RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)



>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 202

 Score = 26.6 bits (58), Expect = 2.9
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254
            L ++   E H ++         I E     ++G+I N+I +A          HA+  GF
Sbjct: 124 GLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAV-----HAVTTGF 178

Query: 255 LQ 256
            Q
Sbjct: 179 AQ 180


>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
          diamonback rattlesnake (Crotalus atrox), atrolysin C
          [TaxId: 8730]}
          Length = 200

 Score = 26.3 bits (57), Expect = 3.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66
          +   H VF+ Y SD   I   +++    I+  Y      V L  LEI  N
Sbjct: 10 VVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSN 59


>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast
           (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]}
          Length = 483

 Score = 26.3 bits (57), Expect = 4.1
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 10/120 (8%)

Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM---PSH 248
           S+   E    + Q  ++I+        E     T          L D + +  M      
Sbjct: 257 SASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDI 316

Query: 249 ALLHGFLQKFQLLEKIHIIK-------ECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301
           + +  F     +++ +H+         EC+N    K+     K  I +   +L+  + I 
Sbjct: 317 SFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIV 376


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 25.8 bits (56), Expect = 5.5
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317
             + E + ++ +   + ++K  + T K        +L E+L  W  +L+   L +    I
Sbjct: 333 LAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQII 392

Query: 318 HL 319
           + 
Sbjct: 393 YE 394


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 25.9 bits (56), Expect = 5.6
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 16/144 (11%)

Query: 72  NEINSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126
           + +       + K+ LI+     +  +   +L  LEE          ++  ++  K   T
Sbjct: 105 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK---FLLATTDPQKLPVT 161

Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186
           +     +F           +   +   +E  L     +    A Q+L     G    + +
Sbjct: 162 ILSRCLQFH------LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 215

Query: 187 ELQKLSSYCLEDILITEQHVKDII 210
              +  +    D  ++ Q V  ++
Sbjct: 216 LTDQAIASG--DGQVSTQAVSAML 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,300,985
Number of extensions: 62983
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 21
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)