Query gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs 186 out of 3259
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 06:40:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vk1a_ d.268.1.2 (A:) Hypothe 100.0 1E-37 7.3E-42 259.4 -5.8 190 39-233 3-209 (232)
2 d1vz0a2 d.268.1.1 (A:23-115) P 99.9 3.3E-28 2.4E-32 198.3 3.3 93 39-132 1-93 (93)
3 d1vz0a1 a.4.14.1 (A:116-208) P 99.9 1.9E-25 1.4E-29 180.6 8.7 91 133-224 1-93 (93)
4 d1xw3a1 d.268.1.4 (A:28-137) S 99.8 4.3E-20 3.1E-24 146.1 5.6 92 37-131 12-110 (110)
5 d1r71a_ a.4.14.1 (A:) Transcri 99.7 9.2E-17 6.7E-21 124.7 9.5 75 124-199 3-77 (114)
6 d2o38a1 a.35.1.13 (A:28-116) H 95.1 0.01 7.6E-07 34.5 3.9 38 137-174 9-46 (89)
7 d1ic8a2 a.35.1.1 (A:87-180) He 94.8 0.021 1.6E-06 32.5 4.9 57 116-174 6-63 (94)
8 d2icta1 a.35.1.3 (A:8-94) Anti 94.4 0.015 1.1E-06 33.5 3.4 32 143-174 5-36 (87)
9 d1ijwc_ a.4.1.2 (C:) HIN recom 94.2 0.019 1.4E-06 32.7 3.6 39 134-174 5-43 (47)
10 d2a6ca1 a.35.1.13 (A:1-69) HTH 94.1 0.024 1.8E-06 32.1 3.9 36 139-174 6-41 (69)
11 d2auwa1 a.35.1.10 (A:88-154) H 93.9 0.022 1.6E-06 32.4 3.4 32 142-173 4-35 (67)
12 d1y7ya1 a.35.1.3 (A:5-73) Rest 93.8 0.031 2.3E-06 31.4 4.0 38 137-174 7-44 (69)
13 d1lmb3_ a.35.1.2 (3:) lambda C 93.1 0.035 2.5E-06 31.1 3.3 37 143-179 16-52 (87)
14 d1x57a1 a.35.1.12 (A:8-85) End 93.1 0.035 2.6E-06 31.1 3.4 38 137-174 4-41 (78)
15 d2ppxa1 a.35.1.3 (A:30-91) Unc 93.1 0.028 2E-06 31.7 2.8 31 144-174 4-34 (62)
16 d2b5aa1 a.35.1.3 (A:1-77) Regu 92.9 0.04 2.9E-06 30.7 3.4 35 140-174 11-45 (77)
17 d1b0na2 a.35.1.3 (A:1-68) SinR 92.9 0.041 3E-06 30.6 3.4 33 142-174 4-36 (68)
18 d2r1jl1 a.35.1.2 (L:3-68) P22 92.6 0.047 3.4E-06 30.3 3.3 34 141-174 5-38 (66)
19 d2croa_ a.35.1.2 (A:) cro 434 92.5 0.051 3.7E-06 30.0 3.5 34 141-174 5-38 (65)
20 d1y9qa1 a.35.1.8 (A:4-82) Prob 92.0 0.06 4.4E-06 29.6 3.4 35 140-174 9-43 (79)
21 d1r69a_ a.35.1.2 (A:) 434 C1 r 92.0 0.064 4.7E-06 29.4 3.5 34 141-174 3-36 (63)
22 d1utxa_ a.35.1.3 (A:) Putative 91.9 0.052 3.8E-06 30.0 3.0 31 144-174 6-36 (66)
23 d1hlva1 a.4.1.7 (A:1-66) DNA-b 91.7 0.1 7.3E-06 28.1 4.2 44 131-174 4-47 (66)
24 d1rp3a2 a.4.13.2 (A:164-234) S 91.2 0.32 2.3E-05 24.9 6.3 39 134-174 21-59 (71)
25 d2hwja1 d.268.1.3 (A:4-204) Hy 90.7 0.094 6.9E-06 28.3 3.3 76 37-118 4-90 (201)
26 d1sfxa_ a.4.5.50 (A:) Hypothet 89.3 0.31 2.3E-05 25.0 5.0 49 125-174 8-56 (109)
27 d1s7oa_ a.4.13.3 (A:) Hypothet 86.7 0.39 2.9E-05 24.3 4.2 38 135-174 17-54 (106)
28 d1i5za1 a.4.5.4 (A:138-206) Ca 85.0 0.5 3.7E-05 23.7 4.0 26 151-176 28-53 (69)
29 d1umqa_ a.4.1.12 (A:) Photosyn 83.7 0.54 3.9E-05 23.4 3.7 37 137-174 19-55 (60)
30 d2ofya1 a.35.1.3 (A:3-84) Puta 83.2 0.64 4.7E-05 23.0 3.9 23 152-174 25-47 (82)
31 d1a04a1 a.4.6.2 (A:150-216) Ni 82.8 0.71 5.1E-05 22.7 4.0 38 134-174 6-43 (67)
32 d1biaa1 a.4.5.1 (A:1-63) Bioti 82.6 0.56 4.1E-05 23.4 3.4 31 147-177 14-44 (63)
33 d1or7a1 a.4.13.2 (A:120-187) S 82.3 0.64 4.7E-05 23.0 3.7 38 135-174 19-56 (68)
34 d1fsea_ a.4.6.2 (A:) Germinati 81.8 0.81 5.9E-05 22.3 4.0 39 133-174 3-41 (67)
35 d2d1ha1 a.4.5.50 (A:1-109) Hyp 81.8 1.5 0.00011 20.7 5.7 41 133-174 17-58 (109)
36 d1gdta1 a.4.1.2 (A:141-183) ga 81.5 0.65 4.7E-05 22.9 3.5 31 143-174 10-40 (43)
37 d1z05a1 a.4.5.63 (A:10-80) Tra 81.2 0.93 6.7E-05 21.9 4.2 34 141-174 9-42 (71)
38 d1x2la1 a.35.1.7 (A:9-95) Home 81.2 0.85 6.2E-05 22.2 4.0 42 133-174 7-49 (87)
39 d1ku9a_ a.4.5.36 (A:) DNA-bind 81.2 1.5 0.00011 20.5 5.4 45 129-174 18-63 (151)
40 d1etxa_ a.4.1.12 (A:) FIS prot 80.6 0.79 5.8E-05 22.4 3.6 36 143-178 53-88 (89)
41 d1ntca_ a.4.1.12 (A:) DNA-bind 80.3 0.83 6E-05 22.3 3.6 41 137-178 50-90 (91)
42 d1xsva_ a.4.13.3 (A:) Hypothet 80.0 0.95 6.9E-05 21.9 3.9 38 135-174 19-56 (106)
43 d1jhfa1 a.4.5.2 (A:2-72) LexA 79.8 1.2 8.5E-05 21.3 4.3 41 143-192 13-56 (71)
44 d1yioa1 a.4.6.2 (A:131-200) Re 79.5 1 7.3E-05 21.7 3.9 39 133-174 11-49 (70)
45 d1u2wa1 a.4.5.5 (A:12-119) Cad 79.5 0.78 5.7E-05 22.4 3.3 34 144-177 37-70 (108)
46 d1r1ta_ a.4.5.5 (A:) SmtB repr 77.9 1.2 8.6E-05 21.3 3.8 33 144-177 29-61 (98)
47 d1mkma1 a.4.5.33 (A:1-75) Tran 77.7 1.5 0.00011 20.7 4.2 41 136-176 2-44 (75)
48 d1dwka1 a.35.1.4 (A:1-86) Cyan 77.5 1.2 8.8E-05 21.2 3.8 39 148-186 22-61 (86)
49 d1ft9a1 a.4.5.4 (A:134-213) CO 77.3 0.69 5.1E-05 22.7 2.5 26 151-176 29-54 (80)
50 d1l3la1 a.4.6.2 (A:170-234) Qu 76.7 1.4 9.9E-05 20.9 3.9 38 134-174 4-41 (65)
51 d2gaua1 a.4.5.4 (A:152-232) Tr 76.7 1.2 8.8E-05 21.2 3.6 35 151-194 28-62 (81)
52 d2a61a1 a.4.5.28 (A:5-143) Tra 76.6 1.8 0.00013 20.1 4.5 48 134-191 27-74 (139)
53 d3e5ua1 a.4.5.4 (A:148-227) Ch 76.5 1.3 9.3E-05 21.0 3.7 35 151-194 29-63 (80)
54 d1k78a1 a.4.1.5 (A:19-81) Pax- 76.2 1.5 0.00011 20.7 3.9 38 137-175 16-53 (63)
55 d2bgca1 a.4.5.4 (A:138-237) Li 76.1 1.2 8.7E-05 21.2 3.5 34 152-194 31-65 (100)
56 d1j5ya1 a.4.5.1 (A:3-67) Putat 75.9 1.8 0.00013 20.0 4.4 26 152-177 22-47 (65)
57 d1wh6a_ a.35.1.7 (A:) Homeobox 74.8 1.7 0.00012 20.2 4.0 42 133-174 15-57 (101)
58 d1r1ua_ a.4.5.5 (A:) Metal-sen 74.8 1.6 0.00011 20.5 3.8 29 149-177 28-56 (94)
59 d2etha1 a.4.5.28 (A:1-140) Put 74.5 1.7 0.00012 20.3 3.9 42 132-174 27-68 (140)
60 d1s7ea2 a.35.1.7 (A:6-85) Hepa 74.3 0.99 7.2E-05 21.8 2.7 41 134-174 1-42 (80)
61 d1zyba1 a.4.5.4 (A:148-220) Pr 73.3 1.1 7.7E-05 21.6 2.6 37 151-196 26-62 (73)
62 d1pdnc_ a.4.1.5 (C:) Paired pr 73.3 1.9 0.00014 19.9 3.9 38 139-177 20-57 (123)
63 d2cfxa1 a.4.5.32 (A:1-63) Tran 73.0 1.3 9.4E-05 21.0 3.0 29 146-174 13-41 (63)
64 d2nptb1 d.15.2.2 (B:42-123) Mi 72.7 2.4 0.00017 19.3 4.3 49 246-296 20-68 (82)
65 d1z6ra1 a.4.5.63 (A:12-81) Mlc 72.3 1.9 0.00014 20.0 3.7 34 141-174 8-41 (70)
66 d2csba5 a.267.1.1 (A:3-293) To 71.4 2.8 0.00021 18.8 4.5 95 75-170 74-213 (291)
67 d2zcwa1 a.4.5.4 (A:118-199) Tr 71.3 1.2 9E-05 21.1 2.6 26 151-176 28-53 (82)
68 d1ulya_ a.4.5.58 (A:) Hypothet 71.2 2.2 0.00016 19.5 3.8 29 148-176 28-56 (190)
69 d2c60a1 d.15.2.2 (A:43-122) Mi 71.1 2.4 0.00017 19.3 4.0 49 246-296 20-68 (80)
70 d1wh8a_ a.35.1.7 (A:) Homeobox 70.8 2.4 0.00017 19.3 3.9 42 133-174 25-67 (111)
71 d1nr3a_ d.236.1.1 (A:) DNA-bin 70.5 0.2 1.5E-05 26.2 -1.6 22 149-170 2-23 (122)
72 d2cyya1 a.4.5.32 (A:5-64) Puta 70.3 2.4 0.00017 19.3 3.9 30 145-174 10-39 (60)
73 d1s3ja_ a.4.5.28 (A:) Putative 70.1 3 0.00022 18.7 5.5 48 126-174 24-71 (143)
74 d1z91a1 a.4.5.28 (A:8-144) Org 70.0 2.8 0.0002 18.9 4.2 43 131-174 27-69 (137)
75 d1qpza1 a.35.1.5 (A:2-58) Puri 69.6 1.2 9E-05 21.2 2.2 33 154-186 2-35 (57)
76 d2hsga1 a.35.1.5 (A:2-58) Gluc 69.5 1.1 8E-05 21.5 2.0 34 153-186 2-36 (57)
77 d2cg4a1 a.4.5.32 (A:4-66) Regu 68.8 1.8 0.00013 20.0 3.0 31 144-174 11-41 (63)
78 d1jhga_ a.4.12.1 (A:) Trp repr 68.4 3.3 0.00024 18.4 4.4 42 147-188 53-95 (101)
79 d1g2ha_ a.4.1.12 (A:) Transcri 67.7 2.3 0.00016 19.5 3.3 41 135-177 18-58 (61)
80 d3bwga1 a.4.5.6 (A:5-82) Trans 67.0 3.3 0.00024 18.4 4.0 24 154-177 24-47 (78)
81 d3ctaa1 a.4.5.28 (A:5-89) Ta10 66.9 3.4 0.00024 18.3 4.0 27 150-176 19-45 (85)
82 d2hoea1 a.4.5.63 (A:10-71) N-a 64.9 2.4 0.00018 19.3 3.0 30 144-174 5-34 (62)
83 d1i1ga1 a.4.5.32 (A:2-61) LprA 64.8 2.9 0.00021 18.8 3.3 28 147-174 12-39 (60)
84 d1uxda_ a.35.1.5 (A:) Fructose 63.8 1.4 0.0001 20.7 1.6 34 153-186 1-38 (59)
85 d1hw1a1 a.4.5.6 (A:5-78) Fatty 63.1 4.1 0.0003 17.8 4.5 23 154-176 29-51 (74)
86 d1ttya_ a.4.13.2 (A:) Sigma70 63.0 2.6 0.00019 19.0 2.9 41 133-173 17-59 (87)
87 d1efaa1 a.35.1.5 (A:2-60) Lac 63.0 1.4 9.8E-05 20.9 1.4 34 153-186 3-37 (59)
88 d1lnwa_ a.4.5.28 (A:) MexR rep 62.8 4.2 0.0003 17.7 4.2 41 133-174 32-72 (141)
89 d2bv6a1 a.4.5.28 (A:5-140) Tra 61.7 3.4 0.00025 18.3 3.2 41 133-174 30-70 (136)
90 d2ev0a1 a.4.5.24 (A:2-62) Mang 61.6 3.9 0.00028 17.9 3.5 32 143-174 11-43 (61)
91 d2p4wa1 a.4.5.64 (A:1-194) Tra 60.4 4.4 0.00032 17.6 3.7 19 60-78 42-60 (194)
92 d1p4wa_ a.4.6.2 (A:) Transcrip 60.1 4.6 0.00033 17.5 3.7 39 133-174 21-59 (87)
93 d1lj9a_ a.4.5.28 (A:) Transcri 59.6 4.7 0.00035 17.4 4.0 44 130-174 22-65 (144)
94 d2jn6a1 a.4.1.19 (A:1-89) Unch 57.5 5.1 0.00037 17.2 4.5 39 137-175 8-46 (89)
95 d2isya1 a.4.5.24 (A:2-64) Iron 55.4 5.5 0.0004 17.0 3.7 32 143-174 13-45 (63)
96 d1ueha_ c.101.1.1 (A:) Undecap 54.3 0.29 2.1E-05 25.2 -3.3 94 90-191 11-117 (228)
97 d2iu5a1 a.4.1.9 (A:1-71) Trans 53.6 5.5 0.0004 17.0 3.2 33 142-174 13-48 (71)
98 d1ku3a_ a.4.13.2 (A:) Sigma70 53.5 5.9 0.00043 16.8 4.3 40 134-173 8-49 (61)
99 d1hsja1 a.4.5.28 (A:373-487) S 53.2 5 0.00036 17.2 2.9 43 131-174 26-70 (115)
100 d1bl0a1 a.4.1.8 (A:9-62) MarA 52.8 6 0.00043 16.8 3.3 28 152-179 19-47 (54)
101 d2csfa1 a.35.1.7 (A:8-95) DNA- 52.7 6.1 0.00045 16.7 3.4 41 135-175 10-51 (88)
102 d1v4ra1 a.4.5.6 (A:1-100) Tran 52.5 4.6 0.00033 17.5 2.7 38 140-177 14-58 (100)
103 d1d1la_ a.35.1.2 (A:) cro lamb 52.2 4.6 0.00033 17.5 2.6 28 146-175 9-36 (61)
104 d2p7vb1 a.4.13.2 (B:546-613) S 51.9 6.3 0.00046 16.6 3.9 40 134-173 5-46 (68)
