RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780805|ref|YP_003065218.1| chromosome partitioning
protein B [Candidatus Liberibacter asiaticus str. psy62]
(300 letters)
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo
sapiens} (A:)
Length = 121
Score = 103 bits (258), Expect = 3e-23
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 20/133 (15%)
Query: 6 SKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLED 65
+ G A G ++ +P + + P + ++
Sbjct: 2 APEGPGPSGGAQGGSIH---SGRIAAVHNVP-------LSVL--IRPLPSV-LDPAKVQS 48
Query: 66 LCQSIKSHGIIQPLIVR-----AIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV--DN 118
L +I+ P I A + G R+ A + +P + +
Sbjct: 49 LVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSD 108
Query: 119 KSSLEIAIVENVQ 131
A ++Q
Sbjct: 109 LRVYLGASTPDLQ 121
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} (A:1-99)
Length = 99
Score = 102 bits (255), Expect = 9e-23
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Query: 7 KRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDL 66
LGRGL AL+ + +P + SI PNP PR F E L++L
Sbjct: 5 PSGLGRGLEALLPK-------TGAGVVRLP-------LASIRPNPRQPRKRFAEESLKEL 50
Query: 67 CQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV 116
SI+ G++QPL+VR +G Y+++AGERR+RAA MA L EVP +++++
Sbjct: 51 ADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQEVPAVVKDL 99
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid
partitioning, protein-DNA complex, heilx-turn- helix
motif, transcription factor; HET: BRU; 2.20A
{Escherichia coli} (A:1-76)
Length = 76
Score = 94.7 bits (236), Expect = 1e-20
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQN 156
R+R +K A +P I N N+ ++EN+QR +L P E A + + G +
Sbjct: 1 RYRGSKWAGKKSIPAFIDNDYNE---ADQVIENLQRNELTPREIADFIGREL-AKGKKKG 56
Query: 157 DIGSIVGKSRSHVANILRIL 176
DI +GKS + + + +L
Sbjct: 57 DIAKEIGKSPAFITQHVTLL 76
>1vk1_A Conserved hypothetical protein; reductive methylation,
dimethyl lysine, structural genomics, PSI, protein
structure initiative; HET: MLY; 1.20A {Pyrococcus
furiosus} (A:1-93,A:228-242)
Length = 108
Score = 88.4 bits (219), Expect = 1e-18
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 42 ISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFR 99
+ I + P LED +S+ GI ++ A Y I+ G R+
Sbjct: 16 VEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWA 75
Query: 100 AAKMASLSEVPVIIRNVD 117
+ P +I +
Sbjct: 76 GLQKLGAKRAPSVILDYF 93
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation;
HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
(A:1-81)
Length = 81
Score = 81.6 bits (202), Expect = 1e-16
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 129 NVQR-KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIR 187
+VQ + E L + G +Q DI + G S++ V L+ P + +
Sbjct: 1 DVQTALQHSIREIGLRLXRXK-NDGXSQKDIAAKEGLSQAKVTRALQAASAPEELVALFP 59
Query: 188 -KEEISLGHARTLVSTSD 204
+ E++ +TL + D
Sbjct: 60 VQSELTFSDYKTLCAVGD 77
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} (A:100-158)
Length = 59
Score = 78.1 bits (193), Expect = 1e-15
Identities = 32/58 (55%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 119 KSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176
+ +LE+A+VEN+QR+DL+P+EEA GY+ L+ E G TQ ++ VGK+RS VAN LR+L
Sbjct: 3 REALELALVENLQREDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL 59
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin,
ATP, oxidoreductase; 1.65A {Homo sapiens} (A:)
Length = 110
Score = 77.6 bits (191), Expect = 2e-15
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 11/112 (9%)
Query: 28 PEKKTETIPESQ-DCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIV----- 81
P + + + + + P + ++ L +I+ P I
Sbjct: 2 PHMSIHSGRIAAVHNVPLSVL--IRPLPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIK 58
Query: 82 RAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV--DNKSSLEIAIVENVQ 131
A + G R+ A + +P + + A ++Q
Sbjct: 59 GAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ 110
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} (A:159-230)
Length = 72
Score = 70.1 bits (172), Expect = 4e-13
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 177 KLPSSVREMIRKEEISLGHARTLVSTSDP--LSLAQVIVSKKMSVRDTEELVQEQDNKKE 234
+LP E + + EI+ GHAR L+ L + I+ K +SVR E L + +
Sbjct: 1 QLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPK 60
Query: 235 KRKK 238
+ +
Sbjct: 61 RSAE 64
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI,
protein structure initiative, southeast collaboratory
for structural genomics; 1.80A {Pyrococcus horikoshii
OT3} (A:)
Length = 200
Score = 30.1 bits (67), Expect = 0.35
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 3/93 (3%)
