HHsearch alignment for GI: 254780805 and conserved domain: PRK12523
>PRK12523 RNA polymerase sigma factor; Reviewed.
Probab=91.30 E-value=0.81 Score=25.23 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
T Consensus 119 ~Lp~~~R~v~~--L~~~eGls~~EIA~~LgiS~~tVk~~l~ 157 (172)
T PRK12523 119 KLSSKARAAFL--YNRLDGMGHAEIAERLGVSVSRVRQYLA 157 (172)
T ss_pred CCCHHHHHHHH--HHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 49999999999--9999399999999998939999999999