105 d1p4xa2 a.4.5.28 (A:126-250) S 51.8 6.3 0.00046 16.6 3.9 41 133-174 29-71 (125)
106 d1ub9a_ a.4.5.28 (A:) Hypothet 51.1 6.5 0.00047 16.5 3.8 38 136-174 15-52 (100)
107 d1e3oc2 a.35.1.1 (C:1-75) Oct- 50.7 6.6 0.00048 16.5 3.7 34 141-174 13-52 (75)
108 d2hr3a1 a.4.5.28 (A:2-146) Pro 50.4 6.7 0.00048 16.4 4.6 44 130-174 27-71 (145)
109 d2o3fa1 a.4.1.20 (A:1-83) Puta 50.2 6.7 0.00049 16.4 5.1 62 125-187 7-73 (83)
110 d3broa1 a.4.5.28 (A:3-137) Tra 48.9 7 0.00051 16.3 5.9 46 128-174 20-67 (135)
111 d1c7na_ c.67.1.3 (A:) Cystalys 48.9 6.5 0.00047 16.5 3.0 45 249-294 338-387 (394)
112 d2fbia1 a.4.5.28 (A:5-140) Pro 48.5 7.1 0.00052 16.3 4.6 42 132-174 25-66 (136)
113 d2hs5a1 a.4.5.6 (A:25-93) Puta 47.6 7.3 0.00054 16.2 4.2 25 153-177 26-50 (69)
114 d1jgsa_ a.4.5.28 (A:) Multiple 46.7 7.6 0.00055 16.1 5.7 42 132-174 29-70 (138)
115 d1t56a1 a.4.1.9 (A:22-94) Ethr 45.8 7.8 0.00057 16.0 3.2 30 145-174 13-45 (73)
116 d1ajsa_ c.67.1.1 (A:) Aspartat 45.7 7.9 0.00057 16.0 3.3 22 274-295 385-406 (412)
117 d2id3a1 a.4.1.9 (A:13-80) Puta 45.1 8 0.00058 15.9 3.1 31 144-174 15-48 (68)
118 d1f75a_ c.101.1.1 (A:) Undecap 44.4 0.54 4E-05 23.4 -3.1 17 174-190 102-118 (229)
119 d1p4xa1 a.4.5.28 (A:1-125) Sta 44.1 8.3 0.0006 15.8 3.1 42 132-174 29-72 (125)
120 d7aata_ c.67.1.1 (A:) Aspartat 44.1 8.3 0.00061 15.8 3.5 37 254-295 362-398 (401)
121 d1xi9a_ c.67.1.1 (A:) Putative 43.6 8.4 0.00062 15.8 3.2 42 252-294 343-389 (395)
122 d2frha1 a.4.5.28 (A:102-216) P 43.5 8.5 0.00062 15.8 4.1 43 133-176 29-73 (115)
123 d3tata_ c.67.1.1 (A:) Aromatic 42.4 8.8 0.00064 15.7 3.6 21 274-294 374-394 (397)
124 d1ixca1 a.4.5.37 (A:1-89) LysR 42.3 8.8 0.00064 15.7 4.4 38 138-177 3-40 (89)
125 d1jt6a1 a.4.1.9 (A:2-72) Multi 42.3 8.7 0.00063 15.7 2.8 31 144-174 10-43 (71)
126 d1au7a2 a.35.1.1 (A:5-76) Pit- 42.0 8.9 0.00065 15.6 3.5 34 141-174 9-48 (72)
127 d2fxaa1 a.4.5.28 (A:6-167) Pro 42.0 8.9 0.00065 15.6 5.5 41 133-174 37-77 (162)
128 d2esna1 a.4.5.37 (A:3-91) Prob 41.4 9.1 0.00066 15.6 3.2 34 141-176 11-44 (89)
129 d2id6a1 a.4.1.9 (A:1-75) Trans 41.0 8.1 0.00059 15.9 2.5 30 145-174 13-45 (75)
130 d2fq4a1 a.4.1.9 (A:9-77) Trans 39.5 9.8 0.00071 15.4 3.0 30 145-174 14-46 (69)
131 d3deua1 a.4.5.28 (A:2-141) Tra 39.3 9.8 0.00072 15.3 4.3 41 133-174 27-68 (140)
132 d2o4aa1 a.35.1.7 (A:370-452) D 39.2 9.9 0.00072 15.3 3.1 36 139-174 5-41 (83)
133 d2o7ta1 a.4.1.9 (A:1-78) Trans 39.1 9.9 0.00072 15.3 3.2 29 146-174 18-49 (78)
134 d1rzsa_ a.35.1.2 (A:) cro p22 39.0 8.5 0.00062 15.7 2.3 33 147-183 6-38 (61)
135 d2gfna1 a.4.1.9 (A:4-80) Proba 38.6 10 0.00073 15.3 3.0 23 152-174 26-48 (77)
136 d1yaaa_ c.67.1.1 (A:) Aspartat 38.2 10 0.00074 15.2 3.5 21 274-294 385-405 (412)
137 d1l0oc_ a.4.13.2 (C:) SigmaF { 37.4 11 0.00077 15.2 3.6 33 144-176 21-55 (57)
138 d2fbqa1 a.4.1.9 (A:2-80) Trans 36.2 11 0.0008 15.0 3.0 29 146-174 15-46 (79)
139 d2fx0a1 a.4.1.9 (A:4-76) Hemol 36.1 11 0.0008 15.0 3.2 30 145-174 14-46 (73)
140 d2hyja1 a.4.1.9 (A:8-82) Putat 36.0 11 0.00081 15.0 2.8 29 146-174 16-47 (75)
141 d2ay1a_ c.67.1.1 (A:) Aromatic 35.8 11 0.00081 15.0 3.3 36 255-295 356-391 (394)
142 d1d5ya1 a.4.1.8 (A:3-56) Rob t 35.7 10 0.00075 15.2 2.3 23 152-174 19-41 (54)
143 d1ku2a1 a.4.13.1 (A:273-332) S 35.2 11 0.00083 14.9 2.8 35 143-177 17-55 (60)
144 d2q7wa1 c.67.1.1 (A:1-396) Asp 35.1 11 0.00083 14.9 3.3 37 253-294 357-393 (396)
145 d1j9ia_ a.6.1.5 (A:) Terminase 35.0 8.2 0.0006 15.8 1.7 26 153-179 3-28 (68)
146 d1tc3c_ a.4.1.2 (C:) Transposa 34.6 12 0.00084 14.9 2.4 38 135-174 6-43 (51)
147 d1o4sa_ c.67.1.1 (A:) Aspartat 34.5 12 0.00085 14.9 3.1 42 252-294 326-370 (375)
148 d2fd5a1 a.4.1.9 (A:1-76) Proba 34.2 10 0.00076 15.2 2.2 29 146-174 18-49 (76)
149 d1vi0a1 a.4.1.9 (A:6-77) Hypot 33.8 12 0.00087 14.8 3.1 29 146-174 12-43 (72)
150 d1j32a_ c.67.1.1 (A:) Aspartat 33.6 12 0.00088 14.8 3.1 43 251-294 336-381 (388)
151 d1r7ma2 d.95.2.1 (A:121-225) D 33.1 12 0.0009 14.7 4.9 45 246-290 48-92 (105)
152 d1sfua_ a.4.5.19 (A:) 34L {Yab 33.0 12 0.0009 14.7 3.8 22 152-173 24-45 (70)
153 d1b5pa_ c.67.1.1 (A:) Aspartat 32.5 13 0.00092 14.7 3.3 44 249-295 333-380 (382)
154 d1gdea_ c.67.1.1 (A:) Aromatic 32.3 13 0.00092 14.6 3.3 43 251-295 332-380 (388)
155 d2oi8a1 a.4.1.9 (A:8-86) Putat 32.3 13 0.00092 14.6 4.0 30 145-174 19-51 (79)
156 d3c07a1 a.4.1.9 (A:15-89) Puta 32.2 13 0.00093 14.6 3.2 29 146-174 16-47 (75)
157 d2fbha1 a.4.5.28 (A:8-144) Tra 32.1 13 0.00093 14.6 5.5 40 134-174 25-65 (137)
158 d1b9ma1 a.4.5.8 (A:-1-126) N-t 32.0 13 0.00093 14.6 3.8 28 148-176 29-56 (127)
159 d1pb6a1 a.4.1.9 (A:14-85) Hypo 31.8 13 0.00094 14.6 2.8 30 145-174 14-46 (72)
160 d1aoya_ a.4.5.3 (A:) Arginine 31.7 13 0.00094 14.6 3.8 38 141-178 11-55 (78)
161 d1sgma1 a.4.1.9 (A:5-77) Putat 31.4 10 0.00074 15.2 1.7 30 145-174 12-44 (73)
162 d1t33a1 a.4.1.9 (A:1-88) Putat 31.3 13 0.00096 14.5 3.2 30 145-174 22-53 (88)
163 d1nera_ a.35.1.2 (A:) Ner {Bac 30.9 13 0.00098 14.5 2.6 40 131-174 5-44 (74)
164 d2np5a1 a.4.1.9 (A:9-77) Trans 30.1 14 0.001 14.4 3.8 32 143-174 9-43 (69)
165 d2qale1 d.14.1.1 (E:78-158) Ri 29.7 14 0.001 14.4 5.2 66 79-164 16-81 (81)
166 d2d6ya1 a.4.1.9 (A:7-74) Putat 29.3 14 0.001 14.3 3.0 29 146-174 13-44 (68)
167 d2fbka1 a.4.5.28 (A:8-179) Tra 28.9 7.7 0.00056 16.0 0.7 41 133-174 58-101 (172)
168 d1w7la_ c.67.1.1 (A:) Kynureni 28.6 15 0.0011 14.2 3.1 24 272-295 390-414 (418)
169 d1ui5a1 a.4.1.9 (A:5-75) A-fac 28.5 15 0.0011 14.2 3.8 29 146-174 16-47 (71)
170 d2ao9a1 a.4.1.17 (A:13-132) Ph 27.9 15 0.0011 14.2 7.6 46 146-191 27-75 (120)
171 d1rp3a1 a.4.13.1 (A:87-163) Si 27.6 15 0.0011 14.1 4.2 34 143-176 15-50 (77)
172 d1b4aa1 a.4.5.3 (A:4-78) Argin 27.5 15 0.0011 14.1 4.2 35 143-177 6-46 (75)
173 d1rr7a_ a.4.1.14 (A:) Middle o 27.1 16 0.0011 14.1 4.1 23 152-174 66-88 (94)
174 d2g7la1 a.4.1.9 (A:16-83) Puta 26.9 16 0.0011 14.1 3.2 29 146-174 15-46 (68)
175 d1zk8a1 a.4.1.9 (A:6-77) Trans 26.8 16 0.0011 14.0 3.4 29 146-174 14-45 (72)
176 d1z0xa1 a.4.1.9 (A:4-71) Trans 26.8 16 0.0011 14.0 3.1 23 152-174 23-45 (68)
177 d1rkta1 a.4.1.9 (A:2-82) Hypot 26.7 16 0.0011 14.0 3.5 29 146-174 22-53 (81)
178 d2g7sa1 a.4.1.9 (A:3-76) Putat 25.7 16 0.0012 13.9 3.8 23 152-174 24-46 (74)
179 d2p5ka1 a.4.5.3 (A:2-64) Argin 24.9 17 0.0012 13.8 4.5 36 142-177 7-48 (63)
180 d1in0a2 d.58.49.1 (A:90-163) H 24.8 17 0.0012 13.8 7.1 38 261-300 28-65 (74)
181 d2b0la1 a.4.5.66 (A:167-257) G 24.6 17 0.0013 13.8 4.1 36 142-177 19-59 (91)
182 d2i10a1 a.4.1.9 (A:10-78) Puta 24.2 18 0.0013 13.7 3.9 23 152-174 20-42 (69)
183 d1v7ba1 a.4.1.9 (A:1-74) Trans 24.0 18 0.0013 13.7 3.5 31 144-174 13-46 (74)
184 d1utaa_ d.58.52.1 (A:) Cell di 24.0 18 0.0013 13.7 4.8 47 251-298 20-67 (77)
185 d1v2da_ c.67.1.1 (A:) Glutamin 23.9 18 0.0013 13.7 3.3 24 272-295 342-366 (368)
186 d1tw3a1 a.4.5.29 (A:14-98) Car 23.8 18 0.0013 13.7 3.1 29 149-177 31-59 (85)
187 d2np3a1 a.4.1.9 (A:35-99) Puta 23.7 12 0.00085 14.9 0.9 30 145-174 6-38 (65)
188 d2vkva1 a.4.1.9 (A:6-67) Tetra 22.8 19 0.0014 13.6 3.6 23 152-174 19-41 (62)
189 d2g7ga1 a.4.1.9 (A:9-73) Putat 22.1 19 0.0014 13.5 2.5 25 150-174 17-41 (65)
190 d1l8qa1 a.4.12.2 (A:290-399) C 21.7 20 0.0014 13.4 2.4 26 149-174 56-82 (110)
191 d2gb3a1 c.67.1.1 (A:4-392) AAT 21.5 20 0.0014 13.4 3.3 23 273-295 359-382 (389)
192 d1vp4a_ c.67.1.1 (A:) Putative 20.4 21 0.0015 13.2 3.5 23 273-295 384-408 (420)
No 1
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=1e-37 Score=259.42 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=161.9
Q ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 024038982357899987689889999999886310015504620--565445333575677777642100135433346
Q gi|254780805|r 39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRA--IDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV 116 (300)
Q Consensus 39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~--~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~ 116 (300)
+..+++..|.++++|||..|+++.+++|+.||+++|+++|++|++ .+++.|+||+|||||+||+.+|+++|||+|.|+
T Consensus 3 v~~ie~~~i~~~~l~P~~~~~~~~l~~L~~sI~~~G~~~ppivv~~~~~~~~y~Ii~G~~R~~Aak~lG~~~IP~iv~d~ 82 (232)
T d1vk1a_ 3 VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDY 82 (232)
T ss_dssp EECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECT
T ss_pred CEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 43355157642128898668999999999999980987898898405899877999528999999987998567899837
Q ss_pred CCHHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 4112345-----------566654310221048999999985210111046799997433787786565654358999-9
Q gi|254780805|r 117 DNKSSLE-----------IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR-E 184 (300)
Q Consensus 117 ~d~~~~~-----------~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~-~ 184 (300)
+|++... .+++||+||++|+|+|+|.+|+++. +++..++.+|+++++|+|.+++++++..++ .
