HHSEARCH alignment of GI: 254780805 and SCOP domain: d1vz0a1

Alignment
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=99.92  E-value=1.9e-25  Score=180.60  Aligned_cols=91  Identities=45%  Similarity=0.681  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHH
Q ss_conf             221048999999985210111046799997433787786565654358999987642101677777640100--468999
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQ  210 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~  210 (300)
                      |||||+|+|.+|++|+ +||+|++++|+++|+|++||+|+|+|++||++|++++.+|+||+||||+|+++++  |..++.
T Consensus         1 EDL~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~~~l~~g~Is~ghAr~L~~l~~~~q~~~~~   79 (93)
T d1vz0a1           1 EDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLK   79 (93)
T ss_dssp             TTCCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9898999999999999-849999999999851469999999899989999999990982089999997799299999999


Q ss_pred             HHHHCCCCHHHHHH
Q ss_conf             97422247789999
Q gi|254780805|r  211 VIVSKKMSVRDTEE  224 (300)
Q Consensus       211 ~Ii~~~LSVRe~E~  224 (300)
                      +|++++||||++|.
T Consensus        80 ~ii~~~lSVR~~Ea   93 (93)
T d1vz0a1          80 EILEKGLSVRQAEA   93 (93)
T ss_dssp             HHHHTCCCHHHHCC
T ss_pred             HHHHCCCCHHHHCC
T ss_conf             99992999988656


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]