HHsearch alignment for GI: 254780805 and conserved domain: PRK12528
>PRK12528 RNA polymerase sigma factor; Provisional.
Probab=91.48 E-value=0.89 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210111046799997433787786565
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
T Consensus 130 L~r~~gls~~EIA~~LgiS~~tVk~~l~ 157 (167)
T PRK12528 130 LAQVDGLGYGEIATELGISLATVKRYLN 157 (167)
T ss_pred HHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9998298999999997979999999999