T Consensus 83 ~de~~~~~~~~~~~~~~~~~~ien~~r~~l~~ieea~~~~~~~-----~~~~~~~~~gk~~~~i~~~lr~~~l~~~~l~~ 157 (232)
T d1vk1a_ 83 FDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAE-----KGEIAFALIGEKSFAIPGGLEEQKKVSKVLDE 157 (232)
T ss_dssp TSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHH-----TTSSSEEEESSSEEEECCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9778887654201301467899999987565766653035665-----78899998473088774057765508999999
Q ss_pred HHHHHHCCHHHHHHHHHCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 87642101677777640100---46899997422247789999997641022
Q gi|254780805|r 185 MIRKEEISLGHARTLVSTSD---PLSLAQVIVSKKMSVRDTEELVQEQDNKK 233 (300)
Q Consensus 185 ~l~~~~is~ghar~Ll~~~~---~~~la~~Ii~~~LSVRe~E~lVk~~~~~~ 233 (300)
+...|.++.+|++++....+ +.+++..++.+.||||++|++|++.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~lsvre~e~~vk~~~~~~ 209 (232)
T d1vk1a_ 158 MDQAKEIELVYYGLKEDAKADMEKGEIDYVFIRKAPTKEEVMELVKRGEVFS 209 (232)
T ss_dssp HHHTTSSEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBS
T ss_pred HHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 9862213187552435455678765599999864799999999998356689
No 2
>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=3.3e-28 Score=198.27 Aligned_cols=93 Identities=45% Similarity=0.833 Sum_probs=89.2
Q ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 02403898235789998768988999999988631001550462056544533357567777764210013543334641
Q gi|254780805|r 39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDN 118 (300)
Q Consensus 39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d 118 (300)
+.+||+++|.|||+|||+.|+++++++|+.||+++|++||++|++.++ +|+|++|||||+||+.+|+++|||+|++++|
T Consensus 1 I~~Ipi~~i~~~p~npR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~-~y~ii~G~rR~~A~k~lg~~~ip~~v~~~~d 79 (93)
T d1vz0a2 1 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGD-GYELVAGERRYRAALMAGLQEVPAVVKDLTD 79 (93)
T ss_dssp CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETT-EEEEEECHHHHHHHHHHTCSEEEEEECCCCH
T ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-CEEEEEEHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf 969778997359889987589999999999998377774269998299-3599962657877776699666699974998
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 12345566654310
Q gi|254780805|r 119 KSSLEIAIVENVQR 132 (300)
Q Consensus 119 ~~~~~~~l~EN~~R 132 (300)
.++..++++||+||
T Consensus 80 ~~a~~~~l~eN~~R 93 (93)
T d1vz0a2 80 REALELALVENLQR 93 (93)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999987079
No 3
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=99.92 E-value=1.9e-25 Score=180.60 Aligned_cols=91 Identities=45% Similarity=0.681 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHH
Q ss_conf 221048999999985210111046799997433787786565654358999987642101677777640100--468999
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQ 210 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~ 210 (300)
|||||+|+|.+|++|+ +||+|++++|+++|+|++||+|+|+|++||++|++++.+|+||+||||+|+++++ |..++.
T Consensus 1 EDL~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~~~l~~g~Is~ghAr~L~~l~~~~q~~~~~ 79 (93)
T d1vz0a1 1 EDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLK 79 (93)
T ss_dssp TTCCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9898999999999999-849999999999851469999999899989999999990982089999997799299999999
Q ss_pred HHHHCCCCHHHHHH
Q ss_conf 97422247789999
Q gi|254780805|r 211 VIVSKKMSVRDTEE 224 (300)
Q Consensus 211 ~Ii~~~LSVRe~E~ 224 (300)
+|++++||||++|.
T Consensus 80 ~ii~~~lSVR~~Ea 93 (93)
T d1vz0a1 80 EILEKGLSVRQAEA 93 (93)
T ss_dssp HHHHTCCCHHHHCC
T ss_pred HHHHCCCCHHHHCC
T ss_conf 99992999988656
No 4
>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=4.3e-20 Score=146.15 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=75.3
Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE-EEC----CCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 66024038982357899987689889999999886310015504-620----5654453335756777776421001354
Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLI-VRA----IDNGLYKIIAGERRFRAAKMASLSEVPV 111 (300)
Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~-Vr~----~~~g~y~ii~G~rR~rAa~~~g~~~ip~ 111 (300)
..+.+||++.|. +|+ ||. ||++.+++|++||+++|+++|++ |++ .++++|++++|||||+|++.+|+++|||
T Consensus 12 ~~i~~IPl~~I~-~p~-~r~-~d~~~i~eL~~SI~~~G~~~ppivV~~~~~~~~~~~Y~li~G~rR~~A~k~LG~~~Ipa 88 (110)
T d1xw3a1 12 AAVHNVPLSVLI-RPL-PSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPA 88 (110)
T ss_dssp EEEEEEEGGGEE-CCS-CCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECHHHCC-CCC-CCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCEEEE
T ss_conf 637894689968-999-998-89999999999998663226762698602468898489986589999999859986618
Q ss_pred CCCCCCCHHH--HHHHHHHHHH
Q ss_conf 3334641123--4556665431
Q gi|254780805|r 112 IIRNVDNKSS--LEIAIVENVQ 131 (300)
Q Consensus 112 iv~~~~d~~~--~~~~l~EN~~ 131 (300)
+|.+.++.++ +..+.+||+|
T Consensus 89 ~V~~~~~~~l~lyl~~~~~~l~ 110 (110)
T d1xw3a1 89 KLVQSTLSDLRVYLGASTPDLQ 110 (110)
T ss_dssp EEEEECHHHHHHHHGGGCCCCC
T ss_pred EEEECCHHHHHHHHHCCCCCCC
T ss_conf 9998999999998743582249
No 5
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.68 E-value=9.2e-17 Score=124.75 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 5666543102210489999999852101110467999974337877865656543589999876421016777776
Q gi|254780805|r 124 IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTL 199 (300)
Q Consensus 124 ~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~L 199 (300)
.+++||+||+||+|+|+|.+|++|++. |+|+++||+++|+|++||+++|+|++||+++++++..|.|+..++...
T Consensus 3 ~ql~EN~qR~~L~p~e~A~a~~~l~~~-g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~i~~~~a~~~ 77 (114)
T d1r71a_ 3 DQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVVNE 77 (114)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 899998840689999999999999880-998999999977729999999999679999999999499878999999
No 6
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=95.08 E-value=0.01 Score=34.45 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999999985210111046799997433787786565
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-.+.+..+++++...||||.++|+++|.++++|++..+
T Consensus 9 k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~ 46 (89)
T d2o38a1 9 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 46 (89)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999599999999999733708999984
No 7
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.82 E-value=0.021 Score=32.47 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=46.0
Q ss_pred CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64112-345566654310221048999999985210111046799997433787786565
Q gi|254780805|r 116 VDNKS-SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 116 ~~d~~-~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++.++ +..-+-+|.+-|.| |..-+.-++..+..++++|.++|+..|.|.|+||..|.
T Consensus 6 ~~~eE~~~~~~eVE~llr~d--~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~ 63 (94)
T d1ic8a2 6 LSPEEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 63 (94)
T ss_dssp CCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 58166767777999999659--99999999999998688599999998015999999982
No 8
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=94.44 E-value=0.015 Score=33.48 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985210111046799997433787786565
Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.++.++++.|+||.++|+.+|.|+++|++++.
T Consensus 5 ~lke~r~~~glsq~~LA~~lGvs~~~is~ie~ 36 (87)
T d2icta1 5 IIQESLDELNVSLREFARAMEIAPSTASRLLT 36 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf 99999998699999999997246999999998
No 9
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=94.25 E-value=0.019 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-|++ |+....++|++. |.+..+||+.+|.|++||.+++.
T Consensus 5 ~lt~-~q~~~a~~l~~~-G~s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 5 AINK-HEQEQISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp SSCH-HHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHSC
T ss_pred CCCH-HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 5999-999999999988-99799999997969999985577
No 10
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=94.07 E-value=0.024 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985210111046799997433787786565
Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+-+..++++..+.|+||+++|+.+|.++++|++..+
T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~ 41 (69)
T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 41 (69)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf 999999999999699999999998747847999976
No 11
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=93.91 E-value=0.022 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998521011104679999743378778656
Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300)
Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300)
.-|+.+....|+||.++|+.+|.|+.+|+++=
T Consensus 4 e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE 35 (67)
T d2auwa1 4 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYR 35 (67)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999959999999999599899999998
No 12
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=93.78 E-value=0.031 Score=31.41 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999999985210111046799997433787786565
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-++-+..++++....|+||+++|+.+|.|+++|+++-+
T Consensus 7 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~ 44 (69)
T d1y7ya1 7 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 44 (69)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999999999998399999998682998989999987
No 13
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=93.13 E-value=0.035 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998521011104679999743378778656565435
Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300)
Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300)
.|+....+.|+||.++|+++|.|+++|+++-+=-..|
T Consensus 16 ~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~ 52 (87)
T d1lmb3_ 16 IYEKKKNELGLSQESVADKMGMGQSGVGALFNGINAL 52 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 9999999939999999988672288899998114787
No 14
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.12 E-value=0.035 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999999985210111046799997433787786565
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.++-+..++++....|+||.++|+.+|.|+++|+++-+
T Consensus 4 ~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~ 41 (78)
T d1x57a1 4 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 41 (78)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHC
T ss_conf 48999999999998599726788718878999999980
No 15
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=93.08 E-value=0.028 Score=31.70 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=26.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++.+....|+||.++|+.+|.|+++|+++=.
T Consensus 4 ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~ 34 (62)
T d2ppxa1 4 IKIIRRALKLTQEEFSARYHIPLGTLRDWEQ 34 (62)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 8999999699999999996989999998877
No 16
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=92.94 E-value=0.04 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985210111046799997433787786565
Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+..++++....|+||+++|+.+|.|+++|+++..
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~ 45 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999999998099999999897979999999986
No 17
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=92.89 E-value=0.041 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999985210111046799997433787786565
Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..++++..+.|+||+++|+++|.|+++|+++-+
T Consensus 4 ~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~ 36 (68)
T d1b0na2 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (68)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999998299999999897979999999985
No 18
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=92.55 E-value=0.047 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985210111046799997433787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+..++++....|+||.++|+.+|.|+++++++.+
T Consensus 5 g~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~ 38 (66)
T d2r1jl1 5 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 38 (66)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999998599999999997989999999986
No 19
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=92.49 E-value=0.051 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985210111046799997433787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+..++.+..+.|+||+++|+.+|.|+++|+++.+
T Consensus 5 ~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~ 38 (65)
T d2croa_ 5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (65)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999998499999999997867949998787
No 20
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=92.01 E-value=0.06 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985210111046799997433787786565
Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+.-++.+....|+||+++|+.+|.|+++|+++.+
T Consensus 9 ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~ 43 (79)
T d1y9qa1 9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 43 (79)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999999998299999999987711648999986
No 21
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=91.99 E-value=0.064 Score=29.40 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985210111046799997433787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.-++++..+.|+||+++|+.+|.|+++|+++.+
T Consensus 3 g~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~ 36 (63)
T d1r69a_ 3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (63)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999998499699999983739999999878
No 22
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=91.94 E-value=0.052 Score=29.99 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++++..+.|+||.++|+++|.|+++++++.+
T Consensus 6 i~~lR~~~g~tq~elA~~~gis~~~is~~e~ 36 (66)
T d1utxa_ 6 LKLIREKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf 9999998599999998863557989999986
No 23
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.72 E-value=0.1 Score=28.14 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=34.9
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221048999999985210111046799997433787786565
Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.|..|+.-|.-..++++-+--..+|.+||+.+|.++++|++.|+
T Consensus 4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlK 47 (66)
T d1hlva1 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK 47 (66)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 32337799999999999808721099999995997647999998
No 24
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=91.19 E-value=0.32 Score=24.95 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.|+|-+....+.+.. .|+|.+++|+.+|.|.++|.+++.
T Consensus 21 ~L~~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~~~ 59 (71)
T d1rp3a2 21 KLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA 59 (71)
T ss_dssp TSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 799999999999986--848999999997989999999999
No 25
>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=90.72 E-value=0.094 Score=28.31 Aligned_cols=76 Identities=14% Similarity=0.029 Sum_probs=44.7
Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCHH----------HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6602403898235789998768988----------999999988631001550462056544533357567777764210
Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRNYFESE----------GLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASL 106 (300)
Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~~~~~~----------~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~ 106 (300)
..+.+|+|+.+.|- |.---+++- +=++..+-++.+ |+-|.--++|.+.+++||+++||...+|.
T Consensus 4 ~~l~~V~i~~L~PT--Q~~vG~~eV~~k~~~~~~~~~~~~~~yl~~k----~vPvV~gp~g~lylvD~HH~~ral~e~g~ 77 (201)
T d2hwja1 4 PRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGNH----IVPVVAGPKDRAYLIDHHHLVLALSKEGV 77 (201)
T ss_dssp CBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTCB----EEEEEECSTTCEEECSCHHHHHHHHHTTC
T ss_pred CCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC----CCCEEECCCCCEEEECCHHHHHHHHHCCC
T ss_conf 72588787861783--1544499999999999852999999998559----96779889998678766078889987588
Q ss_pred CCCCCCC-CCCCC
Q ss_conf 0135433-34641
Q gi|254780805|r 107 SEVPVII-RNVDN 118 (300)
Q Consensus 107 ~~ip~iv-~~~~d 118 (300)
+++++.| .|+++
T Consensus 78 ~~v~v~v~~dls~ 90 (201)
T d2hwja1 78 EHVLTSEVAKFSH 90 (201)
T ss_dssp CEEEEEEEEECTT
T ss_pred CEEEEEEEEECCC
T ss_conf 6267999752565
No 26
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=89.30 E-value=0.31 Score=24.96 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66654310221048999999985210111046799997433787786565
Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+..-+|++.| +..|..|......|+.+||+.+|.++++|++.|.
T Consensus 8 ~l~~~L~~lGlt~~e-~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~ 56 (109)
T d1sfxa_ 8 ELVKALEKLSFKPSD-VRIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHTCCCHHH-HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 999999985999999-9999998823899899999985798355999999
No 27
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=86.65 E-value=0.39 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999985210111046799997433787786565
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|+|-+.....-+.. .|+|..+||+.+|.|+++|...+.
