BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA Sbjct: 1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA 60 Query: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE Sbjct: 61 LEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 Query: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD Sbjct: 121 IKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGD 180 Query: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF Sbjct: 181 RIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 Query: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI Sbjct: 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 Query: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT Sbjct: 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKNNNFYKRT 352 >gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 154 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI 165 I S N +R +FTS+ ++ PD ++D I + LI KS+ Sbjct: 30 IPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79 >gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62] Length = 177 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 20/96 (20%) Query: 71 WNEINSTSLFSKKKIILIE------------NLSTEKKVLDCL-----EEIIIKNICNHI 113 W ++N+ LF+ K++ L L +K+ D L EE+ ++ + Sbjct: 28 WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAF 87 Query: 114 II---IKSNEIKKNNTLRKIAEKFTSVLAISCYPDN 146 ++ K EIK L + +FT + + Y DN Sbjct: 88 VMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123 >gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 307 RETLHKIDHRIHLARKKKYLEKNIIFQ 333 R T+ ++ + LA YLE+N+ F+ Sbjct: 126 RSTIKQLSAKAQLALTFSYLEENLFFR 152 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 251 LHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ 295 + FL+K L E II N + E+ QK E ++N+L+ Sbjct: 600 MESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLK 644 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.137 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,709 Number of Sequences: 1233 Number of extensions: 10054 Number of successful extensions: 36 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 11 length of query: 352 length of database: 328,796 effective HSP length: 75 effective length of query: 277 effective length of database: 236,321 effective search space: 65460917 effective search space used: 65460917 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)