HHsearch alignment for GI: 254780805 and conserved domain: PRK12523

>PRK12523 RNA polymerase sigma factor; Reviewed.
Probab=91.30  E-value=0.81  Score=25.23  Aligned_cols=39  Identities=23%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
T Consensus       119 ~Lp~~~R~v~~--L~~~eGls~~EIA~~LgiS~~tVk~~l~  157 (172)
T PRK12523        119 KLSSKARAAFL--YNRLDGMGHAEIAERLGVSVSRVRQYLA  157 (172)
T ss_pred             CCCHHHHHHHH--HHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             49999999999--9999399999999998939999999999