T Consensus 17 Lp~~qR~v~~L~y~--~~ls~~EIA~~lgiS~~aV~~~l~ 54 (106)
T d1s7oa_ 17 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK 54 (106)
T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999898999--199999999998969999999999
No 28
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.00 E-value=0.5 Score=23.65 Aligned_cols=26 Identities=46% Similarity=0.707 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11104679999743378778656565
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
..+||++||..+|.||.+|++.|+-+
T Consensus 28 l~lt~~~lA~~~G~sRetvsr~L~~l 53 (69)
T d1i5za1 28 IKITRQEIGQIVGCSRETVGRILKML 53 (69)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 17899999989799799999999999
No 29
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=83.72 E-value=0.54 Score=23.44 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999999985210111046799997433787786565
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+|.. .+.+.++.+++...+.|+.+|.||+++.+.|+
T Consensus 19 ~~Er~-~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmk 55 (60)
T d1umqa_ 19 RVRWE-HIQRIYEMCDRNVSETARRLNMHRRTLQRILA 55 (60)
T ss_dssp HHHHH-HHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999-99999999668599999998988999999999
No 30
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=83.16 E-value=0.64 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++|+.++|+++|.|+++|++.-+
T Consensus 25 ~~t~~eLA~~~Gvs~~~ls~iE~ 47 (82)
T d2ofya1 25 DMSMVTVAFDAGISVETLRKIET 47 (82)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 07999999897179999999982
No 31
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=82.78 E-value=0.71 Score=22.70 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.|+|-|.-.. +++.+ |+|..+||+.+|.|..+|.++++
T Consensus 6 ~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~ 43 (67)
T d1a04a1 6 QLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK 43 (67)
T ss_dssp GSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 2799999999--99996-79989999997888889999999
No 32
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=82.58 E-value=0.56 Score=23.35 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210111046799997433787786565654
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
|.+.--+|.++||+.+|.|+++|.+.+.-|+
T Consensus 14 L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~ 44 (63)
T d1biaa1 14 LANGEFHSGEQLGETLGMSRAAINKHIQTLR 44 (63)
T ss_dssp HTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9978958799999998939999999999999
No 33
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=82.32 E-value=0.64 Score=22.95 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999985210111046799997433787786565
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|+|-+.....-+.. .|+|.++||+.+|.|.++|.+++.
T Consensus 19 Lp~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~l~ 56 (68)
T d1or7a1 19 LPEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIF 56 (68)
T ss_dssp SCHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999--098999999998949999999999
No 34
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=81.85 E-value=0.81 Score=22.33 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.-|+|-|.... +++.+ |+|..+||..+|.|.++|.++++
T Consensus 3 p~LT~rE~~vl--~l~~~-G~s~~eIA~~L~is~~TV~~~~~ 41 (67)
T d1fsea_ 3 PLLTKREREVF--ELLVQ-DKTTKEIASELFISEKTVRNHIS 41 (67)
T ss_dssp CCCCHHHHHHH--HHHTT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999999--99983-69899999998888889999999
No 35
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=81.78 E-value=1.5 Score=20.67 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22104899999998521011-1046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYG-YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+|++.+-. .+..|....| +|+.+||+.+|.++++|++.+.
T Consensus 17 ~gLs~~~~~-iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~ 58 (109)
T d2d1ha1 17 YKITDTDVA-VLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HTCCHHHHH-HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 695999999-999999769898899999998856769999999
No 36
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=81.53 E-value=0.65 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985210111046799997433787786565
Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+++|.++ |+...+||+.+|.+|++|.+.|.
T Consensus 10 ~V~~L~~~-G~gat~IAk~lgI~R~SVYR~L~ 40 (43)
T d1gdta1 10 AVLNMWQQ-GLGASHISKTMNIARSTVYKVIN 40 (43)
T ss_dssp HHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999994-89899999997987999999986
No 37
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=81.23 E-value=0.93 Score=21.94 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985210111046799997433787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+..++-+......|..+||+.+|.|+++|++.+.
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~ 42 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESELAPASITKITR 42 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999985994899999998878878999999
No 38
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.18 E-value=0.85 Score=22.17 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 22104899999998521011104679999-7433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300)
++|+..|.|..++..+..++++|.-.|+. +|+|+.+++..|+
T Consensus 7 e~ldT~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~ 49 (87)
T d1x2la1 7 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA 49 (87)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 8779999999999999994987999999998308478999984
No 39
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=81.17 E-value=1.5 Score=20.54 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102210489999999852-10111046799997433787786565
Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLI-SEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 129 N~~R~dl~p~e~A~~~~~l~-~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+.-.|++. .+..|--|. ....+|..+||+.+|.|+++|++.++
T Consensus 18 ~~~~~Gl~~~-~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~ 63 (151)
T d1ku9a_ 18 LAKIHGLNKS-VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK 63 (151)
T ss_dssp HHHHTTCCHH-HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 9998399999-999999998489892899999986777024999999
No 40
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=80.55 E-value=0.79 Score=22.38 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999852101110467999974337877865656543
Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300)
Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300)
.+...++.+++.+.+.|+.+|.||+++.+.|+=..+
T Consensus 53 ~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~gi 88 (89)
T d1etxa_ 53 LLDMVMQYTRGNATRAALMMGINRGTLRKKLKKYGM 88 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 999999992996999999989789999999998683
No 41
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=80.29 E-value=0.83 Score=22.26 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489999999852101110467999974337877865656543
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300)
.+|.. .+...++.+++.+.+.|+.+|.+|+|+.+.|+=..+
T Consensus 50 ~~E~~-lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~~gi 90 (91)
T d1ntca_ 50 ELERT-LLTTALRHTQGHKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp HHHHH-HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 99999-999999995995999999979889999999998784
No 42
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=79.95 E-value=0.95 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999985210111046799997433787786565
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|+|-+.....-+. ..|+|..+||+.+|.|+++|...+.
T Consensus 19 Lpe~QR~vl~L~~--~e~ls~~EIA~~lgiS~~aV~~~l~ 56 (106)
T d1xsva_ 19 LTNKQRNYLELFY--LEDYSLSEIADTFNVSRQAVYDNIR 56 (106)
T ss_dssp SCHHHHHHHHHHH--TSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999999--9087599999998959999999999
No 43
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=79.77 E-value=1.2 Score=21.29 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=28.3
Q ss_pred HHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99985210111--04679999743-3787786565654358999987642101
Q gi|254780805|r 143 GYEQLISEYGY--TQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEIS 192 (300)
Q Consensus 143 ~~~~l~~~~~~--t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300)
.+.....++|+ |..|||+.+|. |.++|.++|. .+...|-|.
T Consensus 13 ~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~---------~Le~kG~I~ 56 (71)
T d1jhfa1 13 LIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK---------ALARKGVIE 56 (71)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH---------HHHHTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH---------HHHHCCCEE
T ss_conf 99999998288988999997729999999999999---------999975930
No 44
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=79.49 E-value=1 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..|+|-|.-... ++.. |++..+||..+|.|..+|.++++
T Consensus 11 ~~LT~rE~~vl~--~l~~-G~s~~eIA~~l~iS~~TV~~~~~ 49 (70)
T d1yioa1 11 SSLTGREQQVLQ--LTIR-GLMNKQIAGELGIAEVTVKVHRH 49 (70)
T ss_dssp HTSCHHHHHHHH--HHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 408999999999--9982-89999999897979999999999
No 45
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=79.47 E-value=0.78 Score=22.44 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565654
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
+..|.....++..+||+.+|.|+++||..|+.|.
T Consensus 37 l~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~ 70 (108)
T d1u2wa1 37 TYALCQDEELCVCDIANILGVTIANASHHLRTLY 70 (108)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999868991499999888557257999999999
No 46
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=77.92 E-value=1.2 Score=21.27 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565654
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
+..|. ....+..+||+.+|.|+++|+..|+.|.
T Consensus 29 l~~L~-~~~~~v~ela~~l~is~stvS~HL~~L~ 61 (98)
T d1r1ta_ 29 LSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLR 61 (98)
T ss_dssp HHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998-1996799999998929889999999999
No 47
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=77.68 E-value=1.5 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 048999999985210--11104679999743378778656565
Q gi|254780805|r 136 NPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 136 ~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
+.+++|..+-..+.+ .+++..+||+.+|.+++++.++|.-|
T Consensus 2 ~sl~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL 44 (75)
T d1mkma1 2 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 44 (75)
T ss_dssp TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7899999999999857999899999999791999999999999
No 48
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=77.45 E-value=1.2 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 21011104679999743378778656-5654358999987
Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI 186 (300)
Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l 186 (300)
..+.|+|-++||+.+|.|..||+..+ .-..||++--+.|
T Consensus 22 K~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l 61 (86)
T d1dwka1 22 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV 61 (86)
T ss_dssp HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9983998999998959889999999845788999999999
No 49
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=77.28 E-value=0.69 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11104679999743378778656565
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
+.+|+++||..+|.+|.+|++.|+-+
T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l~~l 54 (80)
T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTALNSL 54 (80)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 37899999999798899999999999
No 50
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=76.73 E-value=1.4 Score=20.88 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.|+|-|.... +++.+ |+|-.+||+.+|.|..+|.++++
T Consensus 4 ~Lt~rE~~vl--~l~~~-G~s~~eIA~~l~iS~~TV~~~~~ 41 (65)
T d1l3la1 4 WLDPKEATYL--RWIAV-GKTMEEIADVEGVKYNSVRVKLR 41 (65)
T ss_dssp CCCHHHHHHH--HHHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 0489999999--99993-69888999997888999999999
No 51
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=76.70 E-value=1.2 Score=21.20 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 11104679999743378778656565435899998764210167
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300)
+.+||++||..+|.|+.+|++.|+ ++-.+|-|+..
T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~---------~l~~~glI~~~ 62 (81)
T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLS---------TFVSERMLALD 62 (81)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH---------HHHHTTSEEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC
T ss_conf 068999999997998999999999---------99989978963
No 52
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=76.62 E-value=1.8 Score=20.07 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300)
+|++. ++..+..+....+.|+.+||+.+|.++++|++.+ ..++..|-|
T Consensus 27 glt~~-q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l---------~~L~~~gli 74 (139)
T d2a61a1 27 GITPA-QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV---------KRLEADGYL 74 (139)
T ss_dssp TCCHH-HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred CCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHH---------HHHHHCCEE
T ss_conf 97999-9999999997699899999998398814426999---------999845725
No 53
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=76.50 E-value=1.3 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 11104679999743378778656565435899998764210167
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300)
+.+||++||..+|.|+.+|++.|. ++-.+|-|+.+
T Consensus 29 ~~lt~~elA~~~g~sretvsr~l~---------~l~~~glI~~~ 63 (80)
T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVLA---------SLKRENILDKK 63 (80)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEC-
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC
T ss_conf 379999999998877889999999---------99989969963
No 54
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.18 E-value=1.5 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489999999852101110467999974337877865656
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300)
|+|.=.-+-.+.++ |.+..++|++|+.|.++|++.++.
T Consensus 16 s~DLR~Riv~~~~~-G~s~r~aA~rf~VS~s~v~k~l~r 53 (63)
T d1k78a1 16 PDVVRQRIVELAHQ-GVRPCDISRQLRVSHGCVSKILGR 53 (63)
T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999995-998999999959779999999999
No 55
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=76.14 E-value=1.2 Score=21.24 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 11046799997433-78778656565435899998764210167
Q gi|254780805|r 152 GYTQNDIGSIVGKS-RSHVANILRILKLPSSVREMIRKEEISLG 194 (300)
Q Consensus 152 ~~t~~~lA~~~G~s-~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300)
.+||++||..+|.| |.+|++.|+ ++-.+|-|+..
T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~---------~L~~~GlI~~~ 65 (100)
T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIIS---------KLKQEKVIVYK 65 (100)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHH---------HHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH---------HHHHCCCEEEC
T ss_conf 669999998838744889999999---------99879788975
No 56
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=75.92 E-value=1.8 Score=20.02 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565654
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
.+|..++|+.+|.|+.||.+.+..|+
T Consensus 22 ~vs~~~La~~l~VS~~TI~rdi~~L~ 47 (65)
T d1j5ya1 22 PVSGAQLAEELSVSRQVIVQDIAYLR 47 (65)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78599999997989999999999999
No 57
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.83 E-value=1.7 Score=20.23 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 22104899999998521011104679999-7433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300)
++|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+
T Consensus 15 ~~ldT~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~ 57 (101)
T d1wh6a_ 15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 57 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 2258999999999999994976999999998108178999984
No 58
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=74.82 E-value=1.6 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10111046799997433787786565654
Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
.+..++..++++.+|.|+++||..|+.|.
T Consensus 28 ~~~~~~v~el~~~l~~s~~~vS~HL~~L~ 56 (94)
T d1r1ua_ 28 SVSEASVGHISHQLNLSQSNVSHQLKLLK 56 (94)
T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 72995699999998878778999999999
No 59
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=74.55 E-value=1.7 Score=20.32 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0221048999999985210111046799997433787786565
Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..++++.+ ...+..+....++|+.+||+.+|.|+++|++.+.
T Consensus 27 ~~~lt~~q-~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~ 68 (140)
T d2etha1 27 ISDMKTTE-LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD 68 (140)
T ss_dssp HHHSBHHH-HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 35999999-9999999986995999999998969879999999
No 60
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.33 E-value=0.99 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 2104899999998521011104679999-7433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300)
+|+..+.|..++..+..++++|.--|+. +|+|+.+++..|+
T Consensus 1 eldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~ 42 (80)
T d1s7ea2 1 EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR 42 (80)
T ss_dssp CCCSHHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 988999999999999995987999999997438078999883
No 61
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=73.27 E-value=1.1 Score=21.56 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 1110467999974337877865656543589999876421016777
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300)
..+|++++|..+|.++.+|++.|. .+-.+|-|+.++.
T Consensus 26 i~lt~~elA~~lg~sr~tvsr~l~---------~l~~~g~I~~~~~ 62 (73)
T d1zyba1 26 FKVKMDDLARCLDDTRLNISKTLN---------ELQDNGLIELHRK 62 (73)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSCEEETT
T ss_pred EECCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCC
T ss_conf 506999999897988999999999---------9998898996299
No 62
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=73.27 E-value=1.9 Score=19.90 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985210111046799997433787786565654
Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
|.=.-+-.+.+ .|++..++|++||.|+++|++.++...
T Consensus 20 dlR~rIv~~~~-~G~s~r~iA~~~~VS~~tV~k~l~r~~ 57 (123)
T d1pdnc_ 20 NIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQ 57 (123)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998-048999999998969999999999987
No 63
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=73.01 E-value=1.3 Score=21.01 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85210111046799997433787786565
Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.|......+..++|+.+|.|+++|.++++
T Consensus 13 ~L~~n~r~s~~~iA~~lgis~~tv~~Ri~ 41 (63)
T d2cfxa1 13 ELKKDSRLSMRELGRKIKLSPPSVTERVR 41 (63)
T ss_dssp HHHHCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99983999999999998968789999999
No 64
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.66 E-value=2.4 Score=19.33 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 897899999999997398799971798228999858989999999983756
Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300)
Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300)
.+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+
T Consensus 20 RPv~~~dl~~kv~~afGq~ldl~y~n~--EL~IPl~~Q~DLDkAvellDrs 68 (82)
T d2nptb1 20 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS 68 (82)
T ss_dssp SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf 884389999999998598466888567--6888625677789999987169
No 65
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.26 E-value=1.9 Score=20.00 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999985210111046799997433787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
...++-+......|..+||+.+|.|+++|++.+.
