RPSBLAST alignment of GI: 254780805 and protein with PDBid: 1vz0

>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 Length = 230

 Score =  159 bits (404), Expect = 6e-40
 Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 18/234 (7%)

Query: 7   KRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDL 66
              LGRGL AL+ +    +                + + SI PNP  PR  F  E L++L
Sbjct: 5   PSGLGRGLEALLPKTGAGVVR--------------LPLASIRPNPRQPRKRFAEESLKEL 50

Query: 67  CQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAI 126
             SI+  G++QPL+VR   +G Y+++AGERR+RAA MA L EVP +++++ ++ +LE+A+
Sbjct: 51  ADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQEVPAVVKDLTDREALELAL 109

Query: 127 VENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186
           VEN+QR+DL+P+EEA GY+  + E G TQ ++   VGK+RS VAN LR+L+LP    E +
Sbjct: 110 VENLQREDLSPVEEARGYQA-LLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEAL 168

Query: 187 RKEEISLGHARTLVSTSDP--LSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK 238
            + EI+ GHAR L+       L   + I+ K +SVR  E L +      ++  +
Sbjct: 169 ERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAE 222