HHsearch alignment for GI: 254780805 and conserved domain: PRK12525
>PRK12525 RNA polymerase sigma factor; Provisional.
Probab=92.60 E-value=0.69 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210111046799997433787786565
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
T Consensus 129 L~~~eGlsy~EIAe~LgIS~~tV~~~l~ 156 (168)
T PRK12525 129 MSQLEGLTYVEIGERLGVSLSRIHQYMV 156 (168)
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999299999999998979999999999