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~ 41 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH 41 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999994992899999998949999999999
No 66
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=71.36 E-value=2.8 Score=18.83 Aligned_cols=95 Identities=35% Similarity=0.449 Sum_probs=46.1
Q ss_pred CCCCCEEECC---------C----CCCCCCCCCHHHHHH-HHHHHC--CCCCCCC-CCC--CCHHHHHHHHHHHHHCCCC
Q ss_conf 0155046205---------6----544533357567777-764210--0135433-346--4112345566654310221
Q gi|254780805|r 75 IIQPLIVRAI---------D----NGLYKIIAGERRFRA-AKMASL--SEVPVII-RNV--DNKSSLEIAIVENVQRKDL 135 (300)
Q Consensus 75 ~lqPi~Vr~~---------~----~g~y~ii~G~rR~rA-a~~~g~--~~ip~iv-~~~--~d~~~~~~~l~EN~~R~dl 135 (300)
-.|.++||-. . +.+|-|+. .|-||| |+.+.+ +.+|++- +.+ ++-+-..-.+.-...|-||
T Consensus 74 ryqnvivrgvnfdervqrlstggsparyaivy-rrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdl 152 (291)
T d2csba5 74 RYQNVIVRGVNFDERVQRLSTGGSPARYAIVY-RRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDL 152 (291)
T ss_dssp SEEEEEETTEEHHHHHHTSTTCCCHHHHHHTS-TTTHHHHHHHTTCCGGGCCCCCCCCCTTCSSCHHHHHHHHHTTCTTT
T ss_pred HHHHEEEECCCHHHHHHHHCCCCCCCEEEEEE-HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHHHHHHHCCCCE
T ss_conf 35410233256799899840589864067552-35489999870888123852032201148873899999999655220
Q ss_pred CH-------HHHHHHHHHHHH------------------HCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 04-------899999998521------------------01110-4679999743378778
Q gi|254780805|r 136 NP-------LEEALGYEQLIS------------------EYGYT-QNDIGSIVGKSRSHVA 170 (300)
Q Consensus 136 ~p-------~e~A~~~~~l~~------------------~~~~t-~~~lA~~~G~s~s~V~ 170 (300)
.| -|.|--|.+|++ +.-|| ++++|.++|.|-|.|.
T Consensus 153 mpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvseve 213 (291)
T d2csba5 153 MPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE 213 (291)
T ss_dssp SCSSGGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf 3410154895550179999997079976478999999970899972899998487532313
No 67
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=71.34 E-value=1.2 Score=21.14 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11104679999743378778656565
Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
..+||+++|..+|.++.+|++.|.-+
T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L~~l 53 (82)
T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVIGEL 53 (82)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 05899999999898899999999999
No 68
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=71.20 E-value=2.2 Score=19.52 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21011104679999743378778656565
Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
+.+..+|..+||+.+|.|+++|+..|+.|
T Consensus 28 L~~~~~s~~ela~~lg~s~~~v~~hl~~L 56 (190)
T d1ulya_ 28 LRNKEMTISQLSEILGKTPQTIYHHIEKL 56 (190)
T ss_dssp HTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98199879999999891999999999999
No 69
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.08 E-value=2.4 Score=19.30 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 897899999999997398799971798228999858989999999983756
Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300)
Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300)
.+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+
T Consensus 20 RPv~~~dl~~kv~~afGq~ldl~y~n~--El~IPl~~Q~DLDkAvellDrs 68 (80)
T d2c60a1 20 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS 68 (80)
T ss_dssp SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf 884299999999998598364677567--1788525677789999987169
No 70
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.83 E-value=2.4 Score=19.31 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 22104899999998521011104679999-7433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300)
.+|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+
T Consensus 25 ~eLDT~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~ 67 (111)
T d1wh8a_ 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLS 67 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 5368999999999999985832999999998008278999983
No 71
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=70.52 E-value=0.2 Score=26.21 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1011104679999743378778
Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVA 170 (300)
Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~ 170 (300)
.+.|+||.+||+.+|-||+.|+
T Consensus 2 R~kGltQ~eIA~~LgTSraNIs 23 (122)
T d1nr3a_ 2 RERGWSQKKIARELKTTRQNVS 23 (122)
T ss_dssp CCCSCSSCSTHHHHHHCCSSSC
T ss_pred CCCCCCHHHHHHHHCCCHHHHH
T ss_conf 6256779999999776588999
No 72
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=70.28 E-value=2.4 Score=19.29 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985210111046799997433787786565
Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..|....-.+..++|+.+|.|+++|..+++
T Consensus 10 ~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~ 39 (60)
T d2cyya1 10 KILQNDGKAPLREISKITGLAESTIHERIR 39 (60)
T ss_dssp HHHHHCTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999982899999999998939999999999
No 73
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=70.11 E-value=3 Score=18.66 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6654310221048999999985210111046799997433787786565
Q gi|254780805|r 126 IVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 126 l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.+.+...++++. ++..+..+....+.|+.+||+.++.++++|++.+.
T Consensus 24 ~~~~l~~~glt~~-q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~ 71 (143)
T d1s3ja_ 24 MLESMEKQGVTPA-QLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD 71 (143)
T ss_dssp HHHHHHHTTCCHH-HHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999988697999-99999999977998999999998969889999999
No 74
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=70.05 E-value=2.8 Score=18.86 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.6
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221048999999985210111046799997433787786565
Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..-+|++- ++..+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus 27 ~~~gLt~~-q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~ 69 (137)
T d1z91a1 27 DKLNITYP-QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 69 (137)
T ss_dssp TTTCCCHH-HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred HHCCCCHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 78496999-99999998758999899999997968888979999
No 75
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.57 E-value=1.2 Score=21.16 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 0467999974337877865656-54358999987
Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRI-LKLPSSVREMI 186 (300)
Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l 186 (300)
|..++|+..|.|.++||+.|.= -..+++.++.|
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV 35 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAV 35 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 8999999989599999999779985689999999
No 76
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=69.53 E-value=1.1 Score=21.46 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 104679999743378778656565-4358999987
Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300)
Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300)
.|..++|+..|.|.++|++.|.=- ..+++..+.|
T Consensus 2 vTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV 36 (57)
T d2hsga1 2 VTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKV 36 (57)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 69999998989599999999689886798999999
No 77
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=68.83 E-value=1.8 Score=20.04 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+..|.+....+..+||+.+|.|.++|..+++
T Consensus 11 L~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~ 41 (63)
T d2cg4a1 11 LEALMGNARTAYAELAKQFGVSPETIHVRVE 41 (63)
T ss_dssp HHHHHHCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999983899999999998939999999999
No 78
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=68.39 E-value=3.3 Score=18.43 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 5210111046799997433787786565654-35899998764
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK-LPSSVREMIRK 188 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~-L~~~i~~~l~~ 188 (300)
++.+...|+.+|++.+|.|-++|++-=+-++ -++..+..|..
T Consensus 53 ~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk~~~~~~k~~L~~ 95 (101)
T d1jhga_ 53 ELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE 95 (101)
T ss_dssp HHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9990896799999996987577889999987288589999999
No 79
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=67.72 E-value=2.3 Score=19.46 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999985210111046799997433787786565654
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
+.-+|... +.+.++.+| +..+.|+.+|.|++++.+.|+=..
T Consensus 18 ~~~~Er~~-I~~aL~~~g-n~~~aA~~Lgisr~tL~rKlkk~g 58 (61)
T d1g2ha_ 18 IGFYEAQV-LKLFYAEYP-STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp CSHHHHHH-HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHH-HHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999999-999999878-999999997988999999999967
No 80
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=67.04 E-value=3.3 Score=18.43 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 046799997433787786565654
Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
+..++|+.+|.|+++|.+.|..|.
T Consensus 24 se~~La~~~~vSr~tvr~Al~~L~ 47 (78)
T d3bwga1 24 VLETLMAQFEVSKSTITKSLELLE 47 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 799999998879899999999999
No 81
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=66.87 E-value=3.4 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 011104679999743378778656565
Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
..++|+.+||+.+|.++++|++.+.-+
T Consensus 19 ~~~lt~~eLa~~l~i~~~~vs~~l~~L 45 (85)
T d3ctaa1 19 RAYLTSSKLADMLGISQQSASRIIIDL 45 (85)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999889999999887887899999999
No 82
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=64.94 E-value=2.4 Score=19.26 Aligned_cols=30 Identities=10% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985210111046799997433787786565
Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++.+. +..+|..+||+.+|.|+++|++.+.
T Consensus 5 l~~i~-~~pisr~eLa~~~gls~~TVs~~v~ 34 (62)
T d2hoea1 5 LKRIM-KSPVSRVELAEELGLTKTTVGEIAK 34 (62)
T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999-7896999999998939999999999
No 83
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=64.78 E-value=2.9 Score=18.81 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210111046799997433787786565
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|....-.|..++|+.+|.|+++|.++++
T Consensus 12 L~~n~r~s~~~lA~~~gls~~~v~~Ri~ 39 (60)
T d1i1ga1 12 LEKDARTPFTEIAKKLGISETAVRKRVK 39 (60)
T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9884999999999998929999999999
No 84
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.76 E-value=1.4 Score=20.73 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 104679999743378778656565----4358999987
Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL----KLPSSVREMI 186 (300)
Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl----~L~~~i~~~l 186 (300)
+|-.++|+..|.|.++||+.|.=- ..+++..+.|
T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV 38 (59)
T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKV 38 (59)
T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 97999999979699999999849987675799999999
No 85
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.10 E-value=4.1 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.569 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04679999743378778656565
Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
+..++|+.+|.|+++|.+.+..|
T Consensus 29 s~~eLa~~~~vSr~tvr~Al~~L 51 (74)
T d1hw1a1 29 AERELSELIGVTRTTLREVLQRL 51 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 49999999897989999999999
No 86
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=63.03 E-value=2.6 Score=19.04 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985--21011104679999743378778656
Q gi|254780805|r 133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL 173 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300)
+.|+|-|...--.+. .+...+|..+||+.+|.|+..|+..-
T Consensus 17 ~~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie 59 (87)
T d1ttya_ 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 6399999999999727789996889999999598899999999
No 87
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.00 E-value=1.4 Score=20.89 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 104679999743378778656565-4358999987
Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300)
Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300)
.|..++|+..|.|.++||+.|.=- ..+++..+.|
T Consensus 3 ~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI 37 (59)
T d1efaa1 3 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKV 37 (59)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 88999998979799999999779986799999999
No 88
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=62.78 E-value=4.2 Score=17.75 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+|++.+-. .+..+...-+.|+.++|+.+|.++++|++.+.
T Consensus 32 ~~lt~~q~~-vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 32 LDLTPPDVH-VLKLIDEQRGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp CCCCHHHHH-HHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 798999999-99999987998999999997845737999999
No 89
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=61.70 E-value=3.4 Score=18.34 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+|++.+ +..+..+...-+.|+.+||+.+|.+++++++.+.
T Consensus 30 ~glt~~q-~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~ 70 (136)
T d2bv6a1 30 YNLTYPQ-FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 70 (136)
T ss_dssp HTCCHHH-HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH
T ss_pred CCCCHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 6979999-9999999728997999999997978837999999
No 90
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=61.55 E-value=3.9 Score=17.94 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=23.0
Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999852101-11046799997433787786565
Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++..|.++. ..+..+||+.+|.|+++|++.++
T Consensus 11 ~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mik 43 (61)
T d2ev0a1 11 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 43 (61)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 999998358975099999995899515999999
No 91
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=60.43 E-value=4.4 Score=17.58 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 8899999998863100155
Q gi|254780805|r 60 SEGLEDLCQSIKSHGIIQP 78 (300)
Q Consensus 60 ~~~l~eLa~SI~~~G~lqP 78 (300)
...+..=-..+.+.|++..
T Consensus 42 ~~~v~~HL~~L~~~Glv~~ 60 (194)
T d2p4wa1 42 QKAVLEHLRILEEAGLIES 60 (194)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9899999999998897079
No 92
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=60.12 E-value=4.6 Score=17.48 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..|+|.|.... .++.. |++..+||..++.|..+|..+++
T Consensus 21 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~ 59 (87)
T d1p4wa_ 21 KRLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK 59 (87)
T ss_dssp SSCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 88999999999--99992-89999998786979999999999
No 93
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=59.56 E-value=4.7 Score=17.39 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310221048999999985210111046799997433787786565
Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
...-+|++.+ +..+..+.+.-|.|+.+||+.+|.++++|++.+.
T Consensus 22 ~~~~~lt~~q-~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~ 65 (144)
T d1lj9a_ 22 FKELSLTRGQ-YLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK 65 (144)
T ss_dssp TGGGTCTTTH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8876989999-9999999828998999999987824716999999
No 94
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=57.54 E-value=5.1 Score=17.17 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489999999852101110467999974337877865656
Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300)
Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300)
+=-...+.+..+..-|.|..++|+.+|.|.++|.+-++-
T Consensus 8 ~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~ 46 (89)
T d2jn6a1 8 EEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIK 46 (89)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999829985999999979898899999999
No 95
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=55.42 E-value=5.5 Score=16.95 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=23.0
Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999852101-11046799997433787786565
Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
++..|.++. ..+..+||+.+|.++++|+..++
T Consensus 13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvk 45 (63)
T d2isya1 13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVS 45 (63)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 999998558977099999996899443999999
No 96
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}
Probab=54.34 E-value=0.29 Score=25.23 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHHCCCC-HH
Q ss_conf 33357567777764--------21001354333464112345566----6543102210489999999852101110-46
Q gi|254780805|r 90 KIIAGERRFRAAKM--------ASLSEVPVIIRNVDNKSSLEIAI----VENVQRKDLNPLEEALGYEQLISEYGYT-QN 156 (300)
Q Consensus 90 ~ii~G~rR~rAa~~--------~g~~~ip~iv~~~~d~~~~~~~l----~EN~~R~dl~p~e~A~~~~~l~~~~~~t-~~ 156 (300)
.|.+|+|||.-.+- +|...+.-++.-..+...-.+.+ .||-.|.. ++-..+-.|+..+-.. ..
T Consensus 11 iImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~----~Ev~~Lm~l~~~~l~~~~~ 86 (228)
T d1ueha_ 11 IIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPA----QEVSALMELFVWALDSEVK 86 (228)
T ss_dssp EECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC------------------CHHHHHHHHHTHH
T ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHH
T ss_conf 964587899987799765899999999999999998769868985411454214543----0267899999999987688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999743378778656565435899998764210
Q gi|254780805|r 157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300)
Q Consensus 157 ~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300)
++ ..-|..-.+|- .+..||+.+++.+..-+-
T Consensus 87 ~~-~~~~i~i~~iG---~~~~lp~~~~~~i~~~e~ 117 (228)
T d1ueha_ 87 SL-HRHNVRLRIIG---DTSRFNSRLQERIRKSEA 117 (228)
T ss_dssp HH-HHTTCEEEEES---CCTTSCHHHHHHHHHHHH
T ss_pred HH-HHCCEEEEEEC---CCCHHHHHHHHHHHHHHH
T ss_conf 88-85357999989---863222356666666788
No 97
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=53.55 E-value=5.5 Score=16.98 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999985210111---046799997433787786565
Q gi|254780805|r 142 LGYEQLISEYGY---TQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 142 ~~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+..+|+.+.|+ |..+||++.|.|++++.++..
