDTILSNYEKLKMACVDKK-ITEEAVKTNVDLSLAQNIFAILEAALNHNYQEAIIRLNDQ 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L     +  LL  F  + +LL  + I+      S  +I+++    + P +  +   +LR 
Sbjct: 236 LREGTNAIQLLAVFENQIELLLVVKILA-KRGRSEPQIVKELG--VHPYRVKL---ALR- 288

Query: 301 WNKNLVRETLHKIDHRIHL 319
            ++  + +  + +   I L
Sbjct: 289 -SRIQINKLENLLAEAIKL 306


>gi|312863639|ref|ZP_07723877.1| DNA polymerase III, delta subunit [Streptococcus vestibularis
           F0396]
 gi|311101175|gb|EFQ59380.1| DNA polymerase III, delta subunit [Streptococcus vestibularis
           F0396]
          Length = 344

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 117/336 (34%), Gaps = 31/336 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +   +F K I     D     F +   +  + + +       + S  
Sbjct: 18  ITVLVGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ ++ +          + K L  LE  +   +    +++ +  ++     L 
Sbjct: 71  FFADEKVVIFDHFADMTTAKKSYLDDKALKRLENYLQSPVETTRLVLMASGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++    L +   P     L    ++          K   + LL     D    +  L
Sbjct: 131 KLLKRD--ALVLEANPLKDAELRTYFQKQAHQEGLIFEKGVFEELLIKSSFDFSDVQKNL 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L  Y   +  I+ Q + + +  +    I ++    ++G+I     L            
Sbjct: 189 AFLKGYK-TEGNISSQDIAEAVPKSLQDNIFDMTQLLLRGQIQGVRELVHDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKN 304
            L+   L +F+   ++ ++      S ++I+        + + P +        R  +  
Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLGRKVNPFQVRYAIRDSRHLSVA 306

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQ-TILYIA 339
            ++ T+  +    +   K   L+K+ +F   +L IA
Sbjct: 307 FLKTTIKILVETDYQI-KTGTLDKDYLFDLALLKIA 341


>gi|320096029|ref|ZP_08027637.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977039|gb|EFW08774.1| DNA-directed DNA polymerase III delta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 325

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 99/318 (31%), Gaps = 19/318 (5%)

Query: 6   SHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK 65
           + +  + S         V +  G++  LI   +++ +        D   +   + +    
Sbjct: 2   AQRPRRTSAPTEISLAPVVLIKGTEGLLIDRALDRLRALAHQAAPD---VERTDLVAATY 58

Query: 66  NISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKK 123
                 + I S SLF + ++++I +L T    +   L         +  + ++      +
Sbjct: 59  RPGQL-DLIASPSLFGESRMVIIRDLETMSDALAADLVAYAASPAPDVWMFLVHPGGGAR 117

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              + +   +    +  +    N    + L++  +    + +   A + L+  LG D  A
Sbjct: 118 GKKVVEAVARAKWPVIPAEPLKNDRDKLALVQADVRAAGRQMDPAAMRALVDALGSDPRA 177

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
               L +L         +T + V             ++ +A + G+   A+ L      +
Sbjct: 178 MAGALAQLL--SDVPGRVTVEDVHRYQAGRVEASGYDVADAAVAGEAAKALTLTRHAFVT 235

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
            +    L+     KF    +          +    +        P + +  +  LR W+ 
Sbjct: 236 GVAPQLLVAALAMKF----RAMAKASIGGNAAALKMA-------PWQIDRARRDLRGWSD 284

Query: 304 NLVRETLHKIDHRIHLAR 321
             +      I       +
Sbjct: 285 RSLAGAFEAIATADEETK 302


>gi|312278112|gb|ADQ62769.1| DNA polymerase III delta subunit [Streptococcus thermophilus ND03]
          Length = 344

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G   +   +F K I     D     F +   +  + + +       + S 
Sbjct: 17  KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +K+++ ++ +          ++K L  LE  +   +    +++ +  ++     L
Sbjct: 70  PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   VL  +   D +  L    ++       +  K   + LL     D    +  
Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L  Y   +  I+ Q + + I  +    I ++    ++G+I +   L           
Sbjct: 188 LAFLKGYK-TEGNISSQDIMEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F+   ++ ++      S ++I+        + + P +        R  + 
Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             ++ T+  +    +  +     +  ++   +L IA  +
Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344


>gi|254361088|ref|ZP_04977233.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica PHL213]
 gi|153092574|gb|EDN73629.1| DNA-directed DNA polymerase III delta subunit [Mannheimia
           haemolytica PHL213]
          Length = 349

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 26/323 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G+D  L+ E  +       +   D    V +       N    +    S  LF 
Sbjct: 27  PFYLLTGNDLLLVNETKDAIIHTARLNGFDEKKEVEIKNDT---NWEELFEAAQSMGLFF 83

Query: 82  KKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLA 139
            ++I+++    S        L E+      + + I+   +  K    +    +   +++ 
Sbjct: 84  ARQIMVLNFPDSPTATQFKKLAELCAFIHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQ 143

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           I+C       L   +          I  EA Q+L  +  G+ +A +  LQ L      D 
Sbjct: 144 INCQTPELSKLPQWVSHRAKAMNLQIENEANQLLCYSYEGNLLALKQALQLLQL-NATDG 202

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            IT    ++++  +      + I+A  +GKI  A  +       ++ +  LL    ++  
Sbjct: 203 KITLTKAQEVVEHSAQFTPFQWIDALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELM 262

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW--NKNLVRETLHKI---- 313
           +L +I         +   ++   +   I   R      L+IW   +    +   ++    
Sbjct: 263 ILLEI-------TRNPTAVVSSEQSLFIGNLRTEFDR-LKIWQNRRPFYNQITQRLTYQK 314

Query: 314 ------DHRIHLARKKKYLEKNI 330
                        + K+    +I
Sbjct: 315 LYALIQQLAELERKVKQEFSDDI 337


>gi|119716120|ref|YP_923085.1| DNA polymerase III, delta subunit [Nocardioides sp. JS614]
 gi|119536781|gb|ABL81398.1| DNA polymerase III, delta subunit [Nocardioides sp. JS614]
          Length = 330

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 18/248 (7%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
            +   +   V +  G ++ L  E      +     +     L    A ++         E
Sbjct: 7   PRAADVLGRVTLVTGKEEFL-NERTVSAVRAAVRNHDAEAELSETVAGDLS---LATLGE 62

Query: 74  INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN----TLR 128
           + + SLFS  + +++  L    ++ +D L         +  +++      K +     LR
Sbjct: 63  LAAPSLFSSIRCVVVRALENLPEESVDGLLAYAAAPAEDVALVLVHGGGAKGSGTLTKLR 122

Query: 129 KI--AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           K+    +  S                 +   +     +I +EA   L+  +G D  +   
Sbjct: 123 KLETVTESKSGELRPS------EFPSFVAAEVRSHGSTIDQEAADFLVQAVGQDLRSLSA 176

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
              +L++       ++ + VK             + +A   G+   A+    + L     
Sbjct: 177 AADQLTN-DFPGQPLSVEKVKQYFGGRAEAKSFAVADAAFWGRRTAALEELRWALDGGTA 235

Query: 247 SHALLHGF 254
              +   F
Sbjct: 236 PVLVTSAF 243


>gi|312866199|ref|ZP_07726420.1| DNA polymerase III, delta subunit [Streptococcus downei F0415]
 gi|311098603|gb|EFQ56826.1| DNA polymerase III, delta subunit [Streptococcus downei F0415]
          Length = 346

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 123/335 (36%), Gaps = 29/335 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L   F + ++    D     F     + ++ Q +       + S  
Sbjct: 18  ITVVTGDDLGQYSQLKQLFLERVAFDPSDLAYSYFDFPENSFVDAQMD-------LESLP 70

Query: 79  LFSKKKIILIENL----STEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            FS +K+++ +NL    + +K  LD      LE  +   +    ++I +  ++     L 
Sbjct: 71  FFSDEKVVIFDNLLDLTTAKKSYLDDRDAKSLEAYLTNPVETTRLVIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++   +   S   +    L    ++         +K A + LL     D    +  L
Sbjct: 131 KLLKREGKIFEASQLKE--ADLRTHFQKVAHQAGLVFAKGAFEQLLIKSNFDFSEIQKNL 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L +Y   D  I +  +   I  T    I ++    +QGKI  A  L            
Sbjct: 189 AFLKAYK-ADGRIDQTDIDQAIPKTLQDNIFDLTQYILQGKIDQARDLVRDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKEC---SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
            L+   L +F+L  ++ I+ +     +    ++ +   + I P +        R    N 
Sbjct: 248 KLIAIMLGQFRLFTQVKILAQAGKTESAMVAQLSELLGRKINPYQVKFALRDSRPLALNF 307

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQ-TILYIA 339
           +++ +  +    +  ++   L+K  +F   +L IA
Sbjct: 308 LKQAMVILIETDYQIKQ-GKLDKAYLFDLALLKIA 341


>gi|300811323|ref|ZP_07091820.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497687|gb|EFK32712.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 329

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 99/276 (35%), Gaps = 26/276 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
            N    +   +  G D  L   L + + +  +      F  +    ++ + +        
Sbjct: 9   PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62

Query: 74  INSTSLFSKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122
           +   SLFS++K++L++N         +  K+  D L EI      I + I+++ S E + 
Sbjct: 63  LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K  EK  + +  A+  Y         +++  +       +  A  +L+      
Sbjct: 123 RRKKLTKQVEKSFNTVSTAVKSYESG-----PVMQALVKAEGYRFAGGALDLLMERSDQV 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A+     KL +   +   I+   V   I  +    +  I+ A ++G    AI   D  
Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           L        L+  F  + + L  + ++ +      E
Sbjct: 237 LREGTYPLQLVAVFFSQVEFLLCVKVMGQRRRSESE 272


>gi|260881566|ref|ZP_05404716.2| DNA polymerase III, delta subunit [Mitsuokella multacida DSM 20544]
 gi|260848770|gb|EEX68777.1| DNA polymerase III, delta subunit [Mitsuokella multacida DSM 20544]
          Length = 342

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 20/281 (7%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++  +F+    K       VF+  G +   I +        +          +   + ++
Sbjct: 3   VKFSEFMAAIRKGELP--HVFLLGGEEPYYIDKAKEALLGKLFPGGTGMADALQKVSGDM 60

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIII 115
              I      I +   F+ K +ILI           S + K ++ L            +I
Sbjct: 61  A--IDDLLASIEAAPFFADKNVILIAGTNLFRESKSSADTKEVEALVRQFGDMPPYSYLI 118

Query: 116 IKSN-EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
             +  +  K   L K        L +   P    ++ D ++  L    K + ++A     
Sbjct: 119 FVAPYKADKRRKLYKAL--AKEGLVLESEPLRAWNIQDWLQGKLQAIHKQMDRDAYAYFA 176

Query: 175 ANLGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
             +   +  S +    E  KL+ +  +   IT+  +  +      + +  +++A      
Sbjct: 177 GAVSMMQQISLSYLDKEFDKLALFS-KAPRITKAELIAVFSGLPEVSVFALLDAISARDG 235

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
             A+ML    LA       LL    +  + L +  ++    
Sbjct: 236 KKALMLLHRQLADGTYFTVLLALLTRHVRQLWQAKVLMAKG 276


>gi|307721523|ref|YP_003892663.1| DNA polymerase III delta [Sulfurimonas autotrophica DSM 16294]
 gi|306979616|gb|ADN09651.1| DNA polymerase III delta [Sulfurimonas autotrophica DSM 16294]
          Length = 322

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 9/262 (3%)

Query: 78  SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
           SLF  + I++I+      KK LD L E+  KN  N  +        K    +K   K   
Sbjct: 65  SLFGDRNILIIKSEKKVPKKELDILLELCDKNPDNIFVYAYYGSDHKTYNNKKAFAKTK- 123

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            + +  +   +    +++ +       +I K     LL    GD   + NE+ K   Y  
Sbjct: 124 AMNVRFFHPKEYEAQNIVFQLAQEKNVNIDKFTISHLLKIHNGDVALASNEIDKFRVY-- 181

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  IT + V +++     + +++ I   +     +        L        ++     
Sbjct: 182 -DKAITTKDVDNLVYGLASINLDDFIKKLL--DKKDFRDDLLNILEHGEDEIRIISAITA 238

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
               L   +I    +       I         +++     +++I       +    + + 
Sbjct: 239 YLTQLYMFNIYIRINGAPNALEILGYPAPSFIVEQKA-SAAIKI-KPQTYSKLHELLLNS 296

Query: 317 IHLARKKKYLEKNIIFQTILYI 338
               +     +  I+  +++ +
Sbjct: 297 ELQMKSSNVDKSAILLSSLIRL 318


>gi|297622798|ref|YP_003704232.1| DNA polymerase III subunit delta [Truepera radiovictrix DSM 17093]
 gi|297163978|gb|ADI13689.1| DNA polymerase III, delta subunit [Truepera radiovictrix DSM 17093]
          Length = 312

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 84/272 (30%), Gaps = 21/272 (7%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL-----IENLSTEKKVLDCLEEIIIKN 108
            +  L        ++        + LF +  ++L      +  +  K   + L+ +    
Sbjct: 29  EVTELGEGLSADGVAQL---AAQSGLFGQVALLLDFDAAFKGQAGVKPRNEVLKVLEGIP 85

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
               ++++                    +            L   +   L         E
Sbjct: 86  PDTVVVVLDLAATPARQKTYAALGHHEHLPTPRFNA-----LTHWVRAELQGAGVHFDDE 140

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
             ++L    G D  +   E+QKL+        ++ + V++I+         ++I A  +G
Sbjct: 141 VPEMLTDLFGEDLPSIAAEIQKLAVL---GERLSSERVREIVNRPASRDAFDLIEAVAKG 197

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
           +   A+ +    +A       +L   + ++ L+ +   +KE    +   ++ +T      
Sbjct: 198 EAARALSVIRSLVAQGEAPPRVLGALVWQYNLVARTVALKEGRARTDAGLVAQT-----L 252

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
             +  + +        L    L ++   +  A
Sbjct: 253 KVKPFVAQKALALAAPLDEARLGRLLSALLKA 284


>gi|24212714|ref|NP_710195.1| DNA-directed DNA polymerase subunit delta [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45655928|ref|YP_000014.1| hypothetical protein LIC10014 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193347|gb|AAN47213.1| DNA-directed DNA polymerase delta subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599161|gb|AAS68651.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 362

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 13/212 (6%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIII 116
            +   F +E  +  +FS +K+ +I++         + + K  + L++       +  ++I
Sbjct: 64  GDFERFQSEAFNLDIFSNRKLFIIKSGLEFFKPISTGKGKNNESLQKQFSNFPDSIQLLI 123

Query: 117 KSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
             N  +  N  L+    K   +   + YP+        + ++       + ++A    L 
Sbjct: 124 HYNHWEVPNKVLQIFGGKANLIKTKNFYPNETR---GGLLQACKEIGVQLDEDAIDEFLH 180

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
            +     A    L KL  Y L   + T+Q ++D++  +       +++  ++        
Sbjct: 181 KIPPSMGAYLQSLSKLKLY-LSKKIFTKQDIEDVLLFSGEFNSSGLVDFFMESDRIRFFK 239

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
               F + K           +K   L K  II
Sbjct: 240 ELKKFQSGKDSLLLFFSILKEKIDQLRKYKII 271


>gi|116627591|ref|YP_820210.1| DNA polymerase III subunit delta [Streptococcus thermophilus LMD-9]
 gi|116100868|gb|ABJ66014.1| DNA polymerase III, delta subunit [Streptococcus thermophilus
           LMD-9]
          Length = 344

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G   +   +F K I     D     F +   +  + + +       + S 
Sbjct: 17  KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +K+++ ++ +          ++K L  LE  +   +    +++ +  ++     L
Sbjct: 70  PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   VL  +   D +  L    ++       +  K   + LL     D    +  
Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQTHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L  Y   +  I+ Q + + I  +    I ++    ++G+I +   L           
Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F+   ++ ++      S ++I+        + + P +        R  + 
Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             ++ T+  +    +  +     +  ++   +L IA  +
Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344


>gi|238927634|ref|ZP_04659394.1| DNA polymerase III, delta subunit [Selenomonas flueggei ATCC 43531]
 gi|238884559|gb|EEQ48197.1| DNA polymerase III, delta subunit [Selenomonas flueggei ATCC 43531]
          Length = 347

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 114/355 (32%), Gaps = 33/355 (9%)

Query: 7   HKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
           H+F+    +       +++  G +   I        + +        +  ++   E+   
Sbjct: 4   HEFMASLAQGTPPQ--IYLLAGEEPYYIRRAEEAILRRLLPDAA-ERADALIRYEEMPA- 59

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNH-------------- 112
           I      + +   F+ K ++L+ + +  +      E                        
Sbjct: 60  IDALAESLETAPFFTDKIVVLVHDAAVFRAGKKAAEGDTPAPKDAAAERLLSLLTNLLPT 119

Query: 113 -IIIIKSNEIK-KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
             ++   N    K   L +  +K   +  +        ++   + E L    +S+ +EA+
Sbjct: 120 TYVVFTLNAKPDKRRKLYQAVQKAGRI--LESELVRPWNVEGWLNERLREMGRSMQREAR 177

Query: 171 QILLANLGGDRIASR----NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
              L  +G  +  S      +L+KL+ Y  ++   TE  ++    +   + +  +++A  
Sbjct: 178 TFFLNVVGMMQTISLEFLDRQLEKLTLYT-DNKQFTEADLRAAFSEMPEVSVFALMDAIS 236

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKTEKN 285
              +  A+ L     A  +    LL   ++  + L +   ++   +       +      
Sbjct: 237 ARDVRRAMDLLARCRADGVHFTVLLALLVRHVRQLWQAKRLLMNGTPPKGLGKVMGLHPF 296

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
           I       L    + +++  +   +  +    +L  K       ++   ++ + +
Sbjct: 297 I----AEKLGGHAKAFSEATLEHAVLALADADYLL-KTGQAGDELLEDALIRLCR 346


>gi|329667526|gb|AEB93474.1| hypothetical protein LJP_1152c [Lactobacillus johnsonii DPC 6026]
          Length = 329

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 117/331 (35%), Gaps = 66/331 (19%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80
            +  G D          F   +   Y +  S   L+ + +          + +    SLF
Sbjct: 17  LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IKKNNTLRK 129
           S +K+++++N            KK ++ L +II    ++ + ++ + + E I +   + K
Sbjct: 69  SNQKVVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLSDLEDVVVFVANYEKIDRRKKISK 128

Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +  +  +V+      Y      +  +I+         I+  A QIL+         S + 
Sbjct: 129 LLLEHVNVVETTFKPYE-----VSGIIKAISKEEGYQITNMALQILIQRSDQVLDVSLSN 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             KL +   ED  ITE  + + I  +    I EI+ A    K   A    +  L     +
Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL  F  +F+ L  + ++                               R W+K+ + 
Sbjct: 244 IQLLAIFESQFEFLTCVKVL-----------------------------QNRRWSKDQIT 274

Query: 308 ETLH--------KIDHRIHLARKKKYLEKNI 330
           + L          +++++ L++    L++ I
Sbjct: 275 KELKVNPYRVKLALENKVSLSKLTVLLKQAI 305


>gi|78776741|ref|YP_393056.1| DNA polymerase III subunit delta [Sulfurimonas denitrificans DSM
           1251]
 gi|78497281|gb|ABB43821.1| DNA polymerase III, delta [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 34/286 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           FI +G    LI    +          ++  S++     E   N +     ++  SLF  +
Sbjct: 19  FILFGESTFLIDRYTDILS------INEGASVLKFYHDEYNFNSAKAH--LSQASLFGDQ 70

Query: 84  KIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIK--------SNEIKKNNTLRKIAEKF 134
            I++I+      KK LD L E   K   N  +           +  + K  T+       
Sbjct: 71  NILIIKSEKKIPKKELDILIEQCEKGSDNIFVYAYYGSDYTSYAKPLSKTKTMPVRFFHP 130

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           +   AI+            + +        I  +A   LL     D   + NE++KL  Y
Sbjct: 131 SHSEAIAS-----------VAQIAHEKNVKIDTQAINHLLNIQNSDIALACNEIEKLRVY 179

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  IT + +  +I     + I++ I   +     +        L        LL   
Sbjct: 180 ---DRAITTKDIDSLIFGLAQINIDDFIKKIL--NKRDFKSDLMSLLEHGEDEIRLLTAL 234

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                 L   +I    +       I   +     ++     ++++I
Sbjct: 235 TSYLTQLYMFNIYIRVNGAPNPIEILGYKPPPHVVEEKA-TQAIKI 279


>gi|220912734|ref|YP_002488043.1| DNA polymerase III subunit delta [Arthrobacter chlorophenolicus A6]
 gi|219859612|gb|ACL39954.1| DNA polymerase III, delta subunit [Arthrobacter chlorophenolicus
           A6]
          Length = 317

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 100/305 (32%), Gaps = 23/305 (7%)

Query: 23  VFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           + +  G  D   I        ++          +  +NA   +    +   ++ S SLF 
Sbjct: 6   IVLVSGPEDYLGI--RAMDSIRSQVRQAAPDVEVSRINAAAYE--PGSLLMQV-SPSLFG 60

Query: 82  KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
           + K+I +E + +  +  L      + +   + +++++     +   L     K    + +
Sbjct: 61  ESKLIEVEAVEAMNEPFLTDALSYLGQPADDAVLVLRHGGGARGKKLLDAVRKGGWPV-V 119

Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
            C P       M  +       Q+ I +EA   L+  +G +         +L        
Sbjct: 120 DCQPLKKDTDKMAFVSAEFKAAQRRIDQEAVLALVNAVGANLSELAAACSQLI--ADSTG 177

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +T   V             ++ +A + G    A+      LA+      L+     K +
Sbjct: 178 TVTPDVVDRYYGGRVEATAFKVADAAMAGNGPLALSTLRHALATGADPVPLVAALAAKLR 237

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES---LRIWNKNLVRETLHKIDHR 316
            + +       ++ S  +I  +       M+  +++++   +R W  + +  ++      
Sbjct: 238 TVAR----VAGASGSAAQIAAELG-----MQPWLVEQAQRDVRRWTPDGLVRSIQATAEA 288

Query: 317 IHLAR 321
               +
Sbjct: 289 DAQVK 293


>gi|227486714|ref|ZP_03917030.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235302|gb|EEI85317.1| DNA polymerase III delta subunit [Anaerococcus lactolyticus ATCC
           51172]
          Length = 338

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 126/333 (37%), Gaps = 32/333 (9%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F +      F +  +++F   ++ L   +I + ++ I+I     F+L+ +     + + 
Sbjct: 5   EFFKNFVN--FKTAGIYLFDSKEEYLNTTIIEEAERLINIK---DFNLIKIKG---ETDF 56

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKK-------VLDCLEEIIIKNICNHIIIIKSNE 120
            T  N   +  +   KKII+ +N+   K        +L+ L E   K      ++I S+ 
Sbjct: 57  ETMKNSYETYPVMEDKKIIIWQNIDLSKDGVKNYNIILEKLAEDAKKFPSYATLLIFSDT 116

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQ------- 171
                   K   K  +++ I    D  N   L   I    +  +K IS            
Sbjct: 117 TPFKGKFYKEISKNGTIVEI----DRLNNNELRSFIGRRFIKNKKKISNTYIDEIINRFS 172

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
            L  N   D     N + K+ S   ++ +I ++ ++D +     L I  + +A     I 
Sbjct: 173 YLAYNSEIDLFEIVNSVDKIISNSTDE-IIKKEDIEDQLDQVLNLNIFNLTDAIASKNIK 231

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
            A         S      + H  +++F++L  +  +    N +   I++ ++     +++
Sbjct: 232 GAFKTLLLMEKSGEDLFMIYHMLIRQFRILTTVKSLS-NQNFNDSFIMKASKIGSFELRK 290

Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
                +++ ++ + + +   ++      ++ + 
Sbjct: 291 AK--ANIKNYSMDSLIDINDRLMDMELRSKSES 321


>gi|326333921|ref|ZP_08200152.1| DNA polymerase III, delta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325948282|gb|EGD40391.1| DNA polymerase III, delta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 327

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 39/334 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G ++ L  E      K     Y     +    A ++         E+++ SLFS
Sbjct: 22  RVTLVTGKEEFL-GERTVAAAKAAVKEYDAEAEISEATAADL---TLATLGELSAPSLFS 77

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             + +++ NL     + +  L +          +I++     K + TL K+  K   V  
Sbjct: 78  SIRCVVVRNLENLPDESVAGLVDYAGMPSEEVALILVHGGGQKGSGTLAKL-RKLPKVTE 136

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR---------NELQK 190
                         ++  + +   S+ +E    L+  +G D  A           NE ++
Sbjct: 137 HKSVELKAREFGSFVKAEMRLHGASLDEEGADFLIQAVGQDLRALAAAASQLAGDNEAKR 196

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L            +HVK        +    I +A I G    A+    + L +      +
Sbjct: 197 LGL----------EHVKQYFGGRAEVKNYVIADAIISGDRVKALEEIRWALDTGSSPVYV 246

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L     +      +  +          I           +++I   + R W++  + E L
Sbjct: 247 LSAVAGQ------LRTVAN----HVAGIRDSNTPP--WKQKSIAGLA-RGWSREAIGEAL 293

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
             +       +         + + +L IA    +
Sbjct: 294 RSVARADADLKGAASDPAYTLERLVLTIAALRQR 327


>gi|116513862|ref|YP_812768.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093177|gb|ABJ58330.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 329

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 26/276 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
            N    +   +  G D  L   L + + +  +      F  +    ++ + +        
Sbjct: 9   PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62

Query: 74  INSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNIC-NHIIIIKSN--EIK 122
           +   SLFS++K++L++N         +  K+  D L EI       + +I++ ++  ++ 
Sbjct: 63  LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K  E+  + +  A+  Y         +++  +       +  A  +L+      
Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A+     KL +   +   I+   V   I  +    +  I+ A ++G    AI   D  
Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           L        ++  F  + + L  + ++ +      E
Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272


>gi|117927983|ref|YP_872534.1| DNA polymerase III, delta subunit [Acidothermus cellulolyticus 11B]
 gi|117648446|gb|ABK52548.1| DNA polymerase III, delta subunit [Acidothermus cellulolyticus 11B]
          Length = 342

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 100/288 (34%), Gaps = 13/288 (4%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + +  G ++ L+   + +       +      ++ + A E+          + + SL
Sbjct: 22  ASSLIVIIGDEEFLVDRAVRRLIDETVGSDRASADVLQVEAAELDG--GRLAT-LVAPSL 78

Query: 80  FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK--FTS 136
           F+ ++++++ N  +  K+  D L  +  + + +  + +      K N  + + E      
Sbjct: 79  FADQRVVVLRNADALSKESADELLSLCRRAVDDPTLHVILTHRGKTNRGKTVLEDVLGLG 138

Query: 137 VLAISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
              I C         +D +        +SIS++  + L+  +G D         +L++  
Sbjct: 139 ARRIDCPRLTRTGERIDFVRGEFAAQGRSISEDTARALVDAIGADVAELAAACAQLAADT 198

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT   V+             + +A + G+   A+    + LA+      ++    
Sbjct: 199 --TGRITADVVRRYFRGRADASGFAVADAILDGERSVALEQLRWALATGTAPVLIVGAVA 256

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
           Q  ++L    +           + ++      P + +  +  LR W  
Sbjct: 257 QGLRVL--ARVGSAGRGRRPADVARELGLP--PWRVDRARAQLRHWTP 300


>gi|291277460|ref|YP_003517232.1| putative DNA polymerase III subunit delta [Helicobacter mustelae
           12198]
 gi|290964654|emb|CBG40509.1| putative DNA polymerase III, delta subunit [Helicobacter mustelae
           12198]
          Length = 326

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 107/311 (34%), Gaps = 34/311 (10%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M   E    + KS           +FYG D   +    + + K I     D  ++  L  
Sbjct: 1   MYKKEFDALLAKSIPQ------AMLFYG-DGFYV----DFYTKKILQKMQDA-NITTLYF 48

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
            + Q +  +  + +   SLF    +++++ +    KK    L   + +N  N +II   N
Sbjct: 49  SDYQLD--SVLDILGQGSLFGGNNVVVLKLDSKLSKKECQILLGCLKENPANALII---N 103

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM----------DLIEESLLIGQKSISKEA 169
            ++  N       + + + A +   +N I +            +++E        I    
Sbjct: 104 FLRSENKTLAQYGQDSRIFASNFQAENAIDVQFFAPSFSEGVGILKERSRELDIDIEDFL 163

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            Q LL    GD   +  ELQK   Y + +  IT Q ++ +      + +E+ + +     
Sbjct: 164 LQNLLQIQNGDIAIALGELQK---YQIFEEKITLQDLQQLSYGLGSVDMEDFLESLFG-- 218

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
             + + + +           +L    + F +L       +       K I   +     +
Sbjct: 219 REDYLQVYERLQEEGGDGMEVLGFLERYFFILFSFCAYIKSHGFYKAKEILGYQPP-DFV 277

Query: 290 KRNILQESLRI 300
            +     +++I
Sbjct: 278 AKQYANRAIKI 288


>gi|23268608|gb|AAN16455.1| hypothetical DNA polymerase III delta subunit [Streptococcus
           thermophilus]
          Length = 344

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 115/338 (34%), Gaps = 27/338 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G   +   +F K I     D     F +   +  + + +       + S 
Sbjct: 17  KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +K+++ ++ +          ++K L  LE  +   +    +++ +  ++     L
Sbjct: 70  PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   VL  +   D +  L    ++       +  K   + LL     D    +  
Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L  Y   +  I+ Q + + I  +    I ++    ++G+I     L           
Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQEVRELVHDLRLQGEDE 246

Query: 248 HALLHGFLQKFQ---LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             L+   L +F+    ++ +    +        +     + + P +        R  +  
Sbjct: 247 IKLIAVMLGQFRTYLQVKLLSAQGKSEQQMVSSLSDYLSRKVNPFQVRYAIRDSRHLSVA 306

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
            ++ T+  +    +  +     +  ++   +L IA  +
Sbjct: 307 FLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344


>gi|12045171|ref|NP_072982.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium
           G37]
 gi|255660453|ref|ZP_05405862.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium
           G37]
 gi|2496380|sp|Q49416|Y315_MYCGE RecName: Full=Uncharacterized protein MG315
 gi|3844892|gb|AAC71537.1| DNA polymerase III, delta subunit, putative [Mycoplasma genitalium
           G37]
 gi|166078740|gb|ABY79358.1| DNA polymerase III, delta subunit, putative [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 297

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 21/227 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS--K 82
           I YG D GLI + ++Q K N       P+  +        K++   ++ + S  LF    
Sbjct: 3   IIYGQDIGLIHQKLSQIKSNS------PYKTIWF------KDLKQLYD-LFSQPLFGSNN 49

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           +K I+      EK  L   E + ++ +    +++        + ++ I     S+  + C
Sbjct: 50  EKFIVNNCSFLEKTSLTRQENLCLEKLKTTDVVLTVYTDNPFSGIKTI----KSITTVFC 105

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
              +   +   I E        +  E    L   L  +      E+ KLS    ++ +  
Sbjct: 106 DKLDWKSMHKAIGEVCRELNLKLDLEIIDWLANALPLNMGVIYQEINKLSL-LGKNEIKD 164

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            + V+ +ICD   + I ++  A    +I  A    D  LAS  P+ A
Sbjct: 165 NKLVETVICDYQPVQIYKLTKALTNSQIVKAFKYIDE-LASTKPNFA 210


>gi|322391770|ref|ZP_08065235.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           peroris ATCC 700780]
 gi|321145250|gb|EFX40646.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           peroris ATCC 700780]
          Length = 345

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 105/273 (38%), Gaps = 25/273 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP-FSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +F G+D+G    +  Q  K I     D  F+   +  ++ +        E+ S   F+ +
Sbjct: 20  LFTGADQGQYDIMKTQVLKQIGYDPADLNFAYFYMKEVDYKS----LELELVSLPFFADE 75

Query: 84  KIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEK 133
           KI++++   +++T KK       L   E+ +   + +  ++I +  ++     L K+ ++
Sbjct: 76  KIVILDHFLDITTAKKRYLTDDELKSFEDYLENPLPSSKLVIFAEGKLDSKRRLVKLLKR 135

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                        +  L    ++       +    + + LL   G       +E+QK   
Sbjct: 136 D--AAVFEAIEPKEQELRAYFQKWAQEQGLTFDGNSFEQLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +     +  LITE+ + + I  T    I ++    +  KI  A  L             L
Sbjct: 190 FLQSYKDSGLITEEDIVEAIPKTLQDNIFDLTQLILGDKIDQARDLVKDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           +   L +F+L  ++ I++E S  +  +++    
Sbjct: 250 IAIMLGQFRLYTQVKILQE-SGQTESQMVSSLG 281


>gi|123967070|ref|YP_001012151.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9515]
 gi|123201436|gb|ABM73044.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 333

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 108/300 (36%), Gaps = 36/300 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D     + I +             ++  LN  +    I   ++EI +  L  
Sbjct: 2   PIQIIWGNDLNACNKFIKKIIDQKVSKIWIEINVSYLNGDD-DNQIKQAFDEILTPPLGD 60

Query: 82  KKKIILIENLSTEKKVLD----CLEEIIIKNICNHIIIIKSNEIKK-NNTLRK------- 129
             ++++++N        +      E+I      N   I++   IKK ++ L+        
Sbjct: 61  GSRVVVLKNNPIFTNKNEDIRIKFEKIYQNIPDNTYFILQ--NIKKPDSRLKSTKFIQNL 118

Query: 130 -----IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
                + E   S+  I  Y   K +L              + + A ++++ ++G D    
Sbjct: 119 IKKDLVLETSFSLPDIWDYEGQKRYLEVTANSM----NIQLGEGAAELIMKSIGNDSFNL 174

Query: 185 RNELQKLSSYCLEDIL-------ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           RNEL K   Y             +    +K+I  D     I +II+  +Q  I  +++  
Sbjct: 175 RNELAKAKIYLSASNRNETKELILKVDEIKNIFNDHQS-NIFKIIDHLLQNNINESLIDI 233

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE----KNIIPMKRNI 293
            + L    P+  L  G + + ++   + ++ +        I +       K I  +++ +
Sbjct: 234 HYLLKKGEPALRLNAGLISQIRIHTIVKLLHKSGEQDLPTICKIANISNPKRIFFIRKKV 293


>gi|15673636|ref|NP_267810.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724666|gb|AAK05752.1|AE006396_3 hypothetical protein L102491 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 334

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G  + L+ EL NQ    ++    D  S    +      +++    ++ S   FS 
Sbjct: 18  ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74

Query: 83  KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132
            +++++ENL    + +K VLD       E  +        +++I   ++     + K  +
Sbjct: 75  SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189
              ++L           L     + L+     IS        ++ A    +    +  + 
Sbjct: 135 AKATLL-------EAQELKS---QELIQYFSRISPLPKVVLSLIAAKSNDNFSVMKQNID 184

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            + +Y L    +T   V+ ++  +    I  + +   +GKI  A  L             
Sbjct: 185 LVQTYALG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L      ++L  ++ +  +       + +   +  + P    +  + +R  N   ++  
Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300

Query: 310 LHKI 313
           L  +
Sbjct: 301 LSDL 304


>gi|55980757|ref|YP_144054.1| DNA polymerase III subunit delta [Thermus thermophilus HB8]
 gi|55772170|dbj|BAD70611.1| DNA polymerase III, delta subunit [Thermus thermophilus HB8]
          Length = 292

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159
            L+ ++        +++      K +  R    +                L+  +E    
Sbjct: 64  ALKPLLESVPEGVPVLLLDP---KPSPSRAAFYRNRERRDFP--TPKGKDLVRHLENRAK 118

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                +     Q L + L GD  A   EL+KL+        +T + V+ ++     L   
Sbjct: 119 RLGLRLPGGVAQYLAS-LEGDLEALERELEKLALLSPP---LTLEKVEKVVALRPPLTGF 174

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           +++ + ++     A++              LL     +F LL +   +   +    E+ +
Sbjct: 175 DLVRSVLEKDPKEALLRLRRLKEEGEEPLRLLGALSWQFALLARAFFLLRENPRPKEEDL 234

Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
            + E +    +R +  E+ +   +  ++E L  +      A+
Sbjct: 235 ARLEAHPYAARRAL--EAAKRLTEEALKEALDALMEAEKRAK 274


>gi|148272731|ref|YP_001222292.1| DNA polymerase IIIsubunit delta [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830661|emb|CAN01597.1| DNA polymerase III, delta subunit [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 342

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 113/306 (36%), Gaps = 21/306 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G++  L+ +   +  ++I         +  + A             + S SLF+
Sbjct: 29  PIVLVSGTEA-LLADRAMRRLRDILTAEDPRIEVSDIEADSYA--PGELIT-LASPSLFA 84

Query: 82  KKKIILIEN--LSTEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVL 138
           + ++I + N   S+++ +LD +   + +   +  ++++ +  ++    L  +       +
Sbjct: 85  EPRLIRVVNVEKSSDQFLLDAVA-YLDQPADDTYVVLRHAGGVRGKKLLDAVRAGTGGGI 143

Query: 139 AISCYP---DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            + C     D++ H  D         ++SI+  A + L+A    D     +  Q+L    
Sbjct: 144 EVVCAELKKDSEKH--DFAVAEFRAAKRSITPGAVRQLVAAFQDDVSELASACQQLI--S 199

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                ITE  V         +    + ++ I G+   A++L    L S      L+  F 
Sbjct: 200 DTAHEITEVTVDQYYGGRVEINAFAVADSAIAGRGGEALVLLRHALTSGADPVPLIAAFA 259

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                  KI  + + S +S       ++  + P + +  +  L++W+   +   +  +  
Sbjct: 260 ------MKIRTMAKVSGVSGASGQLASKLGMAPWQVDRARRDLQLWDDAGLGRAIEALAE 313

Query: 316 RIHLAR 321
                +
Sbjct: 314 ADAQVK 319


>gi|46198742|ref|YP_004409.1| putative cytoplasmic protein [Thermus thermophilus HB27]
 gi|46196365|gb|AAS80782.1| hypothetical cytosolic protein [Thermus thermophilus HB27]
          Length = 292

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 16/243 (6%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL 159
            L+ ++        +++      K +  R    +                L+  +E    
Sbjct: 64  ALKPLLESVPEGVPVLLLDP---KPSPSRAAFYRNRERRDFP--TPKGKDLVRHLENRAK 118

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                +     Q L + L GD  A   EL+KL+        +T + V+ ++     L   
Sbjct: 119 RLGLRLPGGVAQYLAS-LEGDLEALERELEKLALLSPP---LTLEKVEKVVALRPPLTGF 174

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           +++ + ++     A++              LL     +F LL +   +   +    E+ +
Sbjct: 175 DLVRSVLEKDPKEALLRLRRLKEEGEEPLRLLGALSWQFALLARAFFLLRENPRPKEEDL 234

Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILY 337
            + E +    K+ +  E+ R   +  ++E L  +      A+  K  +L    +   +L 
Sbjct: 235 ARLEAHPYAAKKAL--EAARRLTEEALKEALDALMEAEKRAKGGKDPWLA---LEAAVLR 289

Query: 338 IAQ 340
           +A+
Sbjct: 290 LAR 292


>gi|301321382|gb|ADK70025.1| DNA polymerase III, delta subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 316

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           ++ FY  D  L+    NQ KK I      D + +  L+   I+ + +T ++ + + + FS
Sbjct: 1   MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55

Query: 82  KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            K II+I +            +   L+ LE ++     N+III  + SN+  K   + K 
Sbjct: 56  SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 115

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E   +V  +    D K  +  +I+  L    K I       +   L  D     NE+ K
Sbjct: 116 IESSFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 173

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       +    +K  +   H   I ++++A I   I   I L   ++        L
Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGL 230

Query: 251 L 251
           +
Sbjct: 231 I 231


>gi|55820785|ref|YP_139227.1| DNA polymerase III subunit delta [Streptococcus thermophilus LMG
           18311]
 gi|55736770|gb|AAV60412.1| DNA polymerase III delta subunit [Streptococcus thermophilus LMG
           18311]
          Length = 344

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G   +   +F K I     D     F +   +  + + +       + S 
Sbjct: 17  KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +K+++ ++ +          ++K L  LE  +   +    +++ +  ++     L
Sbjct: 70  PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   VL  +   D +  L    ++       +  K   + LL     D    +  
Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLTFDKGVFEELLVKSSFDFSDIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L  Y   +  I+ Q + + I  +    I ++    ++G+I +   L           
Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F+   ++ ++      S ++I+        + + P +        R  + 
Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             ++ T+  +    +  +     +  ++   +L IA  +
Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344


>gi|42561461|ref|NP_975912.1| hypothetical protein MSC_0945 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492960|emb|CAE77554.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
          Length = 319

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           ++ FY  D  L+    NQ KK I      D + +  L+   I+ + +T ++ + + + FS
Sbjct: 4   MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 58

Query: 82  KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            K II+I +            +   L+ LE ++     N+III  + SN+  K   + K 
Sbjct: 59  SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 118

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E   +V  +    D K  +  +I+  L    K I       +   L  D     NE+ K
Sbjct: 119 IESSFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 176

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       +    +K  +   H   I ++++A I   I   I L   ++        L
Sbjct: 177 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKLYHDYILLNDDIIGL 233

Query: 251 L 251
           +
Sbjct: 234 I 234


>gi|313894529|ref|ZP_07828093.1| putative DNA polymerase III, delta subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313440925|gb|EFR59353.1| putative DNA polymerase III, delta subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 325

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 38/319 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG +  LI E   +F             + VL+    +        ++   SLF  +K
Sbjct: 6   LIYGDEPQLIEEEKRKFLSAYPDLP-----VTVLDD---EAGPQKISEKLCEDSLFGDQK 57

Query: 85  II------LIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           +       +I            L E+I++   ++ I++  +++  +  +++  E    + 
Sbjct: 58  VFCLVNLPIIRKSGKNSDAWVPLYELIMEYNGDNPILLIYHDM-IDKRIKQNKEILDKIP 116

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN--LGGDRIAS--RNELQKLSSY 194
              C       L+  I +        +  +A++ +     L  D   S  R E  +    
Sbjct: 117 NHQCKRLVGADLVMWIRQYCTSNGFKMMPDAQEYVAHLVDLWQDVPVSFMRTEFDRYFLQ 176

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--PSHALLH 252
              + +IT++ +++   D     I     A ++  I   + L  F    K    + + + 
Sbjct: 177 ITGEKVITKEFLEENGSDYGAKNIFTFKEALLKRDIDTLLKLFPFMFGYKELDRAMSYIE 236

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKII-------QKTEK-NIIPMKRNILQESLRIWNKN 304
           G L+    L+ +      + +S + I           +   I    +   + S RI +  
Sbjct: 237 GQLR----LQLLVNECRQAGMSVQAIQNLCKDHDSSFKPYPI----KLAYEASSRI-STK 287

Query: 305 LVRETLHKIDHRIHLARKK 323
            +R  L  +   I  +R  
Sbjct: 288 ALRALLKGLYEIILDSRSS 306


>gi|281492235|ref|YP_003354215.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375906|gb|ADA65400.1| DNA polymerase III, delta subunit [Lactococcus lactis subsp. lactis
           KF147]
          Length = 334

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G  + L+ EL NQ    ++    D  S    +      +++    ++ S   FS 
Sbjct: 18  ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74

Query: 83  KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132
            +++++ENL    + +K VLD       E  +        +++I   ++     + K  +
Sbjct: 75  SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189
              ++L           L     + L+     IS        ++ A    +    +  + 
Sbjct: 135 AKAALL-------EAQELKS---QELIQYFSRISPLPKAVLSLIAAKSNDNFSVMKQNID 184

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            + +Y L    +T   V+ ++  +    I  + +   +GKI  A  L             
Sbjct: 185 LVQTYALG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L      ++L  ++ +  +       + +   +  + P    +  + +R  N   ++  
Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300

Query: 310 LHKI 313
           L  +
Sbjct: 301 LSDL 304


>gi|171778638|ref|ZP_02919734.1| hypothetical protein STRINF_00586 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282595|gb|EDT48019.1| hypothetical protein STRINF_00586 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 345

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 27/305 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +L  +  + +     D     F +  +N  + + +       + S  
Sbjct: 18  IMVVTGEDLGQFSQLKERMMERVGYDKDDLTYSYFDMTEVNYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENL----STEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ +NL    + +K  LD       E  +   +    +II +  ++     L 
Sbjct: 71  FFADQKVVIFDNLLDITTAKKSYLDDKELKRFEAYLENPLDTTRLIIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++   +         +  L    ++              + LL     D       +
Sbjct: 131 KILKRDAQI--FEASELKEAELKTYFQKLAHKENLVFDSGVFEALLLKSNYDFSEILKNI 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS- 247
             L SY  +D  ITE  +   I  T    I ++    + GKI  A  L            
Sbjct: 189 AFLKSYK-KDGHITEDDINQAIPKTLQDNIFDLTQFVLNGKIDEAHELIRDLRLQGEDEI 247

Query: 248 --HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
              A++ G L+ F  +  +    +        + +   + + P +        R  +   
Sbjct: 248 KLIAIMLGQLRMFLQVSILASQGKNEQQMVATLSEYLGRRVNPYQVKFAVRDSRTLSMTF 307

Query: 306 VRETL 310
           +++ L
Sbjct: 308 LKKAL 312


>gi|308274788|emb|CBX31387.1| hypothetical protein N47_E48990 [uncultured Desulfobacterium sp.]
          Length = 494

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 86  ILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA-EKFTSVLAISCYP 144
           I +            L+ I       + +I+ +  + K   L K   EK    + I C  
Sbjct: 175 IRVLESIDSASFF--LKAIDKGFPEGNHLIVTALLVDKRLVLYKALKEKG---VIIDCQV 229

Query: 145 DNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                  + I           E L    K+I  +A   +    G D  A  N L+KL ++
Sbjct: 230 PKGDSKNEKIVRENIIRERMNEILTKSGKTIDNDAYSAMYEKTGFDLRALLNNLEKLINF 289

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +   IT + V+ ++  T    I  + NA     I +++   D  L + +     L   
Sbjct: 290 T-DKNKITVEDVESVLKRTKQDPIYALTNAVSGRNITDSLFYLDSLLYAGIHPLQALAAI 348

Query: 255 LQKFQLLEKIH 265
           + + + +  I 
Sbjct: 349 INQIRKIIYIK 359


>gi|282859338|ref|ZP_06268449.1| DNA polymerase III, delta subunit [Prevotella bivia JCVIHMP010]
 gi|282587884|gb|EFB93078.1| DNA polymerase III, delta subunit [Prevotella bivia JCVIHMP010]
          Length = 342

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 106/287 (36%), Gaps = 23/287 (8%)

Query: 5   ESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
           +     Q+   +L    +   ++  G +   I ++ +    N+       F+  +    +
Sbjct: 4   KLDAIFQRVIADLKAKKYAPFYLLMGEESYFIDKISDFIANNVLEPEMRDFNQTICFGSD 63

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII---KSN 119
           +    +   +      + ++ ++I+++     + + + LE+ +   +    I++   K+ 
Sbjct: 64  VS--CAQVVDMAKRYPMMAEHQVIIVKEAQNVRSL-EPLEKYLSGQLVKSTILVWCHKNG 120

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL-----IEESLLIGQKSISKEAKQILL 174
            I     + K+A     V        + + L D      I+E L   + +I  +AKQ++ 
Sbjct: 121 SIDGKKKIVKLANAAGVVF-------DSVKLRDYQLPIFIQEYLDAKKVTIDPKAKQMVA 173

Query: 175 ANLGGDRIASRNELQKLSSYCLEDI-LITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
             +G D     +EL K+     E+  +IT   V+  I  +      E+ NA +Q  I+ A
Sbjct: 174 DAVGADLNRLTSELDKVMISLPENGMMITPDIVEKEIGISKDFNAFELRNAIVQKNIFKA 233

Query: 234 IMLADFFLASKMPSHA--LLHGFLQKFQLLEKIHIIKECSNISFEKI 278
             +  +F  +         L      F+ L   H I   ++      
Sbjct: 234 NQIIKYFDNNPKAGSLYSFLPMLFSYFRDLMIAHYIPGNNSEDALAA 280


>gi|310822491|ref|YP_003954849.1| DNA polymerase III subunit delta [Stigmatella aurantiaca DW4/3-1]
 gi|309395563|gb|ADO73022.1| DNA polymerase III, delta subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 439

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 15/240 (6%)

Query: 89  ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-----TSVLAISCY 143
              + E      LE +       H +++ ++++   + L K A+         V A    
Sbjct: 169 RVSAPEGDASALLELLQKGLPKGHALVLAASDVDAKSALLKFAKDEGWFIERKVAA---- 224

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
               + L ++  E L   +K +   A + L   +GG+    ++EL+KL+ Y      I  
Sbjct: 225 RHKDLDLSEIAREFLAPFKKKLGAGALEQLKERVGGNIRLLQSELEKLAIYANG-ATIEA 283

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V  ++         E+  +  +  +  A+  A+  +     +  LL       + L +
Sbjct: 284 ADVALLVHHAREEEFFELSESIQKRDLRGALDYAEDAMGQGTHALQLLGAVASIIRGLLE 343

Query: 264 IH-----IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
                    +     SF+    +    I    +     +   W   L  +   + + R  
Sbjct: 344 NRERLGLYAQGAVPRSFDDFKARLFPKIEQEAKAAKGRAPHPWAAFLSMQAAARYERREL 403



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ +G +  L+ +  ++  K +        +  VL+A     +      E+ +  LF 
Sbjct: 19  PLYLLWGEE-FLVRKGADELVKALVPDAAMGLNHAVLDA----ASPREVAQELATLPLFP 73

Query: 82  KKKIILIEN---LSTEKKVLDCL 101
            +K++L+ +   L+ +K   D L
Sbjct: 74  GRKVVLVRDPEFLAPKKGRGDAL 96


>gi|325125519|gb|ADY84849.1| Putative DNA polymerase III, delta subunit [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 329

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 26/276 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
            N    +   +  G D  L   L + + +  +      F  +    ++ + +        
Sbjct: 9   PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62

Query: 74  INSTSLFSKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122
           +   SLFS++K++L++N         +  K+  D L EI      I + I+++ S E + 
Sbjct: 63  LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K  E+  + +  A+  Y         +++  +       +  A  +L+      
Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A+     KL +   +   I+   V   I  +    +  I+ A ++G    AI   D  
Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           L        ++  F  + + L  + ++ +      E
Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272


>gi|284048788|ref|YP_003399127.1| DNA polymerase III, delta subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283953009|gb|ADB47812.1| DNA polymerase III, delta subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 353

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 86/277 (31%), Gaps = 26/277 (9%)

Query: 68  STFWNEINSTSLFSKKKIILIENLS--TEKKV---------------LDCLEEIIIKNIC 110
                 IN+   F     ++IE+    TEK                 L+   E++     
Sbjct: 62  EALGEAINTMPFFGGGNWVVIEDPRVLTEKAPARKTGTKGKGKKVTPLEQFTELLSDVPD 121

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
              +     ++ K     K        + + C       L   +           + +A 
Sbjct: 122 YAYVFCLCTKLDKRQGFYKA--MSRKAVVVECPTLRSYQLQPWLRSQADQYGARFTPDAL 179

Query: 171 QILLANLGGD----RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
            ++            +  + E+ K++ Y  E  L   + V  +      +    + NA  
Sbjct: 180 NLIQEYASAADTVPLLFLQQEIAKIALYAGERKLWQAEDVAQMFSQLPEISGFALGNAV- 238

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE-CSNISFEKIIQKTEKN 285
           + +  + ++L          S  +    ++ F  L ++  +KE     + +  I  T K 
Sbjct: 239 EERKLDKVLLLLKEERKNSGSDGITGLAMRLFASLRRLLQVKEMVKQGARQDAIASTLK- 297

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
           + P    +  +    +++  ++  + ++      +R+
Sbjct: 298 MHPYAVKLAMQHSNYFSEESLQNGMVQLARLTADSRQ 334


>gi|329946978|ref|ZP_08294390.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526789|gb|EGF53802.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 343

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 103/327 (31%), Gaps = 23/327 (7%)

Query: 33  LIFELINQFKKNISITY-------HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
           LI             +             +  L A   +       + + S SLF + ++
Sbjct: 31  LIRAGEEVLADRTVTSLLSQARAKDPTTEVTRLEAATYE--PHQL-DTLVSPSLFGEPRL 87

Query: 86  ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           + +  L      +L  L   +        +I++ N  ++   L            + C  
Sbjct: 88  VYVPALEQMTDALLADLLAYVEAADPEVSVILRHNGGQRGKRLLDAIRSSPY-PTVQCDA 146

Query: 145 -DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
             N      L+   +    +SI+ EA   L+  LG D     + + +L         I+ 
Sbjct: 147 IKNAKDKSSLVVADVRRAGRSIAPEAVGALVDALGSDVRELCSAVDQLL--ADTQGTISV 204

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
            HV+             + +A   G    AI      +A+     A++     K + L +
Sbjct: 205 DHVRTYYAGRIEATGFTVADAAAAGNTPAAITALRHAVATGTDPVAIVAALAMKVRQLAR 264

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           +         +  + +   E  + P + +  +  L+ W+ + +  ++  +      A+  
Sbjct: 265 VAA-------AGGRRMSPAELGMAPWQVDRARRELQGWSDDALATSILAVARADAEAKGA 317

Query: 324 KYLEKNIIFQTILYIAQTACKNNNFYK 350
                  + + +L I   A ++    +
Sbjct: 318 SRDPVYAVERAVLTICN-ARRSGTRRR 343


>gi|54023361|ref|YP_117603.1| hypothetical protein nfa13940 [Nocardia farcinica IFM 10152]
 gi|54014869|dbj|BAD56239.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 321

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 11/291 (3%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +  G ++ LI   +     ++     DP ++ V        + +    E+ S SLF++
Sbjct: 8   VHLVLGEEELLIERAVAAIVGDVRAVAPDPEAVPVDRLRAGDASTAELA-ELLSPSLFAE 66

Query: 83  KKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            ++I++E+ +   K  +  +           ++++  +   +   +    +K  +V+   
Sbjct: 67  DRVIVLESAAEAGKDAVGVITTAAADPPEGVVLVVLHSGGGRAKAMAPALQKAGAVVHNC 126

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                    ++ +          +S E  Q +L  +G D         +L +       +
Sbjct: 127 AKLTKAAERVEFVRAEFRAAGVRVSGEVVQTVLEAVGSDLRELAAACSQLVADTGGK--V 184

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               V+        +   E+    + G    A+    + +   +P   L          +
Sbjct: 185 DVAAVRRYYSGRAEVTGFEVAELAVAGDRGAAVEALRWAIDRGVPHVLLADALA---DSV 241

Query: 262 EKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLH 311
             I  +         K+ Q+          +    ++ R W    +   L 
Sbjct: 242 HTIARVGSAGRGDPFKLAQQLGMPP--WKVKKAQAQA-RGWTPATIGSALQ 289


>gi|104773855|ref|YP_618835.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422936|emb|CAI97598.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 329

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 26/276 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
            N    +   +  G D  L   L + + +  +      F  +    ++ + +        
Sbjct: 9   PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQSA------FQGLEKVTVDCESDPLDDLIAA 62

Query: 74  INSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIK 122
           +   SLFS++K++L++N         +  K+  D L EI    +  + +I++ ++  ++ 
Sbjct: 63  LAEASLFSQQKLVLVKNPIFLTGKFPAKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K  E+  + +  A+  Y         +++  +       +  A  +L+      
Sbjct: 123 RRKKLTKQVERSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A+     KL +   +   I+   V   I  +    +  I+ A ++G    AI   D  
Sbjct: 178 LDAALGNYNKLKA-ISDGQEISWDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           L        ++  F  + + L  + ++ +      E
Sbjct: 237 LREGTYPLQMVAVFFSQVEFLLCVKVMGQRRRSESE 272


>gi|126436100|ref|YP_001071791.1| hypothetical protein Mjls_3523 [Mycobacterium sp. JLS]
 gi|126235900|gb|ABN99300.1| DNA polymerase III, delta subunit [Mycobacterium sp. JLS]
          Length = 320

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 21/297 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNI-SITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  G ++ L+   +    K+   +   D   +  L A E+  +      E+ S SLFS +
Sbjct: 10  LVLGDEELLVERAVAAVMKSARKLAGTDDVPVDRLRAGEVSTSE---LAELLSPSLFSDE 66

Query: 84  KIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138
           +++++E+ +   +  V               ++++ S   +       L+K+  +     
Sbjct: 67  RVVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCA 126

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+          D +       +  ++ +    +L  +G D         +L       
Sbjct: 127 KIA----KAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLV--ADTA 180

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+        +   +I +  + G +  A     + + S  P   L        
Sbjct: 181 GEVTAVAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALA--- 237

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + +  I  +   S   +    +         K    Q+  R W++  V E +  +  
Sbjct: 238 EAVHTIARVAPLSGDPYRLAGELGMPPWRVQKA---QKQARRWSRASVAEAMRLVAA 291


>gi|213966181|ref|ZP_03394367.1| DNA polymerase III, delta subunit [Corynebacterium amycolatum SK46]
 gi|213951196|gb|EEB62592.1| DNA polymerase III, delta subunit [Corynebacterium amycolatum SK46]
          Length = 352

 Score = 58.4 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 108/343 (31%), Gaps = 23/343 (6%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELIN----QFKKNISITYHDPF-SLVVLNALEIQKNIST 69
             L     V +  G ++ L+ +          +  + T  DP    V +  +      + 
Sbjct: 22  SGLSAVAPVNLIVGKEE-LLKDRARLAIVAAVRAQAATESDPGGRSVPVTTIRAGDMTTV 80

Query: 70  FWNEINSTSLFSKKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIII----KSNEIKKN 124
              E+ S SLF   +I+++ +     K+    L + +        +I+    +  + K  
Sbjct: 81  DAVELFSPSLFGDDRIVVVTDCQDAGKEPAKLLMDSVKDPAPGITLILLHSGEGRQKKMV 140

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             LRK+  +F     +      +  L   + E        + ++    +L  +G D    
Sbjct: 141 ADLRKLGVRFFEAQPL-----KRNDLPGFVGEEFASHGVKVRRDVIDTVLDAVGSDLREL 195

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
              + +L         +T + V+     +  +   EI    ++G+   A+      L   
Sbjct: 196 ATAISQLC--ADTAGKVTSEAVRTYYGASAEVSGFEIAELALRGRGGEALAKMRRALQLG 253

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
           M    L          + ++H  +  +  +     +         K   L  +       
Sbjct: 254 MAPALLSAAITGMVGDVARLHGARGVN--ARRDAHRYGMPPWKLEKTQRLASAWSTPAVA 311

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
                  ++D     A     L    + Q++L IA+ A  ++ 
Sbjct: 312 RAVVVAAQLDADTKGASSTPELS---LEQSVLRIAELAHSSHR 351


>gi|313680342|ref|YP_004058081.1| DNA polymerase III subunit delta [Oceanithermus profundus DSM
           14977]
 gi|313153057|gb|ADR36908.1| DNA polymerase III, delta subunit [Oceanithermus profundus DSM
           14977]
          Length = 294

 Score = 58.4 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
           +  A    L  L  D  A   EL+KL+     D  +T + VK ++     L   ++++A 
Sbjct: 126 APAAVAHYLGELEADLEAIHAELEKLALL---DGPLTLERVKAVVALDPPLSSFDLVDAA 182

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
             G+   A+ L    L        +L    + F     +    +  +++ +      +  
Sbjct: 183 AAGRFERAMKLLRGLLDRGEEPLRILGALSKHFTRTAVLWAELQRRHLTEKDAAALLK-- 240

Query: 286 IIPMKRNILQESLRIWNKNLVRETLH 311
           + P     L    R  ++  +   L 
Sbjct: 241 LHPFAAKKLLAFARRIDEARLLRALD 266


>gi|313123472|ref|YP_004033731.1| DNA polymerase iii, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280035|gb|ADQ60754.1| DNA polymerase III, delta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684381|gb|EGD26550.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 329

 Score = 58.4 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 26/276 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI-STFWNE 73
            N    +   +  G D  L   L + + +  +      F  +    ++ + +        
Sbjct: 9   PNSQAGNPNVLLQGPDAFLNDYLAHNYVQQAA------FQGLEKVTVDCESDPLDDLIAA 62

Query: 74  INSTSLFSKKKIILIENLS--------TEKKVLDCLEEIII--KNICNHIIIIKSNE-IK 122
           +   SLFS++K++L++N            K+  D L EI      I + I+++ S E + 
Sbjct: 63  LAEASLFSQQKLVLVKNPIFLTGKFPVKYKQQGDRLLEIFSHLDQIDDVIVLVASYEKLD 122

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K  EK  + +  A+  Y         +++  +       +  A  +L+      
Sbjct: 123 RRKKLTKQVEKSFNTVSTAVKSYESG-----RVMQALVKAEGYRFAGGALDLLMERSDQV 177

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
             A+     KL +   +   I+   V   I  +    +  I+ A ++G    AI   D  
Sbjct: 178 LDAALGNYNKLKA-ISDGQEISRDLVDRNIDLSLDQNVFAILEAALRGDYQEAIDRLDGQ 236

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE 276
           L        L+  F  + + L  + ++ +      E
Sbjct: 237 LREGTYPLQLVAVFFSQVEFLLCVKVMGQRRRSESE 272


>gi|108800477|ref|YP_640674.1| hypothetical protein Mmcs_3511 [Mycobacterium sp. MCS]
 gi|119869615|ref|YP_939567.1| hypothetical protein Mkms_3583 [Mycobacterium sp. KMS]
 gi|108770896|gb|ABG09618.1| DNA polymerase III, delta subunit [Mycobacterium sp. MCS]
 gi|119695704|gb|ABL92777.1| DNA polymerase III, delta subunit [Mycobacterium sp. KMS]
          Length = 320

 Score = 58.4 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 95/297 (31%), Gaps = 21/297 (7%)

Query: 25  IFYGSDKGLI-FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  G ++ L+   +    K    +   D   +  L A E+  +      E+ S SLFS +
Sbjct: 10  LVLGDEELLVERAVAAVLKSARKLAGTDDVPVDRLRAGEVSTSE---LAELLSPSLFSDE 66

Query: 84  KIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138
           +++++E+ +   +  V               ++++ S   +       L+K+  +     
Sbjct: 67  RVVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCA 126

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+          D +       +  ++ +    +L  +G D         +L       
Sbjct: 127 KIA----KAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLV--ADTA 180

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             +T   V+        +   +I +  + G +  A     + + S  P   L        
Sbjct: 181 GEVTAVAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALA--- 237

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           + +  I  +   S   +    +         K    Q+  R W++  V E +  +  
Sbjct: 238 EAVHTIARVAPLSGDPYRLAGELGMPPWRVQKA---QKQARRWSRASVAEAMRLVAA 291


>gi|189218832|ref|YP_001939473.1| DNA polymerase III, delta subunit [Methylacidiphilum infernorum V4]
 gi|189185690|gb|ACD82875.1| DNA polymerase III, delta subunit [Methylacidiphilum infernorum V4]
          Length = 376

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 26/303 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW----NEINST 77
            VFIF G D     +    F +           + + +  E   N          EI + 
Sbjct: 10  RVFIFGGEDFYEAQKKALAFVEKCKQQNPSIEIVSLADEPETASNSLVLLRHLKEEILTP 69

Query: 78  SLFSKKKIILIENL-----------STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            LF   K++  +N            + E++V +  + +        I++I +  I K   
Sbjct: 70  PLFEDLKLLFWKNARFLAVGGLAEKTIEQEVGEIFKILRESPPDYLIVVILAESIDKRKK 129

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE---AKQILLANLGGDRIA 183
           L +   K    L ++   D       ++E    + +K I  +   A Q+L+ + G  R  
Sbjct: 130 LFQEL-KSNFQLELTDKLDPSDS-SSIMEVMNKLEEKGIEGDVNLALQLLIES-GSQRSL 186

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
              E++KLS Y      I E+ + D+ C      I    +  +  K   A +   + L  
Sbjct: 187 LDMEMEKLSIYLGGKGKIDEKALSDLFCGRRETVIWRFCDLVMAAKFDLAFVELQYLLQE 246

Query: 244 KMPSHALLHGFLQKFQ-----LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                 ++    Q+       LL     + +         +  TE+      +    E +
Sbjct: 247 GGSEIGIILALAQRIFWACLGLLLIEKGLLQFQAKGKYSKLHITEEGYFFYPKKKTGEEV 306

Query: 299 RIW 301
             W
Sbjct: 307 NQW 309


>gi|83319994|ref|YP_424721.1| hypothetical protein MCAP_0772 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283880|gb|ABC01812.1| conserved hypothetical protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 316

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 22/241 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           ++ FY  D  L+    NQ KK I      D + +  L+   I+ + +T ++ + + + FS
Sbjct: 1   MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55

Query: 82  KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            K II+I +            +   L+ LE ++     N++II  + SN+  K   + K 
Sbjct: 56  SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNVIIFTLNSNKFSKKLKIAKY 115

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E   +V  +    D K  +  +I+  L    K I       +   L  D     NE+ K
Sbjct: 116 IESNFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLANQIYNLLPNDLQIITNEINK 173

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       +    +K  +   H   I ++++A I   I N I L   ++        L
Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDNFIKLYHDYILLNDDIIGL 230

Query: 251 L 251
           +
Sbjct: 231 I 231


>gi|327468968|gb|EGF14440.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK330]
          Length = 348

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G         L  
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  E   I  + + + I  T    I ++    +Q KI  A  L             L
Sbjct: 191 LKGYK-ESGQIDLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306
           +   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  +   +
Sbjct: 250 IAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLAFL 308

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           ++T+  +    +  +   Y +  +    +L IA
Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|115376606|ref|ZP_01463837.1| DNA polymerase III, delta subunit superfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366411|gb|EAU65415.1| DNA polymerase III, delta subunit superfamily [Stigmatella
           aurantiaca DW4/3-1]
          Length = 410

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 15/240 (6%)

Query: 89  ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF-----TSVLAISCY 143
              + E      LE +       H +++ ++++   + L K A+         V A    
Sbjct: 140 RVSAPEGDASALLELLQKGLPKGHALVLAASDVDAKSALLKFAKDEGWFIERKVAA---- 195

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
               + L ++  E L   +K +   A + L   +GG+    ++EL+KL+ Y      I  
Sbjct: 196 RHKDLDLSEIAREFLAPFKKKLGAGALEQLKERVGGNIRLLQSELEKLAIYANG-ATIEA 254

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             V  ++         E+  +  +  +  A+  A+  +     +  LL       + L +
Sbjct: 255 ADVALLVHHAREEEFFELSESIQKRDLRGALDYAEDAMGQGTHALQLLGAVASIIRGLLE 314

Query: 264 IH-----IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
                    +     SF+    +    I    +     +   W   L  +   + + R  
Sbjct: 315 NRERLGLYAQGAVPRSFDDFKARLFPKIEQEAKAAKGRAPHPWAAFLSMQAAARYERREL 374


>gi|313885823|ref|ZP_07819566.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924727|gb|EFR35493.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 349

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 32/279 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + YG +   I  L     +N          LVV    E          +  + S+F+
Sbjct: 19  PLVLGYGEESYYINRLEELVVENYIPQEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++I++ +    KK       ++ K      +I  +    +  TL  +        A  
Sbjct: 77  PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129

Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183
               N   L   +          +  L              ++ +A   L+  +G D   
Sbjct: 130 --KKNAQALKSQVVLIESTPVRRDNELREAMVQMAEGLGLQLAPQAISTLIERVGYDLET 187

Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241
             +ELQKL+        LI+   V+ ++  +      +++NA  + K   A+ +A     
Sbjct: 188 LYSELQKLAIPAKGAGGLISRAMVQQVVSKSRKYGPYDLLNAVQRRKDDEALQIALAMAE 247

Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
              + P   ++      F  L   H +   S  + ++ +
Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286


>gi|221194646|ref|ZP_03567703.1| DNA polymerase III, delta subunit [Atopobium rimae ATCC 49626]
 gi|221185550|gb|EEE17940.1| DNA polymerase III, delta subunit [Atopobium rimae ATCC 49626]
          Length = 320

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 75/220 (34%), Gaps = 5/220 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++  G D+    +++ + KK ++      F+L       +  +I    + + +  +  
Sbjct: 7   PAYLAVGPDELKRNKMVERLKKRLNE-LFSAFNLDEFTGSTV--DIDVLVSALQTMPMGD 63

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            ++I+++       K   + +   +        +++ +  + +   L K   K      +
Sbjct: 64  SRRIVILREADKLSKAASEVVILYLENPNPTTTLLLTAQTLARTTRLYKAVAKIGEKSVV 123

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            C       L   +++        I   A Q L+  +G        +++ L++       
Sbjct: 124 LCASMKPRELAPYVQKLAASYGLVIDFSAAQELVDRVGDSTTMLDAQVKTLAALSDGQP- 182

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           IT   V+  I     +     +++     +  ++ L +  
Sbjct: 183 ITTSFVEQHIARVAEVKPWTFLDSLSARNLRRSLELYEIL 222


>gi|154174195|ref|YP_001407997.1| DNA polymerase III subunit delta [Campylobacter curvus 525.92]
 gi|112803307|gb|EAU00651.1| DNA polymerase III, delta subunit superfamily [Campylobacter curvus
           525.92]
          Length = 332

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 111/318 (34%), Gaps = 30/318 (9%)

Query: 21  HFVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
              F+ +G+D+  I     E++N +  + +      F          + + +     I+ 
Sbjct: 16  RNYFLLFGADEYQIELYGKEILNLYCTSDANVLSVYFD---------EYDFARTKAHISE 66

Query: 77  TSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKIAEK 133
            SLF  K ++ I+ +     K L  L     K+  N  +    ++ ++K     +KI E 
Sbjct: 67  PSLFGGKNVLHIKSDKRIPGKELKELVAACQKDANNCFLFEFYEA-DMKLALEAQKIFEP 125

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             +       PD     + L+         +I+K A   L      +   + +EL KL+S
Sbjct: 126 NFARFFKPSSPDEA---VMLLSRQAGKIALNITKNALYELYFIHNENLYLAASELNKLAS 182

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINA-TIQGKIYNAIMLADFFLASKMPSHALLH 252
               DI I +  V+ ++     +  ++  N       I       +   +       LL+
Sbjct: 183 L---DIHIEQDDVRRLVFGLGAVNFDDFFNKFISLKDIRGDFFAYEQDPSFNE--ILLLN 237

Query: 253 GFLQKFQLLEKIHIIKECSNI-SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
              + F  L K+H+  + +     +  I       I    N+L+      N    R+   
Sbjct: 238 SLYKAFFRLFKLHLYIKINGKFDVKDAIGYAPPPNI---ANMLKTQSLSLNLKAYRQIFT 294

Query: 312 KIDHRIHLARKKKYLEKN 329
            ++      +    ++KN
Sbjct: 295 ALNLAELELKTNPKIDKN 312


>gi|55822688|ref|YP_141129.1| DNA polymerase III subunit delta [Streptococcus thermophilus
           CNRZ1066]
 gi|55738673|gb|AAV62314.1| DNA polymerase III delta subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 344

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 120/339 (35%), Gaps = 29/339 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G   +   +F K I     D     F +   +  + + +       + S 
Sbjct: 17  KITVLAGEDLGQYSQAKEKFLKQIGFDSSDLTYSYFDMSETDYQDAELD-------LESM 69

Query: 78  SLFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTL 127
             F+ +K+++ ++ +          ++K L  LE  +   +    +++ +  ++     L
Sbjct: 70  PFFADEKVVIFDHFADMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRL 129

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            K+ ++   VL  +   D +  L    ++       +  K   + LL     D    +  
Sbjct: 130 VKLLKRDALVLEANSLKDTE--LRTYFQKQAHQEGLAFDKGVFEELLVKSSFDFSDIQKN 187

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L  L  Y   +  I+ Q + + I  +    I ++    ++G+I +   L           
Sbjct: 188 LAFLKGYK-TEGNISSQDITEAIPKSLQDNIFDMTQLLLRGQIQDVRELVHDLRLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F+   ++ ++      S ++I+        + + P +        R  + 
Sbjct: 247 IKLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSLSDYLSRKVNPFQVRYAIRDSRHLSV 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             ++ T+  +    +  +     +  ++   +L IA  +
Sbjct: 306 AFLKTTIKTLVETDYQIKTGTLDKDYLLDLALLKIASNS 344


>gi|195953203|ref|YP_002121493.1| DNA polymerase III delta [Hydrogenobaculum sp. Y04AAS1]
 gi|195932815|gb|ACG57515.1| DNA polymerase III delta [Hydrogenobaculum sp. Y04AAS1]
          Length = 323

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 119/310 (38%), Gaps = 21/310 (6%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           ++I+K      L+H V   YG D   I       K+                A E+  + 
Sbjct: 6   EYIKKDNSLDNLTHTVV--YGKDIYFIQYFEQLIKQKYDTKT--------YWADEL--DY 53

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK-KNNT 126
               N I S ++F+KK +I+I+N +     L       IK   N II  +  ++  K+  
Sbjct: 54  ENLRNIITSRNIFNKKIVIIIKNFTELLNKLKKENLDFIKKTQNIIIFEEYEDLTEKDIK 113

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +I     ++L          +L  LI++        ++++    LL  +G D +  +N
Sbjct: 114 AVQIILGDINILT--SKQKKPDYLKSLIQKKFKKEGIDLNQDIINELLDTIGTDSLNLKN 171

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           E  KL     + + IT + +   +          I++A I+  I  A+ +    +     
Sbjct: 172 ETDKLLVLA-KSVPITRETLSRALVKEPKDEAFSIVDALIKQDIKKALSIFYDNIKLGQH 230

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
               L    ++F        +    N+SF+++ +    +  P ++NIL + L I NK+ +
Sbjct: 231 PLVTLGFMQKQF----INMYLAFKMNVSFDEVCKILNIS-HPFQKNILSKQLSIVNKDKL 285

Query: 307 RETLHKIDHR 316
              +  +   
Sbjct: 286 FSIVKALQRA 295


>gi|326407120|gb|ADZ64191.1| DNA polymerase III subunit delta [Lactococcus lactis subsp. lactis
           CV56]
          Length = 334

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 107/304 (35%), Gaps = 30/304 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           + + +G  + L+ EL NQ    ++    D  S    +      +++    ++ S   FS 
Sbjct: 18  ILVIFGESRELVGELKNQLLTEVNFEPTD-LSQAYYDLTPSNSDLA--LEDLESLPFFSD 74

Query: 83  KKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE 132
            +++++ENL    + +K VLD       E  +        +++I   ++     + K  +
Sbjct: 75  SRLVILENLVNLTTAKKSVLDEKQLKRFENFLDDPPETTQLVLILYGKLDSRLKVVKKLK 134

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK---EAKQILLANLGGDRIASRNELQ 189
              ++L           L     + L+     IS        ++ A    +    +  + 
Sbjct: 135 AKATLL-------EAQELKS---QELIQYFSRISPLPKVVLSLIAAKSNDNFSVMKQNID 184

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            + +Y L    +T   V+ ++  +    I  + +   +GKI  A  L             
Sbjct: 185 LVQTYVLG-REVTLDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIK 243

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +L      ++L  ++ +  +       + +   +  + P    +  + +R  N   ++  
Sbjct: 244 ILAILTNSYRLYLQVKL-FQAKGWQENQQVAFLK--MHPYPVKLANQLVRKLNVKSLKNG 300

Query: 310 LHKI 313
           L  +
Sbjct: 301 LSDL 304


>gi|170782130|ref|YP_001710463.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156699|emb|CAQ01858.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 342

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 108/304 (35%), Gaps = 19/304 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +  G++  L+ +   +  ++I         +  + A             + S SLF++
Sbjct: 30  VVLVSGTEA-LLADRAMRRLRDILTAEDPRIEVSDIEADSYA--PGELIT-LASPSLFAE 85

Query: 83  KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLAI 140
            ++I + N+     + L      + +   N  ++++ +  ++    L  +       + +
Sbjct: 86  PRLIRVVNVEKCSDQFLLDAVAYLEQPADNTYVVLRHAGGVRGKKLLDAVRSGQGGGIEV 145

Query: 141 SCYP---DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C     D++ H  D         ++SI+  A + L+A    D     +  Q+L      
Sbjct: 146 VCAELKKDSEKH--DFAVAEFRAAKRSITPGAVRQLVAAFQDDVSELASACQQLI--SDT 201

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE  V         +    + ++ I G+   A++L    L S      L+  F   
Sbjct: 202 AHEITEVTVDQYYGGRVEINAFAVADSAIAGRSGEALVLLRHALTSGADPVPLIAAFA-- 259

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
                KI  + + S +S       ++  + P + +  +  L++W+   +   +  +    
Sbjct: 260 ----MKIRTMAKVSGVSGASGQLASKLGMAPWQVDRARRDLQLWDDAGLGRAVEALAEAD 315

Query: 318 HLAR 321
              +
Sbjct: 316 AQVK 319


>gi|325688280|gb|EGD30299.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK72]
          Length = 348

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFETA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  + 
Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +++T+  +    +  +   Y +  +    +L IA
Sbjct: 306 AFLKKTMTCLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|323352678|ref|ZP_08087648.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis VMC66]
 gi|322121714|gb|EFX93460.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis VMC66]
          Length = 348

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G         L  
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  E   I  + + + I  T    I ++    ++ KI  A  L             L
Sbjct: 191 LKGYK-ESGQIGLEDIAEAIPKTLQDNIFDLTQLILRQKIDEARSLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306
           +   L +F++  ++ I+ E +  +  +I+        + + P +     +  R  +   +
Sbjct: 250 IAIMLGQFRIFTQVKILAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLTFL 308

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           ++T+  +    +  +   Y +  +    +L IA
Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|289644668|ref|ZP_06476731.1| DNA polymerase III, delta subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289505514|gb|EFD26550.1| DNA polymerase III, delta subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 331

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 106/316 (33%), Gaps = 22/316 (6%)

Query: 12  KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71
            S         + +  G ++ L+   +           HDP     +      +   +  
Sbjct: 3   ASVPPTSAPPRLVLVSGDEELLVSRAVRDVIHAA--RRHDP--QTEIVDRAPGEFTESDV 58

Query: 72  NEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI 130
            ++ S S+F + +++++         + + L   + + + + ++++  + + +N  L + 
Sbjct: 59  VDLASVSMFGELRVVVVRGAQELTDDLREALLAYLARPLDDVVLVVVHSGVVRNRKLAEA 118

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            +   + +  +          D +   +      IS  A + L+  +G D       L++
Sbjct: 119 MKSAGATVVTAARITRPRDRHDFVAAEVRRLGGQISAGAVKALVDAVGSD-------LRE 171

Query: 191 LSSYCLE-----DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           L+  C +        I E  V              + +A I G +  A+ +    LA  +
Sbjct: 172 LAMVCDQMVADSGGTINEALVAGYRRGRAEATGFAVADAAIAGDLPEALTVLRQTLAGGV 231

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           P   ++       + L +   +      S  ++ +        ++R+  Q + R W+   
Sbjct: 232 PPVLVVSAMTTGLRDLAR---VAAAGGGSTWELARSLGMPDWKVERS--QRAARGWSDEG 286

Query: 306 VRETLHKIDHRIHLAR 321
           +   +  +       +
Sbjct: 287 LAYAMRAVSAADAAVK 302


>gi|227893370|ref|ZP_04011175.1| possible DNA-directed DNA polymerase III delta subunit
           [Lactobacillus ultunensis DSM 16047]
 gi|227864785|gb|EEJ72206.1| possible DNA-directed DNA polymerase III delta subunit
           [Lactobacillus ultunensis DSM 16047]
          Length = 328

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 115/309 (37%), Gaps = 30/309 (9%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN-ISTFWNE 73
           KN    +   + +  D  L   L   +         + F  +    ++ + + +      
Sbjct: 8   KNTNNDNPHTLIWSEDDFLNDYLAKSYAH------EEQFKDLEHVIVDCESDGLDELIAS 61

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIII-----KNICNHIIIIKSNE-IK 122
           +  +SLFS++K+I+++N         KK    + ++       + + + ++I+ S + I 
Sbjct: 62  LTESSLFSEQKLIMVKNPFFLTAKVPKKFQKQVNDLQKIFENLQELEDVVVIVASYDKID 121

Query: 123 KNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +   L K   K  +V+   I  Y      +  + +  +     +I++ A Q+L+      
Sbjct: 122 RRKKLTKTVLKEFNVVEPKIRSYE-----VGAITKAIIKDEGYTITQSALQLLIERSDQV 176

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                +  QKL      D  ITE+ V   +  +    I  I+ + +      AI   +  
Sbjct: 177 MDTILSNYQKLKM-AAPDNKITERSVMQNVDLSLAQNIFAILESALSKNYQEAIDRLNNQ 235

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK-RNILQESLR 299
           L        LL  F  + +L+  + I+      S  +I+++    + P + +  L+  L 
Sbjct: 236 LREGTSPIQLLAVFENQLELILVVKILA-KRGRSEPQIVKELG--VHPYRVKLALKNRLA 292

Query: 300 IWNKNLVRE 308
           I     +  
Sbjct: 293 IGKLEQLLR 301


>gi|325694054|gb|EGD35972.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK150]
          Length = 348

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFESYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +   +     +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFEAA--ELKEADLRTYFSKEAQVEGLQFTPAAFDQLLLKSG----FQFSEISK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   + +F++  ++ ++ E +  +  +I+        + + P +     +  R  + 
Sbjct: 247 IKLIAIMMGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +++T+  +       +   Y +  +    +L IA
Sbjct: 306 AFLKKTMACLIETDFQIKSGLYDKDYLFDLALLKIA 341


>gi|260887219|ref|ZP_05898482.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC
           35185]
 gi|260863281|gb|EEX77781.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC
           35185]
          Length = 374

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 103/324 (31%), Gaps = 40/324 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G +   I +      + +          +   A ++  +       + +   F  
Sbjct: 38  VYLLAGEEHYYIEKAKAAILERLFPAGEGLRDALEEAAPDMDADA--LIGLLETVPFFVP 95

Query: 83  KKIILIENLS--TEKKVLDC---------------------LEEIIIKNICNHIII-IKS 118
           K ++L+++     EKK                         L  ++        +I + +
Sbjct: 96  KHVVLVQDSPLFREKKRPAADGEEAKAAKGKKGDADKKEERLLHLLADMPDYAYVIFLCA 155

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLAN 176
            +  K     K  E   +VL      D      + D +   L    +   +EA    +  
Sbjct: 156 GKADKRRKAYKTVEAAGAVLD----ADAVRPWEIGDWLAGKLAEIHREFDREAHAYFMGA 211

Query: 177 LGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +      S +    E +KL+ Y   +  I    +  +      +    +++A  +  +  
Sbjct: 212 VSMMHEVSLSYLDKEFEKLALYT-AEKRIGRAELAAVFSGLPEVSSFAMMDAVSEKDVKK 270

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+ L     A  + +  LL   ++  + L +  ++     +  + +    + N    ++ 
Sbjct: 271 ALTLLRRQTADGVYAPVLLALMVRHVRQLWQAKLLL-AQGVRGKALGPSMKLNPFIAEK- 328

Query: 293 ILQESLRIWNKNLVRETLHKIDHR 316
            L  +   +++ +++  +  +   
Sbjct: 329 -LGRASMKFSEPVLKRAMLSLIDA 351


>gi|125623622|ref|YP_001032105.1| DNA polymerase III subunit delta [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492430|emb|CAL97372.1| putative DNA polymerase III, delta subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070388|gb|ADJ59788.1| DNA polymerase III subunit delta [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 334

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 114/325 (35%), Gaps = 27/325 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSLFS 81
           + + +G  K ++ EL +Q    ++    D    +  +  ++  N S    E + S   FS
Sbjct: 18  ILVIFGESKEMVQELKSQLLTFVNFEPTD----LSQSYYDLTPNNSDLALEDLESLPFFS 73

Query: 82  KKKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIA 131
             +++++ENL    + +K +LD       E  +        ++++   ++     + K  
Sbjct: 74  DSRLVILENLVNLTTAKKTILDEKQLKRFENFLDNPSETTQLVLVLYGKLDSRLKVVKKL 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +   ++L           L           + S+ +    ++ A         +  +  +
Sbjct: 134 KAKATLL-------EAQELKTQELIQYFSHETSLPRPVLSLIAAKSNDSFSVVKQNIDLV 186

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +Y L    +T   V+ ++  +    I  + +   +GKI  A  L             +L
Sbjct: 187 QTYALG-REVTVDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIKIL 245

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 ++L  ++ + +E      +++             N L   L++ +       L 
Sbjct: 246 AILTNSYRLYLQVKLFQEKGWQENQQVSYLKMHPYPVKLANQLVRRLQVSSLKKGLADLI 305

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           ++D  I    K    EK  +F  +L
Sbjct: 306 QLDFAI----KTSAAEKAYLFDILL 326


>gi|324990607|gb|EGC22543.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK353]
          Length = 348

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 96/275 (34%), Gaps = 31/275 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++    +L+T KK       L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTSKKRYLTDEELKSFENYLENPADTTCLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
             L+   L +F++  ++ I+ E +  +  +I+   
Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280


>gi|332362763|gb|EGJ40559.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK49]
          Length = 348

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 31/275 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPSDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
             L+   L +F++  ++ ++ E +  +  +I+   
Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDL 280


>gi|228476848|ref|ZP_04061493.1| DNA polymerase III, delta subunit [Streptococcus salivarius SK126]
 gi|228251422|gb|EEK10567.1| DNA polymerase III, delta subunit [Streptococcus salivarius SK126]
          Length = 344

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 97/274 (35%), Gaps = 25/274 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +   +F K I     D     F +   +  + + +       + S  
Sbjct: 18  ITVLAGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70

Query: 79  LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLR 128
            F+ +K+++ ++     + +K  LD      LE      +    ++++ + ++     L 
Sbjct: 71  FFADEKVVIFDHFTDMTTAKKSYLDEKELKRLENYFESPVETTRLVLMSAGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++   VL  S   D    L    ++       +      + LL     D    +  L
Sbjct: 131 KLLKRDAMVLEASPLKD--AELRTYFQKQAHQEGLTFDTGVFEELLIKSNFDFSDVQKNL 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L  Y   +  I+ Q + + I  +    I ++    ++G+I +   L            
Sbjct: 189 AFLKGYK-TEGNISSQDIAEAIPKSLQDNIFDMTQLLLRGQIQSVRELVHDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            L+   L +F+   ++ ++      S ++I+   
Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSL 280


>gi|172041037|ref|YP_001800751.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM
           7109]
 gi|171852341|emb|CAQ05317.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM
           7109]
          Length = 334

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 102/311 (32%), Gaps = 21/311 (6%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTF 70
           ++++K       V +  G+++ L                 +P   V L+           
Sbjct: 9   EQASKKPPAISAVNMIVGAEEFLAERQRFAIVHAARKNAGNPDLPVELHKATNLSEPQ-- 66

Query: 71  WNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             E+ S SLF++ +I++I  ++   K+ +  L+  I       ++I+  +   K    R 
Sbjct: 67  LIELLSPSLFAEDRIVVISGVADCGKETVALLKSAIESPADGVVLILLHS--GKGRNKRL 124

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           + E     + I    P         +E+       S+  E    +L ++G D     + +
Sbjct: 125 VNEWQKLGVRIFPAEPLRPRERRSFVEQEFRSYGVSVGPEVVDRMLDSVGSDLRELASAV 184

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            +L      D  +T   V+        +   +I +  + G+   A+  A   +   +P  
Sbjct: 185 SQLV--ADTDANVTPDAVQRYYQGQAEVTGFDIADLVLAGRQGEAVAAARRAIQLGVPLV 242

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN-ILQESL---RIWNKN 304
            +                +++ + ++    I               L+++L   R W   
Sbjct: 243 LIASALST---------AMRDVARVAGAGRIDPRRDASAFGMAPWKLEKTLRVARQWPPA 293

Query: 305 LVRETLHKIDH 315
            V   +  +  
Sbjct: 294 AVSRGVQLVAQ 304


>gi|125717571|ref|YP_001034704.1| DNA polymerase III subunit delta [Streptococcus sanguinis SK36]
 gi|125497488|gb|ABN44154.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 348

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 31/275 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
             L+   L +F++  ++ I+ E +  +  +I+   
Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280


>gi|317471376|ref|ZP_07930730.1| hypothetical protein HMPREF1011_01078 [Anaerostipes sp. 3_2_56FAA]
 gi|316901127|gb|EFV23087.1| hypothetical protein HMPREF1011_01078 [Anaerostipes sp. 3_2_56FAA]
          Length = 153

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 13/146 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYH----DPFSLVVLNALEIQKNISTFWNEINST 77
            +++FYG +K L+ +  ++ K+ +  +        F     +  EI          I + 
Sbjct: 16  NLYLFYGKEKYLVAQTRDKLKEALIPSGDTMNYSYFEGKKTDIPEI-------LELIQTM 68

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             F+  ++++++     KK  D     + +     I++I  +++ K + + K   K    
Sbjct: 69  PFFNDYRLLVLDQTELGKKSNDDFLNALKEMPETTILLIIEDDVDKRSKIYKYINKEGCA 128

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQK 163
           ++       +  L+  + + L   QK
Sbjct: 129 VSFE--TPKEKDLVLWVAQMLKKEQK 152


>gi|269956995|ref|YP_003326784.1| DNA polymerase III subunit delta [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305676|gb|ACZ31226.1| DNA polymerase III, delta subunit [Xylanimonas cellulosilytica DSM
           15894]
          Length = 339

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 106/327 (32%), Gaps = 18/327 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G ++ L+ E        ++         V L+                S SLF 
Sbjct: 28  PVVLVRGPEE-LLRERAVDGLVALARERDPETEKVELDGTTY--GPGQLQV-AASPSLFG 83

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           + KI+++   +  T++   D L  +   +    ++++  +  +    L  +    +    
Sbjct: 84  EAKIVVVTAADAGTDELYADLLAHVERPDPETAVVVVHGSGQRGKKMLDAVV--ASGAPI 141

Query: 140 ISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
           + C          + +   L   ++    EA + L+  LG D       + +L       
Sbjct: 142 LQCDAITRDADKAEFVARELRTARRRAEPEAVRALIDALGTDLRELAAVVSQLL--ADTS 199

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             I+   V             ++ +A + G    A+ L    LA+      ++     + 
Sbjct: 200 GTISVGVVDRYYGGRVEATGFKVADAAVAGDAGAAVALLRHALATGADPVPMVAALAMRL 259

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
           + L K+  ++     + E  +Q          RN  Q  L+ W    +   +  +     
Sbjct: 260 RTLAKVAALRGGMVTARELGLQD------WQVRNA-QRDLQRWTPESLATAISAVASADA 312

Query: 319 LARKKKYLEKNIIFQTILYIAQTACKN 345
             +         + + +L IA+++ + 
Sbjct: 313 EVKGAGRDPVFAVEKAVLTIARSSTRR 339


>gi|157150921|ref|YP_001450878.1| DNA polymerase III subunit delta [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075715|gb|ABV10398.1| DNA polymerase III, delta chain [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 345

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 94/280 (33%), Gaps = 35/280 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINST 77
            + +  G D G    L  Q  K I     D     F +   +  +++ +       + S 
Sbjct: 17  PLTLLTGDDLGQFELLKEQLLKQIEFNAADLNYALFDMKEADYQQVELD-------LVSL 69

Query: 78  SLFSKKKIILI-----------ENLSTEKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNN 125
             FS +KII++            NLS ++  L   E  +   +    +II +  ++    
Sbjct: 70  PFFSDEKIIILDHFIDITTAKKRNLSDDE--LKSFEAYLEHPVETTKLIIFAEGKLDSKR 127

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            + K+ ++   +         +  L     +         +      LL   G       
Sbjct: 128 RIVKLLKRDAEI--FEASEPKEQDLKSYFSKVAQAENLQFAPTVFDQLLIKSG----FQF 181

Query: 186 NELQKLSSYCLE---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           +E+ K  S+      D  I  + V + I  T    I ++    ++ ++  A  L      
Sbjct: 182 SEISKNLSFLKGYKPDGQIELEDVTEAIPKTLQDNIFDLTQLILKQRVDEARSLVSDLRL 241

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
                  L+   L +F++  ++ I+ E +  +  +I+   
Sbjct: 242 QGEDEIKLIAIMLGQFRIFTQVKILSE-NGRAESQIVSDL 280


>gi|23466010|ref|NP_696613.1| hypothetical protein BL1454 [Bifidobacterium longum NCC2705]
 gi|23326729|gb|AAN25249.1| hypothetical protein with possible DNA binding function
           [Bifidobacterium longum NCC2705]
          Length = 291

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 95/284 (33%), Gaps = 18/284 (6%)

Query: 47  ITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEI- 104
           +       L+ L+A    +     ++E  S SL S   ++ + NL   ++K+ + L    
Sbjct: 1   MKARPDAELIELDATSADQYA---FDEAVSPSLLSDVAVVKLVNLQNADEKLAEALVTYT 57

Query: 105 --IIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
               K+     ++I      +K    + ++ +       +         L  ++ E    
Sbjct: 58  KQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDLKKPDAQLNFVLGE-FEK 116

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
             + +   A Q L++ LGG         ++L  +  +D  +    V   +     +    
Sbjct: 117 RGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC-FDFDDNPMGLDCVNQYLTANPQVTGFA 175

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           + +  ++GK   AI++    +       AL+           K+  I + S +    I Q
Sbjct: 176 VADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALA------MKLRTIAKASAVRAGTISQ 229

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
              K    + +N +   L  W    +   +  +      ++   
Sbjct: 230 AEAKTNPWVLKNAM-RQLGGWTSAGLAHCIRMLAWADEQSKTNG 272


>gi|313665658|ref|YP_004047529.1| DNA polymerase III, delta subunit [Mycoplasma leachii PG50]
 gi|312949414|gb|ADR24010.1| putative DNA polymerase III, delta subunit [Mycoplasma leachii
           PG50]
          Length = 316

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 22/241 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           ++ FY  D  L+    NQ KK I      D + +  L+   I+ + +T ++ + + + FS
Sbjct: 1   MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55

Query: 82  KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            K II+I +            +   L+ LE ++     N+III  + SN+  K   + K 
Sbjct: 56  SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNIIIFVLNSNKFSKKLKIAKY 115

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E   +V  +    D K  +  +I   L    K I       +   L  D     NE+ K
Sbjct: 116 IESSFNVKYL-SLWDEKQTIKYIIN-YLKSKNKIIDINLASQIYNLLPNDLQIITNEINK 173

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       +    +K  +   H   I ++++A I   I   I     ++        L
Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDAFINNNIDKFIKFYHDYILLNDDIIGL 230

Query: 251 L 251
           +
Sbjct: 231 I 231


>gi|323699097|ref|ZP_08111009.1| DNA polymerase III delta [Desulfovibrio sp. ND132]
 gi|323459029|gb|EGB14894.1| DNA polymerase III delta [Desulfovibrio desulfuricans ND132]
          Length = 331

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 105/313 (33%), Gaps = 29/313 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
            ++F+    D  LI     Q  + +  +  D ++L      + +    TFW ++   SLF
Sbjct: 6   RYLFLIC-PDPQLIK---GQIDERLKQSGQDGWALKPFWGDDDEPLPPTFWTDLTIKSLF 61

Query: 81  SKKKIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKSNEIKKNNTL------RKIA 131
            + K +++      K    D L+  +     +   I  ++     K   +      R + 
Sbjct: 62  PQPKALIVRRAHALKADQWDKLDASVRGVGDDVYPIFCLEGEWKAKKAPIPPALSRRNLY 121

Query: 132 EKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +K      +      ++  L D ++        +    A Q L   L  D +A+R EL K
Sbjct: 122 KKARDAGWVWESAGLDQRSLTDFVKAWAAKAGLTFEPGAGQALTMALPTDAVAARLELDK 181

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA--SKMPSH 248
           +     +D ++ ++HV  ++  T  +   ++++A   G+      +    L    K    
Sbjct: 182 MELAAGDDRIVRKEHV-SLVAPTGEMPFFDLMDA--LGRPGAEASVWKRVLDDHDKSAKD 238

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L   +       +++ +      +            +  K+  + + L       +  
Sbjct: 239 QMLFNLIGFLASQARMYWLLAHGGKAAGS-------PFMLQKKAPVAKRL---GARGIAR 288

Query: 309 TLHKIDHRIHLAR 321
            +          +
Sbjct: 289 MIDLAMEAELSLK 301


>gi|119358076|ref|YP_912720.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119355425|gb|ABL66296.1| DNA polymerase III, delta subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 357

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 24/237 (10%)

Query: 11  QKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPF-SLVVLNALEIQKNIST 69
           +K  ++      V+   G+++ L  EL  + +  +  +  D   + ++L   E+   +  
Sbjct: 6   EKKNRDDGEIAPVYFLTGTEEYLKEELTGRIRNTLFPSREDAACNTIILYGPELT--LGD 63

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEE---------IIIKNICNHIIIIKSNE 120
             +  +   +F++KK+I++      KK     ++          ++      ++++ + +
Sbjct: 64  LVSRASEYPMFTEKKLIIVRQFEKIKKTASKEQQKLHEEKYNSYLLNPADFTVLVLDAGQ 123

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD---LIEESLLIGQKSISKEAKQILLANL 177
           I K     K  +K    L +  Y  +   +        +           +A +   A +
Sbjct: 124 IDK-----KDLDKSPF-LQLKKYRKDFPAIKTPDLFASDRAKASGWEFEPDALKAFTAYI 177

Query: 178 GGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
                   +E+QK+  Y  +      IT   V + +  +    I E+  A     + 
Sbjct: 178 QPSAREICHEIQKMILYASDQRQGNKITALDVYECVGISRTYNIFELEKALATKNMR 234


>gi|116512516|ref|YP_811423.1| DNA polymerase III subunit delta [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108170|gb|ABJ73310.1| DNA polymerase III, delta subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 334

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 114/325 (35%), Gaps = 27/325 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE-INSTSLFS 81
           + + +G  K ++ EL +Q    ++    D    +  +  ++  N S    E + S   FS
Sbjct: 18  ILVIFGESKEMVQELKSQLLTFVNFEPTD----LSQSYYDLTPNNSDLALEDLESLPFFS 73

Query: 82  KKKIILIENL----STEKKVLDC-----LEEIIIKNICNH-IIIIKSNEIKKNNTLRKIA 131
             +++++ENL    + +K +LD       E  +        ++++   ++     + K  
Sbjct: 74  DSRLVILENLVNLTTAKKTILDEKQLKRFENFLDNPSETTQLVLVLYGKLDSRLKVVKKL 133

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +   ++L           L           + S+ +    ++ A         +  +  +
Sbjct: 134 KAKATLL-------EAQELKTQELIQYFSHETSLPRPVLSLIAAKSNDSFSVVKQNIDLV 186

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +Y L    +T   V+ ++  +    I  + +   +GKI  A  L             +L
Sbjct: 187 QTYALG-REVTVDDVEKVVPKSLQDNIFALTDLIFKGKIDEARDLVHDLTLQGEDLIKIL 245

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 ++L  ++ + +E      +++             N L   L++ +       L 
Sbjct: 246 AILTNSYRLYLQVKLFQEKGWQENQQVSYLKMHPYPVKLANQLVRRLQVSSLKKGLADLI 305

Query: 312 KIDHRIHLARKKKYLEKNIIFQTIL 336
           ++D  I    K    +K  +F  +L
Sbjct: 306 QLDFAI----KTSAADKAYLFDILL 326


>gi|329116654|ref|ZP_08245371.1| DNA polymerase III, delta subunit [Streptococcus parauberis NCFD
           2020]
 gi|326907059|gb|EGE53973.1| DNA polymerase III, delta subunit [Streptococcus parauberis NCFD
           2020]
          Length = 342

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 35/276 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + I  G D G   ++ +   + I+    D     F L   +  + + +       + S  
Sbjct: 18  ITIVTGEDLGQFSQIKSVLMEKIAYDKDDLTYSYFDLSETDYQDAELD-------LLSLP 70

Query: 79  LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ ++     + +K  L        E  + K + +  +II +  ++     + 
Sbjct: 71  FFADQKVVIFDHFLDLTTAKKNYLKENELKSFESYLEKPMDSTRLIIFAPGKLDGKRRIV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIA 183
           K+ ++   V+           L +   ++           S      + LL     D   
Sbjct: 131 KLLKRDAQVI-------EATQLKEAESKTYFQKYSHHLGLSYDSGVFERLLLKSNDDFSQ 183

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
               +  L SY   +  IT   V + I  +    I ++    +Q K+ +AI L      +
Sbjct: 184 ILKNINFLKSYK-NEGRITLYDVDEAIPKSLQDNIFDLTRFLLQKKVEDAINLVHDLRLT 242

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
                 L+   L +F+L  +I I+K     + ++I+
Sbjct: 243 GEDEIKLIAIMLGQFRLFLQIAILK-GQGKNEQQIV 277


>gi|327473338|gb|EGF18758.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK408]
          Length = 348

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 114/336 (33%), Gaps = 35/336 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +         +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKI--FEATELKEADLRAYFSKEAQAEGLQFAPAAFDQLLLKSG----FQFSEISK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  + 
Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +++T+  +       +   Y +  +    +L IA
Sbjct: 306 AFLKKTMACLIETDFQIKSGLYDKDYLFDLALLKIA 341


>gi|301300787|ref|ZP_07206971.1| DNA polymerase III, delta subunit domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851637|gb|EFK79337.1| DNA polymerase III, delta subunit domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 208

 Score = 56.5 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 10/181 (5%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
             +  I K     L+     +     NEL KL    ++   IT   V  ++  +    + 
Sbjct: 29  EKKVIIEKRTIDRLIQLTNANFSKIMNELSKLIIATVDTKKITISEVDGLVTKSLEQNVF 88

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           ++++     +I  A  L    L  K     +    + +F+LL ++ I+ +  +     I 
Sbjct: 89  DLVDFVRDKRIKEAFELYHELLEQKEEPIKINAILIGQFRLLLQVKIL-QKHSYDQGSIA 147

Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRET---LHKIDHRIHLARKKKYLEKNIIFQTIL 336
              +  + P +  +  ++ R ++ N ++     L +I+ ++  + +   L    +FQ  L
Sbjct: 148 STLK--VHPFRVKLAMQNARKFSNNSLKSAYLGLTEIEEKLKTSSQNPEL----LFQLFL 201

Query: 337 Y 337
            
Sbjct: 202 T 202


>gi|298252529|ref|ZP_06976323.1| DNA polymerase III, delta subunit [Gardnerella vaginalis 5-1]
 gi|297532893|gb|EFH71777.1| DNA polymerase III, delta subunit [Gardnerella vaginalis 5-1]
          Length = 342

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 110/342 (32%), Gaps = 40/342 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L        ++ +  +  D   ++ L+A    +     ++E    SLF 
Sbjct: 13  PVTLVVGGDAYLNELNARTVREKVQESAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68

Query: 82  KKKIILIENLS-TEKKVLDCLEEIII------------KNICNHII------II--KSNE 120
              I++I NL   ++ ++D +E                +N  N+ +      +I      
Sbjct: 69  DGTIVIINNLQQADESLVDAIENFCKQAQNSENNAQNSENGENNFVDSSATWVIARHEGG 128

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +K  + + ++ +   + + +     +   L   I        +SI  +A Q L++ LG  
Sbjct: 129 LKGKSIITRLTKAGANTITVPDLKKDDAKLNF-IMSIFERHNRSIEPQAAQRLVSVLGSK 187

Query: 181 RIASRNELQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
                 EL  L S   +  +D  IT   V         L  +  +          A    
Sbjct: 188 T----GELAALCSQLCFDYDDNPITLDIVDRY------LIADPQVTGFFVADKAVAGHAG 237

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
              LA++      +        L  K+ +I     I     I   E  + P    +    
Sbjct: 238 SAVLAARTAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWALKMAMRQ 296

Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           L  WN   V + L  +       +         + + I+ IA
Sbjct: 297 LAGWNSAGVSQCLQSLAWADEQCKGGSSDANYALEKCIMLIA 338


>gi|297243414|ref|ZP_06927347.1| DNA polymerase III, delta subunit [Gardnerella vaginalis AMD]
 gi|296888661|gb|EFH27400.1| DNA polymerase III, delta subunit [Gardnerella vaginalis AMD]
          Length = 335

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 111/335 (33%), Gaps = 33/335 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L        ++ +  +  D   ++ L+A    +     ++E    SLF 
Sbjct: 13  PVTLVVGGDAYLNELNARNVREKVQKSAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68

Query: 82  KKKIILIENLS-TEKKVLDCLEEIII-----KNICNHII------II--KSNEIKKNNTL 127
              I++I NL   ++ ++D +E         +N  N+ +      +I      +K  + +
Sbjct: 69  DGTIVIINNLQQADESLVDAIENFCKQTQNSENSENNFVDSSATWVIARHEGGLKGKSII 128

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
            ++ +   + + +     +   L  ++        +S+  +A Q L++ LG        E
Sbjct: 129 TRLTKAGANTITVPDLKKDDAKLNFVMS-IFERHNRSVEPQAAQRLVSVLGSKT----GE 183

Query: 188 LQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           L  L S   +  +D  IT   V         L  +  +          A       LA++
Sbjct: 184 LAALCSQLCFDYDDNPITLDIVDRY------LIADPQVTGFFVADKAVAGHAGSAVLAAR 237

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
                 +        L  K+ +I     I     I   E  + P    +    L  WN  
Sbjct: 238 TAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWALKMAMRQLAGWNSA 296

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            V + L  +       +         + + I+ IA
Sbjct: 297 GVSKCLQSLAWADEQCKGGSSDANYALEKCIMLIA 331


>gi|325697128|gb|EGD39015.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK160]
          Length = 348

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  + 
Sbjct: 247 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 305

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +++T+  +    +  +   Y +  +    +L IA
Sbjct: 306 AFLKKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|269794648|ref|YP_003314103.1| DNA polymerase III subunit delta [Sanguibacter keddieii DSM 10542]
 gi|269096833|gb|ACZ21269.1| DNA polymerase III, delta subunit [Sanguibacter keddieii DSM 10542]
          Length = 334

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 109/327 (33%), Gaps = 20/327 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V + +G++  L+   + +          DP                     + S SLF+
Sbjct: 24  PVVLVHGAEGLLVDRAVERLVGLAREV--DP-ETEKTTVQAALYQSGMLSV-LTSPSLFA 79

Query: 82  KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139
           + +I+++E++ +T   ++  +   +     +  ++++    ++    L  I  + +    
Sbjct: 80  EPRIVVVESVEATTDALMTDVIAYLSAPADDVFLVLEHRGGVRGKKMLDAI--RASGAPV 137

Query: 140 ISCYP--DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           ++C P   +   +          G +  S  A + L+  +G D     +   +L      
Sbjct: 138 VTCDPIKKDAEKVAFA-SAEFKRGGRRASAGAVRALVEAVGSDLRELASSCSQL--MADS 194

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  I E  V              + +A I G+   A+ L    L +      ++     K
Sbjct: 195 DRAIDEAAVAKYYGGRVEATGFRVADAAIAGEAGQAVALLRHALDTGADPVPVVAALAMK 254

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + L K+  ++              +  + P + +  ++ L  W    +   +       
Sbjct: 255 LRTLAKVAGMRGRGG-------SAADLGLAPWQVDRARKDLASWTPEGLATAITATAQAD 307

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACK 344
              +         + + +L +A++A +
Sbjct: 308 AEVKGAGRDPVFAVERAVLTVARSAGR 334


>gi|266624975|ref|ZP_06117910.1| putative DNA polymerase III, delta subunit [Clostridium hathewayi
           DSM 13479]
 gi|288863129|gb|EFC95427.1| putative DNA polymerase III, delta subunit [Clostridium hathewayi
           DSM 13479]
          Length = 135

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 21/141 (14%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---HDPFSLVVLNA 60
           I++H F             V++ YG +  L     NQ K  IS      ++ F    L+ 
Sbjct: 8   IKNHSF-----------KPVYLLYGDEAFLKNSYKNQLKNAISGDDTMNYNYFEGKGLDL 56

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120
            E         +  ++   FS+K++I++E+    K   D L   + +      +I   +E
Sbjct: 57  NE-------LISLADTMPFFSEKRLIMVEDSGFFKGASDELVAYLPQMPDTTCMIFVESE 109

Query: 121 IKKNNTLRKIAEKFTSVLAIS 141
           + K + + K  ++      ++
Sbjct: 110 VDKRSRMFKKVKEIGYAAEMA 130


>gi|327458704|gb|EGF05052.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK1057]
          Length = 348

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDMGQFELLKEQFLRQIQFQAGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G         L  
Sbjct: 133 LKRDGKIFEAA--ELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSGFQFSEVSKNLAF 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L  Y  E   I  + + + I  T    I ++    +Q KI  A  L             L
Sbjct: 191 LKGYK-ESGQIGLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARTLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNKNLV 306
           +   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  +   +
Sbjct: 250 IAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSLAFL 308

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           ++T+  +    +  +   Y +  +    +L IA
Sbjct: 309 KKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 341


>gi|288916982|ref|ZP_06411354.1| DNA polymerase III, delta subunit [Frankia sp. EUN1f]
 gi|288351691|gb|EFC85896.1| DNA polymerase III, delta subunit [Frankia sp. EUN1f]
          Length = 353

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 83/268 (30%), Gaps = 7/268 (2%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
                    + +  G ++ L+     +     +        +V     E+    +   + 
Sbjct: 13  VPQPAAPPPLVVVSGDEELLVA-RAVREVLAAARARDPEVEIVDRAPGELTD--ADMID- 68

Query: 74  INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           + +TS+F   +++++   +   + + D L   + + + +  +++  +   KN  L  + +
Sbjct: 69  LGATSMFGGGRVLVVRGAAELPEDLRDALLAYVGRPLDDVTLVVVHSGAVKNRKLVDVMK 128

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  + +  +          D     +       +  A Q LL  +GGD         +L 
Sbjct: 129 KAGAKVIPAAKITRPRDRHDFAVAEIRRLGGRTTDGAIQALLDAVGGDLREIAAVCDQLV 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                D +I E  V              + +A I G +   + L    L        +  
Sbjct: 189 --ADTDGVIDEAAVGRYHRGRAETSGFAVADAIIGGDLAGGLTLLRQALEGGTAPVLITS 246

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQ 280
                 + L ++      S     K + 
Sbjct: 247 AIAGGLRDLARVAAAGGGSKWDIAKALG 274


>gi|268319674|ref|YP_003293330.1| DNA polymerase III delta subunit [Lactobacillus johnsonii FI9785]
 gi|262398049|emb|CAX67063.1| DNA polymerase III delta subunit [Lactobacillus johnsonii FI9785]
          Length = 329

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 116/331 (35%), Gaps = 66/331 (19%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80
            +  G D          F   +   Y +  S   L+ + +          + +    SLF
Sbjct: 17  LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIIIK--NICNHIIIIKSNE-IKKNNTLRK 129
           S +K+++I+N            KK ++ L +I+    ++ + ++ + + E I +   + K
Sbjct: 69  SNQKVVVIKNPFFLMAKVPQKFKKQVEKLTKIVEHLGDLEDVVVFVANYEKIDRRKKISK 128

Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +  +  +V+      Y      +  +I+         I+  A Q+L+         S + 
Sbjct: 129 LLLEHVNVIETTFKPYE-----VSGIIKAISKEEGYQITNMALQVLIQRSDQVLDVSLSN 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             KL +   ED  ITE  + + I  +    I EI+ A    K   A    +  L     +
Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             LL  F  + + L  + ++                               R W+K+ + 
Sbjct: 244 IQLLAIFESQLEFLTCVKVL-----------------------------QNRRWSKDQIT 274

Query: 308 ETLH--------KIDHRIHLARKKKYLEKNI 330
           + L          +++++ L++    L++ I
Sbjct: 275 KELKVNPYRVKLALENKVSLSKLTVLLKQAI 305


>gi|271963806|ref|YP_003338002.1| DNA polymerase III subunit delta-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270506981|gb|ACZ85259.1| DNA polymerase III delta subunit-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 327

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 101/287 (35%), Gaps = 12/287 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G ++ L+ +         +        +  L   +++         ++S SLF 
Sbjct: 12  PVILILGDEE-LLADRAVGEVIAAARATDPATEVYDLIGGKVE--PGEL-TRLSSPSLFG 67

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICN-HIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
            + ++ I +     K+V+  +         +  ++++    +K    +  + +    V+A
Sbjct: 68  DRSVVAIRSAQDLSKEVVSEIVSYAAHPAEDTALVLVHPGGVKGKALVDGVKKAGAHVVA 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           ++        L   ++  L    +SI  +A   LL  +G D         +L+ +     
Sbjct: 128 VTKLTKPAERLAF-VKAELKRAGRSIGADAAAALLDAVGNDLRELAAACSQLA-FDTPGK 185

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I E  V         +    + ++ ++G++ +A+    + LA+      L+       +
Sbjct: 186 TIDEAAVARYHRGRAEVSGFTVADSAVEGRLGDALEQLRWALATGTAPVLLVSALAGGLR 245

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
            L K+       N+   ++         P K + +Q  L  W  + +
Sbjct: 246 SLAKVGGA--PRNLRGGQLASHLGMP--PWKIDRVQRQLNGWGPDGI 288


>gi|159039377|ref|YP_001538630.1| DNA polymerase III, delta subunit [Salinispora arenicola CNS-205]
 gi|157918212|gb|ABV99639.1| DNA polymerase III, delta subunit [Salinispora arenicola CNS-205]
          Length = 326

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 20/295 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79
            + +  G ++ L    + +          D      ++  E Q    T     E+ S SL
Sbjct: 11  PIVLVLGDEELLATRAVTEAVARARSADPD------VDVREYQAGSLTVGEIAEMLSPSL 64

Query: 80  FSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F  ++++++ +     K +   L   +     +  +++      K        +   + +
Sbjct: 65  FGGRRLLILRSGQDARKDLTAALLGYVKNPDPDVQLVVLHLGAAKGKAFADGLKAAGATV 124

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS--SYCL 196
             +         +  + E +       +  A + L+A +G D      EL          
Sbjct: 125 IPAARLRGHRERVAFVREEIRRAGGRCADAAAEALIAAVGNDLR----ELAAACSQLMAD 180

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  I+ + V         +    + +AT+ G +  A+    + L   +    +      
Sbjct: 181 NDGRISPETVSRYYRGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVPIADALA- 239

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
               +  +  +      S  ++          ++R   Q   R W    +   + 
Sbjct: 240 --DGVRTVARVASAGRGSPYQLASTLGMPAWKIERA--QRQSRGWTPEGLVRAMR 290


>gi|296274358|ref|YP_003656989.1| DNA polymerase III delta [Arcobacter nitrofigilis DSM 7299]
 gi|296098532|gb|ADG94482.1| DNA polymerase III delta [Arcobacter nitrofigilis DSM 7299]
          Length = 327

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 108/319 (33%), Gaps = 20/319 (6%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++FYG    L+ +  N    +++        +  +   +   +     N++  +SLF+ 
Sbjct: 18  AYMFYGQSDYLVEKYANLVATSVAAGE----EIEKVYFDDF--DFKYVKNKLLQSSLFAS 71

Query: 83  KKIILIE-NLSTEKKVLDCLEEI--IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           + I+LI+ N    K     L E   I K+       +   + K             SV  
Sbjct: 72  RNILLIKLNKKLNKNETTELIEACNINKDSKVIFACMGDGDFKTMGGYFTTKNNSVSVRM 131

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
            + YP      + ++E             A   L      D   S N+L+KL+   L + 
Sbjct: 132 FTPYPGEA---IQILETEARALGLKYEVSALNHLYFMHRSDLNLSVNDLKKLA--ILNEE 186

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            I+ + V+        + +E+ +   + G++        F L   M    LL        
Sbjct: 187 SISSKLVEIHCFGIGSVSLEDFLFNLLSGQLVK--RDLHFLLEEGMNEINLLTQIGAFLH 244

Query: 260 LLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH 318
            L  I    +     + ++I+       I  K+  L  +++I    L  E  + ++    
Sbjct: 245 QLFMISSYSRTIGTPNPKEILGYIPPQNIWEKKTKL--AIKI-KPELFLELFNFLNDLEL 301

Query: 319 LARKKKYLEKNIIFQTILY 337
             +  K  + N   Q  L 
Sbjct: 302 DLKSSKIPDHNAYIQASLR 320


>gi|308233989|ref|ZP_07664726.1| DNA polymerase III, delta subunit [Atopobium vaginae DSM 15829]
 gi|328944002|ref|ZP_08241467.1| hypothetical protein HMPREF0091_10692 [Atopobium vaginae DSM 15829]
 gi|327491971|gb|EGF23745.1| hypothetical protein HMPREF0091_10692 [Atopobium vaginae DSM 15829]
          Length = 336

 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 106/309 (34%), Gaps = 31/309 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G+D   + E++ + K  +       F+    +A +I K+  T  +      +  
Sbjct: 10  PVYVALGTDTAKMAEIVRRLKLYVQPQMS-FFNCNEWHAADI-KDSQTLLSVFLQMPVCD 67

Query: 82  KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
            +++ +I    +  K V+  + + +     + I+ +    + KN+ L K          I
Sbjct: 68  TRRLAIIYEAEALPKDVIADIIDYLKHPNPSCIVCLCMQRLAKNSKLYKAISAVDPKAII 127

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-------- 192
           +C P         +         S+  +A   L+  +G        +L+ L         
Sbjct: 128 NCEPQTASQAHRTLSVLEKKLNVSVDFDAADELINRVGTSLSVLEKQLEILKHSVSVSST 187

Query: 193 --SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++ ++ + IT+  V   +  T+     E+I+A    +   A+ L +    ++     L
Sbjct: 188 DHAHAVQPLRITKDLVCSHVIRTNAQQPWELIDALAARECARALTLLE--AQAQTSPLYL 245

