HHsearch alignment for GI: 254780805 and conserved domain: pfam01381
>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.
Probab=90.64 E-value=0.17 Score=29.59 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=26.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985210111046799997433787786565654
Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
T Consensus 2 r~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~ 34 (55)
T pfam01381 2 KELREELGLSQEELAEKLGVSRSTISKIENGKR 34 (55)
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 898978299899999998969999999987999