T Consensus 13 ~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~ 48 (71)
T d2iu5a1 13 KAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQ 48 (71)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 999999998496407799999875716458977767
No 98
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=53.52 E-value=5.9 Score=16.76 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985--21011104679999743378778656
Q gi|254780805|r 134 DLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL 173 (300)
Q Consensus 134 dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300)
.|++-|...--.+. -+...+|..++|+.+|.|+.+|+..-
T Consensus 8 ~L~~rer~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~ 49 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIE 49 (61)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 099999999999847789997789998899798899999999
No 99
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=53.18 E-value=5 Score=17.24 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=29.4
Q ss_pred HCCCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221048999999985--210111046799997433787786565
Q gi|254780805|r 131 QRKDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 131 ~R~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..-+|++-+-. .+.-+ .+..+.|+.+||+.+|.++++|++.+.
T Consensus 26 ~~~~Lt~~q~~-vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~ 70 (115)
T d1hsja1 26 KKFNLNYEEIY-ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQ 70 (115)
T ss_dssp SSCCCCHHHHH-HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHH
T ss_pred HHCCCCHHHHH-HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 45599999999-9999980689994899999997888535999999
No 100
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=52.77 E-value=6 Score=16.75 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 11046799997433787786565-65435
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR-ILKLP 179 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~ 179 (300)
.+|.+++|+.+|.|++++.+..+ ....+
T Consensus 19 ~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 19 PLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999999998939999999999999919
No 101
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.69 E-value=6.1 Score=16.67 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 104899999998521011104679999-74337877865656
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRI 175 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrL 175 (300)
+...+.|.-++..+..++++|.--|+. +|+|+.+++..|+=
T Consensus 10 ~~T~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrk 51 (88)
T d2csfa1 10 NITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRW 51 (88)
T ss_dssp CCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 149999999999999949779999999983180779999808
No 102
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=52.50 E-value=4.6 Score=17.49 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998521011------1-046799997433787786565654
Q gi|254780805|r 140 EALGYEQLISEYG------Y-TQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 140 ~A~~~~~l~~~~~------~-t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
.+..+...+.... + |..+||+.+|.|+.+|.+.+..|.
T Consensus 14 i~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~ 58 (100)
T d1v4ra1 14 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK 58 (100)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999849999939883699999998879899999999999
No 103
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=52.18 E-value=4.6 Score=17.49 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101110467999974337877865656
Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300)
Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300)
....++| |...|+.||..++.|+..+|-
T Consensus 9 dyv~~~G--QaKaA~~LGv~Q~AIsKAira 36 (61)
T d1d1la_ 9 DYAMRFG--QTKTAKDLGVYQSAINKAIHA 36 (61)
T ss_dssp HHHHHHC--HHHHHHHHTCCTHHHHHHHHT
T ss_pred HHHHHHC--HHHHHHHCCCCHHHHHHHHHC
T ss_conf 9999977--598999829648899999963
No 104
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=51.87 E-value=6.3 Score=16.59 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985-21-011104679999743378778656
Q gi|254780805|r 134 DLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL 173 (300)
Q Consensus 134 dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L 173 (300)
.|+|-|...-..+. ++ .-.+|.+++|+.+|.|+..|++.-
T Consensus 5 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie 46 (68)
T d2p7vb1 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 399999999999808899986889999999797899999999
No 105
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=51.79 E-value=6.3 Score=16.58 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985--210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+|+..+- ..+..+ .++.++++.+||+.+|.+++++++.+.
T Consensus 29 ~~Ls~~q~-~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~ 71 (125)
T d1p4xa2 29 LTLSFVEF-TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALN 71 (125)
T ss_dssp CSSCHHHH-HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 69999999-99999998037883699999997898424999999
No 106
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=51.14 E-value=6.5 Score=16.52 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 048999999985210111046799997433787786565
Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+|...+ .+..|.....+|..+||+.+|.++++|++.++
T Consensus 15 ~p~r~~-IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~ 52 (100)
T d1ub9a_ 15 NPVRLG-IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHH-HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHH-HHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHH
T ss_conf 999999-99876047990199999998625432309999
No 107
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.73 E-value=6.6 Score=16.47 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 999998521011104679999743------3787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr 174 (300)
|..|+.-.=..|+||.+++..+|. |+++|++.=+
T Consensus 13 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~ 52 (75)
T d1e3oc2 13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 52 (75)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999987884365589999999987175025889999997
No 108
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=50.40 E-value=6.7 Score=16.44 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=29.0
Q ss_pred HHCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3102210489999999852101-11046799997433787786565
Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+..++++. ++..+..|.... +.|+.+||+.+|.++++|++.+.
T Consensus 27 ~~~~glt~~-q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~ 71 (145)
T d2hr3a1 27 AQADPVQFS-QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR 71 (145)
T ss_dssp TCCCHHHHH-HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 636398999-999999999859997999999997989889999999
No 109
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=50.23 E-value=6.7 Score=16.43 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 666543102210489999999852--1-011104679999743378778656565435--89999876
Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYEQLI--S-EYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIR 187 (300)
Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~~l~--~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~ 187 (300)
.++++. ..+|+|-|+-.+-.-+- + -...|..++|+..|.|.++|.+..+-+... .+++..+.
T Consensus 7 ~~i~~~-~~~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k~~l~ 73 (83)
T d2o3fa1 7 AIIQSM-KHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVA 73 (83)
T ss_dssp HHHHHH-GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHH-HHHCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999988-8657899999999998299999883199999997989989999999958998999999999
No 110
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=48.86 E-value=7 Score=16.29 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5431022104899999998521--0111046799997433787786565
Q gi|254780805|r 128 ENVQRKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 128 EN~~R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+..-+|++.+-. .+.-+.. ..++|+.+||+.+|.++++|++.+.
T Consensus 20 ~~l~~~glt~~q~~-vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~ 67 (135)
T d3broa1 20 IFAKKYDLTGTQMT-IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 67 (135)
T ss_dssp HHHHTTTCCHHHHH-HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99988699999999-9999997079999999999998968868999999
No 111
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=48.85 E-value=6.5 Score=16.52 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCEEEEE---C-CCCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf 89999999999739879997---1-798228999858-9899999999837
Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIK---H-RNNKGQFCIKYE-TNEQLKIICSLLG 294 (300)
Q Consensus 249 ~i~~le~~L~~~lGtkV~I~---~-~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300)
+-.++.+.|-+..|.-|. . . ..+.|-+.|.|. +.+.++.-+++|.
T Consensus 338 ~~~~~~~~Ll~~~gV~v~-pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~ 387 (394)
T d1c7na_ 338 DHKAMEEFMIHKAQIFFD-EGYIFGDGGIGFERINLAAPSSVIQESLERLN 387 (394)
T ss_dssp CHHHHHHHHHHTTCCCCE-EGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 999999999986999997-42341889998799999589999999999999
No 112
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=48.51 E-value=7.1 Score=16.26 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0221048999999985210111046799997433787786565
Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+|++.+ +..+..+-...+.|+.+||+.+|.++++|++.+.
T Consensus 25 ~~glt~~q-~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~ 66 (136)
T d2fbia1 25 QHGLTEQQ-WRVIRILRQQGEMESYQLANQACILRPSMTGVLA 66 (136)
T ss_dssp HHTCCHHH-HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 84979999-9999999976998999999998878988999999
No 113
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=47.59 E-value=7.3 Score=16.16 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1046799997433787786565654
Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
++..++|+.+|.|+++|...|..|.
T Consensus 26 l~~~~La~~~~vSr~tvr~Al~~L~ 50 (69)
T d2hs5a1 26 LSEPDICAALDVSRNTVREAFQILI 50 (69)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6999999998979899999999999
No 114
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=46.68 E-value=7.6 Score=16.08 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0221048999999985210111046799997433787786565
Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.-+|++-+ +..+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus 29 ~~~Lt~~q-~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~ 70 (138)
T d1jgsa_ 29 PLDITAAQ-FKVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp TTTSCHHH-HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 86989999-9998868718098999999997878857999999
No 115
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.76 E-value=7.8 Score=15.99 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-.+||+..|.|++++.++..
T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 45 (73)
T d1t56a1 13 ENLLEDRPLADISVDDLAKGAGISRPTFYFYFP 45 (73)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999997591507799999986988889988884
No 116
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}
Probab=45.66 E-value=7.9 Score=15.98 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=13.6
Q ss_pred EEEEEEECCHHHHHHHHHHHCC
Q ss_conf 2899985898999999998375
Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLGE 295 (300)
Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~~ 295 (300)
|+|.+-.-+.++++++.+.|.+
T Consensus 385 ~Ri~~ag~~~~~i~~~a~aI~~ 406 (412)
T d1ajsa_ 385 GRINMCGLTTKNLDYVATSIHE 406 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHH
T ss_conf 8688336988889999999999
No 117
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.12 E-value=8 Score=15.92 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998521011---1046799997433787786565
Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
...++.+.| .|-.+||+..|.|++++.++..
T Consensus 15 a~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~ 48 (68)
T d2id3a1 15 AGDALAADGFDALDLGEIARRAGVGKTTVYRRWG 48 (68)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999998493407799999997868879999985
No 118
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}
Probab=44.41 E-value=0.54 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 56543589999876421
Q gi|254780805|r 174 RILKLPSSVREMIRKEE 190 (300)
Q Consensus 174 rLl~L~~~i~~~l~~~~ 190 (300)
.+-.||+.+++.+..-+
T Consensus 102 ~~~~lp~~l~~~i~~~e 118 (229)
T d1f75a_ 102 FIDDLPDHTKKAVLEAK 118 (229)
T ss_dssp CGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 22343688888899999
No 119
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=44.11 E-value=8.3 Score=15.82 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 022104899999998521--0111046799997433787786565
Q gi|254780805|r 132 RKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 132 R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+|++.+ +..+..+.. +.++|+.+||+.++.++++|++.+.
T Consensus 29 ~~~Lt~~q-~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~ 72 (125)
T d1p4xa1 29 EVDMTIKE-FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIK 72 (125)
T ss_dssp TCSSCHHH-HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHH
T ss_pred HCCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 74998899-999999998436986799999996888243999999
No 120
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}
Probab=44.09 E-value=8.3 Score=15.82 Aligned_cols=37 Identities=3% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 999999739879997179822899985898999999998375
Q gi|254780805|r 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300)
Q Consensus 254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300)
-.+|.+..|.-+ .. .++|.+-+-+.++++++.+.|.+
T Consensus 362 ~~~L~~e~gV~~----~p-g~Ris~a~~~~~~i~~la~ai~~ 398 (401)
T d7aata_ 362 VERLTKEFSIYM----TK-DGRISVAGVASSNVGYLAHAIHQ 398 (401)
T ss_dssp HHHHHHHHCEEC----CT-TCEEEGGGCCTTTHHHHHHHHHH
T ss_pred HHHHHHHCCEEE----CC-CCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999998299998----89-71798526998889999999999
No 121
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}
Probab=43.62 E-value=8.4 Score=15.78 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCEEEEEC----CCCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf 999999997398799971----798228999858-9899999999837
Q gi|254780805|r 252 DLEKKISSKVGLNISIKH----RNNKGQFCIKYE-TNEQLKIICSLLG 294 (300)
Q Consensus 252 ~le~~L~~~lGtkV~I~~----~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300)
++..++-+.-|.-|. .. ....|-+.|.|. +.++++.-+++|.
T Consensus 343 ~~~~~ll~~~gV~v~-PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~ 389 (395)
T d1xi9a_ 343 EFVLDVLHNAHVLFV-HGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE 389 (395)
T ss_dssp HHHHHHHHHHCEECE-EGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 999999996999998-47332889979799996489999999999999
No 122
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=43.51 E-value=8.5 Score=15.77 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210489999999852--1011104679999743378778656565
Q gi|254780805|r 133 KDLNPLEEALGYEQLI--SEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~--~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
-+|++.+-..- ..+. ++.++|+.+||+.++.++++|++.+.-+
T Consensus 29 ~~Ls~~q~~vL-~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~L 73 (115)
T d2frha1 29 FSISFEEFAVL-TYISENKEKEYYLKDIINHLNYKQPQVVKAVKIL 73 (115)
T ss_dssp TCCCHHHHHHH-HHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 59899999999-9998089999889999999797886899999999
No 123
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}
Probab=42.44 E-value=8.8 Score=15.66 Aligned_cols=21 Identities=10% Similarity=0.393 Sum_probs=15.0
Q ss_pred EEEEEEECCHHHHHHHHHHHC
Q ss_conf 289998589899999999837
Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300)
Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300)
++|.|.+-+.++++++.+.+.
T Consensus 374 ~Ri~~a~~~~~~i~~~~~ai~ 394 (397)
T d3tata_ 374 GRMCVAGLNTANVQRVAKAFA 394 (397)
T ss_dssp SCCBTTSCCTTTHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHH
T ss_conf 879852599889999999999
No 124
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=42.33 E-value=8.8 Score=15.65 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999985210111046799997433787786565654
Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
++.-..|..+.+ +| +-...|+.+|.|++.|++.++-++
T Consensus 3 l~~L~~f~~v~e-~g-s~~~AA~~L~isq~avs~~i~~LE 40 (89)
T d1ixca1 3 FRQLKYFIAVAE-AG-NMAAAAKRLHVSQPPITRQMQALE 40 (89)
T ss_dssp HHHHHHHHHHHH-HS-SHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HC-CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999998-09-999999985899278899999998
No 125
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=42.31 E-value=8.7 Score=15.70 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998521011---1046799997433787786565
Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
...++.+.| .|.++||+..|.|++++.++..
T Consensus 10 a~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~ 43 (71)
T d1jt6a1 10 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 43 (71)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999998591406799999987858759988884
No 126
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.02 E-value=8.9 Score=15.62 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 999998521011104679999743------3787786565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR 174 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr 174 (300)
|..|+.-.=..|+||.+++..+|. |+++|.+.=+
T Consensus 9 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~ 48 (72)
T d1au7a2 9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN 48 (72)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9999987742686299999999986186555037788885
No 127
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=42.00 E-value=8.9 Score=15.62 Aligned_cols=41 Identities=20% Similarity=-0.020 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 221048999999985210111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-+|++.+ +..+.-+...-+.|+.+||+.+|.++++|++.+.
T Consensus 37 ~~Lt~~q-~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~ 77 (162)
T d2fxaa1 37 YDLNINE-HHILWIAYQLNGASISEIAKFGVMHVSTAFNFSK 77 (162)
T ss_dssp GTCCHHH-HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 5999899-9999652118991899999997699403199899
No 128
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.41 E-value=9.1 Score=15.56 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998521011104679999743378778656565
Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
-..|..+.+. | +-...|+.+|.|+++|++.|+-+
T Consensus 11 L~~f~~v~~~-g-s~t~AA~~l~isq~avs~~l~~l 44 (89)
T d2esna1 11 LLVFDALYRH-R-NVGTAASELAISASAFSHALGRL 44 (89)
T ss_dssp HHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-C-CHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999980-9-99999998779984755999999
No 129
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=41.03 E-value=8.1 Score=15.89 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9852101---11046799997433787786565
Q gi|254780805|r 145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+. +.|..+||+..|.|++++.++..