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L    +      ++  +    N++    +    + +           ++ W  N +R   
Sbjct: 246 LALISK------RLRELICAKNLAARGQLALMSEKVN----------VKSWQVNKLRAAA 289

Query: 311 HKIDHRIHL 319
              +     
Sbjct: 290 DNFEAAELD 298


>gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
           8797]
 gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
           8797]
          Length = 484

 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 104/274 (37%), Gaps = 24/274 (8%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            +I +    +N  S+ SK KI +I+ +    K+  + L + + +   N   I  + E  K
Sbjct: 107 DDIRSLRANVNVRSMRSKYKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNK 166

Query: 124 -NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
             +T+    ++F        Y +    + D +++     Q S++ +A Q++    GG   
Sbjct: 167 LPDTILSRCQRFDFG-----YIEEN-SICDRLKQIAEAEQVSVADDAIQLVARRAGGSMR 220

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            S++   +L S+   +  +T + V  I+       + E+I+A I+ K   A+   D  L 
Sbjct: 221 DSQSIFDQLLSF--GESHLTAESVHRILGTASDERLIELIDALIEQKRDVALTHFDAALN 278

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
           + +  +  +   L   + L          ++      Q T  +I  M R  LQ     W 
Sbjct: 279 AGVQLNEFVDQLLNYLRDL----------SVVATGASQVTLLSISEMNRASLQRQAEAWG 328

Query: 303 KNLVRETLHKIDHR----IHLARKKKYLEKNIIF 332
                     ++         +  +  +E  +I 
Sbjct: 329 IQTCLAAFQILNEARNRMFRASHGRALVELALIR 362


>gi|304439667|ref|ZP_07399569.1| DNA-directed DNA polymerase III delta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371847|gb|EFM25451.1| DNA-directed DNA polymerase III delta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 331

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 20/264 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            ++ YG +  LI   +   K        + F+LV +      K+  +  +   +  + + 
Sbjct: 14  AYLLYGKESLLIENAVEYLKNKYVDKSFEAFNLVNV------KDYESLVSSCETLPVMAN 67

Query: 83  KKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLA 139
           KK+I++ N    +  L  +++ +   K+I ++++ I  +E  K N + +       +   
Sbjct: 68  KKLIIVSNSEEFESNLIDVDKTLEYMKDIPDYVVAIFIDENSKLNKSKKFYKFFKKNKRE 127

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA-------NLGGDRIASRNELQKLS 192
           +     +   +   +          IS      L++       NL    +  +NEL K  
Sbjct: 128 VEFDKVSPQEVTRFVNIYFNRENIEISPSDVNYLISKSAYNSKNLETTLMDLKNELSKFL 187

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           SY      I    +  ++ +     I ++ +A     I  AI           P      
Sbjct: 188 SY----KKIDRSIIDSVLTENIDTNIFKLTDAIFSRDIDIAITEFKNLYDIGEPLQKTFV 243

Query: 253 GFLQKFQLLEKIHIIKECSNISFE 276
              +  +LL     ++E +   +E
Sbjct: 244 LIARSIRLLMGYMKLREKNTPDYE 267


>gi|332300218|ref|YP_004442139.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177281|gb|AEE12971.1| DNA polymerase III, delta subunit [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 349

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 32/279 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + YG +   I  L     +N          LVV    E          +  + S+F+
Sbjct: 19  PLVLGYGEESYYINRLEELVVENYIPQEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++I++ +    KK       ++ K      +I  +    +  TL  +        A  
Sbjct: 77  PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129

Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183
               N   L   +          +  L              ++ +A   L+  +G D   
Sbjct: 130 --KKNAQALKSQVALIESTPVRRDNELREAMIHMAEGLGLQLAPQAISTLIERVGYDLET 187

Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241
             +ELQKL+        LI+   V+ ++  +      +++NA  + K   A+ +A     
Sbjct: 188 LYSELQKLAIPAKSAGGLISRAMVQQVVSKSRKYGPYDLLNAVQRRKDDEALQIALAMAE 247

Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
              + P   ++      F  L   H +   S  + ++ +
Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286


>gi|169628723|ref|YP_001702372.1| hypothetical protein MAB_1633 [Mycobacterium abscessus ATCC 19977]
 gi|169240690|emb|CAM61718.1| Putative DNA polymerase III delta subunit [Mycobacterium abscessus]
          Length = 316

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 105/301 (34%), Gaps = 30/301 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +  G ++ L+   +      +         +  L A ++  +++    E+ S SLF+ ++
Sbjct: 7   LILGDEELLVERAVTSVLHAVRGKAGADIPVNRLRAGQV--DVAELA-ELLSPSLFADER 63

Query: 85  IILIENLS-TEKKVLDCLEEIIIKNICNHIIIIK--SNEIKK--NNTLRKIAEKFTSVLA 139
           +I+IE  +   K  +  +E+          ++++       K    TL+ +     +   
Sbjct: 64  VIVIEAAAEAGKDAVTLIEQAATDLPPGTFLLVQHSGGGRAKALATTLQNLGASVHNCAR 123

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-- 197
           I           D + +      + +  +   I++  +G D       +++L++ C +  
Sbjct: 124 I----TKAAERADFVHKEFRRLGQKVDADVVAIVIDAVGSD-------IRELAAACSQLV 172

Query: 198 ---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  +    V+        +   +I +  + G I  +     + +   +P   L    
Sbjct: 173 SDTDGSVDGAAVRRYHSGRAEVSGFDIADKAVTGDIAGSTETLRWAMQRGVPHVLLADAL 232

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            +    + ++  IK+    +      +      P +    Q+  R W ++ V E +  + 
Sbjct: 233 AEAVHTIARVGPIKQ----NAYAAASELGMP--PWRIEKAQKQARRWTRDAVAEAMRVVA 286

Query: 315 H 315
            
Sbjct: 287 A 287


>gi|328949099|ref|YP_004366436.1| DNA polymerase III subunit delta [Treponema succinifaciens DSM
           2489]
 gi|328449423|gb|AEB15139.1| DNA polymerase III, delta subunit [Treponema succinifaciens DSM
           2489]
          Length = 338

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 110/325 (33%), Gaps = 32/325 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++F G + G   E I   +   S   +    +           I     ++ + SLFS 
Sbjct: 6   VYLFTGPEAGEKNEAIENLRDAASKKNN---GIEQYKYYAADVRIEDIVAQLQNASLFSP 62

Query: 83  KKIILIENLST--EKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
              I + N     +K  ++ L   I   KN  N +++I      + N++ K  E      
Sbjct: 63  ALFISLRNAEQIKQKSDIESLVSWIKASKNSPNTLVLI-----SEENSIDKKIESAVPSS 117

Query: 139 AISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
               + +          +E        SIS +A + +L  +  +  + ++E  +   +C 
Sbjct: 118 HKKIFWEMFENRK-PQWVENFFRKNGFSISPDAVEQILEMVENNTESLKSECSRF-FFCF 175

Query: 197 EDIL-ITEQHVKDIICDTHVLYIEEIINATIQ------GKIYNAIMLADFFLASK-MPSH 248
           E    IT   V+ I+          + ++          +  +++ +     A+K     
Sbjct: 176 EKGTTITSDDVEKILSHNREENAFTLFDSMADISKNPQQRFESSLEILQKIRATKESNGI 235

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ---ESLRIWNKNL 305
           AL+ G    F+ L   H +    N   +  ++ +        +   +   ++ +IW    
Sbjct: 236 ALIAGLTYCFRQLRLWHSLHSDGNSPADSELKSSG----FSGKRNQEKYSKAAKIWTAGT 291

Query: 306 VRETLHKIDHRIHLARKKK-YLEKN 329
               L  +       R+    LE+ 
Sbjct: 292 ASSILALLSATDISIRETGTALEET 316


>gi|293365662|ref|ZP_06612371.1| DNA-directed DNA polymerase III delta subunit [Streptococcus oralis
           ATCC 35037]
 gi|307703609|ref|ZP_07640551.1| DNA polymerase III, delta subunit [Streptococcus oralis ATCC 35037]
 gi|291316030|gb|EFE56474.1| DNA-directed DNA polymerase III delta subunit [Streptococcus oralis
           ATCC 35037]
 gi|307623016|gb|EFO02011.1| DNA polymerase III, delta subunit [Streptococcus oralis ATCC 35037]
          Length = 345

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 124/337 (36%), Gaps = 31/337 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +K
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76

Query: 85  IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I+++++     + +K+ L        E  +        ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136

Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +V  AI      +  L    ++         ++++ + LL   G       +E+QK   
Sbjct: 137 ATVFDAIEP---KEQELRQYFQKWSQKQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +      D +I E+ + + I  T    I ++    +  KI  A  L             L
Sbjct: 190 FLQSYKSDGMIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNL 305
           +   L +F+   ++ I+ E    S  +I+                +  L++S R  +   
Sbjct: 250 IAVMLGQFRTFTQVKILSET-GQSESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAF 307

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
           ++  +  +    +  +   Y +  +  + +L IA  A
Sbjct: 308 LKRAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344


>gi|322517052|ref|ZP_08069937.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322124312|gb|EFX95820.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 344

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 95/274 (34%), Gaps = 25/274 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   +   +F K I     D     F +   +  + + +       + S  
Sbjct: 18  ITVLAGEDLGQYSQAKEKFLKQIGFDPSDLTYSYFDMSETDYQDAELD-------LESMP 70

Query: 79  LFSKKKIILIEN----LSTEKKVLDC-----LEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++ ++     + +K  LD      LE  +   +    +++ +  ++     L 
Sbjct: 71  FFADEKVVIFDHFEDMTTAKKSYLDEKALKRLENYLQSPVETTRLVLMASGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++    L +   P     L    ++          K   + LL     D    +  L
Sbjct: 131 KLLKRD--ALVLEANPLKDAELRTYFQKQAHQEGLIFEKGVFEELLIKSSFDFSDVQKNL 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L  Y   +  I+ Q + + I  +    I ++    ++G+I     L            
Sbjct: 189 AFLKGYK-TEGNISSQDIAEAIPKSLQDNIFDMTQLLLRGQIQGVRELVHDLRLQGEDEI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            L+   L +F+   ++ ++      S ++I+   
Sbjct: 248 KLIAVMLGQFRTYLQVKLLS-AQGKSEQQIVSSL 280


>gi|331703862|ref|YP_004400549.1| hypothetical protein MLC_8420 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802417|emb|CBW54572.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 316

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 22/241 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISI-TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           ++ FY  D  L+    NQ KK I      D + +  L+   I+ + +T ++ + + + FS
Sbjct: 1   MYFFYSEDIFLLN---NQIKKTIKELQQKDQYDV--LSFSLIEDDFNTIYDNVTNLNFFS 55

Query: 82  KKKIILIENL---------STEKKVLDCLEEIIIKNICNHIII--IKSNEIKKNNTLRKI 130
            K II+I +            +   L+ LE ++     N++II  + SN+  K   + K 
Sbjct: 56  SKSIIVISDAYFVTEIKTNFNKNYSLNKLEIMLKNFNPNNVIIFTLNSNKFSKKLKIAKY 115

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            E   +V  +    D K  +  +I+  L    K I       +   L  D     NE+ K
Sbjct: 116 IESNFNVKYL-SLWDEKQTIKYIID-YLKSKNKIIDINLANQIYNLLPNDLQIITNEINK 173

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L++       +    +K  +   H   I ++++  I   I N I L   ++        L
Sbjct: 174 LANL---KSELNIDIIKTNLNKYHNEDIFKLVDTFINNNIDNFIKLYHDYILLNDDIIGL 230

Query: 251 L 251
           +
Sbjct: 231 I 231


>gi|332366019|gb|EGJ43775.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK1059]
          Length = 359

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 35/336 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 31  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 83

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 84  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 143

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +   +     +  L     +         +  A   LL   G       +E+ K
Sbjct: 144 LKRDGKIFEAA--ELKEADLRAYFSKEAQTEGLQFAPTAFDQLLLKSG----FQFSEVSK 197

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I ++    +Q KI  A  L           
Sbjct: 198 NLAFLKGYKESGQICLEDIAEAIPKTLQDNIFDLTQLILQQKIDEARSLVRDLALQGEDE 257

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKNIIPMKRNILQESLRIWNK 303
             L+   L +F++  ++ ++ E +  +  +I+        + + P +     +  R  + 
Sbjct: 258 IKLIAIMLGQFRIFTQVKVLAE-NGRAESQIVSDLSDYLGRKVNPYQVKFALKDARSLSL 316

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +++T+  +    +  +   Y +  +    +L IA
Sbjct: 317 TFLKKTMACLIETDYQIKSGLYDKDYLFDLALLKIA 352


>gi|256375344|ref|YP_003099004.1| hypothetical protein Amir_1206 [Actinosynnema mirum DSM 43827]
 gi|255919647|gb|ACU35158.1| DNA polymerase III, delta subunit [Actinosynnema mirum DSM 43827]
          Length = 322

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 23/337 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +SH V +  G ++ L+ E   +     +        L  +   ++         E+ S S
Sbjct: 1   MSHGVQLVIGDEELLV-ERAVRAALVAAREADPQADLTRVRVSDLT--PPELA-ELVSPS 56

Query: 79  LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNT-----LRKI 130
           LF++ ++I +E      K++ D +   +        +++        K        LRK 
Sbjct: 57  LFAEGRVIALEAAQEASKEIADAVVSYVKAPADGVTLVVVHTGGGRSKAAKELPAVLRKA 116

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
             + T    I+  P+ +      +   +          A   L+  +G D         +
Sbjct: 117 GAEVTECPKITRAPERE----AFVRNEIRAAGGKADPAAIGALIEAVGSDLRELAAAASQ 172

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +      D  I E+ V+        +    + +  + G    A+    + L   +P   +
Sbjct: 173 MV--ADTDGKIDEEAVRRYHRGRAEVTGFAVADKAVVGDRAGALEALRWALQLGVPHVLV 230

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                     +  +  +         K+  +      P K    Q  +R W+ + +   +
Sbjct: 231 ADALA---DAVRTVARVSAVGRGDPFKLAGELGMP--PWKIKKAQGQVRGWDGDGLARAM 285

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             +       +         + + +L I +       
Sbjct: 286 TVVADLNAEVKGMAADAGYALERAVLNIVRAHGGTRR 322


>gi|284044288|ref|YP_003394628.1| DNA polymerase III subunit delta [Conexibacter woesei DSM 14684]
 gi|283948509|gb|ADB51253.1| DNA polymerase III, delta subunit [Conexibacter woesei DSM 14684]
          Length = 325

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 95/309 (30%), Gaps = 21/309 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ +G D G + E   + +            + V                  + ++  
Sbjct: 7   PAYLIHGDDHGRLAERRARLRALAERESGSQ-GIEVFEGDAATAEAVATALSAMTFAI-- 63

Query: 82  KKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKN-------NTLRKIAEK 133
            ++ ++++ +   K   +  +E  +     +  ++    E  +          +R     
Sbjct: 64  GRRFLIVDGVERWKAADMRLVEPALKTLPPDTTVVFFGREEGRAKVPDRLIAAVRAAGGD 123

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            ++ L +  +      L              +   A + L+A++G  +     EL+KL+ 
Sbjct: 124 VSTELTVKPW-----DLPKWAVAQARGLGLELHPSAARALVAHVGERQQRLLRELEKLAL 178

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
              E   I  + +++I   +    +  + +A +      A  +             LL+ 
Sbjct: 179 ELGEGARIDLEQIEEITASSAERKVWTLADALVARDGLAATRVYFELREQGERLAGLLYT 238

Query: 254 FLQKFQ-LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
             ++ +  L+     +  +  S  ++ +       P         ++  +   +R  L  
Sbjct: 239 IARRLRDALDV--AQRLETGESASQVRRGLRMP--PKAAERFVADVQRTDVAGLRAALGI 294

Query: 313 IDHRIHLAR 321
           +      +R
Sbjct: 295 VADLELASR 303


>gi|189502748|ref|YP_001958465.1| hypothetical protein Aasi_1447 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498189|gb|ACE06736.1| hypothetical protein Aasi_1447 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 341

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 103/269 (38%), Gaps = 15/269 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V+   G +   I  +I+  + N+       F+L +L   E  ++I+   ++     +  
Sbjct: 20  PVYFLQGEEVYYIDLIIDYLENNLLEESEKIFNLTILYGKE--QSIAQAISQSKQYPVGV 77

Query: 82  KKKIILIENLST----EKKVLDCLEEIIIKNICNHIIIIKS---NEIKKNNTLRK-IAEK 133
           ++++++++         +     L    IK      I+        +    TL K +AE 
Sbjct: 78  ERQVVIVKEAQDLQDLNRDAGQTLLANYIKMPNPTTILAFGYKHKTLSTKTTLSKVLAEH 137

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
              V A   Y DN+  L   I   +      I+++A  +L   +G D +    EL K++ 
Sbjct: 138 AVLVNAKRLY-DNQ--LPAWISNYVTEKGLHIAEKAIFMLQEFIGSDLVRLAKELDKVAL 194

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL--L 251
                  IT+  +++ +  +      E+ +A     +Y A  +    + +     A+  +
Sbjct: 195 NLQPGGKITDNIIQEYVGISKQFNAFELQSAIATRDVYKANQIIFHLIGNNKSQIAIPLI 254

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
                 F  +  +H  ++ S+ +  + +Q
Sbjct: 255 GLLFTFFSKILLLHQARDKSSQALSQALQ 283


>gi|308184995|ref|YP_003929128.1| DNA polymerase III subunit delta [Helicobacter pylori SJM180]
 gi|308060915|gb|ADO02811.1| DNA polymerase III subunit delta [Helicobacter pylori SJM180]
          Length = 340

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKYNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II    + ++  K    ++ + K
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       + +  +       +  ++E        IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICVRFFTPKTWESLKFLQERANALHLDISSHLLNALFEINNEDLGVSFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|42518930|ref|NP_964860.1| hypothetical protein LJ1004 [Lactobacillus johnsonii NCC 533]
 gi|41583216|gb|AAS08826.1| hypothetical protein LJ_1004 [Lactobacillus johnsonii NCC 533]
          Length = 329

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 29/254 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80
            +  G D          F   +   Y +  S   L+ + +          + +    SLF
Sbjct: 17  LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIII--KNICNHIIIIKSNE-IKKNNTLRK 129
           S +K+++++N            KK ++ L +II    ++ + ++ + + E I +   + K
Sbjct: 69  SNQKVVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLSDLEDVVVFVANYEKIDRRKKISK 128

Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +  +  +V+      Y      +  +I+      +  I+  A QIL+         S + 
Sbjct: 129 LLLEHVNVVETTFKPYE-----VSGIIKAISKEERYQITNMALQILIQRSDQVLDVSLSN 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             KL +   ED  ITE  + + I  +    I EI+ A    K   A    +  L     +
Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDKKYQEATQRLEDHLREGASA 243

Query: 248 HALLHGFLQKFQLL 261
             LL  F  + + L
Sbjct: 244 IQLLAIFESQLEFL 257


>gi|33862203|ref|NP_893764.1| DNA polymerase III subunit delta [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634421|emb|CAE20106.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 333

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 125/344 (36%), Gaps = 38/344 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + I +G+D     + I Q             ++  LN  +    I   ++EI +  L  
Sbjct: 2   PIQIIWGNDLNASNKFIKQIIDEKVSKTWGEINISYLNGDD-DNQIKQAFDEILTPPLGD 60

Query: 82  KKKIILIENLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTL------RKIA 131
             ++++++N        +      E+I      N   ++++ + K ++ L      + + 
Sbjct: 61  GSRVVVLKNNPLFTNKNEEIRLKFEKIYQNIPSNTYFLLQNTK-KPDSRLKSTKFIQNLI 119

Query: 132 EKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           +K  ++      PD  +       +E +       + K    +++ ++G D     +EL 
Sbjct: 120 KKDLAIETSFSLPDIWDFEGQKRYLEFTANSMNIHLGKGTADLIIDSVGNDSFNLASELS 179

Query: 190 KLSSYCL------EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           K   Y           LI E  V   I +     I +II+  +Q  I + ++   + L  
Sbjct: 180 KAKIYLSAINNNENKGLILESDVVKKIFNDQQSNIFKIIDHLLQNSISDGLIEIYYLLKK 239

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT--------EKNIIPMKRNILQ 295
             P+  L  G + +     ++H I +  + S E+ + K          K I  +++    
Sbjct: 240 GEPALRLNAGLISQI----RMHTIVKLLHKSGEQDLSKICKLANISNPKRIFFIRKK--- 292

Query: 296 ESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             +   + + + + +  +       +K      N+  + ++ ++
Sbjct: 293 --VNNISSDFLIKLMSNLLDIESSLKKGNNP-INVFAENLVNLS 333


>gi|330839019|ref|YP_004413599.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC
           35185]
 gi|329746783|gb|AEC00140.1| DNA polymerase III, delta subunit [Selenomonas sputigena ATCC
           35185]
          Length = 354

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 103/324 (31%), Gaps = 40/324 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++  G +   I +      + +          +   A ++  +       + +   F  
Sbjct: 18  VYLLAGEEHYYIEKAKAAILERLFPAGEGLRDALEEAAPDMDADA--LIGLLETVPFFVP 75

Query: 83  KKIILIENLS--TEKKVLDC---------------------LEEIIIKNICNHIII-IKS 118
           K ++L+++     EKK                         L  ++        +I + +
Sbjct: 76  KHVVLVQDSPLFREKKRPAADGEEAKAAKGKKGDADKKEERLLHLLADMPDYAYVIFLCA 135

Query: 119 NEIKKNNTLRKIAEKFTSVLAISCYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLAN 176
            +  K     K  E   +VL      D      + D +   L    +   +EA    +  
Sbjct: 136 GKADKRRKAYKTVEAAGAVLD----ADAVRPWEIGDWLAGKLAEIHREFDREAHAYFMGA 191

Query: 177 LGGDRIASRN----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           +      S +    E +KL+ Y   +  I    +  +      +    +++A  +  +  
Sbjct: 192 VSMMHEVSLSYLDKEFEKLALYT-AEKRIGRAELAAVFSGLPEVSSFAMMDAVSEKDVKK 250

Query: 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRN 292
           A+ L     A  + +  LL   ++  + L +  ++     +  + +    + N    ++ 
Sbjct: 251 ALTLLRRQTADGVYAPVLLALMVRHVRQLWQAKLLL-AQGVRGKALGPSMKLNPFIAEK- 308

Query: 293 ILQESLRIWNKNLVRETLHKIDHR 316
            L  +   +++ +++  +  +   
Sbjct: 309 -LGRASMKFSEPVLKRAMLSLIDA 331


>gi|171742870|ref|ZP_02918677.1| hypothetical protein BIFDEN_01986 [Bifidobacterium dentium ATCC
           27678]
 gi|171278484|gb|EDT46145.1| hypothetical protein BIFDEN_01986 [Bifidobacterium dentium ATCC
           27678]
          Length = 342

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 27/344 (7%)

Query: 14  TKNLFLSHFVFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            K    +    I +G D  L    + +     ++           L+ L+A+        
Sbjct: 16  PKTSATNTPFHIVFGGDSYLNEQTVRDQCVAAQRKY-----PDAELIELDAMGADHYA-- 68

Query: 70  FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---IIKNICNHIIII--KSNEIKK 123
            ++E  S SL S + I+ I NL  T++K+ D + E      K+  +  I+I      +K 
Sbjct: 69  -FDEAVSPSLLSDRAIVKIVNLQGTDEKLGDAMVEYCRQACKDPTDCSIVICQHEGGVKG 127

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              + ++ +       +         L  ++ +      + +   A Q L+A LG     
Sbjct: 128 KRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNRRVDPMAAQQLVAVLGEKTGE 186

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
               + +L  +  +D  +    V   +     +    + +  + G+  +AI+     +  
Sbjct: 187 LAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVADQAMAGRSADAIIAMRSAVEQ 245

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
            +   AL+     K + L K   ++          I + E    P         L  W  
Sbjct: 246 GIDPIALIGALAMKLRTLAKASAVR-------AGTISQAEAKTNPWALKNATRQLPGWTS 298

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             +   +  +      ++         + ++I  I+Q    N +
Sbjct: 299 AGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGRINRS 342


>gi|15612233|ref|NP_223886.1| DNA polymerase III subunit delta [Helicobacter pylori J99]
 gi|7674428|sp|Q9ZJY0|Y1168_HELPJ RecName: Full=Protein jhp_1168
 gi|4155765|gb|AAD06742.1| putative [Helicobacter pylori J99]
          Length = 340

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 25/280 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKV----LDCLEEIIIKNICNHIIIIKSNEIKKNNT--------LR 128
              +++++ + +  KK     ++   + + +   N  +II     K + T        + 
Sbjct: 73  GSSLVILKLDFALHKKFKENDINPFLKALERPSHN-RLIIGLYNAKSDTTKYKYTSEIIV 131

Query: 129 KIAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
           K  +K       + +  +       +  ++E        IS      L      D   S 
Sbjct: 132 KFFQKSPLKDEAICVRFFTPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSVSF 191

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L    
Sbjct: 192 NDLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGK 246

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               +L G  + F  L       + + +   K +      
Sbjct: 247 KDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|152990907|ref|YP_001356629.1| DNA polymerase III subunit delta [Nitratiruptor sp. SB155-2]
 gi|151422768|dbj|BAF70272.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 319

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 101/268 (37%), Gaps = 16/268 (5%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           ++  ++F+G +         ++ K  + +     + + L   E     +   N ++  SL
Sbjct: 12  TYNAYLFWGDEP----YFTQKYTKKTADSITPKENRLQLYFDEYDFEAAK--NYLSQASL 65

Query: 80  FSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-IKSNEIKKNNTLRKIAEKFTSV 137
           F    +++I+ + +  KK ++ L ++  KN  + +I  + SNE KK   L  +     S 
Sbjct: 66  FGDTNLLIIKHDKALPKKEIETLIQLCNKNPNSFLIYQLDSNEGKK---LETLFGPKNSA 122

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + +  +  +     + +         +I   + + LLA L  +   +  EL KLS     
Sbjct: 123 VHVRFFKPSLHEAKNELLHYAKEQNINIDSYSIEHLLATLQNNLSLAIQELAKLSLI--- 179

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +  I  + +  ++   + L +E +  + I+ +           L  +     +L GF   
Sbjct: 180 EGPIGSKEIDALVFPLNPLKLEHLYKSIIKKEP--IEEQLQKILEEEQNEMKILLGFENF 237

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKN 285
            Q L   +        S  K I   +  
Sbjct: 238 LQQLFLFYSYIRLHGKSDSKAILGYKLP 265


>gi|227889788|ref|ZP_04007593.1| DNA polymerase III, delta subunit [Lactobacillus johnsonii ATCC
           33200]
 gi|227849652|gb|EEJ59738.1| DNA polymerase III, delta subunit [Lactobacillus johnsonii ATCC
           33200]
          Length = 329

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 29/254 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80
            +  G D          F   +   Y +  S   L+ + +          + +    SLF
Sbjct: 17  LLIQGPDSF--------FNDYLVRNYLNQKSFSELDQVIVDCLEDGLDELMATLTESSLF 68

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIIIK--NICN-HIIIIKSNEIKKNNTLRK 129
           S +KI++++N            KK ++ L +II    ++ +  + +    +I +   + K
Sbjct: 69  SNQKIVVVKNPFFLMAKVPQKFKKQVEKLTKIIEHLGDLEDIAVFVANYEKIDRRKKISK 128

Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           +  +  +V+      Y      +  +I+         I+  A QIL+         S + 
Sbjct: 129 LLLEHVNVIETTFKPYE-----VSGIIKAISKEEGYQITNMALQILIQRSDQVLDVSLSN 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             KL +   ED  ITE  + + I  +    I EI+ A    K   A    +  L     +
Sbjct: 184 YVKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFDEKYQEATQRLEDHLREGASA 243

Query: 248 HALLHGFLQKFQLL 261
             LL  F  + + L
Sbjct: 244 IQLLAIFESQLEFL 257


>gi|206895830|ref|YP_002247358.1| DNA polymerase III, delta subunit [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206738447|gb|ACI17525.1| DNA polymerase III, delta subunit [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 324

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 19/218 (8%)

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + S SLFS  ++I++E L  +K + D +   +     + ++++  +             K
Sbjct: 71  LTSYSLFSPMRVIVVE-LPAKKVIRDAMISAVSSGNLSGVVVVMGDA------------K 117

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 + C P  K   +  I     +       E  + LL    GD  ++  E++KLS 
Sbjct: 118 IPGAEVVECKPLAKKQAVSWIVAEFRLHGVRCDLEVAEQLLDLCDGDLWSAYTEIEKLSL 177

Query: 194 YCLEDILITEQHVKD-IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                  +T +H++  ++          +++A        A +     L        +  
Sbjct: 178 VT---KKVTMEHLQTFVVGSMVKGNYFALMDALQAADEKRAQLEMGSLLEQGEALQQIFV 234

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
              + F L  K       +  +  +           M+
Sbjct: 235 FLYRIFSLAWKSKEFNMDNKAALAQA--AGRSPFFVMR 270


>gi|319790679|ref|YP_004152312.1| DNA polymerase III delta [Thermovibrio ammonificans HB-1]
 gi|317115181|gb|ADU97671.1| DNA polymerase III delta [Thermovibrio ammonificans HB-1]
          Length = 317

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 108/308 (35%), Gaps = 35/308 (11%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
            +++H+ ++       L     + +G +  L      QF K ++   H    +       
Sbjct: 5   QLKTHEALK--LIGKKLPFKKVLIHGEEVYL----TQQFVKKVA-ALHP---VERFFPEA 54

Query: 63  IQKNISTFWNEINSTSLFSKKKI-ILIENLSTEKKVLDCLEEII---IKNICNHIIIIKS 118
           I +     +     +SLF    I +++      K +    E  +        +  I+   
Sbjct: 55  IDE-----FLNFTGSSLFGGSSIPVILYAEELPKTLKKKKERELFLKKLRSLDTFIVAAH 109

Query: 119 NEIKKN-------NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
            E+          + + ++ +   +   +         +  L+ +  L   K +SKE  +
Sbjct: 110 CELDYRTLKGELFSQVEQLCDALLTSERLP-----VNAIYGLLNKKFLQSGKKVSKEVLK 164

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           +L+  +G D    R+E +KL +Y      +T + V+ ++  T       +I    +G   
Sbjct: 165 LLVELVGTDLTELRHEAEKLINY---PGELTPEVVRGLVFPTEKSNAFTLIYPLARGNTK 221

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS-NISFEKIIQKTEKNIIPMK 290
             +   +  LAS      L+     + +   K+ + K+        K +    K +   +
Sbjct: 222 EYLKQLNALLASGNEPLQLIALLQTQARQAVKLALKKQVKLPKEAAKQMALLLKQVGAKR 281

Query: 291 RNILQESL 298
             +L ++L
Sbjct: 282 MLLLLKAL 289


>gi|319760447|ref|YP_004124385.1| DNA polymerase III, delta subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039161|gb|ADV33711.1| DNA polymerase III, delta subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 340

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 124/325 (38%), Gaps = 20/325 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           F++I +G+D  L+ +        I  +Y      + L+       I T   E N   LFS
Sbjct: 19  FIYILFGNDLSLLQDSHEDIINTIKKSYDCEHFRIQLDKNYDWDQIFTLCKETN---LFS 75

Query: 82  KKKIILI-----ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAE 132
           K +I+ I       +S+ KK +  L  +   N+   +II K N+  + N     L K   
Sbjct: 76  KLQILSIHFSQDYPISSLKKNVSTLLSLTKDNLVFILIIYKLNQFIQQNNWIHHLYK--- 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              ++L I+C       L   I+      Q  I   A Q+L +   G+ I  +  L+ L 
Sbjct: 133 --QNILLINCITPEYSRLTMWIQNQAKRMQLVIENLACQLLCSYYEGNTIRLKQILEHLF 190

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                D  +T   VK II D+        I + + G+   A  + +     ++    LLH
Sbjct: 191 L-IYPDGNLTFDRVKTIIVDSSCFNYNHWIESILMGRKQRANRILNQLDYMRLNLKILLH 249

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               +  ++ +I      +  +   ++    K     +R +L +++   +   + + +  
Sbjct: 250 KIQHEILIIIRIKYDL-IAKKNVLSVLFDKYKIYTQYRRIMLSKAMHRLSLMQLHKAIFL 308

Query: 313 IDHRIHLARKKKYLEKNIIFQTILY 337
           +        +  Y+E + I   +L 
Sbjct: 309 LTQMELQYYQN-YMEVSKIHFELLA 332


>gi|157164878|ref|YP_001467163.1| DNA polymerase III subunit delta [Campylobacter concisus 13826]
 gi|112801385|gb|EAT98729.1| DNA polymerase III, delta subunit superfamily [Campylobacter
           concisus 13826]
          Length = 332

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 123/324 (37%), Gaps = 29/324 (8%)

Query: 15  KNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNE 73
            N  LS++ F+ +G+D+  I      F K I   Y  +  +L+ L   E   N +   + 
Sbjct: 11  ANANLSNY-FLLFGADEFQIE----LFGKEILSFYSSEDANLLSLYFDEY--NYAQASSH 63

Query: 74  INSTSLFSKKKIILIENLSTEKKVLDCLEEIII--KNICNHIIIIK--SNEIKKNNTLRK 129
           ++  SLF  K I+ ++  S +K     L+E+I       ++  + +    ++K     +K
Sbjct: 64  LSEQSLFGGKNILYVK--SDKKIPAKELKELISLCSKSHDNYFLFELYEADMKLVFDTQK 121

Query: 130 IAEKFTSVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                          PD  I+L+    +S      +I+K A   L      +   + +EL
Sbjct: 122 AF-GANFARFFKPSNPDEAINLLA---KSSAKIGLNITKNALYELYFTHNENLYLAASEL 177

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ-GKIYNAIMLADFFLASKMPS 247
            KL S    +  I +  VK ++     +  ++  N  +    I N      +        
Sbjct: 178 TKLKSL---NTHIEQDDVKRLVFGLGGINFDDFFNKFMALKDIKN--DFFTYLEDPNFNE 232

Query: 248 HALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
             LL+   + F  L KI+  IK    ++ ++ I   +  +     N+L+ +    + N  
Sbjct: 233 ILLLNSLYKAFFRLFKIYSYIKINGRLNLDEAI-GYQPPVNV--ANLLKANSLKLSLNAY 289

Query: 307 RETLHKIDHRIHLARKKKYLEKNI 330
            E    ++      +    ++K I
Sbjct: 290 LEIFKTLNLAELELKTNTKMDKEI 313


>gi|242278124|ref|YP_002990253.1| DNA polymerase III delta [Desulfovibrio salexigens DSM 2638]
 gi|242121018|gb|ACS78714.1| DNA polymerase III delta [Desulfovibrio salexigens DSM 2638]
          Length = 326

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 93/286 (32%), Gaps = 35/286 (12%)

Query: 29  SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
            D  L+   I + ++    T  D    V     ++      FW+++   +LF   K++++
Sbjct: 12  PDAELLHANIAELQEKYGAT--DYEKKVYWADEDL---PQQFWDDLTLQTLFGSSKVVIL 66

Query: 89  ENLSTEKKVL-DCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISC--Y 143
                 K  + D +++ +     +  + I  +S    K   +  + +K        C  +
Sbjct: 67  RRAHKLKAAVWDNIDKTVASLASSSFLFICLESQWKSKAAPIPAVLKKRK------CWKF 120

Query: 144 PD-----------NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
            D           ++  +   + +        I       L   L  D  A+R EL KL 
Sbjct: 121 ADKQKWFWKSAGLDQKSISGFVGKWARANGLHIDSPVLNALSQALPKDARAARLELDKLD 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                D  I  +HV  +I  +  +     + +  +G   + + +    L +     +++ 
Sbjct: 181 LAAGPDRKILMEHV-GLIAHSEEMDFFAFMRSMSEG--GDPVEIWRRVLTNHSEKDSMIF 237

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
                     +   +      +  ++        +  ++  L + L
Sbjct: 238 MLTASLTREARALWMMIHGEDAEVRL-----PPFVKKQKQALAQRL 278


>gi|111035803|emb|CAL29430.1| DNA polymerase III tau subunit [Wolbachia endosymbiont of
           Onchocerca volvulus]
          Length = 494

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 81/230 (35%), Gaps = 27/230 (11%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC-----YPDNKIHL 150
              + L + + +   +   I+ + EIKK              +   C     Y      +
Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK----------MPITIIARCQRFDLYKIPATKI 180

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
           +  + +        I   A +++  +       +   + +   Y  ++  I+ + V +I+
Sbjct: 181 VGRLNDIAQKENYLIENRALELIAHHCSNSMRNALFLMNQAMLYS-KNGPISTEDVTEIL 239

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE- 269
                  + +++ A +   +  A+++ D   A      ++    LQ  QL+ +  I KE 
Sbjct: 240 GLVDEGIVFDLMEAVLDSDLRKALLVFDKA-AKTANPLSIFENLLQTIQLICRFLITKEV 298

Query: 270 -----CSNISFEKIIQKTEKNIIPMK--RNILQ--ESLRIWNKNLVRETL 310
                       K +   +  I   +  + +L+  +++++ + N +   +
Sbjct: 299 DSSLLEHGKDRIKDLSARKSLIFFSRLWKVLLKGIQAIKVSSCNDIAAEM 348


>gi|218133047|ref|ZP_03461851.1| hypothetical protein BACPEC_00909 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991920|gb|EEC57924.1| hypothetical protein BACPEC_00909 [Bacteroides pectinophilus ATCC
           43243]
          Length = 133

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           KF+ +  KN      V++ YG +  L+++  ++ K+ I     D  +       +I  +I
Sbjct: 2   KFLNEHIKNN-TFKQVYLIYGEETYLVYQYRDRLKQAIIGD--DTMNYSCYEGAKI--DI 56

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
                  ++   F+ +++I++++    K   + L E I        +I   +E+ K N +
Sbjct: 57  KELLTTADTLPFFADRRLIVVQDSGFFKSSTEGLAEYIRSMPEYLHMIFIESEVDKRNRV 116

Query: 128 RKIA 131
            K  
Sbjct: 117 YKAV 120


>gi|154249357|ref|YP_001410182.1| DNA polymerase III delta [Fervidobacterium nodosum Rt17-B1]
 gi|154153293|gb|ABS60525.1| DNA polymerase III delta [Fervidobacterium nodosum Rt17-B1]
          Length = 320

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 81/209 (38%), Gaps = 17/209 (8%)

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKS-----NEIKKN 124
             N   S  LFS+ KI  + +     K        I     N I+++++      ++ K+
Sbjct: 43  LKNASISLGLFSEGKIYDLVDFDEWSKSEKEEFYKIEFPDENVIVLVRTEKAIQKDL-KD 101

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
             + +  +K         + D     +  I +S  +    IS+E    LL  +G D    
Sbjct: 102 KVIVQNFDKPKD------WEDE--KWLQFIMDSAKLIGVEISQEIAHELLEIVGPDEDTI 153

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
            +EL+K+  Y L    I  + ++DI     V  ++E      +G++ +A     F ++++
Sbjct: 154 ISELEKIKIYSLGKPHI--EDIEDITYKRTVSKLDEFAYLLSEGRLDDA-KNLIFEISNE 210

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNI 273
                +L+   + F  L  +    E  + 
Sbjct: 211 YEPVFILYALSKHFIELLNLIATVERKHK 239


>gi|257068896|ref|YP_003155151.1| DNA polymerase III, delta subunit [Brachybacterium faecium DSM
           4810]
 gi|256559714|gb|ACU85561.1| DNA polymerase III, delta subunit [Brachybacterium faecium DSM
           4810]
          Length = 328

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 101/327 (30%), Gaps = 29/327 (8%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M+ +E H               + + +G++  LI +   Q  + ++       ++  L+ 
Sbjct: 1   MSDVEWHSVALAP---------IVLVHGTET-LIADRAVQRLRGLAREADPSVAVHELSG 50

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSN 119
             +     T   ++ S SLF + + +L+  L +    ++  L + +     +  +++   
Sbjct: 51  DAL--GPGTL-GQVASPSLFGEPRFVLVPELQAAPDSLVGELLDYLKTPEQDVTLVLVHR 107

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
              +   L    +K       +            +       Q+ I  EA   L+   G 
Sbjct: 108 GGNRGKKLLDALKKAGVPRVDASPVKRAGDKQTFVAAEFARAQRRIQPEALIALVDAFGT 167

Query: 180 DR----IASRNELQKLSSYCLED-ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
           D       SR  ++  +    E    ++   V  +           + +A I G+   A+
Sbjct: 168 DLAELAAISRQLIEDTTPEPGEQPAQVSVADVHALTAGRVESTAFAVADAAIAGREQEAL 227

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL 294
            L      +      ++     K + L K+         +     +        ++   L
Sbjct: 228 QLLQQAQLAGADPVPIVAAIASKMRSLAKV--------TAPGAGPRSLGMPDWMLR--NL 277

Query: 295 QESLRIWNKNLVRETLHKIDHRIHLAR 321
               R WN   +   +  +    H  +
Sbjct: 278 SREARNWNDRSLARAIEAVARADHEVK 304


>gi|306822686|ref|ZP_07456064.1| DNA-directed DNA polymerase III delta subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|304554231|gb|EFM42140.1| DNA-directed DNA polymerase III delta subunit [Bifidobacterium
           dentium ATCC 27679]
          Length = 342

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 113/344 (32%), Gaps = 27/344 (7%)

Query: 14  TKNLFLSHFVFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
            K    +    I +G D  L    + +     ++           L+ L+A+        
Sbjct: 16  PKTSATNTPFHIVFGGDSYLNEQTVRDQCVAAQRKY-----PDAELIELDAMGADHYA-- 68

Query: 70  FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---IIKNICNHIIII--KSNEIKK 123
            ++E  S SL S + I+ I NL   ++K+ D + E      K+  +  I+I      +K 
Sbjct: 69  -FDEAVSPSLLSDRAIVKIVNLQGADEKLGDAMVEYCRQACKDPTDCSIVICQHEGGVKG 127

Query: 124 NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIA 183
              + ++ +       +         L  ++ +      + +   A Q L+A LG     
Sbjct: 128 KRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNRRVDPMAAQQLVAVLGEKTGE 186

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
               + +L  +  +D  +    V   +     +    + +  + G+  +AI+     +  
Sbjct: 187 LAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVADQAMAGRSADAIIAMRSAVEQ 245

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
            +   AL+     K + L K   ++          I + E    P         L  W  
Sbjct: 246 GIDPIALIGALAMKLRTLAKASAVR-------AGTISQAEAKTNPWALKNATRQLPGWTS 298

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             +   +  +      ++         + ++I  I+Q    N +
Sbjct: 299 AGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGRINRS 342


>gi|72161227|ref|YP_288884.1| DNA polymerase III subunit delta [Thermobifida fusca YX]
 gi|71914959|gb|AAZ54861.1| DNA polymerase III, delta subunit [Thermobifida fusca YX]
          Length = 346

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK--SNEIKKNNTLRKI 130
           E+ S SLF  ++++++ +     K    +    +K+  + ++++   +   K    L+  
Sbjct: 79  EVTSPSLFGDRRVVVLRSAQDLTKEPAGVITDYVKDPVDDVVLVLVHAGGAKGKALLQAA 138

Query: 131 AEKFTSVLAISC-YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
            +       I C  P      +  I+       + I+ +A Q LL  +G D         
Sbjct: 139 LQAGAH--RIDCAKPTKASERIAFIKGEFDRAGRKITADAAQALLDAVGTDLREIAAACT 196

Query: 190 KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
           +L      +  +  + V              + +  ++G++  A+    + LA  M    
Sbjct: 197 QLI--ADTEGRVDAEAVARYHRGKAEASGFTVADRAVEGRLAEALEQLRWSLAVGMAPVL 254

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           +        + L    +++    +S  ++ ++ +    P K   L++  R W    V + 
Sbjct: 255 ITSALASAVRGLAV--VVQSSRGLSESELAKQAKVP--PWKLRTLRQQARGWTPRGVAQA 310

Query: 310 LHKIDHRIHLAR 321
           +  +     L +
Sbjct: 311 MRVVAETDALVK 322


>gi|317182496|dbj|BAJ60280.1| DNA polymerase III subunit delta [Helicobacter pylori F57]
          Length = 340

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDA 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  I     I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAICTRFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|33519774|ref|NP_878606.1| DNA polymerase III, delta subunit [Candidatus Blochmannia
           floridanus]
 gi|33504119|emb|CAD83381.1| DNA polymerase III, delta subunit [Candidatus Blochmannia
           floridanus]
          Length = 344

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 120/313 (38%), Gaps = 18/313 (5%)

Query: 20  SHFVFIFYGSDKGLIFE-LINQFKKNISITYH-DPFSLVVLNALEIQKNISTFWNEINST 77
           + F++I +G+D  LI +  IN        +   D F +       +  +    +    +T
Sbjct: 17  TKFIYILFGNDFYLIQDCHINILNTIKEQSLSIDHFRI----GSSVCFDWDKVFQLCQTT 72

Query: 78  SLFSKKKIILIENLST------EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
            LFS ++I+ ++          +K +   +  +    +   ++I  S  + +  T  K+ 
Sbjct: 73  HLFSTQQILSLQFPKNYPSTYFDKNIPSLISTLTYNKLLFILLIHTSLPMTQYQTWIKLF 132

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           +K  + + ++C       L   +++   +   ++   A Q+L     G+ I  +  LQ L
Sbjct: 133 DK--TGILVNCNTLEYTRLEKWVKKQSQLMNLTLENLACQLLCYYYEGNIILLQQILQHL 190

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           S     D  I+   +K+II D+    +   I + + GK   A  + +    +      LL
Sbjct: 191 SL-IYPDKKISFDRLKNIITDSACFNVNHWIESILLGKKKRANRILEQLKYTNDNLQTLL 249

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETL 310
           +   ++  ++ +I             + +K   N+    +R +L + +R  N   + + L
Sbjct: 250 YKIQREMLVIIQIKYNIIFHGKMLYTLFKKY--NVYTQYRRMLLSQVIRRLNLTQLNKIL 307

Query: 311 HKIDHRIHLARKK 323
             +        K 
Sbjct: 308 ELLVLMELQYHKN 320


>gi|28493348|ref|NP_787509.1| DNA polymerase III delta subunit [Tropheryma whipplei str. Twist]
 gi|28572542|ref|NP_789322.1| hypothetical protein TW389 [Tropheryma whipplei TW08/27]
 gi|28410674|emb|CAD67060.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476389|gb|AAO44478.1| DNA polymerase III delta subunit [Tropheryma whipplei str. Twist]
          Length = 309

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 112/336 (33%), Gaps = 47/336 (13%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G  +    E I   +K I+ +   P   V+         +        S SL  
Sbjct: 5   PLVLLSGKCEYSANEAIASIRKKITDSLSAPEVHVIYADNYSAGELHRLA----SPSLLF 60

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
             ++++++ +       LD     I     +  ++   KS    K    R + E     +
Sbjct: 61  SPRLVIVKQVEECNDIFLDEAMSYIQDPFKDTCVVFRHKSGIRGK----RLLGELRNIGV 116

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE- 197
            I+C PD        + +     +++I++ A  +L+         S +++ +L+ +C + 
Sbjct: 117 EIAC-PDLTPS--RFVSDFFKKEKRNITQAAINLLVE--------SFDDIPELAQFCKQI 165

Query: 198 ----------DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
                        I+E  +  +        +  +++A + G     ++L    L     +
Sbjct: 166 ISDTKGTISAKGTISECEIAFLCWSRPGASVFRVVDAAMNGDEAATVLLLSRLLTEGGSA 225

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L+     + +LL K+   K+ +   ++  + K              + L  W  +   
Sbjct: 226 IPLVAAASARLRLLVKVKYGKKVTAAPWQIALAK--------------KQLAPWTNSSFM 271

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
             +  +       +        ++   +  IA++A 
Sbjct: 272 SCILALHAADRALKSTAGNPNYLVEHAMRLIARSAR 307


>gi|208435142|ref|YP_002266808.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori
           G27]
 gi|208433071|gb|ACI27942.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori
           G27]
          Length = 335

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 11  KAVFLYGEFDFFIHYYIQTISSLFKRNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 67

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II    + ++  K    ++ + K
Sbjct: 68  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 127

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           + +K       + +  +       +  ++E        IS      L      D   S N
Sbjct: 128 LFQKSPLKDEAICVRFFMPKTWESLKFLQERANALHLDISGHLLNTLFETNNEDLSVSFN 187

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 188 DLDKLAVL---NTPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 242

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 243 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 281


>gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
 gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli
           95/1000]
          Length = 521

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 18/233 (7%)

Query: 45  ISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCL 101
             I    P  ++ ++    +  +NI T    +  + +  K K+ +I+ +        + L
Sbjct: 82  TQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKVYIIDEVHQITNEAFNAL 141

Query: 102 EEIIIKNICNHIIIIKSNEIKK-----NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE 156
            + + +   + + I+ + E  +      +  ++   K   +            L  +++ 
Sbjct: 142 LKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYIFKSLGI----------EDLEKILKG 191

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L     +   EA  ++     G    S   L+K+ +Y  +   IT   V  ++   +  
Sbjct: 192 ILDKENIAYDDEAIFLIAKQARGSVRDSETILEKMIAYTADKKHITSGDVIAVVGGNNFS 251

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           ++++  +  I     N            +     ++  ++  +++  I    +
Sbjct: 252 FVKDFFDVMISKDKKNYFQFVKKLFEESVDPRTFINNLIEYMRVVLMIKSGID 304


>gi|315504210|ref|YP_004083097.1| DNA polymerase iii, delta subunit [Micromonospora sp. L5]
 gi|315410829|gb|ADU08946.1| DNA polymerase III, delta subunit [Micromonospora sp. L5]
          Length = 326

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 84/297 (28%), Gaps = 24/297 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79
            + +  G ++ L    + +          D      ++  E Q    T     E+ S SL
Sbjct: 11  PIVLVLGDEELLATRAVTEAVARAREVDPD------VDVREYQAGTLTVGEIAEMLSPSL 64

Query: 80  FSKKKIILIENL-STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKF 134
           F  ++++++ +     K +   L         +  ++++     K       LR      
Sbjct: 65  FGGRRVLVLRSGQDARKDLSTALLAYAKNPDPDVQLVVLHLGGAKGKAFADGLRAAGATV 124

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + +             + + +       + +A   L+A +G D         +L   
Sbjct: 125 VPAVKLK----GDRERAAFVRDEIRRIGGKCTPDAADALVAAVGNDMRELAAACSQLV-- 178

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  I    V         +    + +AT+ G +  A+    + L   +    +    
Sbjct: 179 ADTDGRIGADTVARYYRGRAEVTGFTVADATMVGDVPGALEALRWALHVGVDPVPIADAL 238

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 +  +  +      S  ++ +                + R W    + E + 
Sbjct: 239 A---DGVRTVARVAAAGRSSAFQLAKTLGMPA-WKIEKAQVRA-RGWTPEGLVEAMR 290


>gi|317178459|dbj|BAJ56247.1| DNA polymerase III subunit delta [Helicobacter pylori F30]
          Length = 340

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKTWESLKFLQERANFLHLDISGHLLNALFETNNEDLSV 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|282880248|ref|ZP_06288965.1| DNA polymerase III, delta subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305908|gb|EFA97951.1| DNA polymerase III, delta subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 342

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 93/259 (35%), Gaps = 6/259 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            ++I  G +   I ++ +   +++       F+  ++   ++  N +   +      + +
Sbjct: 25  PIYILMGDESYYIDKIADYIAEHVLQPEQRDFNQNIIFGADV--NAAQIIDLSKGYPMMA 82

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             ++++++     K   + + + +   + + I+++       ++  R I +     +   
Sbjct: 83  DYRVVIVKEAQNLKD-TELIAKYLENPVRSTILVLCHKNGTIDSRKRLIKKADALGIVFE 141

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK-LSSYCLEDIL 200
                +  L + I   L     +I  ++  ++  ++G D     + L K L S       
Sbjct: 142 SKKMRESDLPNFILSYLKNKNIAIDFKSSVMIADHVGADLNRLISVLDKVLISLPENVRE 201

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQKF 258
           I    ++  I  +      E+  A I   I+ A  +  +F  +      ++ L      F
Sbjct: 202 IDPTLIEKQIGVSKDFNAFELRAALINRDIFKANQIIKYFDNNPKAGSIYSFLPLLFNYF 261

Query: 259 QLLEKIHIIKECSNISFEK 277
           Q L   +     ++ +  +
Sbjct: 262 QNLMIAYYAPSKTDNAVAQ 280


>gi|302869315|ref|YP_003837952.1| DNA polymerase III subunit delta [Micromonospora aurantiaca ATCC
           27029]
 gi|302572174|gb|ADL48376.1| DNA polymerase III, delta subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 326

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 84/297 (28%), Gaps = 24/297 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN--EINSTSL 79
            + +  G ++ L    + +          D      ++  E Q    T     E+ S SL
Sbjct: 11  PIVLVLGDEELLATRAVTEAVARAREVDPD------VDVREYQAGTLTVGEIAEMLSPSL 64

Query: 80  FSKKKIILIENL-STEKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKF 134
           F  ++++++ +     K +   L         +  ++++     K       LR      
Sbjct: 65  FGGRRVLVLRSGQDARKDLSTALLAYAKNPDPDVQLVVLHLGGAKGKAFADGLRAAGATV 124

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
              + +             + + +       + +A   L+A +G D         +L   
Sbjct: 125 VPAVKLK----GDRERAAFVRDEIRRIGGKCTPDAADALVAAVGNDMRELAAACSQLV-- 178

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  I    V         +    + +AT+ G +  A+    + L   +    +    
Sbjct: 179 ADTDGRIGADTVARYYRGRAEVTGFTVADATMVGDVPGALEALRWALHVGVDPVPIADAL 238

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                 +  +  +      S  ++ +                + R W    + E + 
Sbjct: 239 A---DGVRTVARVAAAGRGSAFQLAKTLGMPA-WKIEKAQVRA-RGWTPEGLVEAMR 290


>gi|184200955|ref|YP_001855162.1| DNA polymerase III delta subunit [Kocuria rhizophila DC2201]
 gi|183581185|dbj|BAG29656.1| DNA polymerase III delta subunit [Kocuria rhizophila DC2201]
          Length = 337

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 16/302 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  GSD+ ++  +    +  I        S  V +              + S SLF 
Sbjct: 27  PLVLASGSDEYILQRIRETLRDTIRAERG---SCEVTDIAAGDYEPGQLAV-VTSPSLFD 82

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
             K++ ++ L+   E  + D L  +   +    ++   S   +    L  + EK   +  
Sbjct: 83  DPKLVCVQELAGMNEHLLADALAYVANPDPDVTVLWQHSGGNRGKKLLDALKEKALVLDC 142

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
                D        +        K I  +A + L A +G           +L       +
Sbjct: 143 APPKSD--RDKSSFVLGEFRAQNKRIEPDAARALAAAVGTSTAELAAACAQLI--ADGPV 198

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  + V+        +    + +A + G    A+ L    +   +    ++     K +
Sbjct: 199 TVDLELVEKYYGGRVEVTAFRVADAAVAGNAEQALKLWRQAVDVGVDPVPMVATLGSKMR 258

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           L+      +  +      +         P +    Q   R +    V   L  I      
Sbjct: 259 LIALTAGSRGGAGQIARDVGAA------PWQVERAQNEARRFTAQDVTRALQAIAEADAQ 312

Query: 320 AR 321
            +
Sbjct: 313 VK 314


>gi|317177989|dbj|BAJ55778.1| DNA polymerase III subunit delta [Helicobacter pylori F16]
          Length = 340

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDV 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSV 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|149924601|ref|ZP_01912956.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica
           SIR-1]
 gi|149814526|gb|EDM74111.1| DNA polymerase III, gamma and tau subunits [Plesiocystis pacifica
           SIR-1]
          Length = 747

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 114/329 (34%), Gaps = 42/329 (12%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNI 67
           + K+T    L+  +   +G       E  NQ    + I       ++ ++        +I
Sbjct: 49  LGKTTAARILAKCLVCEHGPTP----EPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDI 104

Query: 68  STFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNE------ 120
            +  ++++     +++KI +I+ +    +   + L + + +   +   +  + +      
Sbjct: 105 RSLRDQVHYLPQIARRKIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLP 164

Query: 121 --IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
             + + + L      +  V A          L+  ++  L     ++  E    ++A  G
Sbjct: 165 TILSRVSRL-----DYRRVRA--------ATLVPYLQFILEQEGFAVEPEGL-YVIARCG 210

Query: 179 -GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
            G    S   L K+ ++  +   IT + V  ++       + E++ A +     + +   
Sbjct: 211 DGSVRDSLTLLDKVIAFAHDPKAITGEEVLTVLGQASRYAVAELVQAILDRDAASVLQRF 270

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKI------HIIKECSNISFEKIIQKTE---KNI-- 286
           +   +S      L    LQ  + L  +        + + ++  FE++ ++       +  
Sbjct: 271 EQITSSGSDLMQLAVAILQHLRDLTVLSLTKSRAALLDMNDDLFEQLQRQAGATSPTVVA 330

Query: 287 -IPMKRNILQESLRIWNKNLVRETLHKID 314
               +   + +S+       +   +  ++
Sbjct: 331 QHFDRFARVVDSIEHSRVPRLVIEMGLLE 359


>gi|324993345|gb|EGC25265.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK405]
 gi|324995344|gb|EGC27256.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK678]
 gi|327461618|gb|EGF07949.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK1]
 gi|327489476|gb|EGF21269.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis SK1058]
          Length = 348

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 31/275 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDP----FSLVVLNALEIQKNISTFWNEINSTSLF 80
           I  G D G    L  QF + I     D     F +   N  +++ +       + S   F
Sbjct: 20  ILAGDDLGQFELLKEQFLRQIQFQPGDLNTAIFDMKEANYQDVELD-------LVSLPFF 72

Query: 81  SKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++ +            + L   E  +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFADLTTAKKRYLTDEELKSFENYLENPADTTRLVIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++   +         +  L     +         +  A   LL   G       +E+ K
Sbjct: 133 LKRDGKI--FEATELKEADLRAYFSKEAQAEGLQFAPTAFDQLLLKSG----FQFSEVSK 186

Query: 191 -LSSYCL--EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            L+      E   I  + + + I  T    I  +    +Q KI  A  L           
Sbjct: 187 NLAFLKGYKESGQIGLEDIVEAIPKTLQDNIFNLTQLILQQKIDEARSLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
             L+   L +F++  ++ I+ E +  +  +I+   
Sbjct: 247 IKLIAIMLGQFRIFTQVKILAE-NGRAESQIVSDL 280


>gi|26553497|ref|NP_757431.1| hypothetical protein MYPE450 [Mycoplasma penetrans HF-2]
 gi|26453503|dbj|BAC43835.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 312

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 22/252 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKN------ISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
           + + +G D GL+ E +++   N          + D F  +      +  +     N ++S
Sbjct: 1   MILIHGEDIGLLEEKVSELTNNKFTKIIFDSNFDDIF--LRFTQRNLFDDFDLENNHVDS 58

Query: 77  TSL--FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
                +  KKI+        KK+L+ L+ +          II  + IK+ + +     K 
Sbjct: 59  EKFLIYDFKKILSNSKTEENKKILEMLQFLTDSKKE----IIFLSNIKEPSKVYSKFFKV 114

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            ++  +     NK+ + +   + L     S+ +   + L+  L  D +  +NE++KLS  
Sbjct: 115 MNIKKL-----NKLTMKNYTLKLLKQNNLSLKQNEFEYLIDCLQPDSLLIKNEIEKLSLV 169

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +    +  II +       E+I+     +    +        SK+    + +  
Sbjct: 170 T---ETLNMDTITKIISNDISKNTFELIDNFFNRRYEKIVKQIIALENSKIDFTEIFNIM 226

Query: 255 LQKFQLLEKIHI 266
           + +   L+   +
Sbjct: 227 VSQLFSLKLYRL 238


>gi|146321398|ref|YP_001201109.1| DNA polymerase III subunit delta [Streptococcus suis 98HAH33]
 gi|253752238|ref|YP_003025379.1| DNA polymerase III delta subunit [Streptococcus suis SC84]
 gi|253754064|ref|YP_003027205.1| DNA polymerase III delta subunit [Streptococcus suis P1/7]
 gi|253755998|ref|YP_003029138.1| DNA polymerase III delta subunit [Streptococcus suis BM407]
 gi|145692204|gb|ABP92709.1| DNA polymerase III delta subunit [Streptococcus suis 98HAH33]
 gi|251816527|emb|CAZ52163.1| putative DNA polymerase III delta subunit [Streptococcus suis SC84]
 gi|251818462|emb|CAZ56291.1| putative DNA polymerase III delta subunit [Streptococcus suis
           BM407]
 gi|251820310|emb|CAR46822.1| putative DNA polymerase III delta subunit [Streptococcus suis P1/7]
 gi|292558829|gb|ADE31830.1| DNA polymerase III delta subunit [Streptococcus suis GZ1]
 gi|319758627|gb|ADV70569.1| DNA polymerase III subunit delta [Streptococcus suis JS14]
          Length = 343

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 25/272 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G D G      +   + +     D     F +   +  ++  +       + S   F
Sbjct: 20  VLCGEDIGQYQIAKDLLLRKLHFDAADLGFAYFDMSEADYHQVDLD-------LVSLPFF 72

Query: 81  SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           S +K++++    +L+T+KK       L   E  +   +    ++I +  ++     L K+
Sbjct: 73  SDEKVVILDYFADLTTDKKRHLTDDELKQFEAYLENPVETTRLVILAPGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++    L +   P  ++ L +  ++ ++     +  E  Q LL     D       L  
Sbjct: 133 LKRD--GLVLEANPLKEMDLKNHFQKEIMRLGLQMGGEVFQYLLEKSNFDFAEISKNLAF 190

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L SY      I    +   I  T    I ++    +Q K+ +A  L             L
Sbjct: 191 LQSYK-GKETIEISDIDAAIPKTLQDNIFDLTQLILQSKVDDARNLVCDLRLQGEEEVKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           +   L +F+   ++ I+ E      ++I+ + 
Sbjct: 250 IAIMLTQFRTYLQVQILLE-QGRGEQQIVAEL 280


>gi|228470589|ref|ZP_04055446.1| DNA polymerase III, delta subunit [Porphyromonas uenonis 60-3]
 gi|228307716|gb|EEK16692.1| DNA polymerase III, delta subunit [Porphyromonas uenonis 60-3]
          Length = 349

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 32/279 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + YG +   I  L     +N          LVV    E          +  + S+F+
Sbjct: 19  PLVLGYGEESYYINRLEELVVENYIPKEERTTQLVVYFGSETTA-PEVL-QQAQTFSMFA 76

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            K++I++ +    KK       ++ K      +I  +    +  TL  +        A  
Sbjct: 77  PKRLIVLRDAQDLKKSS-----VLKKPYGIAELIRDATTFAEGTTLLILYHDALPAAA-- 129

Query: 142 CYPDNKIHLMDLI----------EESLLIG--------QKSISKEAKQILLANLGGDRIA 183
               N   L   +          +  L              ++ +A   L+  +G D   
Sbjct: 130 --KKNAQALKSQVALIESAPVRRDNELREAMIQMAKGLDLELAPQAISTLIERVGYDLET 187

Query: 184 SRNELQKLSSYC-LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL- 241
             +ELQKLS        L++   V+ ++  +      +++NA  + +   A+ +A     
Sbjct: 188 LYSELQKLSIPAKGAGGLVSRAMVQQVVSKSRKYGPYDLLNAVQRRRDDEALQIALAMAE 247

Query: 242 -ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
              + P   ++      F  L   H +   S  + ++ +
Sbjct: 248 DEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEAL 286


>gi|15645861|ref|NP_208039.1| DNA polymerase III subunit delta [Helicobacter pylori 26695]
 gi|7674418|sp|O25842|Y1247_HELPY RecName: Full=Protein HP_1247
 gi|2314419|gb|AAD08299.1| predicted coding region HP1247 [Helicobacter pylori 26695]
          Length = 340

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKCDNPDIETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II    + ++  K    ++ + K
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E        IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFIPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLGVSFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  +A+ + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|262038364|ref|ZP_06011741.1| DNA polymerase III, delta subunit family [Leptotrichia goodfellowii
           F0264]
 gi|261747582|gb|EEY35044.1| DNA polymerase III, delta subunit family [Leptotrichia goodfellowii
           F0264]
          Length = 327

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSNEIK 122
           K    F  +++  S+FS +++I++      K +   L+ I   +I    III     + K
Sbjct: 39  KEEEKFLEKVSFNSIFSTEELIVLRQAEKLKDLEKTLDYIANLDIVGKEIIIDYFKEDGK 98

Query: 123 KNNTLRKIAEKFTSVLAISCY---PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
               L K  E+      +  Y    ++   +   I++ L      IS++   +LL  +G 
Sbjct: 99  TGVKLSKKLEELKKNGKLEVYLFPKEDDGEIKKYIKKELG-----ISEKDTAMLLEMIGN 153

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D    +NE++K+  Y L       Q +K I+       I E ++  +  K    I   + 
Sbjct: 154 DPFKVKNEVEKIKIY-LNGDSFNMQEMKKIVSVEKEYRIYETVDKILNNKAAEVIDYLEK 212


>gi|258651779|ref|YP_003200935.1| DNA polymerase III subunit delta [Nakamurella multipartita DSM
           44233]
 gi|258555004|gb|ACV77946.1| DNA polymerase III, delta subunit [Nakamurella multipartita DSM
           44233]
          Length = 329

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 98/331 (29%), Gaps = 23/331 (6%)

Query: 22  FVFIFYGSDKGLIFE---LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            + +  G ++ L+           + I             + +     +  F + + + S
Sbjct: 16  PLVLLTGDEQLLVDRAISRATAAARRIEAGAE------RRDGVAAGLTVGEFSD-LVAPS 68

Query: 79  LFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LF++ ++++I       K +   L       +    ++++     +N  + +   K    
Sbjct: 69  LFAEPRVVVIRGAHEAGKDLAAALIGYTKDPVEGVWLVVQHAGGARNKAIGEALTKA-GA 127

Query: 138 LAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
             ++C    +    +D +   +     + +  A   L+  +G D         +L     
Sbjct: 128 TVVTCNKITRLNERIDFVRAEIRRAGGTTNPAAVTALVEAVGSDLRELAAAADQLV--AD 185

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               + EQ V+        +    + +AT+ G +  A+    + L   +    +      
Sbjct: 186 TGGTVDEQAVRRYHRGRAEVTGFTVSDATMSGDLAGALESLRWALGVGVAPVLVADALA- 244

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE-KNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
               +  +  +      +   I            +   +      W+ + +   +  +  
Sbjct: 245 --DGVRTVAKVSGAKGGNSYAIASALGMPPWKVDRARGMARG---WSTDGLVGGMAIVAE 299

Query: 316 RIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
                +      +  + + ++ +   A K  
Sbjct: 300 LNAAVKGAAVDVEYALERAVIDL-VAARKRR 329


>gi|251793864|ref|YP_003008596.1| DNA polymerase III subunit delta [Aggregatibacter aphrophilus
           NJ8700]
 gi|247535263|gb|ACS98509.1| DNA polymerase III, delta subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 344

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 112/312 (35%), Gaps = 16/312 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++   G D  L+ E  +  ++       D   ++ +N+     + +  +  + S  LF  
Sbjct: 20  LYFLAGEDPLLLEESQDAIQQAEFQQGFDEKWVLEINSST---DWNALFERVQSMGLFFN 76

Query: 83  KKIILIENLSTEKKVLDC-LEEIIIKNICNHIIIIKSNEIKKNNTLRKIA----EKFTSV 137
           K++I+++       +L   L E +     + + I +  ++ K    +       +     
Sbjct: 77  KQLIILDLPENLTALLQKNLLEFVSLLHPDVLPIFRLTKLTKTAENQPWFIAANQYAPEA 136

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCL 196
           + ++C   N   L   +         SI ++A Q+L  +   + +A +  LQ L   Y  
Sbjct: 137 VLVNCQTPNVEQLPRWVSNRAKSLGLSIDEDAVQLLCYSYENNLLALKQALQLLDLLYA- 195

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  ++   V  ++  + V    + ++A + GK   A  +        +    LL    +
Sbjct: 196 -DRKLSFARVNAVVEQSSVFTPFQWVDAILAGKGNRARRILIGLKDEDVQPIILLRTLQR 254

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKN-----IIPMKRNILQESLRIWNKNLVRETLH 311
               L +I   ++ + +       +  +      +   +R +  + ++      +     
Sbjct: 255 DLMTLLEISKPEQPAKLDDPLPTVQLREQFDRLKVWQNRRLLFSQIIQRLTYRKLYLFFQ 314

Query: 312 KIDHRIHLARKK 323
           ++      A+++
Sbjct: 315 QLADVERSAKQE 326


>gi|300778646|ref|ZP_07088504.1| DNA-directed DNA polymerase III delta subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300504156|gb|EFK35296.1| DNA-directed DNA polymerase III delta subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 345

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 99/303 (32%), Gaps = 20/303 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---- 77
            ++ F+G +   I   +   + N        F+  V    +      T + E+ S     
Sbjct: 18  PIYFFHGEEAYFIDVAVKALEHNFLEEDEKAFNQTVTYGKD------TTYQEVLSLARQF 71

Query: 78  SLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            +   K++I+++     +   +    LE  +   + + +++      K ++  +      
Sbjct: 72  PMMGDKQVIIVKEAQDLRFNEEENRILESYVENPVPSTVLVFAHKHKKLDSRKKAAKALD 131

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +          + +L   I +     + + +     +L   LG D     NEL KL   
Sbjct: 132 KAKALFLSESVKESNLPKWISDECAKLKINTAPNISHLLAEYLGNDLSRIANELNKLKMI 191

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLH 252
             E  ++    V++ I  +    I E+  A        A  +A F   +    P   +L 
Sbjct: 192 LKEGEILDGTIVENHIGISKEYNIFELQKALGTKNANAAFKIAHFMGKNPKNNPFVMMLA 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
                F  +     +   +  S + I  +   N   + ++  + + R++        +  
Sbjct: 252 SLYNYFSNVIIYQTM---AGQSPQAIASQMGVNPYFI-KDYAESA-RLYPLKHATRVISI 306

Query: 313 IDH 315
           +  
Sbjct: 307 LRE 309


>gi|67809793|gb|AAY81977.1| DNA polymerase III gamma and tau subunit [Wolbachia pipientis]
          Length = 446

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+ + EIKK             +  I+ C   +  ++ +  
Sbjct: 86  SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 134

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 135 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 193

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 194 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 252

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             N       +  K +      I   +
Sbjct: 253 IDNAVTEHEKNRIKDLSIKRSLIFFSR 279


>gi|332674050|gb|AEE70867.1| DNA polymerase III, delta subunit [Helicobacter pylori 83]
          Length = 340

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLII---GLYNSKSDTTKYKYTSDT 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++ +   S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|152992026|ref|YP_001357747.1| DNA polymerase III subunit delta [Sulfurovum sp. NBC37-1]
 gi|151423887|dbj|BAF71390.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 325

 Score = 53.4 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 112/330 (33%), Gaps = 17/330 (5%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           +F Q+  + L       + +G +      +++ + +          S + L   E     
Sbjct: 5   EFDQRLNQGLP---KAVLVFGEN----EYMMDHYVELYRTKLDAKESALNLYYDEWNFEQ 57

Query: 68  STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
           +   N ++ TSLF    +++++ +    KK LD L  +  +N  N+ + +     K   +
Sbjct: 58  AK--NFLSQTSLFGGTNLVVVKHDKKIPKKELDALVALANRNSDNYFLYLYDGTAKDAKS 115

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           ++         + +  +  N    + ++++        I   A Q L+  L  +     N
Sbjct: 116 MQSAFTDKKGGVWVRLFEANIREGVAILQQKAQRIGLDIDHYALQHLMLLLNNNIALCSN 175

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           EL KL+        +T + +  ++  T  L  E+++      K   A       L     
Sbjct: 176 ELDKLAIL---RTPVTSKDIDRLVYSTAPLATEQLLIDLFNKKPITAT--ITKLLDLGEN 230

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
            + LL         +   H   +         I   +       +   Q +LR+     +
Sbjct: 231 ENDLLRSTQFFVNQIFLFHAYIKLHGHVDSAAILGYKLPKQIEDQKA-QLALRV-KSASL 288

Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            +    +       +K    ++ ++  +IL
Sbjct: 289 LKIFEHLLESEIEMKKAPATQREVLLYSIL 318


>gi|313681802|ref|YP_004059540.1| DNA polymerase iii delta [Sulfuricurvum kujiense DSM 16994]
 gi|313154662|gb|ADR33340.1| DNA polymerase III delta [Sulfuricurvum kujiense DSM 16994]
          Length = 321

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 107/330 (32%), Gaps = 26/330 (7%)

Query: 1   MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60
           M   E  + +Q ++    ++      +G    LI    ++  +          S++ L  
Sbjct: 1   MNRQELDRHLQNNSAPRAMA-----LFGESHFLIDRYAHRLSQIEGA------SVLSLYH 49

Query: 61  LEIQKNISTFWNEINSTSLFSKKKIILIEN-LSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
            E   N +     ++  SLF  + ++++++     K  LD L E++ KN  N  I     
Sbjct: 50  DEYDFNTAKAH--LSQGSLFGDQNLLIVKHEKKLPKAELDTLVELVGKNSDNTFIYCYYG 107

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           +  K       A K +   ++  +         ++ +        +  +A   LL     
Sbjct: 108 DDVKGAD---TAFKGSHTGSVRFFHPFAAEARAIVMQEAQAIGVQLDNQAAFHLLDIHNN 164

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D   + NEL KLS        I  + + + +     + ++  I   I+ K    +     
Sbjct: 165 DLALACNELSKLSIL---GKPIGMKEIDEHVFGLSEIKLDHFIARVIEKK--EFLPSLRH 219

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP-MKRNILQESL 298
            L S      LL         L   +   +   ++   ++   +       +R  L   +
Sbjct: 220 LLESGENEIQLLTAISGFLTQLYLFNTAIKIHGVADSAMVLGYKLPGFVEKERAALSIKI 279

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
              +    +  ++ +       +     ++
Sbjct: 280 ---SPEGYKRGINLLLDTELKMKSTGSPDQ 306


>gi|213422564|ref|ZP_03355629.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 149

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLM 151
               + + L  +      + ++I++ N++ K               + +SC    +  L 
Sbjct: 1   PNAAMNEQLATLSELLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLP 60

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             +          +   A Q+L     G+ +A    L++LS     D  +T   V+  + 
Sbjct: 61  RWVAARAKAQNLQLDDAANQLLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVN 119

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFF 240
           D         ++A + GK   A+ +    
Sbjct: 120 DAAHFTPFHWVDALLMGKSKRALHILQQL 148


>gi|159904314|ref|YP_001551658.1| DNA polymerase III subunit delta [Prochlorococcus marinus str. MIT
           9211]
 gi|159889490|gb|ABX09704.1| DNA polymerase III, delta subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 335

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 118/302 (39%), Gaps = 31/302 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + + +G D G    +I    K I        +L  L+  ++ +       EI +    S
Sbjct: 2   PIHLIWGDDYGSSERVIENLIKEIIDPAWISVNLSRLDGKDLSQANQAL-EEIQTPPFGS 60

Query: 82  KKKIILIENL----STEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRKIA- 131
             ++IL++          ++   LE  + +      +I+ +       +K    L+++  
Sbjct: 61  GGRVILVKRSPFCNGCSAELASKLEISLKQIPLTTHLILNNTNKPDKRLKTTKLLQELIK 120

Query: 132 -----EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
                EK   + A+     +   L  L++++       + +EA  +L+ ++G D     +
Sbjct: 121 SNQASEKKFLLPAVW----DGAGLKALVQKTAKELNLELEEEAILLLIESIGNDSTRLIS 176

Query: 187 ELQKLSS---------YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           EL+KL+          +  + + I+ + V D+I       + EI N  ++ +   AI   
Sbjct: 177 ELKKLTLLESTKNKNAHAHDILQISRETVHDLIQGISTNSL-EIGNCLLKSQWGEAIAKL 235

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
           D  + +  P+  ++     + +    + ++++        I ++   +  P +  ++++ 
Sbjct: 236 DALIDNGEPALRIIATLTGQIRGWLWVSLLEQHGQKDVGFIAKQAGIS-NPKRIYVIRKQ 294

Query: 298 LR 299
           ++
Sbjct: 295 IQ 296


>gi|317052107|ref|YP_004113223.1| DNA polymerase III subunits gamma and tau [Desulfurispirillum
           indicum S5]
 gi|316947191|gb|ADU66667.1| DNA polymerase III, subunits gamma and tau [Desulfurispirillum
           indicum S5]
          Length = 548

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 77/219 (35%), Gaps = 23/219 (10%)

Query: 58  LNALEIQKNIST-------FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           L+ +EI    +           E++      + K+ +I+      ++  +   + + +  
Sbjct: 88  LDVVEIDAASNRGIDSMKTLIEEVDYAPAMGQVKVYIIDEFHMLTREAFNAFLKTLEEPP 147

Query: 110 CNHIIIIKSNEIKKNNT-LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + ++ + ++ K N  +    ++      I      +  ++  +   L     +   +
Sbjct: 148 PHTVFVLATTDLHKVNPTILSRCQRHDF-RRIP-----RDEMVQALAHILGNEGIAFETD 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A QI+     G    + + L ++ SYC E   I+   V +++       +  +  A   G
Sbjct: 202 ALQIIATTSEGCMRDAESILDRVVSYCGE--RISAADVMELVGIATHGMVFGVFQAIAAG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            +   + L +    +      L        QLLE   ++
Sbjct: 260 DLPRILTLIEQANETGADMRQLCR------QLLETTRLV 292


>gi|225630794|ref|YP_002727585.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
 gi|225592775|gb|ACN95794.1| DNA polymerase III, gamma/tau subunit [Wolbachia sp. wRi]
          Length = 533

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+ + EIKK             +  I+ C   +  ++ +  
Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             N       +  K +      I   +
Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324


>gi|42520868|ref|NP_966783.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410608|gb|AAS14717.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 533

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+ + EIKK             +  I+ C   +  ++ +  
Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             N       +  K +      I   +
Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324


>gi|283458048|ref|YP_003362659.1| DNA polymerase III subunit delta [Rothia mucilaginosa DY-18]
 gi|283134074|dbj|BAI64839.1| DNA polymerase III, delta subunit [Rothia mucilaginosa DY-18]
          Length = 347

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 105/322 (32%), Gaps = 21/322 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG ++        + ++    + H     V +NA               S SLF 
Sbjct: 38  PAVMLYGPEEYFASRAAARLRELFR-SIHPEVDRVQINAATYTAGELILH---ASPSLFG 93

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             KII +EN+++   + L      +     + ++I+  +   +   L  +    +  + I
Sbjct: 94  SAKIIEVENVASMSDEFLTDTLAYLNAPEPDIMLILNHSGGNRGKKLIDLV--RSQFVLI 151

Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197
           +C          + +       Q+ I+  A  +L A      +  A+  +          
Sbjct: 152 NCKALKTDREKSEFLAGEFAAAQRPITGGALALLTAAASDTAELAAACQQ-----LLSDV 206

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE+ V         +    + +A I G    A+ L    LA+      +L     +
Sbjct: 207 PGEITEEAVNRYYGGRTEVTAFRVSDAAISGNAPEALRLLRHSLATGTEPIPMLGALAMR 266

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + + ++H ++  +N    ++         P +    Q   R +    +   +  +    
Sbjct: 267 IRNIARVHHVRLSANELAREVGMA------PWQVEQAQRDGRRFTGAQLAHIVQLLADAD 320

Query: 318 HLARKKKYLEKNIIFQTILYIA 339
              + +       + Q +L IA
Sbjct: 321 AQLKGESQDAVYAVEQAVLAIA 342


>gi|262283170|ref|ZP_06060937.1| DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA]
 gi|262261422|gb|EEY80121.1| DNA polymerase subunit III [Streptococcus sp. 2_1_36FAA]
          Length = 345

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 126/364 (34%), Gaps = 48/364 (13%)

Query: 1   MATIESHKFIQKSTKNLFLSH--FVFIFYGSDKGLIFELINQFKKNISITYHDP----FS 54
           M  IE+        KN+ LS+   + +  G D G    L  Q  K I     D     F 
Sbjct: 1   MLAIEA-------IKNIKLSNLPPLTVLTGDDLGQFELLKEQLLKQIEFNAADLNYALFD 53

Query: 55  LVVLNALEIQKNISTFWNEINSTSLFSKKKIILI-----------ENLSTEKKVLDCLEE 103
           +   +  +++ +       + S   FS +KII++            NLS ++  L   E 
Sbjct: 54  MKEADYQQVELD-------LVSLPFFSDEKIIILDHFIDITTAKKRNLSDDE--LKSFEA 104

Query: 104 IIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ 162
            +   +    +I+ +  ++     + K+ ++   +         +  L     +      
Sbjct: 105 YLEHPVETTRLILFAEGKLDSKRRIVKLLKRDAEI--FEASEPKEQDLRSYFSKVAQTEN 162

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLE---DILITEQHVKDIICDTHVLYIE 219
              +      LL   G       +E+ K  S+      D  I  + + + I  T    I 
Sbjct: 163 LQFAPTVFDQLLIKSG----FQFSEISKNLSFLKGYKPDGQIELEDITEAIPKTLQDNIF 218

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           ++    ++ ++  A  L             L+   L +F++  ++ I+   +  +  +I+
Sbjct: 219 DLTQLILKQRVDEARSLVSDLRLQGEDEIKLIAIMLGQFRIFTQVKILS-GNGRAESQIV 277

Query: 280 QK----TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
                   + + P +     +  R  + + +++T+  +    +  +   Y +  +    +
Sbjct: 278 SDLSDYLGRKVNPYQVKFALKDARSLDLSFLKKTMTCLIETDYQIKSGLYEKDYLFDLAL 337

Query: 336 LYIA 339
           L IA
Sbjct: 338 LRIA 341


>gi|229820231|ref|YP_002881757.1| DNA polymerase III, delta subunit [Beutenbergia cavernae DSM 12333]
 gi|229566144|gb|ACQ79995.1| DNA polymerase III, delta subunit [Beutenbergia cavernae DSM 12333]
          Length = 334

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 103/324 (31%), Gaps = 23/324 (7%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G+++ L    + +  +           +  L+A   +         + S SLF 
Sbjct: 24  PVVLVRGTEELLGDRALTRLLEQAREQ-DPGVEVTRLDAAGYE--PGRL-GMLTSPSLFG 79

Query: 82  KKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139
           +++ + I  L    E    D L  +        +++     ++    L  +    +    
Sbjct: 80  ERRHVEILGLENLTEACASDVLAYVDDVAPDVTLVLRHGGGVRGKKVLDAV--TASGAPV 137

Query: 140 ISC----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           ++C    Y  +K   +  + +     ++ +   A Q L+  LG D         +L    
Sbjct: 138 VACDALKYEKDK---VAFVTQEFRRTERRVQGAAVQALVDALGSDLRELAAACAQLV--A 192

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                IT   V         +    + ++ + G    A++L    +A+      L+    
Sbjct: 193 DTTGTITADVVDRYYGGRVEVTGFRVADSAVAGDAGGALLLLRHAIAAGTDPVPLVAALA 252

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
            K + + K+  ++     +    +      +   +R+     L  W    +   +  +  
Sbjct: 253 LKLRTMAKVAAVR-GRGPAALSELGLASWQVDRARRD-----LGGWTPEGLAAAISAVAT 306

Query: 316 RIHLARKKKYLEKNIIFQTILYIA 339
                + +       + + +L IA
Sbjct: 307 ADAEVKGESRSPAFAVERAVLRIA 330


>gi|317014638|gb|ADU82074.1| DNA polymerase III subunit delta [Helicobacter pylori Gambia94/24]
          Length = 340

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I         +  D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKGSNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129
              +++++ + +  KK  +    L    ++   ++ +II     K + T        + K
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSDVIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E     Q  IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANALQLDISSHLLNALFETNNEDLGISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|50955101|ref|YP_062389.1| DNA polymerase III, delta subunit [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951583|gb|AAT89284.1| DNA polymerase III, delta subunit [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 346

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 100/299 (33%), Gaps = 17/299 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G++  L    + Q ++ +     DP   + ++ +      +     + S SLF 
Sbjct: 33  PVVLVSGTESFLADRAVRQLREALRAA--DP--SLEISDVSAADYAAGELLTLASPSLFG 88

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIAEKFTSVLA 139
           + ++I +E +       L      + +     +++++ +  ++    L  I     + + 
Sbjct: 89  EPRLIRVEAVERCSDAFLSETLSYLEEPAEGAVVVLRHAGGVRGKKLLDAIRSGTGNGVE 148

Query: 140 ISCYPDNKIHLMDLI--EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           + C  + K         +       +SIS  A + + +    D        Q+L      
Sbjct: 149 VVC-AELKKDAEKYEFAQAEFARAGRSISPGALRAVTSAFADDLAELAAACQQLL--SDS 205

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              I E  V              + +  + G+   A++     LAS      ++  F  K
Sbjct: 206 AEQIVEATVDKYYSGRMETNAFHVADVALAGRYGEALVTMRHALASGADPVPMVAAFASK 265

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            + + K+   +  S    ++        + P + +  +  L+ W +  +   +  +   
Sbjct: 266 IRTMAKLAGARGGSGQLAQQ------FGLAPWQVDRARRDLQGWAEEDLGRCIEVLAET 318


>gi|308183358|ref|YP_003927485.1| DNA polymerase III subunit delta [Helicobacter pylori PeCan4]
 gi|308065543|gb|ADO07435.1| DNA polymerase III subunit delta [Helicobacter pylori PeCan4]
          Length = 340

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  +     +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCDNPDMETSFFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           V+ +   S   D  IH    I          +E        IS      L      D   
Sbjct: 130 VVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDVYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|296120960|ref|YP_003628738.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           limnophilus DSM 3776]
 gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces
           limnophilus DSM 3776]
          Length = 682

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 16/195 (8%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   + + + +        +  EA +++     G    S++   ++         +T   
Sbjct: 182 NIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVL--AFGHQHVTVAD 239

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V  ++       + E++ A I      A+   D  +   +   AL    +   + L  + 
Sbjct: 240 VHRLLGTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDL--MV 297

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR-IHLARK-- 322
                  I+     + +         + ++     W    +   L  +    I +AR   
Sbjct: 298 TAAGVKGIALLGATESSR--------SRVETQAEAWGLKTISAALQILAEAKIKMARATW 349

Query: 323 -KKYLEKNIIFQTIL 336
            +   E  ++  T+L
Sbjct: 350 GRALTELALVRITLL 364


>gi|268679499|ref|YP_003303930.1| DNA polymerase III delta [Sulfurospirillum deleyianum DSM 6946]
 gi|268617530|gb|ACZ11895.1| DNA polymerase III delta [Sulfurospirillum deleyianum DSM 6946]
          Length = 328

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 12/257 (4%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG+       L  +  + + +         V+   E     +   N ++ +SLF  + 
Sbjct: 20  LLYGACHYQNNFLATEILRLLKVNPD---EKTVMYFDEYAFASAK--NFLSQSSLFGDRN 74

Query: 85  IILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
           I +++ + +   K L+ L ++  KN  ++ I     E KK   + K+ EK      +  +
Sbjct: 75  IFILKSDKTVPTKELEVLIDLCAKNDSSYFIYQYFGEDKKATPMSKLFEKKNEGAFVRLF 134

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
             +    + L++         I + A Q L      D     NE +KL S    +  I  
Sbjct: 135 KADFNEALQLLQNHANALGLLIDRYALQHLYMIHMEDLSLCANECEKLLSL---NKEIHI 191

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQLLE 262
             +  ++     + ++  I   ++ K  +     +  +    M    +++        L 
Sbjct: 192 NDINTLVYGLGSVSMDRFIAKLLEKK--DIKEDFERLVEGDGMDEIRIINAIETYVSQLF 249

Query: 263 KIHIIKECSNISFEKII 279
             H   +       K I
Sbjct: 250 LFHSYVKLHGSFDAKAI 266


>gi|300361491|ref|ZP_07057668.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354110|gb|EFJ69981.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus
           gasseri JV-V03]
          Length = 329

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 29/254 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST---SLF 80
            +  G D          F   +   Y +      L+ + +          + +    SLF
Sbjct: 17  LLIQGPDSF--------FNDYLVRNYLNQKKFTDLDQVIVDCLEDGLDELMATLTESSLF 68

Query: 81  SKKKIILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSNE---IKKNNTLRK 129
           S KKI++++N            KK ++ L +II        I+        I +   + K
Sbjct: 69  SSKKIVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDIVAFVANYEKIDRRKKISK 128

Query: 130 IAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
              +  +V+  A+  Y      +  +I+         I+  A QIL+        A+ + 
Sbjct: 129 FLLEHVNVVETALKPYE-----VSGVIKAISKEEGYQITNMALQILIQRSDQVLDAALSN 183

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             KL +   ED  ITE  + + I  +    I EI+ A        A    D  L     +
Sbjct: 184 YLKLKNIVGEDKRITETLINENIDRSLSENIFEILTAAFNKNYQEATQRLDDHLREGASA 243

Query: 248 HALLHGFLQKFQLL 261
             LL  F  + + L
Sbjct: 244 IQLLAIFESQIEFL 257


>gi|300788523|ref|YP_003768814.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32]
 gi|299798037|gb|ADJ48412.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 102/343 (29%), Gaps = 27/343 (7%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELI--NQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71
           T        + +  G ++ LI E            +      +   L  + +    +   
Sbjct: 2   TAQATAPAPLQLVLGEEELLI-ERAVRETLAAARVMD-----ATAELTRVRVSDLTAPEL 55

Query: 72  NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTL 127
            E+ S SLFS+ ++I++E+     +++ D +   +       ++++        K   +L
Sbjct: 56  AELVSPSLFSEGRVIVLESAQDISQELADAVAAYLKDPADGVVLVVVHTGGGRSKAGKSL 115

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +K  + +               +   +      I       LL  +G D     + 
Sbjct: 116 PTALKKAGAEITECPRLTKPAEREQFVRHEVRRVGGKIDPAGVAALLDAVGSDLRELSSA 175

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +    +    + G    A+    + +   +P 
Sbjct: 176 ATQLV--ADTGGTVDADAVRRYHRGRADVTGFAVAEKAVSGDRAAALESLRWAMQLGVPH 233

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             +          +  I  +      +  ++  +       +++   Q   R WN + + 
Sbjct: 234 VLVADALA---DAVRTIARVSGAGRGNPNQLAGELGMPPWKIRKA--QGQSRGWNPDGLA 288

Query: 308 ETLH---KIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             +    +++  +             + + +L +A  A K + 
Sbjct: 289 TAMRVVARLNAEVKGVAADPGYA---LERAVLEVA--AAKGDR 326


>gi|308062531|gb|ADO04419.1| DNA polymerase III subunit delta [Helicobacter pylori Cuz20]
          Length = 340

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  +     +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSFFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISNHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  +A+ + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|261838570|gb|ACX98336.1| delta subunit of the DNA polymerase III holoenzyme [Helicobacter
           pylori 51]
          Length = 340

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 31/283 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDIETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKHTSDA 129

Query: 137 VLAI---SCYPDNK-----------IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           ++     S   D               L  L +E        IS      L      D  
Sbjct: 130 IVKFFQKSPLKDEAIHARFFTPKAWESLKFL-QERANFLHLDISSHLLNALFETNNEDLS 188

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L 
Sbjct: 189 VSFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLK 243

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                  +L G  + F  L       + + +   K +      
Sbjct: 244 EGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|283456103|ref|YP_003360667.1| DNA polymerase III, subunit delta [Bifidobacterium dentium Bd1]
 gi|283102737|gb|ADB09843.1| DNA polymerase III, delta subunit [Bifidobacterium dentium Bd1]
          Length = 303

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 104/304 (34%), Gaps = 18/304 (5%)

Query: 50  HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEI---I 105
           +    L+ L+A+         ++E  S SL S + I+ I NL  T++K+ D + E     
Sbjct: 12  YPDAELIELDAMGADHYA---FDEAVSPSLLSDRAIVKIVNLQGTDEKLGDAMVEYCRQA 68

Query: 106 IKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163
            K+  +  I+I      +K    + ++ +       +         L  ++ +      +
Sbjct: 69  CKDPTDCSIVICQHEGGVKGKRLVDQLTKAGADKQVVPDLKKADAKLNFVM-QCFDRRNR 127

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            +   A Q L+A LG         + +L  +  +D  +    V   +     +    + +
Sbjct: 128 RVDPMAAQQLVAVLGEKTGELAAMVAQLC-FDFDDDPMGLNRVNQYLDSNPQVTGFVVAD 186

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             + G+  +AI+     +   +   AL+     K + L K   ++          I + E
Sbjct: 187 QAMAGRSADAIIAMRSAVEQGIDPIALIGALAMKLRTLAKASAVR-------AGTISQAE 239

Query: 284 KNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
               P         L  W    +   +  +      ++         + ++I  I+Q   
Sbjct: 240 AKTNPWALKNATRQLPGWTSAGLGRCIQMLAWADEQSKTSGGDPVYALERSIELISQKGR 299

Query: 344 KNNN 347
            N +
Sbjct: 300 INRS 303


>gi|197294282|ref|YP_001798823.1| DNA polymerase III, delta subunit [Candidatus Phytoplasma
           australiense]
 gi|171853609|emb|CAM11480.1| DNA polymerase III, delta subunit [Candidatus Phytoplasma
           australiense]
          Length = 320

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 17/258 (6%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
            + +++  G  +  + + I +          D     V++    +   S    E+    L
Sbjct: 3   KNNIYLISGKQRFFLEQKIKKLIITFQNQSLD-----VVHYRMQKDADSDLEKELKVIPL 57

Query: 80  FSKKKIILIEN----LSTEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRKIAEK 133
               K+I+++     L  +KK L  L                +++  ++ N    ++ +K
Sbjct: 58  L--HKVIIVDQSEILLQKKKKELTFLNSYFQNPSPKISLYFFVENG-LENNENF-QLFQK 113

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
           + S   I     N       + ES       I K+A   LL     +      E++KL  
Sbjct: 114 YCSCETIVSLEKN--DFFTYVAESFEKEGFQIEKKAIYHLLKETNYNLFFLHQEIKKLKL 171

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
             LE+  IT   V+ +        +  +IN  +      A  L   F   K  +  +L+ 
Sbjct: 172 CQLEEKTITYPLVEKLNFFQTEDNLFHLINLFLNNNRIGAYELYQKFKKHKNNAFQILYQ 231

Query: 254 FLQKFQLLEKIHIIKECS 271
              K + L  +  + + +
Sbjct: 232 LTNKIKALLLVKNMVKQN 249


>gi|326381589|ref|ZP_08203283.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199836|gb|EGD57016.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 297

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICN--HIIIIKSNEIKKNNTLR-- 128
           E+ S SLF++++I+++++ +   K    L     K++     ++++ +   ++   +   
Sbjct: 30  ELLSPSLFAEERIVVVQSAADAGKEPAALITATAKSLPEGITLMVVHTGGGRQKAMVGEL 89

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K A       A   +P  +      +          +S E  +++   +G D        
Sbjct: 90  KKAGAQEFACAAPKWPSERAD---FVRSEFRALGAKVSAEVVELVTEMVGSDLRELSAAC 146

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           ++L +       +    V+        +   E+ +  + G +  A+    +         
Sbjct: 147 RQLVADTGNK--VDADAVRLYYTGRPEVTGFEVADKAVTGDLAGALESLAWAEHHGTARV 204

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            L     +    + ++  +          +  +      P +   +Q   R W+   + E
Sbjct: 205 LLADALAEAVHAIARVRSM---GGADKYTLASELGMP--PGRVGKIQTQARAWDSTSIGE 259

Query: 309 TL 310
            L
Sbjct: 260 AL 261


>gi|255327137|ref|ZP_05368212.1| DNA polymerase III, delta subunit [Rothia mucilaginosa ATCC 25296]
 gi|255295755|gb|EET75097.1| DNA polymerase III, delta subunit [Rothia mucilaginosa ATCC 25296]
          Length = 344

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 105/322 (32%), Gaps = 21/322 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              + YG ++        + ++    + H     V +NA               S SLF 
Sbjct: 35  PAVMLYGPEEYFASRAAARLRELFR-SIHPEVDRVQINAATYTAGELILH---ASPSLFG 90

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             KII +EN+++   + L      +     + ++I+  +   +   L  +    +  + I
Sbjct: 91  SAKIIEVENVASMSDEFLTDTLAYLNAPEPDIMLILNHSGGNRGKKLIDLV--RSQFVLI 148

Query: 141 SCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG--GDRIASRNELQKLSSYCLE 197
           +C          + +       Q+ I+  A  +L A      +  A+  +          
Sbjct: 149 NCKALKTDREKSEFLAGEFAASQRPITGGALALLTAAASDTAELAAACQQ-----LLSDV 203

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              ITE+ V         +    + +A I G    A+ L    LA+      +L     +
Sbjct: 204 PGEITEETVNRYYGGRTEVTAFRVSDAAISGNAPEALRLLRHSLATGTEPIPMLGALAMR 263

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            + + ++H ++  +N    ++         P +    Q   R +    +   +  +    
Sbjct: 264 IRNIARVHHVRMSANELAREVGMS------PWQVEQAQRDGRRFTGAQLAHIVQLLADAD 317

Query: 318 HLARKKKYLEKNIIFQTILYIA 339
              + +       + Q +L IA
Sbjct: 318 AQLKGESQDAVYAVEQAVLAIA 339


>gi|302528889|ref|ZP_07281231.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4]
 gi|302437784|gb|EFL09600.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4]
          Length = 323

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/330 (10%), Positives = 101/330 (30%), Gaps = 17/330 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G ++ LI E   +   + +        L      ++         E+ S SLF+
Sbjct: 7   PLHLVTGEEELLI-ERAVRASLDAARAADPTADLTRTRVSDLT--PPALA-ELVSPSLFA 62

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137
           + ++I++E+     +++ D +   +       ++++        K    L    +K  + 
Sbjct: 63  EGRVIVLESAQDISQELSDAVLAYVKAPADGIVLVVVHSGGGRSKAAKALPGALKKAGAE 122

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +               +   +      I       LL ++G D     +   +L      
Sbjct: 123 ITECPKLTKPAEREAFVRNEVRRAGGKIDGAGLMALLDSVGSDLRELSSAATQLV--ADT 180

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             ++ EQ V+        +    +    + G    A+    + +   +P   +       
Sbjct: 181 GGVVDEQAVRRYHTGRADVTGFAVAEKAVAGDRAAAMESLQWAMQLGVPHVLVADALA-- 238

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              +  I  +      +  ++  +       +++   Q   R W ++ +   +  +    
Sbjct: 239 -DAVRTIARVSAAGRGNPNQMAGELGMPPWKIRKA--QGQSRGWGQDGLATAMRVVARLN 295

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNNN 347
              +         + + +L +   A K + 
Sbjct: 296 AEVKGAAADANYALQRAVLDV--VAAKGDR 323


>gi|330833168|ref|YP_004401993.1| DNA polymerase III subunit delta [Streptococcus suis ST3]
 gi|329307391|gb|AEB81807.1| DNA polymerase III subunit delta [Streptococcus suis ST3]
          Length = 343

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 98/276 (35%), Gaps = 33/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G D G      +   + +     D     F +   +  ++  +       + S   F
Sbjct: 20  VLCGEDIGQYQIAKDLLLRKLDFDAADLGFAYFDMSEADYHQVDLD-------LVSLPFF 72

Query: 81  SKKKIILI---ENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           S +K++++    +L+T+KK       L   E  +   +    ++I +  ++     L K+
Sbjct: 73  SDEKVVILDYFADLTTDKKRHLTDDELKQFEVYLENPVETTCLVILAPGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++    L +   P  ++ L +  ++ ++     +  E  Q LL     D      E+ K
Sbjct: 133 LKRD--GLVLEANPLKEMDLKNHFQKEIMRLGLQMGGEVFQYLLEKSNFDF----AEISK 186

Query: 191 ----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               L SY      I    +   I  T    I ++    +Q K+  A  L          
Sbjct: 187 NLVFLQSYK-GKETIEISDIDAAIPKTLQDNIFDLTQLILQSKVDEARNLVRDLRLQGEE 245

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
              L+   L +F+   ++ I+ E      ++I+ + 
Sbjct: 246 EVKLIAIMLTQFRTYLQVQILLE-QGRGEQQIVAEL 280


>gi|116629808|ref|YP_814980.1| DNA polymerase III, delta subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238853439|ref|ZP_04643818.1| DNA polymerase III, delta subunit [Lactobacillus gasseri 202-4]
 gi|311110550|ref|ZP_07711947.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22]
 gi|116095390|gb|ABJ60542.1| DNA polymerase III, delta subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834011|gb|EEQ26269.1| DNA polymerase III, delta subunit [Lactobacillus gasseri 202-4]
 gi|311065704|gb|EFQ46044.1| DNA polymerase III, delta subunit [Lactobacillus gasseri MV-22]
          Length = 329

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 18/212 (8%)

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHII 114
           ++  +      +  +SLFS +K+++++N            KK ++ L +II        I
Sbjct: 51  LEDGLDELMATLTESSLFSSQKMVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDI 110

Query: 115 IIKSNE---IKKNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
           +I       I +   + K   +  +V+  ++  Y      +  +I+         I+  A
Sbjct: 111 VIFVANYEKIDRRKKVSKFLLEHVNVVETSLKPYE-----VSGVIKAISKEEGYQITNMA 165

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            QIL+        A+ +   KL +   ED  ITE  + + I  +    I EI+ A     
Sbjct: 166 LQILMQRSDQVLDAALSNYLKLKNIVGEDKKITETLINENIDRSLSENIFEILTAAFNKN 225

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
              A    D  L     +  LL  F  + + L
Sbjct: 226 YQEATQRLDDHLREGASAIQLLAIFESQIEFL 257


>gi|58699909|ref|ZP_00374504.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533574|gb|EAL57978.1| DNA polymerase III, subunits gamma and tau, programmed [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 396

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+ + EIKK             +  I+ C   +  ++ +  
Sbjct: 131 SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 179

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 180 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 238

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 239 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 297

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             N       +  K +      I   +
Sbjct: 298 IDNAVTEHEKNRIKDLSIKRSLIFFSR 324


>gi|24475504|dbj|BAC22717.1| dnaX [Wolbachia endosymbiont of Callosobruchus chinensis]
          Length = 516

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+   EIKK             +  I+ C   +  ++ +  
Sbjct: 153 SAFNALLKTLEEPPSSVKFILAPPEIKK-----------IPITIIARCQRFDLHNIPVAK 201

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 202 IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVIDI 260

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 261 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAIK-TANPLSIFEGLLQTIQLVCRFLITKE 319

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             N       +  K +   +  I   +
Sbjct: 320 IDNAVTEYEKNRIKDLSIKKSLIFFSR 346


>gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    +   L++LS        I+   V
Sbjct: 444 DADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 500

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL+          +   +
Sbjct: 501 QELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMS---------QLATV 551

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           I +    S++   ++  +     +     ++L   +   +R+ L  +       R     
Sbjct: 552 ITDILAGSYDFTKERLRRK-FFRR-----QALSKEDMEKLRQALKTLSEAEKQLRMSND- 604

Query: 327 EKNIIFQTILYIA 339
           +   +   +L +A
Sbjct: 605 KLTWLTAALLQLA 617


>gi|210135406|ref|YP_002301845.1| DNA polymerase III subunit delta [Helicobacter pylori P12]
 gi|210133374|gb|ACJ08365.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori
           P12]
          Length = 340

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I        ++  D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKLSNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129
              +++++ + +  KK  +    L    I+   ++ +II     K + T        + K
Sbjct: 73  GSSLVILKLDFALHKKFKENDTNLFLKAIERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E        IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANFLHLDISSHLLNALFEINNEDLSISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+        IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFARIKTTGLMDAKEVLGYAPP 286


>gi|283783400|ref|YP_003374154.1| putative DNA polymerase III, delta subunit [Gardnerella vaginalis
           409-05]
 gi|283441405|gb|ADB13871.1| putative DNA polymerase III, delta subunit [Gardnerella vaginalis
           409-05]
          Length = 348

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 109/348 (31%), Gaps = 46/348 (13%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V +  G D  L        ++ +  +  D   ++ L+A    +     ++E    SLF 
Sbjct: 13  PVTLVVGGDAYLNELNARTVREKVQESAPDA-EIIELDASTADQYA---FDEAVGPSLFG 68

Query: 82  KKKIILIENLS-TEKKVLDCLEEIIIK-------------------------NICNHIII 115
              I++I NL   ++ ++D +E    +                         +     +I
Sbjct: 69  DGTIVIINNLQQADESLVDAIENFCKQAQNSENNAQNSENNAQNSENSENFVDSSATWVI 128

Query: 116 IK-SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
            +    +K  + + ++ +   + + +     +   L  ++        +S+  +A Q L+
Sbjct: 129 ARHEGGLKGKSIITRLTKAGANTITVPDLKKDDAKLNFVMS-IFERHNRSVEPQAAQRLV 187

Query: 175 ANLGGDRIASRNELQKLSS---YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           + LG        EL  L S   +  +D  IT   V         L  +  +         
Sbjct: 188 SVLGSKT----GELAALCSQLCFDYDDNPITLDIVDRY------LVADPQVTGFFVADKA 237

Query: 232 NAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR 291
            A       LA++      +        L  K+ +I     I     I   E  + P   
Sbjct: 238 VAGHAGSAVLAARTAIAQGVDAIALIGALAAKVRVIALAMAI-RNGTISSAEAKVNPWAL 296

Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
            +    L  WN   V + L  +       +         + + I+ IA
Sbjct: 297 KMAMRQLAGWNSAGVSQCLQSLAWADEQCKGGSSDANYALEKCIMLIA 344


>gi|291302914|ref|YP_003514192.1| DNA polymerase III subunit delta [Stackebrandtia nassauensis DSM
           44728]
 gi|290572134|gb|ADD45099.1| DNA polymerase III, delta subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 319

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 99/320 (30%), Gaps = 22/320 (6%)

Query: 33  LIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS 92
           L+ E         +        +   +A ++          + S +LF    ++++EN  
Sbjct: 17  LLAERAVAAIVAEARQRDAGIQVHRADAGDLS--PGELTT-LTSPTLFGGGSVVVVENAQ 73

Query: 93  TEKK-VLDCLEEIIIKNICNH-IIIIKSNEIKKNN---TLRKIAEKFTSVLAISCYPDNK 147
             KK +   L   +     +  ++++ +   K      +LRK   +  S   I       
Sbjct: 74  DAKKELAAALNGYLDAPAADVEVVVVHAGGNKGKALAESLRKAGVEVISAAKIK----RA 129

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
               + ++E L       +  A + L+  +G D     +   +L +       +T   + 
Sbjct: 130 TDRANFVKEELRRLGARANAAAAEALITAVGHDLRELASACSQLVADTGGK--VTVDEIN 187

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
                   +    + +A + G    A+    + L+  + +  L        + + K+   
Sbjct: 188 KYYRGRAEVTGFAVADAAVTGDAQAALSGLRWALSVGVDAVPLADALATGVRNIAKVAGA 247

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327
           +E       K+         P + +  ++  R W    +   +          +      
Sbjct: 248 RESGYQLASKVGMA------PWQVDKAKQQGRGWTPEGLVAAMDVTAELNAAVKGGSEDR 301

Query: 328 KNIIFQTILYIAQTACKNNN 347
              + + IL I   A ++  
Sbjct: 302 AYALERAILAIT--AARSGR 319


>gi|240170819|ref|ZP_04749478.1| hypothetical protein MkanA1_16007 [Mycobacterium kansasii ATCC
           12478]
          Length = 327

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 81/253 (32%), Gaps = 27/253 (10%)

Query: 73  EINSTSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF+ ++I+++E    + +  V               ++++ S   +       L
Sbjct: 61  ELLSPSLFADERIVVLEAAAEAGKDAVAMIASTAADLPPGTVLVVVHSGGGRAKALAGQL 120

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           + +  +      I+   +     +D +       +  I  E    LL  +G       +E
Sbjct: 121 QSLGAQVHPCARITKLSER----LDFVRGEFRCLRVKIDDETVAALLDAVG-------SE 169

Query: 188 LQKLS-----SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           L++L+             +    V+        +   +I +  + G +  A     + + 
Sbjct: 170 LRELAAACSQLVADTGGHVDVAAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMM 229

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
              P   L     +    + +        +    ++  +      P +    Q+  R W+
Sbjct: 230 RGEPLVVLADALAEAVHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARRWS 283

Query: 303 KNLVRETLHKIDH 315
           ++ V   +  +  
Sbjct: 284 RDKVATAMKLVAE 296


>gi|237809564|ref|YP_002894004.1| DNA polymerase III, delta subunit [Tolumonas auensis DSM 9187]
 gi|237501825|gb|ACQ94418.1| DNA polymerase III, delta subunit [Tolumonas auensis DSM 9187]
          Length = 345

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 123/344 (35%), Gaps = 12/344 (3%)

Query: 9   FIQKSTKNLFLSHFV-FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           F ++  + L       ++ +G +     E + Q +            +   +A E     
Sbjct: 4   FSEQLAEQLQAGLRACYLIFGDEPLQKMEALQQIRHVAREQGFTD--VYRFSASEEPLPW 61

Query: 68  STFWNEINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
                   S SLFS ++II IE      K+  + + E+  +   + ++II    +  + +
Sbjct: 62  DHIHACSQSLSLFSSRQIIEIELGDKLPKEWAERISELQQQLHPDLLLIILGPRLNSSQS 121

Query: 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
                       + I     +  +    ++         I  +    L     G+ +A+ 
Sbjct: 122 KSGWFTTLDKQGIYIPVALPDARYFPRWMKLRSQQNGLRIDNDGITFLCHAFEGNLLAAA 181

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            EL+KL+        +T   ++  I   +V    + ++  ++GK   A+ +        +
Sbjct: 182 QELEKLAL-LALPQPLTVAVLQHNITRHNVFDPFKWLDTLLEGKSQRALRMLAQLRDEGV 240

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               L     +  +LL  + + ++        ++Q  +  I P ++ ++Q++++    + 
Sbjct: 241 EPGMLTWALAKDLELLWSLRLAQDA-RQPLTSLLQAAK--IWPSRQTLVQQAMQRLPADQ 297

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFY 349
           +R+ L  +     L R  +  +    +Q +  ++     + +  
Sbjct: 298 LRDMLRMMSE---LDRSNRTFDSATAWQWLQTLSLAFRGSTSLR 338


>gi|331695853|ref|YP_004332092.1| DNA polymerase III subunit delta [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950542|gb|AEA24239.1| DNA polymerase III, delta subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 342

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 96/310 (30%), Gaps = 42/310 (13%)

Query: 13  STKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWN 72
              +      V +  G ++ L+ E   Q     +        +  L   E+         
Sbjct: 20  PAASDGRPEPVNLVIGEEE-LLAERAVQEVVVRARAADPETEVRRLRTSEVDAQE---LA 75

Query: 73  EINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK----------SNEI 121
           E  S SLF++ +++++       K ++  +     +     +++++          ++++
Sbjct: 76  EHLSPSLFAEGRVVVLSAAQEAGKDMVAAVLRYAAEPADGIVLVLQHQGGARGKSFADDL 135

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
           +K        E+ T                D +   +      I+ +A  +LL  +G   
Sbjct: 136 RKAGAAVTRCERLTRPA----------ERADFVRAEVRRLGGKITGDAVDVLLEAVG--- 182

Query: 182 IASRNELQKLSSYCLE-----DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
               +EL++L+S   +       ++ E+ V+             + +  + G    A+  
Sbjct: 183 ----SELRELASAAGQLVADTGGVVDEKAVRRYHRGRAEATGFTVADKVVAGDREGALEA 238

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
             + L   +    +          +  +  +         ++          +++   Q 
Sbjct: 239 LRWALVLGVAPVLVADALA---DAVRTLAKVGAAGRGDPNRLAGTLGMPPWKIRKA--QG 293

Query: 297 SLRIWNKNLV 306
            +R W    +
Sbjct: 294 QVRSWRPEGL 303


>gi|295111912|emb|CBL28662.1| DNA polymerase III, delta subunit [Synergistetes bacterium SGP1]
          Length = 299

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 72/227 (31%), Gaps = 15/227 (6%)

Query: 39  NQFKKNISITYHDPFSLV-VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV 97
            Q ++ ++    +   +    +A     +       + S  LF+ ++ ++ E        
Sbjct: 15  RQLEETLTALTREDRQVSGKFDADGTFPDWRALLERVGSRGLFAAREAVVAEGCEALGAF 74

Query: 98  LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-----MD 152
            D L   +     + +I+            RK+  K    L    +   +  +      D
Sbjct: 75  PDGLAGSLEGPEADAVIVATFGG-----EARKVFSKEVLALKKVRFLKAEASVPPWKRKD 129

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
            + +        ++ +A  +L  ++       R+EL KL+ Y  +   I    V+ +  D
Sbjct: 130 WLLKLAQEKGWRLAPDAALLLGESIES-TEELRSELAKLALYA-DGREIALADVRALSFD 187

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
                +   ++    G   +          S+ P   +L     + +
Sbjct: 188 EGGRALLTFLDGVCAGNAQDVARALSRL--SRDPLLPVLTALCNRLR 232


>gi|317009931|gb|ADU80511.1| DNA polymerase III subunit delta [Helicobacter pylori India7]
          Length = 340

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II    + ++  K    ++ + K
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E   +    IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANLLHLDISGHLLNALFETNNEDLGISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|254779790|ref|YP_003057896.1| DNA polymerase III subunit delta [Helicobacter pylori B38]
 gi|254001702|emb|CAX29933.1| DNA polymerase III delta subunit [Helicobacter pylori B38]
          Length = 340

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I           +    + +  A + +K  S     +   SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKCN-NPDTEISLFYASDYEK--SQITTLLEQDSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDTNLFLKALERPSHNRLII---GLYNAKSDTTKYKYTSDT 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  I     I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAICTRFFIPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLGI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAVL---NTPITLEDIQELSSNAGDMDLQKLILGLFLKK--STLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|322375444|ref|ZP_08049957.1| DNA polymerase III, delta subunit [Streptococcus sp. C300]
 gi|321279707|gb|EFX56747.1| DNA polymerase III, delta subunit [Streptococcus sp. C300]
          Length = 345

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 101/273 (36%), Gaps = 25/273 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +K
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76

Query: 85  IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I+++++     + +K+ L        E  +        ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136

Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +V  AI      +  L    ++         ++++ + LL   G       +E+QK   
Sbjct: 137 ATVFDAIEP---KEQELRQYFQKWSQKQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +      D +I E+ + + I  T    I ++    +  KI  A  L             L
Sbjct: 190 FLQSYKSDGMIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           +   L +F+   ++ I+ E    +  +I     
Sbjct: 250 IAVMLGQFRTFTQVKILSET-GQTESQIASSLG 281


>gi|269218611|ref|ZP_06162465.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211722|gb|EEZ78062.1| DNA polymerase III, delta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 326

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 17/272 (6%)

Query: 78  SLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLF++  ++   NL   ++  + D L  +   +    +I+      +    L  +     
Sbjct: 68  SLFAEPNVVAASNLQKMSDAFLADALAYVSAPDPDVVLILRHDGGTRGKRLLDAVRAGGF 127

Query: 136 SVLAISC--YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
               I    YP+ K     L+ +     ++ ++ +A + L+   G D         +L  
Sbjct: 128 QCCEIPAVKYPNEK---AALVRDEASRARRRMTADAVEALVDAHGNDVGELVAATSQLL- 183

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
               D  I E  V+            +I +A + G    A+ LA   LAS +    ++  
Sbjct: 184 -SDVDGTIDEAAVRTYYAGRIQASGFDIADAAVAGNGGKAVALARHALASGVAPVPIVAA 242

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
              K + L  +   K  S    +         + P +R   +     W+   +   +  +
Sbjct: 243 LAYKLRTLALVAARKGASARPGD-------PTMSPGQRRRAERIAGQWSNEALATAIQAV 295

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345
                  +      +  + + IL +A  A + 
Sbjct: 296 AQADAEVKGASRDPEFALERVILRVA-AAKRG 326


>gi|332298753|ref|YP_004440675.1| DNA polymerase III, delta subunit [Treponema brennaborense DSM
           12168]
 gi|332181856|gb|AEE17544.1| DNA polymerase III, delta subunit [Treponema brennaborense DSM
           12168]
          Length = 348

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 102/335 (30%), Gaps = 27/335 (8%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  V++F G + G   + +   +  +     D        A     ++ +    + + SL
Sbjct: 3   AAPVYLFTGPEFGERNDAVLNLRIQMRKRLGDLDEYTFYTADTRVADVVSL---LMNESL 59

Query: 80  FSKKKIILIENLSTEKKVLD-------CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           F+  + I++      KK  D              KN     +I+ S E   +  L  +  
Sbjct: 60  FAAARFIVLNGAEQIKKKEDLELLDGWIRSAASGKNAAGSALILVSEENSCDKKLEALIP 119

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K    +    + D K      I          +  +A   +L  +  +  A R E  +  
Sbjct: 120 KENKRIFWEMFDDRKEE---WIRNFFKKAGYGVENDAVTTILDLVENNTEALRTECSRFF 176

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATI------QGKIYNAIMLADFFLASK-M 245
               +   +    V+ I+          + +A          ++  ++ +      SK  
Sbjct: 177 LCFDKGHTVGASDVEQILAHNREESPFTLFDAFTDLARNPAARLEASLEILQKLRMSKDS 236

