HHsearch alignment for GI: 254780805 and conserved domain: pfam08535

>pfam08535 KorB KorB domain. This family consists of several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon. This domain includes the DNA-binding HTH motif.

Probab=98.23  E-value=4.7e-06  Score=58.88  Aligned_cols=48  Identities=33%  Similarity=0.475  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             11104679999743378778656565435899998764210167777764
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLV  200 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll  200 (300)
T Consensus         2 ~G~kk~~IAk~LGks~s~VS~hlaL~d~Pd~l~~l~~~g~~~d--v~~l~   49 (93)
T pfam08535         2 KGVKQAEIAKKLGKSKSFVSQHLALLDMPDCIREAYDSGRCSD--IRALY   49 (93)
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCC--HHHHH
T ss_conf             9877999999978898899999998348699999987477687--99999