T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~ 45 (75)
T d2id6a1 13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK 45 (75)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998393516799999884998889988887
No 130
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=39.47 E-value=9.8 Score=15.37 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=22.9
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-.+||++.|.|++++.++..
T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 46 (69)
T d2fq4a1 14 YELLLESGFKAVTVDKIAERAKVSKATIYKWWP 46 (69)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998392407799999997858879999987
No 131
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=39.27 E-value=9.8 Score=15.35 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22104899999998521-0111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
-++++.+ +..+..+.+ .-++|+.+||+.++.++++|++.++
T Consensus 27 ~glt~~~-~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~ 68 (140)
T d3deua1 27 LELTQTH-WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLD 68 (140)
T ss_dssp TTCCHHH-HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 6979999-99999998749995699999997877767889999
No 132
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.16 E-value=9.9 Score=15.34 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 99999998521011104679999-7433787786565
Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300)
Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300)
|.|.-++..+..++++|.--|+. +|+|+.+++..|+
T Consensus 5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~ 41 (83)
T d2o4aa1 5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR 41 (83)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHC
T ss_conf 9999999999994977999999998318077999981
No 133
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=39.12 E-value=9.9 Score=15.33 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+. +.|..+||++.|.|++++.++..
T Consensus 18 ~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~ 49 (78)
T d2o7ta1 18 NLYRTHHHDSLTMENIAEQAGVGVATLYRNFP 49 (78)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998491406799999883998879999886
No 134
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=39.00 E-value=8.5 Score=15.74 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5210111046799997433787786565654358999
Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR 183 (300)
Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~ 183 (300)
.+..|| +...+|+.+|.|++.|+.- -++-|+..
T Consensus 6 vi~~FG-~~~k~A~algis~~AVsqW---Ge~VPe~R 38 (61)
T d1rzsa_ 6 VIDHFG-TQRAVAKALGISDAAVSQW---KEVIPEKD 38 (61)
T ss_dssp HHHHHS-SHHHHHHHHTCCHHHHHHC---CSBCCHHH
T ss_pred HHHHHC-CHHHHHHHHCCCHHHHHHH---HCCCCHHH
T ss_conf 999957-7999999969989999988---63076989
No 135
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=38.57 E-value=10 Score=15.28 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.|..+||+..|.|++++.++..
T Consensus 26 ~~s~~~Ia~~agvs~~~lY~~F~ 48 (77)
T d2gfna1 26 AVTTRAVAEESGWSTGVLNHYFG 48 (77)
T ss_dssp GCCHHHHHHHHSSCHHHHHHHTS
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 05799999987888779988883
No 136
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}
Probab=38.23 E-value=10 Score=15.25 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=10.7
Q ss_pred EEEEEEECCHHHHHHHHHHHC
Q ss_conf 289998589899999999837
Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300)
Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300)
++|.+..-+.+.++.+.+.|.
T Consensus 385 ~Ris~~g~~~~~i~~l~~ai~ 405 (412)
T d1yaaa_ 385 GRASIAGLNQGNVEYVAKAID 405 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHH
T ss_conf 879851598888999999999
No 137
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.43 E-value=11 Score=15.17 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998521011--104679999743378778656565
Q gi|254780805|r 144 YEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 144 ~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
...|..++| -|.+|||+.+|.+...|...|.-.
T Consensus 21 ~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~l~a~ 55 (57)
T d1l0oc_ 21 KDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAV 55 (57)
T ss_dssp HHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999872999899999999793999999999983
No 138
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.20 E-value=11 Score=15.04 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=22.7
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+. +.|-.+||+..|.|++++.++..
T Consensus 15 ~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~ 46 (79)
T d2fbqa1 15 QLFAEKGFAETSLRLITSKAGVNLAAVNYHFG 46 (79)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998693504099999998828557878776
No 139
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=36.13 E-value=11 Score=15.04 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|..+||++.|.|++++.++..
T Consensus 14 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~ 46 (73)
T d2fx0a1 14 KKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 46 (73)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998693517699999987848649998884
No 140
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=36.02 E-value=11 Score=15.02 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.6
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+. +.|..+||+..|.|++++.++..
T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 47 (75)
T d2hyja1 16 EIASEEGLDGITIGRLAEELEMSKSGVHKHFG 47 (75)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99997590307699999988909899988882
No 141
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}
Probab=35.81 E-value=11 Score=15.00 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 99999739879997179822899985898999999998375
Q gi|254780805|r 255 KKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300)
Q Consensus 255 ~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300)
++|.+..|.-+ - . .|+|.|..-+.+.++++.+.|.+
T Consensus 356 ~~L~~~~~V~~--~--~-g~Ri~~a~l~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 356 KRIKEEFGIYM--V--G-DSRINIAGLNDNTIPILARAIIE 391 (394)
T ss_dssp HHHHHHHCEEC--C--T-TCEEEGGGCCTTTHHHHHHHHHH
T ss_pred HHHHHHCCEEE--C--C-CCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99999689895--6--9-87899537998889999999998
No 142
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.68 E-value=10 Score=15.24 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+|.+++|+.+|.|++++.+..+
T Consensus 19 ~itl~~lA~~~~~S~~~l~r~Fk 41 (54)
T d1d5ya1 19 PLSLDNVAAKAGYSKWHLQRMFK 41 (54)
T ss_dssp SCCCHHHHTTTSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999998929999999999
No 143
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=35.18 E-value=11 Score=14.94 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 9998521011--1046799997433--787786565654
Q gi|254780805|r 143 GYEQLISEYG--YTQNDIGSIVGKS--RSHVANILRILK 177 (300)
Q Consensus 143 ~~~~l~~~~~--~t~~~lA~~~G~s--~s~V~~~LrLl~ 177 (300)
+.++|..++| -|.+|+|+.+|.+ ...|...+++..
T Consensus 17 ~~~~l~qe~gRePt~eEiA~~l~~~l~~ekV~~~l~~~~ 55 (60)
T d1ku2a1 17 TARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ 55 (60)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHCSSCCHHHHHHHGGGSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 999999996899999999998879999999999999755
No 144
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}
Probab=35.11 E-value=11 Score=14.93 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC
Q ss_conf 999999973987999717982289998589899999999837
Q gi|254780805|r 253 LEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300)
Q Consensus 253 le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300)
.-.+|.+..|.-+ - ..|+|.+..-+.++++.+++.|.
T Consensus 357 ~~~~L~~e~gV~~--~---~g~Ri~~a~l~~~~i~~~~~ai~ 393 (396)
T d2q7wa1 357 QVLRLREEFGVYA--V---ASGRVNVAGMTPDNMAPLCEAIV 393 (396)
T ss_dssp HHHHHHHHHCEEC--C---TTCEEEGGGCCTTTHHHHHHHHH
T ss_pred HHHHHHHHCCEEE--C---CCCEEEECCCCHHHHHHHHHHHH
T ss_conf 9999999689997--7---99879952898788999999999
No 145
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=35.04 E-value=8.2 Score=15.85 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 104679999743378778656565435
Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLP 179 (300)
Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300)
.+..++|+.||.|..||.+-.+. -+|
T Consensus 3 Vnk~~lA~iFGVS~~TI~~W~~~-G~P 28 (68)
T d1j9ia_ 3 VNKKQLADIFGASIRTIQNWQEQ-GMP 28 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHC-CCC
T ss_conf 68999999969988999999988-998
No 146
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=34.62 E-value=12 Score=14.90 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999985210111046799997433787786565
Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|+--|+|.. ..+...++|..++|+.+.+||-.|.+||.
T Consensus 6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~ 43 (51)
T d1tc3c_ 6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 307899988--99999487699999999885999999956
No 147
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}
Probab=34.46 E-value=12 Score=14.87 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf 9999999973987999717--98228999858-9899999999837
Q gi|254780805|r 252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300)
Q Consensus 252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300)
++..+|-...|.-|. ... ...|-|.|.|. +.++++.-+++|+
T Consensus 326 ~~~~~ll~~~gV~v~-pG~~F~~~g~iRis~~~~~e~l~~al~rl~ 370 (375)
T d1o4sa_ 326 KFCERLLEEKKVALV-PGSAFLKPGFVRLSFATSIERLTEALDRIE 370 (375)
T ss_dssp HHHHHHHHHHCEECE-EGGGGTCTTEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEE-ECCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 999999985999999-761158999699997289999999999999
No 148
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.21 E-value=10 Score=15.17 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8521011---1046799997433787786565
Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+.| .|..+||+..|.|++++.++..
T Consensus 18 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~ 49 (76)
T d2fd5a1 18 QALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ 49 (76)
T ss_dssp HHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf 99998491305699999983899550042089
No 149
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=33.77 E-value=12 Score=14.79 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8521011---1046799997433787786565
Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+.| .|..+||+..|.|++++.++..
T Consensus 12 ~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~ 43 (72)
T d1vi0a1 12 EVIAENGYHQSQVSKIAKQAGVADGTIYLYFK 43 (72)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998590415599999987949879988883
No 150
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}
Probab=33.62 E-value=12 Score=14.78 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf 99999999973987999717--98228999858-9899999999837
Q gi|254780805|r 251 TDLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300)
Q Consensus 251 ~~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300)
.++..+|-+..|.-|. ... +..|-+.|.|. +.++|+.-+++|.
T Consensus 336 ~~~~~~ll~~~gV~v~-pG~~F~~~~~~Rls~~~~~e~l~~al~rl~ 381 (388)
T d1j32a_ 336 LDFCSELLDQHQVATV-PGAAFGADDCIRLSYATDLDTIKRGMERLE 381 (388)
T ss_dssp HHHHHHHHHHHCEECE-EGGGGTCTTBEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEE-ECCCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 9999999986999998-164359999699998389999999999999
No 151
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.10 E-value=12 Score=14.73 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHH
Q ss_conf 897899999999997398799971798228999858989999999
Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIIC 290 (300)
Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il 290 (300)
...+...+.+-|.+.||.+.+|+..+++..|.|.-.|.+.|-.++
T Consensus 48 t~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~~~s~~~~~~lI 92 (105)
T d1r7ma2 48 TFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLI 92 (105)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHHHHH
T ss_conf 999999999999987394589995498479999302789999984
No 152
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=33.03 E-value=12 Score=14.72 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1104679999743378778656
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300)
+.|..+||+.||.++..|.+.|
T Consensus 24 ~~tA~~LAk~Lg~~Kk~VNr~L 45 (70)
T d1sfua_ 24 YTTAISLSNRLKINKKKINQQL 45 (70)
T ss_dssp EECHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHH
T ss_conf 7049999999598898988999
No 153
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}
Probab=32.49 E-value=13 Score=14.66 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCEEEEE-CC--CCCEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf 89999999999739879997-17--98228999858-98999999998375
Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIK-HR--NNKGQFCIKYE-TNEQLKIICSLLGE 295 (300)
Q Consensus 249 ~i~~le~~L~~~lGtkV~I~-~~--~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300)
+-..+.+.|.+. | |-|. .. ...|-+.|.|. +.|+++.-+++|.+
T Consensus 333 ~~~~~~~~l~e~-g--V~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~ 380 (382)
T d1b5pa_ 333 DEVRAAERLLEA-G--VAVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380 (382)
T ss_dssp SHHHHHHHHHHT-T--EECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHC-C--EEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999999999978-9--79995722589996999974999999999999998
No 154
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=32.30 E-value=13 Score=14.64 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCEEEEE----C-CCCCEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf 999999999739879997----1-798228999858-98999999998375
Q gi|254780805|r 251 TDLEKKISSKVGLNISIK----H-RNNKGQFCIKYE-TNEQLKIICSLLGE 295 (300)
Q Consensus 251 ~~le~~L~~~lGtkV~I~----~-~~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300)
.++.++|-+..| |-+. . ....|-+.|.|. +.|+++.-+++|.+
T Consensus 332 ~~~~~~ll~e~g--V~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~ 380 (388)
T d1gdea_ 332 KKFSELMLKEAR--VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMER 380 (388)
T ss_dssp HHHHHHHHHHTC--EECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--EEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999999998599--9998104519899997999964999999999999999
No 155
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.29 E-value=13 Score=14.64 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.8
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-.+||+..|.|++++.++..
T Consensus 19 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 51 (79)
T d2oi8a1 19 WEQIATAGASALSLNAIAKRMGMSGPALYRYFD 51 (79)
T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCC
T ss_conf 999998690306799999986799774455169
No 156
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.19 E-value=13 Score=14.63 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8521011---1046799997433787786565
Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.++.+.| .|..+||++.|.|++++.++..
T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 47 (75)
T d3c07a1 16 RLFQERGYDRTTMRAIAQEAGVSVGNAYYYFA 47 (75)
T ss_dssp HHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99997491407799999987939879998985
No 157
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.08 E-value=13 Score=14.62 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21048999999985210-111046799997433787786565
Q gi|254780805|r 134 DLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+|++. ++..+..+... .+.|+.+||+.+|.++++|++.+.
T Consensus 25 glt~~-q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~ 65 (137)
T d2fbha1 25 GLSQA-RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 65 (137)
T ss_dssp CCTTT-HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 97999-999999998769997699999998978989999999
No 158
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=31.98 E-value=13 Score=14.61 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21011104679999743378778656565
Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
+.+.| +-...|+.+|.|+++|++.++-+
T Consensus 29 i~~~g-s~~~AA~~l~~sq~avs~~i~~l 56 (127)
T d1b9ma1 29 IALSG-SISQGAKDAGISYKSAWDAINEM 56 (127)
T ss_dssp HHHHS-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99959-95899988158762999999999
No 159
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=31.76 E-value=13 Score=14.59 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.8
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-.+||+..|.|++++.++..
T Consensus 14 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~ 46 (72)
T d1pb6a1 14 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 46 (72)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998592506799999986978679998886
No 160
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=13 Score=14.58 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCC-CHHHHHHHH---H---HHHHHHHHHHHHHHH
Q ss_conf 9999985210111-046799997---4---337877865656543
Q gi|254780805|r 141 ALGYEQLISEYGY-TQNDIGSIV---G---KSRSHVANILRILKL 178 (300)
Q Consensus 141 A~~~~~l~~~~~~-t~~~lA~~~---G---~s~s~V~~~LrLl~L 178 (300)
-.++++|+.+..+ ||++|.+.| | .++++||+-|+-+.+
T Consensus 11 l~~I~~li~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eLg~ 55 (78)
T d1aoya_ 11 VKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA 55 (78)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999998488678999999999839850109889999999298
No 161
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=31.38 E-value=10 Score=15.24 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-.+||+..|.|++++.++..
T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~ 44 (73)
T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFP 44 (73)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998492417799999986888779999859
No 162
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=31.31 E-value=13 Score=14.54 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=22.0
Q ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 985210111--046799997433787786565
Q gi|254780805|r 145 EQLISEYGY--TQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~~--t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.|+ |-.+||++.|.|++++.++..