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWN 302
               L+ G    F+ L   H +   +    +  ++          +   ++   + RIWN
Sbjct: 237 SGVQLIAGLTYCFRRLAVWHRLFAENPHPSDFDLKIKG----FSSKKAQKQYRAAARIWN 292

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
                  L  +       R      ++   Q +LY
Sbjct: 293 APQTSLILAALARTDMDIRTAGTALEDTQLQLLLY 327


>gi|282851687|ref|ZP_06261052.1| putative DNA polymerase III, delta subunit [Lactobacillus gasseri
           224-1]
 gi|282557655|gb|EFB63252.1| putative DNA polymerase III, delta subunit [Lactobacillus gasseri
           224-1]
          Length = 299

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 18/212 (8%)

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENL--------STEKKVLDCLEEIIIKNICNHII 114
           ++  +      +  +SLFS +K+++++N            KK ++ L +II        I
Sbjct: 21  LEDGLDELMATLTESSLFSSQKMVVVKNPFFLMAKVPQKYKKQIEKLTKIIEHLDDLEDI 80

Query: 115 IIKSNE---IKKNNTLRKIAEKFTSVL--AISCYPDNKIHLMDLIEESLLIGQKSISKEA 169
           +I       I +   + K   +  +V+  ++  Y      +  +I+         I+  A
Sbjct: 81  VIFVANYEKIDRRKKVSKFLLEHVNVVETSLKPYE-----VSGVIKAISKEEGYQITNMA 135

Query: 170 KQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            QIL+        A+ +   KL +   ED  ITE  + + I  +    I EI+ A     
Sbjct: 136 LQILMQRSDQVLDAALSNYLKLKNIVGEDKKITETLINENIDRSLSENIFEILTAAFNKN 195

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
              A    D  L     +  LL  F  + + L
Sbjct: 196 YQEATQRLDDHLREGASAIQLLAIFESQIEFL 227


>gi|225443722|ref|XP_002265273.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1161

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    +   L++LS        I+   V
Sbjct: 632 DADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 688

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL+          +   +
Sbjct: 689 QELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMS---------QLATV 739

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           I +    S++   ++  +     +     ++L   +   +R+ L  +       R     
Sbjct: 740 ITDILAGSYDFTKERLRRK-FFRR-----QALSKEDMEKLRQALKTLSEAEKQLRMSND- 792

Query: 327 EKNIIFQTILYIA 339
           +   +   +L +A
Sbjct: 793 KLTWLTAALLQLA 805


>gi|315587138|gb|ADU41519.1| DNA polymerase III subunit delta [Helicobacter pylori 35A]
          Length = 340

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I                D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYTQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSDA 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K I      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEILGYAPP 286


>gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira
           hyodysenteriae WA1]
 gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira
           hyodysenteriae WA1]
          Length = 527

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 107/299 (35%), Gaps = 22/299 (7%)

Query: 45  ISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLSTEKK-VLDCL 101
             I    P  ++ ++    +  +NI T    +  + +  K K+ +I+ +        + L
Sbjct: 82  TQIENGTPLDVIEIDGASNRGIENIRTIIENVRISPVAGKYKVYIIDEVHQITNEAFNAL 141

Query: 102 EEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTS-VLAISCYPDNKIHLMDLIEESLL 159
            + + +   + + I+ + E ++   T+R   +++T   L I         L  +++  L 
Sbjct: 142 LKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSLGI-------EDLEKILKGILD 194

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                  +EA  ++     G    S   L+K+ +Y  +   IT   V  ++   +  +++
Sbjct: 195 KENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVNAVVGGNNFSFVK 254

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
              +  I+G                +     ++  ++  +++  I      S I   K++
Sbjct: 255 GFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIK-----SGIDDIKLL 309

Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
           +     I   +R+ L+     +N + +   L  I       R           + +L +
Sbjct: 310 E-----ITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEMRMLLLL 363


>gi|308064027|gb|ADO05914.1| DNA polymerase III subunit delta [Helicobacter pylori Sat464]
          Length = 340

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCDNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANSLHLDISSHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  I  + ++++  +   + ++++I      K  +A+ + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SALDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + S +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTSGLMDAKEVLGYAPP 286


>gi|298529741|ref|ZP_07017144.1| DNA polymerase III delta [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511177|gb|EFI35080.1| DNA polymerase III delta [Desulfonatronospira thiodismutans ASO3-1]
          Length = 323

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 28/294 (9%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           + F+  D GL+     Q  K +     D + +  L + + + +    W  +N  ++    
Sbjct: 7   YFFFCPDAGLVK---RQIHKTLEPYDPDSWEINTLWSDDPELD-QKLWKALNMANMMGPS 62

Query: 84  KIILIENLSTEKKVL-DCLEEIIIKNICNH--IIIIKSNEIKKNNTL------RKIAEKF 134
           +++++ N    K      L   +            ++    K+   +      +K  +  
Sbjct: 63  RVVVVRNCQVFKDAQWKALAPALKGFKSGIWPFFCLEGQWDKQKPKIPAVLENKKFFKIA 122

Query: 135 TSVLAISCYPD-NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                I  +P   + +L   +E+         +   ++ L+  L  + +    EL+KL  
Sbjct: 123 RERGWIWQFPGITRQNLPRYLEKRARETGLVFAPGVQEKLVNILPLNSLGVDQELEKLLL 182

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
              +   +  +H  DI+     L I   + +  QGK  N  ++   F   +      L  
Sbjct: 183 LANDQGKVEAEH-LDIVEPRADLDIFAQMQSIQQGK--NITLVWQKFFRDQQTGQEALFP 239

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL------RIW 301
           FL        +H  +   +++  +  +         ++  L   L      R+W
Sbjct: 240 FLG-----LLLHEARVLWHLAAGEEDRVFLYPRTKNEKKRLARQLGPRNIARLW 288


>gi|327399812|ref|YP_004340681.1| DNA polymerase III subunit delta [Hippea maritima DSM 10411]
 gi|327182441|gb|AEA34622.1| DNA polymerase III delta [Hippea maritima DSM 10411]
          Length = 305

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +IF G D  +      +  K           +V+ +  E+++       +  S  LF  K
Sbjct: 19  YIFCGDDYFIKDLYAKRIAKTKGAQIR---KVVITDEAELRQ----IMAKALSKPLFQAK 71

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143
            ++L   +ST     D  + + I    ++I+I+   +++     R   EK  +V+     
Sbjct: 72  PLLLYGVVST-----DLPKNLSITPPTHNILIL---DLE-----RCKEEKENTVIFKPP- 117

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANL-GGDRIASRNELQKLSSYCLEDILIT 202
                 +   I+ +     K+I+ EA ++L  +  G +    +N + +L         I 
Sbjct: 118 --KASEIASFIKNAASRNNKTITDEAVRLLSRSFEGKNTSYLKNTVDELLLLTYNKKQIE 175

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           ++  +  +  T    I++II+          +      L+   PS  +
Sbjct: 176 KEDAEKCLTLTANFDIKDIIDMVKTKDFVGIVEKIGQILSQIPPSLFV 223


>gi|195977789|ref|YP_002123033.1| DNA polymerase III subunit delta [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974494|gb|ACG62020.1| DNA polymerase III subunit delta [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 353

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 25/274 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G    +     K I+    D     F +        + +       + S  
Sbjct: 18  ITVVAGEDIGQYSHMKALLLKKIAFDPSDLTYSYFDMSEALYQTAEMD-------LVSMP 70

Query: 79  LFSKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++++   +++T KK       L   E+ +   +    ++I +  ++     L 
Sbjct: 71  FFADQKVVILDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++    L     P          ++       S +  A   LL     D       +
Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L +Y  +   IT + +   I  +    + ++    +QGKI  A  L      S     
Sbjct: 189 TFLKAYK-KSGPITVEDIAQAIPKSLQDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            L+   L +F+L  ++  +   S  + ++++   
Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280


>gi|225870084|ref|YP_002746031.1| DNA polymerase III delta subunit [Streptococcus equi subsp. equi
           4047]
 gi|225699488|emb|CAW93024.1| putative DNA polymerase III delta subunit [Streptococcus equi
           subsp. equi 4047]
          Length = 353

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 25/274 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G    +     K I+    D     F +        + +       + S  
Sbjct: 18  ITVVTGEDIGQYSHMKALLLKKIAFDPADLTYSYFDMSEALYQTAEMD-------LVSMP 70

Query: 79  LFSKKKIIL---IENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++   + +++T KK       L   E+ +   +    ++I +  ++     L 
Sbjct: 71  FFADQKVVIFDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++    L     P          ++       S +  A   LL     D       +
Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L +Y  +   IT + +   I  +    + ++    +QGKI  A  L      S     
Sbjct: 189 TFLKAYK-KSGPITVEDIAQAIPKSLQDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            L+   L +F+L  ++  +   S  + ++++   
Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280


>gi|118618945|ref|YP_907277.1| hypothetical protein MUL_3677 [Mycobacterium ulcerans Agy99]
 gi|118571055|gb|ABL05806.1| DNA polymerase III, delta subunit HolA [Mycobacterium ulcerans
           Agy99]
          Length = 325

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 86/251 (34%), Gaps = 23/251 (9%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKI 130
           E+ S SLF++++I+++E  +   K    L             ++++ S   +      ++
Sbjct: 59  ELLSPSLFAEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRTKALAGEL 118

Query: 131 AEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             K        C         +D +       +  + ++    LL  +G D       ++
Sbjct: 119 --KSLGAQVHPCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSD-------IR 169

Query: 190 KLSSYCLEDILITEQHVKDII-----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +L+S C + +  T   V  +           +   +I +  + G +  A     + +   
Sbjct: 170 ELASACSQLVADTGGDVDAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRG 229

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            P   L           E IH I     +S +     ++  + P +    Q+  R W+++
Sbjct: 230 EPLLVLADALA------EAIHTIGRVGPLSGDPYRMASQLGMRPWRVQKAQKQARRWSRD 283

Query: 305 LVRETLHKIDH 315
            V   +  +  
Sbjct: 284 KVATAMQLVAQ 294


>gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo]
          Length = 1170

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 61/194 (31%), Gaps = 21/194 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    +   L++LS        I+   +
Sbjct: 631 DADVIHTLQWIATQENLEIDKDALKLITSRSDGSLRDAEMTLEQLSLL---GQRISVPLI 687

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + S +   AL+         +     
Sbjct: 688 QELVGLISDEKLVDLLDLALSADTVNTVKHLRLIIESGVEPMALMSQIATVITDILAGSY 747

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325
             +      +             ++ + +E     +   +R+ L  +       R     
Sbjct: 748 DFKKERPRRK----------FFRRQPLSKE-----DMEKLRQALKTLSEAEKQLRMSNDK 792

Query: 326 LEKNIIFQTILYIA 339
           L    +   +L +A
Sbjct: 793 L--TWLTAALLQLA 804


>gi|317013034|gb|ADU83642.1| DNA polymerase III subunit delta [Helicobacter pylori Lithuania75]
          Length = 340

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDMETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII--IKS-NEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II    + ++  K    ++ + K
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E   +    IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANLLHLDISSHLLNALFEINNEDLGISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SILDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|217033568|ref|ZP_03438996.1| hypothetical protein HP9810_899g4 [Helicobacter pylori 98-10]
 gi|216943914|gb|EEC23348.1| hypothetical protein HP9810_899g4 [Helicobacter pylori 98-10]
          Length = 320

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 26/226 (11%)

Query: 78  SLFSKKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           SLF    +++++ + +  KK  +       + + +   N +II         +   K   
Sbjct: 49  SLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKY 105

Query: 133 KFTSVLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGG 179
              +++     S   D  IH+   I          +E        IS      L      
Sbjct: 106 TSDAIVKFFQKSPLKDEAIHVRFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNE 165

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           D   S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+
Sbjct: 166 DLSVSFNDLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDY 220

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
            L        +L G  + F  L       + + +   K +      
Sbjct: 221 LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 266


>gi|260062481|ref|YP_003195561.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata
           HTCC2501]
 gi|88784046|gb|EAR15216.1| DNA polymerase III subunit gamma/tau [Robiginitalea biformata
           HTCC2501]
          Length = 631

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 100/328 (30%), Gaps = 43/328 (13%)

Query: 38  INQFKKNISITYHD------PFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIE 89
                K I+   +        F++  L+A       +I    +++       K K+ +I+
Sbjct: 67  ARILAKKINEDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKYKVYIID 126

Query: 90  NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN 146
            +    +   +   + + +   + I I+               EK   +  I   C   +
Sbjct: 127 EVHMLSQAAFNAFLKTLEEPPRHAIFIL------------ATTEKHKIIPTILSRCQIFD 174

Query: 147 KIHL-----MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
              +        ++           +EA  ++     G    + +   ++ S+      +
Sbjct: 175 FRRITVGDAASYLKYIAEQQGIEADEEALHMIAQKADGAMRDALSIFDRVVSFAGNK--L 232

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T + V + +    V    E  +  ++G I   ++  +  LA     H  ++G    F+ L
Sbjct: 233 TRKAVAENLNVLDVDVYFESTDHILKGDIPALLIYFNEILAQGFEGHHYINGLASHFRDL 292

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                 +  + +   + +          ++  L+++    +   +   L   +      +
Sbjct: 293 MVCTSQETVALLETSESV----------RQRYLEQA-SHCSGEFLLAALDLANQCDLDYK 341

Query: 322 --KKKYLEKNIIFQTILYIAQTACKNNN 347
             K   L   +    +  + Q   K   
Sbjct: 342 TSKNHRLLVELCLMKLASLTQRQKKKAR 369


>gi|120404867|ref|YP_954696.1| hypothetical protein Mvan_3913 [Mycobacterium vanbaalenii PYR-1]
 gi|119957685|gb|ABM14690.1| DNA polymerase III, delta [Mycobacterium vanbaalenii PYR-1]
          Length = 316

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 100/326 (30%), Gaps = 25/326 (7%)

Query: 25  IFYGSDKGLIFE------LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +  G ++ L+           +     S    D      ++  E+         E+ S S
Sbjct: 6   LVLGDEELLVERAVAEVLRTARASAGTSDVPVDRLRAGEVSVSELA--------ELLSPS 57

Query: 79  LFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           LF+ ++++++E+ +   K  +  ++          ++++  +   +   L    +K    
Sbjct: 58  LFADERVVVLESAAEAGKDAVALIQTAAADLPDGTLLVVVHSGGGRAKALADQLKKL-GA 116

Query: 138 LAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
               C          D + +     +  + +     +L  LG D         +L     
Sbjct: 117 EVHPCARITKASERADFVRKEFRTLRVKVDEATVTAVLDALGSDIRELAAACSQLV--AD 174

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +    V+        +   +I +  + G +  A     + + +  P   L     +
Sbjct: 175 TGGAVDAAAVRRYYSGRAEVKGFDIADKAVVGDVAGAAEALRWAMMAGEPHVVLADALAE 234

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
               + +        +    ++  +      P +    Q+  R W+++ V + L  +   
Sbjct: 235 AVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQARRWSRDSVAQALRLVAAL 288

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTA 342
               +         + + +  +A+ A
Sbjct: 289 NADVKGAAADADYALEKAVRSVAELA 314


>gi|323359819|ref|YP_004226215.1| DNA polymerase III, delta subunit [Microbacterium testaceum
           StLB037]
 gi|323276190|dbj|BAJ76335.1| DNA polymerase III, delta subunit [Microbacterium testaceum
           StLB037]
          Length = 345

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 96/305 (31%), Gaps = 18/305 (5%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G ++ +  E      +    +      +  + A +      T    + S SLF 
Sbjct: 29  PIVLVSGPEE-VCAERATAGIREFLKSEDPSLEVTDVRADDYAA--GTLL-AVTSPSLFG 84

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVL 138
           + +++ +  +       L      + +      +++      ++    L  I       +
Sbjct: 85  EPRLVRVGGVEKCSDTFLSEAVSYLAQPQDGATVVLRHTGASVRGKKLLDAIRAGQGGGI 144

Query: 139 AISCYPDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            I+C P  K                 K I+  A + L++    D        Q+L     
Sbjct: 145 EIAC-PAIKRDSDRFDFAVGEFKASSKRIAPVALRALVSAFADDLTELAAACQQLI--AD 201

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               I E+ V+             + +  I G+   A++     LAS      L+     
Sbjct: 202 VPGDIDERTVERYYGGRVETSAFTVADTAIAGQYGPALLALRHALASGADPVPLVAAVAM 261

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           K + + ++   +E S+   +++  K +  +   +R+++      W    +   +H     
Sbjct: 262 KLRTMARVAGTREPSSQLAQRLGMK-DWQVDRARRDLVG-----WTAASLGRAIHATARA 315

Query: 317 IHLAR 321
               +
Sbjct: 316 DAEVK 320


>gi|312196040|ref|YP_004016101.1| DNA polymerase III subunit delta [Frankia sp. EuI1c]
 gi|311227376|gb|ADP80231.1| DNA polymerase III, delta subunit [Frankia sp. EuI1c]
          Length = 340

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 18/287 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G ++ L+     +   + +        +V   A E   +      ++ ++SLF 
Sbjct: 17  PLLLIQGDEELLVA-RAVREALDAARAVDPELEVVDRAAGEFTDSD---VVDLGASSLFG 72

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             + ++I        ++ D L   I   + + ++++  N   +N   RKI +   +  A 
Sbjct: 73  GLRAVVIRAAQDLTDELRDALIAYIAHPMDDVVLVVVHNGAVRN---RKIVDAMKAAGAR 129

Query: 141 S---CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +             D +   +      I   A   LL  +G D     +  ++L      
Sbjct: 130 AVTVPKISRPRERHDFVVAEVRRAGGRIGDAAAAALLDAVGSDLRELASVCEQLV--ADT 187

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  + E  V              + +A I G +  A+ L    L S   +  +       
Sbjct: 188 DGPLDEAAVHRFHRGRAEASGFAVADAAIGGDLGAALTLLRQALESGTAAVLISSAVTGG 247

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            + L +   +      S   + +        +++   Q S R W+ +
Sbjct: 248 LRDLAR---VAGAGGGSKFDLARALGMPDWKVEKA--QRSARSWSDD 289


>gi|313140332|ref|ZP_07802525.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
 gi|313132842|gb|EFR50459.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
          Length = 328

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 17/223 (7%)

Query: 107 KNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
            +     I+I      +K    L ++ +       ++     +  L  ++ +      + 
Sbjct: 98  ADPGASSIVICRHEGGVKGKRLLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGEHRR 156

Query: 165 ISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
           +   A Q L+A LG   G+  A  ++L     +  +D  IT   V   +     +    +
Sbjct: 157 VEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFSV 212

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281
            +  I G+   AI+     +       AL+           K+  I + S +    I Q 
Sbjct: 213 ADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQA 266

Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
             K    + +N +   L  W    + + +  +      ++   
Sbjct: 267 QAKTNPWVLKNAM-RQLSGWTSAGLGQCIRMLAWADEQSKTNG 308


>gi|306825015|ref|ZP_07458358.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432842|gb|EFM35815.1| DNA-directed DNA polymerase III delta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 345

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 125/337 (37%), Gaps = 31/337 (9%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +K
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76

Query: 85  IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I+++++     + +K  L        EE +        ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFVDITTAKKHFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDCKRRLVKLLKRD 136

Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +V  AI      +  L    ++         ++++ + LL   G       +E+QK   
Sbjct: 137 ATVFDAI---EAKEQELRQYFQKWSQTQGLQFAEKSFENLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           +      D LI E+ + ++I  T    I ++    +  KI  A  L             L
Sbjct: 190 FLQSYKSDGLIEEKDIIEVIPKTLQDNIFDLTQFILAKKIDQARDLVRDLTLQGEDEIKL 249

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNL 305
           +   L +F+   ++ I+ +    +  +I+                +  L++S R  +   
Sbjct: 250 IAVMLGQFRTFIQVKILSDA-GQTESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAF 307

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
           ++  +  +    +  +   Y +  +  + +L IA  A
Sbjct: 308 LKRAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344


>gi|297380427|gb|ADI35314.1| DNA polymerase III subunit delta [Helicobacter pylori v225d]
          Length = 340

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I           +         A + +KN       +   SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCN-NPDMETSFFYASDYEKN--QIATLLEQDSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++ +   S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISGHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+        IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|224283182|ref|ZP_03646504.1| DNA polymerase III delta subunit [Bifidobacterium bifidum NCIMB
           41171]
 gi|310287547|ref|YP_003938805.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum S17]
 gi|309251483|gb|ADO53231.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum S17]
          Length = 325

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 17/223 (7%)

Query: 107 KNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
            +     I+I      +K    L ++ +       ++     +  L  ++ +      + 
Sbjct: 95  ADPGASSIVICRHEGGVKGKRLLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGEHRR 153

Query: 165 ISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
           +   A Q L+A LG   G+  A  ++L     +  +D  IT   V   +     +    +
Sbjct: 154 VEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFSV 209

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281
            +  I G+   AI+     +       AL+           K+  I + S +    I Q 
Sbjct: 210 ADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQA 263

Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
             K    + +N +   L  W    + + +  +      ++   
Sbjct: 264 QAKTNPWVLKNAM-RQLSGWTSAGLGQCIRMLAWADEQSKTNG 305


>gi|111221436|ref|YP_712230.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111148968|emb|CAJ60648.1| putative DNA-binding protein [Frankia alni ACN14a]
          Length = 352

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 19/303 (6%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            +  + +  G +  L+       ++ +         + V++    +   +   + + +TS
Sbjct: 25  PAPPLVLVSGDEDLLV---GRAVREVLDAARARDPEVEVVDRAAAEFTEADMVD-LGATS 80

Query: 79  LFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH-IIIIKSNEIKKNNTLRKIAE--KF 134
           +F   + +++  +    +++ D L   I   + +  ++++ S  +K     RK+A+  K 
Sbjct: 81  MFGGGRAVVVRGVQDLGEELRDALLAYISHPLDDVVLVLVHSGAVKN----RKLADAMKA 136

Query: 135 TSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                +            D +   +      +S  A + LL  +GGD         +L +
Sbjct: 137 AGARVVPAAKITKPRERHDFVVAEVRRLGGRVSDGAVRALLDAVGGDLRELAAVCDQLVA 196

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                 ++ E  V              + +A I G +  A+ L    +     +  +   
Sbjct: 197 DTEG-GMLDEAAVARFHRGRAEATGFAVADAIIGGDLPQALTLLRQAVEGGTAAVLITSA 255

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
                + L ++      +     + +   +           Q S R W+   +   L   
Sbjct: 256 VAGGLRDLARVSSAGPGTKWDLARALGMPD----WKVEKA-QRSARAWSDPGLALALRAS 310

Query: 314 DHR 316
              
Sbjct: 311 ATA 313


>gi|261839966|gb|ACX99731.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori
           52]
          Length = 340

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII---IKSNEIKK----NNTLRK 129
              +++++ +    KK  +       + + +   N +II      ++  K    ++T+ K
Sbjct: 73  GSSLVVLKLDFVLHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYTSDTIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E        IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANFLHLDISGHLLNALFEINNEDLSVSFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAIL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPP 286


>gi|213581840|ref|ZP_03363666.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 167

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADF 239
           + +A    L++LS     D  +T   V+  + D         ++A + GK   A+ +   
Sbjct: 1   NLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQ 59

Query: 240 FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
                     LL    ++  LL  +   ++ ++     +  K    +   +R ++ ++L+
Sbjct: 60  LRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--VWQNRRPMIGDALQ 115

Query: 300 IWNKNLVRETLHKIDHRIHLARK 322
             +   +R+ +  +       ++
Sbjct: 116 RLHPAQLRQAVQLLTRTEITLKQ 138


>gi|183983714|ref|YP_001852005.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M]
 gi|183177040|gb|ACC42150.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M]
          Length = 325

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 83/251 (33%), Gaps = 23/251 (9%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNNTLRKI 130
           E+ S SLF++++I+++E  +   K    L             ++++ S   +      ++
Sbjct: 59  ELLSPSLFAEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRAKALAGEL 118

Query: 131 AEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
             K        C         +D +       +  + ++    LL  +G D       ++
Sbjct: 119 --KSLGAQVHPCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSD-------IR 169

Query: 190 KLSSYCLEDILITEQHVKDII-----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
           +L+S C + +  T   V  +           +   +I +  + G +  A     + +   
Sbjct: 170 ELASACSQLVADTGGDVDAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRG 229

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
            P   L     +    + +        +    ++  +      P +    Q+  R W+++
Sbjct: 230 EPLVVLADALAEAIHTIGR----VGPLSGDPYRMASQLGMP--PWRVQKAQKQARRWSRD 283

Query: 305 LVRETLHKIDH 315
            V   +  +  
Sbjct: 284 KVATAMQLVAQ 294


>gi|134098024|ref|YP_001103685.1| hypothetical protein SACE_1438 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007211|ref|ZP_06565184.1| hypothetical protein SeryN2_22042 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910647|emb|CAM00760.1| DNA polymerase III delta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 326

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/327 (11%), Positives = 98/327 (29%), Gaps = 27/327 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G ++ L+ E         +        L  +   E+        +E+ S SLF+
Sbjct: 10  PLHLILGEEELLV-ERALWAAVGAARAADPEAELRRVKVSELT--PPEL-DEMLSPSLFA 65

Query: 82  KKKIILIENL-STEKKVLDCLEEIIIKNICNHIIII---------KSNEIKKNNTLRKIA 131
           + +++ +E      K++ + +     +     I+++          + E+   N LRK+ 
Sbjct: 66  EGRVVALEAAQEAGKEIAEAVLSYARQPAEGVILVVVHSGGGRGKNAKELP--NALRKLG 123

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            + T    I             + + +      I       L+  +G D     +   +L
Sbjct: 124 ARVTECNKI----TKPAEREAFVRDEVRRAGGKIDASGVSALIETVGSDLRELSSAASQL 179

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
            +       + +  V+        +    +    + G    A+    + L   +P   + 
Sbjct: 180 VADTGGK--VDDAAVRRYHRGRAEVTGFVVAEKAVTGDRTGALESLRWALQLGVPHVLIA 237

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
                    +  I  +         ++  +         +  L +S R W+   + + L 
Sbjct: 238 DALA---DAVRTIGRVAAAGRSDPFRLAGELGMPA-WKVKKALAQS-RGWSSATIADALQ 292

Query: 312 KIDHRIHLARKKKYLEKNIIFQTILYI 338
                    +         + + +L +
Sbjct: 293 VAAALNAEVKGMAADADYALERAVLRV 319


>gi|305680746|ref|ZP_07403553.1| DNA polymerase III, delta subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|305658951|gb|EFM48451.1| DNA polymerase III, delta subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 322

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 98/299 (32%), Gaps = 15/299 (5%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
              +  S  V +  G+++ L  E                   +++  L       +   E
Sbjct: 2   PTPITPSPQVHLIVGAEEFL-AERARLDIVAQLKQQSSEGENLMVTTLRAGDVTESELIE 60

Query: 74  INSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           + S SLF + +I+++  L    K+  D + +  +       II+  N        + +  
Sbjct: 61  LCSPSLFGEDRIVVLTKLEDAGKEPADLILKFAVNPAPGVAIILMHNG---GGRTKALVP 117

Query: 133 KFTSVLAISCYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           K   +  +    +       +  +           + +  Q +LA +G D     + + +
Sbjct: 118 KLKKIATVH-QAEKLKPQERMGWVTNEFRRHNVRPTPDVVQAVLAGVGSDLRELASAVSQ 176

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L        ++T Q V D       +   +I +    G+   A++     L   +   AL
Sbjct: 177 LV--ADTGGVVTAQAVHDYYAGVAEVSGFDIADYACSGQEQRALVSMRRALQLGLEPAAL 234

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
                 K   + +++ ++   + S          +   +++    +  R W+ + V + 
Sbjct: 235 AAALAMKVSGIARLYSLRGRVDRSLA---GSLGMHPFVLEKTA--QIARRWSGDAVSDA 288


>gi|311064460|ref|YP_003971185.1| DNA polymerase III subunit delta [Bifidobacterium bifidum PRL2010]
 gi|310866779|gb|ADP36148.1| DNA polymerase III, delta subunit [Bifidobacterium bifidum PRL2010]
          Length = 312

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 73/224 (32%), Gaps = 19/224 (8%)

Query: 107 KNICNHIIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163
            +     I+I   +     K   L ++ +       ++     +  L  ++ +     ++
Sbjct: 82  ADPGASSIVICRHEGGAKGKR-LLDQLVKAGACKETVADLKKPEAKLNFVL-QIFEGERR 139

Query: 164 SISKEAKQILLANLG---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
            +   A Q L+A LG   G+  A  ++L     +  +D  IT   V   +     +    
Sbjct: 140 RVEPLAAQQLVAVLGERTGEMAAMCSQL----CFDFDDDPITLDLVNRYLTSNPQVTGFS 195

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           + +  I G+   AI+     +       AL+           K+  I + S +    I Q
Sbjct: 196 VADKAIAGRTAEAIIAMRSAVEQGTDPIALIGALA------MKLRTIAKASAVKAGTITQ 249

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
              K    + +N +   L  W    +   +  +      ++   
Sbjct: 250 AQAKTNPWVLKNAM-RQLSGWTSAGLGRCIRMLAWADEQSKTNG 292


>gi|269123150|ref|YP_003305727.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112]
 gi|268314476|gb|ACZ00850.1| DNA polymerase III delta [Streptobacillus moniliformis DSM 12112]
          Length = 295

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 104/232 (44%), Gaps = 29/232 (12%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--KSN-E 120
           +  +S F +E+N+ SLFS+  I++++N +  K + + ++ + +    +  +II  ++N E
Sbjct: 31  ENTVSEFLSELNAGSLFSEPTILILKNANKVKDINNVIKNVNLNTFNDKDVIIDYEANKE 90

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIH---LMDLIEESLLIGQKSISKEAKQILLANL 177
            KK   L    E    +       D++ +   L+  I+E L       SK++  IL   +
Sbjct: 91  NKKIKELLNNFEVHEIL-------DDRENKNVLIKYIQERLKCN----SKDSNNIL-EII 138

Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           G D  + +NE+ K+ SY L     +  ++K I+      +I  +    +  K+    +  
Sbjct: 139 GQDFYSLKNEIDKICSY-LNGEEFSFDNIKPILSKNTNFFIFNLTEDILNKKMIEFPIKE 197

Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
           +          ALL      F+++ K+HI+ +  NI++     + E +    
Sbjct: 198 N---------MALLSSLSNDFEIMYKLHIL-DIKNINYNNFKSQYENHKFFK 239


>gi|85057290|ref|YP_456206.1| DNA polymerase III, delta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789395|gb|ABC65127.1| DNA polymerase III, delta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 323

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 13/244 (5%)

Query: 63  IQKNIST-FWNEINSTSLFSK--KKIILIENLST--EKKVLDC--LEEIIIKNICNHIII 115
           +QK+I T    E+ +TSL     KK+IL+++     +KK  +   L   +     N  + 
Sbjct: 41  MQKDIVTELKKELQNTSLIENTWKKVILVDHSEILFQKKTQEIAFLISYLQNPYKNLDLY 100

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
             + +  K + ++KI EK       +     K      I +        I  +  Q L +
Sbjct: 101 FFAEKTTKTSEVQKIWEKHCICKTTNSL--EKKDFFKYIMDVFQKDGFKIDTKTIQELAS 158

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
               +      E+ K+      D  IT Q V+ I        I  +IN  ++    +A  
Sbjct: 159 KTNYNLYFLHQEITKIKLCQTNDKNITWQMVQKINAFKKNDNIFGLINLFLKQNYIDAYQ 218

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFE--KIIQKTEKNIIP--MKR 291
           +       K+ +  +++    K + L  +  + +  N   E  K++  ++  +     + 
Sbjct: 219 IYKTLKMQKINAFNVINRLTHKIKELLLVKELLQQKNNPEELQKVLAVSQGKVFFLIKEA 278

Query: 292 NILQ 295
            +++
Sbjct: 279 KLIE 282


>gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
 gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
          Length = 1291

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++  +++        I  EA +++ +   G    +   L +L        ++T   +++
Sbjct: 677 DIISRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLL---GQVVTLSTLQE 733

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  + G   + +      L S +   AL          L  +    
Sbjct: 734 LVGLLPDDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLAL-------MSQLATLITDM 786

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNIL--QESLRIWNKNLVRETLHKIDHRIHLAR 321
                     +  + K ++  ++     + +L   +   +R+ L  +       R
Sbjct: 787 ----------LAGSYKPVLTQRKRRFFHKIALSKEDLERLRQALKILSEAEKQVR 831


>gi|257055306|ref|YP_003133138.1| hypothetical protein Svir_12630 [Saccharomonospora viridis DSM
           43017]
 gi|256585178|gb|ACU96311.1| DNA polymerase III, delta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 326

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 99/329 (30%), Gaps = 16/329 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++  G ++ L+ E   +   + +           +   E+    + F  E+ S SLFS
Sbjct: 10  PLYLVLGEEELLV-ERAVREAVDTARLADPTAEATRVRVSELT--PAQFA-ELVSPSLFS 65

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIK---SNEIKKNNTLRKIAEKFTSV 137
           + ++++++      ++  D +   +        +++        K   +L     K  +V
Sbjct: 66  EGRVVVLDAAQEISQENADAVLSYVSAPADGITLVVVHSGGGRSKAAKSLPSALRKAGAV 125

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
           +               +   +      I   A   L+  +G D     +   +L      
Sbjct: 126 VTECPKVTKPAEREAFVRNEVRRAGGRIDAPAVAALIDAVGTDLRELASAATQLV--ADS 183

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              + E+ V+        +   ++    + G    A+    +     +    L       
Sbjct: 184 GGSVDEEAVRRYHRGRADVTGFQVAEKAVAGDRAAALESLRWAQQIGVAHVLLADALA-- 241

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
              +  I  +      +   +  +       +++   Q   R W+ + + E +  +    
Sbjct: 242 -DAVRTIAKVSAAGRGNPNHMAGELGMPPWKIRKA--QSQARGWSSSGLAEAMRVVARVN 298

Query: 318 HLARKKKYLEKNIIFQTILYIAQTACKNN 346
              +      +  + + +L I   A    
Sbjct: 299 AEVKGAAANPEYALERAVLDI-VEARDRR 326


>gi|225021707|ref|ZP_03710899.1| hypothetical protein CORMATOL_01735 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945698|gb|EEG26907.1| hypothetical protein CORMATOL_01735 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 322

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 15/290 (5%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +  G+++ L  E                   +++  L       +   E+ S SLF +
Sbjct: 11  VHLIVGAEEFL-AERARLDIVAQLKQQSPEGENLMVTTLRAGDVTESELIELCSPSLFGE 69

Query: 83  KKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
            +I+++  L    K+  D + +  +       II+  N        + +  K   +  + 
Sbjct: 70  DRIVVLTKLEDAGKEPADLILKFAVNPAPGVAIILMHNG---GGRTKALVPKLKKIATVH 126

Query: 142 CYPDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
              +       +  +           + +  Q +LA +G D     + + +L        
Sbjct: 127 -QAEKLKPQERMGWVTNEFRRHNVRPTPDVVQAVLAGVGSDLRELASAVSQLV--ADTGG 183

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           ++T Q V D       +   +I +    G+   A++     L   +   AL      K  
Sbjct: 184 VVTAQAVHDYYAGVAEVSGFDIADYACSGQEQRALVSMRRALQLGLEPAALAAALAMKVS 243

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            + +++ ++   + S          +   +++    +  R W+ + V + 
Sbjct: 244 GIARLYSLRGRVDRSLA---GSLGMHPFVLEKTA--QIARRWSGDAVSDA 288


>gi|262203076|ref|YP_003274284.1| DNA polymerase III subunit delta [Gordonia bronchialis DSM 43247]
 gi|262086423|gb|ACY22391.1| DNA polymerase III delta [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 103/302 (34%), Gaps = 29/302 (9%)

Query: 20  SHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSL 79
           +  + +  G D  L   +I+      S     P  +  + A ++ ++      E+ S SL
Sbjct: 5   TKRLHLLLGDDDFLTGRVISAVSAEQSGLAGTPVPVTRVRAGDVSEHE---LAELLSPSL 61

Query: 80  FSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKF 134
           F++++I+++E+   + ++      +          ++++ +   +  +    L+K     
Sbjct: 62  FAEERIVVVESAAEAGKEPAALIAQAAASLPDGITLMVVHTGGGRAKSMVPALKKAG-AV 120

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS-- 192
               A   +P  ++     + +        +S E  + ++           +EL++L+  
Sbjct: 121 EHATAAPRWPSERMD---FVRQEFRSLGVKVSPEVVEQVVE-------GVGSELRELAAA 170

Query: 193 ---SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
                   D  +    V+        +   E+ +  + G    A+    + L   +P   
Sbjct: 171 CAQLVADTDGKVDRDAVRLYYQGRPEITGFEVADRAVTGNRAAALESLAWALHHGVPHVL 230

Query: 250 LLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
           L     +    + +I  +      +   +  +      P +   +Q   R W+   + + 
Sbjct: 231 LADALAEAVHRIARIRPM---GTGNHFALASELGMP--PRRVKDVQAQARAWDSESIAKA 285

Query: 310 LH 311
           + 
Sbjct: 286 VQ 287


>gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
 gi|150415669|sp|A1RWU6|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
          Length = 413

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS---TFWNEIN 75
            S    + YG        +++   K  S      + L+ LNA +++   +        +N
Sbjct: 45  PSKKAALLYGPPGSGKTSIVHATAKEFS------WELIELNASDVRTREALQQRLLGALN 98

Query: 76  STSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI--KKNNTL 127
           + S+     KIIL++ +       +   L  + E+I K   N  I++ +N+    K   L
Sbjct: 99  TRSVLGYSGKIILLDEVDGISTKEDAGGLQAIVELIEK--SNWPIVLTANDPWDPKLRPL 156

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R + E       I      K  +M ++E          S+E    +  N  GD  A+ N+
Sbjct: 157 RDLCE------LIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAIND 210

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           LQ L+        I+   ++ +        I +I+ + +  K     +     
Sbjct: 211 LQSLAM---GKKTISLADLQILGDRAEQETIFDIVRSVLTAKYPEQALAVTRL 260


>gi|148377717|ref|YP_001256593.1| hypothetical protein MAG_4540 [Mycoplasma agalactiae PG2]
 gi|148291763|emb|CAL59152.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 325

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 125/341 (36%), Gaps = 53/341 (15%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +    GS+K LI + + + KK           +   +   +  +     +  ++ SLFS 
Sbjct: 1   MIFICGSEKFLIEQEVEKIKK---ENSDKTIEIFRFDDQALVSD---LISSASANSLFSG 54

Query: 83  KKIILIENL-----STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKF 134
            K+ LI NL     +T K   D ++++I     N  +  + I           + I  K 
Sbjct: 55  AKLFLIYNLDFFEKATFKDESDNVKDLINALKINKQDKFVFIN----------QNIFSKD 104

Query: 135 TSVLAISC---YPDNKIHLMDLIEESLLIGQK-------------SISKEAKQILLANLG 178
              + I     + +N+  +  +  + +                   IS EA ++L++ + 
Sbjct: 105 KIAVNIWTKFIFENNEHKVKMIEAKEMSESNLFSLAKSLANRYNIHISDEAIKLLISKVN 164

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D +   +EL+KLS+    + +IT + ++          I    NA     +        
Sbjct: 165 NDSLMLNSELKKLSNL---NSIITPEIIESSTETLLGEDIFAFSNALETNDLGIIWARYK 221

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             +   +    L+    Q F +  +I+  K C  +S +++ +     I   +   +   L
Sbjct: 222 EKMLEGVEISVLIGQISQIFIIAHQIYAYKVCQ-LSIDQLSKDLR--INSYRIKKISYFL 278

Query: 299 RIWNKNLVRE---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336
                N +++   +L K+D  +    K   + + I F+  L
Sbjct: 279 SKVGINKIKKMILSLSKLDKDV----KNGLVSEKIGFERFL 315


>gi|239917745|ref|YP_002957303.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665]
 gi|281413760|ref|ZP_06245502.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665]
 gi|239838952|gb|ACS30749.1| DNA polymerase III, delta subunit [Micrococcus luteus NCTC 2665]
          Length = 339

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 116/332 (34%), Gaps = 28/332 (8%)

Query: 22  FVFIFYGSD---KGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            + +  G +      + + + Q  +      H    +  L A E Q           S S
Sbjct: 27  PLMLLKGPEDHAARWVTDRVTQALR----ERHGQLEIHRLRAGEYQ--PGQLAT-AASPS 79

Query: 79  LFSKKKIILIENL-STEKKVLDCLEEIIIKNICN---HIIIIKSNEIKKNNTLRKIAEKF 134
           LF++  +I +E L +     L     ++ +        +++  +   +    L  +A+  
Sbjct: 80  LFAEPTLITVEGLEAMNDAFLADALRLVQQGPGAEDVTLVLRHTGGTRGKKLLEAVAKAG 139

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           T V  +    D +   +  ++      ++ I ++A + L+   G    AS  EL    + 
Sbjct: 140 TVVECVPLKKDEER--LAFVQAEFRDRRRRIDEDAARALIRATG----ASLTELAAACAQ 193

Query: 195 CLED--ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            ++D   ++T + V              + +A + G+   A+ L    +A+ +    +  
Sbjct: 194 LVDDTEGVVTVETVDTYYSGRVEATSFAVADAALGGQAARAVSLVRHAMATGVHPVMITA 253

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
               K + + ++      +     ++       + P +   +Q++ R W    + + +  
Sbjct: 254 ALALKARQVARM----IDARRPAAELPSLLG--VAPFQVRYIQQAARHWTAAGIAQAVEW 307

Query: 313 IDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
           I      A+      +  + + ++ +A    +
Sbjct: 308 IAQADAEAKGASRNPEFAVERAVIRVATAVSR 339


>gi|312898622|ref|ZP_07758012.1| putative DNA polymerase III, delta subunit [Megasphaera
           micronuciformis F0359]
 gi|310620541|gb|EFQ04111.1| putative DNA polymerase III, delta subunit [Megasphaera
           micronuciformis F0359]
          Length = 341

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 112/342 (32%), Gaps = 26/342 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG++  ++ E    F K       +   +   +  +    + T    I+  SLFS   
Sbjct: 6   IIYGTETYMMEEERKSFIKACESDCGEKPEITTFHKDDT---VFTVAENIDGESLFSAAT 62

Query: 85  I-ILI-----------ENLSTEKKVLDCLEEIIIKNICNHIII-IKSNEIKKNNTLRKIA 131
           + +              + S   K  D L E +        ++ I    +   +   K  
Sbjct: 63  LTVWKNPPVLPLKKSGRSRSKTDKSEDLLLERLANTRKGCYVLFIVEGPVDTGSAFYKAL 122

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA--NLGGDRIASR--NE 187
                V A  C    + ++M  ++  L     +++ EA+ ++    +           +E
Sbjct: 123 VPLADVSA--CEAVTEKNIMFHVDTYLKKYGFTLTAEARGLMTEMFHTWSTLSLLYVFSE 180

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L KL+        I+   ++ +   T    +       +       I L     A     
Sbjct: 181 LDKLAI-DPTRKRISADDLEGLFAGTAEKNLFTFGEYFLFRNGEGCIPLMKSLFAKTEGF 239

Query: 248 HALLHGFLQKFQLLEKIHIIKEC-SNISFEKIIQKTEKNIIPMKRNI--LQESLRIWNKN 304
                  + + ++L     +     + +  +++     N  P++ ++  LQ+ L+ W   
Sbjct: 240 MKSTAYLMSRLRMLRSYAELVASHKDKATVELLMTKINNGRPVRGSLYYLQKYLKYWTIK 299

Query: 305 LVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNN 346
            +   +  +       R+   ++++      LY +++  KN 
Sbjct: 300 ELDTLICDLFTLQLRMRRGTAVQEDAEALICLYCSKSVKKNR 341


>gi|331266153|ref|YP_004325783.1| DNA polymerase III subunit delta [Streptococcus oralis Uo5]
 gi|326682825|emb|CBZ00442.1| DNA polymerase III subunit delta [Streptococcus oralis Uo5]
          Length = 345

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 119/335 (35%), Gaps = 29/335 (8%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
           F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +KI
Sbjct: 21  FTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 77

Query: 86  ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135
           +++++     + +K+ L        E  +        ++I +  ++     L K+ ++  
Sbjct: 78  VILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD- 136

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
                      +  L    ++         ++++ + LL   G       +E+QK   + 
Sbjct: 137 -AKVFDAVEAKEQELRQYFQKWSQTQGLQFAEKSFENLLIKSG----FQFSEIQKNLLFL 191

Query: 196 L---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                D +I E+ + + I  T    I ++    +  KI  A  L             L+ 
Sbjct: 192 QSYKSDGVIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKLIA 251

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT-----EKNIIPMKRNILQESLRIWNKNLVR 307
             L +F+   ++ I+ E    S  +I+                +  L++S R  +   ++
Sbjct: 252 VMLGQFRTFTQVKILSEA-GQSESQIVSSLGTYLGRNPNPYQIKFALRDS-RGISLAFLK 309

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             +  +    +  +   Y +  +  + +L IA  A
Sbjct: 310 RAISYLIETDYQIKTGVYEKSYLFEKALLQIATEA 344


>gi|108563615|ref|YP_627931.1| DNA polymerase III subunit delta [Helicobacter pylori HPAG1]
 gi|107837388|gb|ABF85257.1| DNA polymerase III holoenzyme delta subunit [Helicobacter pylori
           HPAG1]
          Length = 340

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K      +
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNAKSDTTKYKYTSDA 129

Query: 137 VLAI---SCYPDNK-----------IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           ++     S   D               L  L +E        IS      L      D  
Sbjct: 130 IVKFFQKSPLKDEAVYARFFIPKTWESLKFL-QERANFLHLDISGHLLNALFETNNEDLS 188

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            S N+L KL+        IT + ++++  +   + ++++I      K  + + + D+ L 
Sbjct: 189 VSFNDLDKLAVL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLK 243

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                  +L G  + F  L       + + +   K +      
Sbjct: 244 EGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|317180973|dbj|BAJ58759.1| DNA polymerase III subunit delta [Helicobacter pylori F32]
          Length = 340

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  +     +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSFFYASDYEKSQITTLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ + +  KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++     S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKFFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALFETNNEDLSV 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPITLEDIQELSSNAGDIDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + + +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFTHIKTTGLMDAKEVLGYAPP 286


>gi|327198333|ref|YP_004306907.1| HolA DNA polymerase III subunit delta [Streptococcus phage Dp-1]
 gi|314912635|gb|ADT64026.1| HolA DNA polymerase III subunit delta [Streptococcus phage Dp-1]
          Length = 297

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 39/241 (16%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             +I YG + GL           +++  +   ++V       + ++ST W  +    L S
Sbjct: 18  PFYILYGEEIGL-----------MNVYLNQMGNVVR------ETSVSTVWKTLTQKGLVS 60

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             +I  + +   ++ + +      + ++    +++   +I K + L K            
Sbjct: 61  NHRIFAVRD--DKEFLSNESRWKRLPDVRYGTLVLMVTKIDKRSKLLKAF---------- 108

Query: 142 CYPDNKIHLMDLIEESLLIGQK----SISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             PDN +    + +  L         +I  +   +++     D     NEL KLS     
Sbjct: 109 --PDNCVEFEKMTDAQLKRHFVSKYSTIDSDMIDMVIQFCLNDYSRIDNELDKLS----R 162

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              +    V+ I+     + I  +++  ++ +   AIM     LA       LL    Q 
Sbjct: 163 LKKVDASVVESIVKHKTEIDIFSLVDDVLEYRPEQAIMKVTELLAKGESPIGLLTLLYQN 222

Query: 258 F 258
           F
Sbjct: 223 F 223


>gi|238899078|ref|YP_002924760.1| DNA polymerase III, delta subunit, probably ATP hydrolase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466838|gb|ACQ68612.1| DNA polymerase III, delta subunit, probably ATP hydrolase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 352

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 116/310 (37%), Gaps = 17/310 (5%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           ++ YG +  L+ E  +  ++            V +      +NI   + E+   SLFS +
Sbjct: 21  YLLYGDEPLLLQESQDHIREAALRRNFTEHFTVTIEGDTEWENIFRIFQEL---SLFSSR 77

Query: 84  K--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---NNTLRKIAEKFTSVL 138
           +  +++  +      + D L +++     N +++++ +++ K   N+   K         
Sbjct: 78  QTLLVIFPHKLLPASMKDRLGQLVQLLHQNILLMMRFHKLTKAQENSPWYKAL--APYAC 135

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            I+C   N   L   I+         I     + L     G+ I + ++L  L S    +
Sbjct: 136 KINCEKPNHQRLPAWIKTRSKSLCFDIDLPCIERLCECYEGN-ILALSQLLTLLSLVYPN 194

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             ++   ++ ++ +       +  NA ++GK   A+++       +     LL       
Sbjct: 195 EQLSLPKIEPLLNNFAHFTPYQWSNALLEGKTERALLILKKLQQEEHEPVILLRILQPDL 254

Query: 259 QLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
            LL  +   + E   I+  +     +  +   +R    ++L+  + N++++ +H      
Sbjct: 255 LLLVTLKRAMAEVPLITLFQ-----QHQVWQSRRTYFTQALQRLSLNVLKQGVHLFYQIE 309

Query: 318 HLARKKKYLE 327
              ++   L 
Sbjct: 310 ISLKQDYALS 319


>gi|71892092|ref|YP_277822.1| DNA polymerase III, delta subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796198|gb|AAZ40949.1| DNA polymerase III, delta subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 342

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 100/271 (36%), Gaps = 16/271 (5%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHII 114
           AL++  +     N    +SLF K++I+ ++      ++  KK +  L   +  ++   + 
Sbjct: 54  ALDMYSDWENICNLFRVSSLFEKRRILSLKFPQNYPVAILKKKVPLLFSFLHDDLVLILY 113

Query: 115 IIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
           I +SN+I KNN   +  +K    + + C       L+  IE      +  I   A Q+L 
Sbjct: 114 IHESNQINKNNIWLQCFKK--IGIFVDCSTPTHTRLIMWIENQAKNMKLVIENLACQLLC 171

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
               G+       L+ LS     D  +    VK I+ D+    +   I + + G    A 
Sbjct: 172 YYYEGNLTLLNQTLRNLSL-IYPDGNLNFIRVKKIVTDSACFNMNHWIESILTGNKQRAD 230

Query: 235 MLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR--- 291
            +        +    LL     +  ++  +         S   +++K +      ++   
Sbjct: 231 RILKKLEYIGVDLELLLCRIKSEILMITNMKYNM-VQGKSLFNLLKKYK----IYRKYHC 285

Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARK 322
            +L  ++   +   + + +  +     + +K
Sbjct: 286 MLLARAVNRLSLYQLYQAIELLAQIELIYKK 316


>gi|254774587|ref|ZP_05216103.1| hypothetical protein MaviaA2_07948 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 325

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%)

Query: 22  FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
            + +  G ++ L+     E++ + +K    +      +  + A ++         E+ S 
Sbjct: 6   PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYE---LAELLSP 62

Query: 78  SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLF+ ++I+++E    + +      L           ++++ S              +  
Sbjct: 63  SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQAL 120

Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             +   C    K    +D + +     +    +E    +L  +G D     +   +L   
Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +    V+        +   +I +  + G I  A     + +    P   L    
Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            +    + +        +    ++  +      P +    Q+  R W+++ V   +  + 
Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
                 +         +   +  +A+ A   N 
Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325


>gi|298735729|ref|YP_003728254.1| DNA polymerase III subunit delta [Helicobacter pylori B8]
 gi|298354918|emb|CBI65790.1| DNA polymerase III subunit delta [Helicobacter pylori B8]
          Length = 340

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISTLFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKI------- 130
              +++++ + +  KK  +    L    ++   ++ +II     K + T  K        
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLIIGLYNAKSDTTKYKYTSEIIVK 132

Query: 131 -AEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E        IS      L      D   S N
Sbjct: 133 SFQKSPLKDEAICARFFIPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYTPP 286


>gi|317154520|ref|YP_004122568.1| DNA polymerase III subunit delta [Desulfovibrio aespoeensis Aspo-2]
 gi|316944771|gb|ADU63822.1| DNA polymerase III delta [Desulfovibrio aespoeensis Aspo-2]
          Length = 330

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I    D  LI     Q ++ ++ +    + +      + +   + FW ++   SLF++ 
Sbjct: 7   LILVCPDPQLIK---TQIEQRLAASGQQGWEVKPFWGDDDEPLPAAFWTDLTIKSLFAQP 63

Query: 84  KIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKS------NEIKKNNTLRKIAEKF 134
           K ++I      +    D L+  +     + + I  ++         I    + R I +K 
Sbjct: 64  KALVIRRAHALRAEHWDKLDAGVKGVSADILPIFCLEGEWKGKKPSIPATLSRRTIYKKA 123

Query: 135 T------SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                      +     ++  L   ++        +    A + L+A L  D +A R EL
Sbjct: 124 RDEGWVWESAGL-----DQASLGGFVKAWAKERGVTFEPGADRALVAALPADAVAVRLEL 178

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
            KL     +  L+  +HV+ ++     +   ++++A
Sbjct: 179 DKLDLAAGDSRLVRREHVE-LVAPVGEMEFFDLMDA 213


>gi|13357888|ref|NP_078162.1| hypothetical protein UU328 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762240|ref|YP_001752410.1| DNA polymerase III delta subunit superfamily protein [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|183508781|ref|ZP_02958247.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|11356922|pir||D82904 hypothetical protein UU328 [imported] - Ureaplasma urealyticum
 gi|6899306|gb|AAF30737.1|AE002130_4 unique hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827817|gb|ACA33079.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|182675726|gb|EDT87631.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 314

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 113/306 (36%), Gaps = 19/306 (6%)

Query: 23  VFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +F+  G ++      I E+   F + + I       + +++   + +     +N  N   
Sbjct: 8   LFLITGDNRLKMDQKINEIATSFDELVKINDQ---EISLISFKNLIEQ-DDLFNS-NKIY 62

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           LF  K +   ENL   K V D L +    N    II I+S +I     +++   KF   +
Sbjct: 63  LF--KNVNWFENLEHLKNVSD-LIDYFFNNHVAIIITIESTKISTAKKIQETIAKFNHQI 119

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               Y +     M  ++E L     S++K   Q ++     +     NEL K+       
Sbjct: 120 TFMTYTNENA--MAFLKEELNQRNLSLNKSIMQTIIQKTNFNINFLNNELDKIELINDFL 177

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
                  + + ICD     I  ++N   Q KI  +I L +  L  K+    +++      
Sbjct: 178 KNHGMFDINNFICDYGEYQIFSLLNLLYQHKINESINLINKMLIDKIDELTIINMLATIM 237

Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
                I ++ E   N +        +  II    ++  + +R ++   + + ++ +    
Sbjct: 238 STHYLIKLLHEKKYNKNVISSSLNQKPYII----DLNLKLIRNYSAKFLLKKMYDLLQLE 293

Query: 318 HLARKK 323
              ++ 
Sbjct: 294 IKVKEN 299


>gi|290580885|ref|YP_003485277.1| hypothetical protein SmuNN2025_1359 [Streptococcus mutans NN2025]
 gi|254997784|dbj|BAH88385.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 346

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 111/358 (31%), Gaps = 67/358 (18%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   ++   F   I     D     F +   +  + + +       + S  
Sbjct: 18  ITVLSGEDFGQYGQMKKLFFNKIGFEPSDLNFSYFDMSETSYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +KI++ +N +              L   E  +   + +  ++I +  ++     L 
Sbjct: 71  FFADEKIVIFDNFADITTDKRTFLNNNELKRFEAYLGNPLSSTKLVICASGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR--- 185
           K+ ++                     +  L   +     E +         D +      
Sbjct: 131 KLLKR---------------------DAQLFEAKVLKEAELRTYFQKRAHKDGLVFESGV 169

Query: 186 ------------NELQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
                       +E+ K    L+SY  +D  I  Q + + I  T    I ++    + G+
Sbjct: 170 FESLLIKSNFDFSEVAKNLTFLTSYK-KDGHIRAQDISEAIPKTLQDNIFDLTQFILTGQ 228

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKN 285
           I  A  L             L+   L +F++  ++ I+    N S  +I+        + 
Sbjct: 229 IDAARDLIRDLRLQGEDEIKLIAVMLGQFRMFTQVKILS-GQNKSETQIVTALSDYLGRK 287

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           + P +        R      +++ +  +    +  +   Y +  +    +L +A    
Sbjct: 288 VNPYQVKFALRDSRTLTLPFLKKAVTLLIETDYAIKSGTYDKDYLFDVALLKLAHENR 345


>gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
 gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis]
          Length = 1105

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 68/194 (35%), Gaps = 21/194 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    ++  L++LS   L+   I+   V
Sbjct: 630 DADIIYTLQWIASKEDIDIDKDALKLIASRSDGSLRDAQMTLEQLSLLGLK---ISVPLV 686

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL          L  +  
Sbjct: 687 QELVGLISDEKLVDLLDLALSADTVNTVKHLRVIMETGVEPLAL-------MSQLATVIT 739

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325
                + +F K   + +      ++ + +E     +   +R+ L  +       R     
Sbjct: 740 DILAGSYNFTKERHRRK---FFRRQPLSKE-----DMEKLRQALKTLSEAEKQLRMSNDK 791

Query: 326 LEKNIIFQTILYIA 339
           L    +   +L +A
Sbjct: 792 L--TWLTAALLQLA 803


>gi|171920076|ref|ZP_02931506.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|186701677|ref|ZP_02971375.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|171902426|gb|EDT48715.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|186700928|gb|EDU19210.1| DNA polymerase III, delta subunit superfamily [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 314

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 113/306 (36%), Gaps = 19/306 (6%)

Query: 23  VFIFYGSDKGL----IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +F+  G ++      I E+   F + + I       + +++   + +     +N  N   
Sbjct: 8   LFLITGDNRLKMDQKINEIATSFDELVKINDQ---EISLISFKNLIEQ-DDLFNS-NKIY 62

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           LF  K +   ENL   K V D L +    N    II I+S +I     +++   KF   +
Sbjct: 63  LF--KNVNWFENLEHLKNVSD-LIDYFFNNHVAIIITIESTKISTAKKIQETIAKFNHQI 119

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               Y +     M  ++E L     S++K   + ++     +     NEL K+       
Sbjct: 120 TFMTYTNENA--MAFLKEELNQRNLSLNKSIMETIIQKTNFNINFLNNELDKIELINDFL 177

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
                  + + ICD     I  ++N   Q KI  +I L +  L  K+    +++      
Sbjct: 178 KNHDMFDINNFICDYGEYQIFSLLNLLYQHKINESINLINKMLIDKIDELTIINMLATIM 237

Query: 259 QLLEKIHIIKECS-NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
                I ++ E   N +        +  II    ++  + +R ++   + + ++ +    
Sbjct: 238 STHYLIKLLHEKKYNKNVISSSLNQKPYII----DLNLKLIRNYSAKFLLKKMYDLLQLE 293

Query: 318 HLARKK 323
              ++ 
Sbjct: 294 IKVKEN 299


>gi|306829713|ref|ZP_07462902.1| DNA-directed DNA polymerase III delta subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428064|gb|EFM31155.1| DNA-directed DNA polymerase III delta subunit [Streptococcus mitis
           ATCC 6249]
          Length = 356

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 102/273 (37%), Gaps = 27/273 (9%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
           F GSD+G    + +Q  K I     D  +    +  E+         E+ S   F+ +KI
Sbjct: 32  FTGSDQGQFGVMKDQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 88

Query: 86  ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135
           +++++     + +K+ L        EE +        ++I +  ++     L K+ ++  
Sbjct: 89  VILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRDA 148

Query: 136 SVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK---- 190
           +V  AI      +  L    ++           ++ + LL   G       +E+QK    
Sbjct: 149 TVFDAIEP---KEQELRQYFQKCSQTQGLQFVGQSFENLLIKSG----FQFSEIQKNLFF 201

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L SY   D +I E+ + + I  T    I ++    +  KI  A  L             L
Sbjct: 202 LQSYK-SDDVIEEKDIVEAIPKTLQDNIFDLTQLILAKKIDLARDLVRDLTLQGEDEIKL 260

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
           +   L +F+   ++ I+ +    +  +I+    
Sbjct: 261 IAVMLGQFRTFTQVKILSDA-GQTESQIVSSLG 292


>gi|227498610|ref|ZP_03928754.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904066|gb|EEH89984.1| predicted protein [Acidaminococcus sp. D21]
          Length = 363

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 107/351 (30%), Gaps = 45/351 (12%)

Query: 4   IESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           + + +F+    K       + +  G+++     +    KK I+  +        LN    
Sbjct: 3   VTADQFLANLRKKGGSCPHLVVAIGNEEYYQKAIKETLKKRIAFDHK----GEELNTWTF 58

Query: 64  QK--NISTFWNEINSTSLFSKKKIILIEN-------------------LSTEKKVLDCLE 102
           +   N+      I S S F     +++ +                      ++  L+   
Sbjct: 59  EDRFNLVDLREAIYSQSFFGGLNWVIVSDPFVLAKTKDATSDPQTKGKSKKKESPLEAFL 118

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDLIE 155
           E++        ++++ + I K  +          + AI+   +           LM  ++
Sbjct: 119 ELVSDIPATTYVLVQLSAIDKRTS------AAKKLGAIAPLVECQPIKWYQTKALMPFLQ 172

Query: 156 ESLLIGQKSISKEAKQIL----LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
           E          + AK ++     A      +    E++K++ +     + T   V+ +  
Sbjct: 173 EQAERYGARFDQGAKALIEDYVAAANEVPLLFLEREIEKIALFAGNRKIWTADDVRQMFS 232

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
               +    +  A  +  +  A+ L      +       L+      +LL ++  +    
Sbjct: 233 QLPQVSNFALGRAIEERNLTLALELIAAERKNDAKFVLALYVVTSSLRLLTQVKAMMAKG 292

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               E      +   I     +  +  R ++   +++ L  +      +R 
Sbjct: 293 ARQDEIAQTLKKNPYI---AKLAMQHARNYSHESLQKALVDLAVLAITSRS 340


>gi|118470289|ref|YP_888841.1| hypothetical protein MSMEG_4572 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171576|gb|ABK72472.1| DNA polymerase III, delta subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 319

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 104/327 (31%), Gaps = 25/327 (7%)

Query: 25  IFYGSDKGLIFELINQFKKNISITY-HDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +  G ++ L+   +    ++I      D   +  L A E+  +      E+ S SLF+++
Sbjct: 9   LVLGDEELLVERAVGAILRDIRKRAGSDDVPVDRLRAGEVSTSE---LAELLSPSLFAEE 65

Query: 84  KIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIAEKFTSVL 138
           +++++E    + +  V               +++I S   +       L+K+  +     
Sbjct: 66  RLVVLEAAAEAGKDAVALIASAAADLPPGTVLVVIHSGGGRAKALADQLKKLGAEVHPCA 125

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS--SYCL 196
            I           D +       +  +S++    +L  +G +      EL  +       
Sbjct: 126 RI----TKPAERADFVRSEFRRLRAKVSEDTVSAVLDAVGSN----IRELAAVCSQLVAD 177

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
               +    V+        +   +I +  + G +  A     + + +  P   L     +
Sbjct: 178 TAGEVDAAAVRRYHSGKAEVKGFDIADKAVVGDVAGAAEALRWAMLAGEPHVVLADALAE 237

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
               + +        +    ++  +      P +    Q+  R W++  V E +  +   
Sbjct: 238 AVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQSRRWSRESVAEAMKVVAAL 291

Query: 317 IHLARKKKYLEKNIIFQTILYIAQTAC 343
               +         +   +  +AQ A 
Sbjct: 292 NADVKGVAADADYALEAAVRRVAQLAA 318


>gi|118462813|ref|YP_880994.1| hypothetical protein MAV_1769 [Mycobacterium avium 104]
 gi|118164100|gb|ABK64997.1| DNA polymerase III, delta subunit [Mycobacterium avium 104]
          Length = 325

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%)

Query: 22  FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
            + +  G ++ L+     E++ + +K    +      +  + A ++         E+ S 
Sbjct: 6   PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYE---LAELLSP 62

Query: 78  SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLF+ ++I+++E    + +      L           ++++ S              +  
Sbjct: 63  SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQSL 120

Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             +   C    K    +D + +     +    +E    +L  +G D     +   +L   
Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +    V+        +   +I +  + G I  A     + +    P   L    
Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            +    + +        +    ++  +      P +    Q+  R W+++ V   +  + 
Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
                 +         +   +  +A+ A   N 
Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325


>gi|217077521|ref|YP_002335239.1| DNA polymerase III, delta subunit superfamily [Thermosipho
           africanus TCF52B]
 gi|217037376|gb|ACJ75898.1| DNA polymerase III, delta subunit superfamily [Thermosipho
           africanus TCF52B]
          Length = 312

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
            +    +LI E L      +  E    L  N+G D  A  NE++KL  +   +  +    
Sbjct: 109 EEEKWKNLISEMLKEHGLEVKGEIIDFLFENVGPDEFALYNEIKKLKVF---EKNLNLDI 165

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
           +KD+I    +  +++   A  + K  +  +L D  + +      +++     F  L +I
Sbjct: 166 LKDVIHKYTLSKLDDFCFAISEMKEESFRLLKD--VVNDYEPIIIVYTLSSHFISLFRI 222


>gi|167957235|ref|ZP_02544309.1| putative DNA polymerase III, gamma/tau subunits [candidate division
           TM7 single-cell isolate TM7c]
          Length = 489

 Score = 49.2 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 76/258 (29%), Gaps = 38/258 (14%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-------KNISTFWNEIN 75
            ++  G        +       I+   +D      L+ +EI         N+     +  
Sbjct: 39  AYLLTGPRGTGKTSVARILAHKITGLPYD-IEDNNLDIIEIDAASNNGVDNVRDLREKAL 97

Query: 76  STSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK----------N 124
              + S+KK+ +I+ +    K   + L +II +   + + I+ + +  K           
Sbjct: 98  VAPIKSQKKVYIIDEVHMLSKSAFNALLKIIEEPPEHVVFILATTDFDKVPDTIVSRTQR 157

Query: 125 NTLRKIAEK--FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
              R I E      +  I+                       I  +A  ++    GG   
Sbjct: 158 YNFRLIDESTVADHLAFIA-----------------KEESIKIDTDALNLIAERGGGSLR 200

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            S + L ++     ++  IT   V+  +       I  I  A + G     I        
Sbjct: 201 DSISLLDQIQHTESKNGEITRSDVEASLGLATKDEINAIGEAILSGDALKIITAVRQPEL 260

Query: 243 SKMPSHALLHGFLQKFQL 260
             + + ++        Q 
Sbjct: 261 RGIGAVSVADQLYNWIQR 278


>gi|270292526|ref|ZP_06198737.1| DNA polymerase III, delta subunit [Streptococcus sp. M143]
 gi|270278505|gb|EFA24351.1| DNA polymerase III, delta subunit [Streptococcus sp. M143]
          Length = 345

 Score = 49.2 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 118/334 (35%), Gaps = 27/334 (8%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
           F G+D+G    L +Q  + I     D  +    +  E+         E+ S   F+ +KI
Sbjct: 21  FTGTDQGQFEVLKSQVLRQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEKI 77

Query: 86  ILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKFT 135
           +++++     + +K+ L        EE +        ++I +  ++     L K+ ++  
Sbjct: 78  VILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRDA 137

Query: 136 SVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           +V  AI      +  L    ++           ++ + LL   G       +E+QK   +
Sbjct: 138 TVFDAI---EAKEQELRQYFQKWSQKQGLQFVGQSFENLLIKSG----FQFSEIQKNLLF 190

Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS---H 248
                 D +I E+ + + I  T    I ++    +  KI  A  L               
Sbjct: 191 LQSYKSDGVIEEKDIVEAIPKTLQDNIFDLTQLILGKKIDQARDLVRDLTLQGEDEIKLI 250

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
           A++ G  + F  ++ +    +  +     +     +N  P +        R  +   ++ 
Sbjct: 251 AVMLGQFRTFTQVKILSEAGQTESQIASSLGTYLGRNPNPYQIKFALRDSRGISLAFLKR 310

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
            +  +    +  +   Y +  +  + +L IA  A
Sbjct: 311 AISYLIETDYQIKTGVYEKGYLFEKALLQIAAEA 344


>gi|283769393|ref|ZP_06342292.1| DNA polymerase III, delta subunit [Bulleidia extructa W1219]
 gi|283104050|gb|EFC05434.1| DNA polymerase III, delta subunit [Bulleidia extructa W1219]
          Length = 333

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 114/324 (35%), Gaps = 30/324 (9%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTS 78
           + VF+  G D+    E ++  K+   I       + + +A +++       F +  + + 
Sbjct: 2   NHVFLISGDDRCRKEEYLSFLKQTKEIA---DGEVEIFDASKVKYFSFPLFFRSLASRSL 58

Query: 79  LFSKKKIILIENL------------STEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKN 124
           L + K+++++++                +     +   +       +++I  +E  +   
Sbjct: 59  LVNGKRMVILKDAYFLSTCHTKGNDGDLEYFQREMSLYLKDPNDQIVLVIYMDEETLDAR 118

Query: 125 NTLRKIAEKFT----SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
             L K  +K      + +A+  +           +E L   +  + +EA + LL  +  D
Sbjct: 119 KKLVKFLKKEAIDQQTFMALKPWE-----FPAYAKEQLHNEKIFLDQEAFEELLLRVQHD 173

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           R   +  ++KL    +       + ++++I  +  + +  + N  ++G +     +   F
Sbjct: 174 RFLLKKAIEKLQL--VPKKRYGVKEIEEMISYSVEVDVFALGNVFLEGNLKKTWKILRRF 231

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
             + + + A +     + + L  I  + E         I+   K     K          
Sbjct: 232 QQAGLDTQAQMALLAFRIRNLYDIKELFELGYDEETIAIRLRMKPYAIRKGLESCSCCSA 291

Query: 301 WNKNLVRETLHKIDHRIHLARKKK 324
            +   + + L  +D  I   ++  
Sbjct: 292 LSLLKILKELGDLDQEIKTGKRDP 315


>gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM
           9941]
 gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941]
          Length = 429

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 11/115 (9%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L  L+E  L      IS EA+  LL   GGD   +R  L  L         +    ++
Sbjct: 171 GDLEALLERGLSELGVGISGEARDYLLRLAGGD---ARRMLNALEVAASGRREVGVAEIE 227

Query: 208 DIICDTHV--------LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             +    +          +   I +   G    A+      + +      +    
Sbjct: 228 RALGQRALRYGREEHYDVVSAFIKSVRGGDPDAALHYLARMIEAGEDPVFIARRL 282


>gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
 gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
          Length = 922

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +E+ +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +          +   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDPA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGTITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                +      LA    +  ++   +Q  + L
Sbjct: 260 DGPKLLSYIHDALAEGRDATQIMEALIQHVRAL 292


>gi|329728354|gb|EGG64791.1| putative DNA polymerase III, delta subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 117

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
           +S  +   YG    L+ +   +       +  D F+ V  N  E +        E  +  
Sbjct: 1   MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAP--IVEETLTLP 58

Query: 79  LFSKKKIILIENL---STEKKV------LDCLEEIIIKNICNHIIIIK 117
            FS KK IL++N    + EK        +D L E I K    ++I+ +
Sbjct: 59  FFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFE 106


>gi|227495100|ref|ZP_03925416.1| DNA polymerase III, delta subunit [Actinomyces coleocanis DSM
           15436]
 gi|226831552|gb|EEH63935.1| DNA polymerase III, delta subunit [Actinomyces coleocanis DSM
           15436]
          Length = 310

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 112/335 (33%), Gaps = 47/335 (14%)

Query: 30  DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIE 89
           ++ L  +      +   +       +  + A   +         + S SLF++ + + I 
Sbjct: 7   EESLFADRAVSLIRKNLLKADPGTEISTVEAATYES--GQLAVAV-SPSLFAESRFVYIP 63

Query: 90  NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY----- 143
            +      +++ L + +       +I+++ N     N+ RK+       L +  Y     
Sbjct: 64  QVEQANTALVEDLLKYVTTPEPQVVILLRHNG---GNSARKLL-TELQNLQVPAYIAPKL 119

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL-QKLSSYC-----LE 197
            ++   +  +I+E+       I  +A   L+       +A R+EL + L+          
Sbjct: 120 ANDGERIKCVIDEA-RSLGGRIDNDAAAALV-------LAMRSELPEILAVVSQLVSDYP 171

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             +IT   V++       +   E++ A I G +  A+      L+  +   ++      K
Sbjct: 172 GEVITANLVEEYQAGKREVDGYEVVQAAIDGDLATALTHLRHALSCGVTGPSITGAMAFK 231

Query: 258 FQLLEKI----HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            + L K+            ++   + +                SLR WN+  +RE     
Sbjct: 232 LRQLAKVSTIPRRTAYEMGMAPFMVQKTQG-------------SLRTWNEMALREAFR-- 276

Query: 314 DHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
              I  A  K      +     L I   A + + F
Sbjct: 277 ACAIADAEVKGESRDPVYALEKLLITV-ARRGSKF 310


>gi|41408323|ref|NP_961159.1| hypothetical protein MAP2225c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396679|gb|AAS04542.1| hypothetical protein MAP_2225c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 325

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 102/333 (30%), Gaps = 20/333 (6%)

Query: 22  FVFIFYGSDKGLIF----ELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
            + +  G ++ L+     E++ + +K    +      +  + A ++         E+ S 
Sbjct: 6   PLHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPINRMRAGDVSTYE---LAELLSP 62

Query: 78  SLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           SLF+ ++I+++E    + +      L           ++++ S              +  
Sbjct: 63  SLFADERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSG--GGRAKALATELQSL 120

Query: 136 SVLAISCYPDNK-IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             +   C    K    +D + +     +    +E    +L  +G D     +   +L   
Sbjct: 121 GAVVHPCARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLV-- 178

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 +    V+        +   +I +  + G I  A     + +    P   L    
Sbjct: 179 ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADAL 238

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
            +    + +        +    ++  +      P +    Q+  R W+++ V   +  + 
Sbjct: 239 AEAIHTIGR----VGPLSGDPYRLAAQLGMP--PWRVQKAQKQARYWSRDSVATAMKVVA 292

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
                 +         +   +  +A+ A   N 
Sbjct: 293 TLNANVKGAVADADYALESAVRRVAELAGGRNR 325


>gi|15612597|ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
           C-125]
 gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
           C-125]
          Length = 564

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L+  ++E L         EA  ++     G    S + L +  S+   D  +T + V
Sbjct: 180 NDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFA--DERVTVEDV 237

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             I        + +++ +  +G+   A+ L +  LA+       +   +  ++ L     
Sbjct: 238 LAITGAVSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLMLFKA 297

Query: 267 IKECSNI 273
             E S +
Sbjct: 298 APEASQL 304


>gi|150398618|ref|YP_001329085.1| DNA polymerase III subunits gamma and tau [Sinorhizobium medicae
           WSM419]
 gi|150030133|gb|ABR62250.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium medicae
           WSM419]
          Length = 625

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +  + 
Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEVET 258

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    I+G +  A+        +      +L        L+ ++ 
Sbjct: 259 VRSMLGLADRARIVDLFEHIIKGDVAAALHEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +  N      I++            +    RIW        L  I      AR    
Sbjct: 319 YVPDAINDQSLSEIER-RHGAEFAGSVAVTTLSRIWQM-----LLKGIPEAESSARPAGA 372

Query: 326 LEKNIIF 332
            E  +I 
Sbjct: 373 AEMVLIR 379


>gi|45644668|gb|AAS73056.1| predicted DNA polymerase III, delta subunit [uncultured marine
           gamma proteobacterium EBAC20E09]
          Length = 325

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           K++ KS K       +F  YGS+  LI +  +Q            FS  ++   E  K+ 
Sbjct: 10  KYLDKSPK-------IFFLYGSEIVLINDSADQINDFFKSKG---FSERIILTKENFKDA 59

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK---KN 124
                +    SLF+ K II I + S+   +   +  I      ++++II  + IK   KN
Sbjct: 60  HKIIMQNAGGSLFASKVIIEIIHNSSGTTLPKDILSIFDSQNFDNVVIIVRSTIKKVNKN 119

Query: 125 NTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
           +   K+ +  +  L I C           +++ L    KS++ E  + L +   G+ +A 
Sbjct: 120 SAWVKLID--SKALIIECNKLKTYEEKAWVKDRLDFMNKSVADEYTERLTSMFAGNLVAQ 177

Query: 185 RNELQKL-SSYCL--EDILITEQHVK 207
            NE+  L  +Y    E+  I     +
Sbjct: 178 NNEINLLKITYSKNTENKKIEYDDAE 203


>gi|24379101|ref|NP_721056.1| DNA polymerase III subunit delta [Streptococcus mutans UA159]
 gi|24377002|gb|AAN58362.1|AE014906_8 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 346

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 111/358 (31%), Gaps = 67/358 (18%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G   ++   F   I     D     F +   +  + + +       + S  
Sbjct: 18  ITVLSGEDFGQYGQMKKLFFNKIGFESSDLNFSYFDMSETSYQDAEMD-------LESLP 70

Query: 79  LFSKKKIILIENLST---------EKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +KI++ +N +              L   E  +   + +  ++I +  ++     L 
Sbjct: 71  FFADEKIVIFDNFADITTDKKTFLNNNELKRFEAYLGNPLSSTKLVICASGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR--- 185
           K+ ++                     +  L   +     E +         D +      
Sbjct: 131 KLLKR---------------------DAQLFEAKVLKEAELRTYFQKRAHKDGLVFESGV 169

Query: 186 ------------NELQK----LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
                       +E+ K    L+SY  +D  I  Q + + I  T    I ++    + G+
Sbjct: 170 FESLLIKSNFDFSEVAKNLTFLTSYK-KDGHIRAQDISEAIPKTLQDNIFDLTQFILTGQ 228

Query: 230 IYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK----TEKN 285
           I  A  L             L+   L +F++  +I I+    N S  +I+        + 
Sbjct: 229 IDAARDLIRDLRLQGEDEIKLIAVMLGQFRMFTQIKILS-GQNKSETQIVTALSDYLGRK 287

Query: 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343
           + P +        R      +++ +  +    +  +   Y +  +    +L +A    
Sbjct: 288 VNPYQVKFALRDSRTLTLPFLKKAVTLLIETDYAIKSGTYDKDYLFDVALLKLAHENR 345


>gi|307637918|gb|ADN80368.1| hypothetical protein hp908_1246 [Helicobacter pylori 908]
 gi|325996522|gb|ADZ51927.1| hypothetical protein hp2018_1210 [Helicobacter pylori 2018]
 gi|325998110|gb|ADZ50318.1| putative DNA polymerase III delta subunit [Helicobacter pylori
           2017]
          Length = 340

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKRNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIII---IKSNEIKK----NNTLRK 129
              +++++ + +  KK  +       + + +   N +II      ++  K    ++T+ K
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYHSKSDTTKYKYTSDTIIK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E   + Q  IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICARFFTPKTWESLKFLQERANVLQLDISNHLLNALFETNNEDLGVSFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT ++++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEYIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + + +   K +      
Sbjct: 248 DADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPP 286


>gi|58697229|ref|ZP_00372626.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58536440|gb|EAL59856.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 234

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 19/187 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-CYPDNKIHL-MDL 153
              + L + + +   +   I+ + EIKK             +  I+ C   +  ++ +  
Sbjct: 47  SAFNALLKTLEEPPSSVKFILATTEIKK-----------IPITIIARCQRFDLHNIPVAK 95

Query: 154 IEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           I E L         SI K A +++  + G     +   + +   Y  +D  I+ ++V DI
Sbjct: 96  IVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYS-KDGAISTKNVTDI 154

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A ++G +  A+ + D  +       ++  G LQ  QL+ +  I KE
Sbjct: 155 LGLVDKDIIFDLLGAILEGDLQKALSVFDKAVK-TANPLSIFEGLLQTIQLVCRFLITKE 213

Query: 270 CSNISFE 276
             N   E
Sbjct: 214 IDNAVTE 220


>gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium
           nodulans ORS 2060]
 gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           nodulans ORS 2060]
          Length = 605

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 55/171 (32%), Gaps = 4/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+  +++       +   EA   +     G    S + L +          +T + 
Sbjct: 213 EAGTLIAHLQKICEAEGVAAEPEALAGIARAAEGSVRDSLSLLDQAI--AHGAGRVTAET 270

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G   +A         +      +L    +   L+ ++ 
Sbjct: 271 VRDMLGLADRARIIDLFEAAMRGDAPSAFAELRAQHEAGADPSVVLQDLAEFTHLVTRLK 330

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  E +         +  +      R  ++   R W   ++ + + ++   
Sbjct: 331 VAPETARSDSALSEAERARGSDFADRLSVRALSRAW--QILLKAIPEVQAA 379


>gi|309800681|ref|ZP_07694822.1| DNA polymerase III subunit delta [Streptococcus infantis SK1302]
 gi|308115688|gb|EFO53223.1| DNA polymerase III subunit delta [Streptococcus infantis SK1302]
          Length = 229

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    +  Q  K I     D  +    +  E+  +  +   E+ S   F+ +K
Sbjct: 20  LFTGADQGQYEIMKTQVLKQIGYDSAD-LNFAYFDMKEV--DYKSLELELVSLPFFADEK 76

Query: 85  IILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I++++   +L+T KK       L   EE +        ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFLDLTTAKKRYLSDDELKAFEEYLENPSPTSKLVIFAEGKLDSKRRLVKLLKRD 136

Query: 135 TSV-LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             +  A+              ++       +   ++ + LL   G       +E+QK   
Sbjct: 137 AKIFEALEPKEQEMRS---YFQKWAQEQGLTFDGKSFEQLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEI 221
           + L   +  LITE+ + + I  T    I ++
Sbjct: 190 FLLSYKDGGLITEEDIVEAIPKTLQDNIFDL 220


>gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1088

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 77/239 (32%), Gaps = 25/239 (10%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           + +++ +     + ++ S  +   + +    +KF       C       +++ ++     
Sbjct: 478 ISKVVERAPRRVVFVLISPNLDLPHIIMSRCQKFFFPKLKEC------DIVNTLQWICTS 531

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               + ++A +++ +   G    +   L +LS        IT   V+++        +  
Sbjct: 532 DGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRITMPLVQELAGLVSDDKLVN 588

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           +++  +     N +        + +   +L          L  I         +F +  +
Sbjct: 589 LLDLALSADTANTVKALRDITETGVEPLSL-------MSQLATIITDILAGTYTFAQ--E 639

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           +  +     KR  L +     +   +R+ L  +       R     +   +   +L +A
Sbjct: 640 RIRRKFF--KRPTLSKE----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 691


>gi|296126216|ref|YP_003633468.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
 gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
           DSM 12563]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 59/191 (30%), Gaps = 10/191 (5%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L  +++  L        +EA  ++     G    S   L+K+ +Y  +   IT   V 
Sbjct: 183 EDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSADVN 242

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++   +  +++E  +  +     +            +      +  ++  +++  I   
Sbjct: 243 AVVGGNNFSFVKEFFDIIMSENKKSYFEFVKKLFEDAVDPRTFTNSVIEYMRVVLMIKSG 302

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327
            +   +            I   +R+ L+     ++ + +   L  I       R      
Sbjct: 303 IDDIKLLE----------ITENERDDLKVFANHYSDDEIERILDYILLTEERIRSASNPR 352

Query: 328 KNIIFQTILYI 338
                + +L +
Sbjct: 353 TIFEMRMLLLL 363


>gi|307700533|ref|ZP_07637568.1| DNA polymerase III, delta subunit family protein [Mobiluncus
           mulieris FB024-16]
 gi|307614284|gb|EFN93518.1| DNA polymerase III, delta subunit family protein [Mobiluncus
           mulieris FB024-16]
          Length = 435

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220
            + +   A   L+  LG +         +L          +    V+  +         +
Sbjct: 254 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 313

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I +A + G +  A+      L   +    ++     K + L ++        +    ++ 
Sbjct: 314 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 372

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             +     M R  ++  L  W+   +   L  +       +      +  +   IL + +
Sbjct: 373 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 431

Query: 341 TACK 344
            A K
Sbjct: 432 CARK 435


>gi|315613376|ref|ZP_07888285.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315314611|gb|EFU62654.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 345

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 120/335 (35%), Gaps = 27/335 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +K
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDPAD-LNFAYFDMKEVAYK--DLELELVSLPFFADEK 76

Query: 85  IILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKIAEKF 134
           I+++++     + +K+ L        E  +        ++I +  ++     L K+ ++ 
Sbjct: 77  IVILDHFVDITTAKKRFLTDDELKSFEAYLDNPSPTTKLLIFAEGKLDSKRRLVKLLKRD 136

Query: 135 TSVL-AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
            +V  AI      +  L    ++         ++++ + LL   G       +E+QK   
Sbjct: 137 ATVFDAI---EAKEQELRQYFQKWSQTQGLKFAEKSFENLLIKSG----FQFSEIQKNLL 189

Query: 194 YCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS--- 247
           +      D +I E+ V + I  T    I ++    +  KI  A  L              
Sbjct: 190 FLQSYKSDGVIEEKDVVEAIPKTLQDNIFDLTQFILAKKIDLARDLVRDLTLQGEDEIKL 249

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
            A++ G  + F  ++ +    +  +     +     +N  P +        R  +   ++
Sbjct: 250 IAVMLGQFRTFTQVKILSEAGQTESQIASSLGTYLGRNPNPYQIKFALRDSRGISLAFLK 309

Query: 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
             +  +    +  +   Y +  +  + +L IA  A
Sbjct: 310 RAISYLIETDYQIKTGVYEKGYLFEKALLQIAAEA 344


>gi|307306395|ref|ZP_07586139.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
           BL225C]
 gi|306902237|gb|EFN32834.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
           BL225C]
          Length = 626

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +  + 
Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    I+G +  A+        +      +L        L+ ++ 
Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +  N      I++T           +    R+W        L  I      AR    
Sbjct: 319 YVPDAVNDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372

Query: 326 LEKNIIF 332
            E  +I 
Sbjct: 373 AEMVLIR 379


>gi|15963983|ref|NP_384336.1| DNA polymerase III subunits gamma and tau [Sinorhizobium meliloti
           1021]
 gi|15073159|emb|CAC41667.1| Putative DNA polymerase III subunit TAU protein [Sinorhizobium
           meliloti 1021]
          Length = 626

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +  + 
Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    I+G +  A+        +      +L        L+ ++ 
Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +  N      I++T           +    R+W        L  I      AR    
Sbjct: 319 YVPDAVNDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372

Query: 326 LEKNIIF 332
            E  +I 
Sbjct: 373 AEMVLIR 379


>gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 856

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 78/222 (35%), Gaps = 17/222 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +E+ +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +          +   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDPA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGTITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
                +      LA    +  ++   +Q  + L    +  + 
Sbjct: 260 DGPKLLSYIHDALAEGRDATQIMDALIQHVRALLVGKVATDA 301


>gi|313672436|ref|YP_004050547.1| DNA polymerase iii delta [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939192|gb|ADR18384.1| DNA polymerase III delta [Calditerrivibrio nitroreducens DSM 19672]
          Length = 303

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 82/230 (35%), Gaps = 15/230 (6%)

Query: 34  IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST 93
           I + +    K++       F    L       +I  F+   +S  LF ++ I ++++   
Sbjct: 19  IEDKLRDLVKDVDQDSVRYFYGDEL-------DIEGFFEYTSSIPLFYEQNIAVLKHAED 71

Query: 94  EK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152
            K K+ + + E + K   N +I+   +E       +K  E F  ++      + K     
Sbjct: 72  LKEKLKNEILEGLSKIEANFVILTFLDEKPVEENYKKFKESFNIII------EPKRSFNA 125

Query: 153 -LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            +I++        +  +  + +      D +  +NEL+K+  +   +   +++ +  ++ 
Sbjct: 126 QMIQQYFKDEGLIVGVDTAKYIFEMCNKDPMILKNELEKIKIFYNYEKPRSDEEIISLVS 185

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
            +    I + I       +   + +    +        + +   +    L
Sbjct: 186 FSRSESIYQFIKNFFSKDLNKTLAIFKVIVDDGESVERIFYELSRHIVSL 235


>gi|297566912|ref|YP_003685884.1| DNA polymerase III subunit delta [Meiothermus silvanus DSM 9946]
 gi|296851361|gb|ADH64376.1| DNA polymerase III, delta subunit [Meiothermus silvanus DSM 9946]
          Length = 311

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 22/210 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGD---------RIASRNELQKLSSYCLE 197
              L+  IE          +    Q L + LG             A + EL KL+     
Sbjct: 107 GKDLVRWIENRAKAMGLKTNAAIHQYLASLLGSRSSAENPALGLEALQRELDKLTLVTPP 166

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              IT + V+ ++     +   +++ A  +GK+  A       +        +L     +
Sbjct: 167 ---ITLEKVQALVALEAPISGFDLVRAVTEGKVSAAFRQLQGLMERGEDPIRILGALSWQ 223

Query: 258 FQLLEK--IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
           +  L +   H+ ++      E             +   L +S+   +  ++   L  +  
Sbjct: 224 YAKLARAWAHLNEDPLLGESEAASLLGMHPYAAKQTLALAKSV---DAEMLDRALETLVK 280

Query: 316 RIHLAR--KKKYLEKNIIFQTILYIAQTAC 343
               A+  +   L    + + +  ++  A 
Sbjct: 281 AEQAAKTGRDPRLA---LEKAVAELSAQAR 307


>gi|255018444|ref|ZP_05290570.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           F2-515]
          Length = 172

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G++  +I E       NI       F+   L+  E+   I     E  S   F 
Sbjct: 15  PVYLIIGTEDYIINETKQLLIDNILEGEEVEFNYANLDLEEM--PIEVVVQEAESMPFFG 72

Query: 82  KKKIILIEN---LSTEKKV------LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
            K++++  N   L+TEK           LE  + + +   ++   +   K +   +    
Sbjct: 73  DKRLVMANNPLFLTTEKSKNKVEHDTAKLEAYLNEPVDYSVLCFVARVEKLDERKKLTKL 132

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAK 170
              +   I     N+  L   IE  L      +S+EA 
Sbjct: 133 LKKTATVIEAKRPNENELKKWIEAKLSENNMQMSQEAI 170


>gi|237737232|ref|ZP_04567713.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421094|gb|EEO36141.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 330

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
                  ++ F++ +++ S+FS K++++++ + + K +    + + + N+    III   
Sbjct: 35  FDASLDEVTQFFDSVSTNSIFSPKELVILKRVESFKNLEGIAKSLKMYNLTQKEIIIIYE 94

Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171
           E      K  N + +K  + F  +  I CY   + K  ++  +++ L I +    K    
Sbjct: 95  EFLNDFGKIKNPIPKKTLDSFKEIAEIICYRKENEKKAIIFYLQQELNISEYEAEK---- 150

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
             +  +G D    +NE +K+ ++ L+        +K ++       ++ +I
Sbjct: 151 -FVELVGDDFFKVKNEAEKVKNF-LDGETFNLDKIKPLLSINEDFNLKTLI 199


>gi|225868910|ref|YP_002744858.1| DNA polymerase III delta subunit [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702186|emb|CAW99900.1| putative DNA polymerase III delta subunit [Streptococcus equi
           subsp. zooepidemicus]
          Length = 353

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 25/274 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +  G D G    +     K I+    D     F +        + +       + S  
Sbjct: 18  ITVVAGEDIGQYSHMKALLLKKIAFDQADLTYSYFDMSEALYQTAEMD-------LVSMP 70

Query: 79  LFSKKKIIL---IENLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +K+++   + +++T KK       L   E+ +   +    ++I +  ++     L 
Sbjct: 71  FFADQKVVIFDHLLDITTSKKSYLKEKELKAFEDYLENPVETTRLVIFAPGKLDGKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI ++    L     P          ++       S +  A   LL     D       +
Sbjct: 131 KILKRD--ALIFEASPLKAAEKRTYFQKYSHQLDLSFASGAFDQLLLKSNDDFSQIMKNM 188

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             L +Y  +   IT + +   I  +    + ++    +QGKI  A  L      S     
Sbjct: 189 TFLKAYK-KSGSITVEDIAQAIPKSLRDNVFDLTRLVLQGKIDAARELVHDLRLSGEDDI 247

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            L+   L +F+L  ++  +   S  + ++++   
Sbjct: 248 KLIAIMLGQFRLFLQLATLV-RSGKTEQQLVTSL 280


>gi|255321381|ref|ZP_05362541.1| DNA polymerase III, delta subunit family [Campylobacter showae
           RM3277]
 gi|255301534|gb|EET80791.1| DNA polymerase III, delta subunit family [Campylobacter showae
           RM3277]
          Length = 328

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 112/329 (34%), Gaps = 23/329 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ YG+D       I  F K I   + D F ++ L   E     +   + +   SLF   
Sbjct: 19  FLLYGAD----EYQIELFAKEILAKFKD-FEILSLYYDEYDFEAAR--SHLCEPSLFGDS 71

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT-SVLAISC 142
            ++ ++  S +K     L+ +I         + +    + ++    + +      +  + 
Sbjct: 72  PLLHVK--SNKKIPTKELKILIEVCKNGGAFVFEL--FEPDSK--AVFDTQKAFGVNFAR 125

Query: 143 Y--PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +  P +    ++L+    +    +I+K A   L      +   + +EL KL+S    +  
Sbjct: 126 FFKPGSPEEAVNLLGRQAVKMNLNITKNALFELYRIHNENLYLAASELNKLASL---NEP 182

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           + E  V+ ++     +  ++  +  I  K   A                 ++   + F  
Sbjct: 183 VNENIVRSLVFSLSSVSFDDFFDKFIALKDIRAD-FFSCADDGNFNEILFINSLYRAFFR 241

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
           L K+H   + +     K          P   N L+      N    +E    ++      
Sbjct: 242 LFKLHAGIKITGQFDIKETLGYAPP--PNVANELKRQCLAVNLKAYKEIFTALNLAEFEL 299

Query: 321 RKKKYLE-KNIIFQTILYIAQTACKNNNF 348
           +    L+ K  +   +L +     KN+ +
Sbjct: 300 KTNSALDKKTFLLSCVLGLQNLIGKNSKY 328


>gi|304360729|ref|YP_003856860.1| putative DNA polymerase III [Clostridium phage phiCTP1]
 gi|302495588|gb|ADL40368.1| putative DNA polymerase III [Clostridium phage phiCTP1]
          Length = 302

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 36/310 (11%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +++F G + G++   + Q K+ +       ++   L+             ++N+ SLF
Sbjct: 16  RNLYVFTGDEVGIMNMYLKQIKQKVV------WTSSFLD----------VARKLNNNSLF 59

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
              K   I  +  +  +L    E I   I    II+    + K +  +K  E       I
Sbjct: 60  DSNKDT-IYVVYQDDSLLKMDTEKIRNLIGTSHIILVYPHLDKRSKFKKAFESD----LI 114

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
              P  +  L+  I +     +  IS      L+   GG+      EL KL         
Sbjct: 115 EFKPLTRKQLIYYITK-----KVDISDRVAGELVDLCGGNFTRINLELDKLV----RLGP 165

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+   + D I       I +  NA +  K   +             S  +L      F+ 
Sbjct: 166 ISINTIYDNIAPAPKDVIFDFCNAVVSKKQELSFDYLVNLKYRNESSIKILSILYTTFRN 225

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
              +   K   +          + NI       +++++  ++ N + + +  I H    +
Sbjct: 226 TMIVQAQKNKLDKDI-----AAKYNISIWIVKNIRKTMGKFSLNQLVKIMDIIQHAE-QS 279

Query: 321 RKKKYLEKNI 330
            K   LE+ I
Sbjct: 280 IKTGKLEEAI 289


>gi|291320380|ref|YP_003515643.1| hypothetical protein MAGa4760 [Mycoplasma agalactiae]
 gi|290752714|emb|CBH40688.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 320

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 125/341 (36%), Gaps = 53/341 (15%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +    GS+K LI + + + KK           +   +   +  +     +  ++ SLFS 
Sbjct: 1   MIFICGSEKFLIEQEVEKIKK---ENSDKTIEIFRFDDQALVSD---LISSASANSLFSG 54

Query: 83  KKIILIENL-----STEKKVLDCLEEIIIK---NICNHIIIIKSNEIKKNNTLRKIAEKF 134
            K+ LI NL     +T K   D ++++I     N  +  + I           + I  K 
Sbjct: 55  AKLFLIYNLDFFEKATFKDESDNVKDLINALKINRQDKFVFIN----------QNIFSKD 104

Query: 135 TSVLAISC---YPDNKIHLMDLIEESLLIGQK-------------SISKEAKQILLANLG 178
              + I     + +N+  +  +  + +                   IS  A ++L++ + 
Sbjct: 105 KIAVNIWTKFIFENNEHKVKMIEAKEMSESNLFSLAKSLTNRYNIHISDGAIKLLISKVN 164

Query: 179 GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLAD 238
            D +   +EL+KLS+    + +IT + ++          I    NA     +        
Sbjct: 165 NDSLMLNSELEKLSNL---NSIITPEIIESSTETLLGEDIFAFSNALETNDLGIIWARYK 221

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             +   +  + L+    Q F +  +I+  K C  +S +++ +     I   +   +   L
Sbjct: 222 EKMLEGVEINVLIGQISQIFIIAHQIYAYKVCQ-LSIDQLSKDLR--INSYRIKKISYFL 278

Query: 299 RIWNKNLVRE---TLHKIDHRIHLARKKKYLEKNIIFQTIL 336
                N +++   +L K+D  +    K   + + I F+  L
Sbjct: 279 SKVGINKIKKMILSLSKLDKDV----KNGLVSEKIGFERFL 315


>gi|157736501|ref|YP_001489184.1| DNA polymerase III subunit delta [Arcobacter butzleri RM4018]
 gi|157698355|gb|ABV66515.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 326

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 106/323 (32%), Gaps = 25/323 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++FYG    L+ +      +           +  L   E     +   +++  +SLF
Sbjct: 16  FKTYMFYGQSTFLVEQYSLSIARMFGQDD----EIEKLYFEEYDFKYAK--DKLLQSSLF 69

Query: 81  SKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----T 135
           S   I+ I+ +    K+ LD L E    N  + ++I    +    +   K  E      T
Sbjct: 70  SSNNILFIKIDKKIPKRELDVLIEACNANPDSTLVIACMGD----SDF-KTMETSFSLKT 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +  +    +     +E    + Q      A   L      D     N+L+KL+   
Sbjct: 125 NSACVRFFQPTDLEATKFLEYEAKMLQIQYEVSALNHLYFMHKNDLALCVNDLKKLAIL- 183

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D LIT   V         +  E+ +   + GK  ++       L   M    LL    
Sbjct: 184 --DELITINIVDTHCFGIGSVNFEDFLYDLLAGKDISSD--LSSILEEGMNEVFLLTQVT 239

Query: 256 QKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              Q L  I    +     + ++I+       I  K++ L  +++     + +  L  + 
Sbjct: 240 SFIQQLFMISSYARTLGQPNPKEILGYIPPKNIWEKKSKLAINIK---PEVFQNMLEYLL 296

Query: 315 HRIHLARKKKYLEKNIIFQTILY 337
                 +  K   +N+  Q  L 
Sbjct: 297 DIELDFKTSKVENQNLYLQATLR 319


>gi|227874734|ref|ZP_03992888.1| DNA polymerase III, delta subunit [Mobiluncus mulieris ATCC 35243]
 gi|227844680|gb|EEJ54835.1| DNA polymerase III, delta subunit [Mobiluncus mulieris ATCC 35243]
          Length = 405

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220
            + +   A   L+  LG +         +L          +    V+  +         +
Sbjct: 224 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 283

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I +A + G +  A+      L   +    ++     K + L ++        +    ++ 
Sbjct: 284 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 342

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             +     M R  ++  L  W+   +   L  +       +      +  +   IL + +
Sbjct: 343 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 401

Query: 341 TACK 344
            A K
Sbjct: 402 CARK 405


>gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 514

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 93/243 (38%), Gaps = 34/243 (13%)

Query: 1   MATI----ESHKFIQKSTKNLFLSHFV--FIFYGSDKGLIFELINQFKKNISITYHDPFS 54
           MA +    +  + ++K  ++      V   +  G        L N    +        F 
Sbjct: 12  MAEVVGNTKIKEELKKWIEDYLQGKPVKPVLLVGPPGCGKTTLANALANDYG------FE 65

Query: 55  LVVLNALEIQ--KNISTFWNEIN-STSLFSKKKIILIENLST-----EKKVLDCLEEIII 106
           ++ LNA + +    I       + S SL  K+ +I+++ +       ++  +  + +II 
Sbjct: 66  IIELNASDKRNKDVIKQVVGSASVSKSLSGKRALIILDEVDGISGNSDRGGVSEILKIIK 125

Query: 107 KNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
                + II+ +N+I K +  +LR        ++ I     N   ++ ++    L    +
Sbjct: 126 T--AKNPIILTANDIYKPSLMSLRNAC----KIVKIGSVHTN--SIVPVLRRIALKEGFN 177

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +     +I+  + GGD  A+ N+L+ L+        +  + VK++        I + I  
Sbjct: 178 VDDSVLKIIAKHAGGDVRAAINDLESLAL----GNDLNLEEVKELPDRDVEKNIFDAIRI 233

Query: 225 TIQ 227
             +
Sbjct: 234 IFK 236


>gi|9758675|dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana]
          Length = 900

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 70/192 (36%), Gaps = 21/192 (10%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++D ++      +  I K+A +++ +   G    +   L++LS        I+   V++
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  +     N +      + + +   AL+          +   +I 
Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATVIT 625

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKYLE 327
           +    S++    + ++     ++ + +E     +   +++ L  +       R     L 
Sbjct: 626 DILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSNDKL- 678

Query: 328 KNIIFQTILYIA 339
              +   +L +A
Sbjct: 679 -TWLTAALLQLA 689


>gi|257470503|ref|ZP_05634593.1| hypothetical protein FulcA4_14249 [Fusobacterium ulcerans ATCC
           49185]
 gi|317064710|ref|ZP_07929195.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690386|gb|EFS27221.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 330

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 14/160 (8%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
               QK    F   +++ S+F+ K+++++      K +    + + + N+    III   
Sbjct: 35  FDASQKEDELFLQAVSTNSIFNPKELLILRRAEDIKNIESFFKSLKLFNLSQKEIIIVYE 94

Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171
           E      K  N L +K  +    +  I CY   + K  +   ++  L + +    K    
Sbjct: 95  EFLNDYGKIKNPLSKKALDSIGEIAQIICYRKENEKKAITFYLQHELNVSEYEAEK---- 150

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             +  +G D    +NE++K+ +Y L+  +     V  I+ 
Sbjct: 151 -FVEIIGDDFFKIKNEVEKVKNY-LDGDIFNLTKVMPILS 188


>gi|15887450|ref|NP_353131.1| DNA polymerase III subunits gamma and tau [Agrobacterium
           tumefaciens str. C58]
 gi|15154965|gb|AAK85916.1| DNA polymerase III, tau subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 624

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L          +  + 
Sbjct: 200 AADLVGLFTAIAGKEGFEAEPQALSMIARAAEG---SARDGLSLLDQAIAHGGGRVEAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+   +    +      +L+       L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALSEFNGQYEAGANPVVVLNDLADFTHLVTRMK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +       I++T       +   +    RIW
Sbjct: 317 YVPDAAEDPSLSEIERTR-GAEFAETIAVTALSRIW 351


>gi|289435979|ref|YP_003465851.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 578

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  +E  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|269976848|ref|ZP_06183823.1| DNA polymerase III, delta subunit [Mobiluncus mulieris 28-1]
 gi|269935045|gb|EEZ91604.1| DNA polymerase III, delta subunit [Mobiluncus mulieris 28-1]
          Length = 273

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220
            + +   A   L+  LG +         +L          +    V+  +         +
Sbjct: 92  GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 151

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I +A + G +  A+      L   +    ++     K + L ++        +    ++ 
Sbjct: 152 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 210

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             +     M R  ++  L  W+   +   L  +       +      +  +   IL + +
Sbjct: 211 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 269

Query: 341 TACK 344
            A K
Sbjct: 270 CARK 273


>gi|210616703|ref|ZP_03291191.1| hypothetical protein CLONEX_03412 [Clostridium nexile DSM 1787]
 gi|210149717|gb|EEA80726.1| hypothetical protein CLONEX_03412 [Clostridium nexile DSM 1787]
          Length = 298

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 27/252 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
             ++ YG++  LI +    FKK I      P     L   E  + I +F   +    L  
Sbjct: 2   PKWLVYGTEPFLIDK----FKKEILQNVEAP-EFNYLETNEFTEEIGSF---LCQLPLLG 53

Query: 82  KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
             K +LI +  T K     L E + K      + I +  + K   L K        +   
Sbjct: 54  NAK-VLIYHAETLKD-CSELVEFLSKRGKKAKVYIFAKTVDKRTKLYKQFSNDEIKIF-- 109

Query: 142 CYPDNKI--HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLED 198
              D      L   I + +      I+++A Q  L  +         E+      Y LE 
Sbjct: 110 ---DKVRMDVLQKTIIQHIKNAGCEITEDAYQQYLRQI----NYYSEEINLYDVLYSLER 162

Query: 199 ----ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHG 253
                 IT   VK  + +     +  +I   +  +           L  +   +  +L  
Sbjct: 163 LCTSQSITIDDVKKTVVNNESENVFSLIQLIMNQQYDEIYHQVALILQGQSNNAINVLSL 222

Query: 254 FLQKFQLLEKIH 265
            L+ ++L  KI 
Sbjct: 223 LLRNYRLAYKIR 234


>gi|325291540|ref|YP_004277404.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
 gi|325059393|gb|ADY63084.1| DNA polymerase III subunits gamma and tau [Agrobacterium sp. H13-3]
          Length = 625

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L          +  + 
Sbjct: 200 AADLVGLFTAIAGKEGFEAEPQALSMIARAAEG---SARDGLSLLDQAIAHGGGRVEAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    I+G +  A+   +    +      +L+       L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHIIKGDVAAALSEFNGQYEAGANPVVVLNDLADFTHLVTRMK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +       I++        +   +    RIW
Sbjct: 317 YVPDAAEDPSLSEIERVR-GAEFAETIAVTALSRIW 351


>gi|307319282|ref|ZP_07598711.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
           AK83]
 gi|306895118|gb|EFN25875.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium meliloti
           AK83]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +  + 
Sbjct: 202 ASDLVGLFSTILGKEGVPFDPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEIET 258

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    I+G +  A+        +      +L        L+ ++ 
Sbjct: 259 VRSMLGLADRARIVDLFEHVIKGDVAGALDEFAAQYEAGANPTVVLTDLADFTHLVTRLK 318

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +  N      I++T           +    R+W        L  I      AR    
Sbjct: 319 YVPDAINDQSLSEIERTR-GAEFAGSVAVTTLSRVWQM-----LLKGIPEAESSARPAGA 372

Query: 326 LEKNIIF 332
            E  +I 
Sbjct: 373 AEMVLIR 379


>gi|79530257|ref|NP_199384.2| ATP binding / DNA binding / DNA-directed DNA polymerase/
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332007905|gb|AED95288.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 966

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 70/192 (36%), Gaps = 21/192 (10%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++D ++      +  I K+A +++ +   G    +   L++LS        I+   V++
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  +     N +      + + +   AL+          +   +I 
Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATVIT 625

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKYLE 327
           +    S++    + ++     ++ + +E     +   +++ L  +       R     L 
Sbjct: 626 DILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSNDKL- 678

Query: 328 KNIIFQTILYIA 339
              +   +L +A
Sbjct: 679 -TWLTAALLQLA 689


>gi|78357484|ref|YP_388933.1| hypothetical protein Dde_2441 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219889|gb|ABB39238.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 324

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 10/155 (6%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           ++  L               +  A   + A L  D  A+RNEL+KL+     D +I+   
Sbjct: 136 DERSLQGFASAWAQKRGVRFAPGALPAICAALPADATAARNELEKLALAAGADGVISA-D 194

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +      L I   I A   G  +    +    + S   +  L+  FL   Q   ++ 
Sbjct: 195 TSALGDHAADLDIFGFIRAVQSGTQH--DKVWRKVMGSSSANDGLVFQFLGMLQREARMM 252

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
                                +   +    + LR 
Sbjct: 253 WQLLSGE-------SVRLPAAVLQSKTRTAQQLRY 280


>gi|227495916|ref|ZP_03926227.1| DNA polymerase III, delta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834532|gb|EEH66915.1| DNA polymerase III, delta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 342

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 99/324 (30%), Gaps = 26/324 (8%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTE 94
            +       +++        +V L A   +   S   + + S SLF + K++ +  L   
Sbjct: 37  ADRAVARVLSLARQKDPTTEVVRLEAATYE---SHQLDALVSPSLFGEPKLVHVPALEQM 93

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-------DNK 147
              L         +    ++++    ++ N   R   +K    LA S YP        + 
Sbjct: 94  SDALLADLLAYASHADPDVVVL----LRHNGGQR--GKKLLDALAASPYPVVTIEAVKSP 147

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
                L+   +    + I  EA   L+  LG D     + + +L      +  IT + V 
Sbjct: 148 KDKAALVTADVRAAGRRIETEAVGALVDALGSDLRELLSAVDQLV--ADVEGTITVEAVN 205

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
                        + +A   G +  A+      +A+      L+     K + L    + 
Sbjct: 206 TYYAGRFEATGFTVADAAAAGNVAKAVTALRHAIATGTEPVPLVAALAMKIRQL--ARVA 263

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE 327
                    + +        P + +  +  L  W+ + +   +  +       +      
Sbjct: 264 ASGGRQMSPRDLGMA-----PWQVDRARRELAGWSDDALAYAIQAVARADAEVKGASRDP 318

Query: 328 KNIIFQTILYIAQTACKNNNFYKR 351
            + + + +L I   A        R
Sbjct: 319 VHAVERAVLAICN-ARHGRIPRPR 341


>gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL
           S4-171]
          Length = 547

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  +E  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 148 TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 205

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 206 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 259


>gi|188528037|ref|YP_001910724.1| DNA polymerase III subunit delta [Helicobacter pylori Shi470]
 gi|188144277|gb|ACD48694.1| DNA polymerase III subunit delta [Helicobacter pylori Shi470]
          Length = 340

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 86/282 (30%), Gaps = 29/282 (10%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  +     +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSFFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC----LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              +++++ +    KK  +       + + +   N +II         +   K       
Sbjct: 73  GSSLVILKLDFVLHKKFKENDINLFLKALERPSHNRLII---GLYNSKSDTTKYKYTSEI 129

Query: 137 VLAI---SCYPDNKIHLMDLI----------EESLLIGQKSISKEAKQILLANLGGDRIA 183
           ++ +   S   D  IH    I          +E        IS      L      D   
Sbjct: 130 IVKLFQKSPLKDEAIHARFFIPKAWESLRFLQERANSLHLDISSHLLNALFETNNEDLSI 189

Query: 184 SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
           S N+L KL+     +  I  + ++++  +   + ++++I      K  + + + D+ L  
Sbjct: 190 SFNDLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKE 244

Query: 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                 +L G  + F  L       + S +   K +      
Sbjct: 245 GKKDADILRGLERYFYQLFLFFAHIKTSGLMDAKEVLGYAPP 286


>gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus
           Nankai-3]
 gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 474

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 28/230 (12%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI-QKNIST--FWNEINSTSLF 80
            +  G        L N    +        F L+ LNA +   K+I         +S S+ 
Sbjct: 41  VLLVGPPGCGKTTLTNALANDYG------FELIELNASDKRNKDIIRQIVGGASSSKSIT 94

Query: 81  SKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEK 133
            K+ +I+++ +       ++  +  + +II      + II+ +N+I K +  +LR +   
Sbjct: 95  GKRVLIVLDEVDGLSGNSDRGGVSEIIKIIKN--AKNPIILTANDIYKPSLMSLRTVC-- 150

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
             +++ I     N   ++ ++    L     +  +  +I+  + GGD  ++ N+L+ L+ 
Sbjct: 151 --NIVKIGSVHTN--SIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAINDLESLAM 206

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
                    E +V+++        I + I    +   Y+  + A   L  
Sbjct: 207 ----GNTFDEDNVRELPDRDTDKSIFDAIRIIFKTTHYDISLEATRDLKE 252


>gi|315453474|ref|YP_004073744.1| DNA polymerase III subunit delta [Helicobacter felis ATCC 49179]
 gi|315132526|emb|CBY83154.1| DNA polymerase III, delta subunit [Helicobacter felis ATCC 49179]
          Length = 325

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 35/294 (11%)

Query: 18  FLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST 77
             +  V + YG +   I   +++  K  +      +     +   +          ++  
Sbjct: 12  RATPRVALLYG-EPFYIDHYVSELLKRYAQAEQYRYYFGDYDFKAV-------LEVLSQD 63

Query: 78  SLFSKKKIILIE-NLSTEKKVLDCLEEIIIKNICNHIII-----------IKSNEIKKNN 125
           SLF +  ++L++ +     K +  L E +     + +II            +  +     
Sbjct: 64  SLFGEGSVVLLKLDKKPASKEITALLEAVATCPKSALIIGFYPLNKNTYTQECKQFSSQF 123

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
              K+ E    V      P      ++L+++     + ++  +A  +LL     D   + 
Sbjct: 124 KHPKLMETLVEVRFFPPKPSE---FLELLQKRAQALKLNVDSQALSLLLE--YNDIGMAY 178

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            EL KL+        I    V+  +     +  E +  A  + K  + + + +      +
Sbjct: 179 QELDKLALL---GRPINTADVQTHMHGGGAIEAERLFEALFERKGDS-LAILNRLQQEGL 234

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR 299
               L     + F  L    +  +       K I              +   LR
Sbjct: 235 DGVELARVVGRYFYQLALFAMHLKMHGGVQAKEILGFNPP------PAVSAQLR 282


>gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
 gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
          Length = 559

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 94/318 (29%), Gaps = 39/318 (12%)

Query: 38  INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92
             +  +    T  D FS  +  L+A       +I    +++       K K+ +I+ +  
Sbjct: 60  ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146
              +  +   + + +   + I I+               EK   +  I   C   +    
Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167

Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               +   + +       S   +A  ++     G    + +   +L ++      IT   
Sbjct: 168 TIEDIQGHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
             +++         +I+       I N ++  +  +      H  + G    +       
Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI--HLARKK 323
            +    N S   +I+     +    +    E  + W    + + +   ++    + + K 
Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYADINYKSSKN 334

Query: 324 KYLEKNIIFQTILYIAQT 341
             L   I    +  + Q 
Sbjct: 335 PRLTVEIALMQLASLTQE 352


>gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM]
          Length = 559

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 94/318 (29%), Gaps = 39/318 (12%)

Query: 38  INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92
             +  +    T  D FS  +  L+A       +I    +++       K K+ +I+ +  
Sbjct: 60  ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146
              +  +   + + +   + I I+               EK   +  I   C   +    
Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167

Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               +   + +       S   +A  ++     G    + +   +L ++      IT   
Sbjct: 168 TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
             +++         +I+       I N ++  +  +      H  + G    +       
Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI--HLARKK 323
            +    N S   +I+     +    +    E  + W    + + +   ++    + + K 
Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYADINYKSSKN 334

Query: 324 KYLEKNIIFQTILYIAQT 341
             L   I    +  + Q 
Sbjct: 335 PRLTVEIALMQLASLTQE 352


>gi|328951099|ref|YP_004368434.1| DNA polymerase III, delta subunit [Marinithermus hydrothermalis DSM
           14884]
 gi|328451423|gb|AEB12324.1| DNA polymerase III, delta subunit [Marinithermus hydrothermalis DSM
           14884]
          Length = 301

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 86/274 (31%), Gaps = 13/274 (4%)

Query: 58  LNALEIQKNISTFWNEINSTSLFS-KKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII 116
           L    +  + +    +  +  LF     ++ +   +  +     L  ++     + ++++
Sbjct: 25  LAPRLLPPDPARL-QQAAAGGLFGPSGALVDLREAA--EAEWKALRPVLEALPADALVLL 81

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
              + K      +  +    V             +  +E  L            Q L   
Sbjct: 82  L--DPKPPAARSRWYKARAEVRDHP--TPRWKDRVRWVENELKSRGIKAPSAVAQYLAG- 136

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           L GD  A   EL+KL         ++ + V+ ++     L   +++ A  +G+   A+  
Sbjct: 137 LEGDLEALAMELEKLELLSPP---LSVEKVRAVVALEAPLSAFDLVRAVTEGRFREALQH 193

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
               LA       +L     ++  L K   +   + +  EK        + P        
Sbjct: 194 LRTLLARGEEPLRILGALSWQYTTLAKAWALLAENPLLGEKEAAGLL-GVHPYAARQALL 252

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
             +  ++  +R+ L  +      A++     + +
Sbjct: 253 LAKRLDEARLRQALEALVVAERRAKEAGNPVRAL 286


>gi|149003384|ref|ZP_01828273.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758567|gb|EDK65565.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP14-BS69]
          Length = 364

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++     A       +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D  I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSAIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|183219439|ref|YP_001837435.1| hypothetical protein LEPBI_I0012 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909585|ref|YP_001961140.1| DNA-directed DNA polymerase subunit delta [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774261|gb|ABZ92562.1| DNA-directed DNA polymerase, delta subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777861|gb|ABZ96159.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 369

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 103/293 (35%), Gaps = 34/293 (11%)

Query: 28  GSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIIL 87
           G D      ++  +++ +  T  D F ++++ +   ++  +  + E+ +  +F  +K+I+
Sbjct: 33  GEDSYEFELIVEHYREILQKTLGD-FEVILIVSESGEQ--AKLFAELFTPDMFYPRKLII 89

Query: 88  IENLSTE-------------KKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAE 132
           I+N +               K       + I         +I     ++ K  +L  + +
Sbjct: 90  IKNATALFKPILDPKAAHEWKDFASGFRKNITSVSDEIFTLIHYDGKDVPK--SLIDLFQ 147

