HHsearch alignment for GI: 254780805 and conserved domain: PRK12529

>PRK12529 RNA polymerase sigma factor; Provisional.

Probab=93.31  E-value=0.32  Score=27.87  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
T Consensus       138 L~r~eGls~~EIAe~LgiS~~tV~~~l~  165 (178)
T PRK12529        138 MATLDGMKQKDIAQALDIALPTVKKYIH  165 (178)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9988299999999998959999999999