T Consensus 22 ~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F~ 53 (88)
T d1t33a1 22 LAQFGEYGLHATTRDIAALAGQNIAAITYYFG 53 (88)
T ss_dssp HHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHCCCC
T ss_conf 99998754016799999883998443100198
No 163
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=30.86 E-value=13 Score=14.49 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=28.4
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221048999999985210111046799997433787786565
Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
...|.++-+.- ..| ..-|+|..+|++.-|.+.++++|.|.
T Consensus 5 k~~dWh~adI~---AaL-~krG~sLa~lsr~~gls~stl~naL~ 44 (74)
T d1nera_ 5 KARDWHRADVI---AGL-KKRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp CSSSCCHHHHH---HHH-TTSSCCHHHHHHHHSCCHHHHHHTTT
T ss_pred CCCCCCHHHHH---HHH-HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 56888999999---999-99688799999990998789999983
No 164
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=30.11 E-value=14 Score=14.41 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998521011---1046799997433787786565
Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+...++.+.| .|..+||+..|.|++++.++..
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~ 43 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS 43 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999998491406799999883988879988883
No 165
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.68 E-value=14 Score=14.36 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=39.9
Q ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 04620565445333575677777642100135433346411234556665431022104899999998521011104679
Q gi|254780805|r 79 LIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDI 158 (300)
Q Consensus 79 i~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~l 158 (300)
+.++|.+.| +-|++|.-=..-+..+|.+.|-+-+.-.. ||+--+.|.-.-+... .|.+++
T Consensus 16 V~l~PAp~G-tGliag~~vr~ilelaGI~Dv~~K~~GS~------------------n~~N~vkAt~~aL~~~-~t~~~i 75 (81)
T d2qale1 16 VFMQPASEG-TGIIAGGAMRAVLEVAGVHNVLAKAYGST------------------NPINVVRATIDGLENM-NSPEMV 75 (81)
T ss_dssp EEBCBCCTT-SCEECCHHHHHHHHHHTCCSEECEEEECC------------------CHHHHHHHHHHHHTTC-CCHHHH
T ss_pred EEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEECCCCC------------------CHHHHHHHHHHHHHCC-CCHHHH
T ss_conf 999978999-84134779999999829662676758999------------------7899999999999818-999999
Q ss_pred HHHHHH
Q ss_conf 999743
Q gi|254780805|r 159 GSIVGK 164 (300)
Q Consensus 159 A~~~G~ 164 (300)
|++-|+
T Consensus 76 A~~RGk 81 (81)
T d2qale1 76 AAKRGK 81 (81)
T ss_dssp HHHTTC
T ss_pred HHHHCC
T ss_conf 998286
No 166
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.34 E-value=14 Score=14.33 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=22.5
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8521011---1046799997433787786565
Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+.| .|-.+||++.|.|++++.++..
T Consensus 13 ~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~ 44 (68)
T d2d6ya1 13 AEFARHGIAGARIDRIAAEARANKQLIYAYYG 44 (68)
T ss_dssp HHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998592506799999887846628988874
No 167
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.90 E-value=7.7 Score=16.02 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210489999999852---10111046799997433787786565
Q gi|254780805|r 133 KDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 133 ~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+|++.+- ..+..|. ...++|+.+||+.+|.++++|++.+.
T Consensus 58 ~gLt~~q~-~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~ 101 (172)
T d2fbka1 58 SGLNAAGW-DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV 101 (172)
T ss_dssp TTCCHHHH-HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH
T ss_pred CCCCHHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 69799999-999999851899996899999997867857999999
No 168
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.64 E-value=15 Score=14.25 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=17.8
Q ss_pred CCEEEEEEE-CCHHHHHHHHHHHCC
Q ss_conf 822899985-898999999998375
Q gi|254780805|r 272 NKGQFCIKY-ETNEQLKIICSLLGE 295 (300)
Q Consensus 272 ~kGkI~I~f-~s~eeLe~Il~kL~~ 295 (300)
..|-|.|.| .+.+.++..+++|++
T Consensus 390 ~~~~iRis~~~~~~~l~~a~~rl~~ 414 (418)
T d1w7la_ 390 FDHYIRFCFVKDEATLQAMDEKLRK 414 (418)
T ss_dssp SCSEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 7997999973899999999999999
No 169
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=28.47 E-value=15 Score=14.23 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+. +.|-++||+..|.|++++.++..
T Consensus 16 ~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~ 47 (71)
T d1ui5a1 16 DLFDRRGYESTTLSEIVAHAGVTKGALYFHFA 47 (71)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998594626799999987948769998982
No 170
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=27.94 E-value=15 Score=14.17 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 852101---1104679999743378778656565435899998764210
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300)
.++.+. .-||+++|+.+|.||.+..+--.=.+---+-+..|.+.-+
T Consensus 27 e~~~~~~~ekktqeqiAeelGisr~tLyrWrt~dk~FI~y~nevAd~~l 75 (120)
T d2ao9a1 27 ELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 75 (120)
T ss_dssp HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 0011000334149999999580188898876066269999999999999
No 171
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=27.59 E-value=15 Score=14.13 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=24.7
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998521011--104679999743378778656565
Q gi|254780805|r 143 GYEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL 176 (300)
Q Consensus 143 ~~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl 176 (300)
++.+|..++| -|.+|||+.+|.+...+...+...
T Consensus 15 a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~~~ 50 (77)
T d1rp3a1 15 VVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKI 50 (77)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999998869799999999794999999999997
No 172
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.52 E-value=15 Score=14.12 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_conf 9998521011-104679999743-----3787786565654
Q gi|254780805|r 143 GYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK 177 (300)
Q Consensus 143 ~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~ 177 (300)
.+++++.... .||++|.+.+.. +++|||+.|+=+.
T Consensus 6 ~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTlSRDL~eLg 46 (75)
T d1b4aa1 6 KIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ 46 (75)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC
T ss_conf 99999986897789999999998598630899997999929
No 173
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=27.14 E-value=16 Score=14.08 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
|.+..+||.+.|.|..+|.+.++
T Consensus 66 G~n~~eLA~kY~lS~~~I~~Ii~ 88 (94)
T d1rr7a_ 66 GRNVSELTTRYGVTFNTVYKAIR 88 (94)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99899999998977999999999
No 174
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.90 E-value=16 Score=14.05 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=22.2
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.++.+. +.|-.+||++.|.|++.+.++..
T Consensus 15 ~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~ 46 (68)
T d2g7la1 15 ALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 46 (68)
T ss_dssp HHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998490307899999997828767628775
No 175
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=26.78 E-value=16 Score=14.04 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=22.4
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852101---11046799997433787786565
Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+++.+. +.|-.+||++.|.|++++.++..
T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~ 45 (72)
T d1zk8a1 14 EIADANGVQEVTLASLAQTLGVRSPSLYNHVK 45 (72)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998697756699999995979999989883
No 176
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=26.76 E-value=16 Score=14.04 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.|-.+||++.|.|++++.++..
T Consensus 23 ~~t~~~Ia~~agvs~~~iy~hF~ 45 (68)
T d1z0xa1 23 QLSMRKVAKQLGVQAPAIYWYFK 45 (68)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 16799999987726568999629
No 177
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=26.73 E-value=16 Score=14.03 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=22.5
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8521011---1046799997433787786565
Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.++.+.| .|..+||++.|.|++++.++..
T Consensus 22 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (81)
T d1rkta1 22 TVFKRKGFELTTMKDVVEESGFSRGGVYLYFS 53 (81)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998592517799999986949889988884
No 178
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.68 E-value=16 Score=13.91 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.|-.+||+..|.|++++.++..
T Consensus 24 ~~s~~~Ia~~agvs~~~iY~~F~ 46 (74)
T d2g7sa1 24 SFSYADISQVVGIRNASIHHHFP 46 (74)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCS
T ss_pred CCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 06799999987818416988883
No 179
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.85 E-value=17 Score=13.81 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_conf 99998521011-104679999743-----3787786565654
Q gi|254780805|r 142 LGYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK 177 (300)
Q Consensus 142 ~~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~ 177 (300)
..+++++.... .||++|...+-. +++|||+.|+-+.
T Consensus 7 ~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~eLg 48 (63)
T d2p5ka1 7 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH 48 (63)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC
T ss_conf 999999984897889999999998698752899887899919
No 180
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=24.77 E-value=17 Score=13.80 Aligned_cols=38 Identities=8% Similarity=0.233 Sum_probs=29.5
Q ss_pred HCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 3987999717982289998589899999999837564569
Q gi|254780805|r 261 VGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY 300 (300)
Q Consensus 261 lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~~~~~ 300 (300)
.+.||...-.+. .|.+.-++.|+|..++..|++.||++
T Consensus 28 ~k~KVq~~IQGd--~vRVtgKkrDdLQ~vi~llk~~d~~~ 65 (74)
T d1in0a2 28 SKIKVQTQIQGE--QVRVTGKSRDDLQAVIQLVKSAELGQ 65 (74)
T ss_dssp HTCSEEEEEETT--EEEEEESCHHHHHHHHHHHHHSCCSS
T ss_pred CCCCCEEEECCC--EEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 388415997582--77863788799999999998327699
No 181
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.65 E-value=17 Score=13.79 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=25.4
Q ss_pred HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998521011-----1046799997433787786565654
Q gi|254780805|r 142 LGYEQLISEYG-----YTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 142 ~~~~~l~~~~~-----~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
.+.+.+.++.+ +....+|+++|..||.|-|.||=+.
T Consensus 19 eAv~hIf~eL~g~EGllvASkiADrvgiTRSVIVNALRK~E 59 (91)
T d2b0la1 19 EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE 59 (91)
T ss_dssp HHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999738976547415554651853999999998764
No 182
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=24.23 E-value=18 Score=13.74 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.|-.+||++.|.|++++.++..
T Consensus 20 ~~ti~~Ia~~agvs~~~~Y~~F~ 42 (69)
T d2i10a1 20 GTSITDLTKALGINPPSLYAAFG 42 (69)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 27799999986878629988885
No 183
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.01 E-value=18 Score=13.71 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99852101---11046799997433787786565
Q gi|254780805|r 144 YEQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 144 ~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+++.+. +.|..+||+..|.|++++.++..
T Consensus 13 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 46 (74)
T d1v7ba1 13 AIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (74)
T ss_dssp HHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 9999998595635799999884969223855079
No 184
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=24.01 E-value=18 Score=13.71 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCC
Q ss_conf 9999999997398799971798228999-85898999999998375645
Q gi|254780805|r 251 TDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDF 298 (300)
Q Consensus 251 ~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~ 298 (300)
..+..+|. ..|..+.|..++.-.+|.+ +|.+.++.+.++++|.+..+
T Consensus 20 ~~l~~~L~-~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~G~ 67 (77)
T d1utaa_ 20 ETVRAQLA-FEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGH 67 (77)
T ss_dssp HHHHHHHH-HHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HCCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998-6588516537996899997784999999999999998699
No 185
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}
Probab=23.88 E-value=18 Score=13.70 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=17.7
Q ss_pred CCEEEEEEE-CCHHHHHHHHHHHCC
Q ss_conf 822899985-898999999998375
Q gi|254780805|r 272 NKGQFCIKY-ETNEQLKIICSLLGE 295 (300)
Q Consensus 272 ~kGkI~I~f-~s~eeLe~Il~kL~~ 295 (300)
..|-|.|.| .+.|+++.-+++|.+
T Consensus 342 ~~~~iRis~~~~~e~i~~ai~rL~~ 366 (368)
T d1v2da_ 342 PKDLFRFAFCKTEEELHLALERLGR 366 (368)
T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 8998999964999999999999998
No 186
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=23.78 E-value=18 Score=13.68 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=22.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10111046799997433787786565654
Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300)
Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300)
.....|.+++|+++|.+...+.+.||.+.
T Consensus 31 ~~gp~s~~eLA~~~g~~~~~l~rlLr~l~ 59 (85)
T d1tw3a1 31 LAGARTVKALAARTDTRPEALLRLIRHLV 59 (85)
T ss_dssp HTTCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 54999999999884929269999999998
No 187
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.75 E-value=12 Score=14.88 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98521011---1046799997433787786565
Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
.+++.+.| .|-++||+..|.|++++.++..
T Consensus 6 ~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~ 38 (65)
T d2np3a1 6 RVCFAERGFDATSLRRIAETAGVDQSLVHHFYG 38 (65)
T ss_dssp HHHC---------------------------CC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998790407799999987868879998887
No 188
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=22.80 E-value=19 Score=13.56 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11046799997433787786565
Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
+.|-.+||++.|.|++++.++..
T Consensus 19 ~~s~~~Ia~~agvs~~tiy~~F~ 41 (62)
T d2vkva1 19 GLTTRKLAQKLGVEQPTLYWHVK 41 (62)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHSC
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 17899999880988889998887
No 189
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=22.12 E-value=19 Score=13.48 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=21.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0111046799997433787786565
Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILR 174 (300)
Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300)
..+.|-.+||+..|.|++++.++..
T Consensus 17 ~G~~ti~~Ia~~agvs~~~iY~~F~ 41 (65)
T d2g7ga1 17 DGDFRMPDLARHLNVQVSSIYHHAK 41 (65)
T ss_dssp HSSCCHHHHHHHTTSCHHHHHTTSC
T ss_pred CCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf 6797899999885706131311589
No 190
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=21.69 E-value=20 Score=13.42 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.4
Q ss_pred HHCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 101110467999974-33787786565
Q gi|254780805|r 149 SEYGYTQNDIGSIVG-KSRSHVANILR 174 (300)
Q Consensus 149 ~~~~~t~~~lA~~~G-~s~s~V~~~Lr 174 (300)
+..++|-.+||..|| ++.++|...++
T Consensus 56 ~~t~~sl~~IG~~fg~rdHsTV~~a~k 82 (110)
T d1l8qa1 56 KVCSASLIEIARAFKRKDHTTVIHAIR 82 (110)
T ss_dssp HHHCCCHHHHHHHSSCCCSTHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 870899999999958997109999999
No 191
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}
Probab=21.46 E-value=20 Score=13.39 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=14.1
Q ss_pred CEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf 228999858-98999999998375
Q gi|254780805|r 273 KGQFCIKYE-TNEQLKIICSLLGE 295 (300)
Q Consensus 273 kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300)
.+-+.|.|. +.|+|+.-++.|.+
T Consensus 359 ~~~iRis~~~~~~~l~~a~~~L~~ 382 (389)
T d2gb3a1 359 KKEIRIACVLEKDLLSRAIDVLME 382 (389)
T ss_dssp SSEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 998999972899999999999999
No 192
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}
Probab=20.36 E-value=21 Score=13.25 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=15.1
Q ss_pred CEEEEEEEC--CHHHHHHHHHHHCC
Q ss_conf 228999858--98999999998375
Q gi|254780805|r 273 KGQFCIKYE--TNEQLKIICSLLGE 295 (300)
Q Consensus 273 kGkI~I~f~--s~eeLe~Il~kL~~ 295 (300)
.|-|.|.|. +.++++.-+++|.+
T Consensus 384 ~~~iRls~~~~~~e~l~~a~~rL~~ 408 (420)
T d1vp4a_ 384 SPSMRLSFCLPPDEKIVEGIKRLRE 408 (420)
T ss_dssp CSEEEEECSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9979999584999999999999999
Done!