Query: 133 -KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
              +       YP++   +     E     Q      A +  +     +  A    ++KL
Sbjct: 148 GTLSYFKTKVLYPNDYPKIFK---EVCDQEQAHFEPNATEEFIHRTPANVGAYIKSVKKL 204

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
             Y  +    T + V  ++   + L    ++ + +Q +  +       F      +  +L
Sbjct: 205 KQYLHKSK-FTLEDVNSVLFSQNELNTNVLVESLVQKRKVDF---FKEFTKFGDQNSEIL 260

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKI----IQKTEKNIIPM--KRNILQESL 298
           +   +    L++I  IK   +    ++    + +  K       ++N ++  L
Sbjct: 261 NFLTRLTYKLDEIRKIKVIRSRHNGEVPIPIMDELLKTGSFSEARKNFVRRQL 313


>gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
 gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
          Length = 1241

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++  +++        I  EA +++ +   G    +   L +L        ++T   +++
Sbjct: 677 DIISRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLL---GQVVTLSTLQE 733

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  + G   + +      L S +   AL          L  +    
Sbjct: 734 LVGLLPDDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLAL-------MSQLATLITDM 786

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNIL--QESLRIWNKNLVRETLHKIDHRIHLAR 321
                     +  + K ++  ++     + +L   +   +R+ L  +       R
Sbjct: 787 ----------LAGSYKPVLTQRKRRFFHKITLSKEDLERLRQALKILSEAEKQVR 831


>gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 1097

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 65/194 (33%), Gaps = 21/194 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++      +  I K+A +++ +   G    +   L++LS        I+   V
Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL---GQRISVPLV 663

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL          L  +  
Sbjct: 664 QELVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL-------MSQLATVIT 716

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325
                +  F K   K +      ++ + +E     +   +R+ L  +       R     
Sbjct: 717 DILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTLSEAEKQLRVSNDK 768

Query: 326 LEKNIIFQTILYIA 339
           L    +   +L +A
Sbjct: 769 L--TWLTAALLQLA 780


>gi|258645987|ref|ZP_05733456.1| putative DNA polymerase III, delta subunit [Dialister invisus DSM
           15470]
 gi|260403358|gb|EEW96905.1| putative DNA polymerase III, delta subunit [Dialister invisus DSM
           15470]
          Length = 331

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 32/278 (11%)

Query: 25  IFYGSDK---GLIFELINQFKKNISITYHDPF--SLVVLNALEIQKNISTFWNEINSTSL 79
           I YG+D    GL  E I            D F   +  +  L+   N   + + +   SL
Sbjct: 12  ILYGNDSVTIGLRREEI----------IRDYFHGEIPEVTVLDSPGNYDLYRSYLEGQSL 61

Query: 80  FSKKKIILIENL---------STEKKVLDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRK 129
           F+ K  +++EN            E+   +    I+ +   + + I      + K     K
Sbjct: 62  FAVKTAVVMENPFFIKRPPKDKKEENEFNGFINILKELTPDILAIFTVDGALDKRTKASK 121

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG----DRIASR 185
                +   +  C          ++   L+   K +  EA+  +   +G      R   +
Sbjct: 122 TL--LSVCGSEECSLLAPREGASVMARMLMDCGKRVEPEARAYMEEVIGSWETISRPFLQ 179

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
            E  K+         I+++ ++  + +     I +  +A I       +   D       
Sbjct: 180 TECDKIVLMAGNRTGISKKLLEYALPEYMDQGIFKFTDALIAKNASAVMENTDHVFTDVS 239

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
            +   L     KF+ ++ +    + ++    +I +   
Sbjct: 240 ETIKNLGFISAKFRKIKILK-EMQRNHAPLPQIQKAAG 276


>gi|157363408|ref|YP_001470175.1| DNA polymerase III delta [Thermotoga lettingae TMO]
 gi|157314012|gb|ABV33111.1| DNA polymerase III delta [Thermotoga lettingae TMO]
          Length = 313

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 28/259 (10%)

Query: 69  TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
                ++   LFSK  +I + +    KKV    +E++ +   ++ + +    ++  +T R
Sbjct: 39  RIPELVSQMGLFSKDFLIDVVDFDEWKKVDQ--KELLQQLSSSNFLAV----LRTFSTSR 92

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K         ++   P  K   ++ I +         + E  +     +G D +    E 
Sbjct: 93  K---TDVIDFSLP-KPWEKEKWIEYISKRFEKSSLEYNYEGVEKFFDFVGADDLLIERET 148

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
           +KL+  C+ +  +T   V   +C+   + +EE   A     +          ++      
Sbjct: 149 EKLA--CIGEK-VTPDIVSLAVCNYSKIQMEEFCFAVST--LNRHAHYLLHDMSFYTEIV 203

Query: 249 ALLHGFLQKFQLLEKIHIIKECSN-------ISFEK-----IIQKTEK-NIIPMKRNILQ 295
           AL++   + F  L +I    E  +        +  +     +++  +        +    
Sbjct: 204 ALVNVLSKHFVDLYRILSAVEKRDSYSWMYIKNISQKLNIPVVKSAKFLGFSFKNQPSSI 263

Query: 296 ESLRIWNKNLVRETLHKID 314
             ++I++   +R  L ++ 
Sbjct: 264 NHVKIYSFEKLRIILRQLQ 282


>gi|306818031|ref|ZP_07451763.1| DNA-directed DNA polymerase III delta subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|304649192|gb|EFM46485.1| DNA-directed DNA polymerase III delta subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 406

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 3/184 (1%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDTHVLYIEE 220
            + +   A   L+  LG +         +L          +    V+  +         +
Sbjct: 225 GRKLEPAAANALVDALGEEFGELVAVTDQLLETAGNMDCPLRLDDVQVYLKGRVETTGFD 284

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I +A + G +  A+      L   +    ++     K + L ++        +    ++ 
Sbjct: 285 IADAAVVGDVSGALAKLRHALGIGVAPVVIVAAMAMKIRQLLQL-AAPPSRLVQETGLLA 343

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340
             +     M R  ++  L  W+   +   L  +       +      +  +   IL + +
Sbjct: 344 DVKPMNDWMARK-IRPLLGRWDDARLGRALRAVSVADAQVKGGSRDAEYALEAMILEVCR 402

Query: 341 TACK 344
            A K
Sbjct: 403 CARK 406


>gi|253582811|ref|ZP_04860031.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835387|gb|EES63928.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 330

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSN 119
               QK    F   +++ S+F+ K+++++      K +    + + + N+    III   
Sbjct: 35  FDASQKEDEVFLQTVSTNSIFNPKELLILRRAEDIKNIEAFFKTLKLFNLSQKEIIIIYE 94

Query: 120 EI-----KKNNTL-RKIAEKFTSVLAISCY--PDNKIHLMDLIEESLLIGQKSISKEAKQ 171
           E      K  N L +K  +    +  I CY   + K  +   ++  L I +    K    
Sbjct: 95  EFLNDYGKIKNPLSKKAMDSIGEIAQIICYRKENEKKAVTFYLQNELNISEYEAEK---- 150

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             +  +G D    +NE++K+ +Y L+        V  ++ 
Sbjct: 151 -FVEIIGDDFFKIKNEVEKVKNY-LDGDTFNLTKVMPVLS 188


>gi|222823951|ref|YP_002575525.1| hypothetical protein Cla_0950 [Campylobacter lari RM2100]
 gi|222539173|gb|ACM64274.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 321

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 33/270 (12%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ YG+D   I       K   S      F     +  +        ++ ++S SLFS++
Sbjct: 19  FLLYGADNFQIELYTKFIKDKYSFDESLRFYFEEYDFKQA-------YDYLSSASLFSER 71

Query: 84  KIILIENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS 141
           K++ I+  + +K     L++++   +N  ++  +++  +        K +E         
Sbjct: 72  KLLEIK--TQKKIPSKELKQLLQLCQNSQDNYFLLEIYDESS-----KQSEAEKIFANNF 124

Query: 142 C--Y----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           C  Y        + L+ L  + L     +I++ A   L  N   +   + NEL K S   
Sbjct: 125 CRFYKVNSAKEGMELLALKAKEL---NINITQNALYALFYNFNENLYLAANELNKFS--- 178

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
              + I E+ +++       +  E   +  +Q +    +      +       AL++   
Sbjct: 179 --GLNIDEKIIQEHCYSLSTISFESFFDKLMQKQ---DLRNELESILENYNEIALINALY 233

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
             F  L KI +  +       K I      
Sbjct: 234 ANFSRLFKIALHVKIYGNLDLKEILGYVPP 263


>gi|323142859|ref|ZP_08077571.1| putative DNA polymerase III, delta subunit [Succinatimonas hippei
           YIT 12066]
 gi|322417401|gb|EFY08023.1| putative DNA polymerase III, delta subunit [Succinatimonas hippei
           YIT 12066]
          Length = 367

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 83/250 (33%), Gaps = 31/250 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI---QKNISTFWNEINSTS 78
            VFI    D  L  +  ++   +    + D   L+   +      Q N++   NE+    
Sbjct: 6   PVFILSSDDPLLKNDRSSEIYHSYKEKHPDSEYLLFTYSDFASSGQSNLAVLENELIDGG 65

Query: 79  LFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIII----------------KSN 119
           LF+  K+I I     +K   D    L + I K   +  III                 + 
Sbjct: 66  LFTSNKVIKIYLKDIDKTAADVLMLLAKYISKQRDDLQIIIDLPRIAASFNKVSAKPFAE 125

Query: 120 EIKK--NNTLR-----KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQI 172
           E KK     LR        +   +VL I  YP +   +   I          I  +A   
Sbjct: 126 ESKKNRKADLRVKDAISYLKNQNAVLEIM-YPPSLQEMPGWISSRARRLGLYIDPDAAVF 184

Query: 173 LLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232
           L +   G+  A    LQ +     +   IT + +             E+ +A + G+   
Sbjct: 185 LSSAYEGNLTAIDQCLQ-IVKMTAKTEKITIKDIFTYFSKDSRFSGFELTDAILDGQGLR 243

Query: 233 AIMLADFFLA 242
           A+ + +   +
Sbjct: 244 ALNILNSLCS 253


>gi|72162480|ref|YP_290137.1| recombination factor protein RarA [Thermobifida fusca YX]
 gi|71916212|gb|AAZ56114.1| Recombination protein MgsA [Thermobifida fusca YX]
          Length = 441

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 145 DNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           D+   ++   L +E  L G+ ++++EA   L+   GGD   S   L+  +    +   IT
Sbjct: 173 DDIRTVVRRALTDERGLAGRYTLTEEALHHLVRLAGGDARRSLTYLEAAALVAGDRTEIT 232

Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
              V+              D H   +   I +     +  A+      + +      +  
Sbjct: 233 VADVERAADRTAVRYDRSGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDPRFIAR 292

Query: 253 GFLQK 257
             +  
Sbjct: 293 RLVVH 297


>gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
           KC583]
 gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella
           bacilliformis KC583]
          Length = 634

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/202 (9%), Positives = 66/202 (32%), Gaps = 9/202 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+  + +     +  + ++A  I+     G    + +   +       +  I    
Sbjct: 187 ESSALVAHLHKIAQHEKVEVQEQALSIIARAAEGSVRDALSIFDQAI--AHSNGKINATA 244

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++ +  ++G I +A+        +     ++L        L+ ++ 
Sbjct: 245 VRTMLGLADQARIIDLFDYVMKGDIVSALHELRSQYDAGADPFSVLAELANFNHLVTRLR 304

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319
           +I E +        ++   ++   ++  ++   R W         + +    +    + L
Sbjct: 305 LIPETTEDLSLTEDERLR-SLDFSQKLSIRVLSRTWQMLLKGLQEINQAARPLQAAEMLL 363

Query: 320 ARKKKYLEKNIIFQTILYIAQT 341
            R     +   + + +  + Q 
Sbjct: 364 IRLTHATDLPTLDEALTQLTQN 385


>gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
 gi|150415659|sp|A2BL93|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
          Length = 484

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 79/202 (39%), Gaps = 28/202 (13%)

Query: 21  HFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
               +FYG        L+    N++   +       F          + +I        +
Sbjct: 44  RKAALFYGPAGVGKTSLVEAAANEYGLELIEMNASDFRR--------KSDIERIAKIAAT 95

Query: 77  T-SLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
             SLF +K+ I++ +       + ++  LD + E+I  NI  H I++ +N+   +  L+ 
Sbjct: 96  QFSLFGRKRKIILLDEVDGISGTADRGGLDAILELI--NITKHPIVMTAND-PWDQKLKP 152

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + +     L +  Y  ++ +++ +++            EA +++     GD  ++ N+LQ
Sbjct: 153 LRDAS---LMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQ 209

Query: 190 KLSSYCLEDILITEQHVKDIIC 211
            +        ++    V+ ++ 
Sbjct: 210 AI---AEGYGVVRVDLVRALLA 228


>gi|218295670|ref|ZP_03496466.1| DNA polymerase III, delta subunit [Thermus aquaticus Y51MC23]
 gi|218243829|gb|EED10356.1| DNA polymerase III, delta subunit [Thermus aquaticus Y51MC23]
          Length = 299

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 94/275 (34%), Gaps = 21/275 (7%)

Query: 73  EINSTSLFSKKKIIL-IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKI 130
           E  +  LF     +L +  +S  +     L+ I+        +++    +    +  R  
Sbjct: 38  EALAPGLFGGGGAMLDLREVSEGEW--KALKPILEGVPEGVPVLL----LDPRPSPSRAA 91

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
             +                L+  +E         +     Q L A L  D  A   EL+K
Sbjct: 92  FYRSRERRDFP--TPKGKDLVRHLENRARRLGLRLPSGVAQYLAA-LEADLEALERELEK 148

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L+   L    +T + V+ ++     +   +++ A ++     A+               L
Sbjct: 149 LA---LLPPPLTLEKVEMVVALKPPITGFDLVRAVLEKNPKEALARLKRLKEEGEEPLKL 205

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           L  F  +F LL + + + + +    E  + +   +     +  L+E+ R  ++  +R+ L
Sbjct: 206 LGAFAWQFGLLSRAYFLLQENPRPKEADLARLGAH-PYAAKKALEEA-RRLSEEALRQAL 263

Query: 311 HKIDHRIHLAR--KKKYLEKNIIFQTILYIAQTAC 343
             +      A+  K  +L    +   +L +A    
Sbjct: 264 TTLIEAERRAKGGKDPWLA---LEMAVLSLAVDQR 295


>gi|86739966|ref|YP_480366.1| DNA polymerase III subunit delta [Frankia sp. CcI3]
 gi|86566828|gb|ABD10637.1| DNA polymerase III, delta subunit [Frankia sp. CcI3]
          Length = 334

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 87/244 (35%), Gaps = 7/244 (2%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            + +  G +  L+     +   + +        +V   A E+ +  +   + + +TS+F 
Sbjct: 12  PLVLVTGDEDLLVG-RAVRGVLDAARARDPDVEIVDRPAGELSE--ADLID-LGATSMFG 67

Query: 82  KKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
             +++++       + + D L E I + + + ++++  + + KN  L  + +   + +  
Sbjct: 68  GGRVMVVRGAQDLAEDLRDALLEYIARPLDDVVLVVVHSGVVKNRKLADVLKTAGARVVP 127

Query: 141 SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
           +          D +   +      +S  A + LL  +GGD         +L      D L
Sbjct: 128 AAKITKPRERHDFVVAEVRHLGGRVSDGAVRALLDAVGGDLRELAAVCDQLV--ADTDGL 185

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I E  V              + +A I G +  A+ L    L     +  +        + 
Sbjct: 186 IDEAAVARFHRGRAEASGFAVADAIIGGDLPQALTLLRQSLEGGTAAVLVSSAVAGGLRD 245

Query: 261 LEKI 264
           L ++
Sbjct: 246 LARV 249


>gi|291279191|ref|YP_003496026.1| hypothetical protein DEFDS_0792 [Deferribacter desulfuricans SSM1]
 gi|290753893|dbj|BAI80270.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 292

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTS 78
            +    +  GSD   I + +++          D  ++ +    E   NI    + I++ S
Sbjct: 2   TTKKKILIAGSDSF-ISDRLDEL-------IPDDENIEIKRYNEENFNIEEVVDFISTIS 53

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           LF + K ++++N+   K++ D L     +      I+  S      N L K+ +    ++
Sbjct: 54  LFYEDKYLIVKNIHKIKELEDSLNYFSGE--SEAHIVFTSEN----NNLIKLFKDHFEII 107

Query: 139 --AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                 Y D     +  + E        I     + +    G +    + E +K+S +  
Sbjct: 108 KETKHSYKD----FVVQVMEIFKSKGVDIEFNEAKEIYELCGRNIDLIKQEAEKISIFFY 163

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
              + +   +  +I  ++V  + + +++         +   +  +++      + +   +
Sbjct: 164 NQKIESFDEILKLISSSNVNLVFKFLDSFYVRDKRKTLEYLNEMISAHENLMMVFYMLAK 223

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
           +   +    I  E  +    KI Q             ++ ++  W  + + + +  +
Sbjct: 224 RANEMFYYKINPELVSGHAYKISQ-------------IKSAVSKWKLDELSQLIENL 267


>gi|313631594|gb|EFR98854.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL
           N1-067]
          Length = 456

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  +E  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 57  TTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 114

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 115 ALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 168


>gi|168492914|ref|ZP_02717057.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231559|ref|YP_002510711.1| DNA polymerase III delta subunit [Streptococcus pneumoniae ATCC
           700669]
 gi|225858573|ref|YP_002740083.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 70585]
 gi|183576916|gb|EDT97444.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674019|emb|CAR68532.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae
           ATCC 700669]
 gi|225722068|gb|ACO17922.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae 70585]
          Length = 345

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++     A       +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|149921244|ref|ZP_01909700.1| DNA polymerase III, delta subunit [Plesiocystis pacifica SIR-1]
 gi|149817904|gb|EDM77366.1| DNA polymerase III, delta subunit [Plesiocystis pacifica SIR-1]
          Length = 363

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 31/280 (11%)

Query: 22  FVFIFYGSDKGLIFE-----LINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
            V++ +G D   +            +     T  + F+    +A  +        N    
Sbjct: 15  PVYLLWGEDSAAVKAVVDAVREAVLRPGGVSTGMEAFNHERFDAPYVLAAAEVL-NACGQ 73

Query: 77  TSLFSKKKIILIENL--------------------STEKKVLDCLEEIIIKNICNHIIII 116
             + + ++++ + N                     S     +  L E         ++II
Sbjct: 74  VPMMADRRLVELSNPEDFGKHKRAEELDGEVKALESKRDDAIGALIEYFDDPNPTTVLII 133

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
            S  I   + L K A+K   V+     P ++    D + +     Q  +++   Q L+A 
Sbjct: 134 TSAGINGTSKLVKAAKKAKGVVERKLAPASEQEAADELLDEAQRRQLPLTRGGAQALVAA 193

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           +G         L++  ++      +  +HV+ ++  T    + ++ +A  +G    A+ +
Sbjct: 194 VGTSLADLVPALERAVAFAEGAS-VEREHVEAVVATTREANVFDLTDAVGRGDHVRALEI 252

Query: 237 ADFFL--ASKMPSHA--LLHGFLQKFQLLEKIHIIKECSN 272
                  A K P  A  LL     + + L  +   ++ + 
Sbjct: 253 LAHMFRTAEKDPGQAMRLLGMLTWQMRRLCTVAFARDPAR 292


>gi|116753783|ref|YP_842901.1| replication factor C large subunit [Methanosaeta thermophila PT]
 gi|121693813|sp|A0B6D7|RFCL_METTP RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|116665234|gb|ABK14261.1| replication factor C large subunit [Methanosaeta thermophila PT]
          Length = 467

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 28/230 (12%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTSLFS 81
            I YG   G + +          + +      + LNA +    + I +     +  S FS
Sbjct: 43  LILYGP-PG-VGKTSAALALASEMDWD----YIELNASDQRTAEIIKSIAGPASQVSTFS 96

Query: 82  KKK-IILIENLST-----EKKVLDCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKF 134
            ++ +++++         ++     +  +I       I+I  +   I+K   LR      
Sbjct: 97  GRRRLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIEK--PLR------ 148

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
            +   +         +  L+ E           EA   + A  GGD    R+ +  L + 
Sbjct: 149 DACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVMHIAAMSGGD---LRSAINDLEAA 205

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLADFFLAS 243
                 +  + V     D     I  ++++  +G    +A+        S
Sbjct: 206 ARGLKHLRLEDVATSERDVKA-SIFRVLDSIFKGEDSRSALEATYQLDES 254


>gi|257126560|ref|YP_003164674.1| DNA polymerase III delta [Leptotrichia buccalis C-1013-b]
 gi|257050499|gb|ACV39683.1| DNA polymerase III delta [Leptotrichia buccalis C-1013-b]
          Length = 327

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 79/184 (42%), Gaps = 12/184 (6%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--K 117
            +++++N   F  +IN  S+F+ +++++++     K + + L+ I    I N  III   
Sbjct: 35  DVDLKEN-EKFLEKININSMFANQELVVLKRAEKLKNIEEILKYIANLEIVNKEIIIDYD 93

Query: 118 SNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
             + K    L+K+ +   K   +       +++  +   +   L     +I+     +LL
Sbjct: 94  KEDGKFGVKLKKLLDEFSKNKQMKVFLFQKESEKEIKAYVVNEL-----NINARDVSVLL 148

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
             +G +    RNE++K+  + L+      + +K+I+       I E+    +     + +
Sbjct: 149 EMIGRNPFKVRNEVEKIKVF-LDGEKFDIEKIKNIVSIEKEYQIYEMTRNILLNNPADVM 207

Query: 235 MLAD 238
              +
Sbjct: 208 RYLE 211


>gi|221632853|ref|YP_002522075.1| DNA polymerase III subunit delta superfamily [Thermomicrobium
           roseum DSM 5159]
 gi|221156946|gb|ACM06073.1| DNA polymerase III, delta subunit superfamily [Thermomicrobium
           roseum DSM 5159]
          Length = 344

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 89/305 (29%), Gaps = 35/305 (11%)

Query: 67  ISTFWNEINSTSLFSKKKIIL----IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
           I T      +   F  +++++    + +   ++++   L   +        +I     + 
Sbjct: 40  IPTIMAAARTPGFFLDQRLVITECLLADHIRQQQLDPDLVHALATLPSGCHVISLEPPLP 99

Query: 123 KNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL------- 174
               L ++       +  + C       L++ + E        I   A + L+       
Sbjct: 100 P-AVLDQLRAALGDAVTFVDCNVPIGEKLIEWVTERARSYGVEIEPAAAEELVIAIDPTA 158

Query: 175 -------------ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
                           G D      EL KL++    + +I    V++++          +
Sbjct: 159 LQRRREHAGSQSDQQAGLDLARVDQELAKLATAVYPEKMIRVAVVRELVAADDAPLEWAL 218

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQK 281
           I+A  +G     +   +  L +      LL      F+ L    I+   S  +       
Sbjct: 219 IDALNRGDATAIVRELERALDTNAVPDVLLAQLASHFEALFAAQILPHLSPDAVAAATGL 278

Query: 282 TEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341
           + + I  ++R +        N   +   L  ID  +            I  +  L +   
Sbjct: 279 SARRIAQVRRILSTR--SSMNAGAMLAALRAIDASLKR-------GIVIDSEAALAVTLL 329

Query: 342 ACKNN 346
           A    
Sbjct: 330 AGAQR 334


>gi|169832751|ref|YP_001694225.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995253|gb|ACA35865.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 345

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++     A       +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|15900659|ref|NP_345263.1| DNA polymerase III subunit delta [Streptococcus pneumoniae TIGR4]
 gi|111658345|ref|ZP_01409033.1| hypothetical protein SpneT_02000485 [Streptococcus pneumoniae
           TIGR4]
 gi|14972240|gb|AAK74903.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae TIGR4]
          Length = 345

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++     A       +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      + +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|320159544|ref|YP_004172768.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
           UNI-1]
 gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
           UNI-1]
          Length = 553

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 64/193 (33%), Gaps = 14/193 (7%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              + L + + +   + I I+ + E+ K   T+    ++                +  L+
Sbjct: 134 AAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQRHEFRRV------PVQQIAALL 187

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
            +       ++ ++A  ++     G    + + L +LSS       +T + V+ ++    
Sbjct: 188 RQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSS---TGERVTLEMVQSVLGTAA 244

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI----IKEC 270
              I  +++A +       + +    L             +   + L  + +    + + 
Sbjct: 245 GEPIRLLVDAILARNAAQGLQIIQQTLDGGADPRQFARQVVDYLRGLLLVRMNNAALVDA 304

Query: 271 SNISFEKIIQKTE 283
           +  +  ++  +  
Sbjct: 305 TAETRAQMAAQAG 317


>gi|223039643|ref|ZP_03609929.1| DNA polymerase III, delta subunit superfamily [Campylobacter rectus
           RM3267]
 gi|222879026|gb|EEF14121.1| DNA polymerase III, delta subunit superfamily [Campylobacter rectus
           RM3267]
          Length = 328

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 39/337 (11%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           F+ YG+D       I  F K I   + D F ++     E   + +     +   SLF   
Sbjct: 19  FLLYGAD----EYQIELFTKEILAKFKD-FEILSFYYDEYDFDAARAH--LCEPSLFGDS 71

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL----- 138
            ++ ++  S +K     L+ +I         + +            + E     +     
Sbjct: 72  PLLHVK--SDKKIPAKELKILIEGCKNGGAFVFE------------LFESDAKAVFDTQK 117

Query: 139 AISCY------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           A          P +    ++L+         +I++ A   L      +   + +EL KL+
Sbjct: 118 AFGVNFARFFKPGSPEEAVNLLGRQAAKMSLNITRNALFELYRIHNENLYLAASELNKLA 177

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           S    +  I E  V+ ++     +  ++  +  I  K   A                 ++
Sbjct: 178 SL---NEPINENIVRSLVFSLSSVSFDDFFDKFIALKDIRAD-FFSCADDGNFNEILFIN 233

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312
              + F  L K+H   + +     K          P   N L+      N    +E    
Sbjct: 234 SLYRAFFRLFKLHAGIKITGKFDIKETLGYTPP--PNVANELKRQCLAVNLKAYKEIFTA 291

Query: 313 IDHRIHLARKKKYLE-KNIIFQTILYIAQTACKNNNF 348
           ++      +    L+ K  +   +L +     KN+ +
Sbjct: 292 LNLAEFELKTNSALDKKTFLLSCVLGLQNLIGKNSKY 328


>gi|223587782|emb|CAX37001.1| DNA polymerase III, delta subunit protein [Citrobacter sp.
           JEK-2009]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 66  NISTFWNEINSTSLFSKKK--IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +    ++   + SLF+ ++  ++ +        + + L  ++     + ++I++ N++ K
Sbjct: 55  DWGEIFSLCQAMSLFASRQSLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTK 114

Query: 124 NNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
                        + + +SC    +  L   +     +    +   A Q+L     G+ +
Sbjct: 115 AQENAAWYTGLANNAVQVSCQTPEQAQLPRWVAARAKLNDLQLDDAANQLLCYCYEGNLL 174

Query: 183 ASRNELQKLSS 193
           A    L++L+ 
Sbjct: 175 ALAQALERLAL 185


>gi|256841270|ref|ZP_05546777.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
 gi|256737113|gb|EEU50440.1| DNA polymerase III subunit gamma/tau [Parabacteroides sp. D13]
          Length = 601

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 105 YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 164

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 165 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 212

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 213 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 270

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 271 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 313


>gi|290559903|gb|EFD93225.1| hypothetical protein BJBARM5_0018 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 325

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 32/238 (13%)

Query: 39  NQFKKNISITYHDPFSLVVLNA--LEIQKNISTFWNE----INSTSLF-SKKKIILIENL 91
           N   + ++ + +  F ++ L     + Q   S   N       S SLF S +KII IE++
Sbjct: 46  NFLAEALANSINASFEVINLYEFSDDSQSVSSAILNNIKSSAVSKSLFQSNRKIIYIEDI 105

Query: 92  STEKKVLDCLEEIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH 149
                V   +   I     + III   +S EI K +  +K     +    +  Y  N   
Sbjct: 106 EKILSVNPSIIPSITSLAVDSIIIFESESGEIFK-SKYKKYI---SGCEVVRFYKLNNR- 160

Query: 150 LMDLIEESLLI-GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
           ++ L    L I  +  I      I++    G+  +   ++  LS       + + +    
Sbjct: 161 VVRLFATKLAIYNRLQIDDRTLDIIVNGSKGNLASVITDMNTLSI-TGSKQIDSFRD--- 216

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM--------PSHALLHGFLQKF 258
                    I + INA   GK+ N  +     + +K             L    L  F
Sbjct: 217 -----SSDSIFDKINAVFSGKVENVDIYFSSDMEAKNFEIWLADKAPQVLKKEALYHF 269


>gi|194398594|ref|YP_002037411.1| DNA polymerase III subunit delta [Streptococcus pneumoniae G54]
 gi|194358261|gb|ACF56709.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae G54]
          Length = 345

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + ++I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNVIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL
           F2-515]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 170 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 227

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 228 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 281


>gi|190571334|ref|YP_001975692.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018730|ref|ZP_03334538.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357606|emb|CAQ55047.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995681|gb|EEB56321.1| DNA polymerase III, gamma and tau subunits [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 527

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 20/203 (9%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL-- 153
              + L + + +   +   I+ + EIKK              +   C   +  ++     
Sbjct: 131 NAFNALLKTLEEPPSSVKFILATTEIKK----------IPITVIARCQRFDLHNIPSAKI 180

Query: 154 ---IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
              + +        I KEA +++  +       +   + +   Y  +D  I+ Q V DI+
Sbjct: 181 MERLNDIAQKENYFIEKEASELIAHHCSNSMRNALFLMNQALLYS-KDGTISTQSVTDIL 239

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
                  I +++ A +   +  A+++ D  +        +    LQ  QL+ +  I KE 
Sbjct: 240 GLVDRNVIFDLLEAVLDSDLQKALLVFDNVVK-TANPLNIFEDLLQTIQLICRFLITKEI 298

Query: 271 SN---ISFEKIIQKTEKNIIPMK 290
                 S  K +   +  I   +
Sbjct: 299 DTEYEKSRVKDLSAKKSLIFFSR 321


>gi|57242338|ref|ZP_00370277.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017018|gb|EAL53800.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 320

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 108/324 (33%), Gaps = 30/324 (9%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIST 69
           +QK+ +N    +F F+ YG D        N  K+   +  +        +        + 
Sbjct: 6   LQKALENKNFPNF-FLLYGGDNFQTELYGNFIKQKYGVEENLKLYFEEYDF-------AR 57

Query: 70  FWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
             + +   SLFS KK++ I+ L     K L  L  +   N  N  ++   +E  K + L 
Sbjct: 58  ASDFLALGSLFSSKKLLEIKCLKKPSGKDLKALISLCKNNADNFFLLELYDENTKQSELE 117

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           KI E   +           I L+ +  + L      I+  A   L  +   +   + +EL
Sbjct: 118 KIFENHFARFFKISNSKEGIELLAMKAKEL---NVEITHNALITLFVSFDENLYLAASEL 174

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            K +     ++ + E  +K       ++  ++  +  +  K  N     +  L       
Sbjct: 175 NKFA-----NLKVDENIIKQYCYSLALVGFDDFFDKLL--KTRNIKEELEKILE-NFNEI 226

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLR----IWNKN 304
           AL++     F  L KI I  +       K +              + ++L       N  
Sbjct: 227 ALINSLSSAFYRLFKITIYAKIYGKIDFKDLLGYTPP------PQVGQALSGQAFKLNLK 280

Query: 305 LVRETLHKIDHRIHLARKKKYLEK 328
             +   + +    +  +    L K
Sbjct: 281 QYKAIFNLLLKSEYEIKTNSKLSK 304


>gi|269120540|ref|YP_003308717.1| DNA polymerase III subunit delta [Sebaldella termitidis ATCC 33386]
 gi|268614418|gb|ACZ08786.1| DNA polymerase III delta [Sebaldella termitidis ATCC 33386]
          Length = 321

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 16/192 (8%)

Query: 55  LVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHII 114
           +         K    F+ ++N  S+F  K+I++++       + + L  +    + +  +
Sbjct: 29  IQEFAFDVALKEDDKFFEKLNFNSIFGGKEILVLKRAEKLGNIEEVLTLVSNVEMDSKYV 88

Query: 115 II----KSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
           II    + +  KKN+ L  + +   K T    I    +++ +L + ++E+L    K    
Sbjct: 89  IIDFHTEGS--KKNDKLFTLLDEIGKKTETKVIKT-EEDEKNLSNYVKENLKTDTKE--- 142

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
              Q LL+ +G +    +NE++K+ S+ L D     + +K +I      +I E +  TI+
Sbjct: 143 --TQRLLSLIGENPFKVKNEVEKIKSF-LGDEPYDFEKIKSMISVQKEYFIYECVEKTIK 199

Query: 228 GKIYNAIMLADF 239
           G+I+  +     
Sbjct: 200 GEIFEVMEYLKK 211


>gi|320533796|ref|ZP_08034391.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133987|gb|EFW26340.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 189

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 10/179 (5%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111
            +  L A   +       + + S SLF + +++ +  L   T+  + D +  +   +   
Sbjct: 16  EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVSAADPEV 72

Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170
            +I+  +   +    L  I  K +    I C    +      L+   +    +SI+ EA 
Sbjct: 73  SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAIKSAKDKSSLVVADVRRAGRSIAPEAV 130

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
             L+  LG D     + + +L         I+  HV+             +  A   G 
Sbjct: 131 GALVDALGSDLRELCSAVDQLL--ADTQGTISVDHVRTYYAGRIEATGFTVAGAAAAGN 187


>gi|150008698|ref|YP_001303441.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
           ATCC 8503]
 gi|149937122|gb|ABR43819.1| DNA polymerase III subunit gamma/tau [Parabacteroides distasonis
           ATCC 8503]
          Length = 586

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 90  YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298


>gi|170742371|ref|YP_001771026.1| DNA polymerase III subunits gamma and tau [Methylobacterium sp.
           4-46]
 gi|168196645|gb|ACA18592.1| DNA polymerase III, subunits gamma and tau [Methylobacterium sp.
           4-46]
          Length = 605

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 4/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+  +         ++  EA   +     G    S + L +          +T + 
Sbjct: 211 EAGTLVAHLHRICDAEGVAVEPEALAAIARAAEGSVRDSLSLLDQAI--AHGAGRVTAET 268

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G    A         +      +L        L+ ++ 
Sbjct: 269 VRDMLGLADRARIIDLFEAAMRGDAPAAFAELHGQYEAGADPAVVLQDLAGFTHLVTRLK 328

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           +  E +         +  +      R  ++   R W   ++   + ++   
Sbjct: 329 VAPETARADTALSEAERGRGSDFADRLSVRALSRAW--QILLRAIPEVQAA 377


>gi|71065142|ref|YP_263869.1| DNA polymerase III, delta subunit [Psychrobacter arcticus 273-4]
 gi|71038127|gb|AAZ18435.1| DNA polymerase III, delta subunit [Psychrobacter arcticus 273-4]
          Length = 358

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 114/344 (33%), Gaps = 47/344 (13%)

Query: 7   HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
             FIQ   K    S  V   ++ +G +  L   LI+  + +        +++  +  + I
Sbjct: 3   DTFIQAYPKLRQSSIAVAGLWLAHGDEPLLSQWLIDALRPHWRAQN---YAIKRIELISI 59

Query: 64  QKNISTFWNEINSTSLFSK-KKIILIENLSTEKKVLDCLEEIIIKNICNHI---IIIKSN 119
           +        E+ S SLF     +I+  N   +K V+  LE              ++  + 
Sbjct: 60  KSWQEVLS-ELGSQSLFDDASALIVTGNHKPDKAVITELERFAQDAQTGAHSHSLLWLTP 118

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           +  K     K           I C   N+     L++         +S+EA Q+L+++  
Sbjct: 119 KQDKRAQSSKWFAPFAQYGHLIDCNLYNEQQRQQLLQIQAQQFGLKLSQEAWQLLMSHTE 178

Query: 179 GDRIASRNELQKLS------SYCLEDILI---------------TEQHVKDIICDTHVLY 217
              +++   L +LS           D  I                   ++  +       
Sbjct: 179 HHLLSAYQTLWRLSYLFAPQLMANNDAAIQENGNSSAHLLQVALDINDLQAALVSDAQFS 238

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
           + ++ +A + G I     +     A+  P+  +L    +  + + ++    +  +     
Sbjct: 239 VFDLSDAMLAGNIAQVAKIIFQLKATDEPTTLVLWAISKDMRQVMQL---MDGQDPQAL- 294

Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVR---ETLHKIDHRIH 318
                   I   K+ + Q++ R  +K  V      L++ D  I 
Sbjct: 295 -------GIWRSKQGLYQQACRRQSKAQVAAWPALLYRCDQAIK 331


>gi|262383581|ref|ZP_06076717.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
 gi|262294479|gb|EEY82411.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_33B]
          Length = 586

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 90  YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 256 DAVLSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298


>gi|255014495|ref|ZP_05286621.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_7]
          Length = 586

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 90  YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298


>gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 575

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 108/324 (33%), Gaps = 37/324 (11%)

Query: 36  ELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS- 92
           E  NQ +  +S   +   ++  ++A       +I     ++       + ++ +I+ +  
Sbjct: 73  EACNQCESCVSFNENRSLNIFEMDAASNNSVDDIRELVKQVMVPPQIGRYRVYIIDEVHM 132

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKI 148
                 +   + + +     I I+               EK   +  I      Y  N+I
Sbjct: 133 LSTAAFNAFLKTLEEPPEYAIFIL------------ATTEKHKILPTIISRCQVYDFNRI 180

Query: 149 HLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
            + D ++         +  +  EA +++     G    + +   ++ SYC     IT + 
Sbjct: 181 QINDTVDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYCGNK--ITYKE 238

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V DI+      Y  ++++  ++G +  ++M+ D  +       + + G    F+ L    
Sbjct: 239 VIDILNVLDYEYYLQMVDCFVRGDVVGSLMILDKIINKGFDVQSFVSGLSSHFRDLLVAQ 298

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH--LARKK 323
             +  S +     I           +    E  +I   + + + L             K 
Sbjct: 299 NERSISLLQVSDSI-----------KKRYAEQAKICPPDFLYKALELSVQCELNYKTSKN 347

Query: 324 KYLEKNIIFQTILYIAQTACKNNN 347
           K L   ++   I  I  T  K NN
Sbjct: 348 KRLLVELMLIKICQIISTPEKKNN 371


>gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
           220]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
           FSL J1-175]
 gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           FSL N1-017]
 gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           FSL N1-017]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e]
 gi|224499379|ref|ZP_03667728.1| hypothetical protein LmonF1_06652 [Listeria monocytogenes Finland
           1988]
 gi|224502886|ref|ZP_03671193.1| hypothetical protein LmonFR_10254 [Listeria monocytogenes FSL
           R2-561]
 gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165]
 gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28]
 gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
 gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
 gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e]
 gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165]
 gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
 gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262]
 gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL
           J2-003]
          Length = 446

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|301311507|ref|ZP_07217434.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
 gi|300830593|gb|EFK61236.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 20_3]
          Length = 586

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 90  YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298


>gi|254830860|ref|ZP_05235515.1| hypothetical protein Lmon1_05849 [Listeria monocytogenes 10403S]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
 gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
 gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           L99]
          Length = 580

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|78187181|ref|YP_375224.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
 gi|78167083|gb|ABB24181.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
          Length = 396

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 69/190 (36%), Gaps = 10/190 (5%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              +   + + +   + I I  + E+ K   T+    ++F         P+ +  L  + 
Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRI--PLPEIQQQLQGIC 199

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVKDIIC 211
           E         +  +A Q++     G    +++ L ++ ++      D  I+ Q+V +++ 
Sbjct: 200 ESE----GIKVEPDALQLVCRKAQGSMRDAQSILDQVIAFSAQSGGDGAISYQNVAELLN 255

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
                 +  + +A   G     I +A F + +       L   ++  + L  +  ++   
Sbjct: 256 YIDDEQLFAVTDAIAAGDAPAMIEVAQFVIQNGYDEQDFLEKLIEHLRNLLMVQNLRSSR 315

Query: 272 NISFEKIIQK 281
            +     +++
Sbjct: 316 LVERPDAVRE 325


>gi|332313135|gb|EGJ26230.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str.
           Scott A]
          Length = 556

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 156 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 213

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 214 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 267


>gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071]
 gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071]
          Length = 580

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|116874071|ref|YP_850852.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|256372082|ref|YP_003109906.1| DNA polymerase III delta subunit-like protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008666|gb|ACU54233.1| DNA polymerase III delta subunit-like protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 335

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 87/287 (30%), Gaps = 12/287 (4%)

Query: 70  FWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
                +   +F+ ++ I++  L     ++  + ++        N ++ +   E  K+   
Sbjct: 44  LATSFSQLPMFADRRRIVVTGLGALAAREAGELVKAASEAPGPNEVVFVVVGEPAKSVV- 102

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
               +                     IE++      S        L   LG +   + + 
Sbjct: 103 -AHVDNHVEDRRRL----RSDRRRAAIEDAFREVGLSAEPAVVDQLAWALGEEVSRAGSI 157

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
            + L     E   + E+ +  +  +       E+ +A   G +  A+ + D  LA++MP+
Sbjct: 158 ARSLVGVVGEGGRVDEEALGAVALEVGARPPWELTDAIEAGDLPRALEVLDAMLAAQMPT 217

Query: 248 HALLHGFLQKFQLLEKIH--IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
             LL    ++   L  +     ++ + ++                R + + +  I     
Sbjct: 218 VLLLTLIERRVLELFAVAGTGARDGAGVNAALREAGLRPRPDFAARALGELAAAI-GPER 276

Query: 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352
               +  +       R           + ++  A  +       +R+
Sbjct: 277 AGRLVRLVATAARDLRGDSVAPDETTLRLLVARA-ASLVPRRAQRRS 322


>gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254899839|ref|ZP_05259763.1| hypothetical protein LmonJ_08496 [Listeria monocytogenes J0161]
 gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 579

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
           FSL J2-064]
          Length = 551

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 151 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 208

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 209 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 262


>gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
 gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
          Length = 368

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 97/332 (29%), Gaps = 46/332 (13%)

Query: 38  INQFKKNISITY----HDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIE 89
                + I+        D F+  +  L+A       +I    +++       K K+ +I+
Sbjct: 56  ARILARKINEKDGSVSEDGFAYNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIID 115

Query: 90  NLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN 146
            +        +   + + +   + I I+               EK   +  I   C   +
Sbjct: 116 EVHMLSSAAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYD 163

Query: 147 -----KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                   + + +             +A  ++     G    + +   +LS++      I
Sbjct: 164 FKRIVIEDIQNHLRNIAEKENIRYEDDALYLIAQKADGALRDALSIFDRLSTFS--QRNI 221

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T     +++          I++   + KI   +   +  +      H  + G    F   
Sbjct: 222 TLAKAAEVLNILDYDQYLNIVDLVKENKIPEVLSAFNEIVKKGFDPHIFIAGLGNHF--- 278

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                +    N S  ++I+     +    +    E  + W    + + +   +H     +
Sbjct: 279 ---RDLMMAQNASTMELIE-----VGEKTKAKFVEQGQKWTAQQLIDGIEICNHADINYK 330

Query: 322 --KKKYLEKNIIFQTILYIAQTACKNNNFYKR 351
             K   L   I    ++ +A       +  K+
Sbjct: 331 NSKNPRLTVEI---ALMQLASLTANLGDTKKK 359


>gi|317011447|gb|ADU85194.1| DNA polymerase III subunit delta [Helicobacter pylori SouthAfrica7]
          Length = 340

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I          I +  +         A + +K  S   + +   SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYAQAIGSLIKLN-NPNAETSFFYASDYEK--SLIMSLLEQNSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129
           +  +++++ + +  KK  +    L    ++   ++ +II     K + T        + K
Sbjct: 73  ESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYSSEAIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       L    +       +  ++E        IS      L      D   + N
Sbjct: 133 FFQKSPLKDEALCTRFFTPKTWESLKFLQERANFLHLDISSHLLNALFEINNEDLGVAFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  I  + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAIL---NAPIALEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKR 247

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +L G  + F  L       + +     K +      
Sbjct: 248 DADILRGLERYFYQLFLFFARIKTTGSMDAKEVLGYAPP 286


>gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score = 46.1 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII 210
           +  L     +I  +A Q       GD  A+ N L+        D      IT Q  +D +
Sbjct: 168 DRGLADYNVNIDDDALQYFSTQSQGDVRAALNALELAVLSTNPDENGEVHITLQDAEDCL 227

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +        A+      + +           +  +  
Sbjct: 228 QKGSFMSDKDGDMHYDVMSAFQKSIRGSDTDAALHYLARLIEAGDLPTIARRLLVISY-- 285

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  L ++ + +         +  ID  +  
Sbjct: 286 -EDIGLASPGAGQRTLAAIEAAERLGFPEARIPLSQAVIELCLSPKSNSGITAIDAALSD 344

Query: 320 ARK 322
            RK
Sbjct: 345 IRK 347


>gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
 gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
          Length = 579

 Score = 46.1 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T + 
Sbjct: 179 TTQDIIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|297571411|ref|YP_003697185.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595]
 gi|296931758|gb|ADH92566.1| AAA ATPase central domain protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 442

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 17/122 (13%)

Query: 149 HLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            +  LI+ +L          ++  +A+  ++   G D   +   L+  +S    +  I+ 
Sbjct: 176 DIATLIDRALSDERGFGGNVTLESDARDQIIMLAGSDARRALTILE--ASASAGNRHISI 233

Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           + V+  +           D H   +   I +     +  A+      + +      +   
Sbjct: 234 EDVERAVDVHTVRYDRNGDQHYDVVSAFIKSIRGSDVDAAMHYLARMVEAGEDPRFIARR 293

Query: 254 FL 255
            +
Sbjct: 294 LM 295


>gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
           magnetotacticum MS-1]
          Length = 597

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L    E         I   A +++     G      + L +          +TE  
Sbjct: 191 EMEVLSRHFEAIAAKEGAEIEPAALKLIARAADGSVRDGLSLLDQAI--SHGAGAVTETQ 248

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       + ++++A ++G +  A+       A+      +L   L+    L ++ 
Sbjct: 249 VRDMLGLADRARVFDLLDAVMKGDVPTALDQITDQYAAGADPAVVLQDMLELVHWLTRLK 308

Query: 266 IIKECSNI 273
           +  + ++ 
Sbjct: 309 VTPDAADQ 316


>gi|149194266|ref|ZP_01871363.1| hypothetical protein CMTB2_06691 [Caminibacter mediatlanticus TB-2]
 gi|149135441|gb|EDM23920.1| hypothetical protein CMTB2_06691 [Caminibacter mediatlanticus TB-2]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
           +IEE     + SISKEA   L  ++  + I  R E++KLS Y      I+   VK ++  
Sbjct: 124 IIEEIAKEYKVSISKEAIDFLTKSV--EPIFFRKEIEKLSLYT---NNISLDDVKKLVFI 178

Query: 213 THVLYIEEIINATIQGK 229
                 EE+    ++G+
Sbjct: 179 YKEESFEELFVQILRGE 195


>gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
           17745]
 gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
           17745]
          Length = 902

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 77/213 (36%), Gaps = 17/213 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +E+ +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +         S+   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFSLDSA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                +      LA    +  ++   +Q  + L
Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292


>gi|297791151|ref|XP_002863460.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309295|gb|EFH39719.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 970

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 70/193 (36%), Gaps = 19/193 (9%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              +++ ++      +  I K+A +++ +   G    +   L++LS        ++   V
Sbjct: 519 DADIINSLQLIASKEEIDIEKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRVSVPLV 575

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL+          +   +
Sbjct: 576 QEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMS---------QLATV 626

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
           I +    S++    + ++     ++ + +E     +   +++ L  +       R     
Sbjct: 627 ITDILAGSYDFTKDQCKRK-FFRRQPLSKE-----DMEKLKQALKTLSESEKQLRVSSD- 679

Query: 327 EKNIIFQTILYIA 339
           +   +   +L +A
Sbjct: 680 KLTWLTAALLQLA 692


>gi|298376006|ref|ZP_06985962.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
 gi|298267043|gb|EFI08700.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 3_1_19]
          Length = 586

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           +++  L+A       +I T  +++       K K+ +I+ +        +   + + +  
Sbjct: 90  YNIHELDAASNNSVDDIRTLIDQVRIPPPIGKYKVFIIDEVHMLTTAAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + + I+               EK   +  I      Y  ++I + D++E          
Sbjct: 150 HHALFIL------------ATTEKHKVLPTILSRCQIYDFSRISIADMVEHLQYVSSQEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  ++     G    + +   ++ S+   +  IT Q V D +      Y   + 
Sbjct: 198 VTAEPEALNVIAQKADGGMRDALSIFDQVVSFT--NGNITYQAVIDNLNVLDYEYYFRLT 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           +A + G +  ++++ +  L        ++ G    F+ L    
Sbjct: 256 DAILSGNVRASLLILNEILGKGFDGQNIITGLAGHFRDLLVCR 298


>gi|228969940|ref|ZP_04130660.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228789762|gb|EEM37624.1| DNA polymerase III, delta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN 119
           ++K++LI++   L+++K+ L+     LEE I +     I++  + 
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAP 117


>gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 642

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 26/206 (12%)

Query: 19  LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINS 76
                 + +G          +   +++       + ++ LNA +      I        S
Sbjct: 41  PDRRAVVLHGPAGVGKTSTAHALARDL------DWEVIELNASDQRTAGVIERVAGSAAS 94

Query: 77  TS-LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRK 129
            +  F  K++I+++         ++  +  +  II   +    I++ +N+I     T+R 
Sbjct: 95  MNTFFGGKRLIILDEADNIHGTADRGGMRAIAGIIKNTLQ--PIVLIANDIYGLTPTIRN 152

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           +  +                ++  +++         S +A Q +    GGD    R+ + 
Sbjct: 153 LCLEIKFGSV------QSRSMVPALKKVCESEDILCSPDAIQQIAEGAGGD---LRSAIN 203

Query: 190 KLSSYCLEDILITEQHVKDIICDTHV 215
            L +       +  + +     D   
Sbjct: 204 DLQAAATGRKTLEVEDLSTSGRDVKE 229


>gi|46908883|ref|YP_015272.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
           Clip81459]
 gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 579

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +T   
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVTVDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti
           MAFF303099]
 gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099]
          Length = 604

 Score = 45.7 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 50/156 (32%), Gaps = 3/156 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +   L+  +         S+  +A  ++     G    S + L +          ++ + 
Sbjct: 199 DAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGAVSAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +     A+L    +   L+ ++ 
Sbjct: 257 VRAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEFNHLVTRLR 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            +    +        + ++     +   ++   R W
Sbjct: 317 FVPTAMD-DASLSQDERQRGADFARALSVRVLSRTW 351


>gi|58584691|ref|YP_198264.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419007|gb|AAW71022.1| DNA polymerase III, gamma/tau subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 494

 Score = 45.7 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 25/207 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS-C-----YPDNKIH 149
              + L + + +   +   I+ + EIKK             +  I+ C     Y      
Sbjct: 131 SAFNALLKTLEEPPPSVKFILATTEIKK-----------IPITIIARCQRFDLYNIPVAK 179

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           +++ + +        I KEA +++  + G     +   + +   Y  +  +I+ + V DI
Sbjct: 180 IVERLNDIAQRESYFIEKEASELIARHSGNSMRNALFLMNQAVLY-NKGGVISTKSVMDI 238

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +       I +++ A +   +  A+ L D  +       ++  G LQ  QL+ +  + KE
Sbjct: 239 LGLVDKDIIFDLMEAILGSDLQKALSLFDKAVE-TANPLSIFEGLLQTIQLICRFLVTKE 297

Query: 270 CSN------ISFEKIIQKTEKNIIPMK 290
             +       +  K +   +  I   +
Sbjct: 298 IDSSVTECEKNRIKDLGVKKSLIFFSR 324


>gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa]
 gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa]
          Length = 1190

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 58/194 (29%), Gaps = 21/194 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    +   L++LS   L    I+   V
Sbjct: 628 DADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQK-ISVPLV 684

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  I     N +      + + +   AL+         +     
Sbjct: 685 QELVGLISDEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSY 744

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325
                    +             +       L   +   +R+ L  +       R     
Sbjct: 745 DFTKERPRRK----------FFRRNP-----LSKDDMEKLRQALKTLSEAEKQLRMSNDK 789

Query: 326 LEKNIIFQTILYIA 339
           L    +   +L +A
Sbjct: 790 L--TWLTAALLQLA 801


>gi|229163348|ref|ZP_04291300.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
 gi|228620129|gb|EEK77003.1| hypothetical protein bcere0009_41140 [Bacillus cereus R309803]
          Length = 428

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 28/187 (14%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYNVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +               + 
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD--------LQSIGRR 278

Query: 261 LEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314
           L  +           +       I+  E+   P  R  +    + +            +D
Sbjct: 279 LLIMAYEDVGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 338

Query: 315 HRIHLAR 321
             +H  R
Sbjct: 339 AALHDLR 345


>gi|149010609|ref|ZP_01831980.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182683684|ref|YP_001835431.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14]
 gi|303255822|ref|ZP_07341863.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS455]
 gi|303261436|ref|ZP_07347384.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264103|ref|ZP_07350024.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397]
 gi|303266286|ref|ZP_07352177.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457]
 gi|303268725|ref|ZP_07354515.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458]
 gi|147765090|gb|EDK72019.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182629018|gb|ACB89966.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CGSP14]
 gi|301801611|emb|CBW34309.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae
           INV200]
 gi|302597206|gb|EFL64311.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS455]
 gi|302637570|gb|EFL68057.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP14-BS292]
 gi|302641785|gb|EFL72142.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS458]
 gi|302644216|gb|EFL74472.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS457]
 gi|302646508|gb|EFL76734.1| DNA polymerase III subunit delta [Streptococcus pneumoniae BS397]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCLE---DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKVDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter
           xylanophilus DSM 9941]
          Length = 567

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 18/195 (9%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L++ + E          +EA   +    GG    +   L ++SS+   +  +T   V+
Sbjct: 181 GTLVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFS--EGRVTVALVR 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           +++       + E  +A  + +  +A+ + D   +            +   ++L  +   
Sbjct: 239 ELLGSAGPEMLAETADALHERRAADALRVVDRLSSEGRDLGQFAAELISHLRVLMLLPH- 297

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKY 325
                 + E  + +        +R  L+E  R          +  +       R+     
Sbjct: 298 ------APEAALAEAGP----EERPALEEQARRIPTGETVRMIEALGETSGRIRRGGDPK 347

Query: 326 LEKNIIFQTILYIAQ 340
           LE  +     L +A+
Sbjct: 348 LELELC---FLKLAR 359


>gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus
           OF4]
 gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus
           OF4]
          Length = 561

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 2/127 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  + E LL     +  EA  ++     G    + + L +  SY   +  +T + V
Sbjct: 180 NTAIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLLDQAISYA--EGPLTLEDV 237

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             I        +  ++ A         +   D  +        +L   +   + L     
Sbjct: 238 LAITGAVSEQVLVNLVEAVANKDSAVVLESLDQLVRDGKEPGRILEDLIYYMRDLLLCKT 297

Query: 267 IKECSNI 273
             +  ++
Sbjct: 298 APDSKDL 304


>gi|255325072|ref|ZP_05366178.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
 gi|255297637|gb|EET76948.1| recombination factor protein RarA [Corynebacterium
           tuberculostearicum SK141]
          Length = 547

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           +  L   +  I+ EA   L+   GGD   +   L+  +    +   IT Q V D +    
Sbjct: 282 DRGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNVNKAV 341

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                  D H   +   I +     +  A+      + +      +    +  
Sbjct: 342 VRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLIVH 394


>gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
 gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
          Length = 892

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +E+ +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +          +   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDSA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                +      LA    +  ++   +Q  + L
Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292


>gi|307708953|ref|ZP_07645413.1| DNA polymerase III, delta subunit [Streptococcus mitis SK564]
 gi|307620289|gb|EFN99405.1| DNA polymerase III, delta subunit [Streptococcus mitis SK564]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 30/269 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++     + +K+ L        EE +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLVKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFE 276
             L+   L +F+   ++ I+ E   I  +
Sbjct: 247 IKLIAVMLGQFRTFTQVKILSESGQIEAQ 275


>gi|148989846|ref|ZP_01821140.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP6-BS73]
 gi|225854272|ref|YP_002735784.1| DNA polymerase III subunit delta [Streptococcus pneumoniae JJA]
 gi|225860738|ref|YP_002742247.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650464|ref|ZP_04524716.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CCRI
           1974]
 gi|237821906|ref|ZP_04597751.1| DNA polymerase III subunit delta [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229128|ref|ZP_06962809.1| DNA polymerase III subunit delta [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255807|ref|ZP_06979393.1| DNA polymerase III subunit delta [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502549|ref|YP_003724489.1| DNA-directed DNA polymerase III subunit delta [Streptococcus
           pneumoniae TCH8431/19A]
 gi|147924788|gb|EDK75872.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP6-BS73]
 gi|225723658|gb|ACO19511.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae JJA]
 gi|225728215|gb|ACO24066.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238144|gb|ADI69275.1| DNA-directed DNA polymerase III delta subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390121|gb|EGE88464.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA04375]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      + +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 428

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 22/184 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLED--ILITEQHVKDII 210
           E+ L     +++ EA +   +  GGD  ++ N  EL  LSS+  ++    IT +  ++ +
Sbjct: 167 EKGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFATDEQAGEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-- 258
                      D H   +     +     +  A+      + +       L    ++   
Sbjct: 227 QKKSFVHDKDGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD-----LQSICRRLLI 281

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRI 317
              E I +    +       I+  E+   P  R  +    + +            +D  +
Sbjct: 282 MAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAAL 341

Query: 318 HLAR 321
           H  R
Sbjct: 342 HDLR 345


>gi|148985886|ref|ZP_01818980.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP3-BS71]
 gi|148997159|ref|ZP_01824813.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575424|ref|ZP_02721360.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           MLV-016]
 gi|307067367|ref|YP_003876333.1| DNA polymerase III subunit delta [Streptococcus pneumoniae AP200]
 gi|147756859|gb|EDK63899.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922032|gb|EDK73156.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP3-BS71]
 gi|183578449|gb|EDT98977.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           MLV-016]
 gi|301799780|emb|CBW32349.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae
           OXC141]
 gi|306408904|gb|ADM84331.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae AP200]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|260654883|ref|ZP_05860371.1| putative DNA-binding protein [Jonquetella anthropi E3_33 E1]
 gi|260630385|gb|EEX48579.1| putative DNA-binding protein [Jonquetella anthropi E3_33 E1]
          Length = 305

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 18/180 (10%)

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
                E  +  LF  K+ I++E+  +   +       I +     +++     + + +  
Sbjct: 42  GQLAEESCACGLFDAKRAIVVEDGLSLGPLPADWPAKIGEQDDVAVLL-----LYEKSP- 95

Query: 128 RKIAEKFTSVLA-------ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +K+  K                +PD +      + +        +S++A  +L+  +  D
Sbjct: 96  QKLLGKAAYAACRVVKNEPAPTWPDRRRE---WLVQLGRQEGIRLSRDAAALLVDWIE-D 151

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
               R EL K          I    V  +  D     + ++++A     +       +  
Sbjct: 152 EEELRGELDKFKL-AFPGAPIGVAEVNQLSSDEGGRALLDLLDAVADASLEGVKKSLESL 210


>gi|313125638|ref|YP_004035908.1| replication factor c large subunit [Halogeometricum borinquense DSM
           11551]
 gi|312292003|gb|ADQ66463.1| replication factor C large subunit [Halogeometricum borinquense DSM
           11551]
          Length = 487

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 82  KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFT 135
            +++++++         ++     +  ++ K   N  I++ +NE    ++ LR       
Sbjct: 106 GRQLVIMDEADNIHGNYDRGGAGAITRLVKK--SNQPIVLIANEYYDMSSGLRSA----- 158

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               I     +   ++ ++ + L         +A   +     GD    R+ ++ L +  
Sbjct: 159 -TREIEFRDVSARSIVPVLRDILRKEGIEFDSDALDRIAETNSGD---LRSAVKDLQAAA 214

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
                +T + V     D   + + E I++ ++    
Sbjct: 215 DGADRLTVEDVVTGSRD-KAIGLFEYIDSVLKEDTA 249


>gi|145223251|ref|YP_001133929.1| hypothetical protein Mflv_2664 [Mycobacterium gilvum PYR-GCK]
 gi|315443711|ref|YP_004076590.1| DNA polymerase III subunit delta [Mycobacterium sp. Spyr1]
 gi|145215737|gb|ABP45141.1| DNA polymerase III, delta [Mycobacterium gilvum PYR-GCK]
 gi|315262014|gb|ADT98755.1| DNA polymerase III, delta subunit [Mycobacterium sp. Spyr1]
          Length = 319

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 94/290 (32%), Gaps = 27/290 (9%)

Query: 25  IFYGSDKGLIFELINQF----KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +  G ++ L+ E          +  + T   P   +    + + +       E+ S SLF
Sbjct: 9   LVLGDEELLV-ERAVAAVLKSARKSAGTADVPVDRLRAGEVSVSE-----LAELLSPSLF 62

Query: 81  SKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL----RKIAEKFT 135
           + ++++++E+ +   K+ +  ++          +++I  +   +   L    +K+  +  
Sbjct: 63  ADERVVVLESAAEAGKEAVALIQSAAADLPAGTLLVIVHSGGGRAKALADHVKKLGAEVH 122

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
               I+          D + +     +  +  +    +L  +G D         +L    
Sbjct: 123 PCARIA----KASERADFVRKEFRSLRVKVDDDTVTAVLDAVGSDIRELAAACSQLV--A 176

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
                +    V+        +   +I +  + G +  A     + + +  P   L     
Sbjct: 177 DTGGSVDAAAVRRYHSGRAEVKGFDIADKAVLGDVAGAAEALRWAMMAGEPHVVLADALA 236

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
           +    + +        +    ++  +      P +    Q+  R W+++ 
Sbjct: 237 EAVHTIAR----VGPLSGDPYRLAGELGMP--PWRVQKAQKQARRWSRDS 280


>gi|308190065|ref|YP_003922996.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624807|gb|ADN69112.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 321

 Score = 45.3 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YGS+K  I + IN+  K    +    F++      E  +N+ +    I+S  LF+KK+I
Sbjct: 4   IYGSEKFFIEQEINKIVKKFPNSAITTFNI------ENDENVDSLIQFISSGDLFNKKRI 57

Query: 86  ILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-----EIKKNNTLRKIAE 132
           I+I +L        S ++  ++ L + I  N  + +I + +N     +I KN     I  
Sbjct: 58  IVINDLFYFEKKLSSNDETNVNNLIKSIDNNSSDELIFVNTNISNKEQINKNFFTNFIFN 117

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K      I     +   L   +   +     +I   A   LL  +  D      E+ KL 
Sbjct: 118 KLQQNNFIEANSIDDNQLTKKVVSLVQQKGGTIDALATSALLKKIPNDLYLINLEIDKLI 177

Query: 193 SYCLEDILITEQHVKDIICD 212
           +   ++  ITE  +   + D
Sbjct: 178 N---QNKHITENMINVSVID 194


>gi|229031974|ref|ZP_04187959.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271]
 gi|228729329|gb|EEL80321.1| DNA polymerase III, delta subunit [Bacillus cereus AH1271]
          Length = 130

 Score = 45.3 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            +++ YG++   I E I              F++V  +  E    +     +  +   F 
Sbjct: 15  PLYLVYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVIEDARTLPFFG 72

Query: 82  KKKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           ++K++LI++   L+++K+ L+     LEE I +     I++  +   ++ +   L+  
Sbjct: 73  ERKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKLQNY 130


>gi|148992428|ref|ZP_01822123.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488434|ref|ZP_02712633.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP195]
 gi|147928745|gb|EDK79758.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP9-BS68]
 gi|183573102|gb|EDT93630.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae SP195]
 gi|332073111|gb|EGI83590.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA17570]
          Length = 345

 Score = 45.3 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|149021629|ref|ZP_01835660.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP23-BS72]
 gi|168486742|ref|ZP_02711250.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490852|ref|ZP_02714995.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|225856439|ref|YP_002737950.1| DNA polymerase III subunit delta [Streptococcus pneumoniae P1031]
 gi|147930090|gb|EDK81076.1| DNA polymerase III subunit delta [Streptococcus pneumoniae
           SP23-BS72]
 gi|183570239|gb|EDT90767.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574695|gb|EDT95223.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|225724471|gb|ACO20323.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae P1031]
 gi|332077179|gb|EGI87641.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA17545]
 gi|332202628|gb|EGJ16697.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA41317]
          Length = 345

 Score = 45.3 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      + +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|304372855|ref|YP_003856064.1| hypothetical protein MHR_0052 [Mycoplasma hyorhinis HUB-1]
 gi|304309046|gb|ADM21526.1| Putative uncharacterized protein [Mycoplasma hyorhinis HUB-1]
          Length = 317

 Score = 45.3 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 109/310 (35%), Gaps = 19/310 (6%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
             +F  YG+D     + + Q            F +V + + +   +I    N I +  LF
Sbjct: 6   FNMFFVYGTDSYFTKKKVEQILAKFID-----FEVVDVLSTDSFFDI---MNTITTRDLF 57

Query: 81  SKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI 140
              K+ +  N    K      ++I  K I +   +I   E+++ N  +KI   F      
Sbjct: 58  GSNKLFIFHNFLDTKLTNSEEKKIAKKLIDSSSPVIFLYELEEENQEKKIFSSFFYSHFF 117

Query: 141 S---CYPDNK---IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                +         ++  I + +   Q +I +     L   L  +      EL KL  Y
Sbjct: 118 KSSSVFKTETLSDKTIIKFISKFIEENQGTIDESQLLTLSLKLPLNGSIIEKELNKLLLY 177

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              D  ITE+ +++++           INA     + +        +        L+   
Sbjct: 178 ---DKNITEESIENLLTKYDSDSDWNFINAFTDHDVASTWNFYKEKINQGKKIQFLISQL 234

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI-LQESLRIWNKNLVRETLHKI 313
             K  +L  I  + +    +   I ++ + +I  +K+ +   + + I     + + L KI
Sbjct: 235 SSKL-MLAFICFLYKEEKYNEFDIQKELQIHIFQVKKAVQFYKKIGITKLQELIKLLAKI 293

Query: 314 DHRIHLARKK 323
           D +I   +  
Sbjct: 294 DRKIKSNQVN 303


>gi|193216667|ref|YP_001999909.1| DNA polymerase III, delta subunit [Mycoplasma arthritidis 158L3-1]
 gi|193001990|gb|ACF07205.1| DNA polymerase III, delta subunit [Mycoplasma arthritidis 158L3-1]
          Length = 322

 Score = 45.3 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 113/328 (34%), Gaps = 34/328 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++   G++   I E + +    +   Y + F + + +      N     + I++T +FS 
Sbjct: 1   MYFIRGNENYFIDEEVAKISNALQSQYGENFKVYLFSQQF---NFEEVVDLISNTDIFST 57

Query: 83  KKIILIE--------NLSTEKKVLDCLEEIIIKNICNHIIIIK------SNEIKKNNTLR 128
            K+++ +        N   +K ++D    +I   + +  I+        +   K  + L 
Sbjct: 58  NKLLIFKDLLWFNEKNAKVDKNLVDEFLYLISTAVSDSTIVFTNFQEKYAKTFKP-SELY 116

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K  EK   ++ +    D    +   +++ +     +I       L+++L  +     NE+
Sbjct: 117 KFIEKNAKLIEVEKLSD--RQIYAFVQKLIKSRGGTIDDFTLVELVSSLPNNLNLIENEI 174

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS---KM 245
            +L     E   IT   + +              +A I  K  +   +           +
Sbjct: 175 TRLML---EKKEITPGMIANSNLSISSNISYAFSDAFI--KFNSFSEIIKKLQEQLNYGI 229

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305
               +L    Q     ++I+ +K     S + I +    +I   +  +L   L     + 
Sbjct: 230 HPSQILAQIAQILSDCQRIYFLK-KQAQSLDNIAKSLNLHIY--RIKLLNSLLIKLEYSQ 286

Query: 306 VRE---TLHKIDHRIHLARKKKYLEKNI 330
           V+     L K+D  I   R    L   I
Sbjct: 287 VKRSLNELSKLDEDIKNDRIDGGLGLKI 314


>gi|269114978|ref|YP_003302741.1| hypothetical protein MHO_2040 [Mycoplasma hominis]
 gi|268322603|emb|CAX37338.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
          Length = 320

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 126/329 (38%), Gaps = 27/329 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G D  LI + + +          D   +    ++++++      ++I + SLFS 
Sbjct: 1   MYLIRGEDSYLINQELQKIIDLKFENQDDYSVITYNESIDLEQ----LSDDIFNQSLFSF 56

Query: 83  KKIILI--------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN------NTLR 128
           KK +++             + K ++   +++ K   N++I I   +IKKN      +   
Sbjct: 57  KKQVIVLKNIDFFNSKKKNDNKKMNDFLQLLEKGQDNNLIFILQ-DIKKNDISFNPSLAY 115

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K  E  + ++ I     +   + + I+E +L    +IS       L+    D     NE+
Sbjct: 116 KKIEYISKIIEIK--KPSDKDVYNYIKEYILKNGGNISSTTLLDFLSMFPNDLQQIINEV 173

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
            KL        ++   +   I  D     +   I   ++ K  + I   D        + 
Sbjct: 174 DKLLLQNKNIDMLLINNSNIISSDNIEFNLSNCI---LKQKSIDIIEAIDEQKKYGNGAS 230

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
            +L      F  +   +++ E  N S  + I KT  +I   +  +    ++  NK+ ++E
Sbjct: 231 EILSQISYLFYQIYCTYLLME--NTSDNEYISKTL-SIHSYRIKLFMSYIKRTNKHKLKE 287

Query: 309 TLHKIDHRIHLARKKKYLEKNIIFQTILY 337
            +  +       +     E+N + + IL+
Sbjct: 288 LIELLADIDIAIKSGLLDEENALNKFILF 316


>gi|227824061|ref|YP_002828034.1| DNA polymerase III subunits gamma and tau [Sinorhizobium fredii
           NGR234]
 gi|227343063|gb|ACP27281.1| DNA polymerase III, subunits gamma and tau [Sinorhizobium fredii
           NGR234]
          Length = 645

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 10/187 (5%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +  + 
Sbjct: 222 ASDLVGLFSTILNKEAVRFEPEALAMVARAAEG---SARDGLSLLDQAIAHGGGSVEMET 278

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G    A+        +      +L        L+ ++ 
Sbjct: 279 VRSMLGLADRARIVDLFEHIVKGDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMK 338

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + E +N      I++  +         +    RIW        L  I      AR    
Sbjct: 339 YVPEAANDQSFSEIER-RRGAEFAGSVAVTTLSRIWQM-----LLKGIPEAESSARPAGA 392

Query: 326 LEKNIIF 332
            E  +I 
Sbjct: 393 AEMVLIR 399


>gi|86355786|ref|YP_467678.1| DNA polymerase III subunits gamma and tau [Rhizobium etli CFN 42]
 gi|86279888|gb|ABC88951.1| DNA polymerase III, tau subunit protein [Rhizobium etli CFN 42]
          Length = 624

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 50/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L          +  + 
Sbjct: 200 ASDLVGLFTTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGAVQAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +      +L        L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAGALGEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +N      I++T+      K   +    RIW
Sbjct: 317 YVPDAANDPSLSEIERTKAA-EFAKSIAVTTLSRIW 351


>gi|311739533|ref|ZP_07713368.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305349|gb|EFQ81417.1| replication-associated recombination protein A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 463

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           +  L   +  I+ EA   L+   GGD   +   L+  +    +   IT Q V D +    
Sbjct: 198 DRGLGERKIRITDEALDQLVLLAGGDARRTLTYLEAAAEAVDDGGEITPQTVTDNVNKAV 257

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                  D H   +   I +     +  A+      + +      +    +  
Sbjct: 258 VRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLIVH 310


>gi|220904889|ref|YP_002480201.1| DNA polymerase III delta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869188|gb|ACL49523.1| DNA polymerase III delta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 346

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 84/319 (26%), Gaps = 62/319 (19%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIII------ 116
           ++    FW  +    LF   + +++   +     V   +   + +               
Sbjct: 56  EEPPQGFWEHLTLQGLFGAPRALVVRQANLWPAAVWKKISHALARPSDQCWPFFCLEVNW 115

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQK 163
           +  + K    L K+           C  + D            +  +   + +       
Sbjct: 116 ERGQPKIPAHLGKL----------PCMAFADKKGWIWRQEGLGERTVRKYVLQRCQALGL 165

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCL----------EDILITEQHVKDIICDT 213
             + +A +   A++  D +A  NEL KL   C           +D  ++      +I   
Sbjct: 166 RFAPDALEQFCASVPPDALAIENELDKLILLCRAMADSAQEQKDDGTVSL----AMISTA 221

Query: 214 H---VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
                  +   I     G +                  +LL    ++ +LL +       
Sbjct: 222 SWSPECDVFACIRHMQAGNLAAVWKELARNKDGDSLLFSLLALLAREMRLLWQCQ----- 276

Query: 271 SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK-KKYLEKN 329
                          + P   +  ++  R      + + +  I       +  ++  +++
Sbjct: 277 ---------AGENPRMRPQDASAKKQLARRLGPAAIAQGMSLIVDAELQVKSGRRSPDQS 327

Query: 330 IIFQTILYIAQTACKNNNF 348
           + F      A  A      
Sbjct: 328 LDFLAARMTALFAQVQGRA 346


>gi|310779150|ref|YP_003967483.1| DNA polymerase III delta [Ilyobacter polytropus DSM 2926]
 gi|309748473|gb|ADO83135.1| DNA polymerase III delta [Ilyobacter polytropus DSM 2926]
          Length = 332

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 96/252 (38%), Gaps = 20/252 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           ++  YG +   +       KK I     DP  +        QK    F   I+  S+F  
Sbjct: 5   LYFIYGDNP--LELKYEDMKKEIIKK--DPGIVPRY-FDVSQKEEEDFLQAISINSMFGG 59

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-----KKNNTL-RKIAEK-FT 135
            ++++++     KK  + ++ +   NI N  +II   E      K  N + +K+ ++   
Sbjct: 60  SELLVLKRFQLLKKPENFVKAMENYNIVNKDVIILYEESLNAFGKPENPVVKKLLDRISK 119

Query: 136 SVLAI-SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
           +   I +    N   L+  +   L      I +     LL  +G D +  R E++K+  +
Sbjct: 120 NFKVIEARQGKNGKSLVFYVSSEL-----EIKENDADKLLQMIGRDSMQVRQEVEKIKLF 174

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              +   T + +K II  +   +++ +++  + G   N +        + M    +L   
Sbjct: 175 LGGEK-FTFEKIKGIISLSREYHMKNLVDEFLAGNKENLLYHLKHE-KNYMSFIYILSNE 232

Query: 255 LQKFQLLEKIHI 266
           L     L+ +  
Sbjct: 233 LDILLKLKMLQA 244


>gi|109946865|ref|YP_664093.1| DNA polymerase III subunit delta [Helicobacter acinonychis str.
           Sheeba]
 gi|109714086|emb|CAJ99094.1| putative DNA polymerase III, delta subunit [Helicobacter
           acinonychis str. Sheeba]
          Length = 335

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 102/306 (33%), Gaps = 30/306 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I            +  +      +  A + +K  S     +   SLF 
Sbjct: 11  KAVFLYGEFDFFIHYYTQAISSLFKLN-NPNIETSLFYASDYEK--SLIMTLLEQDSLFG 67

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129
           +  +++++ + +  KK  +    L    ++   ++ +II     K + T        + K
Sbjct: 68  ESSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYSSEAIVK 127

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       + L++E   +    IS      L      D   + N
Sbjct: 128 FFQKSPLKDEAIYARFFTPKTWESLKLLQERANVLHLDISNHLLNTLFEINNEDLGIAFN 187

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+        IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 188 DLDKLAIL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKR 242

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV 306
              +L G  + F  L       + +     K I           + I +  ++  N   +
Sbjct: 243 DADILRGLERYFYQLFLFFAHIKTTGSVDAKEILGYAPP-----KEITENYIK--NAPRL 295

Query: 307 RETLHK 312
           +E  +K
Sbjct: 296 KEAGYK 301


>gi|254470770|ref|ZP_05084173.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
 gi|211959912|gb|EEA95109.1| DNA polymerase III, tau subunit protein [Pseudovibrio sp. JE062]
          Length = 640

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 56/171 (32%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+ L+ E        IS EA  ++     G    S + L +          I    
Sbjct: 226 ESSTLVSLLREISGKEGIEISDEALTLIARAGEGSARDSLSLLDQAI--AHGAGRIEADE 283

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++    ++G I +A+               +L        L+ ++ 
Sbjct: 284 VRQMLGLADRSRVIDLFEHVMRGDIASALDELKAQYDVGADPAVVLSDLADFTHLVTRLK 343

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            + +    +     ++        ++  ++   R W   ++ + ++++ + 
Sbjct: 344 AVPKAGEENSVTESERQR-GREFAEKLSMRVLSRTW--QILLKGINEVQNA 391


>gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
 gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
          Length = 901

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +EI +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +          +   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFGLDSA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                +      LA    +  ++   +Q  + L
Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292


>gi|294808126|ref|ZP_06766895.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444669|gb|EFG13367.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 178

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 62/179 (34%), Gaps = 8/179 (4%)

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIIN 223
           +  +A  +L   +G D      EL+KL          +T + ++  I  +      E+ +
Sbjct: 1   MEPKATSMLADFVGSDLSRLTGELEKLIITLPAGQKRVTPEQIEKNIGISKDYNNFELRS 60

Query: 224 ATIQGKIYNAIMLADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           A ++  I  A  +  +F  + K     +    L  F     +       +      +   
Sbjct: 61  ALVEKDILKANKIIKYFEENPKTNPIQMTLSLLFSFYSNLMLTYYAPDKSEQGIANMLGL 120

Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338
                   R+ +  ++R ++     + + +I +    ++  +   +   +I+ + +  I
Sbjct: 121 RTP--WQARDYMA-AMRKYSGVKTMQIVGEIRYADAKSKGVQNSSMTDGDILRELVFKI 176


>gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5]
          Length = 420

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 26/201 (12%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +   +  L+E        ++  EA++ ++    GD     N ++  +  C  +  IT Q 
Sbjct: 164 DDEDMGRLVERGCAELGVTMDDEAREAIMTLCSGDGRRCLNTIEAAALLCQGN-HITRQD 222

Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
           ++D             D H  YI   I +       +A+      L +      +     
Sbjct: 223 IQDSTPRKIVRYDKNEDNHYDYISAFIKSVRGSDPDSALYYLAVMLEAGEDPLFIARRLA 282

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK------RNILQESLRIWNK-NLVRE 308
                   I   ++  N +   I        I  +      R  L ++            
Sbjct: 283 --------ILASEDIGNAAPGAINMAASTMTIVERIGMPEARITLAQTTVYLCLSPKSNA 334

Query: 309 TLHKIDHRIHLARKKKYLEKN 329
               ID  +   R+++ LE  
Sbjct: 335 AYLAIDKALASVRRERVLEVP 355


>gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
 gi|158447261|gb|EDP24256.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
          Length = 540

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            L +I+ +   + I I+ + EI K  +T+    ++F           N   +++ I   L
Sbjct: 139 ALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRI------NNSDIVENINYVL 192

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKL-SSYCLEDILITEQHVKDIICDTHVLY 217
                 I ++   ++     G   A R+ L  L          IT + + + +   ++  
Sbjct: 193 NNLNVEIEEDGINLISELSSG---AMRDALSLLDQVVATGKEKITIEDINECLGLVNLNM 249

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           + E+  + +       I      + +    H ++   ++ F+
Sbjct: 250 LFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFR 291


>gi|228987651|ref|ZP_04147765.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772111|gb|EEM20563.1| hypothetical protein bthur0001_43210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLETAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|319777359|ref|YP_004137010.1| DNA polymerase iii delta subunit [Mycoplasma fermentans M64]
 gi|238809535|dbj|BAH69325.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038434|gb|ADV34633.1| DNA polymerase III delta subunit [Mycoplasma fermentans M64]
          Length = 321

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 26  FYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKI 85
            YGS+   I + IN+  K    +    F++      E  +N+ +    I+S  LF+KK+I
Sbjct: 4   IYGSENFFIEQEINKIVKKFPNSAITTFNI------ENDENVDSLIQFISSGDLFNKKRI 57

Query: 86  ILIENL--------STEKKVLDCLEEIIIKNICNHIIIIKSN-----EIKKNNTLRKIAE 132
           I+I +L        S ++  ++ L + I  N  + +I + +N     +I KN     I  
Sbjct: 58  IVINDLFYFEKKLSSNDETNVNNLIKSIDNNSSDELIFVNTNISNKEQINKNFFTNFIFN 117

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K      I     +   L   +   +     +I   A   LL  +  D      E+ KL 
Sbjct: 118 KLQQNNFIEANSIDDNQLTKKVVSLVQQKGGTIDALATSALLKKIPNDLYLINLEIDKLI 177

Query: 193 SYCLEDILITEQHVKDIICD 212
           +   ++  ITE  +   + D
Sbjct: 178 N---QNKHITENMINVSVID 194


>gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2654]
          Length = 576

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+       +  I+ +A  ++     G    + + L +           T   
Sbjct: 188 EPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 245

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++I+  ++G    A+       A      A+L    +    +  I 
Sbjct: 246 VRAMLGLADRGRVLDLIDMILRGDAAGALAELSAQYADGADPMAVLRDLAEVTHWVSVIK 305

Query: 266 IIKECSNISFEKIIQKTE 283
           I  E +        ++  
Sbjct: 306 ITPEAAEDPTVSPDERAR 323


>gi|322376318|ref|ZP_08050811.1| DNA polymerase III, delta subunit [Streptococcus sp. M334]
 gi|321282125|gb|EFX59132.1| DNA polymerase III, delta subunit [Streptococcus sp. M334]
          Length = 345

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 97/272 (35%), Gaps = 23/272 (8%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           +F G+D+G    + +Q  K I     D  +    +  E+         E+ S   F+ +K
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSAD-LNFAYFDMKEVAYKDVEL--ELVSLPFFADEK 76

Query: 85  IILIEN----LSTEKKVLD-----CLEEIIIKN-ICNHIIIIKSNEIKKNNTLRKIAEKF 134
           I+++++     + +K+ L        EE +        ++I    ++     L K+ ++ 
Sbjct: 77  IVILDHFVDVTTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFVEGKLDSKRRLVKLLKRD 136

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                       +  L    ++         +  + + LL   G       +E+QK   +
Sbjct: 137 --AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLIKSG----FQFSEVQKNLLF 190

Query: 195 CL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                ED +I E+ + + I  T    I ++    +  K+  A  L             L+
Sbjct: 191 LQSYKEDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDKARDLVRDLTLQGEDEIKLI 250

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
              L +F+   ++ I+ E S  +  +I     
Sbjct: 251 AVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|332076043|gb|EGI86509.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA41301]
          Length = 345

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQMLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + +  L   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENFLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      D +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|223939210|ref|ZP_03631092.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514]
 gi|223892163|gb|EEF58642.1| DNA polymerase III, subunits gamma and tau [bacterium Ellin514]
          Length = 609

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 57/368 (15%)

Query: 7   HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKK--------NISITYHDPF-- 53
            + + ++  N   S+ +   ++F G        +   F K         +     DP   
Sbjct: 21  QEHVSQTLSNAIASNRIAHAYLFVGPRGTGKTTIARIFAKCLNCTGGPKVDFPDDDPRCQ 80

Query: 54  ---SLVVLNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLE 102
                  L+ LEI    +    EI             SK KI +I+ +    K+  + L 
Sbjct: 81  EITEGRSLDVLEIDGASNRGIEEIRELRDTVKYAPATSKFKIYIIDEVHMLTKEAFNALL 140

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL-MDLIEESLL 159
           + + +   +   +                E    +  I   C   +   +   LI + L 
Sbjct: 141 KTLEEPPAHVKFMF------------ATTEPEKVLPTILSRCQRFDLRRIPSALITKHLA 188

Query: 160 I----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215
                 +  I   A   +     G    + + L +L S+C +   I E  V  +   T  
Sbjct: 189 HISKLEKVKIDSGALDAIARGAEGGMRDAESTLDQLISFCGDK--IEEADVLSMFGLTAR 246

Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
             I  +  + + G+   A+   +    +      L+   L  F+ L    + K    +  
Sbjct: 247 GQILGLSKSILAGQADVALRELNDLSKNGKDLGRLVSDLLNHFRNLLIFQVSKGDLGLLE 306

Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
               +             L E     + + +   +  +       R +    K I+ +  
Sbjct: 307 VSEAEAA----------SLSEQGAGSSTDALTRIMEVLSDC--EMRLRDASSKKILVEVA 354

Query: 336 LYIAQTAC 343
           L  A  A 
Sbjct: 355 LLKAIEAR 362


>gi|260890414|ref|ZP_05901677.1| putative DNA polymerase III, delta subunit [Leptotrichia hofstadii
           F0254]
 gi|260860034|gb|EEX74534.1| putative DNA polymerase III, delta subunit [Leptotrichia hofstadii
           F0254]
          Length = 327

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 78/184 (42%), Gaps = 12/184 (6%)

Query: 60  ALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIII--K 117
            +++++N   F  +IN  S+FS +++++++     K + + L+ ++   I N  III   
Sbjct: 35  DVDLKEN-EKFLEKININSIFSSQELVVLKRAEKLKNIEEILKYVVNLEIVNKEIIIDYD 93

Query: 118 SNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174
             + K    L+K+ +   K   +       + +  +   +   L     SI+     +LL
Sbjct: 94  KEDGKFGVKLKKLLDEFSKNKQMEVFLFQKETEEEIRAYVINEL-----SINARDVAMLL 148

Query: 175 ANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI 234
             +G +    RNE+ K+  + L+      + +K+I+       I E+    +     + +
Sbjct: 149 EMIGNNPFKVRNEVAKIKIF-LDGEKFDIEKIKNIVSIEKEYQIYEMTRNILLNNPADVM 207

Query: 235 MLAD 238
              +
Sbjct: 208 RYLE 211


>gi|209551648|ref|YP_002283565.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537404|gb|ACI57339.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 626

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 50/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L          +  + 
Sbjct: 200 ASDLVGLFSTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGAVQAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +      +L        L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALGEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +N      +++T+      K   +    RIW
Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKGVAVTTLSRIW 351


>gi|307706319|ref|ZP_07643131.1| DNA polymerase III, delta subunit [Streptococcus mitis SK321]
 gi|307618237|gb|EFN97392.1| DNA polymerase III, delta subunit [Streptococcus mitis SK321]
          Length = 345

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI+++++     + +K+ L        EE +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFVDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +     ED +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKEDSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILSE-SGQTESQIASSLG 281


>gi|300118684|ref|ZP_07056412.1| DNA polymerase III subunit delta [Bacillus cereus SJ1]
 gi|298723933|gb|EFI64647.1| DNA polymerase III subunit delta [Bacillus cereus SJ1]
          Length = 130

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++ YG++   I E I              F++V  +  E    +     +  +   F +
Sbjct: 16  LYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEE--AYLEDVVEDARTLPFFGE 73

Query: 83  KKIILIEN---LSTEKKVLDC----LEEIIIKNICNHIIIIKSN--EIKKNNTLRKI 130
           +K++LI++   L+++K+ L+     LEE I +     I++  +   ++ +   L+  
Sbjct: 74  RKVLLIKSPLFLTSQKEKLEQNIKILEEYIGEPSPFSILVFVAPYEKLDERKKLQNY 130


>gi|217077772|ref|YP_002335490.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
 gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
           TCF52B]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 31/228 (13%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +EI          +     K+ +I+ +    K+  + L + + +  
Sbjct: 86  MDVLEIDAASNRGIDEIRKIRETVGYHAAQGNYKVYIIDEVHMLTKEAFNALLKTLEEPP 145

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDN--KIHLMDLIEE---SLLIGQKS 164
            N + I     +   N      EK    +   C   +   + + D+I+           +
Sbjct: 146 SNVVFI-----LATTNP-----EKIPQTIISRCQVIDFKNLTIEDIIKRLEFVCKKENIN 195

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           IS+EA   +     G    +   L+++S        IT + V++ +    +  I E+I++
Sbjct: 196 ISQEALNEIAKRANGGMRDALTILEQVS--KSSSKDITIEDVRETLGLVPIEVINEMIDS 253

Query: 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
              G I     + +    S       L       QLLE++ +  E  +
Sbjct: 254 IKIGDIKKTTEIIEKVYFSGKDPEVFL------MQLLEEMILKIESGD 295


>gi|217032307|ref|ZP_03437803.1| hypothetical protein HPB128_132g5 [Helicobacter pylori B128]
 gi|216945973|gb|EEC24587.1| hypothetical protein HPB128_132g5 [Helicobacter pylori B128]
          Length = 274

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 23/254 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISTLFKGNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNTLRKI------- 130
              +++++ + +  KK  +    L    ++   ++ +II     K + T  K        
Sbjct: 73  GSSLVVLKLDFALHKKFKENDINLFLKALERPSHNKLIIGLYNAKSDTTKYKYTSEIIVK 132

Query: 131 -AEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       +    +       +  ++E        IS      L      D   S N
Sbjct: 133 SFQKSPLKDEAICARFFIPKAWESLKFLQERANFLHLDISGHLLNALFEINNEDLSISFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +L KL+     +  IT + ++++  +   + ++++I      K  + + + D+ L     
Sbjct: 193 DLDKLAVL---NAPITLEDIQELSSNAGDMDLQKLILGLFLKK--SVLDIYDYLLKEGKK 247

Query: 247 SHALLHGFLQKFQL 260
              +L G  + F  
Sbjct: 248 DADILRGLERYFYQ 261


>gi|148653629|ref|YP_001280722.1| DNA polymerase III subunit delta [Psychrobacter sp. PRwf-1]
 gi|148572713|gb|ABQ94772.1| DNA polymerase III, delta subunit [Psychrobacter sp. PRwf-1]
          Length = 355

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 101/295 (34%), Gaps = 42/295 (14%)

Query: 73  EINSTSLFSKKKIILIE-NLSTEKKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTL 127
           E+NS SLF     I++  N   +K V D L          N  N ++ + +  +      
Sbjct: 69  ELNSLSLFDDATAIIVTGNHKPDKSVQDELTAFATDANTGNNPNSVLWLTAK-VDNRAKS 127

Query: 128 RKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
            K  +        I C   N+     L++        ++  EA Q L+       +++  
Sbjct: 128 SKWYQPFAQLGHVIDCNLYNENQRQQLLQIHAHRFGLALVPEAWQFLMMQTEHHLLSAYQ 187

Query: 187 ELQKLS-SY------------------CLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
            L +LS  +                      I I  + ++  +       + ++ +A + 
Sbjct: 188 ALWRLSYLFSPQIPSQAEGELNAQNTPAPPLITIDVEALQSALVSDAQYSVFDLSDAMLA 247

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           G     + + +   +++ P+  +L    +       + +I +       + +      I 
Sbjct: 248 GNAAQVVKIIEQLKSTEEPTPLVLWAISKD------MRLIMQLMGGKDAQSL-----GIW 296

Query: 288 PMKRNILQESLRIWNKNLVR---ETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
             K+++   + R  + + +    + L++ D  +    ++   E  +I Q  L + 
Sbjct: 297 SSKQSLYHSACRRQSLHSIADWPDILYQCDKAVKGLVRQPAWE--LILQAALRVT 349


>gi|330723562|gb|AEC45932.1| DNA polymerase III subunit delta [Mycoplasma hyorhinis MCLD]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 116/326 (35%), Gaps = 25/326 (7%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +F  YG+D     + + Q            F +V + + +   +I    N I +  LF  
Sbjct: 1   MFFVYGTDSYFTKKKVEQILAKFID-----FEVVDVLSTDSFFDI---MNTITTRDLFGS 52

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAIS- 141
            K+ +  N    K      ++I  K I +   +I   E+++ N  +KI   F        
Sbjct: 53  NKLFIFHNFLDTKLTNSEEKKIAKKLIDSSSPVIFLYELEEENQEKKIFSSFFYSHFFKS 112

Query: 142 --CYPDNK---IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              +         ++  I + +   Q +I +     L   L  +      EL KL  Y  
Sbjct: 113 SSVFKTETLSDKTIIKFISKFIEENQGTIDESQLLTLSLKLPLNGSIIEKELNKLLLY-- 170

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            D  ITE+ +++++           INA     + +        +        L+     
Sbjct: 171 -DKNITEESIENLLTKYDSDSDWNFINAFTDHDVASTWNFYKEKINQGKKIQFLISQLSS 229

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR--ETLHKID 314
           K  +L  I  + +    +   I ++ + +I       ++++++ + K  +   + L K+ 
Sbjct: 230 KL-MLAFICFLYKEEKYNEFDIQKELQIHIF-----QVKKAVQFYKKTGITKLQELIKLL 283

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQ 340
            +I    K   + +   F+  L ++ 
Sbjct: 284 AKIDRKIKSNQVNEKDAFEYFLLMSI 309


>gi|254819866|ref|ZP_05224867.1| hypothetical protein MintA_08074 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 92/293 (31%), Gaps = 28/293 (9%)

Query: 22  FVFIFYGSDKGLIFELI-----NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINS 76
            + +  G ++ L+ E          +K        P + +    +   +       E+ S
Sbjct: 6   PLHLVLGDEELLV-ERAVADVLRSARKRAGNDADIPVNRMRAGDVSTYE-----LAELLS 59

Query: 77  TSLFSKKKIILIENL--STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN---TLRKIA 131
            SLF+ ++I+++E    + +      +           ++++ S   +       L+K+ 
Sbjct: 60  PSLFADERIVVLEAAGEAGKDAAAVIVSAATDMPAGVVLVVVHSGGGRAKALATDLQKLG 119

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            +      I+   +     +D + +     +    ++    +L  +G D     +   +L
Sbjct: 120 AQVHPCARITKLSER----IDFVRKEFRALRVKADEQTVTAMLDAVGSDLRELASACSQL 175

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                    +    V+        +   +I +  + G I  A     + +    P   L 
Sbjct: 176 V--ADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLA 233

Query: 252 HGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
               +    + +        +    ++  +      P +    Q+  R W+++
Sbjct: 234 DALAEAIHTIGR----VGPLSGDPYRMASQLGMP--PWRVQKAQKQARHWSRD 280


>gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM
           2008]
 gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM
           2008]
          Length = 895

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           ++ LEI    +   +E+ +         +  +KK+ +I+       +  + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFIIDEAHMLTTEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   +          +   
Sbjct: 148 AHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLSYVAEKEGFDLDSA 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A Q++  +  G    + + L + +        IT Q V+++I      +I   ++A   G
Sbjct: 202 AAQLIAVHADGGLRDALSILDQCAGMA--TGSITPQVVEELIGLVSKEWIIHFLDALRNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                +      LA    +  ++   +Q  + L
Sbjct: 260 DGPKVLSYVHDALAEGRDATQIMEALIQHVRAL 292


>gi|163737243|ref|ZP_02144661.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
           gallaeciensis BS107]
 gi|161389847|gb|EDQ14198.1| DNA polymerase III, subunits gamma and tau [Phaeobacter
           gallaeciensis BS107]
          Length = 606

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+++        I+++A  ++     G    + + L +           T   
Sbjct: 195 EPEVMIGLLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 252

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++I+  ++G    A+       A      A+L   
Sbjct: 253 VRAMLGLADRGRVLDLIDMILRGDAAAALTELSAQYAEGADPLAVLRDL 301


>gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 4b H7858]
 gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
           str. 4b H7858]
 gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
           1816]
          Length = 579

 Score = 44.2 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  ++  L   +    ++A  I+     G    + + L ++ SY      +  + 
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISY--GSEEVAVED 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
             +I        + ++++A   G    AI      LA       L+   L  F+
Sbjct: 237 ALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFR 290


>gi|466975|gb|AAA17161.1| B1937_F2_36 [Mycobacterium leprae]
          Length = 389

 Score = 44.2 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 80/237 (33%), Gaps = 17/237 (7%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKN---NTL 127
           E+ S SLF+ ++I+++E  +   K    L             ++++ S   +     N L
Sbjct: 122 ELLSPSLFADERIVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANEL 181

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           + +         I+   +      D + + L   +  + + A   LL  +G D     + 
Sbjct: 182 QSLGATVHPCARITKLSERT----DFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASA 237

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A+    + +    P 
Sbjct: 238 CSQLV--ADTAGDVDADAVQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPL 295

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             L           E +H I     +S +     +   + P +    Q+  R W+++
Sbjct: 296 VVLADALA------EAVHTIGRVGPLSGDSYRLASRLGMPPWRVQKAQQQARRWSRD 346


>gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ]
 gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ]
          Length = 551

 Score = 44.2 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 51/171 (29%), Gaps = 12/171 (7%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++  + E        I+  A  ++     G    S     ++ ++C     +  + V  
Sbjct: 182 KIVGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCGN--TVAVEDVAT 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + E+ +A   G    A+       A            +  F+ L  I  + 
Sbjct: 240 LVGVVDRRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHFRNLLVIRSV- 298

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
                   +I+   E  +  +++   ++     +   ++  L  +      
Sbjct: 299 ----PKPGEILDLAEAELEELRQQAGEQ-----SAADIQRRLTLLVKAESE 340


>gi|229086962|ref|ZP_04219119.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
 gi|228696338|gb|EEL49166.1| hypothetical protein bcere0022_35350 [Bacillus cereus Rock3-44]
          Length = 435

 Score = 44.2 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 20/187 (10%)

Query: 152 DLIEES--LLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQH 205
            LI++   L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT   
Sbjct: 169 ALIDKEKGLGEYNVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQEVEITLDI 228

Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            ++ +           D H   +     +     +  A+      + +     ++    L
Sbjct: 229 AEECLQKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL 287

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314
                 E I +    +       I+  E+   P  R  +    + +            +D
Sbjct: 288 --IMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 345

Query: 315 HRIHLAR 321
             +H  R
Sbjct: 346 AALHDLR 352


>gi|269926492|ref|YP_003323115.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 550

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               I K+A   +     G    + + L +L+ Y   D  IT +HVK ++       +  
Sbjct: 192 ENIKIQKDALIAIAKASTGSLRDAISILDQLTVY--GDEEITLEHVKQLLGIVGEDVVAN 249

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
            + A I      A+ L        +         +   + L  +    + ++ +  + + 
Sbjct: 250 FVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKAYNQNASKAGIERVS 309


>gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L]
 gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L]
          Length = 428

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 22/184 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-- 258
                      D H   +     +     +  A+      + +       L    ++   
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD-----LQSISRRLLI 281

Query: 259 QLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRI 317
              E I +    +       I+  E+   P  R  +    + +            +D  +
Sbjct: 282 MAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAAL 341

Query: 318 HLAR 321
           H  R
Sbjct: 342 HDLR 345


>gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus
           carboxydivorans Nor1]
 gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus
           carboxydivorans Nor1]
          Length = 351

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   + E       +I+ +A +++  +  G    + + L + +   L+D  +T  HV+
Sbjct: 181 KEIEGRLAEVAAKNNLNITPDALKLIAVHADGGMRDALSILDQCT--ALDDTAVTVTHVR 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++       I  I  A         ++  D  +A       LL    Q  + L      
Sbjct: 239 QLLGLIGHEGIWRITAALANRDSTAVLLALDELVALGKDVRQLLLELAQHLRSLMLFKAA 298

Query: 268 KECSNISF 275
            +   I  
Sbjct: 299 PDVETIDM 306


>gi|15827245|ref|NP_301508.1| hypothetical protein ML0603 [Mycobacterium leprae TN]
 gi|221229723|ref|YP_002503139.1| hypothetical protein MLBr_00603 [Mycobacterium leprae Br4923]
 gi|2398690|emb|CAB16150.1| hypothetical protein MLCL536.07c [Mycobacterium leprae]
 gi|13092794|emb|CAC30111.1| putative lipoprotein [Mycobacterium leprae]
 gi|219932830|emb|CAR70696.1| putative lipoprotein [Mycobacterium leprae Br4923]
          Length = 371

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 80/237 (33%), Gaps = 17/237 (7%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKN---NTL 127
           E+ S SLF+ ++I+++E  +   K    L             ++++ S   +     N L
Sbjct: 104 ELLSPSLFADERIVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANEL 163

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           + +         I+   +      D + + L   +  + + A   LL  +G D     + 
Sbjct: 164 QSLGATVHPCARITKLSERT----DFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASA 219

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A+    + +    P 
Sbjct: 220 CSQLV--ADTAGDVDADAVQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPL 277

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304
             L           E +H I     +S +     +   + P +    Q+  R W+++
Sbjct: 278 VVLADALA------EAVHTIGRVGPLSGDSYRLASRLGMPPWRVQKAQQQARRWSRD 328


>gi|30350173|gb|AAP31481.1| putative DNA polymerase III [Western X phytoplasma]
          Length = 579

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
             +  I+ EA   + A   G    + N L K+SSY +   LI ++ ++ ++       I 
Sbjct: 193 EEKILITDEALTTIAAYSDGSMRDALNLLDKISSYKIN--LIEKKDIEKMLGVISESKIN 250

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           ++    +Q  I   I   +  L   +     L   +  FQ L   H+     N +  +++
Sbjct: 251 QLAEYLVQPDINQMIAFLELILKPNVQISPFLDDLIDFFQKLLLEHVTNPQENTNLFRLL 310

Query: 280 QKTEKNIIP 288
             +++N   
Sbjct: 311 TNSKRNEFF 319


>gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 476

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|227503535|ref|ZP_03933584.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
 gi|227075571|gb|EEI13534.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           accolens ATCC 49725]
          Length = 461

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           +  L     +I+ EA   L+   GGD   S   L+  +    +   IT   + D +    
Sbjct: 205 DRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNVNRAV 264

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                  D H       I +     +  A+      + +      +    +  
Sbjct: 265 VRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLMVH 317


>gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 15/180 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDII--- 210
           E  L     SI  +A +       GD  ++ N L+            IT Q  +D +   
Sbjct: 168 ERGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSANNQPPHITLQDAEDCLQRG 227

Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
                   D H   +     +     +  A+      + +           +  +   E 
Sbjct: 228 AFLSDKDGDMHYDVMSAFQKSIRGSDVDAALHYLGRLIQAGDLPTIARRLLVISY---ED 284

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLARK 322
           I +    +       I+  E+   P  R  L ++ + +         +  ID  +   RK
Sbjct: 285 IGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSAIRSIDAALSDIRK 344


>gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241]
 gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241]
          Length = 431

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|306836214|ref|ZP_07469198.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
 gi|304567935|gb|EFM43516.1| replication-associated recombination protein A [Corynebacterium
           accolens ATCC 49726]
          Length = 461

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           +  L     +I+ EA   L+   GGD   S   L+  +    +   IT   + D +    
Sbjct: 205 DRGLGERDLTITDEALNQLVVLSGGDARRSLTYLEAAAEAVDDGGEITATTITDNVNRAV 264

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                  D H       I +     +  A+      + +      +    +  
Sbjct: 265 VRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLMVH 317


>gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
 gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam]
 gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
          Length = 474

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
 gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
          Length = 428

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 15/180 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED-ILITEQHVKDII--- 210
           E  L     SI  +A +       GD  ++ N L+            IT Q  +D +   
Sbjct: 168 ERGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSANNQPPHITLQDAEDCLQRG 227

Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
                   D H   +     +     +  A+      + +           +  +   E 
Sbjct: 228 AFLSDKDGDMHYDVMSAFQKSIRGSDVDAALHYLGRLIQAGDLPTIARRLLVISY---ED 284

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLARK 322
           I +    +       I+  E+   P  R  L ++ + +         +  ID  +   RK
Sbjct: 285 IGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSAIRSIDAALSDIRK 344


>gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
 gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
          Length = 428

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|15639576|ref|NP_219026.1| hypothetical protein TP0588 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025815|ref|YP_001933587.1| hypothetical protein TPASS_0588 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322883|gb|AAC65563.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018390|gb|ACD71008.1| hypothetical protein TPASS_0588 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 254

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           ++      +  I +EA + LL  +  +  A +    +LS +  +   IT   +  ++  T
Sbjct: 131 VQRFFFQHEMRIEQEAIESLLELVENNTRALKTVCTQLSLFFEKGRRITAHDISSLLVHT 190

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKM-PSHALLHGFLQKFQLLE 262
                  + +A  +  + +++M+ +  L SK      +L G L +   L 
Sbjct: 191 KEETSFTLFDALSKRDLEHSLMILNTLLCSKDVAPVQILAGLLTRSVALR 240


>gi|262200018|ref|YP_003271227.1| DNA polymerase III subunits gamma/tau [Haliangium ochraceum DSM
           14365]
 gi|262083365|gb|ACY19334.1| DNA polymerase III, subunits gamma and tau [Haliangium ochraceum
           DSM 14365]
          Length = 649

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            L++ +       +  +   A  +++   GG    S +   ++ SY      I E  V +
Sbjct: 182 KLIEHLRRIFAAEEIEVDSGAISLIVRESGGSVRDSLSLCDQVISYV-GTSNIGESDVAE 240

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++          +++A  +G   +A+   +   A  +    L    ++  + L  + +  
Sbjct: 241 VLGVADRSLTRTLVSALAEGDAKSALEAVEAADARGVDEVQLARAIVRYLRDLAVMQVAP 300

Query: 269 ECSNI 273
           E   +
Sbjct: 301 EAEGL 305


>gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
 gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97]
 gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
           10379]
 gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
           10379]
          Length = 569

 Score = 43.8 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 89/262 (33%), Gaps = 33/262 (12%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68
            ++ +     +SH  ++FYGS       +   F     +  ++ +    ++ +EI    +
Sbjct: 26  VLKNAIDKDQISH-AYLFYGSRGTGKTSIAKIFAN--EVNGNEIYQKENVDIIEIDAASN 82

Query: 69  TFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +E+              K K+ +I+ +        + L + + +   + I I+    
Sbjct: 83  NGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL---- 138

Query: 121 IKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL--MDLIEE---SLLIGQKSISKEAKQIL 173
                      E       I   C      +L    LI+            I + A + +
Sbjct: 139 --------ATTEIHKIPATILSRCQRFEFKNLSQEQLIDRLKYIAKEENLVIEEAAIEKI 190

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
                G    + + L ++S+Y      IT  H+ ++        I E     +QG +  +
Sbjct: 191 ATLAKGGLRDAISILDQVSNYA---EEITLNHILEVTSSISEDDILEFYRGLLQGDVTKS 247

Query: 234 IMLADFFLASKMPSHALLHGFL 255
           ++  + F+A    +  LL+  +
Sbjct: 248 LLKYNEFVAQAKDTKLLLNDLI 269


>gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNTAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571]
 gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571]
          Length = 613

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 2/127 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +         S+  EA  I+     G    S + L +          +T + 
Sbjct: 210 EAGVLAAHLSRICAKENVSVDAEALSIVARAAEGSVRDSLSLLDQAI--AHGGGAVTGEE 267

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++ +A ++G +  A+        S      +L    +   L+ ++ 
Sbjct: 268 VRRLLGLADKARVIDLFDALMKGDMPRALAEFRDQYDSGADPAVILTDLAEFTHLVTRLK 327

Query: 266 IIKECSN 272
           I+ + ++
Sbjct: 328 IVPDSAS 334


>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
           11548]
          Length = 324

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 45/235 (19%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
           G+I E + +F +   +    PF LV+L+            + + S +  + ++I+ I   
Sbjct: 82  GVIRERVKEFARTAPVG-KAPFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKI 148
           +T   +L      II+ I + +++I+ N + K    + LR IAE                
Sbjct: 131 NTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAEN--------------- 175

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
                           +S +A + +     GD    R  +  L         +TE+ V  
Sbjct: 176 ------------EGVKVSDDALEAIYEFTQGDM---RKAINALQVAASVSREVTEEEVAK 220

Query: 209 IICDTHVLYIEEIINATIQGKIYNA-IMLADFFLASKMPSHALLHGFLQKFQLLE 262
            +       + E++    +G    A   +  F +   +    ++    ++   L+
Sbjct: 221 ALGMVSPRLLREVLQEATKGSFNKALTQIYGFVVDGGVGELEIIRQLHREVLRLD 275


>gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|260462019|ref|ZP_05810264.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
           opportunistum WSM2075]
 gi|259032266|gb|EEW33532.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
           opportunistum WSM2075]
          Length = 597

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 49/156 (31%), Gaps = 3/156 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +   L+  +         S+  +A  ++     G    S + L +          ++ + 
Sbjct: 192 DAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGSVSAEA 249

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +   +        +     A+L    +   L+ ++ 
Sbjct: 250 VRAMLGLADRARIVDLFEHVMKGDVAAVLAEFRAQYDTGADPAAVLTDLAEFNHLVTRLR 309

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            +    +        + ++     +   ++   R W
Sbjct: 310 FVPTAMD-DASLSQDERQRGADFARALSVRVLSRTW 344


>gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987]
 gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|22298675|ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
           elongatus BP-1]
 gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
           elongatus BP-1]
          Length = 603

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 46/167 (27%), Gaps = 13/167 (7%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
             Q  I  EA  ++     G    + + L +LS Y      IT + V  +        + 
Sbjct: 195 KEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLY---PERITVEQVWQLTGAVPEQDLR 251

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
           +++ A  +    + +      L        +L      ++ L     + +  ++      
Sbjct: 252 QLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQRRDLVALTAE 311

Query: 280 QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
                         L E+   W+   +      +       ++    
Sbjct: 312 T-------WQALIALAEA---WSVEEILHAQEHLRTCEGQIKQSNQP 348


>gi|320581211|gb|EFW95432.1| DNA replication factor C [Pichia angusta DL-1]
          Length = 325

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 15/224 (6%)

Query: 24  FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSL 79
            +FYG    G    +I   ++     Y +   ++ LNA +   I        N  ++  +
Sbjct: 42  LLFYGPPGTGKTSTIIALARELYGKNYRN--MVLELNASDDRGIDVVRDQIKNFASTRQI 99

Query: 80  F-SKKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNT-LRKIAEKFTS 136
           F S  K+I+++            L  +I K   N    I +N   K N  L     +F  
Sbjct: 100 FNSGFKLIILDEADAMSNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFR- 158

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
               S   D+   L D ++  +      I+ +A+Q LL    GD   + N LQ  ++   
Sbjct: 159 ---FSPLADSA--LQDRVDYVIKAEGLKIASDARQSLLELSEGDMRRALNVLQACATAVE 213

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
               IT+  V + +       +  +++A +     +A       
Sbjct: 214 SGEEITQDMVYECVGAPRPQSVMTVLDAIMSNDWTDAYATMTKI 257


>gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
           DSM 15470]
 gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
           DSM 15470]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 32/223 (14%)

Query: 56  VVLNALEIQKNISTFWNE-------INSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIK 107
             ++  EI    +   +E       + +  +   KK+ +I+ +    K+  + L + + +
Sbjct: 86  ASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNKKVYIIDEVHMLTKEAFNALLKTLEE 145

Query: 108 NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SC--YPDNKIHLMDLIEESLL---I 160
              + + I+               E     L I   C  Y  ++I + D+ E  L     
Sbjct: 146 PPAHVLFIL------------ATTEPAKIPLTILSRCQRYEFHRISVNDIKEHLLHISQE 193

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKL--SSYCLEDILITEQHVKDIICDTHVLYI 218
              S++ EA  ++     G     R+ L  L   S       ++ + V D++  T    I
Sbjct: 194 SHLSLTPEAAALIAVRAEG---GLRDALSLLDQCSGASAGNELSAEIVYDLLGLTDKEQI 250

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
            ++ +  + GK    + L    L       A+L   L+ F+ +
Sbjct: 251 IDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSI 293


>gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames]
 gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne]
 gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bacillus anthracis str. A2012]
 gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248]
 gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055]
 gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger
           B]
 gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum]
 gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str.
           Australia 94]
 gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames]
 gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne]
 gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|283852529|ref|ZP_06369797.1| DNA polymerase III delta [Desulfovibrio sp. FW1012B]
 gi|283572137|gb|EFC20129.1| DNA polymerase III delta [Desulfovibrio sp. FW1012B]
          Length = 328

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 92/323 (28%), Gaps = 30/323 (9%)

Query: 29  SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
            D  +  E +++            F   V    E       FW+ +   SLF+ ++ +++
Sbjct: 12  PDPEITRERVDRLLAESGQ----QFVKEVFWGDEELSAP--FWSALTVGSLFAGQRAVVV 65

Query: 89  ENL-STEKKVLDCLEEIIIKNICNH--IIIIKSNEIKKNNTLRK---------IAEKFTS 136
               +   ++   L   +     +      ++    +K   + K         +A K   
Sbjct: 66  RRAEACPAELWPKLTSALSGFNASVWPFFCLEGPFDRKGPKIPKALADQPYFKVAGKRKW 125

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
            L +      +  +  L+ +     + +      + L A L  D   + NEL KL     
Sbjct: 126 FLTVP--GLTRRDMGPLLADWAARRRLAFEPGVAEGLAAALPPDLARADNELAKLELALG 183

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGFL 255
           E   I    + ++     +    E ++A   G    +          +         G L
Sbjct: 184 ERTTIERGDLAEVSYHEGMDG-FEFLDALAGGRDPASVWREIGGKQLAGEEMIFPFLGLL 242

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
                   ++  +    I+  +         +  K+  L   L       + E     + 
Sbjct: 243 --------LYEARIMWRIAAGEAGDVRLPPYVLQKKQALARRLGASGLTRLFEAAFAAEA 294

Query: 316 RIHLARKKKYLEKNIIFQTILYI 338
            I    ++       +   +  +
Sbjct: 295 GIKSGTRRPDQAMEYLTAELFRL 317


>gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187]
 gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
 gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187]
 gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKRFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W]
 gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
 gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W]
 gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
           CRIS 5C-B1]
          Length = 610

 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 104/303 (34%), Gaps = 40/303 (13%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           +++  L+A      +NI +  ++        K K+ +I+ +        +   + + +  
Sbjct: 107 YNIFELDAASNNSVENIKSLMDQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPP 166

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + I I+               EK   +  I      Y   ++   D+I           
Sbjct: 167 AHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTTNDIINHLKKVAEKEG 214

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   EA  I+     G    + +   + +S+C     IT   V + +          I+
Sbjct: 215 ITYEDEALNIIAEKADGGMRDALSVFDQAASFC--QGNITYAKVTEDLNVLDTDNYFNIV 272

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           +  +Q K+ +A++L +  +A        ++G     + +    + K+   +   ++ Q+ 
Sbjct: 273 DLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVL---MAKDAQTLPLLEVSQQ- 328

Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTILYIAQ 340
                  +R   +E  +      + + L  ++      R+   K L   I   T++ IAQ
Sbjct: 329 -------QRQKYEEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEI---TLIQIAQ 378

Query: 341 TAC 343
              
Sbjct: 379 ITQ 381


>gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI]
 gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|116249901|ref|YP_765739.1| DNA polymerase III subunits gamma and tau [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254549|emb|CAK05623.1| putative DNA polymerase III [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 625

 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L         ++  + 
Sbjct: 200 ASDLVGLFTTIAAKEGIEAEPDALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +      +L        L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +N      +++T+      K   +    RIW
Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKCVAVTTLSRIW 351


>gi|322368972|ref|ZP_08043539.1| replication factor C large subunit [Haladaptatus paucihalophilus
           DX253]
 gi|320551703|gb|EFW93350.1| replication factor C large subunit [Haladaptatus paucihalophilus
           DX253]
          Length = 488

 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 80  FSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEK 133
            + +++++++         ++     + +++     N  +I+ +NE    +N+LR   E 
Sbjct: 96  TAGRRVVIMDEADNLTHNADRGGSRAITDVVKS--ANQPLILIANEFYDMSNSLRNACET 153

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 I     +   ++  + +           EA + +  N  GD    R+ +  L +
Sbjct: 154 ------IEFRNVSARSIVPALRDICRQENIEYESEALEAIAENDSGD---LRSAVNDLQA 204

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
               +  +T   V     DT     + + +   +     A+  +
Sbjct: 205 VATTNGKLTRDDVVTGERDTTSGIFDFLDDLIKKQDAEGALKAS 248


>gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
 gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
          Length = 430

 Score = 43.8 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|195867641|ref|ZP_03079643.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660698|gb|EDX53953.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 298

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%)

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102
            ++ +    +     +E    SLF+ K I+   +L   KK+              L  ++
Sbjct: 6   KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 64

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159
           ++I     NHI II + E+ K +T +KI E   KF   +    Y     +    +++ L 
Sbjct: 65  DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 122

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                + K     ++     +     NEL KL         +    + + ICD     I 
Sbjct: 123 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 182

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            ++N   Q K    I L +  L  K+    +++              + E  
Sbjct: 183 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 234


>gi|195869133|ref|ZP_02558438.3| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273664|ref|ZP_03206199.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209554502|ref|YP_002284728.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|195659645|gb|EDX53025.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249692|gb|EDY74473.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|209542003|gb|ACI60232.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 305

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%)

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102
            ++ +    +     +E    SLF+ K I+   +L   KK+              L  ++
Sbjct: 13  KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 71

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159
           ++I     NHI II + E+ K +T +KI E   KF   +    Y     +    +++ L 
Sbjct: 72  DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 129

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                + K     ++     +     NEL KL         +    + + ICD     I 
Sbjct: 130 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 189

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            ++N   Q K    I L +  L  K+    +++              + E  
Sbjct: 190 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241