Query: 126 IVENVQRKDLNPLEEALGYEQLISEY---GYTQNDIGSIVGKSRSHVANILRILKLPSSV 182
+V V RK E + + + I + V +LR L +
Sbjct: 1 MVGQVIRKRGAYPEYTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDII 60
Query: 183 REMIRKEEISLGHARTLVSTSDPLSLAQVIVSK 215
R R ++L S +
Sbjct: 61 RSKQRGHFLTLKGKEIRDKLLSMFSEPIGVSVD 93
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural
genomics, PSI-2, protein structure initiative; 2.61A
{Agrobacterium tumefaciens str} (A:)
Length = 205
Score = 29.4 bits (66), Expect = 0.62
Identities = 13/115 (11%), Positives = 32/115 (27%), Gaps = 12/115 (10%)
Query: 58 FESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPV-IIRNV 116
+ +D + +H + +V + Y +I A + V +
Sbjct: 36 WRETRKKDGDDFLGNHIVP---VVAGPKDRAY-LIDHHHLVLALSKEGVEHVLTSEVAKF 91
Query: 117 DNKSSLEIAIVENVQRKDLNPLEEA----LGYEQLISEYGYTQNDI-GSIVGKSR 166
+ + ++L +A + ++D S+ G R
Sbjct: 92 SHLG--KDEFWSVXDHRNLIYPFDAQGLRRQSGDIPKNIHDLEDDPFRSLAGALR 144
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily),
rossmann fold, NADP-binding, oxidoreductase; HET: NAP;
1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
(A:1-127,A:284-371)
Length = 215
Score = 27.6 bits (61), Expect = 2.2
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 51 PHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAK 102
P + E L + + G + +R + G I G R +
Sbjct: 143 PGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGE 194
>2pyq_A Uncharacterized protein; YP_512017.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.50A {Jannaschia
SP} (A:)
Length = 114
Score = 27.3 bits (61), Expect = 2.5
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 14/68 (20%)
Query: 184 EMIRKEEISLGHA-----RTLVSTSDPLSLAQV---IVSKKMSVRDTEEL------VQEQ 229
++ K G A + V+ SD L + + KK+ + D+E L V E
Sbjct: 27 ALLEKVTKGCGPAIYNRDASTVAGSDTAELETIKKNFLXKKLGLADSESLXGGIQSVIET 86
Query: 230 DNKKEKRK 237
+ E+ K
Sbjct: 87 YGRSERNK 94
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomics, PSI-2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A* (A:152-237)
Length = 86
Score = 27.3 bits (61), Expect = 2.7
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 153 YTQNDIGSIVGKSRSHVANILRILK 177
Y + I +G ++ LK
Sbjct: 28 YDKXLIAGRLGXKPESLSRAFSRLK 52
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding
protein, xenobiotic response element family of
transcriptional regulators; HET: MSE BTB; 1.85A
{Pseudomonas syringae PV} (A:)
Length = 83
Score = 27.0 bits (60), Expect = 3.4
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 129 NVQRKDLNPLEEALGYE--QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180
N + N +AL + S G TQ ++ + +G+ +S V+ +
Sbjct: 2 NATKTIHNARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLD 55
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family;
stationary phase, DNA-binding, transcription regulation;
1.50A {Thermus thermophilus} (A:118-202)
Length = 85
Score = 26.2 bits (58), Expect = 5.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
T +++ + VG R V ++ L
Sbjct: 31 THDELAAAVGSVRETVTKVIGELA 54
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain,
winged helix-turn-helix, thermus thermophilus
DNA-binding, plasmid; 2.00A {Thermus thermophilus}
(A:111-195)
Length = 85
Score = 26.2 bits (58), Expect = 5.4
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
+ +I R V+ +L L+
Sbjct: 31 SHEEIADATASIRESVSKVLADLR 54
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.80A {Salmonella typhimurium}
(A:96-123,A:177-281)
Length = 133
Score = 26.1 bits (57), Expect = 5.7
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76
V P NP N E L L + H I
Sbjct: 37 CVSRPTNPTGNVITDEELXKLDRLANQHNIP 67
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP,
CAMP-binding, DNA- binding, nucleotide-binding,
transcription; HET: CMP; 1.66A {Escherichia coli k-12}
PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A*
1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A*
2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A*
... (A:189-260)
Length = 72
Score = 25.8 bits (57), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
T+ +IG IVG SR V IL++L+
Sbjct: 31 TRQEIGQIVGCSRETVGRILKMLE 54
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural
genomics consortium, reduced- dimensionality PSI; NMR
{Methanothermobacterthermautotrophicus} (A:1-46)
Length = 46
Score = 25.9 bits (57), Expect = 6.4
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 150 EYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTL 199
E G++Q I + +R +V+ I R E I K +L ++L
Sbjct: 3 ERGWSQKKIARELKTTRQNVSAIER------KAMENIEKSRNTLDFVKSL 46
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase,
