HHsearch alignment for GI: 254780805 and conserved domain: PRK12525

>PRK12525 RNA polymerase sigma factor; Provisional.
Probab=92.60  E-value=0.69  Score=25.68  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
T Consensus       129 L~~~eGlsy~EIAe~LgIS~~tV~~~l~  156 (168)
T PRK12525        129 MSQLEGLTYVEIGERLGVSLSRIHQYMV  156 (168)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999299999999998979999999999