>gi|171920976|ref|ZP_02696329.2| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|185179152|ref|ZP_02555740.2| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188024176|ref|ZP_02570330.2| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|189009913|ref|ZP_02556957.3| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|225551639|ref|ZP_03772585.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|171903002|gb|EDT49291.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|184208934|gb|EDU05977.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188018812|gb|EDU56852.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188997860|gb|EDU66957.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|225379454|gb|EEH01819.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 305

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 20/232 (8%)

Query: 57  VLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--------------LDCLE 102
            ++ +    +     +E    SLF+ K I+   +L   KK+              L  ++
Sbjct: 13  KIDEITTTFDELVKIDE-QQISLFAFKSIVEQSDLFNAKKIYLFKNVNWFESLEQLKNVQ 71

Query: 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLL 159
           ++I     NHI II + E+ K +T +KI E   KF   +    Y     +    +++ L 
Sbjct: 72  DLIDYFFSNHIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELN 129

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                + K     ++     +     NEL KL         +    + + ICD     I 
Sbjct: 130 ERHLHLDKLIVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIF 189

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            ++N   Q K    I L +  L  K+    +++              + E  
Sbjct: 190 SLLNLLYQQKTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241


>gi|326928025|ref|XP_003210185.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like
            [Meleagris gallopavo]
          Length = 1814

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 69/255 (27%), Gaps = 38/255 (14%)

Query: 88   IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147
            +   + E   L               +  ++  + K N  R   E               
Sbjct: 1479 LRRAAGEVAQLSHRVAEAKGKADEAWLQAQA-ALDKANQTRARVEHSNK---------EL 1528

Query: 148  IHLMDLIEESLLIGQKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L+  ++  L         E+ +++ +  L     AS  ++ +L+              
Sbjct: 1529 RELISHVKAFLSQEG--ADPESIEVVASRVLELSLPASPAQIHRLA-------------- 1572

Query: 207  KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            ++I      L   + I     G +  A  L      +K  +  +        Q LE+   
Sbjct: 1573 EEIKARVRSLASVDAILEQTAGDVRQAGQLLQDAQRAKARAEGVRGTAEAVQQALEEAR- 1631

Query: 267  IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN-LVRETLHKI------DHRIHL 319
                +  +  + +  T  +I   +R I    ++       +   + +I         + +
Sbjct: 1632 ---QAQGTAGQALHSTAADIQHSERAIGTMQMQTLGAEQQLAAAMERIGLLEGQTDALKV 1688

Query: 320  ARKKKYLEKNIIFQT 334
             R    L        
Sbjct: 1689 KRANNSLAATRAHDA 1703


>gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102]
 gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102]
          Length = 426

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|303327270|ref|ZP_07357712.1| putative DNA polymerase III, delta subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302863258|gb|EFL86190.1| putative DNA polymerase III, delta subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 337

 Score = 43.4 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120
           +     FW +++   LF   +++L+         V   + + + +          ++ N 
Sbjct: 53  EDPPPRFWEQLSLQGLFGASRVLLVRQAQLWPAAVWKKISQALARPSAQCWPFFCLEVNW 112

Query: 121 IKKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQKSISK 167
            K    +         +  + C  + D            +  +   +++       +   
Sbjct: 113 EKGQPKI------PAHIAKLRCLAFADRQGWIWRHEGLTERGVKRHVQQRARDLGLTFEA 166

Query: 168 EAKQILLANLGGDRIASRNELQKLSS 193
           +A +   A++  D  A  NELQKLS 
Sbjct: 167 DALEQFCASVPPDAQAIENELQKLSL 192


>gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9211]
 gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
           str. MIT 9211]
          Length = 578

 Score = 43.4 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            L++ ++E     +  I KEA  ++     G    +++ L +LS        IT   V D
Sbjct: 186 DLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLL---PQPITVNAVLD 242

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           ++ +     + ++  A  +    N +++    + +      +L G     + L  
Sbjct: 243 LLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVL 297


>gi|289167662|ref|YP_003445931.1| DNA polymerase III, delta subunit [Streptococcus mitis B6]
 gi|288907229|emb|CBJ22064.1| DNA polymerase III, delta subunit [Streptococcus mitis B6]
          Length = 345

 Score = 43.4 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 120/339 (35%), Gaps = 33/339 (9%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTS 78
           + +F G D+G    +  Q  K I     D     F +  +   +++        E+ S  
Sbjct: 18  LILFTGIDQGQFEVMKGQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLP 70

Query: 79  LFSKKKIILIEN----LSTEKKVLD-----CLEEIIIKNICNHIIIIKS-NEIKKNNTLR 128
            F+ +KI+++++     + +K+ L        EE +        ++I +  ++     L 
Sbjct: 71  FFADEKIVILDHFMDITTAKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLV 130

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
           K+ ++             +  L    ++    G    +  + + LL   G       +E+
Sbjct: 131 KLLKRD--AKVFDAVEAKEQELRQYFQKWSQKGGLQFANHSFENLLIKSG----FQFSEI 184

Query: 189 QKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           QK   +      D +I E+ + + I  T    I ++    +  K+  A  L         
Sbjct: 185 QKNLLFLQSYKADSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGE 244

Query: 246 PSHALLHGFLQKFQLLEKIHIIKE---CSNISFEKIIQKTEKNIIPMKRNILQESLRIWN 302
               L+   L +F+   ++ I+ +     +     +     +N+ P +        R  +
Sbjct: 245 DEIKLIAVMLGQFRTFTQVKILSDSGQTESQIASSLGSFLGRNLNPYQIKFALRDSRGLS 304

Query: 303 KNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQT 341
            + +++ +  +    +  +   Y +  +  + +L IA  
Sbjct: 305 LSFLKQAISYLIETDYQIKTGLYEKGFLFEKALLQIASQ 343


>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
 gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
          Length = 601

 Score = 43.4 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+ +A  ++     G    + + L +           T   
Sbjct: 198 EPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 255

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 256 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDL 304


>gi|163740347|ref|ZP_02147741.1| DNA polymerase III subunits gamma and tau [Phaeobacter
           gallaeciensis 2.10]
 gi|161386205|gb|EDQ10580.1| DNA polymerase III subunits gamma and tau [Phaeobacter
           gallaeciensis 2.10]
          Length = 611

 Score = 43.4 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+++        I+++A  ++     G    + + L +           T   
Sbjct: 201 EPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 258

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++I+  ++G   +A+       A      A+L   
Sbjct: 259 VRAMLGLADRGRVLDLIDMILRGDAASALTELSAQYAEGADPLAVLRDL 307


>gi|15902717|ref|NP_358267.1| DNA polymerase III subunit delta [Streptococcus pneumoniae R6]
 gi|116515334|ref|YP_816160.1| DNA polymerase III subunit delta [Streptococcus pneumoniae D39]
 gi|149007645|ref|ZP_01831262.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           SP18-BS74]
 gi|168484830|ref|ZP_02709775.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|307127686|ref|YP_003879717.1| DNA polymerase III subunit delta [Streptococcus pneumoniae 670-6B]
 gi|15458261|gb|AAK99477.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae R6]
 gi|116075910|gb|ABJ53630.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae D39]
 gi|147760800|gb|EDK67771.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           SP18-BS74]
 gi|172041989|gb|EDT50035.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|301793923|emb|CBW36319.1| putative DNA polymerase III delta subunit [Streptococcus pneumoniae
           INV104]
 gi|306484748|gb|ADM91617.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae 670-6B]
 gi|332203918|gb|EGJ17985.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA47368]
 gi|332204773|gb|EGJ18838.1| DNA polymerase III, delta subunit [Streptococcus pneumoniae
           GA47901]
          Length = 345

 Score = 43.4 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 101/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+D+G    + +Q  K I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTDQGQFEVMKSQVLKQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +  +     +II +  ++     L K+
Sbjct: 73  ADEKIVILDYFMDITTAKKRFLTDDELKSFEEYLDNSSPTTKLIIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFENLLIKSG----FQFSEIQK 186

Query: 191 LSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
              +      + +I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKANSVIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|154246111|ref|YP_001417069.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
           autotrophicus Py2]
 gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
           autotrophicus Py2]
          Length = 622

 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 2/130 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +         +I  EA  I+     G    S + L +          +  + 
Sbjct: 223 EAGELAAHLAGICAKEGVTIEPEALAIVARAAEGSVRDSLSLLDQAI--AHGGGAVGAEE 280

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++  A ++G++  A+        +      +L    +   L+ ++ 
Sbjct: 281 VRRLLGLADKGRVIDLFEALMKGEMARALAEFRDQYDAGADPAVILTDLAEFTHLVTRLK 340

Query: 266 IIKECSNISF 275
           I+ + +  + 
Sbjct: 341 IMPDAAQDAA 350


>gi|314969354|gb|EFT13452.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL037PA1]
          Length = 982

 Score = 43.4 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E    G  +++     +++   GG    S + L +L      D  ++ +    +
Sbjct: 314 LVEYLAELCGKGGIAVAPAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507


>gi|312875478|ref|ZP_07735481.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2053A-b]
 gi|325912889|ref|ZP_08175267.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 60-B]
 gi|311088989|gb|EFQ47430.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2053A-b]
 gi|325477882|gb|EGC81016.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 60-B]
          Length = 328

 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      ++ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATLSESSLFSLQ 71

Query: 84  KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLM 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|126664260|ref|ZP_01735252.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
 gi|126623792|gb|EAZ94488.1| putative DNA polymerase III [Flavobacteria bacterium BAL38]
          Length = 357

 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 85/259 (32%), Gaps = 38/259 (14%)

Query: 23  VFIFYGSDKGLIFELINQFKKNI-SITYHDP-----FSLVVLNALEIQ--KNISTFWNEI 74
             +F G              + I    Y DP     F++  L+A       +I +  +++
Sbjct: 41  ALLFTGPRGVGKTTCARILARKINQEGYDDPYEDFSFNVFELDAASNNGVDDIRSIIDQV 100

Query: 75  NSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
                  K K+ +I+ +        +   + + +   + I I+               EK
Sbjct: 101 RIPPQTGKYKVYIIDEVHMLSTSAFNAFLKTLEEPPKHAIFIL------------ATTEK 148

Query: 134 FTSVLAI--SCY---------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
              +  I   C           D K HL ++  E       +   +A  I+     G   
Sbjct: 149 HKIIPTILSRCQIFDFKRITIKDAKNHLAEIANEQ----GVTFEDDALHIIAQKADGAMR 204

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
            + +   ++ SYC     +T Q V + +      Y   I +  ++ KI + ++  +  L+
Sbjct: 205 DALSIFDRVVSYCG--KNLTRQAVTENLNVLDFEYYITITDLILENKIPDLLLAYNDILS 262

Query: 243 SKMPSHALLHGFLQKFQLL 261
                H  + G    F+ L
Sbjct: 263 KGFDGHHFIAGLASHFRDL 281


>gi|254444327|ref|ZP_05057803.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae
           bacterium DG1235]
 gi|198258635|gb|EDY82943.1| DNA polymerase III, subunits gamma and tau [Verrucomicrobiae
           bacterium DG1235]
          Length = 297

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 151 MDLIEESL----LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
            DLI E L            + A + +     G    S++ L ++ ++C     ITE  V
Sbjct: 98  EDLIRERLDLICKTEGIEADEAALKAVARLADGGMRDSQSILDQMIAFCGTK--ITEPDV 155

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
             +       +I+E+  A   G   + + L+D F AS    +  L     + + 
Sbjct: 156 LQVYGLVSGEHIDELARAIATGDHPHLLELSDQFDASGQDFYRALVDLQSRVRQ 209


>gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122]
 gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122]
          Length = 424

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELSVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|51891151|ref|YP_073842.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
           thermophilum IAM 14863]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 59/201 (29%), Gaps = 18/201 (8%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  + E         S EA   +  +  G    + + L ++ +Y   +  IT    
Sbjct: 180 ADEIVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYA-AEGEITLDMT 238

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
             ++    +     +    ++G +  A++  D  + +      L+  +L   + L  + +
Sbjct: 239 LAVLGTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKL 298

Query: 267 IKECSNIS-FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
                 +    + +++             +  L           +  +       R    
Sbjct: 299 EAGAQVLGLPAEALEQMRA----RAEPFAERQL--------IRAIRLLGQAETELRLSPS 346

Query: 326 L----EKNIIFQTILYIAQTA 342
                E  +I  T L+    A
Sbjct: 347 PRLLVEVALIRLTGLFTGAAA 367


>gi|93005394|ref|YP_579831.1| DNA polymerase III, delta subunit [Psychrobacter cryohalolentis K5]
 gi|92393072|gb|ABE74347.1| DNA polymerase III, delta subunit [Psychrobacter cryohalolentis K5]
          Length = 358

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 97/298 (32%), Gaps = 36/298 (12%)

Query: 7   HKFIQKSTKNLFLSHFV---FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
             FIQ   K    S  V   ++ +G +  L   LI+  + +        +++  +  + +
Sbjct: 3   DTFIQAYPKLQRSSVAVAGLWLAHGDEPLLSQWLIDALRPHWRAQN---YAIKRIELISV 59

Query: 64  QKNISTFWNEINSTSLFSK-KKIILIENLSTEKKVLDCLEEIIIKNICNHI---IIIKSN 119
           +        E+ S SLF     +I+  N   +K V+  LE              ++  + 
Sbjct: 60  KSWQEVLS-ELGSQSLFDDASALIVTGNHKPDKAVITELERFAQDAQAGSHSHSLLWLTP 118

Query: 120 EIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
           +  K     K           I C   N+     L++         +S+EA Q+L+++  
Sbjct: 119 KQDKRAQSSKWFTPFAQYGHVIDCNLYNEQQRQQLLQIQAQQFGLKLSQEAWQLLMSHTE 178

Query: 179 GDRIASRNELQKLS------SYCLEDILI---------------TEQHVKDIICDTHVLY 217
              +++   L +LS           D  I                   ++  +       
Sbjct: 179 HHLLSAYQTLWRLSYLFAPQLMANNDAAIQETTNSSPHLSQVALDINDLQAALVSDAQFS 238

Query: 218 IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
           + ++ +A + G       +     A+  P+  +L    +  + + ++    +  +   
Sbjct: 239 VFDLSDAMLAGNSAQVAKIIFQLKATDEPTTLVLWAISKDMRQIMQL---MDGQDPQA 293


>gi|222147106|ref|YP_002548063.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
 gi|221734096|gb|ACM35059.1| DNA polymerase III subunits gamma and tau [Agrobacterium vitis S4]
          Length = 631

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 4/138 (2%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L    L         EA  ++     G   ++R+ L  L          +    
Sbjct: 203 AGDLVGLFSTILSKENIEAEDEALAMIARAAEG---SARDGLSLLDQAIAHGAGRVEADA 259

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++    + G +  A+   +    +      +L        L+ ++ 
Sbjct: 260 VRSMLGLADRARVVDLFGHIVLGDVAAALSEFNSQYEAGASPSVVLTDLADFTHLVTRLK 319

Query: 266 IIKECSNISFEKIIQKTE 283
            +   +N      +++  
Sbjct: 320 YVPNGANDPSLSEVERVR 337


>gi|217969820|ref|YP_002355054.1| DNA polymerase III subunits gamma/tau [Thauera sp. MZ1T]
 gi|217507147|gb|ACK54158.1| DNA polymerase III, subunits gamma and tau [Thauera sp. MZ1T]
          Length = 716

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
            H++D +   L   + +    A + L     G    + + L +          + E+ V 
Sbjct: 181 GHIVDHLTRILQAEEVAFEPGALRHLAKAASGSMRDALSLLDQAI--AHGAGRVEEEQVS 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++      ++  +++A   G +   + +AD   A  +   A L         +      
Sbjct: 239 HMLGTVGDDHLYAVLDALAAGDVPALLAVADGMEARSLSFDAALQALATLVHRVALAQYA 298


>gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 480

 Score = 43.0 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 73/182 (40%), Gaps = 29/182 (15%)

Query: 21  HFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEI 74
               + YG        L+  + N+FK          + L+ +NA + +   +I       
Sbjct: 44  RKALLLYGPPGCGKTSLVEAIANEFK----------YELIEMNASDFRRRSDIERIAIRA 93

Query: 75  NST-SLFSKKKIILIEN------LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTL 127
           +S  S+F K + I++ +         ++  ++ +++++ K   +  +I+ +N    + +L
Sbjct: 94  SSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEK--TSVPVIMTANN-PYDPSL 150

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R + E       +     +K  +  ++ +          +EA   ++    GD  A+ N+
Sbjct: 151 RVLRE---IAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAIND 207

Query: 188 LQ 189
           LQ
Sbjct: 208 LQ 209


>gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
 gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
          Length = 588

 Score = 43.0 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 42/138 (30%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+          I+ +A  ++     G    + + L +           T   
Sbjct: 190 EPEVMIALLRRIADREGAQITDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++ +  ++G    A+       A      A+L    +    +  + 
Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDLAEITHWISVVK 307

Query: 266 IIKECSNISFEKIIQKTE 283
           I  + +N       ++  
Sbjct: 308 ITPDAANDPTIGPDERAR 325


>gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 420

 Score = 43.0 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +I+ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 159 EKGLGEYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 218

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335

Query: 320 AR 321
            R
Sbjct: 336 LR 337


>gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1]
 gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1]
          Length = 599

 Score = 43.0 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/187 (9%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155
              + L + + +   + + I+ + E+ K           +              +   + 
Sbjct: 134 AAFNALLKTLEEPPPHALFILATTEVHKVPAT-----ILSRCQRFVFNRHTVASIAAHLR 188

Query: 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215
                   ++     + +     G    + + L +L +Y      I+ + V++++    +
Sbjct: 189 SIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAY--GGGTISLEQVRNLLGAGEM 246

Query: 216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS--NI 273
             +  + +A I G +  A+ +     A+           +++ + +  +    + S  ++
Sbjct: 247 QEVTALADALIAGDLPGALQVIANVAAAGADLRQFTRDLVERLRAVMLLRAGADRSLLDV 306

Query: 274 SFEKIIQ 280
           + E+ +Q
Sbjct: 307 AEEEAVQ 313


>gi|190889795|ref|YP_001976337.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
           polymerase) [Rhizobium etli CIAT 652]
 gi|190695074|gb|ACE89159.1| DNA polymerase III, tau subunit protein (DNA-directed DNA
           polymerase) [Rhizobium etli CIAT 652]
          Length = 623

 Score = 43.0 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L         ++  + 
Sbjct: 200 ASDLVGLFTTIAAKEGIEAEADALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +      +L        L+ ++ 
Sbjct: 257 VRGMLGLADRARIVDLFQHIVKGDVAGALAEFQSQYEAGANPVVVLTDLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTE 283
            + + +N      I++T+
Sbjct: 317 YVPDAANDPSLSEIERTK 334


>gi|284165192|ref|YP_003403471.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284014847|gb|ADB60798.1| AAA ATPase central domain protein [Haloterrigena turkmenica DSM
           5511]
          Length = 497

 Score = 43.0 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 19/208 (9%)

Query: 39  NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSLFSK---KKIILIENLSTE 94
                 ++     P   +  +       I     E + S +L      +++++++     
Sbjct: 50  TSAAHALAGDMGWPVMELNASDSRGADVIERIAGEASKSGTLTGGEAGRRLVILDEADNF 109

Query: 95  KKVLD---CLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTSVLAISCYPDNKIHL 150
               D     E   +    N  I++ +NE    + +LR   E       I     +K  +
Sbjct: 110 HGNADYGGSAEVTRVVKDANQPIVLVANEFYDMSQSLRNSCET------IEFRDVSKRSI 163

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
           + ++ +          +EA + +  +  GD    R+ +  L +   E   +T + V    
Sbjct: 164 VPVLRDICRREDVEFEEEALEKIAEDTSGD---LRSAVNDLQAVAEEAERLTVEDVVTGQ 220

Query: 211 CDTHVLYIEEIINATI-QGKIYNAIMLA 237
            DT    I + ++A I +     A+  +
Sbjct: 221 RDTTE-GIFDFLDALIKEEDAEGALRAS 247


>gi|294791539|ref|ZP_06756696.1| putative DNA polymerase III, delta subunit [Scardovia inopinata
           F0304]
 gi|294458010|gb|EFG26364.1| putative DNA polymerase III, delta subunit [Scardovia inopinata
           F0304]
          Length = 339

 Score = 43.0 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 116/339 (34%), Gaps = 32/339 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
           FV I  G D  L  + + +  K ++        ++ L+A          +++  S SL S
Sbjct: 19  FVHIVSGEDDYLSGQRVQEL-KTVAFRTLPEAEIIELDAATCTAFD---FDQAVSPSLLS 74

Query: 82  KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTS 136
              I+L+ +           +++  +    ++    I+I++ N   K + + K A+K  +
Sbjct: 75  DASIVLMSHGENMDEEVGTALVEYCQRFRKESNPVSIVIVRHNGSTKGSGIIKRAQKAGA 134

Query: 137 VLAISCYPDNKIHLMD------LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           VL      D    L         +       ++ I+ +A Q+++  L           ++
Sbjct: 135 VL------DPIESLKKPDSRKNFVLHCCEKRKRRITPDAAQLIVDVLTDKTGEIAALCEQ 188

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L         I+   V+  +     +    + +  I G +  A++     LA  +   A+
Sbjct: 189 LCD-DFPQDPISRNQVETYLSADPRVTGFNVADRAISGNVAQAVLGLRSALAQGVDPLAI 247

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
           +           KI  + + S +    I     +      RN  ++ +R W    +R+ +
Sbjct: 248 IGAIA------MKIRAMAKASAVDRGTITPAEARMAPWQLRNA-RKDVRGWTSQGLRKCI 300

Query: 311 HKIDHRIHLARKK---KYLEKNIIFQTILYIAQTACKNN 346
                     +           I+ +T+    + +  + 
Sbjct: 301 QTAAWADEQCKSSGTDPLYAMEILVETLAKKGRISASDR 339


>gi|118590526|ref|ZP_01547928.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
           12614]
 gi|118436989|gb|EAV43628.1| DNA polymerase III subunits gamma and tau [Stappia aggregata IAM
           12614]
          Length = 640

 Score = 43.0 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 4/139 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204
           ++  L+ L+          IS EA  +L+A  G    ++R+ L  L          I  +
Sbjct: 218 DQSKLIGLLRRISDAEGIQISDEAL-MLIARAGE--GSARDSLSLLDQAMAHGAGAIEAE 274

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            ++ ++       + ++    + G+I +A+               +L        L+ ++
Sbjct: 275 DLRQMLGLADRARVIDLFGHIMAGRIEDALGELQAQYEVGADPAIVLTDLADFTHLVTRM 334

Query: 265 HIIKECSNISFEKIIQKTE 283
            +  + ++ +     ++  
Sbjct: 335 KVAPKSADEASVTEAERAR 353


>gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 509

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 78/183 (42%), Gaps = 18/183 (9%)

Query: 53  FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104
           F ++ LNA + + + +      +   S+S+F KK +I+++ +       +   +  L +I
Sbjct: 65  FEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSELIKI 124

Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
           I K    + II+ +N+    + +R +      V  I   P +   +  ++++        
Sbjct: 125 IKK--AKNPIILTANDAYATS-IRSLL---PYVEIIQLNPVHTNSIYKVLKKIAQKEGLD 178

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +  +  +++  +  GD  ++ N+L+ L+        ++ + V+ +        I + +  
Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYETVQKLPDRKREANIFDALRV 234

Query: 225 TIQ 227
            ++
Sbjct: 235 ILK 237


>gi|256827873|ref|YP_003156601.1| DNA polymerase III, delta [Desulfomicrobium baculatum DSM 4028]
 gi|256577049|gb|ACU88185.1| DNA polymerase III, delta [Desulfomicrobium baculatum DSM 4028]
          Length = 317

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   ++        + +   K+IL  +L    IA RNEL+K+      +  I  +H+ 
Sbjct: 133 ATIGQELDRFAARHGLTYAHGVKKILAESLPLSTIALRNELEKILLLAGPEKSIQPEHLA 192

Query: 208 DIICDTHVLYIEEIINA--TIQGKIYNAIMLA-DFFLASKMPSHALLHGFLQKFQLLEKI 264
            +  +     +   + +  T  G+      L  D  +A       +    L++ + L ++
Sbjct: 193 ALDAEE-AFDLFAFLRSLQTPAGRQKAWDRLLNDPAMAGGDMVFPVSSLMLREARQLWQL 251

Query: 265 HIIKECS 271
              ++  
Sbjct: 252 LHGEDGK 258


>gi|315635660|ref|ZP_07890923.1| DNA polymerase III [Arcobacter butzleri JV22]
 gi|315479957|gb|EFU70627.1| DNA polymerase III [Arcobacter butzleri JV22]
          Length = 326

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 104/323 (32%), Gaps = 25/323 (7%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
              ++FYG    L+ +      +           +  L   E     +   +++  +SLF
Sbjct: 16  FKTYMFYGQSTFLVEQYSLSIARMFGQDD----EIEKLYFEEYDFKYAK--DKLLQSSLF 69

Query: 81  SKKKIILIENLSTEKKV-LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF----T 135
           S   I+ I+      K  LD L E    N  + ++I    +    +   K  E      T
Sbjct: 70  SSNNILFIKIDKKIPKKELDVLIEACNANPDSTLVIACMGD----SDF-KTMETSFSLKT 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           +   +  +    +     +E    + Q      A   L      D     N+L+KL+   
Sbjct: 125 NSACVRFFQPTDLEATKFLEYEAKMLQIQYEVSALNHLYFMHKNDLALCVNDLKKLAIL- 183

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D LIT   V         +  E+ +   + GK  ++       L   M    LL    
Sbjct: 184 --DELITINIVDTHCFGIGSVNFEDFLYDLLAGKDISSD--LSSILEEGMNEVFLLTQVT 239

Query: 256 QKFQLLEKI-HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
              Q L  I    +     + ++I+       I  K++ L  +++     + +  L  + 
Sbjct: 240 SFIQQLFMISSYARTLGQPNPKEILGYIPPKNIWEKKSKLAINIK---PEVFQNMLEYLL 296

Query: 315 HRIHLARKKKYLEKNIIFQTILY 337
                 +  K   +N+  Q  L 
Sbjct: 297 DIELDFKTSKVENQNLYLQATLR 319


>gi|296438351|gb|ADH20504.1| hypothetical protein E11023_00250 [Chlamydia trachomatis E/11023]
          Length = 314

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L  F ++   
Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRFLVSDMG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               A+L+    ++  L  +  + E S     +I     + 
Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280


>gi|218888172|ref|YP_002437493.1| hypothetical protein DvMF_3088 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759126|gb|ACL10025.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 383

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 90/296 (30%), Gaps = 37/296 (12%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTE-----KKVLDCLEEIIIKNICNHIIIIKSNEI 121
              FW  +    LF+  + +++ N         K++   L +     +    + ++    
Sbjct: 69  PPAFWEHLTLQGLFATPRALVVRNAQNLPAETWKRISAALAK--PNPLAWPFLCLEVPFD 126

Query: 122 KKNNTLRKIAEKFTSVLAISC--YPD-----------NKIHLMDLIEESLLIGQKSISKE 168
           K    +         +  + C  + D           ++  +   + +         +  
Sbjct: 127 KGQPKV------PAHIAKLRCLDFADSQKWIWRSPGLDERGVATFVRQHAASRAIRFAPG 180

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A + + A L  D  A   EL+KLS     D  +T   +  ++     + I   + A   G
Sbjct: 181 ALEAVCAALPPDATAIATELEKLSL-AAGDGEVTPA-MAALVDHAADIDIFAFMRALQAG 238

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
                + +    L  ++   ++L  FL    LL +  I+ +       ++          
Sbjct: 239 NAP--MTVWRQVLRDRLGGDSMLFPFLG--MLLRETRILWQLLAGEPVRLPPSVLPP--- 291

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344
             +  L   L       + +   + +  I    +       ++   +  +   + +
Sbjct: 292 --KQQLARQLGHAGLARIWDLALEAELGIKSGERSPEQAMEMLVAGLFTLFARSRR 345


>gi|222097843|ref|YP_002531900.1| ATPase, AAA family [Bacillus cereus Q1]
 gi|221241901|gb|ACM14611.1| ATPase, AAA family [Bacillus cereus Q1]
          Length = 340

 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 79  EKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 138

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 139 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 195

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 196 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 255

Query: 320 AR 321
            R
Sbjct: 256 LR 257


>gi|329921322|ref|ZP_08277760.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 1401G]
 gi|328934614|gb|EGG31118.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN 1401G]
          Length = 328

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      ++ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATLSESSLFSLQ 71

Query: 84  KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 424

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDEEKGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|315653474|ref|ZP_07906395.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners
           ATCC 55195]
 gi|315489165|gb|EFU78806.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners
           ATCC 55195]
          Length = 328

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      I+ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71

Query: 84  KIILIENL--------STEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPVFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLM 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|296130068|ref|YP_003637318.1| DNA polymerase III, delta subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021883|gb|ADG75119.1| DNA polymerase III, delta subunit [Cellulomonas flavigena DSM
           20109]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 101/308 (32%), Gaps = 20/308 (6%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIEN--LS 92
            E I    +           +  ++A        T    + S SLF++ K++L+E    +
Sbjct: 15  CERIVAQARAADPDL----EVTRVDAATYAAGDLTV---LTSPSLFAEAKVVLVEGVERA 67

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLM 151
            +  +LD    +   +    +++  +   +    L     K   V  ++C P  +     
Sbjct: 68  GDALLLDAEAYLTAPDPGVVVVLRHAGGQRGKRLLDAA--KRAQVPTVACEPVKSDADKA 125

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             + E L    +     A + L+  +G D         +L        LI E+ V+    
Sbjct: 126 AFVSEELTRAGRRADARAVRALVDAVGSDLRELAAACAQLV--ADTTGLIGEEAVQRYHG 183

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
                   ++ +A + G    A+ L    LA+ +    ++           ++  + +  
Sbjct: 184 GRVEATGFQVADAAVAGDAGRAVALLRHALATGLDPVPIVAAVAA------RLRTLAKVG 237

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNII 331
            +         E  + P + +   + LR W    +   +  +       + +    +  I
Sbjct: 238 AVRGRGAAAARELGMAPWQVDRATQDLRRWTPEGLAVAISAVAQADAEVKGEGRDPRFAI 297

Query: 332 FQTILYIA 339
            + +L +A
Sbjct: 298 ERAVLRVA 305


>gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
 gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  +++++       +    ++A + L  +  GD    R  +  L  +      +T   +
Sbjct: 178 EDDVVEVLRRICDSEKIKCEEDALRALARSSDGD---LRAAINDLQLFAGGKKTLTVDDI 234

Query: 207 KDIICDTHVLYIEEIINATIQGK 229
           K +      L + E+++   +  
Sbjct: 235 KRVGERNPQLSMFEVLDRVFRAN 257


>gi|319405116|emb|CBI78722.1| DNA polymerase III subunit tau [Bartonella sp. AR 15-3]
          Length = 633

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 69/204 (33%), Gaps = 9/204 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+  + +   + +     +A  ++     G    + + L +  +Y   +  +    
Sbjct: 194 EATVLLTHLRQIAQLEKVEAQDQALFMIAHAAEGSVRDALSILDQAIAY--GNGKVDAIA 251

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++  T    I ++  + ++G I NA+        +     A+L        L+ ++ 
Sbjct: 252 VRVMLGLTDQSRIIDLFESIMKGNIVNALYELRNQYNAGADPFAILTELADFNHLITRLR 311

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319
           +  E          +++  ++   ++  ++   R W         V +  H I    + L
Sbjct: 312 LTPEIIESLSLTEEERSR-SLNFSQKLSIRVLSRSWQMLLKGLQEVSQASHPIQAAEMLL 370

Query: 320 ARKKKYLEKNIIFQTILYIAQTAC 343
            R     +   + + +  + Q   
Sbjct: 371 IRLAHVADLPTLDEALTKLTQNKK 394


>gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
 gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 24/185 (12%)

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L  + E+   V  +    D+   L              I ++A +       GD  ++ N
Sbjct: 148 LYPLNEEDIKVALMRAIEDDSRGLASY--------HPHIDEDAIEYFSTQSQGDVRSALN 199

Query: 187 ELQKLSSYC---LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233
            L+           +  +T    +D +           D H   +     +     +  A
Sbjct: 200 ALELAVLSADEDNGERHVTLTDAQDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAA 259

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +      +A+      +    +  +   E I +    +       IQ  E+   P  R  
Sbjct: 260 LHYLARLIAAGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIQAAERLGFPEARIP 316

Query: 294 LQESL 298
           L +++
Sbjct: 317 LSQAV 321


>gi|222084336|ref|YP_002542865.1| DNA polymerase III [Agrobacterium radiobacter K84]
 gi|221721784|gb|ACM24940.1| DNA polymerase III [Agrobacterium radiobacter K84]
          Length = 625

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              EA  ++     G   ++R+ L  L         ++    
Sbjct: 200 ASDLVGLFTTIAGKEGIEAEPEALAMIARAAEG---SARDGLSLLDQAIAHGSGVVVADA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++ +  I+G +  A+   +    +      +L        L+ ++ 
Sbjct: 257 VRSMLGLADRARIVDLFHHIIKGDVAAALAEFNSQYEAGANPVVVLADLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +N      +++ +      +   +    RIW
Sbjct: 317 YVPDAANDPSLSEVERNKAA-EFAQGVAVTTLSRIW 351


>gi|269837957|ref|YP_003320185.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
           thermophilus DSM 20745]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLEDILITEQH 205
            +++ +             EA +++     G    +   L++L+ +       ++IT   
Sbjct: 197 DVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKLVITADA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ +   +    +  +++A  +      + +      S    H L    +   + L  I 
Sbjct: 257 VRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLRTLLLIR 316

Query: 266 I 266
            
Sbjct: 317 A 317


>gi|229105033|ref|ZP_04235687.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
 gi|228678410|gb|EEL32633.1| hypothetical protein bcere0019_41690 [Bacillus cereus Rock3-28]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|184199929|ref|YP_001854136.1| DNA polymerase III tau subunit [Kocuria rhizophila DC2201]
 gi|183580159|dbj|BAG28630.1| DNA polymerase III gamma/tau subunit [Kocuria rhizophila DC2201]
          Length = 1264

 Score = 42.7 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 84/242 (34%), Gaps = 17/242 (7%)

Query: 35  FELINQFKKNISITYHDPFSLVVLNALEIQK-NISTFWNEINSTSLFSKKKIILIENLST 93
            E      ++ + +      ++ ++A      + +    E  + +    +  I I + + 
Sbjct: 75  CESCRDLARDGAGSLD----VIEMDAASHGGVDHARDLRERATFAPVRDRYKIFIIDEAH 130

Query: 94  --EKKVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTSVLAISCYPDNKIHL 150
              ++  + L +I+ +   +   I  + E  K   T+R     +   L           L
Sbjct: 131 MVTREGFNALLKIVEEPPEHVKFIFATTEPSKVLTTIRSRTHHYPFRLVPP------EPL 184

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDI 209
           M  +E+       S       +++   GG    S + L +L      D   I+      +
Sbjct: 185 MRYLEQLCQEEGVSTEPGVLSLVVRAGGGSVRDSLSVLDQL--MAGSDERGISYDLAVAL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  TH   ++++++A   G         D  + +       +   L++F+ L  ++ + +
Sbjct: 243 LGYTHAALLDDVVDAFAAGDAATVFSSVDRVVQTGQDPRRFVEDLLERFRDLVVVNAVPD 302

Query: 270 CS 271
            +
Sbjct: 303 SA 304


>gi|303245836|ref|ZP_07332118.1| DNA polymerase III delta [Desulfovibrio fructosovorans JJ]
 gi|302492619|gb|EFL52487.1| DNA polymerase III delta [Desulfovibrio fructosovorans JJ]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 98/333 (29%), Gaps = 32/333 (9%)

Query: 29  SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
            D  +I + +++            F   V    E   +   FW+ +   SLFS ++ +++
Sbjct: 12  PDPEIIRDRVDRLLAEQGSG----FDKAVFWGDEELGDP--FWSALTVASLFSGRRALVL 65

Query: 89  ENLSTEKKVLDCLEEIIIKNICNH---IIIIKS------NEIKKNNTLR---KIAEKFTS 136
                            ++   +       ++        +  K    +   K+AEK   
Sbjct: 66  RRAEACPAEFWPKLAAALRGFNDAVWPFFCLEGAFDRKGPKYPKGLATQPYFKVAEKRGW 125

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
           +         +  +  L+ +     + +      + L A L  D   + NEL KL     
Sbjct: 126 LFVSP--GLTRRDMGPLLADWAGGRKLAFEPGVAEALAAALPLDLARADNELAKLELTLG 183

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAI--MLADFFLASKMPSHALLHGF 254
           +  ++T      ++     +     ++A   G+   A+   + +  LA +      L   
Sbjct: 184 DRSVLTMDDA-ALVGGHEGMDGFAFLDALASGRDPAAVWREIGEKQLAGEDMVFPFLGLL 242

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKID 314
           L         +  +    I+  +       + +  K+  +   L       + E     +
Sbjct: 243 L---------YEARIMWRIAAGEAGDVRLPSFVMQKKQAMARRLGAAGLTRIFEAAFAAE 293

Query: 315 HRIHLARKKKYLEKNIIFQTILYIAQTACKNNN 347
             I    ++       +   +  +     +   
Sbjct: 294 SGIKSGARRPDQAMEYLTAELFRLFGGNARQTR 326


>gi|229013617|ref|ZP_04170748.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
 gi|228747676|gb|EEL97548.1| hypothetical protein bmyco0001_40250 [Bacillus mycoides DSM 2048]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|229135222|ref|ZP_04264021.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
 gi|229169142|ref|ZP_04296857.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228614370|gb|EEK71480.1| hypothetical protein bcere0007_40940 [Bacillus cereus AH621]
 gi|228648264|gb|EEL04300.1| hypothetical protein bcere0014_41240 [Bacillus cereus BDRD-ST196]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAVEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|225550964|ref|ZP_03771913.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225380118|gb|EEH02480.1| DNA polymerase III, delta subunit superfamily [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 305

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 9/223 (4%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKV--LDCLEEIIIKNICN 111
            LV ++  +I         E +   LF+ KKI L +N++  + +  L  ++++I     N
Sbjct: 23  ELVKIDDQQISLFAFKSIVEQS--DLFNAKKIYLFKNVNWFESLEQLKNVQDLIDYFFSN 80

Query: 112 HIIIIKSNEIKKNNTLRKIAE---KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
           HI II + E+ K +T +KI E   KF   +    Y     +    +++ L      + K 
Sbjct: 81  HIPIIITTELTKISTAKKIQEIIAKFGHQITFISYS--NKNAATFLKDELNERHLHLDKL 138

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
               ++     +     NEL KL         +    + + ICD     I  ++N   Q 
Sbjct: 139 IVATIIQKTNFNINYLNNELNKLELINDSLKNVNLVDIDNFICDYGDYQIFSLLNLLYQQ 198

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           K    I L +  L  K+    +++              + E  
Sbjct: 199 KTKELINLINKMLIDKIDEVTIINMMATMMSTYYLTKYLDEKK 241


>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 804

 Score = 42.7 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 101/303 (33%), Gaps = 28/303 (9%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLSTEKKVL-DCLEEIIIKNI 109
           ++ LEI    +   +EI +         +  +KK+ +I+          + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   ++        ++   
Sbjct: 148 DHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLQYVADKEGFALEDN 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A +++  +  G    + + L +          IT   V+++I      +I + ++A   G
Sbjct: 202 AARLIAVHADGGLRDALSILDQCVGMA--SGEITPAVVEELIGLVSKDWIIKFLSALHNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
                +      L+       ++    Q  + L    +  +   +               
Sbjct: 260 DGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEELKVYDSF--------- 310

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
            +   L+++ +      + + + ++   +  A++       I    ++  A  +  +++ 
Sbjct: 311 -RTEFLEQA-KDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVLCAGVSKAHDDV 368

Query: 349 YKR 351
             R
Sbjct: 369 EDR 371


>gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 584

 Score = 42.7 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        IS +A  ++     G    + + L +           T   
Sbjct: 190 EPEVMIGLLRKIATAEGAEISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLMDMILRGDAAGALTELGAQYAEGADPLAVLRDL 296


>gi|307704569|ref|ZP_07641474.1| DNA polymerase III, delta subunit [Streptococcus mitis SK597]
 gi|307621866|gb|EFO00898.1| DNA polymerase III, delta subunit [Streptococcus mitis SK597]
          Length = 345

 Score = 42.7 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +F G+++G    + +Q  + I     D     F +  +   +++        E+ S   F
Sbjct: 20  LFTGTNQGQFEVMKSQVLRQIGYDSADLNFAYFDMKEVVYKDVEL-------ELVSLPFF 72

Query: 81  SKKKIILIE---NLSTEKKV------LDCLEEIIIKNICNHIIIIKS-NEIKKNNTLRKI 130
           + +KI++++   +++T KK       L   EE +        ++I +  ++     L K+
Sbjct: 73  ADEKIVILDHFVDMTTSKKRFLTDDELKSFEEYLDNPSPTTKLLIFAEGKLDSKRRLVKL 132

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
            ++             +  L    ++         +  + + LL   G       +E+QK
Sbjct: 133 LKRD--AKVFDAVEAKEQELRQYFQKWSQKQGLQFANHSFENLLVKSG----FQFSEIQK 186

Query: 191 --LSSYCLEDIL-ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             L     ++   I E+ + + I  T    I ++    +  K+  A  L           
Sbjct: 187 NLLFLQSYKEGSIIEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDE 246

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
             L+   L +F+   ++ I+ E S  +  +I     
Sbjct: 247 IKLIAVMLGQFRTFTQVKILAE-SGQTESQIASSLG 281


>gi|220934248|ref|YP_002513147.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995558|gb|ACL72160.1| DNA polymerase III, subunits gamma and tau [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 553

 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +++ L          A   L     G    + + L +  +Y      + +  V++++   
Sbjct: 187 LKKVLEQEGVDFDPPAIMRLARAASGSMRDALSLLDQAIAY--GSGALRDDDVREMLGAI 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE---- 269
              ++E ++ A   G     +   D         +A+L   +     +     + E    
Sbjct: 245 SQDHLERMLQALAAGDGPALMGAVDDLAQRAPDYNAILGELVSLLHQVALAQQVPEALDE 304

Query: 270 -CSNISFEKIIQKTEKN 285
              +++  + + ++   
Sbjct: 305 GAVDVAAVQAMARSLAP 321


>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
 gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
           DSS-3]
          Length = 583

 Score = 42.7 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+          I+++A  +++    G    + + L +           + + 
Sbjct: 190 EPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAI--SHGAGETSAEQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDL 296


>gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 24/185 (12%)

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           L  + E+   V  +    D+   L              I ++A +       GD  ++ N
Sbjct: 148 LYPLNEEDIKVALMRAIEDDSRGLASY--------HPHIDEDAIEYFSTQSQGDVRSALN 199

Query: 187 ELQKLSSYC---LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233
            L+           +  +T    +D +           D H   +     +     +  A
Sbjct: 200 ALELAVLSADEDNGERHVTLTDAQDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAA 259

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +      +A+      +    +  +   E I +    +       IQ  E+   P  R  
Sbjct: 260 LHYLARLIAAGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIQAAERLGFPEARIP 316

Query: 294 LQESL 298
           L +++
Sbjct: 317 LSQAV 321


>gi|289580410|ref|YP_003478876.1| ATPase AAA [Natrialba magadii ATCC 43099]
 gi|289529963|gb|ADD04314.1| AAA ATPase central domain protein [Natrialba magadii ATCC 43099]
          Length = 514

 Score = 42.7 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 21/209 (10%)

Query: 39  NQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSLFSK---KKIILIENLSTE 94
                 ++     P   +  +       I     E   S +L      +++++++     
Sbjct: 51  TSAAHALANDLGWPVMELNASDSRGADVIERIAGEAAKSGTLTGGESGRRLVILDEADNF 110

Query: 95  KKVLD-----CLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTSVLAISCYPDNKI 148
               D      +  ++     N  I++ +NE    + +LR   E       I     +K 
Sbjct: 111 HGNADYGGSREVTRVVKS--ANQPIVLVANEFYDMSQSLRNACET------IEFRDVSKR 162

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++ ++ +           +A Q +  +  GD    R+ +  L +   E   +T   V  
Sbjct: 163 SIVPVLRDICRREDIEFEDDALQKIAEDTSGD---LRSAVNDLQAVAEEAERLTVDDVVT 219

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLA 237
              DT     + +     +     A+  +
Sbjct: 220 GDRDTTEGIFDFLDTLIKEEDAEGALKAS 248


>gi|254500517|ref|ZP_05112668.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
           alexandrii DFL-11]
 gi|222436588|gb|EEE43267.1| DNA polymerase III, subunits gamma and tau, putative [Labrenzia
           alexandrii DFL-11]
          Length = 654

 Score = 42.7 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 62/172 (36%), Gaps = 7/172 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204
           ++  L+ L+          IS EA  +L+A  G    ++R+ L  L          I   
Sbjct: 223 DQSKLIGLLRRISDAEGIQISDEAL-MLIARAGE--GSARDSLSLLDQAMAHGSGAIEAD 279

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            ++ ++       + ++    + G+I +A+               +L        L+ ++
Sbjct: 280 DLRQMLGLADRARVIDLFGHLMAGRIEDALAELQAQYEIGADPAIILTDLADFTHLVTRM 339

Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            +  + ++ +     ++        ++  ++   R+W   ++ + + ++   
Sbjct: 340 KVAPKSADEASVTEAERAR-GQEFAEKISVRLLSRVW--QILLKGVQEVQAA 388


>gi|218899568|ref|YP_002447979.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228902927|ref|ZP_04067068.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
 gi|218540581|gb|ACK92975.1| ATPase, AAA family [Bacillus cereus G9842]
 gi|228856711|gb|EEN01230.1| hypothetical protein bthur0014_40950 [Bacillus thuringiensis IBL
           4222]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +I+ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|228999186|ref|ZP_04158768.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
 gi|229006734|ref|ZP_04164368.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228754595|gb|EEM04006.1| hypothetical protein bmyco0002_36360 [Bacillus mycoides Rock1-4]
 gi|228760803|gb|EEM09767.1| hypothetical protein bmyco0003_37430 [Bacillus mycoides Rock3-17]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA +      GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYHVTVTDEAMRHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|229019621|ref|ZP_04176433.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
 gi|229025861|ref|ZP_04182257.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228735413|gb|EEL86012.1| hypothetical protein bcere0029_41520 [Bacillus cereus AH1272]
 gi|228741669|gb|EEL91857.1| hypothetical protein bcere0030_41230 [Bacillus cereus AH1273]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 28/187 (14%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTNEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +               + 
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGD--------LQSIGRR 278

Query: 261 LEKIHIIKEC-----SNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKID 314
           L  +           +       I+  E+   P  R  +    + +            +D
Sbjct: 279 LLIMAYEDVGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALD 338

Query: 315 HRIHLAR 321
             +H  R
Sbjct: 339 AALHDLR 345


>gi|229062094|ref|ZP_04199419.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
 gi|228717246|gb|EEL68921.1| hypothetical protein bcere0026_41660 [Bacillus cereus AH603]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|163942149|ref|YP_001647033.1| recombination factor protein RarA [Bacillus weihenstephanensis
           KBAB4]
 gi|163864346|gb|ABY45405.1| AAA ATPase central domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGQRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
 gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
          Length = 608

 Score = 42.7 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+++A  ++     G    + + L +           T   
Sbjct: 194 EPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLLDQAI--SHGAGETTADQ 251

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 252 VRAMLGLADRGRVLDLMDMVLRGDAAGALTELSAQYAEGADPLAVLRDL 300


>gi|325066429|ref|ZP_08125102.1| DNA polymerase III, delta subunit [Actinomyces oris K20]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 54  SLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLS--TEKKVLDCLEEIIIKNICN 111
            +  L A   +       + + S SLF + +++ +  L   T+  + D +  +   +   
Sbjct: 46  EITRLEAATYE--PHQL-DTLVSPSLFGEPRLVYVPALEQMTDALLSDLIAYVGAADPEV 102

Query: 112 HIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAK 170
            +I+  +   +    L  I  K +    I C    +      L+   +    + I+ EA 
Sbjct: 103 SVILRHNGGQRGKRLLDAI--KASPYPTIQCEAVKSAKDKSSLVVADVRRAGRRIAPEAV 160

Query: 171 QILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L+  LG D     + + +L         IT  HV+
Sbjct: 161 GALVDALGSDLRELCSAVDQLL--ADTQGTITVDHVR 195


>gi|33152250|ref|NP_873603.1| DNA polymerase III subunit delta [Haemophilus ducreyi 35000HP]
 gi|33148472|gb|AAP95992.1| DNA polymerase III delta subunit [Haemophilus ducreyi 35000HP]
          Length = 341

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 94/265 (35%), Gaps = 15/265 (5%)

Query: 68  STFWNEINSTSLFSKKKIILIE----NLSTEKKVLDCLEEIIIKNICNHIIII-KSNEIK 122
              +  + +  LF  ++II++       + +   +  L  +I  ++   + +   S  ++
Sbjct: 62  EQLFESVQNFGLFFSRQIIILNLPENPTTAQMNHIAKLAGLINADLMLILCLTKFSKAME 121

Query: 123 KNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
           K     ++      ++ +SC   +   L   +     +    +  E  Q+L  +  G+ I
Sbjct: 122 KQAWFTQM---DAKLVQVSCQTPDINRLPIWLANRAKMMGLQLEVEVVQLLAYSYEGNLI 178

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A +  LQ+L     +   IT    K+II         + I+A ++GKI  AI +  +   
Sbjct: 179 ALQQTLQQLQLRTHD-GKITLPQAKEIIEQFAQFTPFQWIDALLEGKIARAIRILKYLKD 237

Query: 243 SKMPSHALLHGFLQKFQ-LLEKIHIIKECSNISFEKIIQKTEK-----NIIPMKRNILQE 296
            ++    LL    ++   LLE                +           I   +R   Q 
Sbjct: 238 EEIQVVMLLRIVQKELLILLEITRSPAAILTSQQALYVGNLRAEFDRLKIWQNRRPFYQS 297

Query: 297 SLRIWNKNLVRETLHKIDHRIHLAR 321
           +++  +   +   + ++       +
Sbjct: 298 AIQRLSYKKLYLLIQQLAELEKQTK 322


>gi|195387339|ref|XP_002052353.1| GJ22160 [Drosophila virilis]
 gi|194148810|gb|EDW64508.1| GJ22160 [Drosophila virilis]
          Length = 1942

 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 132  EKFTSVLAISCYPDN-KIHLMDLIEESLLIGQKSIS---KEAKQILLANLGG---DRIAS 184
            E         C  D+ +  ++  I E+  +    IS    E+   L   LG     R  +
Sbjct: 1218 ESAPQADTDGC--DSLQASVISRISEAKALQNNRISEMSAESLVWLSHRLGPVLTARHIT 1275

Query: 185  RNELQKLSS-YCLEDI---LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            RN L+ LS  Y  ++     +   +  D+  D   L    I NA + G   +A  + +  
Sbjct: 1276 RNLLKLLSLCYVGQENLLPEVETGNCGDLSADASNLNYFSIANARVVGD-RSAARVLECL 1334

Query: 241  LASKM--PSHALLHGFLQKFQLL-----EKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
            ++       + LL  +      L     +++    E + IS  ++++     ++      
Sbjct: 1335 MSIAALYGENFLLLQYFPHISELIGLCSKRMTGSLEGAIISSLQLVKYMLPCLM---DAT 1391

Query: 294  LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            + E L+    + +   + ++    +L     YL ++++ +  L
Sbjct: 1392 IMEHLQHMLLDAILLPILRLLSSTNLLMPSGYLGRSLLARKFL 1434


>gi|45383784|ref|NP_989497.1| laminin subunit beta-2 [Gallus gallus]
 gi|2708707|gb|AAB92586.1| laminin beta 2-like chain [Gallus gallus]
          Length = 1792

 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 46/259 (17%)

Query: 88   IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147
            +   + E   L               +  ++  + K N  R   E               
Sbjct: 1457 LRRAAGEVAQLSHRVAEAKGKADEARLQAQA-ALDKANQTRARVEHSNK---------EL 1506

Query: 148  IHLMDLIEESLLIGQKSISKEAKQILLAN-LGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L+  ++  L         E+ +++ +  L     AS  ++ +L+              
Sbjct: 1507 RELISHVKAFLSQEG--ADPESIEVVASRVLELSLPASPAQIHRLA-------------- 1550

Query: 207  KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            ++I      L   + I     G +  A  L      +K  +  +        Q LE+   
Sbjct: 1551 EEIKARVPSLASVDAILEQTAGDVRRAGQLLQDAQRAKARAEGVRGTAEAVQQALEEARQ 1610

Query: 267  IKECSNI---SFEKIIQKTEKNIIPMKRNI--LQESLRIWNKNLVRETLHKI------DH 315
             +  +     S    IQ +E  I  M+     +++ L           + ++        
Sbjct: 1611 AQGAAGQALHSTAADIQHSEHTIGTMRAQTLGVEQQL--------ASAMERLGLLEGQTD 1662

Query: 316  RIHLARKKKYLEKNIIFQT 334
             + + R    L        
Sbjct: 1663 ALKVKRANNSLAATRAHDA 1681


>gi|297582360|ref|YP_003698140.1| DNA polymerase III subunits gamma and tau [Bacillus
           selenitireducens MLS10]
 gi|297140817|gb|ADH97574.1| DNA polymerase III, subunits gamma and tau [Bacillus
           selenitireducens MLS10]
          Length = 600

 Score = 42.7 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++  +EE +  G  ++  +A  ++     G    + + L +  SY   D  +T   
Sbjct: 179 TAHTMIKRMEEIIEDGDLAVDPDALSMIARASEGGMRDALSLLDQAISYA--DTSVTLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           V  II       + +++ A +  ++ + +   D  ++     
Sbjct: 237 VLSIIGAASQDLMYDVMEALLDQQVADGLTAIDRLMSDGKDP 278


>gi|241207078|ref|YP_002978174.1| DNA polymerase III subunits gamma/tau [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860968|gb|ACS58635.1| DNA polymerase III, subunits gamma and tau [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 625

 Score = 42.7 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQH 205
              L+ L              +A  ++     G   ++R+ L  L         ++  + 
Sbjct: 200 ASDLVGLFTTIAAKEGIEAEADALAMIARAAEG---SARDGLSLLDQAIAHGAGVVQAEA 256

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +      +L        L+ ++ 
Sbjct: 257 VRSMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLK 316

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            + + +N      +++T+      K   +    RIW
Sbjct: 317 YVPDAANDPSLSEVERTKAA-EFAKGVAVTTLSRIW 351


>gi|309809322|ref|ZP_07703191.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|312873939|ref|ZP_07733975.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2052A-d]
 gi|308170435|gb|EFO72459.1| DNA polymerase III, delta subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|311090488|gb|EFQ48896.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2052A-d]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      ++ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLTYV-----DVLESGIDGLIATMSESSLFSLQ 71

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKVLKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDEQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 20/195 (10%)

Query: 145 DNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LED 198
           D +I L   I++S   L      + ++A +       GD  ++ N L+            
Sbjct: 155 DVRIALDRAIDDSDRGLKSYHPVVDEDAMEYFSTQSQGDVRSALNALELAVLSADEENNQ 214

Query: 199 ILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             IT    KD +           D H   +     +     +  A+      + +     
Sbjct: 215 RHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPT 274

Query: 249 ALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVR 307
            +    +  +   E + +    +       IQ  E+   P  R  L ++ + +       
Sbjct: 275 IVRRLLVISY---EDVGLASPSAGQRTLAAIQSAERLGFPEARIPLSQAVIELCLSPKSN 331

Query: 308 ETLHKIDHRIHLARK 322
             +  ID  +   RK
Sbjct: 332 SGITAIDSALSDIRK 346


>gi|251773179|gb|EES53732.1| AAA ATPase [Leptospirillum ferrodiazotrophum]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 20/141 (14%)

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN 186
            + +L     P ++  L  L++  L             +   A+ +L+   GGD      
Sbjct: 154 ASRLLLFPFQPLDENALSTLLDRGLHRLARETHGPPLQLDPAARSLLVRYSGGDGRRLLL 213

Query: 187 ELQKLSSYCLEDI----LITEQHVKDIIC---------DTHVLYIEEIINATIQGKIYNA 233
            L+               + E+ V  I+          D+H   I   I +        A
Sbjct: 214 ALESAVLMASGRGGEEFRVGEEDVLAILSRAGQVYGDKDSHYDTISAFIKSVRNYDPDAA 273

Query: 234 IMLADFFLASKMPSHALLHGF 254
           +      +        +    
Sbjct: 274 LHWLARMIEGGEDPLYIARRL 294


>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
 gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
          Length = 309

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 18/191 (9%)

Query: 75  NSTSLFSKKKI------ILIENLSTE--KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
            +   F++++I      ++I + +          +  ++  +      I+        NT
Sbjct: 82  TTIKSFAQRRIKDCSFKVIILDEADSMTTAAQQAMRRVMEVHSSECRFILIC------NT 135

Query: 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
           L KI E   +    +         +++ + E        ISKEA  +++    GD   S 
Sbjct: 136 LTKIFEPIQSRCAILRFDRIENSMILERLREISKDEGIKISKEALDLIVELSDGDMRQSL 195

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           N LQ   S       I + ++  II       IE ++   ++ +   A+ + D     K 
Sbjct: 196 NILQACIS---SSETIDQGYIIKIIGLPSPKRIERVLERLLRNEAEEALKMFDEIWDEKF 252

Query: 246 PSHALLHGFLQ 256
               L++ F +
Sbjct: 253 DPLDLINSFFR 263


>gi|261749143|ref|YP_003256828.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497235|gb|ACX83685.1| DNA polymerase III subunit gamma/tau [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 574

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   +++     +  I  EA  ++  N  G    + N  +KL+ Y  +   I+ + V 
Sbjct: 162 RDIFFYLKKIAEKERIEIDNEALFLISKNGNGSLSEALNTFEKLTFY--DQRKISRELVM 219

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           + +      Y  +II+  +  KI   ++L D      + S   + G  + F+ L  
Sbjct: 220 EKLGILDTSYYFKIIDYLLDQKISQILILLDKIFQFGVSSINFISGLTKHFRDLLL 275


>gi|229175073|ref|ZP_04302591.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
 gi|228608441|gb|EEK65745.1| hypothetical protein bcere0006_41550 [Bacillus cereus MM3]
          Length = 428

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYDVTVTSEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
           japonicus yFS275]
          Length = 344

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 37/200 (18%)

Query: 102 EEIIIKNICNHIIII--KSNEIKKNN--TLRKIAEKFTSVL--AISCYPDN--------- 146
           ++ +      H I+I  +++ +       LR+  E +++    A++C   N         
Sbjct: 112 QKKVNLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSR 171

Query: 147 ----------KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
                     +  +   + E       SI+ +    L+    GD    R  +  L S   
Sbjct: 172 CAILRYSRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGDM---RQAINNLQSTVA 228

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
              L+  ++V  +      + + ++I   + G I  A+               ++    +
Sbjct: 229 GFDLVNSENVFKVADQPSPVAVLDMIRHCMHGDIDKALERLKGIWGLGFSPVDIITTMFR 288

Query: 257 ---------KFQLLEKIHII 267
                    ++  LE +  I
Sbjct: 289 VVKTMNEVPEYSRLEMLREI 308


>gi|289675758|ref|ZP_06496648.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 138

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQAGASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +++++ +   +     K    L E   +   + +++I   ++  + 
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSA 120


>gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32]
 gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32]
          Length = 438

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           E  L     +I+ +A   +    GGD   + N L+  +    E+  IT ++V++ +    
Sbjct: 185 ERGLGNLDLAITDDALSYMAEQAGGDGRVALNTLETAARLA-ENGTITIENVREAVQKKP 243

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                  + H   I   I +        A+      + +      +L       +++   
Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDAAVYWLARLIEAGEDPLFILR------RMVILA 297

Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319
                 ++    +++    +      +P  R IL +++           +   ID  +  
Sbjct: 298 SEDIGNADPRALQVVVSALQAFQMVGMPEGRIILSQAVTYLATAPKSNASYLAIDEALAE 357

Query: 320 ARKKKY 325
            RK   
Sbjct: 358 VRKSGA 363


>gi|297183162|gb|ADI19304.1| hypothetical protein [uncultured SAR406 cluster bacterium
           HF0500_01L02]
          Length = 335

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 111/314 (35%), Gaps = 29/314 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITY--HDPFSLVVLNALEIQKNISTFWNEINSTSL 79
             +   G D+ L       F + I+     +D    ++L   E++ N     +++ +T L
Sbjct: 25  PFYFLMGEDQFL----QQWFIQKITDCLFSNDKVKKMILIPDEMRSNE--IMDKLMATDL 78

Query: 80  FSKKKIILIENLSTEK-KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVL 138
           F+ KK+ ++ N +  K KV D + +   K    + ++   NE    N   +       V 
Sbjct: 79  FNSKKLFILRNPNALKGKVRDEMIDFCQKPSDLNTLVFIQNEYGAKNKFIQSL--VRVVN 136

Query: 139 AISCYPDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            ISC    +  +++  +  L       +SK     L+   G      +NE+ K+S    +
Sbjct: 137 PISCATPFESDMINWAKFFLKENGIYEVSKPIINTLIEIAGDSLSHLKNEIDKVSILVDD 196

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
              + ++ +             E  N   Q ++  ++ L    ++       LL+   + 
Sbjct: 197 SKELNQEDITQFSGWKRKFRQYEFFNFLGQRRLKESMELGRAMVSQDTTMINLLYPLTEF 256

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW----NKNLVRETLHKI 313
           FQ L  I I    +++                    +   L+ +    +   +   L ++
Sbjct: 257 FQELLFIKISDGTNSVKKG----------YTRLSPSVNRELKHYAKQFSNKEITIALKRL 306

Query: 314 ---DHRIHLARKKK 324
              D ++  +R   
Sbjct: 307 GQIDAKLKTSRIND 320


>gi|292656553|ref|YP_003536450.1| replication factor C large subunit [Haloferax volcanii DS2]
 gi|291372005|gb|ADE04232.1| replication factor C large subunit [Haloferax volcanii DS2]
          Length = 488

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 78/232 (33%), Gaps = 21/232 (9%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ 64
           ++   + +  K         + +GS         +    ++     +  +        I+
Sbjct: 21  KARDALAEWAKTWDDHREAVVVHGSPGIGKTSAAHALAADMGWETVELNASDQRTGDVIE 80

Query: 65  KNISTFWNEIN---STSLFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIII 116
           +             S++  S +++++++         ++     +  ++  +    ++I 
Sbjct: 81  RFAGRAAKNATLAGSSAGTSTRQLVILDEADNIHGNYDRGGASAVTRLVKSSSQPIVLIA 140

Query: 117 -KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
            +  ++ +   LR   ++      I     +   ++ ++ +           +A   +  
Sbjct: 141 NEFYDMSRG--LRNACQE------IEFRDVSARSIVPVLRDICRKEGLEFESDALDRIAE 192

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
              GD  ++ N+LQ +         ITE+ V     D   + + E ++A ++
Sbjct: 193 MNSGDLRSAVNDLQAI---AEGREKITEEDVVMGDRDRS-VGLFEFLDAVLK 240


>gi|332703468|ref|ZP_08423556.1| DNA polymerase III delta [Desulfovibrio africanus str. Walvis Bay]
 gi|332553617|gb|EGJ50661.1| DNA polymerase III delta [Desulfovibrio africanus str. Walvis Bay]
          Length = 342

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 10/137 (7%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLSTEKKVL-DCLEEIIIKNICNHIII--IKSNEIKK 123
            + FW +++S  L    K++L+      K      L   +         I  I+S   K 
Sbjct: 45  PARFWQDLSSPGLLGGSKLVLLRRAEALKADAWKELSPRLAGFNEACWPIFCIESAWQKG 104

Query: 124 NNTLRKIAEKFTSVLAI-------SCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           +  L     K     A              +  L   +           + +  + L A 
Sbjct: 105 SPKLPAHLTKAKPWEAAKARNWVWQSPGLTRKTLPGFVLARFKAEGLHATPQVLEGLCAR 164

Query: 177 LGGDRIASRNELQKLSS 193
           L  D  A  +E+ KLS 
Sbjct: 165 LPEDASAVSSEIAKLSL 181


>gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133]
 gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11]
 gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46]
          Length = 415

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 145 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 322 SNSAMSAIDSALSDIR 337


>gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 427

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 157 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 216

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 217 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 276

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 277 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 333

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 334 SNSAMSAIDSALSDIR 349


>gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398]
 gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 424

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|259500691|ref|ZP_05743593.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners
           DSM 13335]
 gi|302191381|ref|ZP_07267635.1| DNA polymerase III, delta subunit [Lactobacillus iners AB-1]
 gi|325911491|ref|ZP_08173902.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 143-D]
 gi|259168075|gb|EEW52570.1| DNA-directed DNA polymerase III delta subunit [Lactobacillus iners
           DSM 13335]
 gi|325476691|gb|EGC79846.1| DNA polymerase III, delta subunit [Lactobacillus iners UPII 143-D]
          Length = 328

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      I+ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWIKDQIVDEL 276


>gi|219850060|ref|YP_002464493.1| DNA polymerase III subunits gamma and tau [Chloroflexus aggregans
           DSM 9485]
 gi|219544319|gb|ACL26057.1| DNA polymerase III, subunits gamma and tau [Chloroflexus aggregans
           DSM 9485]
          Length = 613

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              + L + + +   + + I+ + E+ K   T+    ++FT V        +   +   +
Sbjct: 135 AAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRH------SVTSMAAHV 188

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
                     + + A + +     G    +   L++L+S+   +  IT QHV+ ++  T 
Sbjct: 189 RRIAAAEGIVLVEGAPEAIARAATGSMRDALGILEQLASFV--EGPITLQHVQSLLGMTA 246

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI-----HIIKE 269
              ++ +I A +   +  A+   +                +++ + +  +       + +
Sbjct: 247 AAEVDALIEALLSADLTAALRAVNAVANQGADLRQFARDVVERLRAVMLLNATGDRTLLD 306

Query: 270 CSNISFEKIIQKTEK 284
             +    +++Q  ++
Sbjct: 307 LGDDEVAQLMQWAQR 321


>gi|298294413|ref|YP_003696352.1| DNA polymerase III subunits gamma and tau [Starkeya novella DSM
           506]
 gi|296930924|gb|ADH91733.1| DNA polymerase III, subunits gamma and tau [Starkeya novella DSM
           506]
          Length = 658

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 57/174 (32%), Gaps = 6/174 (3%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI---LIT 202
               L   +          I  EA  ++     G    + + L +  ++         + 
Sbjct: 228 EAGTLARHLRAICDAEGVGIDTEALSLVARAAEGSVRDALSLLDQAIAHAGGQSSGNTVH 287

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            + V+ ++       + ++  A ++G +  A+        S      ++    +   L+ 
Sbjct: 288 GEQVRALLGLADRGRVIDLFEALMKGDVAQALTELREQYDSGADPAVVIADLAEFTHLVT 347

Query: 263 KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           K+ II E ++     +  +  +     K   ++   R W   ++ + L ++   
Sbjct: 348 KLKIIPETAD-DPALVEAERVRGRDFAKALSMRVLARAW--QMLTKGLSEVQQA 398


>gi|289812311|ref|ZP_06542940.1| DNA polymerase III subunit delta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 135

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
            A Q+L     G+ +A    L++LS     D  +T   V+  + D         ++A   
Sbjct: 1   AANQLLCYCYEGNLLALAQALERLSL-LWPDGKLTLPRVEQAVNDAAHFTPFHWVDALTD 59

Query: 228 G-KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286
           G K     ++             LL    ++  LL  +   ++ ++     +  K    +
Sbjct: 60  GEKQTRVCIILQQLRLEGSEPVILLRTLQRELLLLVNLK--RQSAHTPLRALFDKHR--V 115

Query: 287 IPMKRNILQESLRIWNKNLV 306
              +R ++ ++L+  +   +
Sbjct: 116 WQNRRPMIGDALQRLHPAQL 135


>gi|254414024|ref|ZP_05027792.1| DNA polymerase III, subunits gamma and tau [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179160|gb|EDX74156.1| DNA polymerase III, subunits gamma and tau [Microcoleus
           chthonoplastes PCC 7420]
          Length = 379

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 73/198 (36%), Gaps = 15/198 (7%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              + + + +  L  + S + EA +++  +  G    S   L++L+     +  I   HV
Sbjct: 185 TQDITERLSQITLNEKISANPEALRLIAQHSQGGMRDSVQLLEQLAMST--NGKIEPHHV 242

Query: 207 KDIICDTHVLYIEEIINATIQ---GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
           +D+I       + ++  +  Q    +++N + L++      +    L+   L   + L  
Sbjct: 243 RDVIGSIPADSLVDLCVSIFQDTPQRLHNLMALSNQLNDEGVEPVHLVKELLAIHRDLLV 302

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH--LAR 321
             + ++ +++   K+          +  + ++   ++ +   +   L  ++         
Sbjct: 303 FQLSQDTNSLKQGKV-----PFASLIDLSSIESLSQLVSIPEIHHRLLTLEAAALSIQQS 357

Query: 322 KKKYLEKNIIFQTILYIA 339
               +   I    +L +A
Sbjct: 358 SNPLIGLEIC---LLQLA 372


>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
           SK209-2-6]
 gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
           SK209-2-6]
          Length = 603

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I ++A  ++     G    + + L +           T   
Sbjct: 194 EPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 251

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++I+  ++G    A+       A      A+L   
Sbjct: 252 VRAMLGLADRGRVLDLIDMILRGDAAGALSELGAQYAEGADPLAVLRDL 300


>gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
           CC9311]
 gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           CC9311]
          Length = 643

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                I  EA  ++     G    + + L +LS        I    V D++       + 
Sbjct: 197 QESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGP---IKADAVWDLLGAVPEQELL 253

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
            +  A  +G+    +  +   L       A+L G     + L  + +  +        + 
Sbjct: 254 NLAEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPD--RPELTGVS 311

Query: 280 QKTEKNIIPMKRNILQESLRIWNK 303
            +  + +  + + + ++ L  W  
Sbjct: 312 PQFREQLPALAKRLGRQRLLYWQA 335


>gi|312871422|ref|ZP_07731517.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           3008A-a]
 gi|311093075|gb|EFQ51424.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           3008A-a]
          Length = 328

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      I+ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
 gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
           DSM 3645]
          Length = 618

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
              +   EA ++L     G    S++ L++L         IT   V  ++       I  
Sbjct: 209 EGVTAEPEALRLLARKANGSMRDSQSLLEQLL--AFGGREITVADVNQMLGAAGSEQIAV 266

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I+ A         +   D  L   +    L+   L  F     +  +   +  +  +   
Sbjct: 267 IMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFF---RDMMTLAVGAGPTLLQT-- 321

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKK 324
                ++P     ++   + +    V   +  +D  +   ++  
Sbjct: 322 -----VLPTDAEKIEAVAKSYGLANVMAAVQILDDALVRMQRSA 360


>gi|163732699|ref|ZP_02140144.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
           Och 149]
 gi|161394059|gb|EDQ18383.1| DNA polymerase III subunits gamma and tau [Roseobacter litoralis
           Och 149]
          Length = 584

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+ +        I+++A  ++     G    + + L +           T   
Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAI--SHGAGETTAAQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDL 296


>gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 424

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|284046734|ref|YP_003397074.1| DNA polymerase III subunits gamma and tau [Conexibacter woesei DSM
           14684]
 gi|283950955|gb|ADB53699.1| DNA polymerase III, subunits gamma and tau [Conexibacter woesei DSM
           14684]
          Length = 724

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-----L 200
           N   +  ++         +I  +A  ++  +  G    +   L++L++Y           
Sbjct: 181 NVEEIAGVLRRVADQESIAIPDQAVALVARHATGSFRDALGTLEQLTTYGGSGADGTGAE 240

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+ + V  ++       +   ++A        A++     + +   +  L+       + 
Sbjct: 241 ISVEDVLAVLGVADAEALFGALDAVSAHDARAALLAVARLVDAGRDAGGLVRELEAHARE 300

Query: 261 LEKIHIIKEC 270
           L  + ++ E 
Sbjct: 301 LLAVQVLGEV 310


>gi|330983038|gb|EGH81141.1| DNA polymerase III subunit delta [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 123

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
            V++  G D  L  E  +  +        D   +   +A     +  T      S SLF+
Sbjct: 18  PVYVISGDDPLLCQEAADAIRAAARQQGFDERQVFSADASF---DWGTLLQASASMSLFA 74

Query: 82  KKKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           +++++ +   +     K    L E   +   + +++I   ++  + 
Sbjct: 75  ERRLLELRLPSGKPGDKGAAALMEYCARPAEDTLLLISLPKLDGSA 120


>gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 424

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRQVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +      +I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAVIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 763

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 101/303 (33%), Gaps = 28/303 (9%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLSTEKKVL-DCLEEIIIKNI 109
           ++ LEI    +   +EI +         +  +KK+ +I+          + L + I +  
Sbjct: 88  MDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFIIDEAHMLTNEAWNALLKTIEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I  + EI+K   T+    +++T              +   ++        ++   
Sbjct: 148 DHVMFIFATTEIEKLPVTIVSRCQRYTFRRI------TSDDIAQRLQYVADKEGFALEDN 201

Query: 169 AKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228
           A +++  +  G    + + L +          IT   V+++I      +I + ++A   G
Sbjct: 202 AARLIAVHADGGLRDALSILDQCVGMA--SGEITPAVVEELIGLVSKDWIIKFLSALHNG 259

Query: 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIP 288
                +      L+       ++    Q  + L    +  +   +               
Sbjct: 260 DGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEELKVYDSF--------- 310

Query: 289 MKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNF 348
            +   L+++ +      + + + ++   +  A++       I    ++  A  +  +++ 
Sbjct: 311 -RTEFLEQA-KDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVLCAGVSKAHDDV 368

Query: 349 YKR 351
             R
Sbjct: 369 EDR 371


>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
 gi|150415671|sp|A1RV38|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 320

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 45/235 (19%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
            +I E + +F +   +    PF LV+L+            + + S +  + ++I+ I   
Sbjct: 82  NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN---NTLRKIAEKFTSVLAISCYPDNKI 148
           +T   +L      II+ I + +++I+ N + K    + LR IAE                
Sbjct: 131 NTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN--------------- 175

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
                           IS +A + +     GD    R  +  L      +  ITE  V  
Sbjct: 176 ------------EGVKISDDALETIYEFTQGDM---RKAINALQIAAATEKEITEDVVAR 220

Query: 209 IICDTHVLYIEEIINATIQGKIYNAI-MLADFFLASKMPSHALLHGFLQKFQLLE 262
            +       + E +   ++G    A+  +  F +   +    ++    ++   L+
Sbjct: 221 ALGMVSPRLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRLD 275


>gi|312872377|ref|ZP_07732447.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092200|gb|EFQ50574.1| DNA polymerase III, delta subunit [Lactobacillus iners LEAF
           2062A-h1]
          Length = 332

 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YG++  L   ++  F K    + +D   +       ++  I      I+ +SLFS +
Sbjct: 17  LLIYGTNDLLNNYIMTDFVKQKQFSNYDLIYV-----DVLESGIDGLIATISESSLFSLQ 71

Query: 84  KIILIENLS--------TEKKVLDCLEEIIIK-NICNHIIIIKSN--EIKKNNTLRKIAE 132
           ++I+++N           + K L+ L+++I   +I + +I+  +N  +I K   + K+  
Sbjct: 72  RLIIVKNPIFLSTKFVVKDSKQLEKLKQLIDNLSILDDLIVFVANYEKIDKRKAIVKLLI 131

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  +V+  +        +  +++      +     +A   L+         + N   KL 
Sbjct: 132 KNVNVVETNF---KAQEVAKILKSIAAAEKIKFIGDAFTELIKRSDNVFSLALNNYLKLK 188

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           +  +E   I  + VK  I  +    + EI+ A        A    D  + + +   ALL 
Sbjct: 189 N-IVEGKEILPEVVKSNIDQSLSENVFEIMTAIFNKNYVEANRRLDDQINNGLTPIALLA 247

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
            F  + + L  + I+ +      ++I+ + 
Sbjct: 248 IFESQLEFLLCVKIL-QKRGWVKDQIVDEL 276


>gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
           as4aup]
 gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
           as4aup]
          Length = 646

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 64/205 (31%), Gaps = 15/205 (7%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   + +     +  +  +A  ++     G    + +   +       +  +    
Sbjct: 190 ESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAI--AHSNGNVNAIA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G + NA+        +      +L        L+ ++ 
Sbjct: 248 VRTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADFNHLVTRLR 307

Query: 266 ---IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR- 316
               I E  +++ E+ ++  +      K+  +    R W         V +T   +    
Sbjct: 308 FTPEIVEDFSLTEEQRLRSLD----FSKKLSVPILSRNWQMLLKGLQEVNQTARPLQAAE 363

Query: 317 IHLARKKKYLEKNIIFQTILYIAQT 341
           + L R     +   + + +  + Q 
Sbjct: 364 MLLIRLAHTADLPTLDEALKKLTQE 388


>gi|294625531|ref|ZP_06704159.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600200|gb|EFF44309.1| DNA polymerase III subunit delta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 170

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           + G+ +A+  E+ KL+    +   +  + ++ ++ D     +  +   T  G+    I +
Sbjct: 1   MEGNLLAAAQEIDKLALLA-DGKTLDLEAMESLVADAARYDVFRLAETTFSGQPAAVIRM 59

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
                       AL+   +++      +    + +  +    ++     +   ++   + 
Sbjct: 60  LAGLRGEGEAVAALMPILIKELLRTAAL-AKVQANGGNLAAEMKAQG--LWESRQAPFKR 116

Query: 297 SLRIWNKNL 305
           +L+   +  
Sbjct: 117 ALQRHPEPH 125


>gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
 gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
          Length = 478

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNIC 110
            ++ L+A   +    I    + +    +  K K+ +I+ +    K+  + L + + +   
Sbjct: 87  DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165
           + + ++ +  +          EK    +   C      ++  +LIE+ L          I
Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            +EA   +     G    +   L+++  +   +  I  + V   +    +  + + +NA 
Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282
             G +     + D    S      L+   ++   + LE+   + + S     ++ ++ 
Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312


>gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
           HTCC2506]
 gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
           HTCC2506]
          Length = 668

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 60/197 (30%), Gaps = 13/197 (6%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L+  +++     +  I  +A +++     G    S +   +          +T   
Sbjct: 196 ESATLIGHLKQIAEKEKVEIEDDALRLIARAAEGSVRDSLSLTDQAI--AHGAGAVTAGA 253

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++     + + ++    ++G   +A++              +L        L+  + 
Sbjct: 254 VRDMLGLADRVRVIDLFEYIMKGDAASALVELRDQYTVGADPAIVLGDLADFTHLVTTLR 313

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
              E +         + E+ +   K   ++   ++W           +   +   R    
Sbjct: 314 YAPEAA-EDAVLSPDEAERGLAYSKTLSIRTLGQVWQM---------LLKALEETRNADS 363

Query: 326 LEKNIIFQTILYIAQTA 342
             +      ++ IA  A
Sbjct: 364 PRQA-AEMALIRIAHAA 379


>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
 gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
          Length = 548

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              + L + + +   + I I+ + ++ K   T+    ++F               +++ +
Sbjct: 134 GAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP------RDIIERL 187

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
               +  +  I ++A Q+L     G    + + + +  ++   +  IT+  V +++    
Sbjct: 188 RHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFA-TNETITKDDVSEVVGRIS 246

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           +  IE  I   ++G     + L +  + +      LL   +   + L
Sbjct: 247 IEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDL 293


>gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
 gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
          Length = 478

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
            ++ L+A   +    I    + +    +  K K+ +I+ +    K+  + L + + +   
Sbjct: 87  DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165
           + + ++ +  +          EK    +   C      ++  +LIE+ L          I
Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            +EA   +     G    +   L+++  +   +  I  + V   +    +  + + +NA 
Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282
             G +     + D    S      L+   ++   + LE+   + + S     ++ ++ 
Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312


>gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
 gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
          Length = 478

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
            ++ L+A   +    I    + +    +  K K+ +I+ +    K+  + L + + +   
Sbjct: 87  DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165
           + + ++ +  +          EK    +   C      ++  +LIE+ L          I
Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            +EA   +     G    +   L+++  +   +  I  + V   +    +  + + +NA 
Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282
             G +     + D    S      L+   ++   + LE+   + + S     ++ ++ 
Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312


>gi|150021037|ref|YP_001306391.1| DNA polymerase III, delta [Thermosipho melanesiensis BI429]
 gi|149793558|gb|ABR31006.1| DNA polymerase III, delta [Thermosipho melanesiensis BI429]
          Length = 316

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 12/208 (5%)

Query: 66  NISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           ++   + ++++  LFSK  I+ + +    K      + + I     + +I     ++  +
Sbjct: 37  DVKIIFEKLSNLGLFSKNVIVDVIDFDKFKSSERS-KILEINVSSENYLI-----LRTQS 90

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASR 185
            ++K  E           P  +     LIEE L      +   AK  L  N+G + IA  
Sbjct: 91  KVKKKMEGLDIREFKLPNPWEEDKWGKLIEEFLSEEGIKLDGLAK-FLFENVGPNDIAIY 149

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           NE+ KL  +      ++ Q  K+++    V  +++      + +      L +     + 
Sbjct: 150 NEILKLKVF---KDDLSLQLAKELVHKYTVSKLDDFCFMVSKREKDALAYLKEIVRDYEF 206

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNI 273
           P   +++     F  L K+    E  + 
Sbjct: 207 P--VIVYALSNHFITLYKLINFVEVKSR 232


>gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
 gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
          Length = 587

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+          IS +A  ++     G    + + L +           T   
Sbjct: 190 EPEVMIALLRRIADKESAQISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDL 296


>gi|327329176|gb|EGE70936.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL103PA1]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|284049060|ref|YP_003399399.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
           fermentans DSM 20731]
 gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
           fermentans DSM 20731]
          Length = 671

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 15/174 (8%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             + + +E+           EA +++     G     R+ L  L    +    +T + V+
Sbjct: 181 DEIAEHLEKVAKGSHIQAEPEALRLMAIQADG---GLRDALSLLDQCSVMASPVTAETVR 237

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++       + E++    Q  +  A+      L        +L   L+ F+ L      
Sbjct: 238 QVLGLVGREKLRELVTRIGQKNLSGALDALGQLLEQGKEMEQILAELLEYFRALLLYQAD 297

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           +E   I                 R  L E+  ++  + +  ++ +I   I  ++
Sbjct: 298 REYQEIYLTDT------------REALAETASLFTSSQIVASVERIHEAIRESK 339


>gi|254490491|ref|ZP_05103677.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464235|gb|EEF80498.1| DNA polymerase III, subunits gamma and tau, putative [Methylophaga
           thiooxydans DMS010]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           + D +   L         EA + L     G    + + L +          +T + V  +
Sbjct: 183 ISDHLRYLLEQETIKAEPEALEQLARAADGSMRDALSLLDQAI--AFGGGEVTSESVFQM 240

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII-- 267
           +       +  I++A ++      +  +    A     H +    L   Q +  + ++  
Sbjct: 241 LGSISQDQLILILDALLKQDGKALLAQSAELAALGRDFHVVFDFLLSALQQIATLQLVPD 300

Query: 268 ---KECSNISFEKIIQKTEK 284
               E ++    ++  + + 
Sbjct: 301 LEPVEANSPQLTELAAQFDP 320


>gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
 gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
          Length = 663

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 11/189 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           + +        IS++A  ++     G    + + L +L+    +   ++ + V D++   
Sbjct: 189 LSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGD---VSPEQVWDLVGSV 245

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
               +  ++ A  Q    N +      L        +L      ++ L          ++
Sbjct: 246 SEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305

Query: 274 SFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQ 333
                 +  ++ +       +   LR        +   +       +  +  L   +   
Sbjct: 306 -VSCTQETWQQLVNFATELDITFILR-------GQQQLRTAEAQLKSTTQPRLWLEVTLL 357

Query: 334 TILYIAQTA 342
            +L I Q +
Sbjct: 358 GLLPITQNS 366


>gi|308270884|emb|CBX27494.1| hypothetical protein N47_H23160 [uncultured Desulfobacterium sp.]
          Length = 571

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 85/254 (33%), Gaps = 37/254 (14%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN--KIHLM 151
           +  + L + + +   + + I                E     + I   C   +  +I L 
Sbjct: 146 QAFNALLKTLEEPPPHVMFIF------------ATTEPHKIPVTILSRCQRHDFKRIGLD 193

Query: 152 DLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVK 207
           D+ ++ L         +S E+   +    GG     R+ L  L       +  I E+++ 
Sbjct: 194 DITDQMLYICKKENVDVSSESLTAIARAAGG---CMRDALSLLDLVLSCSEGRINEENLS 250

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           DII       I +I +A +   I   + + D    +      L     + F+ L     I
Sbjct: 251 DIIGLVDRRTIFKITDAVLSADIVALLDVLDDLYQNGHNFKELYSEITEHFRNL-----I 305

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE---TLHKIDHRIHLARKKK 324
                   +K+I      I     N++ + ++      + +    L++ +  I  +    
Sbjct: 306 VVKMGKKIDKLISLPSSEI-----NLMVKQVKDIPATFLNQIFDILYREESAIRFS-PNP 359

Query: 325 YLEKNIIFQTILYI 338
            L   IIF  +L +
Sbjct: 360 KLALEIIFFRMLQV 373


>gi|313772740|gb|EFS38706.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL074PA1]
 gi|313832224|gb|EFS69938.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL007PA1]
 gi|314976987|gb|EFT21082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL045PA1]
 gi|327331270|gb|EGE73009.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA2]
 gi|327450460|gb|EGE97114.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL043PA2]
 gi|328761179|gb|EGF74721.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL099PA1]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 456

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 146 NKIHLMDLIEESLLI-----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
              H+ +LI+ +L       G  +I+ EA+  L+   GGD   S   L+  +   + +  
Sbjct: 186 EPGHISELIDRALTDPRGYDGALTITDEARDHLVRLAGGDARRSLTALEAAADVAMGEQA 245

Query: 200 -LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH 248
             I    V+  I           D H   I   I +     +  A+      + +     
Sbjct: 246 AEIDLDIVESSIDTAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMITAGEDPR 305

Query: 249 ALLHGFLQK 257
            +    +  
Sbjct: 306 FIARRLVVH 314


>gi|313834284|gb|EFS71998.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL056PA1]
 gi|314974379|gb|EFT18474.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL053PA1]
 gi|314985375|gb|EFT29467.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA1]
 gi|315097214|gb|EFT69190.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL038PA1]
 gi|327447352|gb|EGE94006.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL043PA1]
          Length = 982

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507


>gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
 gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|225465294|ref|XP_002268959.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1219

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 33/227 (14%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154
              + + +     + I  + ++          E     +   C  Y  N   +  ++  +
Sbjct: 581 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 630

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
            +        +  +A +++  N  G    +   L +LS        IT   V D++    
Sbjct: 631 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 687

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274
              + E++   +       +  A   + S +    L          L  + +        
Sbjct: 688 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVL-------MSQLASLIMDIIAG--- 737

Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
              I+   + +     R++ +  +     + ++  L  +       R
Sbjct: 738 TYHIVDAQQSDSFFGGRSLTEAEM-----DRLKHALKLLSEAEKQLR 779


>gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
 gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
          Length = 478

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 85/238 (35%), Gaps = 21/238 (8%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
            ++ L+A   +    I    + +    +  K K+ +I+ +    K+  + L + + +   
Sbjct: 87  DVIELDAASNRGIDEIRRIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLIEESLLI----GQKSI 165
           + + ++ +  +          EK    +   C      ++  +LIE+ L          I
Sbjct: 147 HVVFVLATTNL----------EKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEI 196

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            +EA   +     G    +   L+++  +   +  I  + V   +    +  + + +NA 
Sbjct: 197 DREALSFIAKRASGGLRDALTMLEQVWKFS--EGKIDLETVHRALGLIPIQVVRDYVNAI 254

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKF-QLLEKIHIIKECSNISFEKIIQKT 282
             G +     + D    S      L+   ++   + LE+   + + S     ++ ++ 
Sbjct: 255 FSGDVKRVFTVLDDVYYSGKDYEVLIQEAVEDLVEDLERERGVYQVSANDIVQVSRQL 312


>gi|319779807|ref|YP_004139283.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 605

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 53/159 (33%), Gaps = 9/159 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           +   L+  +         S+  +A  ++     G    S + L +          +    
Sbjct: 200 DAGALVGHLASISAKEGISVDDDALAMIARAAEGSARDSLSILDQAI--AHGAGSVGADA 257

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+        +     A+L    +   L+ ++ 
Sbjct: 258 VRAMLGLADRARIVDLFEHVMKGDVAAALGEFRAQYDTGADPAAVLTDLAEFNHLVTRLR 317

Query: 266 II---KECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            +    E +++S ++  +  +      +   ++   R W
Sbjct: 318 FVPTAIEDASLSEDERQRGAD----FARTLSVRVLSRTW 352


>gi|317484767|ref|ZP_07943666.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316923974|gb|EFV45161.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 325

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 32/237 (13%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
              FW  +    LFS  +++++ N  +    V   L   + +       +          
Sbjct: 46  PPKFWEILTLQGLFSTSRVLVMRNAHALTADVWKRLSAALSRPNPQTWPLF--------- 96

Query: 126 TLRKIAEKF-----TSVLAISCY--PD-----------NKIHLMDLIEESLLIGQKSISK 167
            L    EK        +  + C+   D               L   I+         +  
Sbjct: 97  CLEVAWEKGQPKIPAHIAKLPCFTFADAKGWIWRSPGLEPRSLRRHIQIRSKALGLDLEP 156

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
               IL   L  D  A   EL KL         +T++  +  +  T    +   +     
Sbjct: 157 GCVDILAETLLPDAAAVDAELSKLQLLAGGKP-LTQEQAR-SVSPTTEFNVFAFLRQLQA 214

Query: 228 GKIYNA-IMLADFFLASKMPSHALLHGFLQKFQLL-EKIHIIKECSNISFEKIIQKT 282
           G+  +    + +     + P   LL    ++ + L + +   +     S ++  Q+T
Sbjct: 215 GQTASVWKSILEEQAKGEEPLFYLLAMLQREARQLWQILAGEQVRMGPSDQQAKQQT 271


>gi|21226355|ref|NP_632277.1| replication factor C large subunit [Methanosarcina mazei Go1]
 gi|42559489|sp|Q8Q084|RFCL_METMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|20904606|gb|AAM29949.1| replication factor C subunit [Methanosarcina mazei Go1]
          Length = 610

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 26/203 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTS- 78
              I YG          +             + ++ LNA +      I        S + 
Sbjct: 49  RAVILYGPAGIGKTSSAHALAG------DMEWEVIELNASDQRTAGVIEKIAGSAASMNT 102

Query: 79  LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAE 132
            F  K++I+++         ++  +  +  II   +    II+ +N+I     T+R I  
Sbjct: 103 FFGGKRLIILDEADNLHGTADRGGMRAISGIIKSTLQ--PIILIANDIYGLTPTVRNICL 160

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +                ++  +++       S S+EA   +  N GGD    R+ +  L 
Sbjct: 161 EIKFGSV------QSRSMVPALKKVCESEGVSCSQEAVLQIAENAGGD---FRSAINDLQ 211

Query: 193 SYCLEDILITEQHVKDIICDTHV 215
           +       +  + +     D   
Sbjct: 212 AAANGKKALEAEDISTAGRDVKE 234


>gi|296504892|ref|YP_003666592.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
 gi|296325944|gb|ADH08872.1| recombination factor protein RarA [Bacillus thuringiensis BMB171]
          Length = 428

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +  +  +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSALQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 488

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 78/183 (42%), Gaps = 18/183 (9%)

Query: 53  FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104
           F ++ LNA + +   S      +   S+S+F KK +I+++ +       +   +  L ++
Sbjct: 65  FEVIELNASDKRNASSIKKVVGHAATSSSVFGKKFLIVLDEVDGISGKEDAGGVSELIKV 124

Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
           I K    + II+ +N+    + +R +      V  I   P +   +  ++++       +
Sbjct: 125 IKK--AKNPIILTANDAYATS-IRNLL---PYVEVIQLNPVHTNSVYKVLKKIAEKEGLN 178

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +  +  +++  +  GD  ++ N+L+ L+        ++ + V+ +        I + +  
Sbjct: 179 VDDKILKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAVQKLPDRKREANIFDALRI 234

Query: 225 TIQ 227
            ++
Sbjct: 235 ILK 237


>gi|315078844|gb|EFT50866.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL053PA2]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|313826420|gb|EFS64134.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL063PA1]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|313813997|gb|EFS51711.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL025PA1]
 gi|313821300|gb|EFS59014.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA1]
 gi|314926534|gb|EFS90365.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA3]
 gi|314980021|gb|EFT24115.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL072PA2]
 gi|314987438|gb|EFT31529.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA2]
 gi|315081813|gb|EFT53789.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL078PA1]
 gi|315107699|gb|EFT79675.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL030PA1]
 gi|315109896|gb|EFT81872.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL030PA2]
 gi|327444628|gb|EGE91282.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL013PA2]
 gi|328758132|gb|EGF71748.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL020PA1]
          Length = 982

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 481

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507


>gi|289428998|ref|ZP_06430678.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J165]
 gi|289157999|gb|EFD06222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J165]
 gi|313806717|gb|EFS45222.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA2]
 gi|313811221|gb|EFS48935.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL083PA1]
 gi|313824758|gb|EFS62472.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL036PA2]
 gi|313828817|gb|EFS66531.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL063PA2]
 gi|313840337|gb|EFS78051.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL086PA1]
 gi|314961562|gb|EFT05663.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA2]
 gi|314989198|gb|EFT33289.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA3]
 gi|315082833|gb|EFT54809.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL027PA2]
 gi|315086408|gb|EFT58384.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA3]
 gi|315087895|gb|EFT59871.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL072PA1]
 gi|327333903|gb|EGE75620.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL096PA3]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
           denitrificans OCh 114]
 gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
          Length = 582

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+ +        I+++A  ++     G    + + L +           T   
Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAI--SHGAGETTAAQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDL 296


>gi|282853259|ref|ZP_06262596.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J139]
 gi|282582712|gb|EFB88092.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           J139]
 gi|313793235|gb|EFS41302.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA1]
 gi|313802801|gb|EFS44017.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA2]
 gi|314964646|gb|EFT08746.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL082PA1]
 gi|314982793|gb|EFT26885.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA3]
 gi|315091446|gb|EFT63422.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL110PA4]
 gi|315105106|gb|EFT77082.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA2]
 gi|327457184|gb|EGF03839.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL092PA1]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|295129771|ref|YP_003580434.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK137]
 gi|50839298|gb|AAT81965.1| DNA polymerase III subunit gamma [Propionibacterium acnes
           KPA171202]
 gi|291376500|gb|ADE00355.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK137]
 gi|332674610|gb|AEE71426.1| DNA polymerase III subunit gamma/tau [Propionibacterium acnes 266]
          Length = 957

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 289 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 347

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 348 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 399

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 400 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 456

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 457 RLHLELMCSRILLPGADTDGRGIHAR 482


>gi|315094384|gb|EFT66360.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL060PA1]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|314965630|gb|EFT09729.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL082PA2]
          Length = 948

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|317131169|ref|YP_004090483.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens
           harbinense YUAN-3]
 gi|315469148|gb|ADU25752.1| DNA polymerase III, subunits gamma and tau [Ethanoligenens
           harbinense YUAN-3]
          Length = 559

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 18/179 (10%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDILITEQHV 206
             +   +          ++++  + +     G   A R+ L  L +        + E+ V
Sbjct: 180 ADIAARLLYVAEQEHIPLTQDGAEAIARLADG---ALRDALSLLDTCANGGGDAVDEEAV 236

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
                     Y+  + +A   G    A+   D   AS   +  L    +  F+ +     
Sbjct: 237 ARAAGLAGRDYLYALSDAVHAGDAPQALRTLDELYASAKDADRLCEELIGHFRAIMLTQ- 295

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
                          +   +   +   LQ++ R ++   V   L  + H     R+   
Sbjct: 296 -------------AGSIPPVSASEAGRLQDAARDFDPETVLHALDTLQHTAETLRRAPV 341


>gi|161621801|ref|YP_054923.2| DNA polymerase III subunits gamma and tau [Propionibacterium acnes
           KPA171202]
          Length = 900

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 232 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 290

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 291 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 342

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 343 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 399

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 400 RLHLELMCSRILLPGADTDGRGIHAR 425


>gi|314922555|gb|EFS86386.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL001PA1]
          Length = 627

 Score = 41.5 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+D + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVDYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
 gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
 gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|297748177|gb|ADI50723.1| DNA polymerase III, delta subunit [Chlamydia trachomatis D-EC]
 gi|297749057|gb|ADI51735.1| DNA polymerase III, delta subunit [Chlamydia trachomatis D-LC]
          Length = 345

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L    ++   
Sbjct: 213 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 272

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               A+L+    ++  L  +  + E S     +I     + 
Sbjct: 273 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 311


>gi|20090661|ref|NP_616736.1| replication factor C large subunit [Methanosarcina acetivorans C2A]
 gi|42559496|sp|Q8TPU4|RFCL_METAC RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|19915708|gb|AAM05216.1| replication factor C, large subunit [Methanosarcina acetivorans
           C2A]
          Length = 607

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 67/203 (33%), Gaps = 26/203 (12%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE--IQKNISTFWNEINSTS- 78
              I YG          +   +++         ++ LNA +      I        S + 
Sbjct: 49  RAVILYGPAGIGKTSSAHALARDMDWD------VIELNASDQRTAGVIEKIAGSAASMNT 102

Query: 79  LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAE 132
           LF  K++I+++         ++  +  +  II   +    I++ +N+I     T+R +  
Sbjct: 103 LFGSKRLIILDEADNIHGTADRGGMRAISGIIKGTLQ--PIVLIANDIYGLTPTIRNLCL 160

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           +                ++  +++         S+EA   +  N GGD    R+ +  L 
Sbjct: 161 EIKFGSV------QSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGD---FRSAINDLQ 211

Query: 193 SYCLEDILITEQHVKDIICDTHV 215
           +       +  + +     D   
Sbjct: 212 AAASGKEKLEVEDIGTAGRDVKE 234


>gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
          Length = 377

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 46/257 (17%)

Query: 24  FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
            +FYG    G    ++   ++     Y +   ++ LNA +                    
Sbjct: 88  LLFYGPPGTGKTSTIVALAREIYGPNYKN--MVLELNASD-------------------D 126

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEKFTS---- 136
           + I ++ N          +           II+ +++ +     N+LR+I EKFT     
Sbjct: 127 RGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLRRIIEKFTKNCRF 186

Query: 137 ------------VLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
                        L   C     +P ++  +   I   ++  +  I+ +A   LL    G
Sbjct: 187 CILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITPDALNALLHLSQG 246

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK-IYNAIMLAD 238
           D   S N LQ   +   +D  I    + + +   H   IE  +++ ++       + L  
Sbjct: 247 DMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDSILKDDWTTAYLTLTK 306

Query: 239 FFLASKMPSHALLHGFL 255
           +   + +    L+ GF+
Sbjct: 307 YKTVNGLALVDLITGFI 323


>gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM
           43247]
 gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis
           DSM 43247]
          Length = 774

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 58/188 (30%), Gaps = 12/188 (6%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            L+E        +++ E   +++   GG    S + L +L     +D  +T      ++ 
Sbjct: 184 GLLERICAQEHVTVAPEVYPLVIRAGGGSPRDSLSILDQL-LAGADDRGVTYDRALALLG 242

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T +  I++ I+A   G         +  + +           L++ + L  +  + + +
Sbjct: 243 VTDIALIDDTIDALATGDGATLFGTVEKVVDAGHDPRRFAVDLLERLRDLILLQAVPDAA 302

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYLEK 328
                +                +   +       +      +   +   R     + L +
Sbjct: 303 ERGLVEAPGDQL--------ARMNRQIETLGAASLTRFAELVHAALGEMRGTTSPRLLLE 354

Query: 329 NIIFQTIL 336
            +  + +L
Sbjct: 355 VMCARMLL 362


>gi|313817549|gb|EFS55263.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL046PA2]
          Length = 633

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
           C3-41]
 gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
           C3-41]
          Length = 636

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 95/292 (32%), Gaps = 47/292 (16%)

Query: 10  IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNIS----ITYHDPFS----------L 55
           ++ S K+  ++H  ++F G            F K ++    I Y+              +
Sbjct: 30  LENSIKHNKVAH-AYLFTGPRGTGKTSAAKIFAKLLNCQSPIDYNPCGECVCCQDSNTDI 88

Query: 56  VVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNH 112
           + ++A       +I     ++N    F KKK+ +I+ +        + L + + +   + 
Sbjct: 89  IEMDAASNNGVDDIRDLREKVNYAPAFGKKKVYIIDEVHMLSTAAFNALLKTLEEPPAHI 148

Query: 113 IIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQKSI 165
           + I+               E       I   C   +        ++  ++  +      I
Sbjct: 149 VFIL------------ATTEPHKIPATILSRCQRYDFRRISQDDIVHRMKTIVEAESVEI 196

Query: 166 SKEAKQILLA-NLGGDRIASR---NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
            ++A +++     GG R A       + K+      +  +T Q + +I        I  +
Sbjct: 197 EEQALRLISQIAAGGMRDALSLLDQAISKV------EGKVTLQDIIEITGAVDTRKIGTL 250

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
           I    Q  I  A+   +    S    H  L   +   + +     + E + +
Sbjct: 251 IQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVNRKLGEKATL 302


>gi|300024235|ref|YP_003756846.1| DNA polymerase III subunits gamma and tau [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526056|gb|ADJ24525.1| DNA polymerase III, subunits gamma and tau [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 617

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 89/289 (30%), Gaps = 39/289 (13%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            NI         T L ++ K+ +I+ +    K   + L + + +   +   I  + EI+K
Sbjct: 132 DNIREIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHVRFIFATTEIRK 191

Query: 124 ----------NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
                        LR++                +  L    ++           +A Q++
Sbjct: 192 VPVTVLSRCQRFDLRRV---------------EQPVLAAHFKKISESEGAEADADALQLI 236

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
                G      + L +     + +  +T   V+D++       I ++  A  +G +  A
Sbjct: 237 ARAAEGSVRDGLSILDQAI--AMGEGHVTAASVRDMLGLADRGRIFDLAEAIFRGDLPAA 294

Query: 234 IMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNI 293
           +            +  ++    +    + ++  + E          +   +++   ++  
Sbjct: 295 LNGFASLHRDGAEASEVIGDLAEAVHAIARVKAVGE----------EPAGESLTAEEKKR 344

Query: 294 LQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
           L +     +   +      +   +    +    +       ++ +A TA
Sbjct: 345 LSDLASRLSMPYLSRAWQMLIKGLEEVGRTPNPDVA-AEMVLIRLAYTA 392


>gi|228993137|ref|ZP_04153059.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
 gi|228766596|gb|EEM15237.1| hypothetical protein bpmyx0001_38730 [Bacillus pseudomycoides DSM
           12442]
          Length = 420

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 159 EKGLGEYHVTVTDEAMCHFANASGGDMRSAYNALELAVLSSFTTDDQSTEITLEIAEECL 218

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335

Query: 320 AR 321
            R
Sbjct: 336 LR 337


>gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 33/227 (14%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154
              + + +     + I  + ++          E     +   C  Y  N   +  ++  +
Sbjct: 455 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 504

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
            +        +  +A +++  N  G    +   L +LS        IT   V D++    
Sbjct: 505 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 561

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274
              + E++   +       +  A   + S +    L          L  + +        
Sbjct: 562 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVL-------MSQLASLIMDIIAG--- 611

Query: 275 FEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
              I+   + +     R++ +  +     + ++  L  +       R
Sbjct: 612 TYHIVDAQQSDSFFGGRSLTEAEM-----DRLKHALKLLSEAEKQLR 653


>gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
 gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
 gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
          Length = 607

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+          I+++A  ++     G    + + L +           T   
Sbjct: 196 EPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 253

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 254 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDL 302


>gi|229048107|ref|ZP_04193680.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
 gi|228723262|gb|EEL74634.1| hypothetical protein bcere0027_40800 [Bacillus cereus AH676]
          Length = 420

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 159 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 218

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 219 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 275

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 276 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 335

Query: 320 AR 321
            R
Sbjct: 336 LR 337


>gi|327334774|gb|EGE76485.1| DNA polymerase III subunit gamma [Propionibacterium acnes HL097PA1]
          Length = 941

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|206969731|ref|ZP_03230685.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228941567|ref|ZP_04104116.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974497|ref|ZP_04135064.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981091|ref|ZP_04141392.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|206735419|gb|EDZ52587.1| ATPase, AAA family [Bacillus cereus AH1134]
 gi|228778632|gb|EEM26898.1| hypothetical protein bthur0002_42520 [Bacillus thuringiensis Bt407]
 gi|228785214|gb|EEM33226.1| hypothetical protein bthur0003_42500 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818123|gb|EEM64199.1| hypothetical protein bthur0008_42040 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942181|gb|AEA18077.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 428

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|229009533|ref|ZP_04166762.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
 gi|228751744|gb|EEM01541.1| DNA polymerase III subunit gamma/tau [Bacillus mycoides DSM 2048]
          Length = 562

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148
              + L + + +   + I I+               E       I   C           
Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+ +++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|30022475|ref|NP_834106.1| recombination factor protein RarA [Bacillus cereus ATCC 14579]
 gi|218235142|ref|YP_002369209.1| recombination factor protein RarA [Bacillus cereus B4264]
 gi|229129680|ref|ZP_04258648.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
 gi|29898033|gb|AAP11307.1| ATPase, AAA family [Bacillus cereus ATCC 14579]
 gi|218163099|gb|ACK63091.1| ATPase, AAA family [Bacillus cereus B4264]
 gi|228653797|gb|EEL09667.1| hypothetical protein bcere0015_41220 [Bacillus cereus BDRD-Cer4]
          Length = 428

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|303239743|ref|ZP_07326267.1| DNA polymerase III, subunits gamma and tau [Acetivibrio
           cellulolyticus CD2]
 gi|302592680|gb|EFL62404.1| DNA polymerase III, subunits gamma and tau [Acetivibrio
           cellulolyticus CD2]
          Length = 555

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 81/244 (33%), Gaps = 29/244 (11%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148
              + L + + +   + + I+               E       I   C   +       
Sbjct: 134 GAFNALLKTLEEPPGHVVFIL------------ATTEPHKLPATILSRCQRFDFRRIPVE 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++  IE      + SI  E  +++     G    + + L +     L +  +T   V  
Sbjct: 182 SIVKRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQCI--SLGNKHLTYDDVLS 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++   +  +I ++++A    ++   + L +  +         +   +  ++ L     + 
Sbjct: 240 VVGIVNNTFIADMVDAINSKEVEKVLYLINVLVMDGKNITQFVSDLVLYYRNL-----LI 294

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIH-LARKKKYLE 327
             ++ + E+II+ +++ I   +     + L         + L  ++  +      +  LE
Sbjct: 295 CSTSRNPEEIIEASKEMI--QRMKAQSQGLSNIEITSAIKELSTLEATMKWSTHARVLLE 352

Query: 328 KNII 331
             +I
Sbjct: 353 VALI 356


>gi|163938031|ref|YP_001642915.1| DNA polymerase III subunits gamma and tau [Bacillus
           weihenstephanensis KBAB4]
 gi|163860228|gb|ABY41287.1| DNA polymerase III, subunits gamma and tau [Bacillus
           weihenstephanensis KBAB4]
          Length = 562

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148
              + L + + +   + I I+               E       I   C           
Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+ +++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|324323719|gb|ADY24763.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 536

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 182 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 240 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283


>gi|229165012|ref|ZP_04292810.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
 gi|228618464|gb|EEK75491.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH621]
          Length = 562

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148
              + L + + +   + I I+               E       I   C           
Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+ +++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|229053869|ref|ZP_04195306.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
 gi|229131030|ref|ZP_04259945.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
 gi|228652425|gb|EEL08347.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST196]
 gi|228721479|gb|EEL72996.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH603]
          Length = 562

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI----- 148
              + L + + +   + I I+               E       I   C           
Sbjct: 134 GAFNALLKTLEEPPGHVIFIL------------ATTEPHKIPATIISRCQRFEFRKISVN 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+ +++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 350

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 44/262 (16%)

Query: 25  IFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           +FYG    G    ++   K+           ++ LNA + ++ IS    ++ + +     
Sbjct: 59  LFYGPPGTGKTSTILALTKELFGPNLIKS-RVLELNASD-ERGISIVREKVKNFA----- 111

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKN--NTLRKIAEKFTSVL--A 139
                  L+  K   + LE+         II+ +++ +  +  + LR+  E ++++    
Sbjct: 112 ------RLTVSKPSKEDLEKY-PCPPYKIIILDEADSMTADAQSALRRTMETYSNITRFC 164

Query: 140 ISCY--------------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
           + C                      D    L  L +        +  +   + +L    G
Sbjct: 165 LICNYVTRIIDPLASRCSKFRFKALDETNALDRL-KFVAQEENVNYKENVLEKILEISSG 223

Query: 180 D-RIA--SRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           D R A        K S+Y  E+  IT   V+++        + EII       I      
Sbjct: 224 DLRRAITLLQSASKTSTYT-ENSEITVNLVEELAGVVPSPALNEIIEVVSSKNIDAVTKY 282

Query: 237 ADFFLASKMPSHALLHGFLQKF 258
            D F+ +     ++++     +
Sbjct: 283 LDKFIRNGWSGTSVVNQLHNHY 304


>gi|296506517|ref|YP_003667751.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           BMB171]
 gi|296327104|gb|ADH10031.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
           BMB171]
          Length = 536

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 182 LQAMIDRLKFISNDQGIQITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 240 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283


>gi|229113196|ref|ZP_04242691.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-15]
 gi|228670222|gb|EEL25570.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-15]
          Length = 541

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288


>gi|229125265|ref|ZP_04254367.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           95/8201]
 gi|228658191|gb|EEL13929.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           95/8201]
          Length = 541

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288


>gi|72160455|ref|YP_288112.1| DNA polymerase III subunits gamma and tau [Thermobifida fusca YX]
 gi|71914187|gb|AAZ54089.1| ATPase [Thermobifida fusca YX]
          Length = 692

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 60/182 (32%), Gaps = 20/182 (10%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
           +      A  +++   GG    + + L +L     ++  IT +    ++  T    + E+
Sbjct: 196 KVPYDPAALPLVIRAGGGSARDTLSILDQL-LAGSDERGITREAAVQLLGYTDSSLLGEM 254

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS----FEK 277
           ++A   G       L D  +             L++ + L  ++ + +  +         
Sbjct: 255 VDALGAGDGAAVFELIDRVVEGGHDPRRFAADLLERVRDLVVLNAVPDALDKGLINVPPD 314

Query: 278 IIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYLEKNIIFQT 334
            +++             +++ R+     +      ++  +   R     + L + +  + 
Sbjct: 315 AVEQMR-----------EQASRL-GAAQLTRAAEILNKGLTEMRGTTSPRLLLELMCSRI 362

Query: 335 IL 336
           +L
Sbjct: 363 LL 364


>gi|15828933|ref|NP_326293.1| hypothetical protein MYPU_4620 [Mycoplasma pulmonis UAB CTIP]
 gi|14089876|emb|CAC13635.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 314

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 81/247 (32%), Gaps = 30/247 (12%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           + YG ++ LI        +N      D          EI        N+I    LFS  K
Sbjct: 3   LIYGQEEFLIESKTKNIIEN---QKKDSIVFTFYENFEIDD----LLNDIVQKDLFSPNK 55

Query: 85  II------LIENLSTEKKVLDCLE---EIIIKNICNHIIIIKSNEIKK----NNTLRKIA 131
           II      L+EN    K +L+ L+   EII  +     I     EI+K    +  L+K +
Sbjct: 56  IIHIKNWKLLENPRPSKVILNKLKLLSEIIENDKSLIFIFSHIGEIEKNFLSDFLLKKAS 115

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            K    L            +  IE  +   +  IS      LL N+        NE+ KL
Sbjct: 116 VKHYKKL-------ELNEKIKFIESYVTKNKIKISTVLISYLLINVSSSISIVINEINKL 168

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
                E+  IT + ++  +         E IN+       +          S +    LL
Sbjct: 169 FL---ENQNITREMIEKSVGFYTKEPNFEFINSIKSRNSNSIWKTFLEQKNSGIEPLDLL 225

Query: 252 HGFLQKF 258
                 F
Sbjct: 226 KQISSAF 232


>gi|312879848|ref|ZP_07739648.1| DNA polymerase III delta [Aminomonas paucivorans DSM 12260]
 gi|310783139|gb|EFQ23537.1| DNA polymerase III delta [Aminomonas paucivorans DSM 12260]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V +   S  G    L     +             VL+A E +  +S   + ++   LF +
Sbjct: 4   VVLLVSSGSGRRRLLEETLARLAGPDSE------VLSAREGETWVSLLADNLSG-GLFDE 56

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
           ++I+++ + + E   L      +++       ++   E      L    E    ++ +  
Sbjct: 57  RRIVVV-DGAQELGPLPPACVALLEPPEASTTLVLLYEQDPGKAL--PPEARERIVRVES 113

Query: 143 --YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
              P      +D IE         +   A  +L      D      E++KL+        
Sbjct: 114 RPLPRFGRERLDWIEGIAREEGVRLEPGALALLSEAFE-DPGELAMEVRKLALL---GET 169

Query: 201 ITEQHVKD-IICDTHVLYIE 219
           + E+ V+   + D   L ++
Sbjct: 170 VGEEQVRALCLGDGSRLLVQ 189


>gi|228910235|ref|ZP_04074053.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
 gi|228849399|gb|EEM94235.1| hypothetical protein bthur0013_43830 [Bacillus thuringiensis IBL
           200]
          Length = 428

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGKYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 283

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +H 
Sbjct: 284 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHD 343

Query: 320 AR 321
            R
Sbjct: 344 LR 345


>gi|229051606|ref|ZP_04195076.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676]
 gi|228721717|gb|EEL73191.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH676]
          Length = 541

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 187 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 244

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 245 ATVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 288


>gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 17/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITEQHVKDII- 210
           E  L      + ++A         GD  ++ N L+          +   IT Q  KD + 
Sbjct: 168 ERGLASYNPKVDEDAMAYFTTQSQGDVRSALNALELAVLSSENIDQQRHITLQDAKDCLQ 227

Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                     D H   +     +     +  A+      + +      +    +  F   
Sbjct: 228 KGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISF--- 284

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNLVRETLHKIDHRIHLA 320
           E + +    +       I+  E+   P  R  L ++ + +         ++ ID  +   
Sbjct: 285 EDVGLASPSAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSGINAIDAALSDI 344

Query: 321 RK 322
           RK
Sbjct: 345 RK 346


>gi|85712669|ref|ZP_01043715.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145]
 gi|85693519|gb|EAQ31471.1| DNA polymerase III, gamma/tau subunits [Idiomarina baltica OS145]
          Length = 640

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           ++  ++  +E  L         +A  +L  +  G    + +   +          +  + 
Sbjct: 179 DREQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAI--AQGQGKVQVES 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++      ++  +++A   G   +     D   +       +L+   +    +  I 
Sbjct: 237 VQRMLGHLADAHVHPLLDALASGDSGSVFEKFDELKSLVPDPLMILNELQRVIHRIALIQ 296

Query: 266 II 267
            I
Sbjct: 297 QI 298


>gi|256370815|ref|YP_003108640.1| putative DNA polymerase III subunit delta [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009607|gb|ACU52967.1| putative DNA polymerase III, delta subunit [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 318

 Score = 41.1 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 103 EIIIKNICNHIIII--KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
            I+  +    I+II   +  + K   L K  +K  + + ++C       +++  +  +  
Sbjct: 97  NILKNHYKKTILIICYNNKVLDKRKKLYKYIKK--NGIILNCVKLKTNEILNFFQNEIEE 154

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKL 191
               I++ A ++L+  LG +  +  NE+ KL
Sbjct: 155 KGYIITQNAIKLLIKFLGENLYSINNEINKL 185


>gi|30913228|sp|O74111|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
           factor C3; AltName: Full=Activator 1 subunit 3
 gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
          Length = 338

 Score = 41.1 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQH 205
             L  +IE+        +S EA Q LL    GD   + N LQ  + Y        I+E+ 
Sbjct: 180 HRLAHVIEQE----SVDLSPEAFQSLLHLSSGDMRRALNVLQ--ACYASVDAGEQISEEL 233

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA-LLHGFLQKFQLLEK 263
           V D +       I  ++ A + G   +A+    +   SK  + A +L  F  +FQ L+ 
Sbjct: 234 VYDCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDL 292


>gi|320450889|ref|YP_004202985.1| DNA polymerase III subunit delta [Thermus scotoductus SA-01]
 gi|320151058|gb|ADW22436.1| DNA polymerase III, subunit delta [Thermus scotoductus SA-01]
          Length = 299

 Score = 41.1 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 13/241 (5%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           L+ ++        +++      K  T R    +                L+  +E     
Sbjct: 65  LKPLLENVPEEVAVLLLDP---KPTTARAAFYRTRERRDFP--TPKGKDLVRHLENRAKR 119

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               +     Q L + L GD  A   EL+KL+       L   + V  +          +
Sbjct: 120 LGFRLPAGIAQYLAS-LEGDLEALERELEKLALLPPPLTLEKVERVVALKPPVSG---FD 175

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           ++ A ++G+   A                LL  F  +F LL +  ++ + +    E  + 
Sbjct: 176 LVRAVLEGEAKAAFRHLRRLREEGEEPLRLLGAFAWQFSLLARAWMLLKENPRPTEADLA 235