PSI, protein structure initiative; HET: APR; 1.60A
{Escherichia coli} (A:1-183)
Length = 183
Score = 25.9 bits (56), Expect = 6.6
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 52 HNP-RNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVP 110
+F + L +K G + LIV D L + + A L
Sbjct: 7 ILNETAWFGRGAVGALTDEVKRRGYQKALIV--TDKTLVQCGVVAKVTDKXDAAGL-AWA 63
Query: 111 VIIRNVDNKS 120
+ V N +
Sbjct: 64 IYDGVVPNPT 73
>2gau_A Transcriptional regulator, CRP/FNR family; structural
genomics, PSI; 1.90A {Porphyromonas gingivalis W83}
(A:152-232)
Length = 81
Score = 25.8 bits (57), Expect = 7.1
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
++ ++ ++ + S+ L
Sbjct: 31 SREELATLSNMTVSNAIRTLSTFV 54
>2fmy_A COOA, carbon monoxide oxidation system transcription
regulator COOA-1; DNA transcription regulator, DNA
binding protein; HET: HEM; 2.20A {Carboxydothermus
hydrogenoformans} PDB: 2hkx_A* (A:137-220)
Length = 84
Score = 25.8 bits (57), Expect = 7.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
+I ++G +R V+ +L K
Sbjct: 33 NTEEIALMLGTTRQTVSVLLNDFK 56
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen
lyase, tryptophan biosynthesis, pyridoxal phosphate;
HET: IPL PLP; 1.4A {Salmonella typhimurium}
(B:53-82,B:192-270,B:320-379)
Length = 169
Score = 25.8 bits (56), Expect = 7.1
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 49 PNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNG 87
P P R + G E Q + G + ++ + G
Sbjct: 34 PYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGG 72
>1ft9_A Carbon monoxide oxidation system transcription regulator;
heme sensor, catabolite gene activator protein; HET:
HEM; 2.60A {Rhodospirillum rubrum} (A:133-222)
Length = 90
Score = 25.9 bits (57), Expect = 7.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
T +I +++G SR + L L
Sbjct: 33 TVEEIANLIGSSRQTTSTALNSLI 56
>3iwz_A CAP-like, catabolite activation-like protein; XCC,
pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum
sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
(A:159-230)
Length = 72
Score = 25.8 bits (57), Expect = 7.8
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 154 TQNDIGSIVGKSRSHVANILRILK 177
++ ++ +VG SR +L+ L+
Sbjct: 31 SRQELARLVGCSREMAGRVLKKLQ 54
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, domain, PSI,
MCSG, structural genomics, midwest center for structural
genomics; 1.60A {Porphyromonas gingivalis} (A:)
Length = 122
Score = 25.8 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 112 IIRNVDNKSSLEIAIVENVQRK-DLNPLEEALG--YEQLISE 150
+R + NKS +++IV+ + RK L+ + + G + +L+SE
Sbjct: 11 RVRTLANKSKXKVSIVQQIDRKVALDDIAVSHGLDFPELLSE 52
>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas
europaea} (A:)
Length = 83
Score = 25.4 bits (56), Expect = 9.2
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174
+ + G TQ ++G ++ V+++ R
Sbjct: 25 EHLRNSGLTQFKAAELLGVTQPRVSDLXR 53
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate
diphosphate decarboxylase, lyase; 1.80A {Trypanosoma
brucei} (A:179-364)
Length = 186
Score = 25.5 bits (56), Expect = 9.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFE 299
+K +SS G+ S+K + I E++KI + DF
Sbjct: 16 QKDVSSTKGMQQSLKTSPLM-KKRISETVPERMKIASRAIKARDFA 60
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein
structure initiative, midwest center for structural
genomics; 1.80A {Silicibacter pomeroyi} (A:)
Length = 86
Score = 25.5 bits (56), Expect = 9.9
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 132 RKDLNPLEEALGYE--QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180
+ P L Q + G TQ D+ + K +S VA + +
Sbjct: 5 KTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLD 55
>3ivp_A Putative transposon-related DNA-binding protein; APC62618,
structural genomics, PSI-2, protein structure
initiative; HET: PG4; 2.02A {Clostridium difficile 630}
(A:1-73)
Length = 73
Score = 25.4 bits (56), Expect = 9.9
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 131 QRKDLNPLEEALGYE--QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180
++K+ ALG + + G T+ +G+ + ++ NI + PS
Sbjct: 2 RKKEDKYDFRALGLAIKEARKKQGLTREQVGAXIEIDPRYLTNIENKGQHPS 53
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.313 0.132 0.356
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,078,031
Number of extensions: 92387
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 79
Length of query: 300
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 212
Effective length of database: 1,981,209
Effective search space: 420016308
Effective search space used: 420016308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)