HHsearch alignment for GI: 254780805 and conserved domain: pfam01381

>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.
Probab=90.64  E-value=0.17  Score=29.59  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=26.8

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210111046799997433787786565654
Q gi|254780805|r  145 EQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
T Consensus         2 r~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~   34 (55)
T pfam01381         2 KELREELGLSQEELAEKLGVSRSTISKIENGKR   34 (55)
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             898978299899999998969999999987999