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEKNIIFQTILYI 338
           + E +     +  L+ + R   K  +  +L  +      A+  K  +L       T+L++
Sbjct: 236 RLEAH-PYAAKRALELA-RGLPKEALEASLDALIQAERRAKEGKDPWLALERAVYTLLHL 293

Query: 339 A 339
            
Sbjct: 294 T 294


>gi|332007906|gb|AED95289.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 956

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            ++D ++      +  I K+A +++ +   G    +   L++LS        I+   V++
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL---GTRISVPLVQE 574

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           ++       + ++++  +     N +      + + +   AL+   
Sbjct: 575 MVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQL 620


>gi|229115998|ref|ZP_04245393.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-3]
 gi|228667492|gb|EEL22939.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           Rock1-3]
          Length = 541

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                 I+ EA  ++     G    + + + ++ +Y   +  +T + V  ++    +  I
Sbjct: 199 HDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEDVATVVGKVAIQDI 256

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           E++I+   +  + + +      L  K     L
Sbjct: 257 EKLIHYITEKDLTSTLDSLQTILERKQADFFL 288


>gi|314916439|gb|EFS80270.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL005PA4]
 gi|314917280|gb|EFS81111.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA1]
 gi|314921655|gb|EFS85486.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL050PA3]
 gi|314955184|gb|EFS99589.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL027PA1]
 gi|315102222|gb|EFT74198.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL046PA1]
 gi|327454471|gb|EGF01126.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA3]
 gi|327456539|gb|EGF03194.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL083PA2]
 gi|328756234|gb|EGF69850.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL087PA1]
          Length = 948

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|289525092|emb|CBJ14563.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434633|gb|ADH16811.1| hypothetical protein E150_00250 [Chlamydia trachomatis E/150]
          Length = 314

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L    ++   
Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               A+L+    ++  L  +  + E S     +I     + 
Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280


>gi|313764794|gb|EFS36158.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL013PA1]
 gi|314930699|gb|EFS94530.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL067PA1]
 gi|328759443|gb|EGF73059.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL025PA2]
          Length = 982

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 481

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507


>gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium
           papyrosolvens DSM 2782]
 gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium
           papyrosolvens DSM 2782]
          Length = 562

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 2/115 (1%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                 +  +   ++     G    + + L +       +  IT ++V D I      +I
Sbjct: 192 RASGIQLDDDGALLIARLADGALRDALSILDQCI--AEGNNNITHENVLDAIGIVSDDFI 249

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
            EI++      +   +   +   AS           +  F+ L    + K   NI
Sbjct: 250 SEIVDNIQSKNVEGLVADVEKLSASGRDILRFASDLVLYFRNLLICKLSKNPENI 304


>gi|315099548|gb|EFT71524.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL059PA2]
          Length = 982

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 314 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 372

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 373 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 424

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 425 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 481

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 482 RLHLELMCSRILLPGADTDGRGIHAR 507


>gi|313815375|gb|EFS53089.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL059PA1]
          Length = 948

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 390

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 391 ---VIVSAVPDACRSGLIDVSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAP 447

Query: 327 E---KNIIFQTILYIAQTACKNNNFY 349
               + +  + +L  A T  +  +  
Sbjct: 448 RLHLELMCSRILLPGADTDGRGIHAR 473


>gi|225851358|ref|YP_002731592.1| AAA family ATPase [Persephonella marina EX-H1]
 gi|225646654|gb|ACO04840.1| AAA family ATPase [Persephonella marina EX-H1]
          Length = 415

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 62  EIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCL-----EEIIIKNICNHIIII 116
           EI  N + F +EI   SL S+ K+++  +    +++           II     N +  I
Sbjct: 197 EIADNGTLFLDEIGDLSLTSQAKLLVFVDTKEFERLGSSRPKKVNVRIISATNKNLLQSI 256

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176
           K  + + +   R    +    + I    + K  +  ++   L    K I++ A   L+ +
Sbjct: 257 KKGDFRSDLYYRIAITR----IEIPPLRERKEDIPLIVNSYLHRKGKRITQRAMDFLMEH 312

Query: 177 -LGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
              G+    R  L+       +  +I  QH+ D
Sbjct: 313 EWYGNIRELRAVLESACIMAYDRDVIDIQHISD 345


>gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 391

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 121 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 180

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 181 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 240

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 241 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 297

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 298 SNSAMSAIDSALSDIR 313


>gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer
           RA-GD]
          Length = 347

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 37/291 (12%)

Query: 38  INQFKKNISITYHDPFS--LVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-S 92
             +  +    T  D FS  +  L+A       +I    +++       K K+ +I+ +  
Sbjct: 60  ARKINEKDGATSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHM 119

Query: 93  TEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN---- 146
              +  +   + + +   + I I+               EK   +  I   C   +    
Sbjct: 120 LSSQAFNAFLKTLEEPPAHAIFIL------------ATTEKHKIIPTILSRCQIYDFKRI 167

Query: 147 -KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               +   + +       S   +A  ++     G    + +   +L ++      IT   
Sbjct: 168 TIEDIQAHLRKIADKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFT--QKNITLAK 225

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
             +++         +I+       I N ++  +  +      H  + G    +       
Sbjct: 226 AAEVLNILDYDQYIKIVGLIHTNDIPNVLVAFNEIVKKGFDPHIFIAGLGNHY------R 279

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            +    N S   +I+     +    +    E  + W    + + +   ++ 
Sbjct: 280 DLMMAQNSSTLNLIE-----VGEKTKAKYAEQSQKWTAQQLVDAIEICNYA 325


>gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. 18P13]
          Length = 530

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 10/174 (5%)

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMD 152
            +   + L +I+ +       I+ + EI K   T+    ++F     +         +  
Sbjct: 131 SQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRCQRFDFRRILP------EDITA 184

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
            +       Q ++ ++A +++     G     R+ L  L      D  IT   V      
Sbjct: 185 RLLYIAGEEQLTLDEQAARLIARLSDG---GMRDALSLLDQCAAYDSNITLDTVSAAAGI 241

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
                + ++++A  Q     A+ + D   A       L    + + + +  +H+
Sbjct: 242 AGRDALFDLLDAMTQSDPAKAVRILDELYAKSKDMLRLCEELIAQLRNVMLLHV 295


>gi|15604766|ref|NP_219550.1| hypothetical protein CT047 [Chlamydia trachomatis D/UW-3/CX]
 gi|255310849|ref|ZP_05353419.1| hypothetical protein Ctra62_00250 [Chlamydia trachomatis 6276]
 gi|255317149|ref|ZP_05358395.1| hypothetical protein Ctra6_00250 [Chlamydia trachomatis 6276s]
 gi|255348410|ref|ZP_05380417.1| hypothetical protein Ctra70_00245 [Chlamydia trachomatis 70]
 gi|255502951|ref|ZP_05381341.1| hypothetical protein Ctra7_00250 [Chlamydia trachomatis 70s]
 gi|255506620|ref|ZP_05382259.1| hypothetical protein CtraD_00245 [Chlamydia trachomatis D(s)2923]
 gi|3328439|gb|AAC67638.1| hypothetical protein CT_047 [Chlamydia trachomatis D/UW-3/CX]
 gi|296435564|gb|ADH17738.1| hypothetical protein G9768_00250 [Chlamydia trachomatis G/9768]
 gi|296436488|gb|ADH18658.1| hypothetical protein G11222_00250 [Chlamydia trachomatis G/11222]
 gi|296437424|gb|ADH19585.1| hypothetical protein G11074_00250 [Chlamydia trachomatis G/11074]
 gi|297139923|gb|ADH96681.1| hypothetical protein CTG9301_00250 [Chlamydia trachomatis G/9301]
          Length = 314

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L    ++   
Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               A+L+    ++  L  +  + E S     +I     + 
Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280


>gi|294101730|ref|YP_003553588.1| DNA polymerase III, subunits gamma and tau [Aminobacterium
           colombiense DSM 12261]
 gi|293616710|gb|ADE56864.1| DNA polymerase III, subunits gamma and tau [Aminobacterium
           colombiense DSM 12261]
          Length = 554

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 29/274 (10%)

Query: 58  LNALEIQKNISTFWNEIN------STSLFSKKKIILIENLSTEKKVLD--CLEEIIIKNI 109
           L+ +EI    +   +E+       S S FS    + I +      +     L + + +  
Sbjct: 88  LDVIEIDGASNNSVDEVRELKAHVSLSAFSSLYKVYIIDEVHMLSLSAFNALLKTLEEPP 147

Query: 110 CNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE 168
            + + I+ + E  K   T+R   +       I     +  +++  +        ++  +E
Sbjct: 148 SHVVFILATTEPHKVPVTIRSRCQH------IPFRKIDVQNIVKSLSMVAHNENRNAEEE 201

Query: 169 AKQILLANLGGDRIASRNELQKLS-SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
           A   +     G   A R+ L  L     L +  +    V  ++       +E  ++    
Sbjct: 202 ALWEIARQADG---AMRDALSLLEQVMALAEQELRLVDVSRLLGGGSRPELERWVSRVRS 258

Query: 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII 287
           G I     L             ++      F+ L     I         + I+ + K  I
Sbjct: 259 GDISVFSEL-QEMFQRGASPQKVVEDLFVIFRDL----WIVASWGGGALQFIEGSSKEKI 313

Query: 288 PMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                 L++  + WN + + + +      +   R
Sbjct: 314 F-----LEQESKDWNPDHLLKIMDFCAQILPQVR 342


>gi|261880186|ref|ZP_06006613.1| DNA polymerase III [Prevotella bergensis DSM 17361]
 gi|270333160|gb|EFA43946.1| DNA polymerase III [Prevotella bergensis DSM 17361]
          Length = 602

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 24/214 (11%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
           ++  L+A      +NI T   +        + K+ +I+ +        +   + + +   
Sbjct: 91  NIFELDAASNNSVENIKTLMEQTQIPPQTGRYKVFIIDEVHMLSTSAFNAFLKTLEEPPA 150

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQK 163
           + I I+               EK   +  I      Y   ++ + + I+           
Sbjct: 151 HVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVPETIDHLKKVADQEGI 198

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
           S  +EA  I+     G    + +   +++SYC     IT Q V + +          II+
Sbjct: 199 SYEEEALGIIAEKADGGMRDALSIFDQVASYC--QGNITFQKVLEDLNVLDAENYFHIID 256

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
             I+ K+ + ++L +  +A    +  L++G    
Sbjct: 257 LAIENKVSDIMVLVNRIIAKGFDAGNLINGLASH 290


>gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 415

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 145 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 322 SNSAMSAIDSALSDIR 337


>gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
           ISM]
 gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
           ISM]
          Length = 620

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+       Q  IS +A  ++     G    + + L +           T + 
Sbjct: 190 EPEVMIALLRRIADAEQAQISDDALALITRAAEGSARDATSLLDQAI--SHGAGETTAEQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 248 VRAMLGLADRGRVLDLFDLILKGDAAGALTEISTQYADGADPLAVLRDL 296


>gi|227549178|ref|ZP_03979227.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078738|gb|EEI16701.1| crossover junction endodeoxyribonuclease ATPase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 449

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 144 PDNKIHLM--DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
           P++   ++   +++E  + G K++   A++ L+   GGD   +   L+  +    ++  I
Sbjct: 182 PEDIGDVIDRAMVDERGVGGDKTLEPAAREQLVLLAGGDARRALTYLEAAAEAVDDNGAI 241

Query: 202 TEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
           T + V+D +           D H   I   I +     +  A+      + +      + 
Sbjct: 242 TVEVVRDNVNRAIVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMIEAGEDPRFIA 301

Query: 252 HGFLQK 257
              +  
Sbjct: 302 RRLVIH 307


>gi|166154268|ref|YP_001654386.1| hypothetical protein CTL0303 [Chlamydia trachomatis 434/Bu]
 gi|166155143|ref|YP_001653398.1| hypothetical protein CTLon_0298 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335518|ref|ZP_07223762.1| hypothetical protein CtraL_01765 [Chlamydia trachomatis L2tet1]
 gi|165930256|emb|CAP03742.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931131|emb|CAP06696.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 314

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L    ++   
Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
               A+L+    ++  L  +  + E S     +I     + 
Sbjct: 242 EEPLAILNFLRSQY--LLGLRAVAEQSKERKTQIFIAAGEP 280


>gi|289424444|ref|ZP_06426227.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK187]
 gi|289155141|gb|EFD03823.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           SK187]
          Length = 967

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 57/193 (29%), Gaps = 18/193 (9%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 299 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 357

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 358 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 409

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
              +    +       +I   P +   L   +  +    +      +   +   R     
Sbjct: 410 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMRGTTAP 466

Query: 327 E---KNIIFQTIL 336
               + +  + +L
Sbjct: 467 RLHLELMCSRILL 479


>gi|255019295|ref|ZP_05291421.1| DNA polymerase III subunit delta [Listeria monocytogenes FSL
           F2-515]
          Length = 135

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++  +       +++  I   I  A+ +    L  K     +L     +F+LL ++ ++ 
Sbjct: 1   LVVRSLEQNXFLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLKLL- 59

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           E    S ++   K +  + P +  +  +  + + +  + + L ++       +
Sbjct: 60  EQQGYSQQQAATKLK--VHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMK 110


>gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754]
 gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754]
          Length = 427

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 157 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 216

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 217 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 276

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 277 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 333

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 334 SNSAMSAIDSALSDIR 349


>gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117]
 gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 415

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 145 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 204

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 205 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 264

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 265 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 321

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 322 SNSAMSAIDSALSDIR 337


>gi|294155588|ref|YP_003559972.1| DNA polymerase III, delta subunit [Mycoplasma crocodyli MP145]
 gi|291600514|gb|ADE20010.1| DNA polymerase III, delta subunit [Mycoplasma crocodyli MP145]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 110/327 (33%), Gaps = 34/327 (10%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +    G+++  +   I ++K N S      F+++         +I      ++S SL  +
Sbjct: 1   MIFISGTEQYFVNSEIQRYKANFS-----QFNILKFEEP---CDIKNIVENMSSISLLQE 52

Query: 83  KKIILI-------ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-- 133
           K++ +        +  +   K       ++  +  N  I   S E    N+         
Sbjct: 53  KRLFIFPEFYLFSKKETDFSKEEKSFVTLLGSDNYNEYIFTYSKEKITKNSFSDYVVTTS 112

Query: 134 -FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK-EAKQILLANLGGDRIASRNELQKL 191
                 AI            +I++ +     +I+  +A   L   L  +     +EL+KL
Sbjct: 113 IHKEAKAI-----KSSDYPKVIKQIVNDNNGTITIFDAL-YLSQKLPNNLELVVSELKKL 166

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY-NAIMLADFFLASKMPSHAL 250
            S   E++ IT+  +   + D  +      +N+              +   A       +
Sbjct: 167 LS---ENLNITKDIIDCSVGDYGLDDQFSFLNSIPTKNFAFIYKKYIERKTAGDTTLSLI 223

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                    +L    I  + S I   +II     NI   +    +E +  + +  + E +
Sbjct: 224 GQVA--NLFILANKVINFKKSQIPTNEIIDAL--NIHQFRFKKAEELINQFGQKSIMEII 279

Query: 311 HKIDHRIHLARKKKYLEKNIIFQTILY 337
           +K+       ++    ++ I F+  L+
Sbjct: 280 YKLSQIDLDIKRTGVNDE-IAFEIFLF 305


>gi|194334277|ref|YP_002016137.1| DNA polymerase III subunits gamma and tau [Prosthecochloris
           aestuarii DSM 271]
 gi|194312095|gb|ACF46490.1| DNA polymerase III, subunits gamma and tau [Prosthecochloris
           aestuarii DSM 271]
          Length = 617

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 66/206 (32%), Gaps = 27/206 (13%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              +   + + +   + I I  + E+ K   T+    ++F     I         +   +
Sbjct: 142 AAFNAFLKTLEEPPSHAIFIFATTELHKIPATISSRCQRFNFKR-IP-----IGEIQSQL 195

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIIC 211
           +         IS +A  ++     G    +++ L ++ ++ + +     I  Q V +++ 
Sbjct: 196 QMICRAETLQISDDALLLIARKAQGSMRDAQSILDQVIAFSVGNDAEKVIAYQGVAELLN 255

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI------- 264
                   ++ +A  +      + +A F + +       L   ++ F+    +       
Sbjct: 256 YIDDDQFFDVSDAVAENDPVKMLQVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTR 315

Query: 265 ----------HIIKECSNISFEKIIQ 280
                        +    +S   ++Q
Sbjct: 316 LIERTESVKERYQQSAGGLSAPLVMQ 341


>gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL]
 gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 639

 Score = 40.7 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 61/197 (30%), Gaps = 13/197 (6%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               LM  + +        + ++A +++     G    + +   +          +T Q 
Sbjct: 200 ESATLMAHLTKIATAEHVEVDEDALRLIARAAEGSVRDALSLTDQAI--AHGAGAVTAQA 257

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++     + I ++    ++G    A+               +L        L+  + 
Sbjct: 258 VRDMLGLADRVRIIDLFEYLMKGDAAAALKELRDQYVVGADPAVVLADLADFTHLVTTLR 317

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + + +  +    ++  E+ +   K   ++   ++W           +   +   R    
Sbjct: 318 FVPDAAEDAALSPME-AERGLEFSKSLSIRTLGQVWQM---------LLKALEETRNANA 367

Query: 326 LEKNIIFQTILYIAQTA 342
             +      ++ IA  A
Sbjct: 368 PRQA-AEMALIRIAHAA 383


>gi|256004179|ref|ZP_05429163.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 2360]
 gi|281419179|ref|ZP_06250196.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum JW20]
 gi|255991927|gb|EEU02025.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 2360]
 gi|281407328|gb|EFB37589.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum JW20]
 gi|316941749|gb|ADU75783.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum DSM 1313]
          Length = 547

 Score = 40.7 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 72/218 (33%), Gaps = 24/218 (11%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
            ++ ++A       +I    +E+  T   ++ K+ +I+ +        + L + + +   
Sbjct: 89  DVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPA 148

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQK 163
           + I I+               E       I   C   +        ++  IE        
Sbjct: 149 HVIFIL------------ATTEPHKLPATILSRCQRFDFRRIPVDSIVKRIEYIAKESGV 196

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            I +EA +++     G    + + L +     L    +T + V  ++      +I E+++
Sbjct: 197 EIRREASKLIAKLSDGALRDAISILDQCI--SLGSKELTYEDVLSVVGLVTDTFIAEVVD 254

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           A    ++   +   D  +         +   +  ++ L
Sbjct: 255 AIKNKEVGRVLNAVDELVMEGKNIGQFVSELVMYYRNL 292


>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|158514167|sp|A4WLY0|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
           13514]
          Length = 322

 Score = 40.7 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 39/232 (16%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
            +I E + +F +   +    PF LV+L+            + + S +  + ++I+ +   
Sbjct: 82  NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEMYAQ 130

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151
           +T   +L      II+ I +  ++I+ + + K     ++                     
Sbjct: 131 NTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARL--------------------- 169

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             I +        IS +A + +     GD    R  +  L         ITE+ V   + 
Sbjct: 170 RYIAD---NEGVKISDDALEAIYEFTQGDM---RRAINALQIAATTGKEITEETVAKALG 223

Query: 212 DTHVLYIEEIINATIQGKI-YNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
                 + E +N   +G     A  +  F +   +    ++    ++   L+
Sbjct: 224 MVSPRLLRETLNDAFRGNFGKAATQIYGFVVDGGIGELEIVKQLHREALKLD 275


>gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum
           ATCC 27405]
 gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium
           thermocellum ATCC 27405]
          Length = 547

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 72/218 (33%), Gaps = 24/218 (11%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNIC 110
            ++ ++A       +I    +E+  T   ++ K+ +I+ +        + L + + +   
Sbjct: 89  DVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPPA 148

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKI-----HLMDLIEESLLIGQK 163
           + I I+               E       I   C   +        ++  IE        
Sbjct: 149 HVIFIL------------ATTEPHKLPATILSRCQRFDFRRIPVDSIVKRIEYIAKESGV 196

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
            I +EA +++     G    + + L +     L    +T + V  ++      +I E+++
Sbjct: 197 EIRREASKLIAKLSDGALRDAISILDQCI--SLGSKELTYEDVLSVVGLVTDTFIAEVVD 254

Query: 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           A    ++   +   D  +         +   +  ++ L
Sbjct: 255 AIKNKEVGRVLNAVDELVMEGKNIGQFVSELVMYYRNL 292


>gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603]
 gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603]
          Length = 423

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 24/168 (14%)

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDIL 200
            D++  L     E        +  +A         GD  ++ N L+              
Sbjct: 165 EDDQRGLKSYTPE--------VDDDAMTYFSTQSQGDVRSALNALELAVLSATEEDGQRH 216

Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           IT Q  KD +           D H   +     +     +  A+      + +      +
Sbjct: 217 ITLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIV 276

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
               +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 277 RRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 321


>gi|170749547|ref|YP_001755807.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656069|gb|ACB25124.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           radiotolerans JCM 2831]
          Length = 637

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 56/171 (32%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   + +     + ++  EA   ++    G    + + L +          IT Q 
Sbjct: 209 EAPTLHAHLAKVCAAEEVTVEDEALGAIVRAAEGSVRDALSLLDQAI--AHGAGTITAQS 266

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G +  A         S      +L        L+ ++ 
Sbjct: 267 VRDMLGLADRARILDLFEAVMRGSVPAAFAELRAQYDSGADPSVVLSDLAAFTHLVTRLK 326

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++ E +        ++         +  ++   R W   ++ + + ++   
Sbjct: 327 VVPEAAADPTLSETERVR-GAAFADKLSIRALSRAW--QILLKAIPEVQAA 374


>gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 435

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 19/197 (9%)

Query: 53  FSLVVLNALEIQKNI---STFWNEINSTSLFSKK-KIILIENLST-----EKKVLDCLEE 103
           + ++ LNA +++            +   SLF  K +IIL + +       ++  L  + E
Sbjct: 69  YEVLELNASDVRTGERIRQVMGGSMKMGSLFGFKGRIILFDEVDGLNVREDRGGLAAIVE 128

Query: 104 IIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163
           +I ++     II+ +N    +   R   E       I   P ++  ++ ++         
Sbjct: 129 LIRESTW--PIIMTANN-PWDPKFR---ELRDEAEVIQLKPLDEDDILTILRRICNAEGI 182

Query: 164 SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223
              ++A +++  + GGD    R  +  L +      ++T+  V  +    H   + +I++
Sbjct: 183 KCEEDALKLIAESSGGD---VRAAINDLQAAAEGKKVLTKDDVT-VTERAHQFDMFKILD 238

Query: 224 ATIQGKIYNAIMLADFF 240
                + +       F 
Sbjct: 239 KVFHARRFEEARSVTFL 255


>gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str.
           Toulouse]
 gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse]
          Length = 640

 Score = 40.7 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 63/202 (31%), Gaps = 9/202 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   + +        +  +A  ++     G    + +   +  +Y   +  I+   
Sbjct: 190 ETAVLSAHLCQIAKHENVKVEDQALSMIARAAEGSARDALSIFDQAIAYS--NGNISAVA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G I NA+        +      +L        L+ ++ 
Sbjct: 248 VRALLGLVDQARIIDLFEFIMKGDIVNALHELRSQYDAGADPLTILTELADFNHLVTRLR 307

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR-IHL 319
              E +       ++ +  ++   K+  +    R W         V ET   +    + L
Sbjct: 308 FTPEIAEDLSLTEVEHSR-SLDFSKKLSVPVLSRNWQMLLKGLQEVSETTRPLQAAEMLL 366

Query: 320 ARKKKYLEKNIIFQTILYIAQT 341
            R     +   + + +  + Q 
Sbjct: 367 IRLAYTADLPTLDEALKKLTQE 388


>gi|237717564|ref|ZP_04548045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229453150|gb|EEO58941.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 171

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 8/172 (4%)

Query: 172 ILLANLGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           +L   +G D      EL+KL          +T + ++  I  +      E+ +A ++  I
Sbjct: 1   MLADFVGSDLSRLTGELEKLIITLPAGQKRVTPEQIEKNIGISKDYNNFELRSALVEKDI 60

Query: 231 YNAIMLADFFLAS-KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPM 289
             A  +  +F  + K     +    L  F     +       +      +          
Sbjct: 61  LKANKIIKYFEENPKTNPIQMTLSLLFSFYSNLMLAYYAPDKSEQGIANMLGLRTP--WQ 118

Query: 290 KRNILQESLRIWNKNLVRETLHKIDHRIHLAR--KKKYLEK-NIIFQTILYI 338
            R+ +  ++R ++     + + +I +    ++  +   +   +I+ + +  I
Sbjct: 119 ARDYMA-AMRKYSGVKTMQIVGEIRYADAKSKGVQNSSMTDGDILRELVFKI 169


>gi|188581065|ref|YP_001924510.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
           BJ001]
 gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
           BJ001]
          Length = 623

 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 51/172 (29%), Gaps = 7/172 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +++           EA   +     G    + + L +          +T   
Sbjct: 212 EADVLSAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVTAAG 269

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G I  A         +      +L        L+ ++ 
Sbjct: 270 VRDMLGLADRSRIVDLFEAAMRGDIPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 329

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESL-RIWNKNLVRETLHKIDHR 316
           ++            ++        +  +   +L R W   ++ + L ++   
Sbjct: 330 LVPGAEADPTLSEAERVRGAQFAGRLPV--RALSRAW--QILLKALPEVQAA 377


>gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU121]
          Length = 423

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 17/165 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITE 203
              L D  +  L      +  +A         GD  ++ N L+              IT 
Sbjct: 161 NRALED-EDRGLNAYSPKVDDDAMTYFSTQSQGDVRSALNALELAVLSASEEDGQRHITL 219

Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Q  KD +           D H   +     +     +  A+      + +      +   
Sbjct: 220 QDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRL 279

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 280 LVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 321


>gi|16117302|dbj|BAB16725.2| hypothetical protein [Macaca fascicularis]
          Length = 596

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 43  PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 94

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 95  D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 146

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 147 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 206

Query: 310 LHKI 313
           + K+
Sbjct: 207 MRKL 210


>gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
 gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
          Length = 423

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 141 SCYPDNKI-HLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSY 194
               D+    L   I +       S     + ++A +       GD  ++ N L+     
Sbjct: 150 PLNQDDIRLALDRAIND--KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLS 207

Query: 195 CL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                  +  IT    KD +           D H   +     +     +  A+      
Sbjct: 208 AHIDEQNERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARL 267

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
           + +      +    +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 268 IEAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322


>gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224]
 gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD   + N L+        D  
Sbjct: 154 EDVRQALTRAIEDDENGLKTYQSKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 562

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++         
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299

Query: 260 LLEKI--HIIKECSNISFEKIIQ 280
            LE++   ++ +       + +Q
Sbjct: 300 QLERMLERVMVDEQFRMLSEEMQ 322


>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax SaI-1]
 gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
          Length = 330

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAI------------------SCYPDNK 147
                +++ +++ + ++  + LR+I E +++V                     SCY    
Sbjct: 111 PPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQG 170

Query: 148 IHLMDLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           I +    ++ L        +I  +A   ++    GD    R  +  L      D +IT +
Sbjct: 171 IPINIKKDKLLYICKSEGINILDDALDKIIETTQGD---LRRAVSILQLCSCIDPMITLE 227

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            V D+        I +II+A     + N        +        +       F
Sbjct: 228 SVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYF 281


>gi|329770458|ref|ZP_08261837.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
 gi|328836313|gb|EGF85979.1| hypothetical protein HMPREF0433_01601 [Gemella sanguinis M325]
          Length = 566

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 88/248 (35%), Gaps = 32/248 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST----- 77
            ++FYG        +   F     +  ++ +    ++ +EI    +   +E+        
Sbjct: 39  AYLFYGPRGTGKTSIAKIFAN--EVNKNEVYQKENVDIIEIDAASNNGVDEVRDIKEAIK 96

Query: 78  --SLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
                 K K+ +I+ +        + L + + +   + I I+               E  
Sbjct: 97  FLPSEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL------------ATTEIH 144

Query: 135 TSVLAI--SCYPDNKIHLM-DLIEESLL----IGQKSISKEAKQILLANLGGDRIASRNE 187
                I   C      +L  + +E+ L       +  I ++A + +     G    + + 
Sbjct: 145 KIPATILSRCQRFEFKNLSVEQLEDRLKYISENERLDIEEDAIKKIATLAKGGLRDAISI 204

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           L ++S+Y      IT +++ ++        I E     +QG +  ++++ + F+A    +
Sbjct: 205 LDQVSNYS---EKITLENILEVTSSISEDSILEFYKYLLQGDVTKSLLMYNDFVAQAKDT 261

Query: 248 HALLHGFL 255
             LL+  +
Sbjct: 262 KLLLNDLI 269


>gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763]
 gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763]
          Length = 391

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD   + N L+        D  
Sbjct: 121 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 180

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 181 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 240

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 241 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 297

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 298 SNSAMSAIDSALSDIR 313


>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
 gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
           factor C4
 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 309

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 62  EIQKNISTFWNEI-NSTSLFSKKKI------ILIENLSTE--KKVLDCLEEIIIKNICNH 112
           E+  +     + +  +   F+++++      I+I + +          +  ++  +    
Sbjct: 68  ELNASDERGIDTVRTTIKSFAQRRVKDCEFKIIILDEADSMTTTAQQAMRRVMEIHSSEC 127

Query: 113 IIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
             I+        N   KI E   +    +      +  ++  ++E        I+ EA  
Sbjct: 128 RFILIC------NVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALD 181

Query: 172 ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIY 231
           +++    GD   S N LQ   +       + + ++  II       IE+++   ++ ++ 
Sbjct: 182 LVVELSDGDMRQSLNILQACIN---SPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVE 238

Query: 232 NAIMLADFFLASKMPSHALLHGFLQ 256
            A+ + D     K     L++ F +
Sbjct: 239 EALEMFDEIWEEKFDPLDLINSFFR 263


>gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gamma and tau [Nakamurella multipartita
           DSM 44233]
 gi|258554122|gb|ACV77064.1| DNA polymerase III, subunits gamma and tau [Nakamurella
           multipartita DSM 44233]
          Length = 743

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 43/124 (34%), Gaps = 1/124 (0%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L  ++E         +      +++   GG    + + L +L +    +  +T +    +
Sbjct: 184 LRTMLERLCEQEGAVVEPAVLPLVIRAGGGSARDTLSMLDQLLAGAGPEG-VTYRSAVAL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++E+++A   G   +     D  + +           LQ+ + L  +  + +
Sbjct: 243 LGVTDAALLDEVVDALAAGDGGSVFAAVDRVIEAGHDPRRFATDLLQRLRDLVILSAVPD 302

Query: 270 CSNI 273
               
Sbjct: 303 AGAK 306


>gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC
           12228]
 gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 426

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           YP ++  +   ++ ++       S     + ++A +       GD  ++ N L+      
Sbjct: 152 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 211

Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                 +  IT    KD +           D H   +     +     +  A+      +
Sbjct: 212 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 271

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            +      +    +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 272 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 325


>gi|322382239|ref|ZP_08056152.1| DNA polymerase III subunits gamma and tau-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153820|gb|EFX46188.1| DNA polymerase III subunits gamma and tau-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 559

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                 +  EA   +     G    + + L + SSY      IT   V  +         
Sbjct: 174 KQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAAGS--ITVADVVAMTGGLASEQF 231

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           E +  +  +  +  ++ + D F+     +   +   +  F+ L  + ++ E +
Sbjct: 232 ERLARSVKEKDLGTSLEIIDSFMQEGKSADKCMESLILYFRDLLMVRLVPESA 284


>gi|300118105|ref|ZP_07055853.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1]
 gi|298724416|gb|EFI65110.1| hypothetical protein BCSJ1_09403 [Bacillus cereus SJ1]
          Length = 536

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 150 LMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  +I+            I+ EA  ++     G    + + + ++ +Y   +  +T +HV
Sbjct: 182 LQAMIDRLKFISHDQGIRITDEALHLISQLAEGGLRNALSIMDQVIAYATNN--VTIEHV 239

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
             ++    +  IE++I+   +  + + +      L  K     L
Sbjct: 240 AIVVGKVAIQDIEKLIHYITEKDLTSTLDSLQTILERKQADFFL 283


>gi|207108595|ref|ZP_03242757.1| DNA polymerase III subunit delta [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 238

 Score = 40.3 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 21/223 (9%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
                YG     I   I            D  + +   +   +  I+T   +    SLF 
Sbjct: 16  KAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQ---DSLFG 72

Query: 82  KKKIILIE-NLSTEKKVLDC---LEEIIIKNICNHIIIIKSNEIKKNNT--------LRK 129
              +++++ + +  KK  +    L    ++   ++ +II     K + T        + K
Sbjct: 73  GSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSEIIVK 132

Query: 130 IAEKFT---SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
             +K       + +  +       +  ++E        IS      L      D   S N
Sbjct: 133 FFQKSPLKDEAICVRFFMPKTWESLKFLQERANFLHLDISSHLLNALFETNNEDLGVSFN 192

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
           +L KL+        IT + ++++  +   + ++++I      K
Sbjct: 193 DLDKLAVL---KAPITLEDIQELSSNAGDMDLQKLILGLFLKK 232


>gi|328951662|ref|YP_004368997.1| DNA polymerase III, subunits gamma and tau [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451986|gb|AEB12887.1| DNA polymerase III, subunits gamma and tau [Marinithermus
           hydrothermalis DSM 14884]
          Length = 563

 Score = 40.3 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 42/140 (30%), Gaps = 5/140 (3%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
            +  +   +++        I+ EA  ++     G    + + L +L    L    +T   
Sbjct: 177 TEEEIAGKLQQITRAEGLEIAPEALALVARMADGAMRDAESILDRLL--ALGKNPVTLAD 234

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
            +  +       I+++  A  +G I  A+  A         +  L     +  +      
Sbjct: 235 AEAALGLPPQHRIQQLAEALARGAIEQALAEARQLYREGYSARTLTEQVAEALRSGLYAR 294

Query: 266 IIKECS---NISFEKIIQKT 282
           +          +  ++I   
Sbjct: 295 LGLGSGPDLAANEAQVIAAL 314


>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
 gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
          Length = 608

 Score = 40.3 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+       Q  I+ +A  ++     G    + + L +           T   
Sbjct: 198 EPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 255

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 256 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDL 304


>gi|253317220|ref|ZP_04840433.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 361

 Score = 40.3 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD  ++ N L+        D  
Sbjct: 91  EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKD 150

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 151 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 210

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 211 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 267

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 268 SNSAMSAIDSALSDIR 283


>gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis
           RP62A]
 gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A]
 gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU045]
 gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU028]
          Length = 423

 Score = 40.3 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           YP ++  +   ++ ++       S     + ++A +       GD  ++ N L+      
Sbjct: 149 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 208

Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                 +  IT    KD +           D H   +     +     +  A+      +
Sbjct: 209 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 268

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            +      +    +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 269 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322


>gi|291296760|ref|YP_003508158.1| DNA polymerase III subunit delta [Meiothermus ruber DSM 1279]
 gi|290471719|gb|ADD29138.1| DNA polymerase III, delta subunit [Meiothermus ruber DSM 1279]
          Length = 312

 Score = 40.3 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
           A   EL+KL         IT + V+ ++     +   +++ +  +GK   A  +A   L 
Sbjct: 153 ALDQELRKLCL---ASPPITLEKVQALVALDTPISGFDLVRSITEGKATQAFKVARELLE 209

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
                  +L     ++  + +   + +   +  E +    
Sbjct: 210 RGEDPLRILGALSWQYVRVARAWALLQDDPLMGEGVAASA 249


>gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102]
 gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819]
 gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796]
 gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102]
 gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction
           resolvase [Staphylococcus aureus 04-02981]
 gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819]
 gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796]
 gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 424

 Score = 40.3 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE+    L   Q  I ++A         GD   + N L+        D  
Sbjct: 154 EDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1]
 gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1]
          Length = 438

 Score = 40.3 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 78/266 (29%), Gaps = 50/266 (18%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        L     +     +    + V     EI+  I    + +N    F  K
Sbjct: 53  IILYGPPGSGKTTLATIISEMTEANFVK-INAVSAGVAEIRTEIKKARDNLN----FYGK 107

Query: 84  KIIL-------IENLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           + I        ++  + +  +L+ +E+    +I     N    +    +   + + ++AE
Sbjct: 108 RTIFFIDEIHSLKRGAQQDCLLEAVEKGEVTLIGATTENPYFELN-GALLSRSRIFQLAE 166

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASR 185
                         +  L  L++ +L   +         ++++A +  +   GGD     
Sbjct: 167 H------------TEDDLYRLVQRALKDEEQGLGMYRVKLAEDAMKHFIEMSGGDGRNVL 214

Query: 186 NELQKLSSYCL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIY 231
           N L+               IT +  +D             D H   I   I +       
Sbjct: 215 NALELAVLSTAPTEDGYRHITLEVAEDSTQQRYIRYDKSGDNHYDVISAFIKSIRGSDPD 274

Query: 232 NAIMLADFFLASKMPSHALLHGFLQK 257
            A+       A+      ++   +  
Sbjct: 275 AALHYYARMTAAGEDPRFIVRRLIVH 300


>gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus epidermidis FRI909]
          Length = 423

 Score = 40.3 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 141 SCYPDNKI-HLMDLIEESLLIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSY 194
               D+    L   I +       S     + ++A +       GD  ++ N L+     
Sbjct: 150 PLNQDDIRLALDRAIND--KERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLS 207

Query: 195 CL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                  +  IT    KD +           D H   +     +     +  A+      
Sbjct: 208 AHIDEQNERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARL 267

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
           + +      +    +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 268 IEAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322


>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
           DNA binding protein and ATPase t [Pichia pastoris GS115]
 gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
           DNA binding protein and ATPase t [Pichia pastoris GS115]
 gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Pichia pastoris CBS 7435]
          Length = 332

 Score = 40.3 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 33/272 (12%)

Query: 10  IQKSTKNLFLSHFVFIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQK 65
           ++K  ++  L H   +FYG    G    ++   K+     Y +   ++ LNA +   I  
Sbjct: 36  VRKFVQDGRLPH--LLFYGPPGTGKTSTIMALAKEIYGKNYRN--MVLELNASDDRGISV 91

Query: 66  NISTFWNEINSTSLFS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKK 123
                 N  ++  +FS   K+I+++       V    L  +I K   N    +       
Sbjct: 92  VRDQIVNFASTRQIFSNGFKLIILDEADAMTNVAQNALRRVIEKFTKNTRFCV------- 144

Query: 124 NNTLRKIAEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG 178
              L   A K    L   C      P ++  +   I + +     +I  +A Q LL    
Sbjct: 145 ---LANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINIDDDALQSLLKLSK 201

Query: 179 GDRIASRNELQKLSSYCL---EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
           GD   + N LQ  + +         IT   + + +       IE +++  IQ     A  
Sbjct: 202 GDMRKALNVLQ--ACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDTIIQENWEAAFT 259

Query: 236 LADFF-LASKMPSHALLHGFLQKF--QLLEKI 264
           + +   L        L++GF+       LEK+
Sbjct: 260 IMNRLKLEKGYALIDLVNGFVDILGGYQLEKM 291


>gi|294495084|ref|YP_003541577.1| replication factor C large subunit [Methanohalophilus mahii DSM
           5219]
 gi|292666083|gb|ADE35932.1| replication factor C large subunit [Methanohalophilus mahii DSM
           5219]
          Length = 489

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 82  KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFT 135
           +K++I+++     + S ++     +  +I K   N  II+ +N++   ++TLR      +
Sbjct: 102 QKRLIILDEADNMHGSADRGGTRAITNVIKK--SNQPIILIANDLYALSSTLR------S 153

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             + I   P  +  ++  +++   +          + +  N GGD    R+ ++ L +  
Sbjct: 154 HCVNIKFNPIPQRSILPALKKICKMEGIMCGTGVLEKIAENTGGD---LRSAIKDLQATA 210

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            +   I    V     DT    I +++    +G+
Sbjct: 211 TDKKEIEVADVTTAERDTKE-SIFKVLTKVFKGR 243


>gi|305681162|ref|ZP_07403969.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659367|gb|EFM48867.1| Holliday junction DNA helicase RuvB [Corynebacterium matruchotii
           ATCC 14266]
          Length = 365

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITE 203
           +   L  ++  +  I    I  +A   + +   G    +   L+++  Y        I  
Sbjct: 211 DTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHIDL 270

Query: 204 QHVKD--IICDTHVLYIEEIINATIQGKIYN 232
           Q V+   I+ D   + ++ +  A +   I  
Sbjct: 271 QAVRAALIVFDVDAMGLDRLDRAVLTALIKG 301


>gi|225021303|ref|ZP_03710495.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946036|gb|EEG27245.1| hypothetical protein CORMATOL_01322 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 365

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITE 203
           +   L  ++  +  I    I  +A   + +   G    +   L+++  Y        I  
Sbjct: 211 DTPDLTQVVSRAAKIIGVGIDPDAAVEIASRSRGTPRIANRLLRRVRDYADVHGTGHIDL 270

Query: 204 QHVKD--IICDTHVLYIEEIINATIQGKIYN 232
           Q V+   I+ D   + ++ +  A +   I  
Sbjct: 271 QAVRAALIVFDVDAMGLDRLDRAVLTALIKG 301


>gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU144]
          Length = 423

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 143 YPDNKIHLMDLIEESL--LIGQKS-----ISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           YP ++  +   ++ ++       S     + ++A +       GD  ++ N L+      
Sbjct: 149 YPLDQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSA 208

Query: 196 L----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                 +  IT    KD +           D H   +     +     +  A+      +
Sbjct: 209 HIGEENERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLI 268

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
            +      +    +  +   E + +    +       IQ  E+   P  R  L +++
Sbjct: 269 EAGDLPTIVRRLLVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAV 322


>gi|314959377|gb|EFT03479.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL002PA1]
          Length = 948

 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 12/203 (5%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L      D  ++ +    +
Sbjct: 280 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGAADGHVSYEQAAAL 338

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L    I+  
Sbjct: 339 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDLV---IVSA 395

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE-- 327
             +     +I      + P +   L   +  +    +      +   +   R        
Sbjct: 396 GPDACRSGLID-----VSPEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTAPRLH 450

Query: 328 -KNIIFQTILYIAQTACKNNNFY 349
            + +  + +L  A T  +  +  
Sbjct: 451 LELMCSRILLPGADTDGRGIHAR 473


>gi|325092542|gb|EGC45852.1| ran-binding protein [Ajellomyces capsulatus H88]
          Length = 883

 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138
           F + + + +      KK        +  N      +   + + +   L   AE + T++ 
Sbjct: 499 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 555

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +   PD    + +L+ + L  G      E  +     +  +  A +N  +    YC   
Sbjct: 556 NLHSSPDESTFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 610

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
               E+ V  I         ++I  A + G I  A+   +   A+  +           +
Sbjct: 611 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 660

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283
           KF  +E +    E   IS     Q   
Sbjct: 661 KF--IEMMRRCTEPQPISPSTSKQAAR 685


>gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 422

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 18/190 (9%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---EDILITE 203
              L D  +  L      + ++A +       GD  ++ N L+          E   IT 
Sbjct: 161 NRALNDS-QRGLANYHPKVDEDALEYFATQSQGDVRSALNALELAVLSASVENEIRHITL 219

Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
           Q  KD +           D H   +     +     +  A+      + +      +   
Sbjct: 220 QDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRL 279

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHK 312
            +  +   E + +    +       IQ  E+   P  R  L +++   +        +  
Sbjct: 280 LVISY---EDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAVIELSLSPKSNSAITA 336

Query: 313 IDHRIHLARK 322
           ID  +   RK
Sbjct: 337 IDSALSDIRK 346


>gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 438

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 41/259 (15%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            IFYG   G          K I+ T    F  +       +          +   ++ K+
Sbjct: 55  VIFYGP-PGTGK---TTLAKVIANTTSAEFKQINATVAGKKDMEEVVKEAKDMQGMYGKR 110

Query: 84  KIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLR-KIAEK 133
            I+ I+     N   +  +L  +E+    +I     N    +    + ++     K  EK
Sbjct: 111 TILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGALLSRSAVFELKPLEK 170

Query: 134 FTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
                      D KI L   +E+    L      I +EA + L    GGD  ++ N ++ 
Sbjct: 171 ----------EDIKILLRRAVEDEEKGLGSFGAKIEEEALEFLADMSGGDARSALNAIEL 220

Query: 191 LSSYCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIML 236
                         IT +   + I           D H   I   I +        A+  
Sbjct: 221 GVLTTERSEDGIIHITLETASECIQKRVVNYDKKGDNHYDIISAFIKSMRGSDPDAAVFY 280

Query: 237 ADFFLASKMPSHALLHGFL 255
               L +      +    +
Sbjct: 281 LAKMLYAGEDVKFIARRIM 299


>gi|55378501|ref|YP_136351.1| replication factor C large subunit [Haloarcula marismortui ATCC
           43049]
 gi|57013000|sp|Q5V1F7|RFCL_HALMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|55231226|gb|AAV46645.1| replication factor C large subunit [Haloarcula marismortui ATCC
           43049]
          Length = 508

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 71/245 (28%), Gaps = 26/245 (10%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYG-SDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++   ++K  +         I YG    G            ++     P   +  +    
Sbjct: 20  KARDALKKWAETWDDHREAVILYGSPGIGK-----TSAAHALANDMEWPTIELNASDSRT 74

Query: 64  QKNISTFWNEINSTSLF----SKKKIILIENL----STEKKVLDCLEEIIIKNICNHIII 115
           +  I+    E   +         +++++++          +        ++K     +I+
Sbjct: 75  KDVINRVAGEAAKSGTLTAGGGGRRLVIMDEADNIHGNADRGGARAITALVKEASQPMIL 134

Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
           I +   + +N LR       +   I     +   ++ ++ +           +A Q L  
Sbjct: 135 IANEYYEMSNGLRN------NCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAE 188

Query: 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI--QGKIYNA 233
               +    R  ++ L +       +T   V     DT    I E ++  +   G     
Sbjct: 189 ---QNSGGLRGAVKDLQAIAETTERLTADDVVTGERDTTE-GIFEYLDVVLKEAGAQDAL 244

Query: 234 IMLAD 238
               D
Sbjct: 245 EASYD 249


>gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 476

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 18/182 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +++ +A        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 215 EKGLGEYAVTVTDDALHHFANASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 274

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   +     +     +  A+      + +     ++    L     
Sbjct: 275 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG-DLQSIGRRLL--IMA 331

Query: 261 LEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIHL 319
            E I +    +       I+  E+   P  R  +    + +            +D  +  
Sbjct: 332 YEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALQD 391

Query: 320 AR 321
            R
Sbjct: 392 LR 393


>gi|167465485|ref|ZP_02330574.1| DNA polymerase III gamma and tau subunits [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                 +  EA   +     G    + + L + SSY      IT   V  +         
Sbjct: 125 KQEGIHVEDEALHYIGRLSDGGMRDALSILDQASSYAAGS--ITVADVVAMTGGLASEQF 182

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
           E +  +  +  +  ++ + D F+     +   +   +  F+ L  + ++ E +
Sbjct: 183 ERLARSVKEKDLGTSLEIIDSFMQEGKSADKCMESLILYFRDLLMVRLVPESA 235


>gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170]
          Length = 659

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L         +    I+  A  ++     G      + L +          ++E  V
Sbjct: 220 AAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAI--AHGGGTVSEAQV 277

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            +++       I ++++A + G+I  ++ L D   A       ++   L     + ++ +
Sbjct: 278 AEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLVHWMTRVKV 337

Query: 267 IKECSNISFEKIIQKTE 283
           +   +  +     ++T 
Sbjct: 338 VPVSAEDAAVPEAERTR 354


>gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
           anaerobius 653-L]
 gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
           anaerobius 653-L]
          Length = 569

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 150 LMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           L  L+++           IS +A +++  N  G    S + L K  S+   +  I+ + V
Sbjct: 178 LDTLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSFS--NGPISMEEV 235

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            D++       +  +  + I+  +  ++ L D +         L+      F+ +  + I
Sbjct: 236 LDLLGAAAPGQLISLSESIIESDVARSMKLVDDYFMWGKDIRLLVEDLTSVFRSMMMMKI 295

Query: 267 IKECSNISFEKIIQKTEKNIIPM---KRNILQESLRIWNKNLVRETLHKIDHRI 317
             E  ++            +      +  +L++S +  +   +   L+ +   I
Sbjct: 296 FNEADSV------------VEFNEEYRNKLLEKS-KSVDTEEIIRILNLLSEAI 336


>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
 gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
           strain H]
          Length = 330

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVLAI------------------SCYPDNK 147
                +++ +++ + ++  + LR+I E +++V                     SCY    
Sbjct: 111 PPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQG 170

Query: 148 IHLMDLIEESL---LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           I +    E+ L        +I  +A   ++    GD    R  +  L      D +IT +
Sbjct: 171 IPIDVKKEKLLYICKSEGINILDDALDKIIETTQGD---LRRAVSILQLCSCIDPMITLE 227

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            V D+        I +II+A     + N        +        +       F
Sbjct: 228 SVLDVSGLPADDIISKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYF 281


>gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
 gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
           NCFD 2020]
          Length = 558

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 55/186 (29%), Gaps = 5/186 (2%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   +   L +      +EA  ++     G    + + L + +     D  IT    +
Sbjct: 180 KDIKAHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILDQ-ALSLSPDDQITLSIAE 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           +I     +L +++ +   I  +   A+   +    +           L  F+ L  +   
Sbjct: 239 EITGSISILALDDYVANIINQEAQAALSNLETIFDNGKSMSRFATDLLAYFRELLMVQSG 298

Query: 268 KECSNISFEKIIQKTEK-NIIPMKRNILQES---LRIWNKNLVRETLHKIDHRIHLARKK 323
            E S  +             I     I+ +    ++  +   +   +  I+       + 
Sbjct: 299 AESSYQTEHFADNLAVPRETIFQMIAIITKHVPEIKRGSHPRIYAEMMTIELAHLSPVQN 358

Query: 324 KYLEKN 329
              + N
Sbjct: 359 SASDDN 364


>gi|332980764|ref|YP_004462205.1| DNA polymerase III subunits gamma and tau [Mahella australiensis
           50-1 BON]
 gi|332698442|gb|AEE95383.1| DNA polymerase III, subunits gamma and tau [Mahella australiensis
           50-1 BON]
          Length = 549

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  +++ +   L         EA Q++  +  G    + + L +  S+C  D  I    V
Sbjct: 180 EQDMVERMRVILTATGAHAEDEALQLIARSAQGAMRDALSMLDQALSFC--DGNIGYTDV 237

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            D++  +   ++  +++A I G    A+ L D  +       AL+       + L  +  
Sbjct: 238 LDMLGASGTDFVAGLVDAVIAGDDGGALSLIDQAVDQGRDLTALVREIAWYVRDLMIVKS 297

Query: 267 IKECSNI 273
            ++   +
Sbjct: 298 CRQPETM 304


>gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 453

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII- 210
            +I+   L G  S+S EA + L+A  GGD   +   L+  +       +I    V+  I 
Sbjct: 188 AVIDPRGLNGAVSLSDEAARHLVAVAGGDARRALTALEASADATEAGGVIEVADVEAAID 247

Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                     D H       I +     +  A+      +++      +    +      
Sbjct: 248 RAAVRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMISAGEDPRFIARRLMIHASED 307

Query: 262 EKIHIIKECSN-ISFEKIIQKTEKN 285
             +         ++  +++Q     
Sbjct: 308 IGMADPMALQTAVAAAQVVQMVGMP 332


>gi|76788760|ref|YP_327846.1| hypothetical protein CTA_0051 [Chlamydia trachomatis A/HAR-13]
 gi|237802482|ref|YP_002887676.1| hypothetical protein JALI_0461 [Chlamydia trachomatis B/Jali20/OT]
 gi|237804397|ref|YP_002888551.1| hypothetical protein CTB_0461 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167290|gb|AAX50298.1| hypothetical protein CTA_0051 [Chlamydia trachomatis A/HAR-13]
 gi|231272697|emb|CAX09600.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273716|emb|CAX10494.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
           +E QKL     +   I    ++  +     + + ++ +A ++     A  L    ++   
Sbjct: 182 SEFQKLICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMG 241

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
                +  FL+  Q L  +  + E S     +I     + 
Sbjct: 242 EEPLAILSFLRS-QYLLGLRAVAEQSKERKTQIFIAAGEP 280


>gi|302039032|ref|YP_003799354.1| hybrid sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607096|emb|CBK43429.1| Hybrid sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 25/157 (15%)

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSH-----ALLHGFLQKFQ 259
           HV + I D      +E        +    +       A            ++    +  Q
Sbjct: 108 HVIETIVDVTKRKQDEQSL-----RQSQKMEALGRLAAGIAHDFNNLLMVVIGHAQRVAQ 162

Query: 260 LL--EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR- 316
            L     H   E    +  +    T+K +   +R +L++  R    N +   +  I  R 
Sbjct: 163 QLGSHPCHHEVEMIGQAGSRAAALTKKLLTFSRRQVLEQ--RDVPLNTLIRDMEDILRRL 220

Query: 317 ---------IHLARKKKYLEKNI-IFQTILYIAQTAC 343
                    +  ++    L   + I Q +L +A  A 
Sbjct: 221 IGEQIQTVIVLDSKAGHVLGDPVQIEQVLLNLALNAR 257


>gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
 gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 19/127 (14%)

Query: 147 KIHLMDLIEESLLIG-----QKSISKEAKQILLANLGGDRIASRNELQKLSSYC-LEDIL 200
              +  +++ ++          ++  EA++ L+   GGD   +R  L  L +     D  
Sbjct: 184 DADIASVVDRAVSSERGLNGSVTLEPEAREQLVTLAGGD---ARRALTYLEAAAEGADGT 240

Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           IT   V   +           D H   I   I +     +  A+      + +      +
Sbjct: 241 ITADVVSRSVDRAVVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMIEAGEDPRFI 300

Query: 251 LHGFLQK 257
               +  
Sbjct: 301 ARRLVIH 307


>gi|260905315|ref|ZP_05913637.1| DNA polymerase III, subunits gamma and tau [Brevibacterium linens
           BL2]
          Length = 1148

 Score = 40.0 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 63/194 (32%), Gaps = 16/194 (8%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L + +E+        ++K    +++   GG    + + L +L +    D  +      
Sbjct: 182 EALGNYMEDLCNREGVQVAKGVLPLVVRAGGGSVRDTLSVLDQLIAGSGPDG-VDYAGAI 240

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIH 265
            ++  T    + +I++A   G         +  + S            ++F   LLE++ 
Sbjct: 241 ALLGYTPDSLLSDIVDAFSAGDGGGVYRAVERVIESGQDP--------RRFVEDLLERMR 292

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH--RIHLARKK 323
            +   +  +  +        + P +   L    R + +  +      ++           
Sbjct: 293 DLIVIN--AAPEAAHAFLPEVPPDRLERLTLQARGFGQGELSRAADLLNQGLTEMSGATS 350

Query: 324 KYLE-KNIIFQTIL 336
             L+ + I  + +L
Sbjct: 351 PRLQLELICARILL 364


>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 45/174 (25%), Gaps = 24/174 (13%)

Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEK---------------------FTSVLAISCYP 144
                II+ +++ +  +  + LR++ E                       +        P
Sbjct: 124 PPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKP 183

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
            +   L + +          I   A   L A  GGD   +   L +          IT  
Sbjct: 184 LDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAIT-LMQCCFRLNGSDPITAD 242

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
            V           I ++      G             AS   +  +L    ++F
Sbjct: 243 DVVAAAGVVPDDMIRKLWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQF 296


>gi|148266337|ref|YP_001233043.1| DNA polymerase III, subunits gamma and tau [Geobacter
           uraniireducens Rf4]
 gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4]
          Length = 579

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             ++D +   +   Q S+S +A  ++     G    S + L ++ ++C +   +T++ V 
Sbjct: 181 QKIVDRLRYIVDQEQVSVSDKALAVVARKGDGSMRDSLSTLDQVLAFCGQ--TVTDEDVA 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++       + E   +        A+ +     +            +  F+ +  +  +
Sbjct: 239 GLLGVVDRRLLLEASQSIFARDSRAALEIVKRVDSFGYNMRQFCQELIDHFRNITILRTV 298

Query: 268 KECSNI 273
            + ++I
Sbjct: 299 VDAADI 304


>gi|5262681|emb|CAB45771.1| hypothetical protein [Homo sapiens]
          Length = 697

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 56  PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 107

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 108 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 159

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 160 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 219

Query: 310 LHKI 313
           + K+
Sbjct: 220 MRKL 223


>gi|304320347|ref|YP_003853990.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
           HTCC2503]
 gi|303299249|gb|ADM08848.1| DNA polymerase III subunits gamma and tau [Parvularcula bermudensis
           HTCC2503]
          Length = 607

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL--SSYCLEDILITE 203
           +   L   +       + +ISKEA  ++     G   + R+ L  L  +        I  
Sbjct: 194 DITSLSAHLAGIAEKEEAAISKEALDMIAQAAEG---SVRDALSLLDQALVQKAGEAIGA 250

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             ++D++         +++ A + G    A+ L          +  ++   L    LL +
Sbjct: 251 ADIRDMLGLVDRTQTWDLLGAAMAGDAKTALRLFREQYDGGADAGQVMRDLLSLTHLLTR 310

Query: 264 IHI---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
             +          + E   ++ +     +    L    R W+   + + L ++ + 
Sbjct: 311 TLVAGDEAAAHGQAGEADTERAQAMAHGVPLPALT---RSWSL--LMKALEEVQNA 361


>gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
           19.5.1]
 gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
           19.5.1]
          Length = 503

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 98/266 (36%), Gaps = 31/266 (11%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-LEIQKNI 67
            ++K+ +N  ++H  +IF+G              K ++   HD        + + +  N 
Sbjct: 29  VLKKAIENQSIAH-AYIFFGPRGTGKTTTARILAKALNCLSHDDKPCGKCESCIAVDNNS 87

Query: 68  STFWNEINSTSLFSKKKIILIENLST-------------------EKKVLDCLEEIIIKN 108
                EI++ S     +I  I + ++                    ++  + L + + + 
Sbjct: 88  HMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHYKVYIVDEFHMLTREAFNALLKTLEEP 147

Query: 109 ICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISK 167
             + + I+          L K+ E   +     +  P ++  +++ ++  L   +K+ + 
Sbjct: 148 PEHIVFIL------ATTNLEKVPETILSRCQVFTFKPLSEGQIVEYLQRILKEEKKTYTV 201

Query: 168 EAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
           EA +I+     G    + N L++   +      I E +VK+I+      Y++  + A + 
Sbjct: 202 EALKIIAKAAKGGMRDAVNLLERALVF---GEKIEEDNVKNILGILPEEYLKSYLVAILN 258

Query: 228 GKIYNAIMLADFFLASKMPSHALLHG 253
           G     I L++          +++  
Sbjct: 259 GDSDEIIALSENIERLGYSHDSVIRQ 284


>gi|257387805|ref|YP_003177578.1| replication factor C large subunit [Halomicrobium mukohataei DSM
           12286]
 gi|257170112|gb|ACV47871.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 497

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 57/153 (37%), Gaps = 18/153 (11%)

Query: 81  SKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKF 134
           + +++++++         ++     +  ++ +   N  +I+ +NE  + +N LR   +  
Sbjct: 97  AGRRLVVMDEADNIHGNADRGGARAITSLVKE--ANQPMILIANEFYEMSNGLRNACDD- 153

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
                I      K  ++ ++ + L   + +   EA   +     GD    R  ++ L + 
Sbjct: 154 -----IEFRDVGKRSIVPVLRDVLRQEEIAFDDEALTEIAEMNDGD---LRGAIKDLQAL 205

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227
                 +    V     DT    I + ++  ++
Sbjct: 206 AEGRDHLAADDVVTGERDTTE-GIFDYLDLLLK 237


>gi|74316533|ref|YP_314273.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056028|gb|AAZ96468.1| DNA polymerase subunits gamma and tau [Thiobacillus denitrificans
           ATCC 25259]
          Length = 581

 Score = 40.0 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 19/67 (28%)

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                 I    V+ ++      Y+ ++++A   G     +  A       +   A L   
Sbjct: 235 AYGGGRIEAAAVEAMLGTVRRDYLFDLLDALAAGDGDALMTQARLLAERGIAFDATLQDL 294

Query: 255 LQKFQLL 261
                 L
Sbjct: 295 GNLLTQL 301


>gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum
           CIP 105476]
 gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP
           105476]
          Length = 646

 Score = 40.0 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 65/205 (31%), Gaps = 15/205 (7%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   + +     +  +  +A  ++     G    + +   +       +  ++   
Sbjct: 190 EAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAI--AHSNGNVSAAE 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G + +A+        +      +L        L+ ++ 
Sbjct: 248 VRTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELADFNHLVTRLR 307

Query: 266 ---IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW-----NKNLVRETLHKIDHR- 316
               I E  +++ E+ ++  +      K+  +    R W         V +T   +    
Sbjct: 308 FTPEIVEDFSLTEEQRLRSLD----FSKKLSVPVLSRNWQMLLKGLQEVNQTARPLQATE 363

Query: 317 IHLARKKKYLEKNIIFQTILYIAQT 341
           + L R     +   + + +  + Q 
Sbjct: 364 MLLIRLAHTADLPTLDEALKKLTQE 388


>gi|110636381|ref|YP_676589.1| DNA polymerase III subunits gamma and tau [Mesorhizobium sp. BNC1]
 gi|110287365|gb|ABG65424.1| DNA polymerase III, tau subunit [Chelativorans sp. BNC1]
          Length = 600

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 151 MDLIEESLLI----GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
             LI++ L             +A  ++     G    +++   +          +T + V
Sbjct: 195 SGLIKQHLAHIGDLEGVDADSDALAMIARAAEGSMRDAQSIFDQAI--AHSSGKVTAETV 252

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           +D++       + ++    ++G +  A+        +     A+L    +   L+ ++  
Sbjct: 253 RDMLGLADRARVIDLFEHLMKGDVAAALAEYRAQYDAGADPAAVLTDLAEFNHLVTRMRF 312

Query: 267 IKECSN 272
           + + +N
Sbjct: 313 VPDAAN 318


>gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1]
 gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           HPAG1]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L +++L + +K I  +AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDKLCDKALALLKKQIEPDAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKT 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           ++ +           D     +   +  +++G     +I      +A       +    
Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265


>gi|74185604|dbj|BAE32694.1| unnamed protein product [Mus musculus]
          Length = 393

 Score = 39.6 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 53/175 (30%), Gaps = 15/175 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L++ + E        +      +++   GG    S + L +L    + D  ++ +    +
Sbjct: 216 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSVRDSLSVLDQL-LGGVADGHVSYEQAAAL 274

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++EI++A   G  +      D  +             L++ + L        
Sbjct: 275 LGYTPEALLDEIVDAFAAGDAHQVFATIDKVIEVGQDPRRFAEDLLRRMRDL-------- 326

Query: 270 CSNISFEKIIQKTEKNII---PMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
              +    +       +I   P +   L   +  +    +      +   +   R
Sbjct: 327 ---VIVSAVPDACRSGLIDVSPEQATRLAHQVSGFGAGELTRAAEVLATGLTNMR 378


>gi|254560987|ref|YP_003068082.1| DNA polymerase III, tau and subunit gammas [Methylobacterium
           extorquens DM4]
 gi|254268265|emb|CAX24200.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
           extorquens DM4]
          Length = 626

 Score = 39.6 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +++           EA   +     G    + + L +          ++   
Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G +  A         +      +L        L+ ++ 
Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++            ++    +    R  ++   R W   ++ + L ++   
Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376


>gi|222053486|ref|YP_002535848.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32]
 gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. FRC-32]
          Length = 576

 Score = 39.6 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             ++D +   +   + SIS +A  I+     G    S + L ++ ++C E+  + +  V 
Sbjct: 181 QKIVDRLRYIVDQEKVSISSDALAIVARKGDGSMRDSLSTLDQVLAFCGEN--VADDDVA 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++       + E   A       + + +     +            +  F+ L  +  I
Sbjct: 239 SLLGVVDRRLLLEASQAVFSRDNKSVLEIVKQVDSFGYSMRQFCQELIDHFRNLAILRAI 298

Query: 268 KECSNI 273
              S+I
Sbjct: 299 DNASDI 304


>gi|218530155|ref|YP_002420971.1| DNA polymerase III subunits gamma and tau [Methylobacterium
           chloromethanicum CM4]
 gi|218522458|gb|ACK83043.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           chloromethanicum CM4]
          Length = 626

 Score = 39.6 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +++           EA   +     G    + + L +          ++   
Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G +  A         +      +L        L+ ++ 
Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++            ++    +    R  ++   R W   ++ + L ++   
Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376


>gi|294101690|ref|YP_003553548.1| DNA polymerase III delta [Aminobacterium colombiense DSM 12261]
 gi|293616670|gb|ADE56824.1| DNA polymerase III delta [Aminobacterium colombiense DSM 12261]
          Length = 312

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 68/167 (40%), Gaps = 13/167 (7%)

Query: 79  LFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK-----SNEIKKNNTLRKIAEK 133
           LFS+K+++L+EN      + + +         + ++++      S  I K    R    K
Sbjct: 53  LFSEKQMLLVENAENLGVLPESMITFFNSVEESCLVLLVYDGSPSKYIPKEALQRAEILK 112

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 I  +P     L  L+       + ++ KEA  +L+  +  D    R+E++K+++
Sbjct: 113 AEE---IPFWP--SARLRWLLN-FCGDRRINLEKEAAALLIDWIE-DGEELRSEIEKIAA 165

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
           +  +   +T + V+ +  D     +   ++   QG     ++L    
Sbjct: 166 FS-DGQTVTSEMVRALSFDEGRSSMLRFLDGVCQGNRKEILILFPHL 211


>gi|240138441|ref|YP_002962913.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
           extorquens AM1]
 gi|240008410|gb|ACS39636.1| DNA polymerase III, tau and gamma subunits [Methylobacterium
           extorquens AM1]
          Length = 626

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +++           EA   +     G    + + L +          ++   
Sbjct: 211 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 268

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G +  A         +      +L        L+ ++ 
Sbjct: 269 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 328

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++            ++    +    R  ++   R W   ++ + L ++   
Sbjct: 329 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 376


>gi|290968854|ref|ZP_06560391.1| DNA polymerase III, delta subunit [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781150|gb|EFD93741.1| DNA polymerase III, delta subunit [Megasphaera genomosp. type_1
           str. 28L]
          Length = 337

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 35/321 (10%), Positives = 93/321 (28%), Gaps = 46/321 (14%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS--TFWNEINSTSLF 80
           + I YG++  L  E      +   +      +   ++    +++IS       I  T LF
Sbjct: 4   IAIIYGTESYL-RER----HRREFLQACRQRAGADMDIQTAERDISLSRLAEMIGETGLF 58

Query: 81  S--------KKKIILIENLSTEKKVLDC-----LEEIIIKNICNHIIIIKSNEI-KKNNT 126
                    +  ++  ++    +K +       L+ +      N ++  +   + +K+  
Sbjct: 59  CRAAVTICREDTLLRGKHKGASRKKMTAEEEWFLQRLAHFPEENGLLFYREGMLDEKDPF 118

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
            R +           C P +   +M  +         +++ +  Q L       +  S  
Sbjct: 119 FRAL---SALATVWYCPPVSSKEIMRYVNAFFQEQGHTLTAQGTQYLQNLFATWQDISLQ 175

Query: 187 ----ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
               E+Q++      + ++    ++ +        I   ++     K    +        
Sbjct: 176 YIYTEIQRICLQAEAEAVLDVADLQGMFSGAVEKNIFSFLDFFFSRKTAEIVSFFPGLF- 234

Query: 243 SKMPSHALLHGFLQKFQLLEKI--HIIKECSNISFEKIIQKTE--------KNIIPMKRN 292
                   L         L  +  +       +S  + +   +        K I+   + 
Sbjct: 235 ---NPKVFLKSVGAILTQLHILLEYKELTAMGMSERQAVALMQEINKGCNVKGIVWHLKK 291

Query: 293 ILQESLRIWNKNLVRETLHKI 313
                 + W    +RE +  I
Sbjct: 292 KE----KYWTIKELRELIAAI 308


>gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa]
 gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa]
          Length = 1188

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 63/194 (32%), Gaps = 21/194 (10%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++  ++         I K+A +++ +   G    +   L++LS   L    I+   V
Sbjct: 624 DADIIYTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQK-ISVPLV 680

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           ++++       + ++++  +     N +      + + +   AL          L  +  
Sbjct: 681 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLAL-------MSQLATVIT 733

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR-KKKY 325
                +  F K   + +           ++ L   +   +R+ L  +       R     
Sbjct: 734 DILAGSYDFTKERPRRK--------FFRRKPLSKEDMEKLRQALKTLSEAEKQLRMSNDK 785

Query: 326 LEKNIIFQTILYIA 339
           L    +   +L +A
Sbjct: 786 L--TWLTAALLQLA 797


>gi|163851288|ref|YP_001639331.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           extorquens PA1]
 gi|163662893|gb|ABY30260.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
           extorquens PA1]
          Length = 628

 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 51/171 (29%), Gaps = 5/171 (2%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +++           EA   +     G    + + L +          ++   
Sbjct: 213 EADVLAAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAI--AHGAGAVSAAG 270

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       I ++  A ++G +  A         +      +L        L+ ++ 
Sbjct: 271 VRDMLGLADRSRIVDLFEAVMRGDVPAAFAEIRAQYDAGADPAVVLSDLAGFTHLVTRLK 330

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           ++            ++    +    R  ++   R W   ++ + L ++   
Sbjct: 331 LVPGAEADPTLSEAERVR-GVAFAGRLPVRALSRAW--QILLKALPEVQAA 378


>gi|283780299|ref|YP_003371054.1| DNA polymerase III subunits gamma/tau [Pirellula staleyi DSM 6068]
 gi|283438752|gb|ADB17194.1| DNA polymerase III, subunits gamma and tau [Pirellula staleyi DSM
           6068]
          Length = 715

 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 16/195 (8%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++D +             EA  IL     G    S++ L++L SY      IT   V
Sbjct: 219 SQAILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSY--GGKQITVDDV 276

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
              +       I  ++ A        A+   D      +    L        QLL  +  
Sbjct: 277 HRALGTAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAE------QLLGYLRD 330

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK---- 322
                 +           ++       ++     W    +   +  +D  +   R+    
Sbjct: 331 AM----VLSVGASSDMLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHG 386

Query: 323 KKYLEKNIIFQTILY 337
           +  +E  ++    L 
Sbjct: 387 RTLVEVAVVRLCSLG 401


>gi|240280967|gb|EER44470.1| ran-binding protein [Ajellomyces capsulatus H143]
          Length = 670

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138
           F + + + +      KK        +  N      +   + + +   L   AE + T++ 
Sbjct: 286 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 342

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +   PD    + +L+ + L  G      E  +     +  +  A +N  +    YC   
Sbjct: 343 NLHSSPDESSFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 397

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
               E+ V  I         ++I  A + G I  A+   +   A+  +           +
Sbjct: 398 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 447

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283
           KF  +E +    E   IS     Q   
Sbjct: 448 KF--IEMMRRCTEPQPISPSTSKQAAR 472


>gi|229176622|ref|ZP_04304028.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
 gi|228606852|gb|EEK64267.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 172560W]
          Length = 562

 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
 gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
          Length = 596

 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+          I+ +A  ++     G    + + L +           +   
Sbjct: 190 EPEVMIALLRRIADAEGAQITDDALALITRAAEGSARDATSLLDQAI--SHGAGETSAAE 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 248 VRSMLGLADRGRVLDLFDLIMKGDAAGALTELGGQYAEGADPMAVLRDL 296


>gi|311742339|ref|ZP_07716148.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
 gi|311313967|gb|EFQ83875.1| replication-associated recombination protein A [Aeromicrobium
           marinum DSM 15272]
          Length = 455

 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 13/127 (10%)

Query: 144 PDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDIL 200
            D    +   + +   +    +++ +A+  L+   GGD  R  +  E    ++       
Sbjct: 187 ADVTTVVDRAVADERGLAGAVTLTDDARDHLVRLAGGDGRRALTYLEAAAGATTSQGRTA 246

Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           IT       +           D H       I +     +  A+      + +   +  +
Sbjct: 247 ITVDDAALAVDRAAVRYDRQGDQHYDVTSAFIKSIRGSDVDAALHYLARMIEAGEDARFV 306

Query: 251 LHGFLQK 257
               +  
Sbjct: 307 ARRLMIH 313


>gi|228950570|ref|ZP_04112706.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067786|ref|ZP_04201105.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
 gi|229077295|ref|ZP_04209978.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
 gi|228706018|gb|EEL58323.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock4-2]
 gi|228715339|gb|EEL67196.1| DNA polymerase III subunit gamma/tau [Bacillus cereus F65185]
 gi|228809113|gb|EEM55596.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 562

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|229188307|ref|ZP_04315358.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
 gi|228595175|gb|EEK52943.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 10876]
          Length = 562

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|225562608|gb|EEH10887.1| ran-binding protein [Ajellomyces capsulatus G186AR]
          Length = 556

 Score = 39.6 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 80  FSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE-KFTSVL 138
           F + + + +      KK        +  N      +   + + +   L   AE + T++ 
Sbjct: 172 FRELRNVKLYPAVGVKKQPTT---HLKANFGQFPFVYDIDGLMEREKLNVQAEIRATNIS 228

Query: 139 AISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
            +   PD    + +L+ + L  G      E  +     +  +  A +N  +    YC   
Sbjct: 229 NLHSSPDESTFIQELVAQFLAHGGYV---ETARAFAEEVREESRALQNGQETPLRYCQ-- 283

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS--KMPSHALLHGFLQ 256
               E+ V  I         ++I  A + G I  A+   +   A+  +           +
Sbjct: 284 ---AEEDVDAI-------NRQKIRTAILDGDIDKALKFTNASYANVLRDNPQIYFRLRCR 333

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTE 283
           KF  +E +    E   IS     Q   
Sbjct: 334 KF--IEMMRRCTEPQPISPSTSKQAAR 358


>gi|331222505|ref|XP_003323926.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309302916|gb|EFP79507.1| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 310

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 129 KIAEKFTSVLAISCYPD--NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           KI E   S  AI  Y    ++  L  L+ E         +++    L+    GD    R 
Sbjct: 156 KIIEPIQSRCAILRYGKLKDQEVLKRLV-EIATAENVKYAEDGLAALIFTSEGDM---RQ 211

Query: 187 ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
            +  L S       ++ + V  +    H + I+++++A  +G + +A+   +        
Sbjct: 212 AINNLQSTVSGFGFVSAESVFKVCDQPHPVVIQKLLSACEKGDLSDALDQLEHLWEQGYS 271

Query: 247 SHALLHGFLQKFQLLEKI 264
           +  ++   L+  + ++++
Sbjct: 272 ALDIVGTLLKVVKSMDRM 289


>gi|126178781|ref|YP_001046746.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
 gi|150415664|sp|A3CTR4|RFCL_METMJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|125861575|gb|ABN56764.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
          Length = 454

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 54  SLVVLNALE--IQKNISTFWNEINSTSLFSK--KKIILIENLST-----EKKVLDCLEEI 104
            +V LNA +   +  +       ++T+  S   +K+IL++         ++     + EI
Sbjct: 63  EVVELNASDQRTKAALERVAGAGSTTASLSGASRKLILLDEADNLHGQADRGGAKAIVEI 122

Query: 105 IIKNICNHIIIIKSNE---IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIG 161
           I        II+ +N+   + +   L+ + E                 ++  + +     
Sbjct: 123 IAAAQQ--PIILIANDYYSLTRE--LKAVTEPVQFRAL------QARSIVPRLRQICAAE 172

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDIICDTHVLYIE 219
             +    A   +    GGD  A+ N       Y        +    V     D     I 
Sbjct: 173 GVACDPAALDDIANRAGGDMRAAVN-----MLYAAAIGKEHLAAGDVHTSAKDERS-TIF 226

Query: 220 EIINATIQGKIYN 232
           E++ AT +GK   
Sbjct: 227 ELVGATFKGKRDA 239


>gi|71894098|ref|YP_278206.1| hypothetical protein MS53_0074 [Mycoplasma synoviae 53]
 gi|71850886|gb|AAZ43495.1| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 310

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 103/298 (34%), Gaps = 20/298 (6%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            + YGS+  LI                  F+   +  +  +K+ + F+   +   LF +K
Sbjct: 4   ILIYGSENYLIN--------KKIEEIKKKFANYKVTNIYYKKDFAFFYEVYSQNDLFQEK 55

Query: 84  KIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTSVLAIS 141
           ++I + +    +KK ++ L   +  +    ++ +   + I KNN L K+  K        
Sbjct: 56  ELIFVNDFDFKDKKQVEKLINTLSDDNEKIVLFVNYQDFIPKNNLLEKLQSKNK---VFE 112

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
                K   +D I + L      +       L+     +      EL K+     ++  I
Sbjct: 113 FKKLTKKEKVDYIVDYLKSKNAQVKSLDIYYLIEKSTENLEILIKELDKVLI---KENKI 169

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T++ + + I +         +NA      YN        +A       +L        L 
Sbjct: 170 TKEVIDENIFNYSESVEFAFVNALTVRNFYNLYSKYLKEVAQNKSVITILAQIANFLHLS 229

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
             ++ + +    +  +I +  +  I   +   + E L I+N   + + L  I   +  
Sbjct: 230 CSVYYLFQ-QGKNNFEIAKDLK--IHEFRVQKIIEFLNIYNLYNINK-LKDIVSELLE 283


>gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180]
 gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180]
          Length = 391

 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L  ++L + +K I  +AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDKLCTKALALLKKQIEPDAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLKT 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           ++ +           D     +   +  +++G     +I      +A       +    
Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265


>gi|257461422|ref|ZP_05626518.1| DNA polymerase III, delta subunit family [Campylobacter gracilis
           RM3268]
 gi|257441145|gb|EEV16292.1| DNA polymerase III, delta subunit family [Campylobacter gracilis
           RM3268]
          Length = 334

 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 21/266 (7%)

Query: 78  SLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE--IKKNNTLRKIAEKFT 135
           SLF     + I+  S  KK        + K+  N+ +I + N+  I  +    K  E+  
Sbjct: 65  SLFGGSNTLHIKTASLIKKEELRRLIALCKSDANNHLIYELNDSEISVSADFVKEFERNE 124

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
                    +     + L+ +   +     +  A   + A        S +E++K   + 
Sbjct: 125 VRFFKPSGVNEA---IALLAQKCEMCGLFANTAALSRIYAIHNESLSLSASEIEK---FA 178

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
              + +  Q+V  ++     +  +E+ +       +         L        L++ F 
Sbjct: 179 SLGLELNLQNVNLMVYGLSEVSYDELFDKIFSLCDFRVD-FYKMALGGGYNEMELINYFY 237

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI-- 313
           +    + ++H   + +     K +   +          +   ++ +  +    T +KI  
Sbjct: 238 RLIYRIFRLHAYVKINGRFDFKAVLGYQPP------PSVAAQMQRYATSFSTRTFYKIFA 291

Query: 314 ----DHRIHLARKKKYLEKNIIFQTI 335
                     + K    ++ ++   +
Sbjct: 292 HLNDLEFELKSEKNAAKDELLLASFL 317


>gi|206972679|ref|ZP_03233619.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
 gi|206732399|gb|EDZ49581.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH1134]
          Length = 562

 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|313674179|ref|YP_004052175.1| two component, sigma54 specific, transcriptional regulator, fis
           family [Marivirga tractuosa DSM 4126]
 gi|312940877|gb|ADR20067.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Marivirga tractuosa DSM 4126]
          Length = 384

 Score = 39.2 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 27/158 (17%)

Query: 70  FWNEINSTSLFSKKKIIL------IENLSTEKKVLDCLEEIII--KNICNHIIIIKSNEI 121
           F +EI    L ++ K++       I  +  +K +   +  I    KN+ +    I++ E 
Sbjct: 236 FLDEIGDMPLSAQAKVLRALQENKINRVGGDKDIKVDVRIIAATNKNLKDA---IENGEF 292

Query: 122 KKNNTLRKIAEKFTSVLA-ISCYPDNKIHLMDLIEESL-------LIGQKSISKEAKQIL 173
           +++     +  + + +   +    D K  + +L+E+ L          +KSI K+A   L
Sbjct: 293 RED-----LFHRLSVIRINVPPLKDRKDDIPELVEKFLSDIAEEHGSKKKSIDKDALTQL 347

Query: 174 LA-NLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
              N  G+    RN +++L    L    IT Q VK  I
Sbjct: 348 KEYNWSGNIRELRNVVERLI--ILGADTITAQDVKKYI 383


>gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA]
 gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA]
 gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens
           KN400]
          Length = 440

 Score = 39.2 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 22/191 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           E  L     +   +A   +    GGD   + N L+  ++  +++  I  + V++ I    
Sbjct: 185 ERGLGASGLAADDDALAFMAEQSGGDGRVALNTLET-AARLVKNGRIDLESVREAIQKKP 243

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                  + H   I   I +        A+      + +      +L       +++   
Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILR------RMVILA 297

Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319
                 ++    ++     +      +P  R I+ ++            +   ID  +  
Sbjct: 298 SEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAE 357

Query: 320 ARKKKYLEKNI 330
            RK   L   +
Sbjct: 358 VRKSGALPVPL 368


>gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
           SKA53]
 gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
           SKA53]
          Length = 572

 Score = 39.2 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
           + L+ +        IS +A  ++     G    +++ L +           +   V+ ++
Sbjct: 193 IALLRKIATAEGAQISDDALALITRAAEGSARDAQSLLDQAI--SHGAGETSAAQVRAML 250

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                  + ++ +  ++G+  +A+       A      A+L   
Sbjct: 251 GLADRGRVLDLFDMILRGRAADALTELSGQYADGADPMAVLRDL 294


>gi|114326925|ref|YP_744082.1| DNA polymerase III subunits gamma and tau [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315099|gb|ABI61159.1| DNA polymerase III subunit gamma/tau [Granulibacter bethesdensis
           CGDNIH1]
          Length = 686

 Score = 39.2 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNEIKK----------NNTLRKIAEKFTSVLAISCY 143
            +   + L + + +   +   I  + E++K             LR+I             
Sbjct: 182 SRNAFNALLKTLEEPPPHVTFIFATTELRKVPVTVLSRCQRFDLRRI------------- 228

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI---L 200
             +   L       L     S S +A  ++     G   + R+ L  L     ++     
Sbjct: 229 --DAEVLSAHFSRILEQEGVSASPQALALIARAADG---SVRDGLSLLDQAIAQNDPGIP 283

Query: 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
           I+E  V D++       + +++ A + G   +A+ + D   A       +L   L+    
Sbjct: 284 ISEAQVADMLGLADRGMVLDLLEALMAGDTASALAVTDTAHARGADLGMVLQDLLELIHT 343

Query: 261 LEKIHII 267
           L ++  I
Sbjct: 344 LTRLKTI 350


>gi|56476074|ref|YP_157663.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum
           EbN1]
 gi|56312117|emb|CAI06762.1| DNA polymerase III (subunits tau and gamma) [Aromatoleum aromaticum
           EbN1]
          Length = 659

 Score = 39.2 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L          A + L     G    + + L +          + E+ V  ++      
Sbjct: 190 ILEAEGVPFEAPALRHLAKAANGSMRDALSLLDQAI--AHGSGRVEEEQVSHMLGTVGDD 247

Query: 217 YIEEIINATIQGKIYNAIMLADF 239
           ++  +++A   G +   + +AD 
Sbjct: 248 HLYAVLDALAAGDVAGMLAVADR 270


>gi|328906727|gb|EGG26499.1| DNA polymerase III, subunit gamma and tau [Propionibacterium sp.
           P08]
          Length = 968

 Score = 39.2 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
             I +   +   ++       +++  +L   LGG                  D  ++ + 
Sbjct: 310 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 353

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              ++  T    ++EI++A   G  +   +  D  +             L++ + L  + 
Sbjct: 354 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 413

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +        +         P +   L   +  +    +      +   +   R    
Sbjct: 414 AVPDACRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 465

Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349
                + +  + +L  A T  +  +  
Sbjct: 466 PRLHLELMCSRILLPGADTDGRGIHAR 492


>gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705]
 gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705]
          Length = 431

 Score = 39.2 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%)

Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199
            +   I+ +L   +         ++ EA+  L     GD  A+ N  EL  LS+    D 
Sbjct: 154 DISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 213

Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244
            IT              I  DT+     +II+A         +  A+      +A  
Sbjct: 214 TITIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 270


>gi|282856537|ref|ZP_06265812.1| DNA polymerase III, delta subunit superfamily [Pyramidobacter
           piscolens W5455]
 gi|282585658|gb|EFB90951.1| DNA polymerase III, delta subunit superfamily [Pyramidobacter
           piscolens W5455]
          Length = 304

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 70  FWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRK 129
            + E  + SLF+ ++I  +++  +   + D  ++ + +   + I +I S     +  LRK
Sbjct: 44  LFEEALTPSLFAPRRIFEVDDGRSLGVLPDTYKKYVERGDADVIFLIHS-----DKPLRK 98

Query: 130 -IAEKFTSVLAIS----CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIAS 184
            + + F +  ++      Y  N+   +  ++        ++   A  +L   +  D    
Sbjct: 99  ELGDVFETAFSVPYEAAPYWPNQR--VGWLQRLARASGCTLDAAAAALLAEWIE-DEEEL 155

Query: 185 RNELQKLSSYCLEDILITEQHVKDIICDTHV 215
           R+E+ KL+     +  IT Q V  +  D   
Sbjct: 156 RSEVDKLAK-AAPNKRITVQQVNSLSMDEGG 185


>gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 444

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 79/259 (30%), Gaps = 43/259 (16%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ-KNISTFWNEINS-TSL 79
              IFYG        L N              S   LNA+     +I    NE     S+
Sbjct: 53  RSLIFYGPPGTGKTTLANIIANTTKS------SFEKLNAVTSGVTDIKKIVNESKDRLSM 106

Query: 80  FSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT----LRKIAEKF 134
           + K+ I+ I+ +    K   D L   +       II+I +      N     +R +  + 
Sbjct: 107 YGKRTILFIDEIHRFNKSQQDALLPYVE---DGTIILIGA---TTENPYFEVIRPLVSRS 160

Query: 135 TSVLAISCYPDNKIHLMDLI-------EESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
              +    YP +   + +++       +  L   +  I+ +A   ++    GD  A+ N 
Sbjct: 161 ---MIFELYPLSNEDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAALNA 217

Query: 188 LQKLSSYCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNA 233
           ++        D      I  +  ++ I           D H   I   I +        A
Sbjct: 218 IELAFLTTERDENGVINIDIEIAQECIQKKVLKYDKDGDNHYDSISAFIKSMRGSDPDAA 277

Query: 234 IMLADFFLASKMPSHALLH 252
           +      + +      +  
Sbjct: 278 LYWLAKMIYAGEDPLFIAR 296


>gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
 gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
 gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
 gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
          Length = 562

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTSEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  ++        +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 269 ECSNISFEKIIQKT 282
           +  ++    I+   
Sbjct: 300 QLEHMLERVIVDDQ 313


>gi|195052859|ref|XP_001993384.1| GH13779 [Drosophila grimshawi]
 gi|193900443|gb|EDV99309.1| GH13779 [Drosophila grimshawi]
          Length = 1964

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 30/230 (13%)

Query: 124  NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS---KEAKQILLANLGG- 179
            +  L+   E   S+ A          ++  I E+  +    IS    E+   L   LG  
Sbjct: 1238 SAPLQAENEGADSLQA---------SVISRISEAKALQNNRISEMSAESLVWLSHRLGPV 1288

Query: 180  --DRIASRNELQKLSS-YCLEDILI-TEQHV--KDIICDTHVLYIEEIINATIQGKIYNA 233
               R  +RN L+ LS  Y  ++ L+   + V   D+  D   L    I NA + G   +A
Sbjct: 1289 LTARHITRNLLKLLSLCYVGQENLLPEMEAVCCSDLSQDASNLNYFSIANARVVGD-RSA 1347

Query: 234  IMLADFFLASKM--PSHALLHGFLQKFQLL-----EKIHIIKECSNISFEKIIQKTEKNI 286
              + +  ++       + LL  +L     L     +++    E + IS  ++I+     +
Sbjct: 1348 ARVLECLMSIAALYGENFLLVQYLPHISELILLCSKRMTGSLEGAIISSLQLIKYMLPCL 1407

Query: 287  IPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
            +      + E L+    + +   + ++    +L     YL ++++ +  L
Sbjct: 1408 M---DATIMEHLQHILLDAILLPILRLLSSTNLLMPSGYLGRSLLTRKFL 1454


>gi|253581399|ref|ZP_04858625.1| ATPase and helicase [Fusobacterium varium ATCC 27725]
 gi|251836763|gb|EES65297.1| ATPase and helicase [Fusobacterium varium ATCC 27725]
          Length = 303

 Score = 39.2 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 34/183 (18%)

Query: 4   IESHKFIQKSTKNLFLSHF---VFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLV--- 56
           I S++ I+   +N   +      ++FYGSD   + E    F K +   T  D F      
Sbjct: 5   IVSNEEIKTFFRNELKAAKKSGTYLFYGSDTDQLMEFALYFAKGLCCETMEDDFCDTCSV 64

Query: 57  -------VLNALEIQKNISTFWNEI--------NSTSLFSKKKIILIENLSTEKK-VLDC 100
                  + + LE+  + +    +         +S+S    K+I +++++   KK   + 
Sbjct: 65  CKKIDKLIYSDLEVLDDPNGIKVDAVRELAYKSSSSSYEGGKRIFILKDIHKMKKEAGNS 124

Query: 101 LEEIIIKNICNHIIIIKSNEI------KKNNTL-----RKIAEKFTSVLAISCYPDNKIH 149
           L ++I +       I+ S+ +      K  + L     R   E        + Y  N   
Sbjct: 125 LLKLIEEPNEGSFFILLSSSLNILPTIKSRSILVKIKKRNAEELDVDDFTYTFYMGNSED 184

Query: 150 LMD 152
           +  
Sbjct: 185 ING 187


>gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12]
 gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12]
          Length = 391

 Score = 39.2 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L +++L + +K I   AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDRLCDKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLELSAKIEDPITLKT 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           +K +           D     +   +  +++G     +I      +A       +    
Sbjct: 207 LKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLTRLIAGGENPEFIARRL 265


>gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 462

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%)

Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199
            +   I+ +L   +         ++ EA+  L     GD  A+ N  EL  LS+    D 
Sbjct: 185 DISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 244

Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244
            IT              I  DT+     +II+A         +  A+      +A  
Sbjct: 245 TITIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 301


>gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
           18205]
 gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
           18205]
          Length = 638

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 71/227 (31%), Gaps = 32/227 (14%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151
              +   + + +   + I I+               EK   +  I      Y   ++ + 
Sbjct: 136 AAFNAFLKTLEEPPQHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVA 183

Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
           + I               ++A  ++     G    + +   + +S+C+ +  IT Q V +
Sbjct: 184 NTINHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGN--ITYQKVIE 241

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
            +          +++  ++ K+   ++  D  L        ++ G  Q       +  + 
Sbjct: 242 DLNVLDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQH------VRNVM 295

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315
              +     +++ ++      ++   Q   +      + + L  ++ 
Sbjct: 296 MAKDPQTLPLLETSD-----DQKAKFQAQAQKAPTPFLYKALELMNQ 337


>gi|222093792|ref|YP_002527840.1| DNA polymerase iii subunits gamma and tau [Bacillus cereus Q1]
 gi|221237838|gb|ACM10548.1| dna polymerase iii, gamma and tau subunits [Bacillus cereus Q1]
          Length = 504

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++         
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 260 LLEKI--HIIKECSNISFEKIIQ 280
            LE +   ++ +       + +Q
Sbjct: 300 QLEHMLERVMVDEQFRMLSEEMQ 322


>gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
 gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
          Length = 597

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 5/156 (3%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L   +          I  EA  ++     G    + + L +LS        I  + V 
Sbjct: 185 EALEAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLL---PAPIKAEAVW 241

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           +++       +  +  A   G+    +  +   L       A+L G     + L  +   
Sbjct: 242 ELLGAVPEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDLVLMAAA 301

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
            E        +  +    + P+ + I ++ L  W  
Sbjct: 302 PE--RPELTSVSPQLRDQLPPLAQRIGRQRLLQWQA 335


>gi|311897064|dbj|BAJ29472.1| putative DNA polymerase III subunit gamma/tau [Kitasatospora setae
           KM-6054]
          Length = 738

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/143 (7%), Positives = 41/143 (28%), Gaps = 11/143 (7%)

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
            +  +T      ++  T    ++E+++A           + D  +         +   L+
Sbjct: 230 GEAGVTYPMATALLGYTDATLLDEVVDAFAAQDGATVFQVVDRVVEGGHDPRRFVTDLLE 289

Query: 257 KFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
           + + L  +  + +    S               +  +++     +    +      ++  
Sbjct: 290 RLRDLVILATVPDAGEKSLIDAPAD--------RIAVMRAQADRFGPAELSRAADLVNTG 341

Query: 317 IHLARKKKYLE---KNIIFQTIL 336
           +   R         + I  + +L
Sbjct: 342 LTEMRGNAAPRLQLELICARVML 364


>gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1]
 gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1]
          Length = 753

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +  L+E+        ++     +++   GG    S + L +L +   ++  +T     
Sbjct: 180 ATMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYPRAL 238

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++  T V  I++ ++A   G         D  + +           L++ + L  +  +
Sbjct: 239 ALLGVTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAV 298

Query: 268 KECSNI----SFEKIIQKTEKNI 286
            + +      +   +++     +
Sbjct: 299 PDAAERGLVDAPGDVLEHMRAQV 321


>gi|307208004|gb|EFN85563.1| ATPase WRNIP1 [Harpegnathos saltator]
          Length = 505

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 19/115 (16%)

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQ---------KLSSYCLEDILITEQHVKD--- 208
            +  I KE  Q L     GD   + N L+         KL + C  D  IT + V+    
Sbjct: 275 SKFHIDKETLQWLSEACDGDAHVALNTLELAVLAKEPDKLRTSCNNDFKITVKDVRKYLI 334

Query: 209 ---IICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
              ++ D        I +A       GK+  ++      +A+K     +    ++
Sbjct: 335 QTHLLSDEESSQSHHIYSALHKSIRAGKVNASLYWMARIMAAKEDPVNIARRLVR 389


>gi|330879803|gb|EGH13952.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 360

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 151 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 208

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 209 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 268

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 269 GHGDRDRVLALAQALP 284


>gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719]
 gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719]
          Length = 424

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 21/196 (10%)

Query: 144 PDNKIHLMDLIE---ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI- 199
            D +  L   IE     L   Q  I ++A         GD   + N L+        D  
Sbjct: 154 EDVRQALTRAIEYDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKD 213

Query: 200 ---LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
               +T Q  KD +           D H   +     +     +  A+      + +   
Sbjct: 214 GYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL 273

Query: 247 SHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIWNKNL 305
              +    +  +   E I +    +       I+  E+  +P  R  L ++ + +     
Sbjct: 274 PTIVRRLLVISY---EDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPK 330

Query: 306 VRETLHKIDHRIHLAR 321
               +  ID  +   R
Sbjct: 331 SNSAMSAIDSALSDIR 346


>gi|313835781|gb|EFS73495.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL037PA2]
 gi|314970150|gb|EFT14248.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL037PA3]
          Length = 773

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
             I +   +   ++       +++  +L   LGG                  D  ++ + 
Sbjct: 115 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 158

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              ++  T    ++EI++A   G  +   +  D  +             L++ + L  + 
Sbjct: 159 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 218

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +        +         P +   L   +  +    +      +   +   R    
Sbjct: 219 AVPDACRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 270

Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349
                + +  + +L  A T  +  +  
Sbjct: 271 PRLHLELMCSRILLPGADTDGRGIHAR 297


>gi|4539401|emb|CAB37467.1| putative protein [Arabidopsis thaliana]
 gi|7268676|emb|CAB78884.1| putative protein [Arabidopsis thaliana]
          Length = 1057

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 67/207 (32%), Gaps = 33/207 (15%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ 200
              ++  ++      +  I K+A +++ +   G    +   L++LS   L   +      
Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQRISVPLVQ 664

Query: 201 ------ITEQHVKDI-ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                 ++  H+K + +       + ++++  +     N +      + + +   AL   
Sbjct: 665 ELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL--- 721

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
                  L  +       +  F K   K +      ++ + +E     +   +R+ L  +
Sbjct: 722 ----MSQLATVITDILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTL 769

Query: 314 DHRIHLAR-KKKYLEKNIIFQTILYIA 339
                  R     L    +   +L +A
Sbjct: 770 SEAEKQLRVSNDKL--TWLTAALLQLA 794


>gi|307822531|ref|ZP_07652762.1| DNA polymerase III, subunits gamma and tau [Methylobacter
           tundripaludum SV96]
 gi|307736135|gb|EFO06981.1| DNA polymerase III, subunits gamma and tau [Methylobacter
           tundripaludum SV96]
          Length = 540

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 2/111 (1%)

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L          A ++L     G      + L +   Y   +  +  + V  ++      
Sbjct: 190 ILQQEHIEAESGALKLLSRAADGSMRDGLSLLDQAIVY--GNGKVGTEDVNAMLGTVAQQ 247

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            +E I+ A  +G     +   +           +L   LQ    +  +  I
Sbjct: 248 PVEAILTALAEGDAAAILDKINEIANLTPDFSDVLQQILQVLHRIALLQQI 298


>gi|149179070|ref|ZP_01857643.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
 gi|148842110|gb|EDL56500.1| hypothetical protein PM8797T_19475 [Planctomyces maris DSM 8797]
          Length = 445

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 26/191 (13%)

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII------- 210
           L     ++ ++A   L+    GD   S N L+           + +  V           
Sbjct: 188 LARYNVTVEQDALDFLIEVCDGDARRSLNALEIGVLSLHGSERVFDLDVAQESIQKKAIQ 247

Query: 211 ----CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
                D H      +I +        A+      + +      L    +        I  
Sbjct: 248 YDQDGDAHYDSASALIKSMRGSDPDAALYWLARMIEAGEDPRFLARRIV--------IAA 299

Query: 267 IKECSNISFEK------IIQKTEKNIIPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319
            ++  N           +    EK  +P  R +L +++           +   ID  +H 
Sbjct: 300 SEDVGNADPTALTLAMSVFNAVEKIGMPEGRILLSQAVTYIATAPKSNASYVAIDEALHD 359

Query: 320 ARKKKYLEKNI 330
            R K  L   I
Sbjct: 360 VRNKSLLPVPI 370


>gi|331701253|ref|YP_004398212.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128596|gb|AEB73149.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 425

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 103/332 (31%), Gaps = 46/332 (13%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG        + +    +        F ++   A + +K++     E       S   
Sbjct: 43  ILYGPPGTGKTSIASAIAGSTKYA----FRVLNA-ATDTKKDLQVVAEEAK----MSGTV 93

Query: 85  IILIENLST-EKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLR---KIAEKFTS 136
           ++L++ +   +K   D L  ++       II+I    ++  I  N  +R   +I E    
Sbjct: 94  VLLLDEIHRLDKTKQDFLLPLLES---GSIILIGATTENPYININPAIRSRTQIFEVHPL 150

Query: 137 VLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                   D +  L   + +    L     SI+KEA   L     GD  +S N L+ L+ 
Sbjct: 151 TAT-----DIQKALNRALNDKEKGLGNYPVSITKEALNFLATATNGDLRSSLNALE-LAV 204

Query: 194 YC-----LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLAD 238
                     I +T+  V++ +           D H   I     +        A+  A 
Sbjct: 205 KSTPKNDQGKIAVTQAIVEECLQRKALNSDKNGDAHYDVISAFQKSIRGSDTDAALHYAG 264

Query: 239 FFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL 298
             + S      +    +  ++ +   +       ++     ++        +  +    +
Sbjct: 265 RLIESGDLVSIMRRLLVIAYEDVGLANPGACQRTVAAVDAARQLGLP--EARIPLANAII 322

Query: 299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNI 330
            +         +  ID  +   R   Y +  +
Sbjct: 323 ELCLSPKSNSAMAAIDGAVSDIRSGNYGDVPL 354


>gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 562

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299

Query: 269 ECSNI 273
           +  ++
Sbjct: 300 QLEHM 304


>gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis CI]
 gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
           anthracis str. CI]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299

Query: 269 ECSNI 273
           +  ++
Sbjct: 300 QLEHM 304


>gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
 gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
 gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299

Query: 269 ECSNI 273
           +  ++
Sbjct: 300 QLEHM 304


>gi|218901224|ref|YP_002449058.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
 gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 2/125 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++ +       
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSS 299

Query: 269 ECSNI 273
           +  ++
Sbjct: 300 QLEHM 304


>gi|330963243|gb|EGH63503.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 741

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|330879129|gb|EGH13278.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 739

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|71734194|ref|YP_274019.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554747|gb|AAZ33958.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 737

 Score = 38.8 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|320323485|gb|EFW79570.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329472|gb|EFW85464.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 737

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|330889897|gb|EGH22558.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 711

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 161 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 218

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 219 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 278

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 279 GHGDRDRVLALAQALP 294


>gi|257484501|ref|ZP_05638542.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013236|gb|EGH93292.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 737

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|330986180|gb|EGH84283.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 733

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|237736153|ref|ZP_04566634.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229421706|gb|EEO36753.1| ATPase and helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 303

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 29/156 (18%)

Query: 4   IESHKFIQKSTKN---LFLSHFVFIFYGSDKGLIFELINQFKKNI-SITYHDPFSLV--- 56
           I S++ +++  +N   L      ++FYGSD  L+ E    F K +   T    F      
Sbjct: 5   IISNEEVKEFFRNELKLKKDSGTYLFYGSDMSLLMEFALHFAKGLCCETLEGDFCGECNI 64

Query: 57  -------VLNALEIQKNISTF-WNEIN-------STSLFSKKKIILIENLSTEKK-VLDC 100
                  + + LEI  N      +EI        S+S    +KI +I+++S  KK   + 
Sbjct: 65  CKRIDKMLYSDLEILDNPDGLKVDEIRELAYKSSSSSYEGNRKIFIIKDISKMKKEASNA 124

Query: 101 LEEIIIKNICNHIIIIKSNEI------KKNNTLRKI 130
           L ++I +       I+ +  +      K  + L K+
Sbjct: 125 LLKLIEEPNKGSFFILLNTNLNILPTIKSRSILVKV 160


>gi|326442330|ref|ZP_08217064.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
          Length = 719

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%)

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T      ++  T    ++ +++A   G    A  + D  +         +   L++
Sbjct: 232 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 291

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314
            + L  +             +    EK +I    ++++        +    +      ++
Sbjct: 292 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 340

Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349
             +   R      L+ + I  + +L  A    ++    
Sbjct: 341 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 378


>gi|297460413|ref|XP_001249612.2| PREDICTED: UPF2 regulator of nonsense transcripts homolog isoform 2
           [Bos taurus]
 gi|297481422|ref|XP_002692096.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog [Bos
           taurus]
 gi|296481536|gb|DAA23651.1| UPF2 regulator of nonsense transcripts homolog [Bos taurus]
          Length = 1280

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 639 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 690

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 691 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 742

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 743 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 802

Query: 310 LHKI 313
           + K+
Sbjct: 803 MRKL 806


>gi|301779565|ref|XP_002925196.1| PREDICTED: regulator of nonsense transcripts 2-like [Ailuropoda
           melanoleuca]
 gi|281345763|gb|EFB21347.1| hypothetical protein PANDA_014646 [Ailuropoda melanoleuca]
          Length = 1269

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 630 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 793

Query: 310 LHKI 313
           + K+
Sbjct: 794 MRKL 797


>gi|193212992|ref|YP_001998945.1| DNA polymerase III subunits gamma and tau [Chlorobaculum parvum
           NCIB 8327]
 gi|193086469|gb|ACF11745.1| DNA polymerase III, subunits gamma and tau [Chlorobaculum parvum
           NCIB 8327]
          Length = 390

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 18/178 (10%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL-MDLI 154
              +   + + +   + I I  + E+           K  + +A  C   N   + +  I
Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTEL----------HKIPATIASRCQRFNFKRIPISEI 191

Query: 155 EESLL----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVK 207
           +  L         S   +A Q++     G    +++ L ++ ++      +  I    V 
Sbjct: 192 QRQLQFICDAEGISADDDALQLIARKAQGSMRDAQSILDQVIAFAIDSEGERAIRYDKVS 251

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           D++      +   + +A + G     + +A     +       L   ++ F+    IH
Sbjct: 252 DLLSYIDDEHFFMVTDAIVSGDAAAMLDVAGMVNRNGYDEQDFLEKLIEHFRNFLVIH 309


>gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           str. Al Hakam]
 gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
           NVH0597-99]
 gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB108]
 gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB102]
 gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
 gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
 gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB108]
 gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
           NVH0597-99]
 gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           03BB102]
 gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
 gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|298486349|ref|ZP_07004411.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159077|gb|EFI00136.1| DNA polymerase III subunits gamma and tau [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 737

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB
           1003]
 gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB
           1003]
          Length = 589

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 17/169 (10%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           + +        I+++A  ++     G    + + L +           T   V+ ++   
Sbjct: 203 LSKVATKENAQIAEDALALITRAAEGSVRDAMSLLDQAI--SHGAGETTADQVRAMLGLA 260

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
               + ++ +  ++G    A+       +      A+L         L +I        I
Sbjct: 261 DRARVLDLFDMILKGDAAAALTELGAQYSDGADPMAVLRD-------LAEITHWVSVIKI 313

Query: 274 SFEKIIQKTEKNIIPMKRNILQESL------RIWNKNLVRETLHKIDHR 316
           + E     T       +   + +++      R+W   ++ + + ++   
Sbjct: 314 TPEAAEDPTVPPEERTRGQAMAQAIPMRVLSRLW--QMLLKAIEEVSSA 360


>gi|291401994|ref|XP_002717550.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog
           [Oryctolagus cuniculus]
          Length = 1262

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 623 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 674

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 675 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 726

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 727 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 786

Query: 310 LHKI 313
           + K+
Sbjct: 787 MRKL 790


>gi|237799328|ref|ZP_04587789.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022184|gb|EGI02241.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 384

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 170 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 227

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +    +          +L   L     +     + E    
Sbjct: 228 DHGQVFDVLTALLEGDARGVLEAVRYLAEQGPDWSGVLSEILNVLHRVAIAQALPEGVDN 287

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 288 GHGDRDRVLALAQALP 303


>gi|157823467|ref|NP_001101891.1| regulator of nonsense transcripts 2 [Rattus norvegicus]
 gi|149021045|gb|EDL78652.1| UPF2 regulator of nonsense transcripts homolog (yeast) (predicted)
           [Rattus norvegicus]
          Length = 1268

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK +++    +    R +L + L       V   
Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRRKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792

Query: 310 LHKI 313
           + K+
Sbjct: 793 MRKL 796


>gi|302063638|ref|ZP_07255179.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato K40]
 gi|302133891|ref|ZP_07259881.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 740

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|213968912|ref|ZP_03397052.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato T1]
 gi|213926211|gb|EEB59766.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato T1]
          Length = 744

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|301385366|ref|ZP_07233784.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato Max13]
          Length = 740

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|289626398|ref|ZP_06459352.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866322|gb|EGH01031.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 741

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4]
 gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4]
          Length = 747

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            L+E+        ++     +++   GG    S + L +L +   ++  +T      ++ 
Sbjct: 184 GLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYPRALALLG 242

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T V  I++ ++A   G         D  + +           L++ + L  +  + + +
Sbjct: 243 VTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAVPDAA 302

Query: 272 NI----SFEKIIQKTEKNI 286
                 +   +++     +
Sbjct: 303 ERGLVDAPGDVLEHMRAQV 321


>gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Ames]
 gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Sterne]
 gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis
           str. A2012]
 gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0488]
 gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0442]
 gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0193]
 gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0465]
 gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0389]
 gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0174]
 gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812696|ref|YP_002812705.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           CDC 684]
 gi|229604772|ref|YP_002864674.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0248]
 gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           CNEVA-9066]
 gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Kruger B]
 gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Vollum]
 gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           Australia 94]
 gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str.
           Ames]
 gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           Sterne]
 gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0488]
 gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0193]
 gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0442]
 gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0389]
 gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0465]
 gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0174]
 gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           CDC 684]
 gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
           A0248]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|317126764|ref|YP_004093046.1| DNA polymerase III subunits gamma and tau [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471712|gb|ADU28315.1| DNA polymerase III, subunits gamma and tau [Bacillus
           cellulosilyticus DSM 2522]
          Length = 574

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++D + E +      + + A  ++     G    + + L +  SY   D  +TE  V
Sbjct: 180 AQAMIDRMREIIEASHVHVEEAALSLIARASEGGMRDALSLLDQAISYA--DESVTEDDV 237

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             II       + ++  A  +G +   +   D  +      +  L   +
Sbjct: 238 LSIIGAVSQQLLYDVALALNEGHVAGGLEAVDLIIKEGKDPNRFLEDLI 286


>gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
 gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
          Length = 1026

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 19/191 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ ++         + K+A +++ +   G    +   L +LS        I+   V++
Sbjct: 523 DIVNTLQWICTSESLDVDKDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 579

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  +     N +        + +   AL          L  I    
Sbjct: 580 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDI 632

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
              + +F +            KR  L +     +   +R+ L  +       R       
Sbjct: 633 LAGSYAFTRE----RPRRKFFKRPTLSKE----DMEKLRQALKTLSEAEKQLRVSSDKAT 684

Query: 329 NIIFQTILYIA 339
            +    +L +A
Sbjct: 685 WLTA-ALLQLA 694


>gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
 gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
           A1055]
 gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
 gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|56460949|ref|YP_156230.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR]
 gi|56179959|gb|AAV82681.1| DNA polymerase III, gamma/tau subunits [Idiomarina loihiensis L2TR]
          Length = 681

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 57/179 (31%), Gaps = 20/179 (11%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              +   +   L   Q     EA  +L  +  G    + +   +          ++   V
Sbjct: 180 NDDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAI--AQGGGSVSIDSV 237

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
           + ++ +  V  I  ++ + ++G     +   D  ++      ++L         L  +  
Sbjct: 238 RRMLGNVPVADIAALLESVLEGDAEAVMQRVDSMVSMVPDLSSVLVELQSLLHQLALVQQ 297

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
           +   +N+                  ++L+  LR     L+ +  ++    +   R+++ 
Sbjct: 298 VPSAANV--------------FENSDVLKPLLRRMPAELI-QVFYR---TVLEGRREQA 338


>gi|328794225|ref|XP_001122490.2| PREDICTED: uncharacterized AAA domain-containing protein YrvN-like,
           partial [Apis mellifera]
          Length = 318

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 13/144 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC---LEDILITEQHVKDII- 210
           E+ L      IS + K  L  +  GD  +  N L+          +  +IT + +++ I 
Sbjct: 167 EQGLREYNVEISDDDKMWLSGSTDGDLRSVLNALELAVLSTPKENDKTVITREILEECIQ 226

Query: 211 ---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
                     D+H   I     +        A+      L +   + A+    +  F+ +
Sbjct: 227 KKSMSGDKNGDSHYDTISAFQKSIRGSDADAALHYLARILEAGDLNIAMRRLLVIAFEDI 286

Query: 262 EKIHIIKECSNISFEKIIQKTEKN 285
              +       +S  +  + T   
Sbjct: 287 GLANPQAGQYTVSAVQAAKLTGLP 310


>gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L]
 gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DERVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 660

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 3/113 (2%)

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               IS++A  ++     G    + + L +L+        ++ + V D++       +  
Sbjct: 196 ENIPISQDAITLVAQISQGGLRDAESLLDQLALL---PGEVSPEQVWDLVGSVSEKDLFA 252

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
           ++ A  Q      +      L        +L      ++ L          ++
Sbjct: 253 LLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305


>gi|120602907|ref|YP_967307.1| DNA polymerase III subunit delta [Desulfovibrio vulgaris DP4]
 gi|120563136|gb|ABM28880.1| DNA polymerase III, delta [Desulfovibrio vulgaris DP4]
          Length = 329

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120
           +     FW  +    LF   + +++ N       V   L   + +          ++   
Sbjct: 44  EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 102

Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162
                      E+        +  + C  + +           ++  +   +++      
Sbjct: 103 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 152

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
              +  A   + A +  D  A+  EL KL      D  +  + +  ++     L I   I
Sbjct: 153 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGPDATLGPE-LAKLVSHEPDLDIFAFI 211

Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264
            A   G                       +   L++ + L ++
Sbjct: 212 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 254


>gi|28870802|ref|NP_793421.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854051|gb|AAO57116.1| DNA polymerase III, subunits gamma and tau [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 743

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|239618271|ref|YP_002941593.1| DNA polymerase III delta [Kosmotoga olearia TBF 19.5.1]
 gi|239507102|gb|ACR80589.1| DNA polymerase III delta [Kosmotoga olearia TBF 19.5.1]
          Length = 311

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 14/200 (7%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIK 122
              +       +S SLF   + + I +     K   + + +++ +      + +++N   
Sbjct: 32  DDKLEKLKRLFSSNSLFGGIEAVRIIDFDKWRKPEKEMVIDLLKRIQIKSEVFLETN--- 88

Query: 123 KNNTLRKIAEKFTSVLAIS-CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
                 K  +     L  S   P         I++        I K A   L  N G D 
Sbjct: 89  ------KTYDLECKTLNFSRPQPWKPKDWHTHIDKIARKLGVMIEKRAISTLFQNSGPDE 142

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
           +   +EL+KL S       IT + +      ++ + +E +   TI G+            
Sbjct: 143 MLIYSELKKLKSL---GKTITHEDILKYSFVSNRINLELLAIKTITGQHNGLFEKLQDLA 199

Query: 242 ASKMPSHALLHGFLQKFQLL 261
            +     +++ G L     L
Sbjct: 200 VNFSIFLSVVTGILIDIGRL 219


>gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
           HEL-45]
 gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
           HEL-45]
          Length = 583

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+ +A  ++     G    + + L +             + 
Sbjct: 188 EPEVMIALLRKIATAETAEITDDALALITRAAEGSARDATSLLDQAI--SHGAGETGAEQ 245

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       A      A+L   
Sbjct: 246 VRAMLGLADRGRVLDLFDMVLRGDAAAALTELSGQYADGADPMAVLRDL 294


>gi|121607506|ref|YP_995313.1| DNA polymerase III subunits gamma and tau [Verminephrobacter
           eiseniae EF01-2]
 gi|121552146|gb|ABM56295.1| DNA polymerase III, subunits gamma and tau [Verminephrobacter
           eiseniae EF01-2]
          Length = 614

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 2/130 (1%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             +   + + L   Q +   +A Q+L     G    + +   +          + E  V+
Sbjct: 186 QTVHAHLVQVLAAEQVAAEPQALQLLARAARGSMRDALSLTDQAI--AFGSGQLQEAAVR 243

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++      Y+  +I+A  QG     +  A     + + + + L       Q +  +  +
Sbjct: 244 QMLGAVDRSYVFRLIDALAQGDGRAVVETAQELRLNGLSAASTLEEMAAVLQRMAVLQAV 303

Query: 268 KECSNISFEK 277
            + ++    +
Sbjct: 304 PQQADAVDAQ 313


>gi|330973302|gb|EGH73368.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 461

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
           KIST612]
 gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
           KIST612]
          Length = 477

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 27/217 (12%)

Query: 58  LNALEIQKNISTFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           ++ +EI    +   +EI              K K+ +I+ +    K+  + L + + +  
Sbjct: 88  MDIIEIDGASNRGVDEIREIREKVKYPPTMGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 147

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCY-----PDNKIHLMDLIEESLLIGQ 162
            + + I+               E     + I   C      P ++  +   I   L    
Sbjct: 148 EHIVFIL------------ATTEPNKLPMTILSRCQRFDIKPISQERIAGQIAHILEDIG 195

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            S+ +EA   +          + + L ++      D  IT + V   +       I  ++
Sbjct: 196 VSMDREAIDFIAYRGDSSMRDALSLLDQVIDIREADKTITYEDVLAFMGMVDEDQIAGLV 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
              + G     ++       +   S  +    +   +
Sbjct: 256 QDVVAGDKGGVLLKFKAMREAGRDSGLVFGQLIDYLR 292


>gi|289649552|ref|ZP_06480895.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 741

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMATDVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii
           DSM 2661]
 gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 516

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 77/183 (42%), Gaps = 18/183 (9%)

Query: 53  FSLVVLNALEIQKNIST---FWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104
           F ++ LNA + + + +      +   S+S+F KK +I+++ +       +   +  L ++
Sbjct: 65  FEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSELIKV 124

Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
           I K    + II+ +N+    + +R +      V  I   P +   +  ++++        
Sbjct: 125 IKK--AKNPIILTANDAYAPS-IRSLL---PYVEVIQLNPVHTNSVYKVLKKIAEKEGLD 178

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +  +  +++  +  GD  ++ N+L+ L+        ++ +  + +        I + +  
Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAAQKLPDRKREANIFDALRV 234

Query: 225 TIQ 227
            ++
Sbjct: 235 ILK 237


>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
           HTCC2597]
 gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
           HTCC2597]
          Length = 581

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+ E        I+ +A  ++     G    + + L +           T   
Sbjct: 189 EPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 246

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++    ++G    A+       A      A+L   
Sbjct: 247 VRAMLGLADRGRVMDLFEMVMRGDAAAALTELSAQYADGADPLAVLRDL 295


>gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 435

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 78  SLFSKK-KIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131
           SLF  + +IIL + +       ++  L  + E+I ++     II+ +N    +   R   
Sbjct: 97  SLFGFRGRIILFDEVDGLNVREDRGGLAAIVELIRESTW--PIIMTANN-PWDPKFR--- 150

