HHSEARCH alignment of GI: 254780805 and SCOP domain: d1hlva1

Alignment
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.72  E-value=0.1  Score=28.14  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|..|+.-|.-..++++-+--..+|.+||+.+|.++++|++.|+
T Consensus         4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlK   47 (66)
T d1hlva1           4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK   47 (66)
T ss_dssp             SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             32337799999999999808721099999995997647999998


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]