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
           E       I   P  +  ++ ++            ++A +++    GGD    R  +  L
Sbjct: 151 ELRDEAEVIQLKPLRENDILTILRRICNNEGIKCEEDALKLIAEASGGD---VRAAINDL 207

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            +      ++T+  V  +    H   + ++++     + ++      F 
Sbjct: 208 QAAAEGKKVLTKDDVT-VTERAHQFDMFKVLDKVFHARRFDEARSVTFL 255


>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_APKG10F13]
          Length = 323

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 5/136 (3%)

Query: 129 KIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           KI E   +        P     +   ++      +  ++ +A + L     GD    R  
Sbjct: 142 KIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGD---LRRA 198

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMP 246
           +  L      D  IT + V   +       + E++   +QG    A    D   +   + 
Sbjct: 199 INSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNFAGARERLDALIITYGLA 258

Query: 247 SHALLHGFLQKFQLLE 262
              +L    +  + LE
Sbjct: 259 GEDILRQMHRTVRELE 274


>gi|73949064|ref|XP_857902.1| PREDICTED: similar to UPF2 regulator of nonsense transcripts
           homolog isoform 2 [Canis familiaris]
          Length = 1271

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 630 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 793

Query: 310 LHKI 313
           + K+
Sbjct: 794 MRKL 797


>gi|30684540|ref|NP_193617.2| ATP binding / DNA binding / DNA-directed DNA polymerase/
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
          Length = 1111

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 67/207 (32%), Gaps = 33/207 (15%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL------ 200
              ++  ++      +  I K+A +++ +   G    +   L++LS   L   +      
Sbjct: 607 DADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSL--LGQRISVPLVQ 664

Query: 201 ------ITEQHVKDI-ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHG 253
                 ++  H+K + +       + ++++  +     N +      + + +   AL   
Sbjct: 665 ELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL--- 721

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
                  L  +       +  F K   K +      ++ + +E     +   +R+ L  +
Sbjct: 722 ----MSQLATVITDILAGSYDFTKDQHKRK---FFRRQPLPKE-----DMEKLRQALKTL 769

Query: 314 DHRIHLAR-KKKYLEKNIIFQTILYIA 339
                  R     L    +   +L +A
Sbjct: 770 SEAEKQLRVSNDKL--TWLTAALLQLA 794


>gi|75764869|ref|ZP_00744233.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74487644|gb|EAO51496.1| ATPase, AAA family [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 330

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI--LITEQHVKDII 210
           E+ L     +I+ EA        GGD  ++ N  EL  LSS+  +D    IT +  ++ +
Sbjct: 167 EKGLGEYAVTITDEALHHFTNASGGDMRSAYNALELAVLSSFTTDDQAAEITLEIAEECL 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
                      D H   +     +     +  A+      + + 
Sbjct: 227 QKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAG 270


>gi|331015914|gb|EGH95970.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 736

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
           TrichCH4B]
 gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
           TrichCH4B]
          Length = 625

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++DL+          I+++A  ++     G    + + L +           T   
Sbjct: 215 EPEVMIDLLRRIATNETAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTADQ 272

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++++  ++G    A+       A      A+L   
Sbjct: 273 VRAMLGLADRGRVLDLMDMILRGDAAAALTELSGQYAEGADPMAVLRDL 321


>gi|239830865|ref|ZP_04679194.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
           intermedium LMG 3301]
 gi|239823132|gb|EEQ94700.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum
           intermedium LMG 3301]
          Length = 635

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 64/203 (31%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       + ++   +  ++     G    S +   +          +T + 
Sbjct: 219 ESGTLAAHLRRIAEAEEIAVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGAVTAEA 276

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 277 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 336

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      ++  ++   R W   ++ + + ++D      + 
Sbjct: 337 FTPDVAEDVSLSEDERVRGRE----FAQKLSVRVLSRTW--QMLLKGIAEVDTATRPVQA 390

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 391 AEMLLIRLAHAADLPTLDEAIRG 413


>gi|66045069|ref|YP_234910.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255776|gb|AAY36872.1| DNA-directed DNA polymerase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 736

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 589

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 11/168 (6%)

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNEIK--KNNTLRKIAEKFTSVLAISCYPDNKIHLM 151
            K   + L +I+ +   + I I+ + EI+      L +        ++I         + 
Sbjct: 131 SKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKRISI-------DTIS 183

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             I E L    KSI +    ++     G    + + L ++    + D  I+   + +++ 
Sbjct: 184 KNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVV--AINDNNISYDKIIEVLG 241

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            T    + E+  + +     + IM              L+ G +  F+
Sbjct: 242 VTTEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFR 289


>gi|255021192|ref|ZP_05293242.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969307|gb|EET26819.1| DNA polymerase III, subunits gamma and tau [Acidithiobacillus
           caldus ATCC 51756]
          Length = 572

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/139 (7%), Positives = 37/139 (26%), Gaps = 2/139 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               + + +   +     +    A ++L     G    + + L +          +  Q 
Sbjct: 193 EPARIRERLRTIVDAEGIAAEDTALELLSHAADGSLRDALSLLDQAI--VHGAGTVAAQA 250

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+D++       +  ++   ++      + L    +        LL   ++    L    
Sbjct: 251 VRDMLGVAPEAVVWSLVTGLLRDDGPTVLRLVQEHMDLGQDPAGLLDAVIEALHRLSLAR 310

Query: 266 IIKECSNISFEKIIQKTEK 284
            +++               
Sbjct: 311 YVEDVRRALPPPWDGGALP 329


>gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
 gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
          Length = 562

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|73949062|ref|XP_544258.2| PREDICTED: similar to UPF2 regulator of nonsense transcripts
           homolog isoform 1 [Canis familiaris]
          Length = 1241

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 600 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 651

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 652 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 703

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 704 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 763

Query: 310 LHKI 313
           + K+
Sbjct: 764 MRKL 767


>gi|47213443|emb|CAF89550.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1389

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 16/196 (8%)

Query: 159  LIGQKSISKEAKQ-ILLANLGGDRIASRNELQKLSSYCLE---DILITEQHVKDIICDTH 214
                K  ++ A    L +    +R  S NEL+ L     E           ++ +     
Sbjct: 1075 AEEAKGKAQAALDKALASRKNTER--SNNELRDLIKQIREFLMQEEADPDSIEAVANRVL 1132

Query: 215  VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECS 271
             L I          +I +        ++S     A+L      ++K + L          
Sbjct: 1133 ELSI-----PASPLQIRHLAEEIKEKVSSLSNVDAILQQTRDDIRKAEQLLLEAKTARHQ 1187

Query: 272  NISFEKIIQKTEKNIIPMKRN--ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKN 329
              + +   +  +K +   +      ++++R    +++          +  +++++ L   
Sbjct: 1188 AENAKATTEAVKKALFNCRTAQTSAEKAIRTAKADILDTEARLAQIELKTSKRERDLNVT 1247

Query: 330  IIFQTILYIAQTACKN 345
            I+    L     A K 
Sbjct: 1248 IVHLETLGREINALKT 1263


>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
          Length = 353

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 34/216 (15%)

Query: 93  TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKN--NTLRKIAEKFTSVL--AISCY--- 143
            + K L        K+     ++I  +++ + K+  N LR++ EK+T  +   I C    
Sbjct: 100 AQTKGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLA 159

Query: 144 ----------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
                           P ++  ++  ++  +      ++ + ++ LL    GD    R  
Sbjct: 160 SIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDM---RTV 216

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +  L S  +   +++E  V   I       +++++   +      A    +    S   +
Sbjct: 217 INTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLL---NQTAKTCMNKIKKSLFEN 273

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
              L   +     L  +    +  + +   II    
Sbjct: 274 GYALQDVITH---LHDLAFSMDIPDSAMSAIIVGLG 306


>gi|332833615|ref|XP_507656.3| PREDICTED: regulator of nonsense transcripts 2 isoform 2 [Pan
           troglodytes]
 gi|332833617|ref|XP_003312506.1| PREDICTED: regulator of nonsense transcripts 2 isoform 1 [Pan
           troglodytes]
          Length = 1272

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|257054072|ref|YP_003131905.1| replication factor C large subunit [Halorhabdus utahensis DSM
           12940]
 gi|256692835|gb|ACV13172.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940]
          Length = 507

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 74/245 (30%), Gaps = 29/245 (11%)

Query: 5   ESHKFIQKSTKNLFLSHFVFIFYG-SDKGLIFELINQFKKNISITYHDPFSLVVLNALEI 63
           ++   +++  ++        + YG    G            ++     P   +  +    
Sbjct: 21  KARDALREWAESWPDHREAVVLYGSPGIGK-----TSAAHALANDMDWPTIELNASDSRT 75

Query: 64  QKNISTFWNEIN---STSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHII 114
           +  I     E     + +     +++++++         ++     +  ++ +     ++
Sbjct: 76  KDVIEQVAGEAAKSGTLAQGGSGRRLVILDEADNLHGNVDRGGTRAITSLVKEAQQPIVL 135

Query: 115 II-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
           I  +  E+ K   LR           I     +   ++ ++ +          KEA + +
Sbjct: 136 IANEFYEMSKG--LRNAC------RDIEFRDVSTRSIVPVLRDICRQEDVGFEKEALRKI 187

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI-QGKIYN 232
                GD    R  +  L +       +TE  V     D     I   ++  + +     
Sbjct: 188 AEMNDGD---LRGAINDLQAIAEGRDTVTEDDVVTSERDRTTD-IFSFLDTVLKEADAQE 243

Query: 233 AIMLA 237
           A+  +
Sbjct: 244 ALEAS 248


>gi|194227172|ref|XP_001916636.1| PREDICTED: UPF2 regulator of nonsense transcripts homolog (yeast)
           [Equus caballus]
          Length = 1268

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792

Query: 310 LHKI 313
           + K+
Sbjct: 793 MRKL 796


>gi|126660297|ref|ZP_01731411.1| hypothetical protein CY0110_31690 [Cyanothece sp. CCY0110]
 gi|126618403|gb|EAZ89158.1| hypothetical protein CY0110_31690 [Cyanothece sp. CCY0110]
          Length = 301

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G D     E I +  K         F++  L             ++  S  LFS 
Sbjct: 2   LYVIAGDDAFRKSEKIAEIIKVGGCER---FNVTTLEDA---------ISDALSLGLFS- 48

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---SVLA 139
           KK ++ E      K    LE ++      +++I+    +     L K   K      + A
Sbjct: 49  KKAMVFEGKEIPYKDSKPLEPLLT---IENVVILDVTTVDGRTKLGKWLNKQKCVERINA 105

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE----AKQILLANLGGDRIASRNELQKLSSYC 195
           ++ + ++K      I+  L +    +  +    AKQ LL  +G D    + EL+ + +Y 
Sbjct: 106 LNQFQEDK------IKAELAMRSLKLGLDLSIHAKQYLLEAVGPDIGRMQRELELIKAYF 159

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
            ED ++  + +  ++ D      +  +   +  +           +   +    +L   +
Sbjct: 160 GEDQVLATE-LPALVPDYAQNSYQ--LAKALTEEPETVYERTQSLINLGIHPLQILATLI 216

Query: 256 QKFQLLEKIHIIKECS 271
            + + L    I  E  
Sbjct: 217 NRIEKLMLTAIGLESG 232


>gi|7243197|dbj|BAA92646.1| KIAA1408 protein [Homo sapiens]
          Length = 1298

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 657 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 708

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 709 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 760

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 761 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 820

Query: 310 LHKI 313
           + K+
Sbjct: 821 MRKL 824


>gi|330954421|gb|EGH54681.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae Cit
           7]
          Length = 736

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|206895949|ref|YP_002247233.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738566|gb|ACI17644.1| holliday junction DNA helicase RuvB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 320

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           Y + +  +  +I+E L      IS EA + +     G    +    +++  Y   + L T
Sbjct: 170 YGEEE--IGKIIKEELAQQGLDISAEALREIAKRSRGTPREALQICRRVVEYAALNHLET 227

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
              V  II   ++L I+E   + +       I               +L   L
Sbjct: 228 L-DVGAIIDLFNLLNIDEYGLSPLDKD---YIRTLAETFKGGPSGIRVLASAL 276


>gi|330960239|gb|EGH60499.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 717

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|260951433|ref|XP_002620013.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720]
 gi|238847585|gb|EEQ37049.1| hypothetical protein CLUG_01172 [Clavispora lusitaniae ATCC 42720]
          Length = 256

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 59  NALEIQKNISTFWNEINSTSLFS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIII 116
           +   I    +   +  ++  +FS   K+I+++       V    L  II +   N    I
Sbjct: 9   DDRGIDVVRNRIKDFASTMQIFSRGFKLIILDEADAMTAVAQNSLRRIIERYTKNTRFCI 68

Query: 117 KSNEIKKNNTLRKIAEKFTSVLAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQ 171
                     L   + K    L   C      P ++  + D ++  +   + +I+ EA+ 
Sbjct: 69  ----------LANYSHKLNPALLSRCTRFRFNPISEEAIRDRVQNVIQQEKLNITPEAES 118

Query: 172 ILLANLGGDRIASRNELQ--KLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGK 229
            LL+   GD   + N LQ  K +     +  +    + + I   H   IE ++++ ++  
Sbjct: 119 ALLSLSKGDMRRALNVLQACKAAL-ENPEDQVDIDMIYECIGAPHPQDIEAVLDSVLKDD 177

Query: 230 IYNAIMLADFFLASK 244
               I+  D +  SK
Sbjct: 178 WTTCILTFDRYKKSK 192


>gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii
           OhILAs]
 gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii
           OhILAs]
          Length = 563

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 162 QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI 221
                +EA +++  N  G    + + L++  SY   +  +T  +V +I+   +  +I ++
Sbjct: 195 GIKTEEEALRLIALNSDGALRDALSILEQCISYT--EDTLTYTNVVNILGMVNYEFIFDL 252

Query: 222 INATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--LLEKIHIIKECSNISFEKII 279
           ++        + + L +  L     +  L+   +  F+  LL K+++  +      E+  
Sbjct: 253 VDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQLDELLTLPEERQ 312

Query: 280 QKTE 283
            +  
Sbjct: 313 DRLR 316


>gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L  L+  +L     + S EA + L+ + GGD   +R+ L+ L         IT   +
Sbjct: 152 NEALSRLLRRALDSSDITCSDEALEYLIKSSGGD---ARSMLKLLEFASNIGTHITLDIL 208

Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           K +  +   +   E           I +     +  AI      +     +  +    
Sbjct: 209 KSLRPNALSVGSSEAGVHYDLSSAMIKSIRGSDMDAAIYYLARLIDGGESAEFIARRL 266


>gi|330981944|gb|EGH80047.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 736

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|314928456|gb|EFS92287.1| DNA polymerase III, subunit gamma and tau [Propionibacterium acnes
           HL044PA1]
          Length = 773

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
             I +   +   ++       +++  +L   LGG                  D  ++ + 
Sbjct: 115 EGIDVDHAVLPLVVRAGGGSVRDSLSVLDQLLGG----------------AADGHVSYEQ 158

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              ++  T    ++EI++A   G  +   +  D  +             L++ + L  + 
Sbjct: 159 AAALLGYTPQALLDEIVDAFAAGDAHQVFVTIDKVIEVGQDPRRFAEDLLRRMRDLVILS 218

Query: 266 IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKY 325
            + +        +         P +   L   +  +    +      +   +   R    
Sbjct: 219 AVPDVCRTGLIDVS--------PEQATRLTHQVAGFGAGELTRAAEVLATGLTNMRGTTA 270

Query: 326 LE---KNIIFQTILYIAQTACKNNNFY 349
                + +  + +L  A T  +  +  
Sbjct: 271 PRLHLELMCSRILLPGADTDGRGIHAR 297


>gi|11693132|ref|NP_056357.1| regulator of nonsense transcripts 2 [Homo sapiens]
 gi|18375676|ref|NP_542166.1| regulator of nonsense transcripts 2 [Homo sapiens]
 gi|60390647|sp|Q9HAU5|RENT2_HUMAN RecName: Full=Regulator of nonsense transcripts 2; AltName:
           Full=Nonsense mRNA reducing factor 2; AltName:
           Full=Up-frameshift suppressor 2 homolog; Short=hUpf2
 gi|11228926|gb|AAG33225.1|AF301013_1 regulator of nonsense transcripts 2 [Homo sapiens]
 gi|12620404|gb|AAG60689.1|AF318574_1 UPF2 [Homo sapiens]
 gi|55662144|emb|CAH73458.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo
           sapiens]
 gi|55961866|emb|CAI16755.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo
           sapiens]
 gi|109731814|gb|AAI14965.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo
           sapiens]
 gi|109732272|gb|AAI15738.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Homo
           sapiens]
 gi|119606734|gb|EAW86328.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_a [Homo sapiens]
 gi|119606735|gb|EAW86329.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_a [Homo sapiens]
 gi|119606736|gb|EAW86330.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_a [Homo sapiens]
 gi|119606738|gb|EAW86332.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_a [Homo sapiens]
 gi|119606739|gb|EAW86333.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_a [Homo sapiens]
 gi|208965670|dbj|BAG72849.1| UPF2 regulator of nonsense transcripts homolog [synthetic
           construct]
          Length = 1272

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
           mellifera]
          Length = 303

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 108 NICNHIIIIKSNEIK--KNNTLRKIAEKFTSVL--AISCY-------------------P 144
                I++ +++ +       LR+  EK +      + C                    P
Sbjct: 108 PPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKP 167

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD-RIAS--RNELQKLSSYCLEDILI 201
             +  +++ +E         + K     ++   GGD R A      + KL     +DI I
Sbjct: 168 LGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLK---GKDIEI 224

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           T   V +II      +++E+I+         A    D F+     +  ++   
Sbjct: 225 TVDDVLEIIGIVPDKWLDELIDVCKTKDYSKAEEFVDQFMLEAYATSQVIEQL 277


>gi|12232320|gb|AAG48509.1| hUPF2 [Homo sapiens]
          Length = 1272

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|302185103|ref|ZP_07261776.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           syringae 642]
          Length = 736

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/136 (7%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + +++ A ++G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
 gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
          Length = 562

 Score = 38.4 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
 gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
          Length = 543

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM--DL 153
              + L + + +   N + I+ + +I           K    +   C   +   +   DL
Sbjct: 133 GAFNALLKTLEEPPKNVVFILATTDI----------HKVPVTIISRCQRFDFRRIGQKDL 182

Query: 154 IEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
           IE         +  I +EA Q++     G    + + L +  ++      IT+  V +++
Sbjct: 183 IERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFA--SGEITKNDVSEVV 240

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
               +  IE  +   +       + L +  + +      +L   +   + L
Sbjct: 241 GRISIEKIEMCVQYLLTRNTTEILSLVNEVILNGKEPIYVLDDLIGYLRDL 291


>gi|116510915|ref|YP_808131.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106569|gb|ABJ71709.1| Recombination protein MgsA [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 419

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210
                +I  +A   L+ +  GD  ++ N L+ L+     +  +T   +++ +        
Sbjct: 170 FDFDVTIDDDALYFLVHSTNGDLRSTFNALE-LAVLSSNEHRVTLDDMENSLQRKAATFD 228

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
              D H   +  +  +     +  ++  A   +         L    +    L  +    
Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLAR---RLTVMAYE- 279

Query: 269 ECSNISFEKII 279
           +    + +  +
Sbjct: 280 DIGLANPDAAV 290


>gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 21/131 (16%)

Query: 146 NKIHLMDLIEESLLIGQKS-------ISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196
            K  +  LI  +L   ++        I ++A + L    GGD   + N ++         
Sbjct: 169 EKEDIRRLIMRALTDEERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVLTTERS 228

Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
               I IT   V + I           D H   I   I +        A+      L + 
Sbjct: 229 EDGKIHITIDVVSECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVFYLAKMLYAG 288

Query: 245 MPSHALLHGFL 255
                +    +
Sbjct: 289 EDVKFIARRIM 299


>gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75]
          Length = 391

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L +++L + +K I   AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDRLCDKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLET 206

Query: 206 VKDI----ICDTHVLY------IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           ++ +    + D              +I +        +I      +A       +    
Sbjct: 207 LQSLRPHSLNDGSYSNDTHYNLTSALIKSLRGSDENASIYYLAHLIAGGENPEFIARRL 265


>gi|206978353|ref|ZP_03239227.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           H3081.97]
 gi|217957599|ref|YP_002336141.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH187]
 gi|228983278|ref|ZP_04143493.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229136866|ref|ZP_04265495.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
 gi|206743445|gb|EDZ54878.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
           H3081.97]
 gi|217064851|gb|ACJ79101.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH187]
 gi|228646601|gb|EEL02806.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BDRD-ST26]
 gi|228776458|gb|EEM24809.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 562

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 421

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 90/317 (28%), Gaps = 34/317 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG        +      + SI +    +++       +K++     E     +  +  
Sbjct: 42  ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +IL E    +K   D L   +       II+I +      + +       T +  +    
Sbjct: 94  LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150

Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195
               K  L   I +    L     SI  +A +      GGD  ++ N L+          
Sbjct: 151 PELIKQALERAIHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210

Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
              I IT +  ++ +           D H   +     +        A+      + +  
Sbjct: 211 DGVIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304
                    +  +   E I +    +       IQ  E+   P  R  +    + +    
Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLHAIQTAERVGFPEARIPLANAVIELCLSP 327

Query: 305 LVRETLHKIDHRIHLAR 321
                +  ID  +   R
Sbjct: 328 KSNSAILAIDEALADIR 344


>gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
 gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
          Length = 588

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+ +A  ++     G    + + L +           T + 
Sbjct: 189 EPEVMIALLRKIASSESAEITDDALALITRAAEGSARDATSLLDQAI--SHGAGETTAEQ 246

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++    ++G    A+       A      A+L   
Sbjct: 247 VRAMLGLADRGRVMDLFEKIMRGDAPGALTELSEQYADGADPLAVLRDL 295


>gi|251772853|gb|EES53412.1| probable DNA polymerase III, delta subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 320

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 84/259 (32%), Gaps = 18/259 (6%)

Query: 69  TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
                I    LF  K+I+ I      +++ D    +      + +++++        TL 
Sbjct: 41  RLLGRIRERPLFGGKRILWISKAERAEEL-DPKALLEKNRHSSTVVVLE----TPEKTLL 95

Query: 129 KIAEKFT-SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN- 186
             ++      LA+   P ++   +  + E        ++K+A   LL    G        
Sbjct: 96  SWSKAIPAYSLALPSKPADREAWLHFLAE---RHALRLAKDAIAPLLTTFEGSPGPVDQL 152

Query: 187 --ELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
             EL+K          I+   ++    ++H   + E++   ++G           FL + 
Sbjct: 153 FSELKK----EGVGPTISAVLLQKHGVESHYKTVFELLRG-LEGNDKRFFAEWRRFLDNG 207

Query: 245 MPSHALLHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303
                L+    ++++L       + +         +  +   + P   +    S R    
Sbjct: 208 QSPFGLISLLHRQWKLYRIAQGTLAQGRGEKEAARMLASIAGVQPFVADSAVRSARRLPP 267

Query: 304 NLVRETLHKIDHRIHLARK 322
           N V + +  +     L + 
Sbjct: 268 NGVSQGIDALAEADRLLKS 286


>gi|148676029|gb|EDL07976.1| mCG18140 [Mus musculus]
          Length = 1268

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792

Query: 310 LHKI 313
           + K+
Sbjct: 793 MRKL 796


>gi|45686327|ref|YP_003912.1| putative tail fiber protein [Enterobacteria phage T1]
 gi|37787962|gb|AAP49966.1| putative tail fiber protein [Enterobacteria phage T1]
          Length = 1172

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK N  RK AE   S+  I+   D     +  IE+        IS  +   L   +  +
Sbjct: 874 MKKENGKRK-AEYTKSLKLIA---DETQARVTAIEQLKASFGDQISA-SNSELREVIATE 928

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEI--INATIQGKIYNAIMLAD 238
             A   E+ +L +   +DI  +   ++++I         EI  + A I   I  ++    
Sbjct: 929 TEALSREIDQLKAQIGDDIQASLTDIREVIATETEALSREIDQLKAQIGDDIQASLTDIR 988

Query: 239 FFLASKM 245
             +A++ 
Sbjct: 989 EAIANET 995


>gi|325000877|ref|ZP_08121989.1| hypothetical protein PseP1_19027 [Pseudonocardia sp. P1]
          Length = 334

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 96/311 (30%), Gaps = 16/311 (5%)

Query: 14  TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE 73
           T++      + +  G ++ L    ++   + +         L      E+          
Sbjct: 13  TRDTAPPDPLQLVVGDEEFLAERAVSDLVRRVRQQ-DAEAELRRFRTSEVA--PGELAGH 69

Query: 74  INSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIK-SNEIKKNNTLRKIA 131
           + S SLF++ ++I++ +     K ++  + + +       +++++ +   K    L  + 
Sbjct: 70  L-SPSLFAEARVIVLTHGQDATKDMVAAIADYVRDPAEGIVLVVQHAGGAKGKAVLDLLR 128

Query: 132 EKFTSVLAISCYP-DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           +    V    C          D +   +     SI+  A  +L+  +G D         +
Sbjct: 129 KAGAHVTT--CNRITRADERSDFVHAEVRRNGGSITNGALAVLVEAVGSDLRELAAAAGQ 186

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L S       I E  V+             + +A + G    A+    + L   +P   +
Sbjct: 187 LVSDTGG--TIDEAGVRRYHRGRAESSGFAVADAAVAGDRRGALEALRWALVLGVPHVLI 244

Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310
                     +  +  +         ++  +       +++   Q  +R W+   +   +
Sbjct: 245 ADALA---DSVRTLAKVGSAGRGDPNRMAGELGMPPWKIRKA--QGLVRQWHPEQLAVAI 299

Query: 311 HKIDHRIHLAR 321
                     +
Sbjct: 300 AATAEVNADVK 310


>gi|229153802|ref|ZP_04281934.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
 gi|228629671|gb|EEK86366.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 4342]
          Length = 558

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
           12940]
 gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
          Length = 326

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              +   I +        ++++  + L+   GGD    R  +  L +  +    + E+ V
Sbjct: 170 DEAVEAQIRQIAQEEVIDVTEDGIEALVYVAGGDM---RKAINGLQAASMSGDTVNEEAV 226

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIH 265
            +I        I E+++  + G    A    D  L    +    ++         L +  
Sbjct: 227 FEITSTARPEDIREMVDLALDGDFTAARSRLDTLLTEEGIAGGDII-------DQLHRTV 279

Query: 266 IIKECSNISFEKIIQKTE 283
              + S+ +  +++ +  
Sbjct: 280 WEFDLSDAAAVRVLDRVG 297


>gi|124487283|ref|NP_001074601.1| regulator of nonsense transcripts 2 [Mus musculus]
 gi|123232545|emb|CAM23347.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus
           musculus]
 gi|123232982|emb|CAM23675.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus
           musculus]
 gi|123233510|emb|CAM20353.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus
           musculus]
 gi|187951027|gb|AAI38359.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus
           musculus]
 gi|187951927|gb|AAI38360.1| UPF2 regulator of nonsense transcripts homolog (yeast) [Mus
           musculus]
          Length = 1269

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 629 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 680

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 681 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 732

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 733 KQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 792

Query: 310 LHKI 313
           + K+
Sbjct: 793 MRKL 796


>gi|324324012|gb|ADY19272.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 562

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|297624591|ref|YP_003706025.1| DNA polymerase III subunits gamma and tau [Truepera radiovictrix
           DSM 17093]
 gi|297165771|gb|ADI15482.1| DNA polymerase III, subunits gamma and tau [Truepera radiovictrix
           DSM 17093]
          Length = 522

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 66/220 (30%), Gaps = 19/220 (8%)

Query: 54  SLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLST--EKKVLDCLEEIIIKNI 109
            +  L+A      ++I     ++   SL   ++ + + + +    K   + L + + +  
Sbjct: 85  DVTELDAASNNSVEDIRDLREKVRLASLRGGRR-VWVLDEAHMLSKSASNALLKTLEEPP 143

Query: 110 CNHIIII---KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS 166
              + I+   +  ++      R    +F  +        ++  +   +         S  
Sbjct: 144 EGLVFILATTEPEKLPPTILSRTQHFRFRRL--------SEAEIASKLRALCHEAGVSAE 195

Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
           + A  ++     G    + + L++L +       IT Q  +  +       ++ +     
Sbjct: 196 EGALALVARAADGAMRDAESLLERLLT---TGAPITLQDAEGALGLPPQARLQALARHLA 252

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            G + +    A            L      + +      +
Sbjct: 253 AGDLASLFAEASALYRDGFAPRTLAERLAAELRGALYARV 292


>gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR]
 gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR]
          Length = 445

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 41/261 (15%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            IFYG   G          K I+ T    F  V      + +      N      ++ ++
Sbjct: 55  VIFYGP-PGTGK---TTLAKVIANTTKAFFVQVNAVTSGVAELREVIQNAKERLGMYGQR 110

Query: 84  KIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            I+ I+     N S +  +L  +E+    +I     N    + +  ++  + + K  E  
Sbjct: 111 TILFIDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVNAP-LRSRSRIFK-FESL 168

Query: 135 TSVLAISCYPDNKIHLM--DLIEES--LLIGQKSISKEAKQILLANLGGDRIASRNELQK 190
           ++        D+   L+   L ++   L   +  +++EA + L+    GD   + N L+ 
Sbjct: 169 SN--------DDIRKLLWRALQDKEAGLGNYKVDLTEEALEHLVDISSGDARTALNALEL 220

Query: 191 LSSYCLED----ILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIML 236
                  D      IT +  ++ I           D H   I   I +        A+  
Sbjct: 221 AVLTTAPDEKGVRKITLEVAEESIQKRAVLYDKSGDYHYDVISAFIKSIRGSDPDAALYW 280

Query: 237 ADFFLASKMPSHALLHGFLQK 257
                 +      ++   +  
Sbjct: 281 YARMTHAGEDQRFIVRRLIVH 301


>gi|42779101|ref|NP_976348.1| DNA polymerase III subunits gamma and tau [Bacillus cereus ATCC
           10987]
 gi|229194413|ref|ZP_04321218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
 gi|42735016|gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC
           10987]
 gi|228589069|gb|EEK47082.1| DNA polymerase III subunit gamma/tau [Bacillus cereus m1293]
          Length = 562

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ--------- 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++         
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSP 299

Query: 260 LLEKI--HIIKECSNISFEKIIQ 280
            LE +   ++ +    +  + +Q
Sbjct: 300 QLEHMLERVMVDEQFRTLSEEMQ 322


>gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
 gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
          Length = 558

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 146 NKIHLMDLIEESLLIGQKSISK------EAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
               ++ ++E +L    ++ +       E  + L     GD   + N L+ L+       
Sbjct: 299 TDDDILVILERALKTEGQNYTPTDLVDTELLKYLSTFSDGDARTALNLLE-LAMGLSTRP 357

Query: 200 LITEQHVKDII---------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
            IT++ +K  +          D H   I     +   G    A+      L S      +
Sbjct: 358 NITKEDIKASLTKTLVYDRAGDQHYDTISAFHKSVRGGDADAALYYLARMLQSGEDPLYI 417

Query: 251 LH 252
             
Sbjct: 418 AR 419


>gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533]
          Length = 420

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
            D    L+  ++E   + +K I KEA  I+  +  GD   + N L+  + + +    I+ 
Sbjct: 154 KDISHVLIRALKEVFHLEEKQIDKEAINIIARSADGDLRVALNLLE--TIHAINGDEISI 211

Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           + VK+ +             H  Y+    ++        A+      L +      +  
Sbjct: 212 ESVKEFVKGQHFAYDRKATKHYDYLAAYSDSMAGSDTDAALYYLTVLLKNGDLPSVVRR 270


>gi|119606737|gb|EAW86331.1| UPF2 regulator of nonsense transcripts homolog (yeast), isoform
           CRA_b [Homo sapiens]
          Length = 1258

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|224090627|ref|XP_002309040.1| predicted protein [Populus trichocarpa]
 gi|222855016|gb|EEE92563.1| predicted protein [Populus trichocarpa]
          Length = 1464

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 147  KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN-ELQKLSSYCLEDILITEQH 205
                +DLI+ +    Q  I++EA + L A  G  + A +  EL++L+        +T  +
Sbjct: 1149 AREFLDLIDAADATAQVDIAREALKRLAA-AGSVKGALQGHELRRLALCLANHGELTRLN 1207

Query: 206  --VKDIICDTHVLYIEEIINATIQGKIYNAIMLADF---FLASKMPSHALLHGFLQKFQL 260
              V ++I     L  E   +A + G                 + + +HA     L+    
Sbjct: 1208 GLVSNLIS--AGLGREAAFSAAVLGDNALMEKSWQDTGMLAEAVLHAHAHGRPTLKNLVQ 1265

Query: 261  LEKIHIIKECSNISFEKIIQKT 282
                 + KE  + +  + I   
Sbjct: 1266 AWNKMLQKEV-DHAPSQKIDAA 1286


>gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str.
           Sheeba]
 gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter
           acinonychis str. Sheeba]
          Length = 393

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N+  L  L  ++L +  K I   AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NESDLDKLCSKALTLLNKQIEPSAKTYLLNNSTGDARAL---LNLLDLSAKIEDPITLET 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           +K +           D     +   +  +++G     ++      +A       +    
Sbjct: 207 LKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASLYYLARLIAGGENPEFIARRL 265


>gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159]
 gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159]
          Length = 450

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI----- 209
           E  L      I  EA ++L+    GD   + N L+ +++   ++  IT + V        
Sbjct: 186 ERGLGELGLRIEPEALRLLVGLANGDARMALNTLE-VAAAGAQEGTITVELVHQAAMRRG 244

Query: 210 -----ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQ 256
                  D H   I  +  A        A+      L        +    ++
Sbjct: 245 SVYDRAGDAHYDTISALHKAIRGSDPDAALYWLARMLEHGDDPLYVARRLVR 296


>gi|293363693|ref|ZP_06610440.1| DNA polymerase III, delta subunit [Mycoplasma alligatoris A21JP2]
 gi|292552737|gb|EFF41500.1| DNA polymerase III, delta subunit [Mycoplasma alligatoris A21JP2]
          Length = 310

 Score = 38.0 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 98/267 (36%), Gaps = 23/267 (8%)

Query: 73  EINSTSLFSKKKIILIEN----LSTEKKVL---DCLEEIIIKNICNHIIIIKSNEIKKNN 125
           E++S S+FS+KK+ +  N    +  +K +          +  +  N  I   S E   NN
Sbjct: 43  EMSSISIFSEKKLFIFPNFYLFMKKDKDINFNEKKFISYLTNDSFNEYIFTFSEEKIINN 102

Query: 126 TLRKIAEK---FTSVLAISCYPDNKIHLMDLIEESLLIGQKSIS-KEAKQILLANLGGDR 181
               +  K       L+             +I++ +   +  IS  +A   L   L  + 
Sbjct: 103 PFTNLVLKNSLHKEALSF-----TPSDYPKVIKKIVTENKGEISILDAL-YLAQKLPNNL 156

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
                E++KL S  L    IT++ +   + D  +      IN+                 
Sbjct: 157 ELIICEIKKLLSQSLN---ITKEIIDLSVGDYGLDDQYSFINSIATRNFSLIYKKYTERK 213

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            S     +L+        L  +I ++ + + +S  +II+  + N I  ++   +E L  +
Sbjct: 214 RSGDTILSLIGQLSSFVCLTHRI-VMFKKAKLSANEIIETLKLNKIRYRKA--EEFLVQY 270

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEK 328
            ++ V + +  ++      ++    ++
Sbjct: 271 GQSKVLKIIKDLEKLDLDIKRTGVNDE 297


>gi|222480222|ref|YP_002566459.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|254797629|sp|B9LPV1|RFCL_HALLT RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|222453124|gb|ACM57389.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 500

 Score = 38.0 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              ++ ++ +           +A + +      +R   R  +  L +       I  + V
Sbjct: 171 ARSIVPVLRDICRKEGIEFESDALERIAER---NRGDLRGAINDLQAATEGRDSIAVEDV 227

Query: 207 KDIICDT-HVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +  D    L +   ++A +  K  +A        A     
Sbjct: 228 --VTGDRDKALGLFPYLDAVL--KEESAEEALQSAYAVDETP 265


>gi|309355098|emb|CAP39475.2| hypothetical protein CBG_22959 [Caenorhabditis briggsae AF16]
          Length = 551

 Score = 38.0 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 34/216 (15%)

Query: 93  TEKKVLDCLEEIIIKNICNHIIII--KSNEIKKN--NTLRKIAEKFTSVL--AISCY--- 143
            + K L        K+     ++I  +++ + K+  N LR++ EK+T  +   I C    
Sbjct: 315 AQTKGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLA 374

Query: 144 ----------------PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
                           P ++  ++  ++  +      ++ + ++ LL    GD    R  
Sbjct: 375 SIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREALLRVSKGDM---RTV 431

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           +  L S  +   +++E  V   I       +++++   +      A    +    S   +
Sbjct: 432 INTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLL---NQTAKTCMNKIKKSLFEN 488

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
              L   +     L  +    +  + +   II    
Sbjct: 489 GYALQDVITH---LHDLAFSMDIPDSAMSAIIVGLG 521


>gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
 gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
          Length = 581

 Score = 38.0 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|22299433|ref|NP_682680.1| hypothetical protein tlr1890 [Thermosynechococcus elongatus BP-1]
 gi|22295616|dbj|BAC09442.1| tlr1890 [Thermosynechococcus elongatus BP-1]
          Length = 468

 Score = 38.0 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 27/139 (19%)

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLHGFL-----------QKFQLLEKIHIIKECSNIS 274
             G +  AI   +  L +  P + LL   L           +  +  + +    + +  S
Sbjct: 62  FLGDLQGAIKAYERVLKTPTPQNQLLRLHLGVLYAEAGQGDRALKTWQFLIQEAQGATRS 121

Query: 275 FEKIIQKT--EKN-IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNII 331
             +++     E   ++P    +++++L+ W ++     L ++       R    +     
Sbjct: 122 TAEVLLGLWSEPPQLLPEAEPLIKQTLQGWFRD---RALERLYE--LQQRSDALMALARA 176

Query: 332 FQTILYIAQTACKNNNFYK 350
            Q              FY+
Sbjct: 177 AQN--------RAQGAFYR 187


>gi|194336682|ref|YP_002018476.1| DNA polymerase III, subunits gamma and tau [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309159|gb|ACF43859.1| DNA polymerase III, subunits gamma and tau [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 401

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              +   + + +   + I I  + E+ K   T+    ++F     I    + +  L  + 
Sbjct: 142 AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKR-IP-LEEIQKQLQFIC 199

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL---ITEQHVKDIIC 211
           +      Q ++  +A Q++     G    +++ L ++ ++  E+     IT   V +++ 
Sbjct: 200 D----AEQITVDGDALQLIGRKAQGSMRDAQSILDQVIAFSAENDHTGSITYSGVAELLN 255

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE--------- 262
                ++ E+ +A  +      + +A F + +       L   ++  +            
Sbjct: 256 YIDDEHLFEVTDAVAERNAVKMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVQNLSSTR 315

Query: 263 --------KIHIIKECSNISFEKIIQ 280
                   +    ++  N S   ++Q
Sbjct: 316 LVERPDAIRERYQRDAGNFSPFAVMQ 341


>gi|326405680|gb|ADZ62751.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 419

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210
                +I  +A   L+ +  GD  ++ N L+ L+    E+  +T   +++ +        
Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
              D H   +  +  +     +  ++  A   +         L    ++ 
Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273


>gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5]
 gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5]
          Length = 421

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 34/317 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG        +      + SI +    +++       +K++     E     +  +  
Sbjct: 42  ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +IL E    +K   D L   +       II+I +      + +       T +  +    
Sbjct: 94  LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150

Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195
            +  K  L   + +    L     SI  +A +      GGD  ++ N L+          
Sbjct: 151 PDLIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210

Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             +I IT +  ++ +           D H   +     +        A+      + +  
Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304
                    +  +   E I +    +       IQ  E+   P  R  +    + +    
Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327

Query: 305 LVRETLHKIDHRIHLAR 321
                +  ID  +   R
Sbjct: 328 KSNSAILAIDEALADIR 344


>gi|289754520|ref|ZP_06513898.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289695107|gb|EFD62536.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 312

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 49  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 277 TAMRLVAE 284


>gi|215431356|ref|ZP_03429275.1| hypothetical protein MtubE_11878 [Mycobacterium tuberculosis
           EAS054]
          Length = 318

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 55  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 283 TAMRLVAE 290


>gi|260789910|ref|XP_002589987.1| hypothetical protein BRAFLDRAFT_81620 [Branchiostoma floridae]
 gi|229275174|gb|EEN45998.1| hypothetical protein BRAFLDRAFT_81620 [Branchiostoma floridae]
          Length = 696

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 18/142 (12%)

Query: 29  SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
           +D+GL+ E        I  T  D    V +N  ++  +     +E         +    +
Sbjct: 353 NDRGLVAEQTTGAPALIPPTLRD---RVQVNGSDVIMDPVLVSDE--------GQYTCTV 401

Query: 89  ENLSTEKKVLDCLEEIIIKNICNHIIIIK----SNEIKKNNTLRKIAEK--FTSVLAISC 142
            +  T +   D ++ ++       +I I+    + +++    L  +           +S 
Sbjct: 402 LHRDTFQSFTDTVDLLVRVQPEAPVITIEGSPAAGQLQPGTNLTLVCHSWWGRPAAQLSW 461

Query: 143 YPDNKIHLMDLIEESLLIGQKS 164
           Y D    +  +   ++      
Sbjct: 462 YRD-GQVVNGVYTSAVDADGYG 482


>gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
 gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
          Length = 457

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 18/117 (15%)

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-----EDILITEQH 205
             L++E  L  + ++  +A+  L+   GGD   +R  L  L +         +  IT  H
Sbjct: 192 AALVDERGLDERFTLDDDARDHLVRMAGGD---ARRALTALEAGAGVATDAGEKTITLAH 248

Query: 206 VKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           V+  +           D H      +I +     +  A+      L +      +  
Sbjct: 249 VEQAMAAAAVRYDRAGDQHYDVASALIKSMRGSDVDAALHYLARMLEAGEDPRFIAR 305


>gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537]
          Length = 428

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 21/164 (12%)

Query: 143 YPDNKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
           YP  +  +   I+ +L            +I  +A + L     GD  ++ N L+      
Sbjct: 149 YPLTENDIHQAIQRTLNDKENGLGNYAVTIDDQAMKQLTQATNGDLRSALNALELAVLST 208

Query: 196 LEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
             +      +T   ++++            D H   I  +  +     +  A+  A   +
Sbjct: 209 SPENDDTIHLTLSAIEEVTQRKALSADKDGDAHYDVISALQKSIRGSDVDAALHYAARII 268

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
            S   +  +    +  ++ +   +       IS  +  Q     
Sbjct: 269 ESGDLNILIRRLAVIAYEDIGLANPSAAQHTISAIQAAQMLGLP 312


>gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 583

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 45/138 (32%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ +++         I+++A  ++     G    + + L +           T + 
Sbjct: 190 EPEDMIGMLQRIAAGEHAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTVEQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++    ++G    A+       A+     A+L    +    +  + 
Sbjct: 248 VRAMLGLADRGRVLDLYQMIMRGDAAAALTELGEQYAAGADPMAVLRDLAEITHWISVVK 307

Query: 266 IIKECSNISFEKIIQKTE 283
           I  + ++       ++  
Sbjct: 308 ITPDAADDPTVSPDERAR 325


>gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1]
 gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1]
          Length = 463

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 23/132 (17%)

Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--- 195
            + HL  L + +L             +  EA+  L+   GGD     N L+ L+      
Sbjct: 170 EEHHLSILFDRALSDPERGYGKISVQVDPEARAHLIRVSGGDARNLLNALE-LAVESTPP 228

Query: 196 --LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
                  IT    ++ I           D H   I   I +        A+      LA+
Sbjct: 229 DENGVRHITLDVAQESIQRRAVLYDKNGDAHYDTISAFIKSVRGSDPDAALYWLAKMLAA 288

Query: 244 KMPSHALLHGFL 255
                 +L   +
Sbjct: 289 GEDPRFILRRLI 300


>gi|310779061|ref|YP_003967394.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus
           DSM 2926]
 gi|309748384|gb|ADO83046.1| DNA polymerase III, subunits gamma and tau [Ilyobacter polytropus
           DSM 2926]
          Length = 486

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 21/223 (9%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
             I    ++IN      +KK+ +I+      K+  + L + + +   + + I+       
Sbjct: 102 DEIRQLKDKINYRPARGRKKVYIIDEAHMLTKEAFNALLKTLEEPPSHVLFIL------- 154

Query: 124 NNTLRKIAEKFTSVLAI--SCYPDNKIHLMD-LIEESL----LIGQKSISKEAKQILLAN 176
                   E    +  I   C   +   +      + L          +  E+  ++   
Sbjct: 155 -----ATTEPDKILPTIISRCQRYDFKPISFESTRDRLLEIGKSEGIEVDDESLLLIYEK 209

Query: 177 LGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
            GG    + +  +KL S C  +  IT +  + ++       + E +    +G  Y  +  
Sbjct: 210 AGGSMRDAISIFEKLISSCYGES-ITIEKSQKVLGVIPEKQLMEFLQIAREGDSYKGVKF 268

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKII 279
            D      +   +      +  + L     +     +     I
Sbjct: 269 LDKLWNGSVNIESFFRDLAKLSKELMLKDELTPEEGMPIIGAI 311


>gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
           HTCC2255]
 gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
           HTCC2255]
          Length = 594

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILIT 202
           PD+ + L+  I ES    +  IS++A  ++     G   ++R+ +  L            
Sbjct: 194 PDDMMELLKKIAES---EEAKISQDALALI---TRGSEGSARDAISLLDQAIAHGAGETN 247

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              V+ ++       + ++ +  ++G+   A+       A      A+L   
Sbjct: 248 ADQVRAMLGLADRGRVLDLFDMIMRGQADKALEELSGQYADGADPLAILRDL 299


>gi|62185028|ref|YP_219813.1| hypothetical protein CAB399 [Chlamydophila abortus S26/3]
 gi|62148095|emb|CAH63852.1| putative DNA-binding protein [Chlamydophila abortus S26/3]
          Length = 311

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 90/276 (32%), Gaps = 30/276 (10%)

Query: 67  ISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNN 125
           IS       S  LF+ ++++ I        +  D L         +  +I+ +    K +
Sbjct: 54  ISDLSQWTESYGLFASREVVSIFQAEKLSSQTRDFLARYARNPHPHLTLILFT---TKQS 110

Query: 126 TLRKIAEKFTSVLAISCY----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GD 180
             + + ++  S + +S +     D +  +  L+ +   +   S S       +      +
Sbjct: 111 FFQSLRKELPSAVFLSLFGEWQSDAEKRMAILLSQKASLLGISCSLALASAFIKKFPQAE 170

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
                 E  KL     +  ++    +++ +     + + ++ +A  Q     +  +    
Sbjct: 171 MHNLLGEFHKLLCCLGKKQVLEYNDIENFVVKQEQVSLWKLRDAVFQRNTSASQAMLQAL 230

Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300
           L         L  FL+  Q L  +  ++E +            K+   +           
Sbjct: 231 LHEHGEEPLGLIAFLR-GQCLYGLRSLEEAAGD---------RKHRFFV----------A 270

Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
           + K  + + L  + +   + +     +  I  +T+L
Sbjct: 271 YGKERLYQALSYLFYAESIIKNNAQ-DSIIAMETLL 305


>gi|121605884|ref|YP_983213.1| chromosomal replication initiator DnaA [Polaromonas
           naphthalenivorans CJ2]
 gi|120594853|gb|ABM38292.1| Chromosomal replication initiator, DnaA [Polaromonas
           naphthalenivorans CJ2]
          Length = 235

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 88  IENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKF---TSVLAISCY 143
           +   + ++   +     +  +  +   ++ +  +   +  LR+         +V A+   
Sbjct: 107 LYTPAQQRSAFNWFVNALSTDDGHPRWVVAAGNVPPADLPLREDLRTRLGWGNVFALQAL 166

Query: 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL 200
            D++     +I+        S+S E    +L +   D  +    L KL SY L+   
Sbjct: 167 SDDERR--AVIKREADARGFSLSDEVTDFMLTHFSRDLGSLMQLLDKLDSYALQTKR 221


>gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 421

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 92/317 (29%), Gaps = 34/317 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG        +      + SI +    +++       +K++     E     +  +  
Sbjct: 42  ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +IL E    +K   D L   +       II+I +      + +       T +  +    
Sbjct: 94  LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150

Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195
            +  K  L   + +    L     SI  +A +      GGD  ++ N L+          
Sbjct: 151 PDLIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210

Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             +I IT +  ++ +           D H   +     +        A+      + +  
Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304
                    +  +   E I +    +       IQ  E+   P  R  +    + +    
Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327

Query: 305 LVRETLHKIDHRIHLAR 321
                +  ID  +   R
Sbjct: 328 KSNSAILAIDEALADIR 344


>gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 431

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-----EDILITEQHVKDI 209
           +  L   +  I+ +A + ++    GD   + N L+ L+S+         ++I    VK++
Sbjct: 184 DRGLGKKKLQITDDAIEEIVRFANGDARIALNTLE-LASFMASPLEDGRLMIDRDVVKEV 242

Query: 210 I----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           I           D H   I   I +        A+      L S      +    +    
Sbjct: 243 IGKRVFRYDQKGDEHYHTISAFIKSIRGSDPDAALYYLAKMLLSGEDPRFIARRLI---- 298

Query: 260 LLEKIHIIKECSNISFEKII 279
               IH  ++        I+
Sbjct: 299 ----IHAAEDIGMADPFAIV 314


>gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1]
 gi|158513389|sp|A3DNV8|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1]
          Length = 423

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 76/201 (37%), Gaps = 27/201 (13%)

Query: 19  LSHFVFIFYGS----DKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW-NE 73
            S    + YG        L+    N++   I       F          +++I       
Sbjct: 41  PSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRR--------RQDIERIAKTA 92

Query: 74  INSTSLFSKKKIILIEN-----LSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLR 128
               SLF++ KIIL++       + ++  +D +  ++   I  + +++ +N    +  L+
Sbjct: 93  AFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLE--ITRYPVVMTANN-PWDQKLK 149

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
            + +     L I+    ++  ++ +++    + +      A + +     GD  ++ N+L
Sbjct: 150 PLRDAS---LMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLRSAINDL 206

Query: 189 QKLSSYCLEDILITEQHVKDI 209
           Q +         +T   V+++
Sbjct: 207 QAI---AEGFGRVTLNWVREL 224


>gi|313680933|ref|YP_004058672.1| DNA polymerase III subunits gamma/tau [Oceanithermus profundus DSM
           14977]
 gi|313153648|gb|ADR37499.1| DNA polymerase III, subunits gamma and tau [Oceanithermus profundus
           DSM 14977]
          Length = 615

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 42  KKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDC 100
            + +    H     +   +    +++      I    L + +K+I+++      K   + 
Sbjct: 80  CRMVREDRHPDVVEIDAASNNSVEDVRELRERILLAPLVAPRKVIILDEAHMMSKSAFNA 139

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD-------NKIHLMDL 153
           L + + +   + I I                E       I            ++  +   
Sbjct: 140 LLKTLEEPPEHVIFIF------------ATTEPERMPATILSRTQHFRFRRLSEEEIAGK 187

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L    +    EA +++    GG    + + L +L    L+   IT Q  ++ +   
Sbjct: 188 LAAVLEAEGRRAEPEALRLIARMSGGAMRDAESILDRLL--ALDVDPITRQAAEEALGLP 245

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
               +  +  A   G++  A+  A    +    +  L     Q  Q      +
Sbjct: 246 PAERVAAVAAALDSGEVDRAVAEAQRLFSEGYSARTLTEQLAQALQAGLYARL 298


>gi|125622982|ref|YP_001031465.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491790|emb|CAL96710.1| chromosome segregation helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069723|gb|ADJ59123.1| recombination factor protein RarA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 419

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210
                +I  +A   L+ +  GD  ++ N L+ L+     +  +T   +++ +        
Sbjct: 170 FDFDVTIEDDALYFLVHSTNGDLRSTFNALE-LAVLSSNEHRVTLDDMENSLQRKAATFD 228

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
              D H   +  +  +     +  ++  A   +         L    +    L  +    
Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLAR---RLTVMAYE- 279

Query: 269 ECSNISFEKII 279
           +    + +  +
Sbjct: 280 DIGLANPDAAV 290


>gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
 gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
          Length = 581

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|281490561|ref|YP_003352541.1| chromosome segregation helicase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374379|gb|ADA63912.1| Chromosome segregation helicase, ATPase, AAA family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 419

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210
                +I  +A   L+ +  GD  ++ N L+ L+    E+  +T   +++ +        
Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
              D H   +  +  +     +  ++  A   +         L    ++ 
Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273


>gi|188585197|ref|YP_001916742.1| glycogen/starch/alpha-glucan phosphorylase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349884|gb|ACB84154.1| glycogen/starch/alpha-glucan phosphorylase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 828

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           E + I+ +   + ++     T++ I       L E+L  W +  ++  L +I   +H 
Sbjct: 326 ELMRILMDEEGLDWDTAFDLTKRTISFTNHTTLPEALESWPEETIKCLLPRIHMIVHE 383


>gi|15672079|ref|NP_266253.1| recombination factor protein RarA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722942|gb|AAK04195.1|AE006248_3 chromosome segregation helicase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 419

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII-------- 210
                +I  +A   L+ +  GD  ++ N L+ L+    E+  +T   +++ +        
Sbjct: 170 FDFDVTIDDDALYFLIHSTNGDLRSTFNALE-LAVLSSEEHHVTLDDMENSLQRKAATFD 228

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
              D H   +  +  +     +  ++  A   +         L    ++ 
Sbjct: 229 KDGDAHYDLLSALQKSIRGSDVNASLHYAARLIEGGD-----LQSLARRL 273


>gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
           sp. PCC 7335]
 gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
           sp. PCC 7335]
          Length = 745

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 17/191 (8%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                 I   A Q++     G    + + L +LS    +   IT + V D++       +
Sbjct: 193 AEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSL---QANKITVETVWDLVGAVPERDL 249

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
             ++ A         +      +        +L   +  ++ L       +  ++     
Sbjct: 250 LNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPKRVDLVAITS 309

Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK--KKYLEKNIIFQTIL 336
               E  I   ++          +   +  +  K+       +   +  L   I    +L
Sbjct: 310 PTWAE-MIPFAQK---------LSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLL 359

Query: 337 --YIAQTACKN 345
              +   A + 
Sbjct: 360 PSALEVMAKRT 370


>gi|256426033|ref|YP_003126686.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis
           DSM 2588]
 gi|256040941|gb|ACU64485.1| DNA polymerase III, subunits gamma and tau [Chitinophaga pinensis
           DSM 2588]
          Length = 634

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 102/306 (33%), Gaps = 45/306 (14%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           F++  L+A       +I T   ++       K KI +I+ +        +   + + +  
Sbjct: 90  FNIHELDAASNNSVDDIRTLVEQVRFAPQAGKYKIYIIDEVHMLSSSAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN-----KIHLMDLIEESLLIGQ 162
              I I+               EK   +  I   C   +         +D ++E      
Sbjct: 150 SYAIFIL------------ATTEKHKILPTILSRCQIFDFKRITIQDTVDHLQEICSKEH 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
                +A  ++     G    S + L K+ S+      +T Q+  + +      Y   ++
Sbjct: 198 IQAETDALHLVAQKTDGCMRDSLSTLDKIVSFTGG--HLTYQNTLEHLNILDYDYFFRVM 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK------IHIIKECSN-ISF 275
           +  +Q  +  A+++ D  L         L+G+ +  + L        +H+++   N    
Sbjct: 256 DTVLQQDVATALLIFDEILQKGFEGDNFLNGWAEFLRNLLMSKEEKVLHLVEVSGNLKDR 315

Query: 276 EKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTI 335
            K +            + L  +L + N+  +   + +         K+ ++E  +I    
Sbjct: 316 YKQMAGKVSP------SYLITALHLLNETEINYRMAR--------NKRLHVEMALIKLCF 361

Query: 336 LYIAQT 341
           L  A T
Sbjct: 362 LQQAVT 367


>gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0082]
 gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0082]
          Length = 581

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994]
 gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994]
          Length = 392

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +++ L+     + +EA++ L+A+ GGD   +R  L+ L   C  +  IT   +K +    
Sbjct: 155 LDDLLVRTAIEMDEEAREYLIASSGGD---ARAMLKLLEVSCALNKPITLGLLKSLRPAA 211

Query: 214 HVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
             L   E           I +        AI      +    P   +    
Sbjct: 212 QSLGSSEAGVHYDLASALIKSIRGSDPDAAIYYLARLIEGGEPPEFIARRL 262


>gi|308095342|ref|ZP_07663250.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308089339|gb|EFO39034.1| DNA polymerase III, delta subunit [Vibrio parahaemolyticus
           Peru-466]
          Length = 138

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           V++ +G++  LI E     +K         F      A++   + +  ++   + SLFS 
Sbjct: 19  VYLIFGNEPLLIQESRQAIQKTA---LQHGFEERHRFAVDASLDWNQVYDCFQALSLFSS 75

Query: 83  KKIILIE--NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
           +++I +E         +   L+ +      + +++I   ++ K
Sbjct: 76  RQLIELEIPESGVTTAISKELQTLCDMLHDDIMLVIIGTKLTK 118


>gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
 gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
          Length = 581

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
 gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica]
          Length = 358

 Score = 37.6 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILIT 202
           +  +   I + +   +  I+ +AK  LL    GD   + N LQ  + +          IT
Sbjct: 195 EAAIDKRIMQVIDAEKVKIAPDAKAALLELSKGDMRRALNVLQ--ACHTGLEHPGKDTIT 252

Query: 203 EQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
              V   +       I+ I+ + +      A
Sbjct: 253 LSQVYLCVGSPDPADIDTILTSILNDDWTTA 283


>gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum
           ferrodiazotrophum]
          Length = 576

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 97/286 (33%), Gaps = 43/286 (15%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            ++ T    +    L S+ +I++I+ +        + L + + +   + + I+ + E  K
Sbjct: 103 DDVRTLRESLVYAPLTSRSRIVIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHK 162

Query: 124 --NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
             +  L +       +L +S        + D I         S++     ++     G  
Sbjct: 163 IPDTVLSRCQHFRFRLLTVS-------QISDRILHVCRSENISLNPTVTGMVARAAEGSL 215

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
             + + L +L      +  +T   V D++  T     E+++ A + G +   +  A   L
Sbjct: 216 RDALSLLDQL-LRTGGES-LTPADVADLLGVTDHALEEKMLAAILLGDLSATLRTARTAL 273

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNI----------SFEKIIQKTEKNIIPMKR 291
            + +   A +    ++F+  + +H   + +++          S + +      NI     
Sbjct: 274 DTGVDPRAQVRSLARRFR--DILHSTLDGTSLDSPIYGWIPESVQALPLDPPPNIFF--- 328

Query: 292 NILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY 337
                         + + L  +       R+       I F+ +L 
Sbjct: 329 --------------LEQALSVLVKGEDDLRRSPQP--AITFELLLA 358


>gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN
 gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 421

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 34/317 (10%)

Query: 25  IFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKK 84
           I YG        +      + SI +    +++       +K++     E     +  +  
Sbjct: 42  ILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIN-----NKKDMEIVAQEAK---MSGQVI 93

Query: 85  IILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144
           +IL E    +K   D L   +       II+I +      + +       T +  +    
Sbjct: 94  LILDEVHRLDKGKQDFLLPYLEN---GMIILIGATTANPYHAINPAIRSRTQIFELEPLT 150

Query: 145 DN--KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS----YC 195
               K  L   + +    L     SI  +A +      GGD  ++ N L+          
Sbjct: 151 PELIKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESA 210

Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             +I IT +  ++ +           D H   +     +        A+      + +  
Sbjct: 211 DGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD 270

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKN 304
                    +  +   E I +    +       IQ  E+   P  R  +    + +    
Sbjct: 271 LESIARRLLVIAY---EDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSP 327

Query: 305 LVRETLHKIDHRIHLAR 321
                +  ID  +   R
Sbjct: 328 KSNSAILAIDEALADIR 344


>gi|158313938|ref|YP_001506446.1| DNA polymerase III, delta subunit [Frankia sp. EAN1pec]
 gi|158109343|gb|ABW11540.1| DNA polymerase III, delta subunit [Frankia sp. EAN1pec]
          Length = 333

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 89/273 (32%), Gaps = 29/273 (10%)

Query: 74  INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAE 132
           + +TS+F   +++++   +   +++ D L   +   + + ++++  + + KN  L    +
Sbjct: 61  LGATSMFGGGRVLVVRGAADLAEELRDALLAYVAHPLDDVVLVVVHSGVVKNRKLVDAMK 120

Query: 133 KFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
           K  + +  +          D +   +      ++ EA + LL  +GGD         +L 
Sbjct: 121 KAGARVMPAAKITRPRDRHDFVIAEIRRLGGRMTDEAVRALLDAVGGDLREIAAVCDQLV 180

Query: 193 SYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
                  +I E  V              + +A + G +  A+ L    L        +  
Sbjct: 181 --ADTAGVIDESAVARYHRGRAEASGFAVADAAVAGDLAGALTLLRQALEGGTAPVLVTS 238

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLV------ 306
                 + L +   +      S   + +        ++R   Q + R W+   +      
Sbjct: 239 AIAGGLRDLAR---VSAVGGGSKWDVAKALGMPDWKVERA--QRAARSWSDAGLARAIRA 293

Query: 307 ---------------RETLHKIDHRIHLARKKK 324
                             L ++ H +  AR + 
Sbjct: 294 VAVADAGVKGAAVDAGYALERLLHEVTQARGRG 326


>gi|225024894|ref|ZP_03714086.1| hypothetical protein EIKCOROL_01782 [Eikenella corrodens ATCC
           23834]
 gi|224942298|gb|EEG23507.1| hypothetical protein EIKCOROL_01782 [Eikenella corrodens ATCC
           23834]
          Length = 312

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI- 313
           L    +LE++    +   ++   I+ + +      ++  +++  R+         L    
Sbjct: 29  LGHRHILERLRHEADERGLAAVAIVFEPQPQEFFSRQRSVEKPFRLSPLREKLRLLRDTG 88

Query: 314 -DHRIHLARKKKYLE 327
               + + R    L 
Sbjct: 89  CLDAVWVLRFNAGLA 103


>gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381]
          Length = 392

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L +L E+       +I KEAK  L+++ GGD  A  N L   +   L D  I+ + 
Sbjct: 147 TNADLCELFEKVQKSLNFTIDKEAKNYLISSSGGDARAMFNLLD-FAL--LIDENISLKT 203

Query: 206 VKDIICD--THVLYIEE--------IINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
           +K +  +        ++         I +     I  AI      L +      +    +
Sbjct: 204 LKTLRANSIAEGANSDDTHYQIISAFIKSIRGSDIDAAIYYLARMLENGESPDFIARRLM 263


>gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2]
 gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2]
          Length = 421

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 26/184 (14%)

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII--- 210
           L     ++  EA   L    GGD  ++ N L+       E+      IT +  ++ +   
Sbjct: 169 LGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKK 228

Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
                   D H   I     +     +  A+      + +       L    ++   L  
Sbjct: 229 GFVHDKDGDAHYDVISAFQKSIRGSDVNAALHYMARLIEAGD-----LESLARRL--LVI 281

Query: 264 IHIIKECSNISFE----KIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIH 318
            +     ++        + IQ  E+   P  R  +    + +         +  +D  + 
Sbjct: 282 AYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALS 341

Query: 319 LARK 322
             R 
Sbjct: 342 DVRS 345


>gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 515

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 74/183 (40%), Gaps = 18/183 (9%)

Query: 53  FSLVVLNALEIQKNI---STFWNEINSTSLFSKKKIILIENLST-----EKKVLDCLEEI 104
           F ++ LNA + +          +   S+S+F KK +I+++ +       +   +  L ++
Sbjct: 65  FEVIELNASDKRSASVIKKVVGHAATSSSIFGKKFLIILDEVDGISGKEDAGGVSELIKV 124

Query: 105 IIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164
           I K    + II+ +N+      +R +      V  I   P +   +  ++++        
Sbjct: 125 IKK--AKNPIILTAND-AYAPAIRNLL---PYVEVIQLNPVHTNSVYKVLKKIAQKEGLD 178

Query: 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224
           +  +  +++  +  GD  ++ N+L+ L+        ++ +  + +        I + +  
Sbjct: 179 VDDKTLKMIAQHSAGDLRSAINDLEALAL----SGDLSYEAAQKLPDRKREANIFDALRV 234

Query: 225 TIQ 227
            ++
Sbjct: 235 ILK 237


>gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
 gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
 gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
 gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
 gi|258615716|ref|ZP_05713486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecium
           DO]
 gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68]
 gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
 gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
 gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
 gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
 gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
 gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
 gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
 gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a04]
 gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133C]
 gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133A]
 gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133B]
 gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a01]
 gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
 gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
 gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
 gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
 gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68]
 gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
 gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
 gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
 gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
 gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
 gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
 gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
 gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a01]
 gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133B]
 gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133A]
 gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133C]
 gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           TX0133a04]
          Length = 581

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. RCC307]
 gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. RCC307]
          Length = 719

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---- 194
           ++  L  +++ +L             +  EA+  L+   GGD  +  N L+ L+      
Sbjct: 172 DQAALHQVLDRALSDRTHGYGERSIQLDAEARAHLVEVAGGDARSLLNALE-LAVETTDA 230

Query: 195 -CLEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLAS 243
                I IT    ++ I           D H   I   I +        A+      + +
Sbjct: 231 NASGAIQITLAVAEESIQQQAVLYDKQGDAHFDTISAFIKSIRGSDPDAALFWLARMVEA 290

Query: 244 KMPSHALLHGFL 255
                 +    L
Sbjct: 291 GEDPRFIFRRLL 302


>gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium
           cellulolyticum H10]
 gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium
           cellulolyticum H10]
          Length = 562

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 2/115 (1%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
                +I  +   ++     G    + + L +          IT Q+V D I      +I
Sbjct: 192 QASGINIDDDGALLIARLADGALRDALSILDQCI--AEGSTTITYQNVLDAIGIVSDDFI 249

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
            EI++      +   +   +   A            +  F+ L    + K   NI
Sbjct: 250 SEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKNPENI 304


>gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC
           14580]
 gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580]
          Length = 421

 Score = 37.6 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 26/184 (14%)

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII--- 210
           L     ++  EA   L    GGD  ++ N L+       E+      IT +  ++ +   
Sbjct: 169 LGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKK 228

Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
                   D H   I     +     +  A+      + +       L    ++   L  
Sbjct: 229 SFVHDKDGDAHYDVISAFQKSIRGSDVNAALHYMARLIEAGD-----LESLARRL--LVI 281

Query: 264 IHIIKECSNISFE----KIIQKTEKNIIPMKR-NILQESLRIWNKNLVRETLHKIDHRIH 318
            +     ++        + IQ  E+   P  R  +    + +         +  +D  + 
Sbjct: 282 AYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALS 341

Query: 319 LARK 322
             R 
Sbjct: 342 DVRS 345


>gi|312962441|ref|ZP_07776932.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens
           WH6]
 gi|311283368|gb|EFQ61958.1| DNA polymerase III, gamma and tau subunits [Pseudomonas fluorescens
           WH6]
          Length = 684

 Score = 37.6 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/136 (8%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC--- 270
               + ++++A I+G     +             + +L   L     +     + E    
Sbjct: 245 DHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 --SNISFEKIIQKTEK 284
              +      + +   
Sbjct: 305 GHGDRDRVLALAQALP 320


>gi|260205716|ref|ZP_05773207.1| hypothetical protein MtubK8_15594 [Mycobacterium tuberculosis K85]
          Length = 322

 Score = 37.6 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 55  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 283 TAMRLVAE 290


>gi|229591983|ref|YP_002874102.1| DNA polymerase III subunits gamma and tau [Pseudomonas fluorescens
           SBW25]
 gi|229363849|emb|CAY51308.1| DNA polymerase III subunit Tau [Pseudomonas fluorescens SBW25]
          Length = 688

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 40/133 (30%), Gaps = 5/133 (3%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 187 LSHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 244

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII---KEC 270
               + ++++A I+G     +             + +L   L     +     +    + 
Sbjct: 245 DHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPEGVDN 304

Query: 271 SNISFEKIIQKTE 283
            +   ++++   +
Sbjct: 305 GHGDRDRVLALAQ 317


>gi|19112071|ref|NP_595279.1| coatomer alpha subunit (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74698003|sp|Q96WV5|COPA_SCHPO RecName: Full=Putative coatomer subunit alpha; AltName:
            Full=Alpha-coat protein; Short=Alpha-COP
 gi|14018381|emb|CAC38349.1| coatomer alpha subunit (predicted) [Schizosaccharomyces pombe]
          Length = 1207

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 203  EQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
            E+ V D++ D       + I    +     A  +A     S M       G +  F  L+
Sbjct: 887  EEAVNDVVDDASAFVGADEIFLWKRNSPLAADHIAAGDFESAMKILNKQVGAI-NFSPLK 945

Query: 263  KIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL-----HKIDHRI 317
               +    ++  +   I   +  +  ++RN  + + R      +   L     H++    
Sbjct: 946  TRFLEIYTASRVYLPTISGLDPLVSYVRRNA-ETAERSQALPFITRNLASIKSHELHEAY 1004

Query: 318  HLARKKKYLEKNIIFQTILYIAQTACKN 345
             L +  K LE  I F++I+Y+A T   N
Sbjct: 1005 RLVKANKILEAQICFRSIIYLALTTVAN 1032


>gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20]
          Length = 391

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L  ++L + +K I   AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDKLCTKALTLLKKQIEPSAKTYLLNNSAGDARAL---LNLLDLSAKIEDPITLET 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           ++ +           D     +   +  +++G     +I      +A       +    
Sbjct: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265


>gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
 gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
          Length = 562

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ +   +      +  EA QI+     G    + + + +  SY   D  +T + V  
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLVDQAISYS--DETVTTEDVLA 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +       Y+  ++    +  +  A+ + D  +         +  F+  ++
Sbjct: 240 VTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYR 290


>gi|188584657|ref|YP_001916202.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 589

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
           +  L ++I+        S +KE+  I+     G    + + L +  S+      +   HV
Sbjct: 184 EKQLQNVIDSK----NLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHV 239

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHI 266
            ++          +++ A  +G +   + +      S       L+  +   + L    +
Sbjct: 240 LEVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKL 299

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNIL--------QESLRIWNKNL---VRETLHKI 313
                 + +  +    + +    K  ++        ++    W++N    V    ++I
Sbjct: 300 KGPSDQLLWGSVDSVKKLHKYFTKDELISMIDFLSEKQQAMKWSQNRRLIVEMAFYRI 357


>gi|153007366|ref|YP_001368581.1| DNA polymerase III subunits gamma and tau [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559254|gb|ABS12752.1| DNA polymerase III, subunits gamma and tau [Ochrobactrum anthropi
           ATCC 49188]
          Length = 605

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 65/203 (32%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       Q ++   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEQIAVDDTSLAMIARAGEGSARDSLSIFDQAI--AHGAGTVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      ++  ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQKLSVRVLSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A ++
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRS 384


>gi|113474658|ref|YP_720719.1| DNA polymerase III s gamma and tau [Trichodesmium erythraeum
           IMS101]
 gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium
           erythraeum IMS101]
          Length = 695

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 23/169 (13%)

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIE--------------------ESLLIGQKSIS 166
           L+ + E    V+ I    D +  L  +I                        +  +  I+
Sbjct: 142 LKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAMVKHLHHIAIEEKIDIT 201

Query: 167 KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATI 226
            EA Q++     G    + + L +LS        IT + V D++       +  ++ A  
Sbjct: 202 TEAIQMIAQIAQGGLRDAESLLDQLSLLAG---EITVERVWDLVGAVPERDLMVLVEAIA 258

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISF 275
                  +      +        +L      ++ L          N+  
Sbjct: 259 ADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTAPTSKNLVA 307


>gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 21/131 (16%)

Query: 146 NKIHLMDLIEESLLIGQKS-------ISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196
            K  +  LI  +L   ++        I ++A + L    GGD   + N ++         
Sbjct: 169 EKEDIRKLIMRALTDEERGMGSYHAIIDEDALEFLADICGGDARNALNAIELGVLTTERS 228

Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
               I IT   V + I           D H   I   I +        A+      L + 
Sbjct: 229 EDGKIHITIDVVSECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVFYLAKMLYAG 288

Query: 245 MPSHALLHGFL 255
                +    +
Sbjct: 289 EDVKFIARRIM 299


>gi|289575106|ref|ZP_06455333.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539537|gb|EFD44115.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 316

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 49  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 277 TAMRLVAE 284


>gi|332217084|ref|XP_003257685.1| PREDICTED: regulator of nonsense transcripts 2-like [Nomascus
           leucogenys]
          Length = 1272

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  ++          +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKS 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|302341641|ref|YP_003806170.1| glycosyl transferase family 2 [Desulfarculus baarsii DSM 2075]
 gi|301638254|gb|ADK83576.1| glycosyl transferase family 2 [Desulfarculus baarsii DSM 2075]
          Length = 417

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 54  SLVVLNALEIQKNISTFWNE--------INSTSL---FSKKK-IILIENLSTEKKVLDCL 101
            +  + + +I   I  F NE        + +  L   F  K+ +ILI +  +     +  
Sbjct: 14  RIEEIGSADILMGIPCFNNEQTIVHVIQMLTHGLAKHFGDKRSVILIADGGSTDDTREMA 73

Query: 102 EEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC 142
            +  IK     I+ I      K + LR I E    +   +C
Sbjct: 74  RDFEIKPWQEKIVSIYRGPGGKGSALRSIFEAAARLKVKAC 114


>gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
           NAS-14.1]
 gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
           NAS-14.1]
          Length = 582

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+ +A  ++     G    + + L +           T   
Sbjct: 188 EPEVMIALMRKIATAEGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       +      A+L   
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDL 294


>gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum
           DSM 5427]
 gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum
           DSM 5427]
          Length = 537

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 1/115 (0%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              + + +   +   +  I ++A   +     G    + + L++  S+   +  IT   V
Sbjct: 180 AKEIEETLISYMQTEKIDIEEKALAYIARLADGGMRDALSILEQSISFYFGE-TITLDKV 238

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
             ++       + E+I+A         + L +            +   L+  + L
Sbjct: 239 LYLVGAVDSNILFEMIDAIAGKDATKVLELCEEVNRQGRSMRQFVSDLLEHSRNL 293


>gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
 gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
          Length = 650

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 3/120 (2%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +         +I+ +A  ++     G    + + L +L+        +T   V D++   
Sbjct: 189 LSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVG---EVTPDKVWDLVGSV 245

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNI 273
               +  ++NA  Q +    +  +   L S      +L      ++ L          ++
Sbjct: 246 SEQDLIALLNAIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDLLIAQTASNRQDL 305


>gi|15841931|ref|NP_336968.1| hypothetical protein MT2486 [Mycobacterium tuberculosis CDC1551]
 gi|148823616|ref|YP_001288370.1| hypothetical protein TBFG_12441 [Mycobacterium tuberculosis F11]
 gi|167969730|ref|ZP_02552007.1| hypothetical protein MtubH3_17575 [Mycobacterium tuberculosis
           H37Ra]
 gi|215412165|ref|ZP_03420929.1| hypothetical protein Mtub9_12562 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427795|ref|ZP_03425714.1| hypothetical protein MtubT9_15977 [Mycobacterium tuberculosis T92]
 gi|215446657|ref|ZP_03433409.1| hypothetical protein MtubT_12204 [Mycobacterium tuberculosis T85]
 gi|218754142|ref|ZP_03532938.1| hypothetical protein MtubG1_12239 [Mycobacterium tuberculosis GM
           1503]
 gi|219558408|ref|ZP_03537484.1| hypothetical protein MtubT1_14332 [Mycobacterium tuberculosis T17]
 gi|253798509|ref|YP_003031510.1| hypothetical protein TBMG_01561 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232551|ref|ZP_04925878.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254365188|ref|ZP_04981234.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551460|ref|ZP_05141907.1| hypothetical protein Mtube_13539 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187419|ref|ZP_05764893.1| hypothetical protein MtubCP_15501 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553797|ref|ZP_06443007.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289758541|ref|ZP_06517919.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294994479|ref|ZP_06800170.1| hypothetical protein Mtub2_08183 [Mycobacterium tuberculosis 210]
 gi|297732009|ref|ZP_06961127.1| hypothetical protein MtubKR_13014 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525895|ref|ZP_07013304.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776680|ref|ZP_07415017.1| hypothetical protein TMAG_02972 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780454|ref|ZP_07418791.1| hypothetical protein TMBG_00956 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785204|ref|ZP_07423526.1| hypothetical protein TMCG_00512 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789565|ref|ZP_07427887.1| hypothetical protein TMDG_00891 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793890|ref|ZP_07432192.1| hypothetical protein TMEG_02779 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798287|ref|ZP_07436589.1| hypothetical protein TMFG_01377 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804162|ref|ZP_07440830.1| hypothetical protein TMHG_01607 [Mycobacterium tuberculosis
           SUMu008]
 gi|306808733|ref|ZP_07445401.1| hypothetical protein TMGG_00975 [Mycobacterium tuberculosis
           SUMu007]
 gi|306972792|ref|ZP_07485453.1| hypothetical protein TMJG_00681 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080497|ref|ZP_07489667.1| hypothetical protein TMKG_00675 [Mycobacterium tuberculosis
           SUMu011]
 gi|307085095|ref|ZP_07494208.1| hypothetical protein TMLG_02165 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659344|ref|ZP_07816224.1| hypothetical protein MtubKV_13029 [Mycobacterium tuberculosis KZN
           V2475]
 gi|13882202|gb|AAK46782.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601610|gb|EAY60620.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150702|gb|EBA42747.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148722143|gb|ABR06768.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320012|gb|ACT24615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289438429|gb|EFD20922.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289714105|gb|EFD78117.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495689|gb|EFI30983.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214929|gb|EFO74328.1| hypothetical protein TMAG_02972 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326690|gb|EFP15541.1| hypothetical protein TMBG_00956 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330118|gb|EFP18969.1| hypothetical protein TMCG_00512 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333958|gb|EFP22809.1| hypothetical protein TMDG_00891 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337770|gb|EFP26621.1| hypothetical protein TMEG_02779 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341432|gb|EFP30283.1| hypothetical protein TMFG_01377 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344928|gb|EFP33779.1| hypothetical protein TMGG_00975 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349239|gb|EFP38090.1| hypothetical protein TMHG_01607 [Mycobacterium tuberculosis
           SUMu008]
 gi|308357804|gb|EFP46655.1| hypothetical protein TMJG_00681 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361749|gb|EFP50600.1| hypothetical protein TMKG_00675 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365359|gb|EFP54210.1| hypothetical protein TMLG_02165 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719010|gb|EGB28159.1| hypothetical protein TMMG_01705 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328458277|gb|AEB03700.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 322

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 55  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 114

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 115 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 170

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 171 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 228

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 229 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 282

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 283 TAMRLVAE 290


>gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
 gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
 gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           PC4.1]
 gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
 gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
 gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
 gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
 gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
           PC4.1]
          Length = 581

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     +    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
          Length = 440

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSL 79
           +   + YG        L     ++  +     F +   ++  +  +I T     + + ++
Sbjct: 41  YKAVLLYGPPGVGKTTLAEALARDYKLEL---FEMNASDSRNLN-DIRTMAERASITGTI 96

Query: 80  FSKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--A 131
           F  K K+IL++     N   +   +D + E+I  N   + II+ +N+   + +LR +  A
Sbjct: 97  FGIKGKLILLDEVDGLNARADAGAIDAILELI--NKTKYPIILTAND-PWDPSLRPLRNA 153

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            K   +  ++ YP     L  ++++     + +   EA   ++    GD   +R  +  L
Sbjct: 154 VKMIELKRLTKYP-----LKRILKKICEAEKITCEDEALDFIIEQSEGD---ARYAINML 205

Query: 192 SSYCLEDILITEQHVKDII 210
                    +T    K+++
Sbjct: 206 QGVAEGYGRVTLDMAKNLV 224


>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
 gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
           hafniense DCB-2]
          Length = 554

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           +   +++      + +  EA QI+     G    + + L +       D  +  + V  +
Sbjct: 183 IHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLL---DGKLGVEQVYQV 239

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +      +  ++++  + G    A+      +   M    ++   L   +       +  
Sbjct: 240 LGMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQ-----ALLY 294

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIW------NKNLVRETLH-KIDHRIHL 319
            S  +F ++     +++    + +  ++L  W       ++ ++   + ++   + L
Sbjct: 295 ASTQAFPQVAPHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLL 351


>gi|294813917|ref|ZP_06772560.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326516|gb|EFG08159.1| DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
          Length = 481

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%)

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T      ++  T    ++ +++A   G    A  + D  +         +   L++
Sbjct: 272 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 331

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314
            + L  +             +    EK +I    ++++        +    +      ++
Sbjct: 332 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 380

Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349
             +   R      L+ + I  + +L  A    ++    
Sbjct: 381 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 418


>gi|15609550|ref|NP_216929.1| hypothetical protein Rv2413c [Mycobacterium tuberculosis H37Rv]
 gi|31793592|ref|NP_856085.1| hypothetical protein Mb2436c [Mycobacterium bovis AF2122/97]
 gi|121638294|ref|YP_978518.1| hypothetical protein BCG_2429c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662247|ref|YP_001283770.1| hypothetical protein MRA_2438 [Mycobacterium tuberculosis H37Ra]
 gi|224990788|ref|YP_002645475.1| hypothetical protein JTY_2423 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289448055|ref|ZP_06437799.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289570561|ref|ZP_06450788.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289751018|ref|ZP_06510396.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289762580|ref|ZP_06521958.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297635017|ref|ZP_06952797.1| hypothetical protein MtubK4_12889 [Mycobacterium tuberculosis KZN
           4207]
 gi|1655646|emb|CAB03745.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31619185|emb|CAD97297.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493942|emb|CAL72417.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148506399|gb|ABQ74208.1| hypothetical protein MRA_2438 [Mycobacterium tuberculosis H37Ra]
 gi|224773901|dbj|BAH26707.1| hypothetical protein JTY_2423 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289421013|gb|EFD18214.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289544315|gb|EFD47963.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289691605|gb|EFD59034.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289710086|gb|EFD74102.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|326904030|gb|EGE50963.1| hypothetical protein TBPG_01919 [Mycobacterium tuberculosis W-148]
          Length = 316

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIK--NICNHIIIIKSNEIKKNN---TL 127
           E+ S SLF++++I+++   +   K    + E           ++++ S   +  +    L
Sbjct: 49  ELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQL 108

Query: 128 RKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNE 187
           R +  +      I           D I       +  +  E    LL  +G D     + 
Sbjct: 109 RSMGAQVHPCARI----TKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASA 164

Query: 188 LQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
             +L         +    V+        +   +I +  + G +  A     + +    P 
Sbjct: 165 CSQLV--ADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPL 222

Query: 248 HALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307
             L     +    + +        +    ++  +      P +    Q+  R W+++ V 
Sbjct: 223 VVLADALAEAVHTIGR----VGPQSGDPYRLAAQLGMP--PWRVQKAQKQARRWSRDTVA 276

Query: 308 ETLHKIDH 315
             +  +  
Sbjct: 277 TAMRLVAE 284


>gi|309806845|ref|ZP_07700833.1| putative DNA polymerase III, delta subunit [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166760|gb|EFO68951.1| putative DNA polymerase III, delta subunit [Lactobacillus iners
           LactinV 03V1-b]
          Length = 294

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 99/242 (40%), Gaps = 17/242 (7%)

Query: 53  FSLVVLNALE-IQKNISTFWNEINSTSLFSKKKIILIENLS--------TEKKVLDCLEE 103
           FS   L  ++ ++  I      ++ +SLFS +++I+++N           + K L+ L++
Sbjct: 7   FSNYDLTYVDVLESGIDGLIATMSESSLFSLQRLIIVKNPIFLSTKFVVKDSKQLEKLKQ 66

Query: 104 IIIK-NICNHIIIIKSN--EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           +I   +I + +I+  +N  +I K   + K+  K  +V+  +        +  +++     
Sbjct: 67  LIDNLSILDDLIVFVANYEKIDKRKAIVKLLIKNVNVVETNF---KAQEVAKVLKSIAAA 123

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
            +     +A   L+         + N   KL +  +E   I  + VK  I  +    + E
Sbjct: 124 EKIKFIGDAFTELIKRSDNVFSLALNNYLKLKN-IVEGKEILPEVVKSNIDQSLSENVFE 182

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           I+ A        A    D  + + +   ALL  F  + + L  + I+ +      ++I+ 
Sbjct: 183 IMTAIFNKNYVEANRRLDEQINNGLTPIALLAIFESQLEFLLCVKIL-QKRGWVKDQIVD 241

Query: 281 KT 282
           + 
Sbjct: 242 EL 243


>gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
 gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
          Length = 391

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE-DILITEQHV 206
             L  L++++L  G+  + ++A++ L+A+ GGD  A      KL  +       IT   +
Sbjct: 152 ASLEKLLQKALQRGEIMLERDAQEYLIASSGGDARAML----KLLEFASNIQSKITLDTL 207

Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           K +  +       E           I +        AI      +     +  +    
Sbjct: 208 KSLRPNALQAGSSEAGVHYDLASALIKSIRGSDADAAIYYLARLIDGGESADFIARRL 265


>gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis
           HTCC2601]
 gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp.
           HTCC2601]
          Length = 588

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+       Q  I+ +A  ++     G    + + L +           T + 
Sbjct: 189 EPEVMISLLRRIATAEQAEITDDALALVTRAAEGSARDATSLLDQAI--SHGAGETTAEQ 246

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++    + G    A+       A      A+L   
Sbjct: 247 VRAMLGLADRGRVMDLFEKIMYGDAPGALTELSQQYADGADPLAVLRDL 295


>gi|223934153|ref|ZP_03626095.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|330833714|ref|YP_004402539.1| AAA ATPase central domain-containing protein [Streptococcus suis
           ST3]
 gi|223897175|gb|EEF63594.1| AAA ATPase central domain protein [Streptococcus suis 89/1591]
 gi|329307937|gb|AEB82353.1| AAA ATPase central domain protein [Streptococcus suis ST3]
          Length = 428

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210
            +I  EA   L     GD  A+ N L+               I    V++ +        
Sbjct: 174 VTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMD 233

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
              D H   +  +  +     +  ++  A   + ++          +  ++ +   +   
Sbjct: 234 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 293

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327
           +   ++  +  QK      P  R ++   +               +D  +   RK  +L 
Sbjct: 294 QIHTVTALEAAQKIG---FPEARILIANVVIDLALSPKSNSAYLAMDAALADLRKNGHLP 350

Query: 328 KN 329
             
Sbjct: 351 IP 352


>gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
           15606]
 gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
           15606]
          Length = 599

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151
              +   + + +   + I I+               EK   +  I      Y   ++ + 
Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183

Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
           + IE           +   EA  ++     G    + +   + +S+C     IT Q V +
Sbjct: 184 NTIEHLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
            +      Y  +I++  +  K+   ++L +  L+       L+ G     + +       
Sbjct: 242 DLNVLDSDYYFKIVDFALSNKVSEIMVLVNNILSKGFDGGNLISGLACHVRNVLMAR--- 298

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNI----LQESLRIWNKNLVRE 308
           + + +   +  ++  K      +      L ++L++ N+  +  
Sbjct: 299 DETTLPLLETSEQQRKKYHEQAKKCPVQYLYQALKLLNQCDINY 342


>gi|172055031|ref|YP_001806358.1| putative DNA polymerase III, subunit delta [Cyanothece sp. ATCC
           51142]
 gi|171701312|gb|ACB54292.1| putative DNA polymerase III, delta subunit [Cyanothece sp. ATCC
           51142]
          Length = 306

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 33/267 (12%)

Query: 23  VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82
           +++  G D     E I    K      ++ F++V L              +  S  LFS 
Sbjct: 7   LYVIAGDDTFRKSEKIAAIIK---EGDYERFNVVSLEDA---------IRDALSPGLFS- 53

Query: 83  KKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT---SVLA 139
           KK ++ E      K    LE ++      + +I+    +     L K   K      + A
Sbjct: 54  KKAMVFEGKEIPYKDSKPLEPVVNS---ENAVILDITSVDGRTKLGKWLNKQKCVERINA 110

Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKE----AKQILLANLGGDRIASRNELQKLSSYC 195
           ++ + ++K      I+  L +    +  +    AKQ LL  +G D    + EL+ + +Y 
Sbjct: 111 LNQFQEDK------IKAELAMRSLKLGLDLSIHAKQYLLEAVGPDIGRMQRELELIKAY- 163

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
             D  +    +  ++ D      +  +   +              +   +    +L   +
Sbjct: 164 FGDGQVLATELPTLVPDYAQTSYQ--LATALTEFPKTVYERTQSLIDLGIHPLQILATLI 221

Query: 256 QKFQLLEKIHIIKECSNISFEKIIQKT 282
            + + L    I  E S ++ E+I ++ 
Sbjct: 222 NRIEKLMLTAIGIE-SGLAREQIAEEL 247


>gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
 gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
          Length = 578

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+ +A  ++     G    + + L +           T   
Sbjct: 188 EPEVMITLMRKIASAEGAEIADDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       +      A+L   
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALNELSSQYSDGADPMAVLRDL 294


>gi|329767046|ref|ZP_08258574.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341]
 gi|328837771|gb|EGF87396.1| hypothetical protein HMPREF0428_00271 [Gemella haemolysans M341]
          Length = 571

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 33/262 (12%)

Query: 9   FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNIS 68
            ++ +     +SH  ++FYGS       +   F     +  ++ +    ++ +EI    +
Sbjct: 26  VLKNAIDKDQISH-AYLFYGSRGTGKTSIAKIFAN--EVNKNEEYQKENVDIIEIDAASN 82

Query: 69  TFWNEINST-------SLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNE 120
              +E+              K K+ +I+ +        + L + + +   + I I+    
Sbjct: 83  NGVDEVRDIKEAIKFLPTEGKYKVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFIL---- 138

Query: 121 IKKNNTLRKIAEKFTSVLAI--SCYPDNKIHL--MDLIEE---SLLIGQKSISKEAKQIL 173
                      E       I   C      +L    LI+            I   A + +
Sbjct: 139 --------ATTEIHKIPATILSRCQRFEFKNLSQEQLIDRLKYISEKESLVIEDAAIEKI 190

Query: 174 LANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNA 233
                G    + + L ++S+Y      IT  H+ ++        I       +QG +  +
Sbjct: 191 ATLAKGGLRDAISILDQVSNYS---EEITLNHILEVTSSISEDDILVFYRNLLQGDVTKS 247

Query: 234 IMLADFFLASKMPSHALLHGFL 255
           ++  + F++    +  LL+  +
Sbjct: 248 LLTYNNFVSQAKDTKLLLNDLI 269


>gi|326329503|ref|ZP_08195827.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae
           bacterium Broad-1]
 gi|325952829|gb|EGD44845.1| DNA polymerase III, subunits gamma and tau [Nocardioidaceae
           bacterium Broad-1]
          Length = 667

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 60/190 (31%), Gaps = 12/190 (6%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           + D I         ++   A  ++     G    S + + +L      +  +T +    +
Sbjct: 292 VSDYIATLCEKEGINVEPAALPLVARAGAGSMRDSLSVMDQLLGGAGPEG-VTYELAAGL 350

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++E+++A           + D  + +           L++ + L  +  + +
Sbjct: 351 LGYTPDALLDEVVDAFAAHDGAAVFGVIDKIIETGQDPRRFTEDLLRRLRDLVIVKAVPD 410

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR---KKKYL 326
                   + +   +        ++ ++ R    + +      +   +   R     + L
Sbjct: 411 APATGLIDVSEDGGE-------RLVAQAGRF-GPHDLSRAADAVATGLTEMRGATAPRLL 462

Query: 327 EKNIIFQTIL 336
            + I  + +L
Sbjct: 463 LELICARVLL 472


>gi|330945331|gb|EGH46948.1| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 327

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/117 (8%), Positives = 33/117 (28%), Gaps = 2/117 (1%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +   L +       +A  +L     G    + +   +       +  +    V+ ++   
Sbjct: 60  LTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAI--AFGEGKVMAADVRAMLGTL 117

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
               + +++ A ++G     +             + +L   L     +     + E 
Sbjct: 118 DHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPEG 174


>gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 451

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 25/135 (18%)

Query: 147 KIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
           +  ++ ++E +       L       S EA   + A   GD  A+   L+ +  Y     
Sbjct: 172 ERDIVTILERAATDPVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARK 231

Query: 200 --------LITEQHVKDIIC------DTHVLYIEEIINA---TIQG-KIYNAIMLADFFL 241
                    IT + V   +       D        +I+A   +++G     AI   +  +
Sbjct: 232 GAGGKTPSAITPEDVAAAVEKKALRYDKSGEEHFNLISAFHKSLRGSDPDGAIYWLERMM 291

Query: 242 ASKMPSHALLHGFLQ 256
           A+      L+   ++
Sbjct: 292 AAGEDPLYLIRRMVR 306


>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 546

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/184 (9%), Positives = 46/184 (25%), Gaps = 22/184 (11%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDN-----KI 148
              + L + + +   + + I+               E       I   C   +       
Sbjct: 134 GAFNALLKTLEEPPAHAVFIL------------ATTEPHKVPATIISRCQRFDFKAISVN 181

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            + + +            + A   +     G    + + L +          +T +HV  
Sbjct: 182 DIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSILDQAI--AFGTETLTLEHVHS 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           +          E+ +  I   +  A       L+    +  L++  +  F     +    
Sbjct: 240 VTGSVGREDFFELTDYIITHDVKEAFKQFHRLLSEGKETTRLVNDLI-YFLRDIIMDYAA 298

Query: 269 ECSN 272
           +   
Sbjct: 299 DNKG 302


>gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999]
          Length = 440

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 19/129 (14%)

Query: 146 NKIHLMDLIEESLLIGQ------KSISKEAKQILLANLGGD--RIASRNEL-QKLSSYCL 196
               ++ + +++L   +       SI  +A   L +   GD  R     EL  +LS    
Sbjct: 155 TDADIIQICQQALANDEWLCACAVSIDDDALMTLASLSSGDARRALLYLELAAQLSQSAD 214

Query: 197 EDILITEQHVKDIIC------DTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMP 246
               +T+QHV           D    +  ++++A            A+     +L +   
Sbjct: 215 GSHRVTQQHVAQAAGQKVAQFDQQGDHYYDVLSAFHKSVRGSSSDGALYWFARYLTANSD 274

Query: 247 SHALLHGFL 255
              ++   L
Sbjct: 275 PVPIMRRLL 283


>gi|118444607|ref|YP_878358.1| recombination factor protein RarA [Clostridium novyi NT]
 gi|118135063|gb|ABK62107.1| ATPase, AAA family [Clostridium novyi NT]
          Length = 419

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 19/182 (10%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL----ITEQHVKDII---- 210
              +  I K+A  I+    GGD  AS N L+        +      IT+  +K+ +    
Sbjct: 189 GKLKVKIHKDAINIIAKLSGGDGRASLNTLELAILSTSRNNDGFIYITKDIIKECVQKPM 248

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                  D H       I +        A+      +        ++   +        +
Sbjct: 249 VNYDATGDNHYDITSAFIKSIRGSNPDAALYWFGRMILGGEDPRFIVRRLIVHASEDIGM 308

Query: 265 HIIKECSNISFEKIIQKTEKNI-IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHLARK 322
              K+ + ++         + + +P  R  + +++            L  +D  I  AR 
Sbjct: 309 ---KDPNAMNIAHAAWNALETVGMPEARIPIAQAIIYLSTAPKSNAVLVAVDKAIEDARV 365

Query: 323 KK 324
            +
Sbjct: 366 NQ 367


>gi|110668631|ref|YP_658442.1| replication factor C large subunit [Haloquadratum walsbyi DSM
           16790]
 gi|121687203|sp|Q18GQ9|RFCL_HALWD RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|109626378|emb|CAJ52837.1| replication factor C large subunit [Haloquadratum walsbyi DSM
           16790]
          Length = 516

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 60/195 (30%), Gaps = 28/195 (14%)

Query: 54  SLVVLNALE--IQKNISTFWNEINSTSLFSK--------KKIILIENLST-----EKKVL 98
             V LNA +      I          +  +         +++I+++         ++   
Sbjct: 64  ETVELNASDQRTSDVIERLAGRAAKNATLAGAVSGTTSTRQLIIMDEADNIHYQYDRGGK 123

Query: 99  DCLEEIIIKNICNHIIII-KSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEES 157
             +  ++       ++I  +  ++ +   LR  A+       I     +   ++ ++   
Sbjct: 124 QAVTTLLKDANQPIVLIANEYYDMSRG--LRNAAQD------IEFRDISARSIVPVLRNI 175

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLY 217
           L        + A + +     GD    R  ++ L +       IT   VK        + 
Sbjct: 176 LRKENIEFEEAALKQIAEVNSGD---LRAAIKDLQTTVEGSDRITVDDVKTG-GRDRAMG 231

Query: 218 IEEIINATIQGKIYN 232
           +   +++ ++     
Sbjct: 232 LFSFLDSVLKEDAAE 246


>gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
 gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
          Length = 400

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           N   +++ +E  L     S    A  ++  +  G    + + L +  S+   +  IT   
Sbjct: 179 NTADIVEHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFS--EGTITLDD 236

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
              +        ++  ++A ++ ++  A+   +  LA+   S   L   LQ  + L    
Sbjct: 237 AMQVTGSLTDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLMYQ 296


>gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gamma and tau [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948924|gb|AEA22621.1| DNA polymerase III, subunits gamma and tau [Pseudonocardia
           dioxanivorans CB1190]
          Length = 829

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L  L+E        +++     +++   GG    + + L +L +   E+  +T +   
Sbjct: 192 GTLRALLERICAEEGVTVAPAVYPLVIRAGGGSARDTLSVLDQLLAGAGEEG-VTYERAV 250

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++  T V  ++++++    G         D  + +           +Q+ + L  +  +
Sbjct: 251 ALLGVTDVALVDDVVDGLAAGDSAAVYEAVDRLVEAGHDPRRFAADLMQRLRDLMLLQAV 310

Query: 268 KECSNI 273
            + +  
Sbjct: 311 PDAAGQ 316


>gi|90419122|ref|ZP_01227033.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
 gi|90337202|gb|EAS50907.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
          Length = 411

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 23/188 (12%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH---- 214
                +++      + A  GG R+  R EL+ L     ED L     +            
Sbjct: 188 AENAANLAPGFLAAMEARYGGSRLG-RQELEGLMLEAREDALFDVAAIDAARVRVAPELR 246

Query: 215 --VLYIEEIINATIQGK---IYNAIMLAD-------FFLASKMPSHALLHGFLQKFQLLE 262
             V+ ++    AT +     I  A   AD                H      +  F+ LE
Sbjct: 247 RVVVAVDPPATATTRSDACGIIAAGHAADGTIYVLADASRRGAKPHQWAGAAVALFERLE 306

Query: 263 KIHIIKEC--SNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320
              I+ E        E +I+    ++       ++ S   W +      L++   R+  A
Sbjct: 307 ADRIVAEVNQGGDMVEAVIRACAPSVPFR---AVRASRGKWLRAEPVAALYE-QGRVRHA 362

Query: 321 RKKKYLEK 328
            +   LE 
Sbjct: 363 GRFPELED 370


>gi|298675294|ref|YP_003727044.1| AAA ATPase central domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288282|gb|ADI74248.1| AAA ATPase central domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 499

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 85/230 (36%), Gaps = 35/230 (15%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPF--SLVVLNALE--IQKNISTFWNEIN-S 76
              I +G             K + +    + F   ++ LNA +    + I+      + +
Sbjct: 44  RAVILHG--------RAGIGKTSTAYALANDFGWEVIELNASDQRTAEVINKIAGSASKT 95

Query: 77  TSLFS--KKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLR 128
            SLF    K++I+++     + + ++     + E I K   +  +++ +N++    +++R
Sbjct: 96  GSLFGSGGKRLIVLDEADNLHGTNDRGGARAISETIKK--TDQPVVLIANDVYGVASSIR 153

Query: 129 KIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNEL 188
                    L I         +   +++       +   E+ + L  +  GD  ++ N+L
Sbjct: 154 N------QCLEIKFNNVQTRSIAASLKKICKKEDINCDDESIEKLAQDSDGDVRSAINDL 207

Query: 189 QKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG-KIYNAIMLA 237
           Q      +    +  + +     DT    I +++    +G  I +A+   
Sbjct: 208 QA----AVSGNELHIEDIATSQRDTEE-SIFKVLTKIFKGHDINDALNAT 252


>gi|46579605|ref|YP_010413.1| hypothetical protein DVU1194 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449020|gb|AAS95672.1| hypothetical protein DVU_1194 [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 368

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120
           +     FW  +    LF   + +++ N       V   L   + +          ++   
Sbjct: 83  EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 141

Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162
                      E+        +  + C  + +           ++  +   +++      
Sbjct: 142 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 191

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
              +  A   + A +  D  A+  EL KL      D  +  + +  ++     L I   I
Sbjct: 192 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGLDATLGPE-LAKLVSHEPDLDIFAFI 250

Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264
            A   G                       +   L++ + L ++
Sbjct: 251 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 293


>gi|307942775|ref|ZP_07658120.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
 gi|307773571|gb|EFO32787.1| DNA polymerase III subunit tau [Roseibium sp. TrichSKD4]
          Length = 610

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS-YCLEDILITEQ 204
           ++  L+ L+       +  IS EA  +L+A  G    ++R+ L  L          +   
Sbjct: 202 DQAKLVGLLRRISDAEEIQISDEAL-LLIARAGE--GSARDSLSLLDQAMARASGPMEAD 258

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
            ++ ++       + ++    + G++  A+               +L        L+ ++
Sbjct: 259 DLRQMLGLADRARVIDLFEHVMAGRVAEAMDELQAQYEVGADPAIVLTDLADFTHLVTRV 318

Query: 265 HIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHR 316
            +  + ++ +    +++T       ++  ++   R W   ++ + + ++   
Sbjct: 319 KVAPKAADEASVTEVERTR-GREFAEKLSIRILSRAW--QILLKGVQEVQAA 367


>gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18]
 gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18]
          Length = 434

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 26/193 (13%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           E  L   + + + EA   +    GGD   + N L+  +    +   IT +  ++      
Sbjct: 181 ERGLGESELTAAPEALAFMAEQAGGDARVALNTLETAARLARD-REITLETAREASQKKP 239

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                  + H   I   I +        A+      + +      +L   +        I
Sbjct: 240 LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMIEAGEDPIFILRRMV--------I 291

Query: 265 HIIKECSN------ISFEKIIQKTEKNIIPMKRNILQESLRIW-NKNLVRETLHKIDHRI 317
              ++  N            ++      +P  R IL +++           +   I+  +
Sbjct: 292 FASEDVGNADPRGLQMAVSALEAFRLVGMPEGRIILGQAVTYLATAPKSNASYAGINAAL 351

Query: 318 HLARKKKYLEKNI 330
              R    L   +
Sbjct: 352 AEVRNSGGLAVPM 364


>gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7]
 gi|15621472|dbj|BAB65467.1| 413aa long hypothetical replication factor C large subunit
           [Sulfolobus tokodaii str. 7]
          Length = 413

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEIN-STSL 79
           +   + YG        L     ++  +     F +   ++  +  +I T     + + ++
Sbjct: 14  YKAVLLYGPPGVGKTTLAEALARDYKLEL---FEMNASDSRNLN-DIRTMAERASITGTI 69

Query: 80  FSKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKI--A 131
           F  K K+IL++     N   +   +D + E+I  N   + II+ +N+   + +LR +  A
Sbjct: 70  FGIKGKLILLDEVDGLNARADAGAIDAILELI--NKTKYPIILTAND-PWDPSLRPLRNA 126

Query: 132 EKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
            K   +  ++ YP     L  ++++     + +   EA   ++    GD   +R  +  L
Sbjct: 127 VKMIELKRLTKYP-----LKRILKKICEAEKITCEDEALDFIIEQSEGD---ARYAINML 178

Query: 192 SSYCLEDILITEQHVKDII 210
                    +T    K+++
Sbjct: 179 QGVAEGYGRVTLDMAKNLV 197


>gi|15834937|ref|NP_296696.1| hypothetical protein TC0317 [Chlamydia muridarum Nigg]
 gi|270285108|ref|ZP_06194502.1| hypothetical protein CmurN_01613 [Chlamydia muridarum Nigg]
 gi|270289129|ref|ZP_06195431.1| hypothetical protein CmurW_01673 [Chlamydia muridarum Weiss]
 gi|301336503|ref|ZP_07224705.1| hypothetical protein CmurM_01670 [Chlamydia muridarum MopnTet14]
 gi|7190359|gb|AAF39182.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 314

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLAS-K 244
           +E QKL         +    V+  +       + ++ +A ++  +     L    ++   
Sbjct: 182 SEFQKLICQIGGKSCLEASDVQSFVEKRESASLWKLRDALLRRDLSTGQSLMQSLVSDLG 241

Query: 245 MPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTE 283
               A+L+    ++  L  +  I E S     +I     
Sbjct: 242 EDPLAILNFLRSQY--LSGLRAIAEQSKDRKTQIFFAAG 278


>gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
 gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
          Length = 712

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 78/239 (32%), Gaps = 39/239 (16%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            ++    +      +  + K+ +I+ +    +   + L + + +       I  + E++K
Sbjct: 201 DDVREIIDATRFRPMQGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRK 260

Query: 124 ----------NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQIL 173
                        LR++                +  L+ L           +S +A  ++
Sbjct: 261 VPVTVLSRCQRFDLRRV---------------PQSELVGLFSRIADKEHVRLSPDALALV 305

Query: 174 LANLGGDRIASRNELQKLSS-YCLEDILITEQHV--KDIICDTHVLY----IEEIINATI 226
                G   + R+ L  L               V    +I D   L     + +++ A +
Sbjct: 306 ARAADG---SVRDGLSLLDQAIAQGTGQTDADGVIGATVISDMLGLADREVVFDLLEAVL 362

Query: 227 QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII---KECSNISFEKIIQKT 282
            GK   A+ L D   A       +L   L+    + ++  +   ++ +++   + ++ T
Sbjct: 363 TGKPEQALALLDAAYARGADPGLVLGDMLELVHTVSRLRAVPSLRDSADMPEAERVRGT 421


>gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SSC/2]
 gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 21/131 (16%)

Query: 146 NKIHLMDLI-------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-- 196
           +K  +  LI       E+ + I   +I+ +A   L     GD  ++ N ++         
Sbjct: 169 DKEDIKKLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSALNAIELGILTTEPA 228

Query: 197 --EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
               I I     ++ I           D H   I   I +        AI      + + 
Sbjct: 229 EDGKIHIDIDVAQECIQRRVTKYDKDGDNHYDVISAFIKSMRGSDPDAAIYYLARMIDAG 288

Query: 245 MPSHALLHGFL 255
                +    +
Sbjct: 289 ESVTFIARRIM 299


>gi|163757647|ref|ZP_02164736.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
           DFL-43]
 gi|162285149|gb|EDQ35431.1| DNA polymerase III subunits gamma and tau [Hoeflea phototrophica
           DFL-43]
          Length = 639

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L              I  E+  ++     G      + L +          +  Q 
Sbjct: 222 ETGALASHFSSVAAQEGIGIDDESLSMIARAAEGSVRDGLSLLDQAI--AHGGGQVDAQA 279

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + E+    + G +  A+        S      +L        L+ ++ 
Sbjct: 280 VRAMLGLADRSRVVELFGNLMAGDVAAALTGFRDQYDSGAGPSVILTDLADFTHLVTRLK 339

Query: 266 IIKECSNISFEKIIQKTE 283
            + E ++       ++  
Sbjct: 340 FVPEAADDPSLTETERER 357


>gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 456

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 144 PDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDI 199
            ++   L+   L +E    G+ SI+ +A   L+   G D  R  +  E     +    + 
Sbjct: 186 EEDIRTLVARALEDERGFAGRLSIAADALDNLVRIAGRDGRRSLTLLEAAAEGARTRGET 245

Query: 200 LITEQHVKDI----------ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            I    V               D H   +   I +     +  A+      L++      
Sbjct: 246 TIELADVAKASDGATVRYDRAGDQHYDVVSAFIKSIRGSDVDAAMHYLARMLSAGEDPRF 305

Query: 250 LLHGFL 255
           +    +
Sbjct: 306 IARRLM 311


>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|42559510|sp|Q8ZWS2|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
           subunit 2; AltName: Full=Clamp loader small subunit 2
 gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 319

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 39/238 (16%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
            +I E + +F +   +    PF LV+L+            + + S +  + ++I+ I   
Sbjct: 82  NVIRERVKEFARTAPVGKA-PFKLVILDE----------ADNMTSDAQQALRRIMEIYAQ 130

Query: 92  STEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLM 151
           +T   +L      II+ I +  ++I+ + + K     ++                     
Sbjct: 131 NTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARL--------------------- 169

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
             I E        +S +A + +     GD    R  +  L         +TE+ V   + 
Sbjct: 170 RYIAE---NEGVKVSDDALEAIYEFTQGDM---RRAINALQIAATVSKAVTEEVVAKALG 223

Query: 212 DTHVLYIEEIINATIQGKI-YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
                 + E +   ++G     A  +  F     +    ++    ++   L+    +K
Sbjct: 224 MVSPRLLRETLYEAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRLDVQEYVK 281


>gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0205]
          Length = 727

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 146 NKIHLMDLIEESLL-------IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
              HL  L+E +L             IS EA   L+   GGD  +  N L+        D
Sbjct: 170 ENRHLHQLLERALRDRERGYGERPVQISPEAAAHLVEVAGGDARSLLNALELAVETTEPD 229

Query: 199 IL----ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASK 244
                 IT    ++ I           D H   I   I +        A+      + + 
Sbjct: 230 GEGQIVITLAIAEESIQQRAVLYDKQGDAHFDTISAFIKSLRGSDPDAALFWLAKMIEAG 289

Query: 245 MPSHALLHGFL 255
                +    L
Sbjct: 290 ENPRFIFRRML 300


>gi|239904682|ref|YP_002951420.1| glycogen phosphorylase [Desulfovibrio magneticus RS-1]
 gi|239794545|dbj|BAH73534.1| glycogen phosphorylase [Desulfovibrio magneticus RS-1]
          Length = 817

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           E + I+ +   + +++      +        +L E+L  W  +L+   L +    I    
Sbjct: 333 ELMRILVDEEFLGWDEAWDICRRTFAYTNHTVLPEALETWPADLLGRVLPRHLEIIAEID 392

Query: 322 KKKYLEKNII------FQTILYIAQTACKN 345
           ++  LE  +        Q  L I   A + 
Sbjct: 393 RRFLLEVAVAHPGDQVRQNRLAIIDPASRR 422


>gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
 gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
          Length = 645

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 10/151 (6%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L   +         +I+ EA  ++     G    + + L +LS        +    V 
Sbjct: 185 ESLEGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLL---PPPVEVDAVW 241

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           D++       + ++  A    +    I      L       A+L G     + L      
Sbjct: 242 DLLGAVPEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDLVL---- 297

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESL 298
              +  + +++           +   L  SL
Sbjct: 298 ---AGTAPDRLELTAVSPQFRPQLPGLARSL 325


>gi|311743404|ref|ZP_07717211.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum
           DSM 15272]
 gi|311313472|gb|EFQ83382.1| DNA polymerase III, subunits gamma and tau [Aeromicrobium marinum
           DSM 15272]
          Length = 679

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 9/174 (5%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             L D + +     Q ++   A  +++   GG    + + L +L         +T     
Sbjct: 184 KTLGDYLLQLCSAEQVTLDTAALPLVVRAGGGSVRDTLSVLDQLLGGAGPQG-VTYDLAV 242

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++  T    ++EI++A           + D  + S           LQ+ + L  +  +
Sbjct: 243 QLLGYTPDSLLDEIVDAFAATDARTVFGVVDKVIESGQDPRRFTEDLLQRLRDLVVLRAV 302

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
                +    +           +   LQ     +    +      ID  +   R
Sbjct: 303 PTAVEVGLLDLPAD--------RTERLQAQAAGFGPAELVRIADHIDAALTEFR 348


>gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
 gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
          Length = 538

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 70/179 (39%), Gaps = 10/179 (5%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            L +I+ +   + + I+ + EI K   T+    +++   +       N   + D I+  L
Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NAKDISDNIKYIL 189

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
               + +  +A +++     G    + + L ++    +E   IT+Q + DI+       I
Sbjct: 190 NDLNRKMDDDAIKLIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
            +++N+ I+      +    + ++   P   ++   L  F+ L       E    +  +
Sbjct: 248 FKLVNSIIKKDAAEVLNNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLENIRQNNTQ 305


>gi|126340410|ref|XP_001367767.1| PREDICTED: similar to regulator of nonsense transcripts 2
           [Monodelphis domestica]
          Length = 1292

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  +++         +  I+ E K   +  +G        EL K   +   
Sbjct: 630 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFTKN 681

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 793

Query: 310 LHKI 313
           + K+
Sbjct: 794 MRKL 797


>gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase
           [Methylacidiphilum infernorum V4]
 gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase
           [Methylacidiphilum infernorum V4]
          Length = 454

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDI 209
            +++  L     SI ++  + +   +  +       L +L +Y    ++  IT +  + +
Sbjct: 287 AILKHKLKNYSLSIDEKILEFIAERIKTNVRQLEGALNRLCAYASIHKEGKITLEETQSL 346

Query: 210 ICDTHVLYIEEIINATI-------QGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLE 262
           + D   L   + I   +          I  + M++   +++      +     ++   L 
Sbjct: 347 LKDLISLQPSKTITIEMIQKRVCEAYDIRFSDMVSKRRISAIALPRMVAMYLARRLTNLS 406

Query: 263 KIHIIKECSNISFEKIIQKTE 283
              I +         ++    
Sbjct: 407 LSQIGENFGGRDHGTVLHAQR 427


>gi|269792907|ref|YP_003317811.1| Phosphoglycerate mutase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100542|gb|ACZ19529.1| Phosphoglycerate mutase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 211

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 25  IFYGSDKGL-IFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
           + +G  +GL + E+  ++ +   +   DPF        ++        + + S+ +  ++
Sbjct: 84  LDFGRWEGLTVREIEERYGEEYRLWRQDPFGRTPPGGEDLASITGRLEDFVESSGILGEE 143

Query: 84  KIILIENLSTEKKVLDCLEEI 104
           + +L+ +    + ++  L ++
Sbjct: 144 RAVLVSHGYALRVLMGVLLKV 164


>gi|253756509|ref|YP_003029649.1| ATPase [Streptococcus suis BM407]
 gi|251818973|emb|CAZ56820.1| putative ATPase [Streptococcus suis BM407]
          Length = 428

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210
            +I  EA   L     GD  A+ N L+               I    V++ +        
Sbjct: 174 ITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYISMD 233

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
              D H   +  +  +     +  ++  A   + ++          +  ++ +   +   
Sbjct: 234 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 293

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327
           +   ++  +  QK      P  R ++   +               +D  +   RK  +L 
Sbjct: 294 QIHTVTALEAAQKIG---FPEARILIANVVVDLALSPKSNSAYLAMDAALADLRKNGHLP 350

Query: 328 KN 329
             
Sbjct: 351 IP 352


>gi|291294546|ref|YP_003505944.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber
           DSM 1279]
 gi|290469505|gb|ADD26924.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber
           DSM 1279]
          Length = 890

 Score = 37.3 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 216 LYIEEIINATIQGKIYNAIMLADF-FLASKMPSHALLHGFLQKFQLLEKIHIIKECSNIS 274
             +++++ A ++G +     L     + + + +  +  G   +F  LEK+ +     +  
Sbjct: 597 AQLQDLVIAALEGDVAAYNQLIHNPQVPADLKARLVKGGIPAQFAQLEKLLLAALNGDAQ 656

Query: 275 FEKIIQK--TEKNIIPMKRN------ILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
             + +Q+          +         ++  L+     L+       +      R+   L
Sbjct: 657 AYQAVQQNPQIPPAFKSQIPQGGLAAQVEAQLQA-TARLLEAAWQGDESAQQALRQNPRL 715

Query: 327 E 327
           +
Sbjct: 716 D 716


>gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
 gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
          Length = 428

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 14/145 (9%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----LITEQHVKDII 210
           E+     Q +I+ EA         GD  +S N L+        D      IT    ++ I
Sbjct: 167 EKGFGNEQVTITDEALLHFSRATNGDLRSSLNGLELAIKSTAPDEKGIITITLDIAEECI 226

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL 260
                      D H   I  +  +     +  A+      + +           +  ++ 
Sbjct: 227 QRKALTHDKDGDAHYDVISALQKSIRGSDVDAAMHYLARLIEAGDLPIISRRLMVIAYED 286

Query: 261 LEKIHIIKECSNISFEKIIQKTEKN 285
           +   +       ++  +  +K    
Sbjct: 287 IGLANPSAASRTVTAVQAAEKLGFP 311


>gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 582

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 36/113 (31%), Gaps = 2/113 (1%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                ++ +A  ++     G    + + + +           T   V+ ++       + 
Sbjct: 204 KEGARLTADALALITRAAEGSVRDAMSLMDQAI--AHGAGETTADEVRAMLGLADRGRVL 261

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
           ++ +  ++G    A+       A      A+L    +    +  I I  + ++
Sbjct: 262 DLFDLVMKGDAAGALAELSGQYADGADPMAILRDLAEITHWISIIKISPDAAD 314


>gi|325847794|ref|ZP_08170016.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480812|gb|EGC83865.1| ATPase, AAA family [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 443

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 21/127 (16%)

Query: 146 NKIHLMDLIEESLLIGQK------SISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
               L  LI+ +L   +        I K+A+  L+    GD  A  N L+ ++ +  ED 
Sbjct: 169 TNEDLHKLIDMALTKDKVLQNKNIKIDKDARNTLVKFSNGDCRALLNALE-IAIFSQEDK 227

Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
                +  Q + + I           D H   I   I +        AI      L S  
Sbjct: 228 EGIIEVDRQSILNSIQKKISIYDRNGDRHYDTISAFIKSMRGSDPDAAIFYLAKMLNSGE 287

Query: 246 PSHALLH 252
               +  
Sbjct: 288 DIKFIAR 294


>gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group]
          Length = 1012

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           + ++I +     + I+ S  +   + +    +KF       C       +++ ++     
Sbjct: 466 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 519

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               + ++A +++ +   G    +   L +LS        I+   V++++       + +
Sbjct: 520 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 576

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           +++  +     N +        + +   AL          L  I         +F +  +
Sbjct: 577 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 627

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           +  +     K   L +     +   +R+ L  +       R     +   +   +L +A
Sbjct: 628 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 679


>gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
 gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
          Length = 599

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 28/224 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151
              +   + + +   + I I+               EK   +  I      Y   ++ + 
Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183

Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
           + IE           +  +EA  ++     G    + +   + +S+C     IT Q V +
Sbjct: 184 NTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
            +         +II+  +  K+   ++L +  L        L+ G     + +       
Sbjct: 242 DLNVLDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR--- 298

Query: 269 ECSNISFEKIIQKTEKNIIPMKRN----ILQESLRIWNKNLVRE 308
           +   +   +  Q+  +      +      L ++L++ N+  +  
Sbjct: 299 DVQTLPLLETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINY 342


>gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis
           IC-167]
 gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 418

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 84/225 (37%), Gaps = 19/225 (8%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFS 81
              +  G        +++    +  +  ++  +  V  A  I++ I      +   SLF 
Sbjct: 44  RAILLSGPPGTGKTTMVHALAYDYGLELYEMNASDVRTASRIRETIGK---ALTQGSLFG 100

Query: 82  KK-KIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
            + K++L + +       ++  +  + +I+ +      I + +N+   +  LR +     
Sbjct: 101 FRGKLVLFDEVDGINVRADQGGIYEIVDIVKE--AKVPIAMTAND-PWDPKLRPL---RD 154

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
             + +   P     +++++       +    ++A +++  +  GD  ++ N+LQ ++   
Sbjct: 155 ICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIAESSMGDMRSAINDLQTVA--- 211

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240
            E   +T + V  +    H   +  +++  ++     +       
Sbjct: 212 -ETGPVTRERVSLLSSRAHQYDMFRMVDMVLKANTVASATGVTRL 255


>gi|302024613|ref|ZP_07249824.1| recombination factor protein RarA [Streptococcus suis 05HAS68]
          Length = 378

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 18/182 (9%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII-------- 210
            +I  EA   L     GD  A+ N L+               I    V++ +        
Sbjct: 124 VTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMD 183

Query: 211 --CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
              D H   +  +  +     +  ++  A   + ++          +  ++ +   +   
Sbjct: 184 KNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEA 243

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK-NLVRETLHKIDHRIHLARKKKYLE 327
           +   ++  +  QK      P  R ++   +               +D  +   RK  +L 
Sbjct: 244 QIHTVTALEAAQKIG---FPEARILIANVVIDLALSPKSNSAYLAMDAALADLRKNGHLP 300

Query: 328 KN 329
             
Sbjct: 301 IP 302


>gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 434

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII------- 210
           L      +  E  + +   + GD   + N L++ ++   +   IT + ++ ++       
Sbjct: 186 LGARNLQVKDELLEDIGIFVNGDGRMALNILEQAAAMVHDGEEITLEILEKVVGRRIYTY 245

Query: 211 ---CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
               D+H   I   I +     +   +      + +    + +  
Sbjct: 246 DKKGDSHYDTISAFIKSMRGSDVQATLHYLARMIEAGEDPNFIAR 290


>gi|239909103|ref|YP_002955845.1| hypothetical protein DMR_44680 [Desulfovibrio magneticus RS-1]
 gi|239798970|dbj|BAH77959.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 331

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 91/325 (28%), Gaps = 33/325 (10%)

Query: 29  SDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILI 88
            D  ++ E + +           PFS  V    E       FW+ +   SLF+ ++ +++
Sbjct: 12  PDPEIVRERVER----QLADSGQPFSREVFWGDEELGAP--FWSALTVGSLFAGRRAVIL 65

Query: 89  ENL-STEKKVLDCLEEIIIKNICNH--IIIIKSN-EIKKNNTLRK---------IAEKFT 135
               +        L   +             +   + K      K         +AEK  
Sbjct: 66  RRAEAAPPDFWPKLTPALKGFNDAVWPFFCFEGPLDKKGGPKFPKTLTEQPYFTVAEKRK 125

Query: 136 SVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC 195
            +         +  +   + +        +     + L A L      + NEL KL    
Sbjct: 126 WIFVSP--GLTRRDMGPRLADWAGRRGLVLEPGVAEALAAALPASLAHADNELAKLELSL 183

Query: 196 LEDILITEQHVKDIICDTHVLYIEEIINATIQGK--IYNAIMLADFFLASKMPSHALLHG 253
            +   +       ++     +     +NA  +G+        + D  LA +      +  
Sbjct: 184 GDRTSLEMAD-LALLSHHEGMDGFAFLNALSEGRDPTKVWQEIFDKELAGEEMIFPFIGL 242

Query: 254 FLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKI 313
            L + +++ ++         +  +         +  ++  +   L       + E     
Sbjct: 243 LLYEARMMWRL---------AVGEADDVRLPPQVRRQKEAMARRLGSAGLTRLFEAAFAA 293

Query: 314 DHRIHLARKKKYLEKNIIFQTILYI 338
           +  I    +K       +   +  +
Sbjct: 294 EAGIKTGARKPDQAMEFLTAELFRL 318


>gi|269126366|ref|YP_003299736.1| AAA ATPase central domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268311324|gb|ACY97698.1| AAA ATPase central domain protein [Thermomonospora curvata DSM
           43183]
          Length = 463

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 55/205 (26%), Gaps = 38/205 (18%)

Query: 147 KIHLMDLIEESLLIGQ-----KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI-- 199
           +  L  +IE +L   +      +++ EA   L+   GGD   +   L+  +         
Sbjct: 186 EQDLRRVIERALTDARGLGGAVALTDEAADHLVRLAGGDARRALTYLEAAALVAGAGRAD 245

Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
                I    ++  +           D H   I   I +     +  A+      L +  
Sbjct: 246 AAKATIDVAVLEKAVDRAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMLEAGE 305

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNII-------PMKRNILQESL 298
               +    +             E   ++    +Q              P  R  L +++
Sbjct: 306 DPRFIARRLIVH---------ASEDVGMADPTALQTAVAAAHAVEFVGLPEARINLAQAV 356

Query: 299 RIWN-KNLVRETLHKIDHRIHLARK 322
                       +  ID  I   RK
Sbjct: 357 IHLALAPKSNAVITAIDQAIGDVRK 381


>gi|152964436|ref|YP_001360220.1| DNA polymerase III, subunits gamma and tau [Kineococcus
           radiotolerans SRS30216]
 gi|151358953|gb|ABS01956.1| DNA polymerase III, subunits gamma and tau [Kineococcus
           radiotolerans SRS30216]
          Length = 712

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L   + E        I K    +++   GG    + + L +L +   ++  +T      +
Sbjct: 184 LTAYLAELAEREGVRIGKGVLPLVVRAGGGSVRDTLSVLDQLIAGAGDEG-VTYDIAVSL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           +  TH   +++++ A   G         +  + +           LQ+ + L
Sbjct: 243 LGYTHASLLDDVVEALAAGDGATVFRAVERVVDTGQEPRRFADDLLQRLRDL 294


>gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis
           W1]
 gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 450

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 69/199 (34%), Gaps = 28/199 (14%)

Query: 21  HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF 80
           +   + YG        L      +  +       +   ++  ++   +       S SLF
Sbjct: 41  NKALLLYGPPGTGKTTLAQALAHDYGLEL---LEMNASDSRNLEAIKNIAQRAAVSGSLF 97

Query: 81  SKK-KIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNE-----IKKNNTLRK 129
             K K+I ++     N   +   +  + E++ K    + +++ +N+     +++   L K
Sbjct: 98  GTKGKLIFLDEVDGINARQDMGAIPAIAELVQK--TRYPVLLAANDPWDPSLRELRNLAK 155

Query: 130 IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQ 189
           + E       +  Y      L  ++ +     +     +A   ++    GD   +R  + 
Sbjct: 156 LVEVKK----LGKYA-----LRKILGKICTSEKLQCDDDALDEIIEISDGD---ARYAIN 203

Query: 190 KLSSYCLEDILITEQHVKD 208
            L +       +T + VK+
Sbjct: 204 LLEATAEGFKKVTVESVKE 222


>gi|332665533|ref|YP_004448321.1| DNA polymerase III subunits gamma and tau [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334347|gb|AEE51448.1| DNA polymerase III, subunits gamma and tau [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 589

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 73/217 (33%), Gaps = 24/217 (11%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENL-STEKKVLDCLEEIIIKNI 109
           F++  L+A      ++I     ++       K K+ +I+ +    ++  +   + + +  
Sbjct: 90  FNISELDAASNNSVEHIRALIEQVRFQPQQGKYKVFIIDEVHMLSQQAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI--SCYPDNKIHLMD--LIEE---SLLIGQ 162
              I I+               EK   +  I   C   +   +    ++           
Sbjct: 150 SYAIFIL------------ATTEKHKIIPTILSRCQIFDFKRIQAPAMVRHLQGISTKEN 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            + ++EA  ++     G    + +   ++ SY      I  + V   +      Y  +I+
Sbjct: 198 ITANEEALHVIAQKADGALRDALSIFDRIVSYSG--SHINYEDVILNLNVLDYDYYFKIV 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           +A +   +   ++L D  L     S   ++G  +  +
Sbjct: 256 DALLVEDLAQVMLLFDEILNKGFESDIFINGLAEHLR 292


>gi|213966130|ref|ZP_03394317.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
 gi|213951228|gb|EEB62623.1| recombination factor protein RarA [Corynebacterium amycolatum SK46]
          Length = 488

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 148 IHLMDLIEESLLIGQ-----KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
             +  LI+ +L   +      S++ +A++ L+A   GD   S   L+  +    +   IT
Sbjct: 217 GAVGTLIDRALTDERGLNGRVSMTDDARKQLIALAAGDARRSLTYLEAAAEAVADGEQIT 276

Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            + + + I           D H       I +     +  A+      +        +  
Sbjct: 277 AESLANSINRAVVRYDRDGDQHYDVTSAFIKSVRGSDVDAALHYLARMIEGGEDPRFIAR 336


>gi|88856257|ref|ZP_01130917.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
 gi|88814576|gb|EAR24438.1| ATPase related to the helicase subunit [marine actinobacterium
           PHSC20C1]
          Length = 472

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 18/126 (14%)

Query: 145 DNKIHLM--DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE----- 197
           D    L+   + +   L     +  EA+ +L+    GD   +   L+  +          
Sbjct: 200 DEVGELVDRAVTDARGLKNAVVLEPEARALLVRLSSGDARRALTALEASAVSAANHSDAQ 259

Query: 198 -DILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
              ++T +HV   +           D H   I   I +     +  AI      + +   
Sbjct: 260 SPAVVTAEHVASAVDRALLRYDRQGDEHYDVISAFIKSVRGSDVDAAIHYLARMIEAGED 319

Query: 247 SHALLH 252
              +  
Sbjct: 320 PRFIAR 325


>gi|163842310|ref|YP_001626714.1| DNA polymerase III subunits gamma and tau [Brucella suis ATCC
           23445]
 gi|163673033|gb|ABY37144.1| DNA polymerase III, subunits gamma and tau [Brucella suis ATCC
           23445]
          Length = 602

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|330821263|ref|YP_004350125.1| Glycosyl transferase, group 1 [Burkholderia gladioli BSR3]
 gi|327373258|gb|AEA64613.1| Glycosyl transferase, group 1 [Burkholderia gladioli BSR3]
          Length = 409

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 71/241 (29%), Gaps = 26/241 (10%)

Query: 68  STFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK---- 123
               +EI    +   +  ++   +  +       +        +  +++   +++     
Sbjct: 158 GKVADEIRRLGIDGNRIGVIYNGVDAQAFGGAQPDRGAYALPQDAFLLLFVGDLRTPRKN 217

Query: 124 -NNTLRKIAEKFTSV-LAIS------CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLA 175
               L+ + E    V LA++       YP+    L   I   +         +    L++
Sbjct: 218 LGTVLKALTELPEHVHLAVAGYLPGSPYPEEARALG--IASRVHFLGLV---KTMPQLMS 272

Query: 176 NLGGDRIASRNE---LQKLSSYCLEDILITEQHV--KDIICDTHVLYIEEIINA-TIQGK 229
           ++      SR E   L  L +      ++T +     +II     + +++  +A  + G 
Sbjct: 273 SVDAYVFPSRYEAMSLSLLEAMAAGLPVVTARTAGGAEIITADCGIVLDDPDDANALAGA 332

Query: 230 IYNAIMLADFFLASKMPSHALLHGF---LQKFQLLEKIHIIKECSNISFEKIIQKTEKNI 286
           I +     +        + AL++ F       Q L     +                   
Sbjct: 333 IGSLAHSRERCREMGRAARALMNDFGWNQMGAQYLALYRRLISQPQPISSGTQAVNPPPA 392

Query: 287 I 287
            
Sbjct: 393 H 393


>gi|218189003|gb|EEC71430.1| hypothetical protein OsI_03625 [Oryza sativa Indica Group]
          Length = 815

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 64/191 (33%), Gaps = 19/191 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ ++         + ++A +++ +   G    +   L +LS        I+   V++
Sbjct: 293 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 349

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  +     N +        + +   AL          L  I    
Sbjct: 350 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLAL-------MSQLATIITDI 402

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
              + +F +  ++  +     KR  L +     +   +R+ L  +       R     + 
Sbjct: 403 LAGSYTFTR--ERLRRKFF--KRPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KT 453

Query: 329 NIIFQTILYIA 339
             +   +L +A
Sbjct: 454 TWLTAALLQLA 464


>gi|157363863|ref|YP_001470630.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
 gi|157314467|gb|ABV33566.1| DNA polymerase III, subunits gamma and tau [Thermotoga lettingae
           TMO]
          Length = 465

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 59  NALEIQKNISTFWNEINST-------SLFSKKKIILIENL-STEKKVLDCLEEIIIKNIC 110
           + +E+    +   +EI           + S  KI +I+      ++  + L + + +   
Sbjct: 87  DVIELDAASNRGIDEIRKIRDAVGFKPMLSSHKIYIIDEFHMLTREAFNALLKTLEEPPE 146

Query: 111 NHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIH-----LMDLIEESLLIGQKSI 165
             + ++ +  +          E+    +   C      +     +++ I +        +
Sbjct: 147 KVLFVLATTNL----------ERVPQTIISRCQVIEFRNFSEDAILENIRKVAHFESIEL 196

Query: 166 SKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225
            ++A +++     G    + + L+++++Y  +  +IT Q V+  +       ++  I A 
Sbjct: 197 HEDAARMIARRASGGMRDALSYLEQIANYA-DGQVITPQVVEKALGLVPDEIVQRYIKAI 255

Query: 226 IQGKIYNAIMLADFFLASKMPSHALLH 252
             G +     L D    S +    LL 
Sbjct: 256 RNGLVKEVGELVDEVHRSGLDVDQLLQ 282


>gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus]
          Length = 425

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 24/201 (11%)

Query: 143 YPDNKIHLMDLIEESLLIGQKSI-------SKEAKQILLANLGGDRIASRNELQKLSS-- 193
           YP ++  +   +  +L   ++ +        ++A         GD  ++ N L+      
Sbjct: 149 YPLDENDIKVSLNRALNDEERGLASYNPIVDEDAMSYFTTQSQGDVRSALNALELAVLSS 208

Query: 194 -YCLEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
                   IT Q  KD +           D H   +     +     +  A+      + 
Sbjct: 209 DTTDSQRYITLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIE 268

Query: 243 SKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES-LRIW 301
           +      +    +  +   E I +    +       I+  E+   P  R  L ++ + + 
Sbjct: 269 AGDLPTIVRRLLVISY---EDIGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELC 325

Query: 302 NKNLVRETLHKIDHRIHLARK 322
                   +  ID  +   RK
Sbjct: 326 LSPKSNSGISAIDAALSDIRK 346


>gi|15790579|ref|NP_280403.1| replication factor C large subunit [Halobacterium sp. NRC-1]
 gi|10581095|gb|AAG19883.1| replication factor C large subunit [Halobacterium sp. NRC-1]
          Length = 501

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 83  KKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTS 136
           +K++L++         ++     +  ++        I++ +NE  + +++LR        
Sbjct: 129 RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQ--PIVLVANEYYEMSSSLRSAC----- 181

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I     +K  ++ ++ +       +  ++A   +     GD  ++ N+LQ L     
Sbjct: 182 -REIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQAL---AE 237

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +D  +T   V     D      + + +         A+  A
Sbjct: 238 QDRTLTADDVVMGERDRTEGVFDYLDDVIATHSAREALQAA 278


>gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
 gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
          Length = 500

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 14/117 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL----EDILITEQHVKDII 210
           E  L   +  +  EA   L+   GGD  ++ N L+               IT    ++ I
Sbjct: 200 ERGLGNYRVEVEPEALDHLVRVAGGDARSALNALELAVLTTPPGEDGVRRITLAVAEESI 259

Query: 211 ----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
                      D H  ++  +I +        A+      L +     A+    L  
Sbjct: 260 QKRALAYDPTGDEHYDHLSALIKSIRGSDPDAAVYWLARMLYAGEDPRAIARRLLVH 316


>gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group]
          Length = 1050

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 64/191 (33%), Gaps = 19/191 (9%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +++ ++         + ++A +++ +   G    +   L +LS        I+   V++
Sbjct: 527 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISLSLVQE 583

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
           ++       + ++++  +     N +        + +   AL          L  I    
Sbjct: 584 LVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLAL-------MSQLATIITDI 636

Query: 269 ECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEK 328
              + +F +  ++  +     KR  L +     +   +R+ L  +       R     + 
Sbjct: 637 LAGSYTFTR--ERLRRKFF--KRPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KT 687

Query: 329 NIIFQTILYIA 339
             +   +L +A
Sbjct: 688 TWLTAALLQLA 698


>gi|23500949|ref|NP_697076.1| DNA polymerase III subunits gamma and tau [Brucella suis 1330]
 gi|23346805|gb|AAN28991.1| DNA polymerase III, gamma and tau subunits [Brucella suis 1330]
          Length = 602

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|254694837|ref|ZP_05156665.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 3
           str. Tulya]
 gi|261215165|ref|ZP_05929446.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916772|gb|EEX83633.1| DNA polymerase III gamma and tau [Brucella abortus bv. 3 str.
           Tulya]
          Length = 602

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|17988191|ref|NP_540825.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
           1 str. 16M]
 gi|225851577|ref|YP_002731810.1| DNA polymerase III subunits gamma and tau [Brucella melitensis ATCC
           23457]
 gi|256045825|ref|ZP_05448701.1| DNA polymerase III subunits gamma and tau [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256264911|ref|ZP_05467443.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
           str. 63/9]
 gi|260563116|ref|ZP_05833602.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|265992238|ref|ZP_06104795.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983953|gb|AAL53089.1| DNA polymerase iii subunits gamma and tau [Brucella melitensis bv.
           1 str. 16M]
 gi|225639942|gb|ACN99855.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
           ATCC 23457]
 gi|260153132|gb|EEW88224.1| DNA polymerase III gamma and tau subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|263003304|gb|EEZ15597.1| DNA polymerase III gamma and tau [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095396|gb|EEZ18997.1| DNA polymerase III subunit gamma and tau [Brucella melitensis bv. 2
           str. 63/9]
 gi|326408046|gb|ADZ65111.1| DNA polymerase III subunits gamma and tau [Brucella melitensis M28]
 gi|326537763|gb|ADZ85978.1| DNA polymerase III, subunits gamma and tau [Brucella melitensis
           M5-90]
          Length = 602

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|86261629|emb|CAI47642.1| putative phosphorylase or hydrolase [Streptoalloteichus
           hindustanus]
          Length = 780

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 44/176 (25%), Gaps = 12/176 (6%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           I E L +   S   EA+ +    +         E  + +     +I +    V     D 
Sbjct: 215 ITERLAVLAASAEPEARDVCFGRVR------HAEALRFAGGAGREIRVDTVAVISTNFDD 268

Query: 214 HVLYIEEIINATIQGKIYNAIML------ADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
             + ++  ++A     +  A                +     +      +F L   I   
Sbjct: 269 DAVSVDPDVDAVPDIDLVVAEHERIWAERWRRHAEVEGDPAIVQGMRYSQFHLFGSIDRG 328

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           +   N+    +  +                   W      + + +       A ++
Sbjct: 329 RTVHNVPARGLSSEYHSGHFFYNTEFFALPHAAWTDPAAAKAMLRFRVATLDAARE 384


>gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC
           33707]
 gi|325553081|gb|EGD22761.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC
           33707]
          Length = 398

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            L+E+        +      +++   GG    S + L +L +   E+  +T      ++ 
Sbjct: 170 GLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG-VTYARALALLG 228

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T V  I+E ++A             D  + +           L++ + L  +  + + +
Sbjct: 229 VTDVALIDEAVDALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPDAA 288

Query: 272 NI----SFEKIIQKTE 283
                 +   ++ +  
Sbjct: 289 ERGLVDAPGDVLDRMR 304


>gi|312137857|ref|YP_004005193.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S]
 gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S]
          Length = 723

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            L+E+        +      +++   GG    S + L +L +   E+  +T      ++ 
Sbjct: 184 GLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEG-VTYARALALLG 242

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T V  I+E ++A             D  + +           L++ + L  +  + + +
Sbjct: 243 VTDVALIDEAVDALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPDAA 302

Query: 272 NI----SFEKIIQKTE 283
                 +   ++ +  
Sbjct: 303 ERGLVDAPGDVLDRMR 318


>gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16]
 gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16]
          Length = 420

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 24/206 (11%)

Query: 144 PDN-KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL--- 196
           PD+ +  L   + +    L   +  I+ EA + L    GGD  A+ N L+          
Sbjct: 153 PDDIEKALRRALADEERGLGHEKIDIAPEALRHLALACGGDVRAALNALELAVLSTPKQP 212

Query: 197 -EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
                +T +  +  I           D H   +     +     +  ++      L +  
Sbjct: 213 DGTRSVTLRSAEQSIQKKSIQHDKDGDAHYDVLSAFQKSIRGSDVNASLHYLARLLEAGD 272

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN--IIPMKRNILQESLRIWNK 303
                    +  ++ +   +       ++  +  ++       IP+   +++ +L     
Sbjct: 273 LISIHRRLLVIAYEDISLANPQAGPRTLAAIEASERLGLPEARIPLANAVVELALS---- 328

Query: 304 NLVRETLHKIDHRIHLARKKKYLEKN 329
                    +D  I   RK    E  
Sbjct: 329 PKSNSAYKALDAAIDALRKGGSGEVP 354


>gi|330858491|ref|YP_004414866.1| putative tail fiber protein [Shigella phage Shfl1]
 gi|327397425|gb|AEA72928.1| putative tail fiber protein [Shigella phage Shfl1]
          Length = 1149

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180
           +KK N  RK AE   S+  I+   D     +  IE+        IS  +   L   +  +
Sbjct: 874 MKKENGKRK-AEYTKSLKLIA---DETQARVTSIEQLKASFDDQISA-SNSELREVIATE 928

Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE-EIINATIQGKIYNAIMLADF 239
             A   E+ +L +   +DI  +   +++ I +      + ++  +   G    A+     
Sbjct: 929 TGALSREIDQLKAEIGDDIQASLTDIREAIANETEARTQADLSLSARLGNNEAALSQKLD 988

Query: 240 FLASKMPSHAL 250
             ++   + A+
Sbjct: 989 SWSNADSTGAM 999


>gi|62289022|ref|YP_220815.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 1
           str. 9-941]
 gi|82698960|ref|YP_413534.1| DNA polymerase III subunits gamma and tau [Brucella melitensis
           biovar Abortus 2308]
 gi|161618024|ref|YP_001591911.1| DNA polymerase III subunits gamma and tau [Brucella canis ATCC
           23365]
 gi|189023298|ref|YP_001934066.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
 gi|237814509|ref|ZP_04593507.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
           2308 A]
 gi|254690348|ref|ZP_05153602.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 6
           str. 870]
 gi|254696466|ref|ZP_05158294.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700849|ref|ZP_05162677.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 5 str.
           513]
 gi|254705216|ref|ZP_05167044.1| DNA polymerase III subunits gamma and tau [Brucella suis bv. 3 str.
           686]
 gi|254709194|ref|ZP_05171005.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           B2/94]
 gi|254731378|ref|ZP_05189956.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 4
           str. 292]
 gi|256030718|ref|ZP_05444332.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           M292/94/1]
 gi|256060177|ref|ZP_05450357.1| DNA polymerase III subunits gamma and tau [Brucella neotomae 5K33]
 gi|256158724|ref|ZP_05456599.1| DNA polymerase III subunits gamma and tau [Brucella ceti M490/95/1]
 gi|256254122|ref|ZP_05459658.1| DNA polymerase III subunits gamma and tau [Brucella ceti B1/94]
 gi|256258602|ref|ZP_05464138.1| DNA polymerase III subunits gamma and tau [Brucella abortus bv. 9
           str. C68]
 gi|256368500|ref|YP_003106006.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
           4915]
 gi|260546316|ref|ZP_05822056.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
           8038]
 gi|260567317|ref|ZP_05837787.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
 gi|260755890|ref|ZP_05868238.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
 gi|260759114|ref|ZP_05871462.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
 gi|260760839|ref|ZP_05873182.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884914|ref|ZP_05896528.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
 gi|261221264|ref|ZP_05935545.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
 gi|261316694|ref|ZP_05955891.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
 gi|261324154|ref|ZP_05963351.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
 gi|261751359|ref|ZP_05995068.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
 gi|261755924|ref|ZP_05999633.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
 gi|265987764|ref|ZP_06100321.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
 gi|265997225|ref|ZP_06109782.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
 gi|297247441|ref|ZP_06931159.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
           B3196]
 gi|62195154|gb|AAX73454.1| DnaX, DNA polymerase III, gamma and tau subunits [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615061|emb|CAJ09987.1| Replication factor C conserved domain:ATP/GTP-binding site motif A
           (P-loop):AAA ATPase:AAA ATPase, central region [Brucella
           melitensis biovar Abortus 2308]
 gi|161334835|gb|ABX61140.1| DNA polymerase III, subunits gamma and tau [Brucella canis ATCC
           23365]
 gi|189018870|gb|ACD71592.1| DNA polymerase III subunits gamma and tau [Brucella abortus S19]
 gi|237789346|gb|EEP63556.1| DNA polymerase III, subunits gamma and tau [Brucella abortus str.
           2308 A]
 gi|255998658|gb|ACU47057.1| DNA polymerase III subunits gamma and tau [Brucella microti CCM
           4915]
 gi|260096423|gb|EEW80299.1| DNA polymerase III gamma and tau subunit [Brucella abortus NCTC
           8038]
 gi|260156835|gb|EEW91915.1| DNA polymerase III gamma and tau [Brucella suis bv. 4 str. 40]
 gi|260669432|gb|EEX56372.1| DNA polymerase III gamma and tau [Brucella abortus bv. 4 str. 292]
 gi|260671271|gb|EEX58092.1| DNA polymerase III gamma and tau [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675998|gb|EEX62819.1| DNA polymerase III gamma and tau [Brucella abortus bv. 6 str. 870]
 gi|260874442|gb|EEX81511.1| DNA polymerase III gamma and tau [Brucella abortus bv. 9 str. C68]
 gi|260919848|gb|EEX86501.1| DNA polymerase III gamma and tau [Brucella ceti B1/94]
 gi|261295917|gb|EEX99413.1| DNA polymerase III gamma and tau [Brucella pinnipedialis B2/94]
 gi|261300134|gb|EEY03631.1| DNA polymerase III gamma and tau [Brucella neotomae 5K33]
 gi|261741112|gb|EEY29038.1| DNA polymerase III gamma and tau [Brucella suis bv. 5 str. 513]
 gi|261745677|gb|EEY33603.1| DNA polymerase III gamma and tau [Brucella suis bv. 3 str. 686]
 gi|262551693|gb|EEZ07683.1| DNA polymerase III gamma and tau [Brucella ceti M490/95/1]
 gi|264659961|gb|EEZ30222.1| DNA polymerase III gamma and tau [Brucella pinnipedialis M292/94/1]
 gi|297174610|gb|EFH33957.1| DNA polymerase III subunit gamma/tau [Brucella abortus bv. 5 str.
           B3196]
          Length = 602

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|254389993|ref|ZP_05005215.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703702|gb|EDY49514.1| truncated DNA polymerase III subunits gamma and tau [Streptomyces
           clavuligerus ATCC 27064]
          Length = 331

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 17/158 (10%)

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D  +T      ++  T    ++ +++A   G    A  + D  +         +   L++
Sbjct: 141 DEGVTYAMATALLGYTDGSLLDSVVDAFATGDGAAAFEVVDRVIEGGNDPRRFVTDLLER 200

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE---SLRIWNKNLVRETLHKID 314
            + L  +             +    EK +I    ++++        +    +      ++
Sbjct: 201 LRDLVIL-----------AAVPDAAEKGLIDAPVDVVERMQAQASAFGAAELSRAADLVN 249

Query: 315 HRIHLAR--KKKYLE-KNIIFQTILYIAQTACKNNNFY 349
             +   R      L+ + I  + +L  A    ++    
Sbjct: 250 AGLTEMRGATSPRLQLELICARVLLPAAFGDERSLQAR 287


>gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464]
          Length = 391

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L  ++L + +K I   AK  LL N  GD   +R  L  L      +  IT + 
Sbjct: 150 NKSDLDKLCAKALTLLKKQIEPSAKTYLLNNSAGD---ARALLNLLDLSAKIEDPITLET 206

Query: 206 VKDIICDTHVLY----------IEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           ++ +   +                 +I +        +I      +A       +    
Sbjct: 207 LQSLRSHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265


>gi|163754680|ref|ZP_02161802.1| single-strand DNA specific exonuclease [Kordia algicida OT-1]
 gi|161325621|gb|EDP96948.1| single-strand DNA specific exonuclease [Kordia algicida OT-1]
          Length = 562

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 32  GLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENL 91
           G+ F+LI         T  D F  + L A  I  +I     E  + + F   K+I     
Sbjct: 197 GVGFKLIQALASKRGKTVTDLFPYLDLVATAIAADIVPLTGENRTLAYFG-MKVINKSPR 255

Query: 92  STEKKVLDCLEEIIIKNICNHIIII-----KSNEIKKN-NTLRKIAE-----KFTSVLAI 140
           +  K ++  L++     I + + ++      +  I +  + +  + E           +I
Sbjct: 256 AGIKAIISQLKKK-EFTITDVVFVVAPRINAAGRISQGLHAVELLTENNLEVAKQYAASI 314

Query: 141 SCYPDNKIHLMDLIEESLLI 160
             Y   +  L   I +    
Sbjct: 315 EKYNSERRTLDQEITKEAFQ 334


>gi|124005566|ref|ZP_01690406.1| LAO/AO transport system ATPase [Microscilla marina ATCC 23134]
 gi|123989000|gb|EAY28593.1| LAO/AO transport system ATPase [Microscilla marina ATCC 23134]
          Length = 331

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
            +   +E  L   +  +S +A  ++ + L  DR  +R  +++L  Y  + + I    V
Sbjct: 10  DISQYVEGILQQDRVRLS-QAITLVESTLEEDRSLARQLIERLLPYTGKAVRIGITGV 66


>gi|294851443|ref|ZP_06792116.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
 gi|294820032|gb|EFG37031.1| DNA polymerase III subunit gamma/tau [Brucella sp. NVSL 07-0026]
          Length = 602

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
 gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008]
 gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
          Length = 433

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 13/119 (10%)

Query: 147 KIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITE 203
              L   I +    L      ++ E  + +   + GD   + N L++ ++   ++  IT 
Sbjct: 172 GQILRRAITDEAVGLGKRHLQVTDEVLEDVGIFVNGDGRMALNILEQAAAMVPDEGTITI 231

Query: 204 QHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
           + ++ ++           D+H   I   I +     +   +      + +    + +  
Sbjct: 232 EVLEKVVGRRIYTYDKKGDSHYDTISAFIKSMRGSDVQATVHYLARMIEAGEDPNFIAR 290


>gi|284989074|ref|YP_003407628.1| DNA polymerase III subunits gamma and tau [Geodermatophilus
           obscurus DSM 43160]
 gi|284062319|gb|ADB73257.1| DNA polymerase III, subunits gamma and tau [Geodermatophilus
           obscurus DSM 43160]
          Length = 765

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            L  L+E++       +      +++   GG    S + L +L +   E+  +T +    
Sbjct: 183 TLRGLLEKTCAAEGVQVEPTVFPLVVRAGGGSVRDSLSILDQLLAGAGEEG-VTYKSAVG 241

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
           ++  T    ++E I+A             D  + +    
Sbjct: 242 LLGVTDDALLDETIDALAAHDAPGVFRAVDRVVEAGHDP 280


>gi|311233409|gb|ADP86263.1| DNA polymerase III delta [Desulfovibrio vulgaris RCH1]
          Length = 329

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 34/223 (15%)

Query: 64  QKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNH--IIIIKSNE 120
           +     FW  +    LF   + +++ N       V   L   + +          ++   
Sbjct: 44  EALPPVFWEHLTLQGLFGSPRALVVRNAHNLPADVWKRLSTALARPNPLSWPFFCLEVP- 102

Query: 121 IKKNNTLRKIAEKF-----TSVLAISC--YPD-----------NKIHLMDLIEESLLIGQ 162
                      E+        +  + C  + +           ++  +   +++      
Sbjct: 103 ----------FERGQPKIPAHIAKLRCLDFAERKGWVWRSPGLDERGIRRFLQQRATDAG 152

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
              +  A   + A +  D  A+  EL KL      D  +  + +  ++     L I   I
Sbjct: 153 ARFAPGALDAIAAAMPADATAAATELDKLLLAAGLDATLGPE-LAKLVSHEPDLDIFAFI 211

Query: 223 NATIQGKIYNAIMLADFFLASKMP-SHALLHGFLQKFQLLEKI 264
            A   G                       +   L++ + L ++
Sbjct: 212 KALQGGNAQAVWRQVQRDKLGGDSMVFPFIGMLLRETRQLWQL 254


>gi|254707264|ref|ZP_05169092.1| DNA polymerase III subunits gamma and tau [Brucella pinnipedialis
           M163/99/10]
 gi|261314747|ref|ZP_05953944.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
           M163/99/10]
 gi|261303773|gb|EEY07270.1| DNA polymerase III gamma and tau [Brucella pinnipedialis
           M163/99/10]
          Length = 602

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 441

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 37/257 (14%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        + +        T    F  +      +  +I     E       + +
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139
           K IL  +       L   + ++       II+I +             E   ++++    
Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162

Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +P  +  ++ +IE +       L      I  +AK+++    GGD   + N L+ + 
Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEDDAKKLIAKLSGGDARVALNILEAVV 222

Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238
                      Y  ++ +I   + K  + D         I   I +        A+    
Sbjct: 223 YSSQAQDDGKIYISQESVINLSNRKTALYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282

Query: 239 FFLASKMPSHALLHGFL 255
             L S      +    +
Sbjct: 283 KMLDSGEDIKFIARRLI 299


>gi|255323655|ref|ZP_05364785.1| ATPase, AAA family [Campylobacter showae RM3277]
 gi|255299369|gb|EET78656.1| ATPase, AAA family [Campylobacter showae RM3277]
          Length = 394

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 80/263 (30%), Gaps = 33/263 (12%)

Query: 3   TIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE 62
             E     +K  +N  + H +F  YG              +++   ++  F    L   E
Sbjct: 19  QRELVGVFKKFIENKKIPHSIF--YGPAGCGKTSFARVVARSMEYDFY-EFDGGNLKIEE 75

Query: 63  IQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDC---LEEIIIKNICNHIIIIKSN 119
            +K I        S  LF   +I  +     E  ++        II  +  N  I + S 
Sbjct: 76  FRK-ILKNHENALSKPLFFIDEIHRLSKTQQEALLIPMENYRAAIIGASTENPYITLSSG 134

Query: 120 EIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGG 179
            I+  + L    E                    L+E      +  IS EAK  L+ + GG
Sbjct: 135 -IRSRSML---FEFKPLA---------SEDFEKLLERVRDEVKFDISDEAKAYLVKSSGG 181

Query: 180 DRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE----------IINATIQGK 229
           D   +R  L  L      D  IT +++K +  +     + +           I +     
Sbjct: 182 D---ARGLLNLLEFAVSLDEKITLENLKTLRANAVSEGVSDDDVHYGLASAFIKSLRGSD 238

Query: 230 IYNAIMLADFFLASKMPSHALLH 252
               +      + +   +  +  
Sbjct: 239 ENAVMYYLARLIDAGESADFIAR 261


>gi|254718255|ref|ZP_05180066.1| DNA polymerase III subunits gamma and tau [Brucella sp. 83/13]
 gi|265983215|ref|ZP_06095950.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
 gi|306839997|ref|ZP_07472791.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
 gi|264661807|gb|EEZ32068.1| DNA polymerase III gamma and tau [Brucella sp. 83/13]
 gi|306404961|gb|EFM61246.1| DNA polymerase III, subunits gamma and tau [Brucella sp. NF 2653]
          Length = 602

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIKVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|227494434|ref|ZP_03924750.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226832168|gb|EEH64551.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 768

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 14/176 (7%)

Query: 173 LLANLGGDRIASRNELQKL-SSYCL-EDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230
           L+   GG   + R+ L  L       E+ +I+ +    ++  T    ++ I+     G  
Sbjct: 184 LVVRAGG--GSVRDSLSVLDQLMAGAENGVISYERAIALLGYTDGTLLDGIVTNLHAGDG 241

Query: 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMK 290
                  +  + S       +  FLQ+ + L  I +  E +            + I   +
Sbjct: 242 SAVFDALERMVDSGHDPRRFIEDFLQRLRDLLVISLAPEGAR--------TLLQGIPVEQ 293

Query: 291 RNILQESLRIWNKNLVRETLHKIDHRIHL--ARKKKYLEKNIIFQTILYIAQTACK 344
              + +  + W    + +     D  +          L+  ++   IL   Q A K
Sbjct: 294 SERMYQQAQQWGATKLSKAADLTDEALRSMVGATSPKLQVELLIGRILVEIQGAAK 349


>gi|289706015|ref|ZP_06502388.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58]
 gi|289557217|gb|EFD50535.1| DNA polymerase III, subunit gamma and tau [Micrococcus luteus SK58]
          Length = 1152

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+  +E+       S+ K    +++    G    + + L +L +   ++  ++ +    +
Sbjct: 184 LIAYLEQLCAEEGVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
              T    ++++I+A           + D  + S       +   L +F+ L     + E
Sbjct: 243 PGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302

Query: 270 CSN 272
            + 
Sbjct: 303 EAG 305


>gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
 gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
          Length = 450

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 72/257 (28%), Gaps = 33/257 (12%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        L     +         F  +      + K          + SL   K
Sbjct: 57  LILYGPPGCGKTSLAQVIARKTEGK----FIRINAVTSGVSKIREVIDKASKNRSLHGIK 112

Query: 84  KIILIE-----NLSTEKKVLDCLE----EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKF 134
            I+ I+     N S +  +L  +E     +I     N    + S  + ++  +R    K 
Sbjct: 113 TILFIDEIHRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKK 172

Query: 135 TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194
             ++ I     N        E  L      IS++A Q L +  GGD   + N L+     
Sbjct: 173 EDIIKILKNALNNE------ERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLT 226

Query: 195 CLEDILITEQHVKDII--------------CDTHVLYIEEIINATIQGKIYNAIMLADFF 240
              D        K+II               D H   +   I +        A+      
Sbjct: 227 TPPDKEGIIHINKNIISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARM 286

Query: 241 LASKMPSHALLHGFLQK 257
           L S      +    +  
Sbjct: 287 LESGEDPRFIARRIIVH 303


>gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 461

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%)

Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199
            +   I+ +L   +         ++ EA+  L     GD  A+ N  EL  LS+    D 
Sbjct: 184 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 243

Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244
            I               I  DT+     +II+A         +  A+      +A  
Sbjct: 244 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 300


>gi|239916820|ref|YP_002956378.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
 gi|239838027|gb|ACS29824.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
          Length = 1159

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+  +E+       S+ K    +++    G    + + L +L +   ++  ++ +    +
Sbjct: 184 LIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++++I+A           + D  + S       +   L +F+ L     + E
Sbjct: 243 LGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302

Query: 270 CSN 272
            + 
Sbjct: 303 EAG 305


>gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
           EE-36]
 gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
           EE-36]
          Length = 582

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ L+ +        I+++A  ++     G    + + L +           T   
Sbjct: 188 EPEVMIALMRKIATAEGAEIAEDALALITRAAEGSARDATSLLDQAI--SHGAGETTAVQ 245

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           V+ ++       + ++ +  ++G    A+       +      A+L   
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDL 294


>gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori
           SouthAfrica7]
          Length = 391

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 13/119 (10%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
           NK  L  L  ++L + +K I   AK  LL N  GD  A    L  L      +  IT + 
Sbjct: 150 NKSDLDRLCAKALALLKKQIEPNAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKT 206

Query: 206 VKDI---------ICDTHVLYIEEIINATIQG-KIYNAIMLADFFLASKMPSHALLHGF 254
           +K +           D     +   +  +++G     ++      +A       +    
Sbjct: 207 IKSLRPHSLNDGSYNDDTHYNLTSALIKSLRGSDENASLYYLARLIAGGENPEFIARRL 265


>gi|213966429|ref|ZP_03394606.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
           SK46]
 gi|213950922|gb|EEB62327.1| DNA polymerase III subunit gamma/tau [Corynebacterium amycolatum
           SK46]
          Length = 944

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 10/175 (5%)

Query: 95  KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMD 152
               + L +I+ +    H+I I +    +    T+R     +   L           +  
Sbjct: 139 ASGFNALLKIVEEPPE-HLIFIFATTEPERVLPTIRSRTHHYPFRLLTPP------DMRG 191

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
           L+E  +      +  +   +++   GG    S + + +L +    D  +  +    I+  
Sbjct: 192 LLERVVTAEGVRVEPDVYPLVIQAGGGSPRDSLSVMDQLIAGSGTDG-VDYETSAAILGV 250

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           T  + I + I A   G       +    + S           L + + L  +  +
Sbjct: 251 TDSVIITDAIEALAAGDRAAMFSVVGRVIMSGQDPARFASDLLGRVRDLLVLSAV 305


>gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 648

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQ 204
           D    + + I++ +         EA+Q+L  N        R  L++L++  LE   +  +
Sbjct: 549 DYSETIANQIDDEVRRFILDAHAEARQLLTDN--------REILERLATALLERETLDAE 600

Query: 205 HVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            V  I+    +   + ++  +   +   A            P  A
Sbjct: 601 EVDAIVGGRELPQRQRVVIPSYSDRDRAAKEKRRAASIFGTPKPA 645


>gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302]
 gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302]
          Length = 599

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 28/224 (12%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLM 151
              +   + + +   + I I+               EK   +  I      Y   ++ + 
Sbjct: 136 AAFNAFLKTLEEPPAHVIFIL------------ATTEKHKILPTILSRCQIYDFERMTVG 183

Query: 152 DLIEE---SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
           + IE           +  +EA  ++     G    + +   + +S+C     IT Q V +
Sbjct: 184 NTIEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFC--QGNITYQKVIE 241

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIK 268
            +         +II+  +  K+   ++L +  L        L+ G     + +       
Sbjct: 242 DLNVLDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMAR--- 298

Query: 269 ECSNISFEKIIQKTEKNIIPMKRN----ILQESLRIWNKNLVRE 308
           +   +   +  Q+  +      +      L ++L++ N+  +  
Sbjct: 299 DVQTLPLLETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINY 342


>gi|253580934|ref|ZP_04858196.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847776|gb|EES75744.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 820

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%)

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLAR 321
           E + I+ +   + +++  + T K++      I+ E+L  W   L    L ++   I    
Sbjct: 330 ELMRILMDEEGLGWDEAWEVTRKSVAYTNHTIMSEALEKWPIELFSRLLPRVYQIIEEIN 389

Query: 322 KKKYLE 327
           ++  LE
Sbjct: 390 RRFILE 395


>gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
           11548]
          Length = 421

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 121/350 (34%), Gaps = 38/350 (10%)

Query: 8   KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI 67
           ++ ++  K +  +    + +G        L++   K I     +  +  V     I++ +
Sbjct: 44  RWAKRRDKEIKEAR-AVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVV 102

Query: 68  STFWNEINSTSLFS-KKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI 121
                E    SLF    KI+L + +       +   L+ +  +I        I++ +N  
Sbjct: 103 GRGLREA---SLFGYAGKIVLFDEVDGLHVKEDLGGLEAILNLIET--AKVPIVLTANN- 156

Query: 122 KKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR 181
             +  LR + +     L +     ++  ++++++           +EA + L  +  GD 
Sbjct: 157 PFDPKLRPLRDIS---LVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKSSYGD- 212

Query: 182 IASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL 241
              R  +  L  Y     ++T   +K        L + EI++     ++Y A    +   
Sbjct: 213 --LRAAINDLQLYLAGRKVLTVDDIKRAGERNPQLSMFEILD-----RVYKARWFDEARA 265

Query: 242 ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
            S  PS      F+   + +  ++   E  + +F+++ +      I  +        + W
Sbjct: 266 VSFNPSFDWEQYFVWALETIPIVYKDLEVMSEAFDRLSKADMFIGIVKRT-------QEW 318

Query: 302 NKNLVRETLHKIDHRIHLARKKKYLEKNI-----IFQTILYIAQTACKNN 346
              L+   +      +   + K  L   I         +L  ++ A +  
Sbjct: 319 --ELLSYAMELALGGVSQVKNKPRLPPFIRYGFPQRLLLLAKSKEARRRR 366


>gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125]
 gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125]
          Length = 428

 Score = 36.5 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 20/184 (10%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC-----LEDILITEQHVKDI 209
              L      IS EA        GGD  ++ N L+ L+          +  IT    ++ 
Sbjct: 168 THGLGEEPVVISDEALAHFAFACGGDVRSALNGLE-LAVRSTQPNVKGEKEITLSVAEEC 226

Query: 210 I----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           I           D H   +     +     +  A+      + +           +  + 
Sbjct: 227 IQRKSFHHDKDGDAHYDVLSAFQKSIRGSDVNAALHYLARLIEAGDLVSIGRRLLVIAY- 285

Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPM-KRNILQESLRIWNKNLVRETLHKIDHRIH 318
             E I +    +       I+  E+   P  +  +    + +            +D  I 
Sbjct: 286 --EDIGLANPQAGPRTLAAIEAAERLGFPEGRIPLANAVVELCLSPKSNSAYVALDAAIA 343

Query: 319 LARK 322
             RK
Sbjct: 344 DIRK 347


>gi|118081968|ref|XP_417288.2| PREDICTED: similar to regulator of nonsense transcripts 2 [Gallus
           gallus]
          Length = 1272

 Score = 36.5 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  +++         +  I+ E K   +  +G        EL K   +   
Sbjct: 631 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFSKN 682

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 683 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 734

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 735 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 794

Query: 310 LHKI 313
           + K+
Sbjct: 795 MRKL 798


>gi|147903018|ref|NP_001089661.1| UPF2 regulator of nonsense transcripts homolog [Xenopus laevis]
 gi|71681268|gb|AAI00231.1| MGC115246 protein [Xenopus laevis]
          Length = 1264

 Score = 36.5 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 27/192 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  +++         +  I+ E K   +  +G        EL K   +   
Sbjct: 623 PCMSDIAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELAKFKMF--- 671

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           +   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 672 NKTDTLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSSDSHLRTSVLLEQMMRK 726

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 727 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 786

Query: 310 LHKIDHRIHLAR 321
           + K+  +    +
Sbjct: 787 MRKLSWQDLEVK 798


>gi|256826358|ref|YP_003150318.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM
           20547]
 gi|256689751|gb|ACV07553.1| DNA polymerase III, subunit gamma/tau [Kytococcus sedentarius DSM
           20547]
          Length = 796

 Score = 36.5 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 80/261 (30%), Gaps = 25/261 (9%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKKN-NTLRKIAEKFTSVLAISCYPDNKIHLMDLI 154
              + L +I+ +   + + I  + E +K   T+R     +   L           L + +
Sbjct: 135 AGFNALLKIVEEPPEHVLFIFATTEPEKVIGTIRSRTHHYPFRLVPP------AVLQEYL 188

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDIL-ITEQHVKDIICDT 213
            +       ++       ++   GG    S + L +L      D   IT      ++  T
Sbjct: 189 AQVCEREGITVEPGVLSYVVRAGGGSVRDSMSVLDQLI--AGSDDAGITLAGTTALLGFT 246

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIHIIKECS 271
               ++ +++A   G   +     +  + S            ++F   L E++  +   +
Sbjct: 247 DSELLDGVVDAYAAGDGASLFTTVERVVESGQDP--------RRFVEDLSERMRDLILVN 298

Query: 272 NISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH--RIHLARKKKYLEKN 329
            +      +     +   + + L+          +      + H            L+  
Sbjct: 299 AVPTGT--EAVLPGVPSDQLDRLRVQASGLGPAELSRASDVLFHGLAEMTGATSPRLQLE 356

Query: 330 IIFQTILYIAQTACKNNNFYK 350
           II   +L + + A +     +
Sbjct: 357 IIMARLL-LPRAAGEGGFAAR 376


>gi|90424701|ref|YP_533071.1| ABC transporter related [Rhodopseudomonas palustris BisB18]
 gi|90106715|gb|ABD88752.1| ABC transporter related [Rhodopseudomonas palustris BisB18]
          Length = 587

 Score = 36.5 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 40/231 (17%)

Query: 73  EINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKK--NNTLRKI 130
           E  +  + + +++ L+      K  L  L +    +     I I   +I +    +LR  
Sbjct: 361 EGLTLRIGAGQRVGLVGQSGGGKSSLFVLLQRF-YDPQAGRITIDGQDITRVTQQSLR-- 417

Query: 131 AEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE--------AKQILLANLG---- 178
                   AIS  P +       + E++  G+ + + +        A+   +  L     
Sbjct: 418 -------EAISVVPQDISLFHRSMLENIRYGRPTATDDEVLRAAIAARCDFVETLPEGLA 470

Query: 179 ---GDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
              GDR        KLS    +   I     +  + D  +L ++E   A + G    AI 
Sbjct: 471 TMVGDRGV------KLS--GGQRQRIAI--ARAFLKDAPILLLDEA-TAALDGDSEEAIR 519

Query: 236 LADFFLASKMPSHALLH--GFLQKFQLLEKIHIIKECSNISFEKIIQKTEK 284
            A   L       A+ H    L+ F  +  +   +   +     ++Q+   
Sbjct: 520 EALGRLMRGRTVIAIAHRLATLRNFDRVVMLQAGRIIEDGPPGHLMQRQGP 570


>gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group]
 gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
           Group]
 gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
           Group]
 gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group]
          Length = 1023

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           + ++I +     + I+ S  +   + +    +KF       C       +++ ++     
Sbjct: 489 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 542

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               + ++A +++ +   G    +   L +LS        I+   V++++       + +
Sbjct: 543 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 599

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           +++  +     N +        + +   AL          L  I         +F +  +
Sbjct: 600 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 650

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           +  +     K   L +     +   +R+ L  +       R     +   +   +L +A
Sbjct: 651 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 702


>gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera]
          Length = 785

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 18/160 (11%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISC--YPDN---KIHLMDLI 154
              + + +     + I  + ++          E     +   C  Y  N   +  ++  +
Sbjct: 583 AFLKFLEEPPPQVVFIFITPDL----------ENVPRTVLSRCQKYLFNKIKEGDIVARL 632

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTH 214
            +        +  +A +++  N  G    +   L +LS        IT   V D++    
Sbjct: 633 RKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLL---GKRITTSLVNDLVGVVS 689

Query: 215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              + E++   +       +  A   + S +    L+   
Sbjct: 690 DEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQL 729


>gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24]
          Length = 391

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            L  L +++L + QK I   AK  LL N  GD  A    L  L      +  IT + ++ 
Sbjct: 153 DLDRLCDKALTLLQKQIEPGAKTYLLNNSAGDARAL---LNLLDLSAKIENPITLKTLQS 209

Query: 209 I----------ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           +            DTH   I  +I +        +I      +A       +    
Sbjct: 210 LRPHSLNDGSYSDDTHYNLISALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265


>gi|241767459|ref|ZP_04765151.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii
           2AN]
 gi|241361752|gb|EER58047.1| DNA polymerase III, subunits gamma and tau [Acidovorax delafieldii
           2AN]
          Length = 377

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           + + L         +A ++L     G    + +   +          + E  V+ ++   
Sbjct: 192 LTQVLAAENVPAEPQALRLLSRAARGSMRDALSLTDQAI--AFGSGQLQEAAVRQMLGAV 249

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
              Y+  +I+A  QG     +  +D    + + + + L       Q +     + + + 
Sbjct: 250 DRSYVFRLIDALAQGDGRTVVETSDALRINGLSAASTLEEMSAVLQRMAVFQAVPQMAG 308


>gi|256831655|ref|YP_003160382.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans
           DSM 20603]
 gi|256685186|gb|ACV08079.1| DNA polymerase III, subunits gamma and tau [Jonesia denitrificans
           DSM 20603]
          Length = 872

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/172 (8%), Positives = 54/172 (31%), Gaps = 9/172 (5%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             ++  I +       +  +    +++   GG    + + L +L +       I+ +H  
Sbjct: 186 DTMLSYISQLCGQEGIAAGEGVLPLVVRAGGGSVRDTLSVLDQLIAGAQG-SAISYEHAV 244

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
            ++  T    ++++++A           + +  + +       +   L++F+ L  + + 
Sbjct: 245 ALLGYTPATLLDDVVDALAAHDGAALFRVIEEIINTGHEPRRFVEDLLERFRDLLIVALS 304

Query: 268 KECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
            + +       +          + N   + L       +       +  +  
Sbjct: 305 PDGAR-----AVLSALPADQYERMNHQAQQL---GAGHLTYAADTTNTALTE 348


>gi|224092772|ref|XP_002191559.1| PREDICTED: similar to UPF2 regulator of nonsense transcripts
           homolog [Taeniopygia guttata]
          Length = 1271

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 141 SCYPDNKIHLMDLIEESLLIG---QKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
            C  D    L  +++         +  I+ E K   +  +G        EL K   +   
Sbjct: 630 PCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIG--------ELTKFKMFSKN 681

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQK 257
           D   T   +K ++ D    +IE          +            S + +  LL   ++K
Sbjct: 682 D---TLHCLKMLLSDFSHHHIEMACTL-----LETCGRFLFRSPESHLRTSVLLEQMMRK 733

Query: 258 FQLLEK-IHIIKECSN-------ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRET 309
            Q +      +    N          EK ++K    +    R +L + L       V   
Sbjct: 734 KQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQ 793

Query: 310 LHKI 313
           + K+
Sbjct: 794 MRKL 797


>gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
           6506]
 gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
           6506]
          Length = 664

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           + E       +I+ +A Q++     G    + + L +LS        +T + V D++   
Sbjct: 189 LREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAG---EVTVEKVWDLVGAV 245

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
               +  ++ A         I      +        +L   
Sbjct: 246 PENDLMALLEAIASDTTETVIDCVRHLMDRGREPLLVLQNL 286


>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
           AAA [uncultured archaeon MedDCM-OCT-S05-C724]
          Length = 321

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 4/117 (3%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L   ++         ++KEA + L     GD    R  +  L         +T   V
Sbjct: 161 AEDLEKYLKFVASKENVKVTKEAFESLTYLAQGD---LRRAINGLQMAAAAKTEVTPDVV 217

Query: 207 KDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQLLE 262
              +       +++ + + + G    A    D   +   +    +L    +  + LE
Sbjct: 218 YQAVAAARPEEVKDALESALAGNFSTAREKLDTLQITYGLAGEDVLRQMHRTVRDLE 274


>gi|295112105|emb|CBL28855.1| DNA polymerase III, subunits gamma and tau [Synergistetes bacterium
           SGP1]
          Length = 576

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 91/259 (35%), Gaps = 22/259 (8%)

Query: 94  EKKVLDCLEEIIIKNICNHIIIIKSNE-IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152
                + L + + +     + I+ + E  K   T+R   +       I  +      + +
Sbjct: 104 SAAAFNALLKTLEEPPSYVVFILATTEPYKVPVTIRSRCQH------IPFHSIGARKIFE 157

Query: 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD 212
            +       + +   EA   +     G    + + L+++ +       +T + V+  +  
Sbjct: 158 HLTHVCEWERTAAQPEALWEVARQADGALRDALSMLEQIINRAAG--EVTLEDVESALGA 215

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
                +E  + + ++G+  ++ +     +    P H     F + F L++ + +     N
Sbjct: 216 GSRPAVERWL-SALKGEGSSSYVEFTKMMEGGSPQHV----FEELFSLVKNLWLAVRWPN 270

Query: 273 ISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIF 332
           ++ E  + +        ++  L E    W+   +R  L  + + +   R    ++  +  
Sbjct: 271 VTRELDVSE-------QEKKFLAEEAPRWSAEELRTLLEAVANLLVQVRLGVRIDI-LTG 322

Query: 333 QTILYIAQTACKNNNFYKR 351
             +L +++    +    +R
Sbjct: 323 LLMLELSRILEPDGAATRR 341


>gi|281414720|ref|ZP_06246462.1| DNA polymerase III, subunit gamma/tau [Micrococcus luteus NCTC
           2665]
          Length = 774

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L+  +E+       S+ K    +++    G    + + L +L +   ++  ++ +    +
Sbjct: 184 LIAYLEQLCAEEAVSVEKGVLPLVVRAGTGSVRDTLSVLDQLIAGA-QEGQVSYELAVSL 242

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++++I+A           + D  + S       +   L +F+ L     + E
Sbjct: 243 LGFTPEALLDDVIDAVAADDTPTVFRVVDRVVQSGQDPRRFVEDLLDRFRDLVIARALPE 302

Query: 270 CSN 272
            + 
Sbjct: 303 EAG 305


>gi|212697090|ref|ZP_03305218.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675865|gb|EEB35472.1| hypothetical protein ANHYDRO_01655 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 21/127 (16%)

Query: 146 NKIHLMDLI------EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199
               L  LI      ++ L      I K+A+  L+    GD  A  N L+ ++ +  ED 
Sbjct: 169 TNDDLHKLIGMALTKDKVLQNKNIKIDKDARNTLVKFSNGDCRALLNALE-IAIFSQEDK 227

Query: 200 ----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
                +  Q + + I           D H   I   I +        AI      L S  
Sbjct: 228 EGIIEVDRQSILNSIQKKISIYDRNGDRHYDTISAFIKSMRGSDPDAAIFYLAKMLNSGE 287

Query: 246 PSHALLH 252
               +  
Sbjct: 288 DIKFIAR 294


>gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG]
 gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG]
          Length = 431

 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%)

Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199
            +   I+ +L   +         ++ EA+  L     GD  A+ N  EL  LS+    D 
Sbjct: 154 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 213

Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244
            I               I  DT+     +II+A         +  A+      +A  
Sbjct: 214 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 270


>gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
 gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
          Length = 577

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 58/185 (31%), Gaps = 16/185 (8%)

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
            +   S++ +A  ++     G    + + + +           +   V+ ++       +
Sbjct: 203 ALEGASLAPDALALITRAAEGSVRDAMSLMDQAI--AHGAGETSAAQVRAMLGLADRGRV 260

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKI 278
            ++ +  ++G    A+       A      A+L    +    +  I        I+ E  
Sbjct: 261 LDLFDLVMKGDAAGALSELSAQYADGADPMAVLRDLAEITHWISVIK-------ITPEAA 313

Query: 279 IQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338
              T       +   L+ ++R+         L ++   +  + ++  L  N +    + +
Sbjct: 314 EDPTTPP--DERLRGLEMAVRL-----PMRALTRMWQMLLKSLEEVALAPNAMMAAEMAV 366

Query: 339 AQTAC 343
            +   
Sbjct: 367 IRLTH 371


>gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group]
          Length = 1079

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%)

Query: 101 LEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160
           + ++I +     + I+ S  +   + +    +KF       C       +++ ++     
Sbjct: 489 ISKVIERAPRRVVFILISPNLDLPHIIVSRCQKFFFPKLKEC------DIVNTLQWISTS 542

Query: 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEE 220
               + ++A +++ +   G    +   L +LS        I+   V++++       + +
Sbjct: 543 EGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLL---GQRISMSLVQELVGLVSDDKLVD 599

Query: 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280
           +++  +     N +        + +   AL          L  I         +F +  +
Sbjct: 600 LLDLALSADTVNTVKTLRDITETGVEPLAL-------MSQLATIITDILAGTYAFTQ--E 650

Query: 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339
           +  +     K   L +     +   +R+ L  +       R     +   +   +L +A
Sbjct: 651 RVRRKFF--KCPTLSKD----DMEKLRQALKTLSEAEKQLRVSND-KMTWLTAALLQLA 702


>gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 441

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 37/257 (14%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        + +        T    F  +      +  +I     E       + +
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139
           K IL  +       L   + ++       II+I +             E   ++++    
Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162

Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +P  +  ++ +IE +       L      I ++AK+++    GGD   + N L+ + 
Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVV 222

Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238
                      Y  ++ +I   + K  I D         I   I +        A+    
Sbjct: 223 YSSQARDDGKIYISQESVINLSNRKTAIYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282

Query: 239 FFLASKMPSHALLHGFL 255
             L S      +    +
Sbjct: 283 KMLDSGEDIKFIARRLI 299


>gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 441

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 37/257 (14%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        + +        T    F  +      +  +I     E       + +
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVN-DIKKIIEEAKIEFSQTGR 109

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139
           K IL  +       L   + ++       II+I +             E   ++++    
Sbjct: 110 KTILFIDEIHRFNKLQQ-DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162

Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +P  +  ++ +IE +       L      I ++AK+++    GGD   + N L+ + 
Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIEEDAKKLIAKLSGGDARVALNILEAVV 222

Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238
                      Y  ++ +I   + K  I D         I   I +        A+    
Sbjct: 223 YSSQARDDGKIYISQESVINLSNRKTAIYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282

Query: 239 FFLASKMPSHALLHGFL 255
             L S      +    +
Sbjct: 283 KMLDSGEDIKFIARRLI 299


>gi|306843634|ref|ZP_07476235.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
 gi|306276325|gb|EFM58025.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO1]
          Length = 602

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 61/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T   
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTADA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|283138932|gb|ADB12535.1| putative transcriptional regulator [uncultured bacterium 9F08]
          Length = 468

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 62  EIQKNISTFWNEINSTSLFSKKKIILI------ENLSTEKKVLDCLEEIIIKNICNHIII 115
           E+    +   +EI    L  + K++ +        L   + +   +  +   N       
Sbjct: 229 EMADGGTLLIDEIGELPLSLQTKLLRVLETGTFRRLGGTEYIQVNVRVLAATNK------ 282

Query: 116 IKSNEIKKNNTLRK--IAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ-----KSISKE 168
               E+ +N   R+          + I    D    +  L E  L   +       +S +
Sbjct: 283 -NLKEMSENGAFRQDLYYRLSAFPVNIPPLRDRPDDIPALAENFLSQIEEGDRFVPLSPD 341

Query: 169 AKQ-ILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV 215
             + +L  +  G+    RN +++ +     + L+  +H+  +  D   
Sbjct: 342 VIETLLSHHYPGNVRELRNVIERAAILAYGEELLRPEHIL-VESDAAE 388


>gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2150]
 gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
           bacterium HTCC2150]
          Length = 596

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 44/138 (31%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               ++ +++ +      +I+ +A  ++     G    +++ L +           T   
Sbjct: 190 EPEVMIKMLQGNAASENANITDDALALITRAAEGSARDAQSLLDQAI--SHGAGETTADQ 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++    ++G    A+       +      A+L    +    +  I 
Sbjct: 248 VRAMLGLADRGRVMDMFEMIMRGDAAGALAELSAQYSDGADPLAVLRDLAEITHWVSVIK 307

Query: 266 IIKECSNISFEKIIQKTE 283
           I  + +        ++  
Sbjct: 308 ITPDAAEDPTVGPDERAR 325


>gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
 gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
          Length = 421

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 48/186 (25%), Gaps = 26/186 (13%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII----------CD 212
             +     + + +  GGD   + N ++ L+     +  +T +  + +            D
Sbjct: 177 LEVEDGVYEYIASACGGDVRKAVNAVELLALAAGANQTVTLEEARQVAQKSAMRYDRDGD 236

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
            H   +  +  +        A+      L +           L   + L  I        
Sbjct: 237 EHYDILSALQKSIRGSDENAALHYLARLLEAGD--------LLSPCRRLLVIASEDIGLA 288

Query: 273 ISFEKII------QKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYL 326
                +I         +  +   +  + Q ++ +            ID  +   R    L
Sbjct: 289 YPMAAVIVKACVDSALQLGLPEARIPLAQAAVLLATAPKSNSAYSGIDAALADVR--AGL 346

Query: 327 EKNIIF 332
              I  
Sbjct: 347 AGPIPR 352


>gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4]
 gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4]
          Length = 435

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 22/191 (11%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII---- 210
           E  L     +I  +A   +    GGD   + N L+  +S    + +++    ++ +    
Sbjct: 185 ERGLGALDLAIEDDALTFMAEQAGGDARVALNTLET-ASRLTSNGVVSLDTAREAVQKKP 243

Query: 211 ------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKI 264
                  + H   I   I +        A+      + +      +L       +++   
Sbjct: 244 LLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPIFILR------RMVILA 297

Query: 265 HIIKECSNISFEKIIQKTEKNI----IPMKRNILQESLRIW-NKNLVRETLHKIDHRIHL 319
                 ++    ++     +      +P  R I+ +++           +   ID  +  
Sbjct: 298 SEDIGNADPRALQVAVTALQGFQLVGMPEGRIIIGQAVTYLATAPKSNASYVGIDAALAE 357

Query: 320 ARKKKYLEKNI 330
            RK   L   +
Sbjct: 358 VRKSGALPVPL 368


>gi|323136736|ref|ZP_08071817.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
           49242]
 gi|322398053|gb|EFY00574.1| DNA polymerase III, subunits gamma and tau [Methylocystis sp. ATCC
           49242]
          Length = 610

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 90/286 (31%), Gaps = 28/286 (9%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            ++    +      + ++ K+ +I+ +    K   + L + + +   +   I  + EI K
Sbjct: 138 DDVREIIDNARYRPVMARTKVYIIDEVHMLSKAAFNGLLKTLEEPPEHVKFIFATTEIDK 197

Query: 124 -NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI 182
              T+R   ++F           +   L   +         +I  +A  ++     G   
Sbjct: 198 VPVTVRSRCQRFDLRRI------DAGLLASHLRGICEKENVAIEPDALAMIARAAEG--- 248

Query: 183 ASRNELQKL------SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIML 236
           ++R+ L  L       S       I    ++ ++       + ++    + G +  AI L
Sbjct: 249 SARDALSLLDQAIAYGSAHAAGGAIAADDLRLMLGVADKARVIDLFETVMAGDVGRAIAL 308

Query: 237 ADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQE 296
            +           +L    +   L  ++ +  E +  +           + P ++    +
Sbjct: 309 LEDQYNGGADPAQVLLELAEFTHLATRLKLAPETAQSAA----------LTPEEKRRGSD 358

Query: 297 SLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
           +    +   +      +   +   R  +   +      ++ +A  A
Sbjct: 359 AAERLSVPALTRAWQILMKGVDELRGSQRPLQA-ADMVLVRLAYAA 403


>gi|306842673|ref|ZP_07475317.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
 gi|306287182|gb|EFM58681.1| DNA polymerase III, subunits gamma and tau [Brucella sp. BO2]
          Length = 602

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQALSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
 gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 425

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 22  FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEI-NSTS 78
              + +G        L+    ++        + L  +NA + +  ++I         S +
Sbjct: 45  KAALLHGPPGCGKTSLVEAVARSKG------YQLFEMNASDARRKEDIDRIVKLASRSGA 98

Query: 79  LFSKKKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           L   +KIIL++ +       +   ++ L E+I      + II+ +N    +  LR + E 
Sbjct: 99  LTGSRKIILLDEVDGMDPRADAGGIEALVEVIKA--TANPIIMTANN-PYSQALRPLREL 155

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
                 I     ++  ++ ++++     +     EA + +     GD  ++ N+L+ L  
Sbjct: 156 SE---VIGFKRLSESVVVKVLKKICGAEKLFCEDEALREIARRSEGDLRSAINDLEAL-- 210

Query: 194 YCLEDILITEQHVKDI 209
                  +T   VK++
Sbjct: 211 -AGLSGGVTVNAVKEL 225


>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 316

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 27/182 (14%)

Query: 105 IIKNICNHIIIIKSNEIKKN--NTLRKIAEK---------------------FTSVLAIS 141
           I +     I + +++ +  +  + LR+  EK                      +  +   
Sbjct: 94  IARVPVKIIFLDEADALTADAQHALRRTMEKFSAETRFILSANYASKIIEPIQSRCVVFR 153

Query: 142 CYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILI 201
             P  +  + + +   +     ++ K A + L+    GD     N LQ  +    +   I
Sbjct: 154 FKPLTEDDMKEYVNRIVKGEGITLEKNAMEALIYVGDGDLRKLTNVLQSAAM---KSEKI 210

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF-LASKMPSHALLHGFLQKFQL 260
           TE  + D+        I  ++   + G    A    D   L   M    +L    ++ Q 
Sbjct: 211 TEGDIYDVASRARPKEIMSMLRYAVDGDFDKARNELDTLTLKHGMSGEDILTQCYREAQN 270

Query: 261 LE 262
           L 
Sbjct: 271 LH 272


>gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum 'So ce 56']
 gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum 'So ce 56']
          Length = 829

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 36/124 (29%), Gaps = 1/124 (0%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQH 205
              +   +   L   +      A   L     G    + + L ++ ++       IT + 
Sbjct: 216 AQAIAARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEG 275

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V  ++     + +  +  A + G     + +             +   FL   + L    
Sbjct: 276 VAKVLGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAK 335

Query: 266 IIKE 269
           + ++
Sbjct: 336 VCED 339


>gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae
           DFL 12]
 gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12]
          Length = 587

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/101 (9%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           +     + +  I+ +A  ++     G    + + L +           T + V+ ++   
Sbjct: 199 LRRIAGLERAEITDDALALITRAAEGSVRDAMSLLDQAI--SHGAGETTAEQVRAMLGLA 256

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
               + ++ +  ++G    A+       +      A+L   
Sbjct: 257 DRGRVMDLFDLVMRGDAAGALTELSAQYSDGADPMAVLRDL 297


>gi|330941783|gb|EGH44532.1| type I restriction-modification system endonuclease [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 1142

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 143 YPDNKIHLMDLIEESLLIGQKSISKEAKQI--LLANLGGDRIASRNELQKL-SSYCLEDI 199
           + DN   +    ++      ++   +A ++  L A L G ++ S  +++KL + Y     
Sbjct: 727 FADNAEAVKAAFQDYYRATIQTGETDANKLHDLKAELDGQQVYSWQQVEKLVAFYLGGAD 786

Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLA 242
             T   + DI  + +   ++E      +GK    +    F  A
Sbjct: 787 RDTLDPILDICVEEYKDNLDEDGQVKFKGKAKAFVRSYGFLAA 829


>gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           BVS033A4]
 gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
           BVS033A4]
          Length = 537

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 70/179 (39%), Gaps = 10/179 (5%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            L +I+ +   + + I+ + EI K   T+    +++   +       N   + D I+  L
Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NSKDISDNIKYIL 189

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
               + +  +A +++     G    + + L ++    +E   IT+Q + DI+       I
Sbjct: 190 NDLNRKMDDDAIELIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
            +++N+ I+      +    + ++   P   ++   L  F+ L       E    +  +
Sbjct: 248 FKLVNSIIKKDATEVLGNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLEKIRQNNTQ 305


>gi|294674298|ref|YP_003574914.1| DNA polymerase III subunits gamma and tau [Prevotella ruminicola
           23]
 gi|294473273|gb|ADE82662.1| DNA polymerase III, subunits gamma and tau [Prevotella ruminicola
           23]
          Length = 601

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
            + +D ++        +  ++A  ++     G    + +   + +S+C     IT + V 
Sbjct: 182 RNTIDHLKHVAEQEGITYEEQALAVIAEKADGGMRDALSIFDQAASFC--QGNITYEKVI 239

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           + +         +II+  I  K+ + ++L +  +        L+ G  +  + +      
Sbjct: 240 EDLNVLDSENYFKIIDLAIDNKVSDIMVLLNGVINKGFDGGLLIQGLAKHVRNVLMAR-- 297

Query: 268 KECSNISFEKIIQKTE 283
            +   +   ++  +  
Sbjct: 298 -DPQTLPLLEVSDQMR 312


>gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27]
 gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27]
          Length = 459

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 155 EESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC--- 211
           +  L     SI  +A+ +L  +  GD       L+  +S   +   I    V+  +    
Sbjct: 187 DRGLGARGLSIDDDARHLLAESSDGDARRLLGVLEAAASLVDDGGAIVRATVEAAMQYRP 246

Query: 212 ---DTHVLYIEEIINA---TIQG-KIYNAIMLADFFLASKMPSHALLHGFLQ 256
              D        +I+A    ++G   + A+      +        +    ++
Sbjct: 247 PRYDKSGEEHYNLISALHKALRGSDPHGALYWLARMIQGGEDPRYIARRMVR 298


>gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 438

 Score = 36.1 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 39/258 (15%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            IFYG   G          K I+ T    F  +       +          +S  ++ KK
Sbjct: 55  LIFYGP-PGTGK---TTLAKVIANTTSADFKQINATVAGKKDMEDVVKAAKDSLGMYGKK 110

Query: 84  KIILIENLST-EKKVLDCLEEIIIKNICNHIIII----KSNEIKKNNTLRKIAEKFTSVL 138
            I+ ++ +    K   D L   +       +I+I    ++   + N+ L       +  +
Sbjct: 111 TILFVDEIHRFNKGQQDYLLPFVE---DGTLILIGATTENPYFEVNSAL------ISRSV 161

Query: 139 AISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKL 191
                P +K  +  LI+ +       +      I  +AK  L     GD  A+ N ++  
Sbjct: 162 VFELKPLSKEDICTLIDRAINDKERGMGNYNAVIDGDAKDFLADVADGDARAALNAVELG 221

Query: 192 SSYCL----EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLA 237
                      I +T +   + I           D H   I   I +        A+   
Sbjct: 222 ILTTERSGDGKIHLTLEVASECIQKRAVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYL 281

Query: 238 DFFLASKMPSHALLHGFL 255
              L +      +    +
Sbjct: 282 ARMLYAGESVTFIARRIM 299


>gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 441

 Score = 36.1 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 73/257 (28%), Gaps = 37/257 (14%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKK 83
            I YG        + +        T    F  +      +              S   KK
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT----FKTINATIAGVNDIKKIIEEAKIEFSQTGKK 110

Query: 84  KIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA---- 139
            I+ I+ +    K+    + ++       II+I +             E   ++++    
Sbjct: 111 TILFIDEIHRFNKLQQ--DALLPSVEEGIIILIGATTENP------FYEVNKALVSRSLV 162

Query: 140 ISCYPDNKIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLS 192
              +P  +  ++ +IE +       L      I  +AK+++    GGD   + N L+ + 
Sbjct: 163 FELFPLKEEDILKIIERAISDKENGLGELNIQIDDDAKKLIAKLSGGDARVALNILEAVV 222

Query: 193 ----------SYCLEDILITEQHVKDIICDTHV----LYIEEIINATIQGKIYNAIMLAD 238
                      Y  +  +I     K +  D         I   I +        A+    
Sbjct: 223 YSSSAQDDGKIYISQKSVINLSSRKTVNYDATGDMHYDTISAFIKSVRGSDPDAALFYLA 282

Query: 239 FFLASKMPSHALLHGFL 255
             L S      +    +
Sbjct: 283 KMLDSGEDIKFIARRLI 299


>gi|148559186|ref|YP_001258081.1| DNA polymerase III subunits gamma and tau [Brucella ovis ATCC
           25840]
 gi|148370443|gb|ABQ60422.1| replication factor C conserved domain:ATP/GTP-binding site motif A
           [Brucella ovis ATCC 25840]
          Length = 602

 Score = 36.1 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/203 (9%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGADSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 I---IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARK 322
               + E  ++S ++ ++  E      +   ++   R W   ++ + + ++D      + 
Sbjct: 308 FTPDVAEDVSLSEDERVRGRE----FAQTLSIRALSRTW--QMLLKGIAEVDTATRPVQA 361

Query: 323 KKYLEKNIIFQTILYIAQTACKN 345
            + L   +     L     A + 
Sbjct: 362 AEMLLIRLAHAADLPTLDEAIRG 384


>gi|163782754|ref|ZP_02177750.1| mating pair stabilization and pilus assembly protein
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881875|gb|EDP75383.1| mating pair stabilization and pilus assembly protein
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1292

 Score = 36.1 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 202 TEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLL 261
           T+Q+ ++I+ +   L+++ + +    G +  A   A   +++       L    ++ Q L
Sbjct: 880 TKQNSREIVAEAAHLFLQSVADDLFGGDVRKATEWAIDVISNPRTVQGRLESVNKQIQQL 939

Query: 262 EKIHIIKECSNISFEK 277
           + +    E +++S ++
Sbjct: 940 QSL---VESNDLSEDE 952


>gi|169236316|ref|YP_001689516.1| replication factor C large subunit [Halobacterium salinarum R1]
 gi|42559531|sp|Q9HPI4|RFCL_HALSA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|226739138|sp|B0R601|RFCL_HALS3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|167727382|emb|CAP14170.1| replication factor C large subunit [Halobacterium salinarum R1]
          Length = 471

 Score = 36.1 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 83  KKIILIENLST-----EKKVLDCLEEIIIKNICNHIIIIKSNEI-KKNNTLRKIAEKFTS 136
           +K++L++         ++     +  ++        I++ +NE  + +++LR        
Sbjct: 99  RKLVLLDEADNLHGNIDRGGSAAITRLVDDAPQ--PIVLVANEYYEMSSSLRSAC----- 151

Query: 137 VLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL 196
              I     +K  ++ ++ +       +  ++A   +     GD  ++ N+LQ L     
Sbjct: 152 -REIEFRDVSKRSIVPVLRDVCRREDVTYEEDALAAIAEQNAGDLRSAVNDLQAL---AE 207

Query: 197 EDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
           +D  +T   V     D      + + +         A+  A
Sbjct: 208 QDRTLTADDVVMGERDRTEGVFDYLDDVIATHSAREALQAA 248


>gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
           29328]
 gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
           29328]
          Length = 537

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 71/179 (39%), Gaps = 10/179 (5%)

Query: 100 CLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESL 158
            L +I+ +   + + I+ + EI K   T+    +++   +       N   + D I+  L
Sbjct: 136 ALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMI------NSKDISDNIKYIL 189

Query: 159 LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYI 218
               + +  +A +++     G    + + L ++    +E   IT+Q + DI+       I
Sbjct: 190 NDLNRKMDDDAIELIANKADGAMRDALSILDQVL--SIEKENITKQDINDILGIVDNKGI 247

Query: 219 EEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEK 277
            +++N+ I+    + +    + ++   P   ++   L  F+ L       E    +  +
Sbjct: 248 FKLVNSIIKKDATDVLGNL-YTISHNKPVENVMDELLNHFRNLLLSKNGLEKIRQNNTQ 305


>gi|148272079|ref|YP_001221640.1| DNA polymerase III subunits gamma and tau [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830009|emb|CAN00937.1| DNA polymerase III gamma and tau subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 826

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 13/135 (9%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDII 210
           D +E         ++     +++   GG    + + L +L      ED  +  +    ++
Sbjct: 186 DYVEHLSREESVQVAPGVLPLVVRAGGGSVRDTLSLLDQLI--AGSEDESVEYERAVALL 243

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF--QLLEKIHIIK 268
             TH   ++E+I+A  +     A    D  + +            ++F   LLE++  + 
Sbjct: 244 GYTHAALLDEVIDAVARHDAAGAFAGVDRVIQTGQDP--------RRFVEDLLERLRDLI 295

Query: 269 ECSNISFEKIIQKTE 283
                S E       
Sbjct: 296 IVGATSVEGAAAVLR 310


>gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684]
 gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684]
          Length = 427

 Score = 36.1 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII----------CD 212
            S+  +A ++L A  GGD   +   L+ L+     +  +T +H +D +           D
Sbjct: 191 VSVDDDALELLAARSGGDARTALAALE-LACDTAPESKVTLEHAEDALQRRILHYDRASD 249

Query: 213 THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            H   I   I AT       ++      L        +  
Sbjct: 250 HHYDTISAWIKATRGSDPDASLYYLAVMLEGGEDPRFIAR 289


>gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           FZB42]
 gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42]
          Length = 422

 Score = 36.1 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 53/194 (27%), Gaps = 25/194 (12%)

Query: 148 IHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI----L 200
             L   + +    L     S+  +A        GGD  ++ N L+       E       
Sbjct: 156 QALERALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIR 215

Query: 201 ITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           IT +  ++ +           D H   +     +        A+      + +       
Sbjct: 216 ITRETAEECLQKKSYTHDKNGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGD----- 270

Query: 251 LHGFLQKFQLLEK--IHIIKECSNISFEKIIQKTEKNIIPMKR-NILQESLRIWNKNLVR 307
           L    ++  ++    I +    +       IQ  E+   P  R  +    + +       
Sbjct: 271 LESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAVIELCLSPKSN 330

Query: 308 ETLHKIDHRIHLAR 321
             +  +D  +   R
Sbjct: 331 SAISAVDEALKDIR 344


>gi|29840175|ref|NP_829281.1| hypothetical protein CCA00413 [Chlamydophila caviae GPIC]
 gi|29834523|gb|AAP05159.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 311

 Score = 36.1 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 21/233 (9%)

Query: 76  STSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFT 135
           S  LF+ K++I I       +          +N   H+I+       K +  + + ++ +
Sbjct: 63  SYGLFASKEVISIFQAEKLSQQTRDFLIRYARNPRPHLIVFLFT--TKQSCFQSLRKELS 120

Query: 136 SVLAISCY----PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQK 190
           S   +S +     D +  +  L+ +   +   + S       +     G+      E  K
Sbjct: 121 SAAFLSLFGEWQSDREKRMTVLLSQRAALLGVTCSLALASAFIKKFPLGEMHNLIGEFHK 180

Query: 191 LSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           L     +   +    ++  +     + + ++ +A +Q     +  L    L         
Sbjct: 181 LLCCIGKKQALEYSDIESFVVKKEQVSLWKLRDAILQRNTAESQALLRALLLEHGEDPLG 240

Query: 251 LHGFLQKFQLLEKIH-IIKECSNISFEKIIQKTEKNIIPMK--RNILQESLRI 300
           L  FL+  Q L  +  + KE ++           K+   +   +  L ++L  
Sbjct: 241 LIAFLR-GQCLYGLRSLEKETAD----------RKHRFFIAYGKERLHQALSH 282


>gi|146337878|ref|YP_001202926.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
           ORS278]
 gi|146190684|emb|CAL74688.1| Putative DNA polymerase III (gamma and tau subunits)
           [Bradyrhizobium sp. ORS278]
          Length = 615

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               LM  +         +I  EA  I+     G    S + L +          +    
Sbjct: 203 EADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAI--AHSAGEVRADD 260

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++ +    G I  A                +L    +    + ++ 
Sbjct: 261 VRQMLGLADRTRVIDLFHYLASGDIAAAFKEFREQYDVGADPVVVLSDLAEFVNFVTRVK 320

Query: 266 IIKECSNISFEKIIQKTE 283
           ++   ++       ++  
Sbjct: 321 VVPATADNVAFSETERLR 338


>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
          Length = 331

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 38/269 (14%)

Query: 24  FIFYGS-DKGLIFELINQFKKNISITYHDPFSLVVLNALE---IQKNISTFWNEINSTSL 79
            +FYG    G    ++   K      Y +   ++ LNA +   I    +   +  ++  +
Sbjct: 45  LLFYGPPGTGKTSTIVALAKDIYGKNYSN--MVLELNASDDRGIDVVRNQIKDFASTRQI 102

Query: 80  FS-KKKIILIENLSTEKKVLD-CLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
           FS   K+I+++            L  II K   N    I          L   + K T  
Sbjct: 103 FSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCI----------LANYSHKITPA 152

Query: 138 LAISC-----YPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDR-------IASR 185
           L   C      P     +   +   L+     IS  AK+ LL    GD         AS+
Sbjct: 153 LLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRISPAAKEALLELSNGDMRRVLNVLQASK 212

Query: 186 NELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
             L+        +  IT++ + +         I+ I+ + ++     A        +S  
Sbjct: 213 ATLE------SPEDEITDEVIYECCGAPRPQDIQTILKSILEDDWSTAYDTLTRIRSSN- 265

Query: 246 PSHALLHGFLQKFQLLEKIHIIKECSNIS 274
              AL+       ++LE+  + KE + IS
Sbjct: 266 -GLALIDLIESIVKILEEYKLKKEETRIS 293


>gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Coprococcus catus GD/7]
          Length = 444

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 21/130 (16%)

Query: 147 KIHLMDLIEES-------LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY----C 195
              +  LI  +       +      IS +A   L    GGD   + N ++          
Sbjct: 170 AEDIGVLIRRAVYDTERGMGSYGAEISDDAVDFLADMSGGDARMALNAVELGVLTTEPSA 229

Query: 196 LEDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM 245
              I IT     + I           D H   I   I +        AI      L +  
Sbjct: 230 DGKIHITVDVASECIQRRVMRYDKNGDNHYDTISAFIKSMRGSDPDAAIYYLARMLYAGE 289

Query: 246 PSHALLHGFL 255
               +    +
Sbjct: 290 EPAFIARRIM 299


>gi|86608779|ref|YP_477541.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 779

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 3/120 (2%)

Query: 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVK 207
             ++  + +        I+ EA Q++     G    +   L +LS     +  IT + V 
Sbjct: 185 DDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLL---EGSITPEAVW 241

Query: 208 DIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHII 267
           D++       +  +++A +   +   +      L       ALL   +  ++ L  +   
Sbjct: 242 DLVGGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTA 301


>gi|297625597|ref|YP_003687360.1| hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921362|emb|CBL55915.1| Hypothetical protein PFREUD_03820 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1134

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 12/203 (5%)

Query: 150 LMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDI 209
           L D +E+  +     +      +++    G    S + L +L      D  ++ Q    +
Sbjct: 271 LTDYLEKICVEEHVQVEPGVLPLVVRAGAGSVRDSLSVLDQLLGSAGADG-VSYQQATSL 329

Query: 210 ICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           +  T    ++E+++A   G         D  +             L   Q L  + I+ +
Sbjct: 330 LGYTPDALLDEMVDALAAGDGKGVFGTIDKVIEIGQDPRRFAEDLL---QRLRDLVIVAD 386

Query: 270 CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLE-- 327
             +     +I          +    +    +     +      I   +   R        
Sbjct: 387 VPDALSSGLIDVAA-----DQAQRFEHQAALIGPGELTRAAEVIASGLTHMRGTTAPRLH 441

Query: 328 -KNIIFQTILYIAQTACKNNNFY 349
            + +  + +L  A    +  +  
Sbjct: 442 LELMCARILLPGADVDGRGTHAR 464


>gi|296270023|ref|YP_003652655.1| AAA ATPase central domain-containing protein [Thermobispora bispora
           DSM 43833]
 gi|296092810|gb|ADG88762.1| AAA ATPase central domain protein [Thermobispora bispora DSM 43833]
          Length = 436

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 15/120 (12%)

Query: 145 DNKIH-LMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILIT 202
           D     L   + +   +    ++  EA + L+   GGD   S   L+  +    +   IT
Sbjct: 173 DEIRTVLERAVADERGLAGRVTLRPEALEQLIRLAGGDARRSLTYLEAAALLAED---IT 229

Query: 203 EQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
              V+  +           D H   +   I +     +  A+      + +      +  
Sbjct: 230 VDVVERAVDKAAVRYDRQGDQHYDVVSAFIKSMRGSDVDAALHYLARMIEAGEDPRFIAR 289


>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
          Length = 350

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDT 213
           I          IS+ A + L++   GD   + N LQ  S + L +  IT   V+D+    
Sbjct: 200 IRHIREAENVQISENAVEELISVAAGDMRRAVNFLQ--SLHRLHEDEITPDDVRDVAILC 257

Query: 214 HVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFL 255
               I+E+I         N +      L    P+   +H   
Sbjct: 258 PAEKIDEVIREARSKSYENMLTKVQALLQDGYPAGQFMHQLQ 299


>gi|229820501|ref|YP_002882027.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566414|gb|ACQ80265.1| AAA ATPase central domain protein [Beutenbergia cavernae DSM 12333]
          Length = 484

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 17/126 (13%)

Query: 144 PDNKIHLMDLIEESLLIGQ-KSISKEAKQILLANLGGDRIASRNELQKLSSYCL------ 196
            D    +   +++   +    ++  +A+  LL   GGD   +   L+  +          
Sbjct: 181 ADVARLVDRALDDERGLAGRYTLDDDARAHLLRLAGGDARKALTILEAAAGTAALPGAGD 240

Query: 197 EDILITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMP 246
           +   I  + V+  +           D H       I +     +  A+      +A+   
Sbjct: 241 DARGIDLEAVERAVDVAAVRYDRDGDQHYDVTSAFIKSMRGSDVDAALHYLARMVAAGED 300

Query: 247 SHALLH 252
              +  
Sbjct: 301 PRFIAR 306


>gi|329942761|ref|ZP_08291540.1| DNA polymerase III, delta subunit [Chlamydophila psittaci Cal10]
 gi|332287357|ref|YP_004422258.1| DNA polymerase III subunit delta [Chlamydophila psittaci 6BC]
 gi|325506794|gb|ADZ18432.1| DNA polymerase III subunit delta [Chlamydophila psittaci 6BC]
 gi|328815021|gb|EGF85010.1| DNA polymerase III, delta subunit [Chlamydophila psittaci Cal10]
 gi|328914601|gb|AEB55434.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
          Length = 311

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 61/193 (31%), Gaps = 22/193 (11%)

Query: 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLG-GDRIASRNELQKLSSYCLEDILITE 203
           D +  +  L+ +   +   S S     + +      +      E  KL        ++  
Sbjct: 134 DMEKRMATLLSQKASLLGISCSLALASVFIKKFPQAEMHTLLGEFHKLLCCLGGKQVLEY 193

Query: 204 QHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEK 263
             +++ +     + + ++ +A +Q     +  +    L         L  FL+  Q L  
Sbjct: 194 NDIENFVVKQEQVSLWKLRDAVLQRNTSASQAMLQALLHEHGEEPLGLIAFLR-GQCLYG 252

Query: 264 IHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323
           +  ++E +            K+   +           + K  + + L  + +   +  K 
Sbjct: 253 LRSLEEETGD---------RKHRFFI----------AYGKERLHQALSYLFYAESII-KN 292

Query: 324 KYLEKNIIFQTIL 336
              +  I  +T+L
Sbjct: 293 NTQDPIIAMETLL 305


>gi|289450158|ref|YP_003475319.1| DNA polymerase III subunit gamma and tau [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184705|gb|ADC91130.1| DNA polymerase III, subunit gamma and tau [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 612

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 24/214 (11%)

Query: 65  KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNICNHIIIIKSNEIKK 123
            NI    +E+       K K+ +I+ +        + L + + +   + + I+       
Sbjct: 102 DNIRRICDEVAFAPTTCKYKVYIIDEVHMLSVGAFNALLKTLEEPPEHIVFIL------- 154

Query: 124 NNTLRKIAEKFTSVLAI--SCYPDNKIHL-----MDLIEESLLIGQKSISKEAKQILLAN 176
                   +       I   C   +   L        +              A + L   
Sbjct: 155 -----ATTDPQRIPATILSRCQRYDLRALSLTEIASRLRLIATENDIKADDSAIEALAGL 209

Query: 177 LGGDRIASRNELQKLSS-YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235
             G   A R+ +  L           +   V  ++  +       + +    G     I 
Sbjct: 210 AKG---AMRDAISLLDQCRVSFSTTFSRDDVFRLVGRSGDAETAMLTDRLFAGDPAGMIK 266

Query: 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKE 269
           + D  ++S    + +  G L  ++ +    I  E
Sbjct: 267 ILDEMVSSGNEINRITQGLLMHWRNIMLCQIKAE 300


>gi|207725134|ref|YP_002255531.1| hypothetical protein RSMK03520 [Ralstonia solanacearum MolK2]
 gi|206590366|emb|CAQ37327.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 445

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182
            +R  A       A+     +   L  L +E    +     +I ++A   L  +LG D  
Sbjct: 324 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 383

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213
            +R E+ +L S           H+   +  +
Sbjct: 384 QARREVLRLISMLAPQSSFVATHLSQALGHS 414


>gi|254713381|ref|ZP_05175192.1| DNA polymerase III subunits gamma and tau [Brucella ceti M644/93/1]
 gi|254716261|ref|ZP_05178072.1| DNA polymerase III subunits gamma and tau [Brucella ceti M13/05/1]
 gi|261218037|ref|ZP_05932318.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
 gi|261321113|ref|ZP_05960310.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
 gi|260923126|gb|EEX89694.1| DNA polymerase III gamma and tau [Brucella ceti M13/05/1]
 gi|261293803|gb|EEX97299.1| DNA polymerase III gamma and tau [Brucella ceti M644/93/1]
          Length = 602

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/126 (7%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               L   +       +  +   +  ++     G    S +   +          +T + 
Sbjct: 190 ESGTLAQHLRRIAEAEKIEVDDASLAMIARAGEGSARDSLSIFDQAI--AHGAGSVTAEA 247

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       I ++    ++G +  A+               +L        L+ ++ 
Sbjct: 248 VRSMLGLADRARIIDLFEMLMRGDVAGALTEFRAQYDVGADPSVVLTDLADFNHLVTRLR 307

Query: 266 IIKECS 271
              + +
Sbjct: 308 FTPDVA 313


>gi|154508869|ref|ZP_02044511.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798503|gb|EDN80923.1| hypothetical protein ACTODO_01380 [Actinomyces odontolyticus ATCC
           17982]
          Length = 447

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 21/128 (16%)

Query: 146 NKIHLMDLIEESLL-----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---- 196
           +   +  LI  +L       G+ SI+ EA   L+   G D   +R  L  L +       
Sbjct: 179 DSDAIEGLIRRALADERGLAGRFSITDEAVAGLVRLAGSD---ARKSLTLLEAAAGVASD 235

Query: 197 -EDILITEQHVKDIIC--------DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
                IT   V+            D H       I +     +  ++      + +    
Sbjct: 236 DGSGEITVASVEAAANQALVRWSKDQHYDVASAFIKSMRGSDVDASLHYLARMIEAGEDP 295

Query: 248 HALLHGFL 255
             +    +
Sbjct: 296 RFIARRIM 303


>gi|134111509|ref|XP_775589.1| hypothetical protein CNBE0090 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258250|gb|EAL20942.1| hypothetical protein CNBE0090 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 2076

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)

Query: 164  SISKEAKQILLANLGGDR-----------IASRNELQKLSSYCLEDILITEQHVKDIICD 212
             +  EA+ +L    G +R           +A+ NEL K+    L    ITE H + I+ D
Sbjct: 1391 GVDAEAEYVLRRLGGKNRETDVAIAKGNFLAAWNELLKVGLTLLFARHITEDHQEAILFD 1450

Query: 213  THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
                 + E + A + G+I  A  + D    S +     L G LQKF+ +    +  E   
Sbjct: 1451 -----LLEGLLARLDGEIDLAPGVEDLLCESSLVVMTTLVGVLQKFEGVN---LPVEQLG 1502

Query: 273  ISFEKIIQKTEKN 285
                K++    + 
Sbjct: 1503 AVLAKVVDAATRP 1515


>gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462]
          Length = 305

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 21/117 (17%)

Query: 149 HLMDLIEESLLIGQ-------KSISKEAKQILLANLGGDRIASRN--ELQKLSSYCLEDI 199
            +   I+ +L   +         ++ EA+  L     GD  A+ N  EL  LS+    D 
Sbjct: 180 DISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLELAVLSTPAKSDG 239

Query: 200 LITEQ--------HVKDIICDTHVLYIEEIINA----TIQGKIYNAIMLADFFLASK 244
            I               I  DT+     +II+A         +  A+      +A  
Sbjct: 240 TIIIDLTTIQQSLQKPAISGDTNGDAHYDIISAFQKSIRGSDVNAALHYLARLIAIG 296


>gi|293192677|ref|ZP_06609631.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
 gi|292820184|gb|EFF79181.1| ATPase, AAA family [Actinomyces odontolyticus F0309]
          Length = 447

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 21/128 (16%)

Query: 146 NKIHLMDLIEESLL-----IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCL---- 196
           +   +  LI  +L        + SI+ EA   L+   G D   +R  L  L +       
Sbjct: 179 DSDAIEGLIRRALADERGLARRFSITDEAVAGLVRLAGSD---ARKSLTLLEAAAGVASD 235

Query: 197 -EDILITEQHVKDIIC--------DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS 247
                IT   V+            D H       I +     +  ++      + +    
Sbjct: 236 DGSGEITVASVEAAANQALVRWSKDQHYDVASAFIKSMRGSDVDASLHYLARMIEAGEDP 295

Query: 248 HALLHGFL 255
             +    +
Sbjct: 296 RFIARRIM 303


>gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits, putative
           [Dehalococcoides ethenogenes 195]
 gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative
           [Dehalococcoides ethenogenes 195]
          Length = 559

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 62/165 (37%), Gaps = 18/165 (10%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            +   +E+       +I  EA +++  + GG      N LQ+++        I+   V+ 
Sbjct: 183 DMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIA--TTYGTEISLPQVQA 240

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQL--LEKIHI 266
            +  +    I+ +    ++  I N +   +  +A  +         L++F+   L+ +  
Sbjct: 241 ALGISGDERIKTLAENILKKDIKNGLQTLNAVVADGID--------LKQFRRELLDYLRQ 292

Query: 267 IKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLH 311
           I   ++ +   +    +      ++  LQ+   I N   + + + 
Sbjct: 293 IMLLNSGAEGSLELTAD------EKKALQKVSAITNLEGITKAIK 331


>gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326197615|gb|EGD54803.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 790

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 1/136 (0%)

Query: 152 DLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIIC 211
            L+E         ++ E   +++   GG    S + L +L +   ++  +T      ++ 
Sbjct: 184 GLLEGICAKEHVVVAPEVYPLVIRAGGGSPRDSLSILDQLLAGAGDEG-VTYDRALSLLG 242

Query: 212 DTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECS 271
            T    I+  ++A   G       + +  + +           L +F+ L  +  + + +
Sbjct: 243 VTDSALIDAAVDALGAGDGSALFNVVERVVDAGHDPRRFAIDLLDRFRDLILVQAVPDAT 302

Query: 272 NISFEKIIQKTEKNII 287
                +       ++ 
Sbjct: 303 ERGLVEAPDDQLASMH 318


>gi|167856184|ref|ZP_02478922.1| glycogen phosphorylase [Haemophilus parasuis 29755]
 gi|167852706|gb|EDS23982.1| glycogen phosphorylase [Haemophilus parasuis 29755]
          Length = 837

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           E + I+ +    S+E+    T K        ++ E+L  W   +V   L +    I  
Sbjct: 332 ELMRILIDEKGYSWEQAWNTTRKVFFYTNHTLMSEALETWPVEMVARILPRHLQIIFE 389


>gi|58267114|ref|XP_570713.1| structural constituent of nuclear pore [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226947|gb|AAW43406.1| structural constituent of nuclear pore, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 2076

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)

Query: 164  SISKEAKQILLANLGGDR-----------IASRNELQKLSSYCLEDILITEQHVKDIICD 212
             +  EA+ +L    G +R           +A+ NEL K+    L    ITE H + I+ D
Sbjct: 1391 GVDAEAEYVLRRLGGKNRETDVAIAKGNFLAAWNELLKVGLTLLFARHITEDHQEAILFD 1450

Query: 213  THVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSN 272
                 + E + A + G+I  A  + D    S +     L G LQKF+ +    +  E   
Sbjct: 1451 -----LLEGLLARLDGEIDLAPGVEDLLCESSLVVMTTLVGVLQKFEGVN---LPVEQLG 1502

Query: 273  ISFEKIIQKTEKN 285
                K++    + 
Sbjct: 1503 AVLAKVVDAATRP 1515


>gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 607

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L         +A +++     G    + + L +L S+  E   +  +   ++       
Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +E+++ A + G    A+ LA   +     +  +L+
Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283


>gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC
           27126]
          Length = 435

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 146 NKIHLMDLIEESL-------LIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLED 198
               L +LI+ +L             I + A+  L+   GGD       L+  + +   +
Sbjct: 161 EHEALSELIDRALSDTEKGLGDRALGIKETARNALIDLSGGDARRLLTYLELAADFTGAN 220

Query: 199 ILITEQHVKDIIC------DTHVLYIEEIINA----TIQGKIYNAIMLADFFLASKMPSH 248
             IT   V+  +       D       ++I+A            A+      L     + 
Sbjct: 221 -EITVSDVEHAVGEKVASYDNKGDTFYDLISAFHKSVRGSDPDAALYWYARILDGGGDAL 279

Query: 249 ALLHGFL 255
            +    L
Sbjct: 280 YVGRRLL 286


>gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338]
          Length = 453

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 144 PDNKIHLMD--LIEESLLIGQKSISKEAKQILLANLGGD--RIASRNELQKLSSYCLEDI 199
            D+   L+   + +E  L G   +  EA+  L++  GGD  R  +  E    S+      
Sbjct: 181 EDDIRELVRRAVADERGLGGALELEPEAEAHLVSLAGGDARRALTALEAAAESAASTGSD 240

Query: 200 LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHA 249
            I    V+  +           D H   +   I +     +  A+      + +      
Sbjct: 241 KIDLTTVEATVDRAAVLYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRF 300

Query: 250 LLHGFLQK 257
           +    +  
Sbjct: 301 IARRLVVH 308


>gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 607

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L         +A +++     G    + + L +L S+  E   +  +   ++       
Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +E+++ A + G    A+ LA   +     +  +L+
Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283


>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 353

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 32/180 (17%)

Query: 108 NICNHIIIIKSNEIKKN--NTLRKIAEKFTSVL--AISCY-------------------- 143
                II+ +++ +  +  + LR+  E ++ V    + C                     
Sbjct: 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKA 191

Query: 144 PDNKIHLMDL--IEESLLIGQKSISKEAKQILLANLGGDR---IASRNELQKLSSYCLED 198
            D    +  L  I E              + +L    GD    I       K + Y  + 
Sbjct: 192 LDASNAIDRLRFISEQ---ENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDG 248

Query: 199 ILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKF 258
             IT   V+++        + EI+     G         + F+ S   + ++++   + +
Sbjct: 249 KNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHEYY 308


>gi|302537987|ref|ZP_07290329.1| predicted protein [Streptomyces sp. C]
 gi|302446882|gb|EFL18698.1| predicted protein [Streptomyces sp. C]
          Length = 423

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 19/152 (12%)

Query: 195 CLEDILITEQHV----KDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHAL 250
           C +D L+T   V       +       + +I  A + G +   +              A 
Sbjct: 213 CTDDRLLTCTDVPVDTMRAVVRASGASLNDIYLAALAGAVRTWL-----------SPGAC 261

Query: 251 LHGFLQKFQLLEKIHIIKE--CSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308
                 +     ++   ++   + +   +++   ++     +   + E  R W ++ +R 
Sbjct: 262 QQPVPVRVPFNVRLRTERQDRGNRMGHARLLLPVDEPSAGQRLERMVEQTRFWPRDQIRR 321

Query: 309 TLHKIDHRIHLARKKKYL--EKNIIFQTILYI 338
            L +  H +        L     +   T+L I
Sbjct: 322 ILDRAPHHMLWQHIAPSLSPGDALASATLLGI 353


>gi|294054461|ref|YP_003548119.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613794|gb|ADE53949.1| DNA polymerase III, subunits gamma and tau [Coraliomargarita
           akajimensis DSM 45221]
          Length = 376

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE 219
                +   A + +     G    S++ L ++ S+C     I E  V D+        I 
Sbjct: 195 AEGIQVEDAALESIARLANGGMRDSQSILDQMISFCGN--EINEGDVLDVYGLVSAERIA 252

Query: 220 EIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
            +  A         + + D F         +L       +
Sbjct: 253 GLAKALGSLDYPAILEMVDRFANEGRDLFRVLLDLQAHIR 292


>gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON]
          Length = 444

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 35/253 (13%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEI-NSTSLFSK 82
            IFYG   G          + I+ T    F  +      +  ++    +E      ++ +
Sbjct: 55  VIFYGP-PGTGK---TTLARVIANTTKSHFEQLSAVTAGV-ADVRRLIDEAKQRLGMYGQ 109

Query: 83  KKIILIE-----NLSTEKKVLDCLEE----IIIKNICNHIIIIKSNEIKKNNTLRKIAEK 133
           + I+ I+     N + +  +L  +E     +I     N    + S  + ++        K
Sbjct: 110 RTILFIDEIHRFNKAQQDALLPHVEAGTIILIGATTENPYFEVNSALLSRSTVFELYPLK 169

Query: 134 FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS 193
              +  I      K  L D  +  L      I+ +A   ++    GD  +  N L+    
Sbjct: 170 EKHLKEIL-----KRALADK-DRGLGNYAIEITDDAIDHIVNMADGDARSVLNALEIAFL 223

Query: 194 YCLEDI----LITEQHVKDII----------CDTHVLYIEEIINATIQGKIYNAIMLADF 239
                      I     ++ I           D H   I   I +        A+     
Sbjct: 224 TTPPSDDGIIHIDLGVAEECIQRRALRYDKAGDNHYDTISAFIKSMRGSDPNAAVYWLAK 283

Query: 240 FLASKMPSHALLH 252
            + +      +  
Sbjct: 284 MINAGEDPKFIAR 296


>gi|207742531|ref|YP_002258923.1| hypothetical protein RSIPO_00719 [Ralstonia solanacearum IPO1609]
 gi|206593923|emb|CAQ60850.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 445

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182
            +R  A       A+     +   L  L +E    +     +I ++A   L  +LG D  
Sbjct: 324 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 383

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213
            +R E+ +L S           H+   +  +
Sbjct: 384 QARREVLRLISMLAPQSSFVATHLSQALGHS 414


>gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM
           14863]
 gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 438

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 158 LLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYC----LEDILITEQHVKDII--- 210
           L     +++ EA + L+   GGD  A+ N L+               +T +  ++ +   
Sbjct: 188 LGNYNATVTPEAMEHLVRMAGGDARAALNALELAVLLTQPDEQGRRTVTLETAEEALLKR 247

Query: 211 -------CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
                   D H      +I +        A+      L +      +    
Sbjct: 248 AVVYDHDGDEHYHVASALIKSIRGSDPDAALYWLARMLYAGEDPRFIARRL 298


>gi|83749070|ref|ZP_00946076.1| Hypothetical Protein RRSL_01467 [Ralstonia solanacearum UW551]
 gi|83724260|gb|EAP71432.1| Hypothetical Protein RRSL_01467 [Ralstonia solanacearum UW551]
          Length = 441

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 126 TLRKIAEKFTSVLAISCYPDNKIHLMDLIEES---LLIGQKSISKEAKQILLANLGGDRI 182
            +R  A       A+     +   L  L +E    +     +I ++A   L  +LG D  
Sbjct: 320 GIRLAAHDHLFCAAVYANEWDADALSSLDDERAPDVQARYDAIDQDALLALADHLGYDAA 379

Query: 183 ASRNELQKLSSYCLEDILITEQHVKDIICDT 213
            +R E+ +L S           H+   +  +
Sbjct: 380 QARREVLRLISMLAPQSSFVATHLSQALGHS 410


>gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 607

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 157 SLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVL 216
            L         +A +++     G    + + L +L S+  E   +  +   ++       
Sbjct: 190 ILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSF--EKSSVRYEDALEVTGFAAQE 247

Query: 217 YIEEIINATIQGKIYNAIMLADFFLASKMPSHALLH 252
            +E+++ A + G    A+ LA   +     +  +L+
Sbjct: 248 QVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILN 283


>gi|219870872|ref|YP_002475247.1| glycogen phosphorylase [Haemophilus parasuis SH0165]
 gi|219691076|gb|ACL32299.1| glycogen phosphorylase [Haemophilus parasuis SH0165]
          Length = 837

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 262 EKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319
           E + I+ +    S+E+    T K        ++ E+L  W   +V   L +    I  
Sbjct: 332 ELMRILIDEKGYSWEQAWNTTRKVFFYTNHTLMSEALETWPVEMVARILPRHLQIIFE 389


>gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 483

 Score = 35.7 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 81/234 (34%), Gaps = 22/234 (9%)

Query: 24  FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW---NEINSTSLF 80
            + YG        L      +        F ++ LNA + +              S S+ 
Sbjct: 42  ILLYGPPGVGKTTLAYALANDYG------FDVIELNASDRRSREEIRRIIGQSAVSKSIL 95

Query: 81  SKKKIILIE--NLSTEKKVLDCLEEIII-KNICNHIIIIKSNEIKKNNTLRKIAEKFTSV 137
             + II+++  +  + K+    + E+I       + II+ +N+   +  L+ +      V
Sbjct: 96  GNRFIIVLDEVDGISGKEDAGGVGELIKIAKESKNPIIMTAND-AYSPNLKNLL---PHV 151

Query: 138 LAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197
             I   P     +  +++         +  +  +++ ++  GD  ++ N+LQ L+     
Sbjct: 152 ELIELKPLKVNEIYKILKAIAEKEGLDVDDKVLKVIASHSAGDLRSAINDLQALAL---- 207

Query: 198 DILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALL 251
              +T + V+ +        I + +   +  K  N  +     +        ++
Sbjct: 208 SGDLTIEAVESLPERNREKNIFDALRIIL--KTTNYKVATTALIDVDETPDVII 259


>gi|195977810|ref|YP_002123054.1| DNA polymerase III subunits gamma and tau [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974515|gb|ACG62041.1| DNA polymerase III gamma/tau subunit DnaX [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 558

 Score = 35.7 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 62/185 (33%), Gaps = 16/185 (8%)

Query: 96  KVLDCLEEIIIKNICNHIIIIKSNEIKK-----NNTLRKIAEKFTSVLAISCYPDNKIHL 150
              + L + + +   N + I+ + E+ K      + +++   K     AI C      HL
Sbjct: 133 GAFNALLKTLEEPSDNVVFILATTELHKIPATILSRVQRFEFKAIKQAAI-C-----EHL 186

Query: 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDII 210
             +++        +   EA  ++     G    + + L + +     D  +T    ++I 
Sbjct: 187 AAILD----KEGIAYETEALHLIARRAEGGMRDALSILDQ-ALSLSFDNRVTLAIAEEIT 241

Query: 211 CDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKEC 270
               +  +++ +   I+ K   A+   +    S           L  F+ L  +    + 
Sbjct: 242 GSISISALDDYVQHLIRQKTSQALANLETIYDSGKSMSRFATDLLTYFRDLLIVKSGGDH 301

Query: 271 SNISF 275
              S 
Sbjct: 302 HRQSP 306


>gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
           89/1591]
 gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
           89/1591]
          Length = 555

 Score = 35.7 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 1/111 (0%)

Query: 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKD 208
            + + +   L        ++A  I+     G    + + L + +    +D  +T +  ++
Sbjct: 181 DIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQ-ALSLSQDQQVTLEIAEE 239

Query: 209 IICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259
           I     +  +++ + +  QG    A+                    L   +
Sbjct: 240 ITGSISLRALDDYVASLRQGDSVTALQHLQTLFGQGKSMSRFATDLLHYLR 290


>gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
           33269]
 gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
           33269]
          Length = 597

 Score = 35.7 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 107/306 (34%), Gaps = 36/306 (11%)

Query: 53  FSLVVLNALEIQ--KNISTFWNEINSTSLFSKKKIILIENLS-TEKKVLDCLEEIIIKNI 109
           +++  L+A      +NI     +        K K+ +I+ +        +   + + +  
Sbjct: 90  YNIFELDAASNNSVENIKALMEQTRIPPQVGKYKVFIIDEVHMLSTSAFNAFLKTLEEPP 149

Query: 110 CNHIIIIKSNEIKKNNTLRKIAEKFTSVLAI----SCYPDNKIHLMDLIEE---SLLIGQ 162
            + I I+               EK   +  I      Y   ++ +  +++          
Sbjct: 150 AHVIFIL------------ATTEKHKILPTIISRCQIYDFERMSVQGIVDHLKMVADKEG 197

Query: 163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEII 222
            +   +A  I+     G    + +   + +S+C     IT + V + +          I+
Sbjct: 198 ITYEDQALSIIAEKADGGMRDALSIFDQAASFC--QGNITYKKVIEDLNVLDAENYFNIV 255

Query: 223 NATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKT 282
           + ++Q K+   ++L +  ++       L++G     + +    + K+   +   ++ ++ 
Sbjct: 256 DLSLQNKVAEIMVLLNSIISKGFDGGHLINGLAAHIRNVL---MAKDEQTLPLLEVSRQ- 311

Query: 283 EKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342
                  +    +++++      +   L  ++      R+    ++ ++  T++ +AQ  
Sbjct: 312 ------QRDKFREQAVKA-PTAFLYNALKILNQCDINYRQSSN-KRLLVELTLIQVAQLT 363

Query: 343 CKNNNF 348
              ++ 
Sbjct: 364 QSEDDA 369


>gi|154250711|ref|YP_001411535.1| DNA polymerase III subunits gamma and tau [Parvibaculum
           lavamentivorans DS-1]
 gi|154154661|gb|ABS61878.1| DNA polymerase III, subunits gamma and tau [Parvibaculum
           lavamentivorans DS-1]
          Length = 623

 Score = 35.7 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 32/89 (35%)

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
              +  + E  V+D++       + ++ +  ++G I  A+               +L   
Sbjct: 275 SHGENGVLESDVRDMLGLADRARVFDLFDLLMKGDIGGALTELRAQYDVGADPVVVLSDL 334

Query: 255 LQKFQLLEKIHIIKECSNISFEKIIQKTE 283
            +    L ++ +++  S+       ++T 
Sbjct: 335 AELTHWLTRLKLVEGASDDVAMSETERTR 363


>gi|329937414|ref|ZP_08286972.1| hypothetical protein SGM_2464 [Streptomyces griseoaurantiacus M045]
 gi|329303290|gb|EGG47177.1| hypothetical protein SGM_2464 [Streptomyces griseoaurantiacus M045]
          Length = 171

 Score = 35.7 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 194 YCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPS-HALLH 252
           +  E+  +    V++    T    + +  ++ + G +       D +LAS       +  
Sbjct: 74  FRGEERTLLLVDVREEPGRTFRAAVPDAFDSAL-GNLAIDNQTFDDYLASGSLGEDGVYR 132

Query: 253 GFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285
              +  Q L  +    +         ++     
Sbjct: 133 LHERHRQALAALRGAADPQGAPAFASVRGRVPG 165


>gi|148258531|ref|YP_001243116.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
           BTAi1]
 gi|146410704|gb|ABQ39210.1| Putative DNA polymerase III (gamma and tau subunits)
           [Bradyrhizobium sp. BTAi1]
          Length = 613

 Score = 35.7 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 2/138 (1%)

Query: 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205
               LM  +         +I  EA  I+     G    S + L +          +    
Sbjct: 203 EADVLMKHLAGIATKEGVTIEPEALGIIARAAEGSVRDSLSLLDQAI--AHSAGEVRADD 260

Query: 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIH 265
           V+ ++       + ++ +    G I  A                +L    +    + ++ 
Sbjct: 261 VRQMLGLADRTRVIDLFHHLASGDIAAAFKEFREQYDVGADPVVVLSDLAEFVNFVTRVK 320

Query: 266 IIKECSNISFEKIIQKTE 283
           ++   ++       ++  
Sbjct: 321 VVPATADNVAFSETERLR 338


>gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1]
 gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1]
          Length = 395

 Score = 35.7 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 147 KIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHV 206
              L+ L++++L         +AK+ L+A+ GGD   +R  L+ L      D  IT   +
Sbjct: 151 NEALLSLLDKALKYADLDCETDAKEYLIASSGGD---ARAMLKLLEFASSIDTTITMHLL 207

Query: 207 KDIICDTHVLYIEEI----------INATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
           K +  +       E           I +        AI      +     +  +    
Sbjct: 208 KSLRPNALSAGSSEAGVHYDLASALIKSIRGSDADAAIYYLARLIDGGESADFIARRL 265


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.143    0.376 

Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,738,231,660
Number of Sequences: 14124377
Number of extensions: 214260780
Number of successful extensions: 804825
Number of sequences better than 10.0: 3520
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 2431
Number of HSP's that attempted gapping in prelim test: 799622
Number of HSP's gapped (non-prelim): 4605
length of query: 352
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 212
effective length of database: 2,865,380,850
effective search space: 607460740200
effective search space used: 607460740200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 82 (36.1 bits)